Query 029920
Match_columns 185
No_of_seqs 127 out of 1835
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 05:44:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029920.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029920hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0073 GTP-binding ADP-ribosy 100.0 6.3E-37 1.4E-41 200.8 19.5 184 1-184 1-184 (185)
2 PLN00223 ADP-ribosylation fact 100.0 2.6E-35 5.6E-40 205.8 22.2 179 1-180 1-180 (181)
3 PTZ00133 ADP-ribosylation fact 100.0 7.2E-35 1.6E-39 203.7 22.1 180 1-181 1-181 (182)
4 cd04149 Arf6 Arf6 subfamily. 100.0 2.4E-34 5.2E-39 198.8 19.8 161 14-175 7-167 (168)
5 cd04154 Arl2 Arl2 subfamily. 100.0 2.7E-34 5.9E-39 199.5 20.2 171 4-175 2-172 (173)
6 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.1E-35 6.7E-40 198.9 14.4 164 13-182 6-176 (205)
7 smart00177 ARF ARF-like small 100.0 6.9E-34 1.5E-38 197.7 21.2 164 14-178 11-174 (175)
8 PF00025 Arf: ADP-ribosylation 100.0 9.3E-34 2E-38 196.8 21.7 174 4-177 2-175 (175)
9 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.5E-33 3.3E-38 193.1 19.7 158 17-175 1-158 (159)
10 cd04158 ARD1 ARD1 subfamily. 100.0 2.9E-33 6.3E-38 193.6 20.2 165 18-182 1-165 (169)
11 KOG0092 GTPase Rab5/YPT51 and 100.0 1.2E-33 2.6E-38 190.5 15.0 163 13-182 2-171 (200)
12 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 2.2E-32 4.7E-37 190.0 20.7 162 13-175 12-173 (174)
13 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.6E-32 3.6E-37 192.1 20.2 170 15-184 2-176 (183)
14 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-32 2.4E-37 194.9 17.3 160 17-181 1-166 (202)
15 cd04151 Arl1 Arl1 subfamily. 100.0 4.8E-32 1E-36 185.5 19.2 157 18-175 1-157 (158)
16 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.3E-32 2.7E-37 185.8 15.1 164 13-180 19-187 (221)
17 cd04156 ARLTS1 ARLTS1 subfamil 100.0 8.9E-32 1.9E-36 184.4 18.9 158 18-175 1-159 (160)
18 cd04161 Arl2l1_Arl13_like Arl2 100.0 1.1E-31 2.4E-36 185.3 19.5 158 18-175 1-166 (167)
19 cd04157 Arl6 Arl6 subfamily. 100.0 9.2E-32 2E-36 184.6 18.6 157 18-175 1-161 (162)
20 cd04121 Rab40 Rab40 subfamily. 100.0 1.7E-31 3.7E-36 187.2 20.2 160 14-181 4-170 (189)
21 cd04155 Arl3 Arl3 subfamily. 100.0 2.6E-31 5.7E-36 184.4 20.9 170 5-175 3-172 (173)
22 smart00178 SAR Sar1p-like memb 100.0 2.2E-31 4.7E-36 186.6 20.0 164 13-176 14-183 (184)
23 KOG0078 GTP-binding protein SE 100.0 2.9E-32 6.3E-37 186.9 15.0 165 12-181 8-177 (207)
24 cd00879 Sar1 Sar1 subfamily. 100.0 3.1E-31 6.7E-36 186.7 20.6 167 10-176 13-189 (190)
25 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.7E-32 1.5E-36 187.2 16.2 160 16-181 2-167 (172)
26 KOG0070 GTP-binding ADP-ribosy 100.0 6.7E-32 1.5E-36 181.5 15.3 179 1-180 1-180 (181)
27 KOG0098 GTPase Rab2, small G p 100.0 3.3E-32 7.1E-37 182.4 13.6 164 13-181 3-171 (216)
28 cd00878 Arf_Arl Arf (ADP-ribos 100.0 4E-31 8.6E-36 180.9 19.3 157 18-175 1-157 (158)
29 cd04126 Rab20 Rab20 subfamily. 100.0 3.3E-31 7.2E-36 189.4 18.2 162 17-179 1-191 (220)
30 KOG0394 Ras-related GTPase [Ge 100.0 4.5E-32 9.7E-37 181.4 12.7 164 12-179 5-179 (210)
31 cd04127 Rab27A Rab27a subfamil 100.0 1.1E-30 2.3E-35 182.4 19.7 160 15-180 3-179 (180)
32 cd01875 RhoG RhoG subfamily. 100.0 1.2E-31 2.6E-36 188.8 14.7 163 15-179 2-178 (191)
33 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 5.5E-31 1.2E-35 181.3 17.6 156 18-175 1-163 (164)
34 cd04133 Rop_like Rop subfamily 100.0 5.7E-31 1.2E-35 182.7 17.7 159 17-178 2-173 (176)
35 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 9.2E-31 2E-35 185.8 18.8 159 17-181 1-171 (201)
36 cd00877 Ran Ran (Ras-related n 100.0 6.6E-31 1.4E-35 181.3 17.1 155 17-179 1-160 (166)
37 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.4E-31 7.4E-36 184.1 15.0 159 17-177 2-174 (175)
38 cd04160 Arfrp1 Arfrp1 subfamil 100.0 2.1E-30 4.5E-35 178.8 18.6 158 18-175 1-166 (167)
39 cd04138 H_N_K_Ras_like H-Ras/N 100.0 9.8E-31 2.1E-35 179.3 16.8 156 16-177 1-161 (162)
40 cd04122 Rab14 Rab14 subfamily. 100.0 3.9E-30 8.5E-35 177.4 19.8 157 16-179 2-165 (166)
41 PTZ00369 Ras-like protein; Pro 100.0 1.2E-30 2.7E-35 183.5 17.4 162 14-181 3-170 (189)
42 PLN03071 GTP-binding nuclear p 100.0 1.4E-30 3E-35 187.0 17.7 158 14-180 11-174 (219)
43 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 4.2E-31 9.2E-36 184.4 14.3 162 14-178 3-180 (182)
44 cd04136 Rap_like Rap-like subf 100.0 2.7E-30 5.9E-35 177.5 17.9 156 17-177 2-162 (163)
45 cd01867 Rab8_Rab10_Rab13_like 100.0 7.6E-30 1.7E-34 176.1 19.6 158 15-179 2-166 (167)
46 cd04175 Rap1 Rap1 subgroup. T 100.0 3.8E-30 8.3E-35 177.1 17.9 157 16-178 1-163 (164)
47 cd04119 RJL RJL (RabJ-Like) su 100.0 5.3E-30 1.2E-34 176.7 18.6 156 17-178 1-167 (168)
48 KOG0080 GTPase Rab18, small G 100.0 4.6E-31 1E-35 172.9 11.5 164 13-180 8-176 (209)
49 cd04128 Spg1 Spg1p. Spg1p (se 100.0 4.1E-30 9E-35 179.6 17.0 159 17-179 1-167 (182)
50 cd01865 Rab3 Rab3 subfamily. 100.0 1.2E-29 2.7E-34 174.8 18.7 155 17-178 2-163 (165)
51 cd04131 Rnd Rnd subfamily. Th 100.0 7.8E-30 1.7E-34 177.6 17.8 160 16-178 1-176 (178)
52 cd04145 M_R_Ras_like M-Ras/R-R 100.0 5.6E-30 1.2E-34 176.1 16.9 156 16-177 2-163 (164)
53 cd04124 RabL2 RabL2 subfamily. 100.0 9.3E-30 2E-34 174.7 17.4 155 17-180 1-160 (161)
54 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.9E-29 4.2E-34 174.5 19.1 157 18-179 2-166 (170)
55 cd04112 Rab26 Rab26 subfamily. 100.0 2E-29 4.4E-34 177.6 19.4 159 17-182 1-167 (191)
56 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.8E-29 3.9E-34 181.5 19.2 165 13-180 10-190 (232)
57 smart00173 RAS Ras subfamily o 100.0 1.1E-29 2.4E-34 174.7 17.5 157 17-179 1-163 (164)
58 KOG0075 GTP-binding ADP-ribosy 100.0 3.2E-30 6.9E-35 166.5 13.4 172 5-178 10-182 (186)
59 cd04103 Centaurin_gamma Centau 100.0 2.8E-30 6.2E-35 176.6 14.0 154 17-176 1-157 (158)
60 cd01864 Rab19 Rab19 subfamily. 100.0 9.5E-30 2.1E-34 175.3 16.7 156 15-176 2-164 (165)
61 cd01871 Rac1_like Rac1-like su 100.0 2E-30 4.3E-35 180.1 13.3 158 17-176 2-173 (174)
62 cd04144 Ras2 Ras2 subfamily. 100.0 1.7E-29 3.6E-34 177.9 18.2 158 18-181 1-166 (190)
63 cd04159 Arl10_like Arl10-like 100.0 3.7E-29 8E-34 170.7 19.4 156 19-175 2-158 (159)
64 cd04176 Rap2 Rap2 subgroup. T 100.0 1.8E-29 4E-34 173.5 18.0 156 16-177 1-162 (163)
65 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.7E-29 5.9E-34 173.1 18.8 157 16-179 2-165 (166)
66 KOG0071 GTP-binding ADP-ribosy 100.0 2.9E-29 6.3E-34 160.8 17.3 166 13-179 14-179 (180)
67 cd04110 Rab35 Rab35 subfamily. 100.0 4.5E-29 9.8E-34 176.9 19.7 159 14-180 4-169 (199)
68 cd04116 Rab9 Rab9 subfamily. 100.0 3.2E-29 6.9E-34 173.5 18.5 158 14-176 3-169 (170)
69 cd04109 Rab28 Rab28 subfamily. 100.0 3.1E-29 6.7E-34 179.7 18.9 158 17-179 1-167 (215)
70 cd04117 Rab15 Rab15 subfamily. 100.0 3.4E-29 7.3E-34 171.9 18.3 154 17-176 1-160 (161)
71 cd04111 Rab39 Rab39 subfamily. 100.0 3.2E-29 7E-34 179.0 18.7 161 16-181 2-169 (211)
72 cd04134 Rho3 Rho3 subfamily. 100.0 3.3E-30 7.1E-35 181.3 13.2 161 17-179 1-175 (189)
73 cd01866 Rab2 Rab2 subfamily. 100.0 6.7E-29 1.5E-33 171.6 19.3 158 15-179 3-167 (168)
74 cd04125 RabA_like RabA-like su 100.0 6.5E-29 1.4E-33 174.6 19.5 158 17-181 1-165 (188)
75 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 9.8E-30 2.1E-34 182.0 14.9 163 16-180 1-178 (222)
76 KOG0095 GTPase Rab30, small G 100.0 6.7E-30 1.5E-34 165.6 12.6 163 12-180 3-171 (213)
77 cd04106 Rab23_lke Rab23-like s 100.0 4.4E-29 9.5E-34 171.3 17.5 152 17-176 1-161 (162)
78 cd04132 Rho4_like Rho4-like su 100.0 1.2E-29 2.6E-34 178.1 15.0 156 17-180 1-169 (187)
79 cd01863 Rab18 Rab18 subfamily. 100.0 4.4E-29 9.6E-34 171.2 17.4 154 17-176 1-160 (161)
80 cd04143 Rhes_like Rhes_like su 100.0 7.1E-29 1.5E-33 180.6 19.4 156 17-177 1-170 (247)
81 cd04115 Rab33B_Rab33A Rab33B/R 100.0 5.2E-29 1.1E-33 172.4 17.6 158 16-178 2-169 (170)
82 cd01860 Rab5_related Rab5-rela 100.0 6.8E-29 1.5E-33 170.6 17.9 155 16-177 1-162 (163)
83 cd01868 Rab11_like Rab11-like. 100.0 1.5E-28 3.3E-33 169.2 19.7 156 15-177 2-164 (165)
84 smart00176 RAN Ran (Ras-relate 100.0 3.8E-29 8.3E-34 176.6 16.7 151 22-180 1-156 (200)
85 cd04140 ARHI_like ARHI subfami 100.0 3.7E-29 8.1E-34 172.4 16.3 154 17-176 2-163 (165)
86 smart00175 RAB Rab subfamily o 100.0 1.8E-28 3.8E-33 168.6 19.3 156 17-179 1-163 (164)
87 PLN03118 Rab family protein; P 100.0 8.8E-29 1.9E-33 176.9 18.2 162 13-180 11-179 (211)
88 PLN03110 Rab GTPase; Provision 100.0 1.9E-28 4E-33 175.7 19.3 162 13-180 9-176 (216)
89 cd04118 Rab24 Rab24 subfamily. 100.0 4.2E-29 9.1E-34 176.3 15.7 161 17-180 1-168 (193)
90 cd01861 Rab6 Rab6 subfamily. 100.0 1.9E-28 4.1E-33 168.0 18.1 154 17-176 1-160 (161)
91 cd04113 Rab4 Rab4 subfamily. 100.0 1.9E-28 4.2E-33 168.1 18.1 154 17-177 1-161 (161)
92 cd04139 RalA_RalB RalA/RalB su 100.0 1.6E-28 3.5E-33 168.7 17.5 157 17-179 1-163 (164)
93 KOG0086 GTPase Rab4, small G p 100.0 5.5E-29 1.2E-33 162.0 13.8 164 13-181 6-174 (214)
94 cd04147 Ras_dva Ras-dva subfam 100.0 1E-28 2.3E-33 174.9 16.0 161 18-183 1-168 (198)
95 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.7E-28 5.8E-33 167.8 17.6 154 17-177 1-163 (164)
96 cd01862 Rab7 Rab7 subfamily. 100.0 4.8E-28 1E-32 167.7 19.0 160 17-181 1-170 (172)
97 PF00071 Ras: Ras family; Int 100.0 2.7E-28 5.8E-33 167.5 17.3 154 18-178 1-161 (162)
98 cd04142 RRP22 RRP22 subfamily. 100.0 4.3E-28 9.3E-33 171.4 18.2 160 17-180 1-176 (198)
99 PLN03108 Rab family protein; P 100.0 9E-28 1.9E-32 171.5 19.9 160 14-180 4-170 (210)
100 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.8E-29 1.3E-33 170.1 12.8 163 12-180 10-178 (222)
101 smart00174 RHO Rho (Ras homolo 100.0 1.4E-28 3.1E-33 170.7 14.6 159 19-179 1-173 (174)
102 cd01893 Miro1 Miro1 subfamily. 100.0 3.2E-28 7E-33 167.9 16.3 161 17-179 1-165 (166)
103 KOG0093 GTPase Rab3, small G p 100.0 6.8E-29 1.5E-33 160.4 11.8 161 15-181 20-186 (193)
104 KOG0091 GTPase Rab39, small G 100.0 3.9E-29 8.5E-34 164.3 10.8 164 15-182 7-177 (213)
105 KOG0079 GTP-binding protein H- 100.0 1.9E-29 4.2E-34 163.1 9.2 160 13-179 5-170 (198)
106 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-28 3.1E-33 169.9 14.1 156 17-177 2-163 (168)
107 cd01892 Miro2 Miro2 subfamily. 100.0 1E-27 2.2E-32 165.8 17.5 153 14-178 2-166 (169)
108 cd04135 Tc10 TC10 subfamily. 100.0 1.9E-28 4E-33 170.2 13.8 160 17-177 1-173 (174)
109 cd04148 RGK RGK subfamily. Th 100.0 4.5E-28 9.7E-33 174.2 15.9 155 17-178 1-163 (221)
110 cd00154 Rab Rab family. Rab G 100.0 2E-27 4.4E-32 161.9 17.3 151 17-174 1-158 (159)
111 cd04130 Wrch_1 Wrch-1 subfamil 100.0 3.4E-28 7.4E-33 168.8 13.7 157 17-175 1-171 (173)
112 cd04123 Rab21 Rab21 subfamily. 100.0 4.5E-27 9.8E-32 161.1 19.0 154 17-177 1-161 (162)
113 cd01873 RhoBTB RhoBTB subfamil 100.0 3.5E-28 7.6E-33 171.4 13.3 156 16-176 2-194 (195)
114 cd04114 Rab30 Rab30 subfamily. 100.0 5.4E-27 1.2E-31 162.1 19.0 158 14-177 5-168 (169)
115 cd04146 RERG_RasL11_like RERG/ 100.0 9.7E-28 2.1E-32 165.3 15.2 155 18-178 1-164 (165)
116 cd04137 RheB Rheb (Ras Homolog 100.0 4.4E-27 9.5E-32 164.2 17.2 158 17-180 2-165 (180)
117 cd00157 Rho Rho (Ras homology) 100.0 6.1E-28 1.3E-32 167.0 12.2 158 17-175 1-170 (171)
118 cd00876 Ras Ras family. The R 100.0 5.8E-27 1.3E-31 160.2 16.7 154 18-177 1-160 (160)
119 cd01870 RhoA_like RhoA-like su 100.0 4.4E-27 9.6E-32 163.4 16.0 160 17-177 2-174 (175)
120 KOG0076 GTP-binding ADP-ribosy 100.0 1E-27 2.2E-32 159.1 10.9 177 4-180 5-189 (197)
121 PTZ00132 GTP-binding nuclear p 100.0 2E-26 4.3E-31 165.2 18.2 163 11-181 4-171 (215)
122 KOG0072 GTP-binding ADP-ribosy 100.0 1.4E-27 2.9E-32 153.8 10.4 178 2-180 4-181 (182)
123 cd01897 NOG NOG1 is a nucleola 99.9 6.3E-26 1.4E-30 156.6 16.9 153 17-177 1-167 (168)
124 cd04129 Rho2 Rho2 subfamily. 99.9 1.7E-26 3.6E-31 162.2 13.6 164 17-182 2-177 (187)
125 KOG0074 GTP-binding ADP-ribosy 99.9 3.1E-26 6.6E-31 147.2 13.0 177 1-178 1-179 (185)
126 cd01898 Obg Obg subfamily. Th 99.9 9.2E-26 2E-30 156.0 15.8 155 18-176 2-169 (170)
127 KOG0081 GTPase Rab27, small G 99.9 1.1E-27 2.4E-32 156.9 5.2 164 14-181 7-184 (219)
128 KOG0395 Ras-related GTPase [Ge 99.9 5.3E-26 1.1E-30 159.6 13.6 159 15-179 2-166 (196)
129 PRK15494 era GTPase Era; Provi 99.9 2.9E-25 6.2E-30 168.5 17.9 162 14-185 50-223 (339)
130 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.8E-25 3.9E-30 157.9 15.3 147 17-163 1-175 (202)
131 TIGR00436 era GTP-binding prot 99.9 2E-25 4.4E-30 164.9 15.7 157 18-184 2-170 (270)
132 cd01878 HflX HflX subfamily. 99.9 4.6E-25 1E-29 156.9 16.4 154 13-177 38-204 (204)
133 cd04171 SelB SelB subfamily. 99.9 2.4E-25 5.2E-30 152.9 14.3 151 18-175 2-163 (164)
134 KOG0097 GTPase Rab14, small G 99.9 7.4E-25 1.6E-29 141.2 15.2 162 13-181 8-176 (215)
135 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 4.2E-25 9.2E-30 152.3 15.2 155 18-178 2-166 (168)
136 KOG0088 GTPase Rab21, small G 99.9 2.1E-26 4.6E-31 150.7 7.7 164 13-181 10-178 (218)
137 PRK12299 obgE GTPase CgtA; Rev 99.9 8.8E-25 1.9E-29 164.9 17.6 159 17-180 159-330 (335)
138 cd01890 LepA LepA subfamily. 99.9 4E-25 8.7E-30 154.1 14.3 152 18-177 2-176 (179)
139 TIGR03156 GTP_HflX GTP-binding 99.9 1.2E-24 2.5E-29 165.4 17.7 151 14-176 187-350 (351)
140 PF02421 FeoB_N: Ferrous iron 99.9 9.1E-26 2E-30 151.8 9.7 145 17-173 1-156 (156)
141 KOG0083 GTPase Rab26/Rab37, sm 99.9 9.1E-27 2E-31 148.4 4.4 155 20-180 1-162 (192)
142 cd00881 GTP_translation_factor 99.9 1.6E-24 3.5E-29 152.0 15.6 156 18-178 1-187 (189)
143 COG1159 Era GTPase [General fu 99.9 9.6E-25 2.1E-29 157.7 14.2 163 14-185 4-179 (298)
144 PRK03003 GTP-binding protein D 99.9 3E-24 6.4E-29 169.7 17.3 160 14-179 209-383 (472)
145 TIGR02729 Obg_CgtA Obg family 99.9 3.4E-24 7.3E-29 161.6 16.6 156 17-177 158-328 (329)
146 TIGR02528 EutP ethanolamine ut 99.9 9.3E-25 2E-29 146.8 11.4 134 18-174 2-141 (142)
147 PRK04213 GTP-binding protein; 99.9 1.1E-24 2.4E-29 154.7 12.1 160 13-179 6-193 (201)
148 TIGR00231 small_GTP small GTP- 99.9 1.4E-23 2.9E-28 142.8 17.1 153 16-174 1-160 (161)
149 cd04164 trmE TrmE (MnmE, ThdF, 99.9 9.9E-24 2.1E-28 143.7 15.9 143 17-177 2-156 (157)
150 PRK03003 GTP-binding protein D 99.9 7.9E-24 1.7E-28 167.3 17.4 154 13-179 35-200 (472)
151 TIGR03594 GTPase_EngA ribosome 99.9 9.2E-24 2E-28 165.7 16.1 159 15-179 171-345 (429)
152 cd01881 Obg_like The Obg-like 99.9 4.6E-24 1E-28 148.1 12.7 152 21-176 1-175 (176)
153 cd01889 SelB_euk SelB subfamil 99.9 6.4E-24 1.4E-28 149.7 13.4 158 17-179 1-187 (192)
154 cd01891 TypA_BipA TypA (tyrosi 99.9 1.9E-23 4.1E-28 147.5 15.7 159 17-180 3-190 (194)
155 PF00009 GTP_EFTU: Elongation 99.9 7.6E-24 1.7E-28 148.8 13.5 158 15-178 2-187 (188)
156 cd01879 FeoB Ferrous iron tran 99.9 8.5E-24 1.8E-28 144.4 13.3 145 21-177 1-156 (158)
157 cd00882 Ras_like_GTPase Ras-li 99.9 9.9E-24 2.1E-28 142.2 13.4 150 21-174 1-156 (157)
158 PRK05291 trmE tRNA modificatio 99.9 1.8E-23 3.9E-28 163.9 16.6 147 14-179 213-371 (449)
159 PRK00089 era GTPase Era; Revie 99.9 1.6E-23 3.5E-28 156.7 15.3 162 15-185 4-178 (292)
160 cd01895 EngA2 EngA2 subfamily. 99.9 5E-23 1.1E-27 142.3 16.2 155 16-176 2-173 (174)
161 TIGR00450 mnmE_trmE_thdF tRNA 99.9 9.3E-23 2E-27 159.2 17.9 151 13-180 200-362 (442)
162 cd04105 SR_beta Signal recogni 99.9 1.3E-22 2.7E-27 144.1 17.0 158 18-175 2-202 (203)
163 cd01894 EngA1 EngA1 subfamily. 99.9 4.8E-23 1E-27 140.3 14.2 145 20-177 1-157 (157)
164 PRK12296 obgE GTPase CgtA; Rev 99.9 7E-23 1.5E-27 160.2 16.8 159 16-180 159-342 (500)
165 PRK11058 GTPase HflX; Provisio 99.9 1.8E-22 3.8E-27 156.8 18.7 155 15-179 196-363 (426)
166 PLN00023 GTP-binding protein; 99.9 6.7E-23 1.4E-27 151.9 15.1 121 12-132 17-166 (334)
167 PRK00454 engB GTP-binding prot 99.9 8.6E-23 1.9E-27 144.3 15.0 161 12-179 20-195 (196)
168 PRK12298 obgE GTPase CgtA; Rev 99.9 1.7E-22 3.7E-27 155.3 17.0 164 18-184 161-339 (390)
169 PRK12297 obgE GTPase CgtA; Rev 99.9 2.9E-22 6.4E-27 154.9 18.3 155 18-180 160-329 (424)
170 TIGR03598 GTPase_YsxC ribosome 99.9 4.1E-23 8.9E-28 144.0 12.2 152 10-167 12-179 (179)
171 COG1100 GTPase SAR1 and relate 99.9 1.9E-22 4.1E-27 145.0 15.9 164 16-179 5-186 (219)
172 PRK00093 GTP-binding protein D 99.9 2.8E-22 6.1E-27 157.6 18.1 160 14-179 171-345 (435)
173 PRK15467 ethanolamine utilizat 99.9 1.3E-22 2.8E-27 138.6 13.2 142 18-179 3-148 (158)
174 cd01888 eIF2_gamma eIF2-gamma 99.9 1.4E-22 3.1E-27 143.9 13.6 158 17-178 1-199 (203)
175 COG1160 Predicted GTPases [Gen 99.9 1.2E-22 2.6E-27 154.4 13.6 148 17-177 4-164 (444)
176 KOG0393 Ras-related small GTPa 99.9 8E-24 1.7E-28 145.9 6.2 164 15-179 3-180 (198)
177 PRK05306 infB translation init 99.9 2.5E-22 5.4E-27 164.8 15.9 158 13-176 287-450 (787)
178 TIGR00487 IF-2 translation ini 99.9 3.2E-22 7E-27 160.5 16.2 156 14-175 85-247 (587)
179 cd04163 Era Era subfamily. Er 99.9 6.1E-22 1.3E-26 135.9 15.1 153 15-176 2-167 (168)
180 TIGR03594 GTPase_EngA ribosome 99.9 7.3E-22 1.6E-26 155.0 17.2 149 18-179 1-161 (429)
181 CHL00189 infB translation init 99.9 6.7E-22 1.5E-26 161.0 16.8 159 13-177 241-409 (742)
182 PRK00093 GTP-binding protein D 99.9 6.2E-22 1.3E-26 155.6 16.0 146 17-176 2-160 (435)
183 PRK09518 bifunctional cytidyla 99.9 9.2E-22 2E-26 162.2 17.3 160 14-179 448-622 (712)
184 PF08477 Miro: Miro-like prote 99.9 1.6E-22 3.4E-27 132.0 9.7 111 18-128 1-119 (119)
185 PRK09518 bifunctional cytidyla 99.9 2.3E-21 5E-26 159.9 17.4 152 15-179 274-437 (712)
186 PTZ00099 rab6; Provisional 99.9 4.1E-21 8.9E-26 133.3 16.1 131 42-179 7-143 (176)
187 TIGR01393 lepA GTP-binding pro 99.9 4.1E-21 8.9E-26 154.8 18.3 156 15-178 2-180 (595)
188 COG1160 Predicted GTPases [Gen 99.9 1.3E-21 2.9E-26 148.7 14.4 158 15-178 177-351 (444)
189 TIGR00475 selB selenocysteine- 99.9 1.4E-21 3E-26 157.4 15.3 158 17-179 1-167 (581)
190 cd00880 Era_like Era (E. coli 99.9 1.7E-21 3.7E-26 132.5 13.4 150 21-176 1-162 (163)
191 COG0486 ThdF Predicted GTPase 99.9 4.6E-21 1E-25 146.2 14.9 153 13-180 214-378 (454)
192 KOG4252 GTP-binding protein [S 99.9 3.4E-23 7.5E-28 138.4 1.8 162 14-182 18-185 (246)
193 TIGR00483 EF-1_alpha translati 99.9 3.7E-21 8E-26 150.6 13.4 154 12-168 3-197 (426)
194 cd01896 DRG The developmentall 99.9 2.3E-20 5E-25 135.0 16.5 149 18-177 2-225 (233)
195 PRK09554 feoB ferrous iron tra 99.9 9E-21 2E-25 156.2 15.9 150 15-177 2-167 (772)
196 PRK05433 GTP-binding protein L 99.9 1.9E-20 4.1E-25 151.1 17.3 158 13-178 4-184 (600)
197 PRK12317 elongation factor 1-a 99.9 6.4E-21 1.4E-25 149.3 14.2 154 13-169 3-196 (425)
198 PF10662 PduV-EutP: Ethanolami 99.9 8.9E-21 1.9E-25 125.0 12.2 135 18-174 3-142 (143)
199 cd01884 EF_Tu EF-Tu subfamily. 99.9 1.6E-20 3.5E-25 132.2 14.0 145 16-166 2-171 (195)
200 KOG0077 Vesicle coat complex C 99.9 4.8E-21 1E-25 126.6 10.1 169 9-177 13-192 (193)
201 TIGR00491 aIF-2 translation in 99.9 2.8E-20 6E-25 149.3 16.0 156 15-178 3-216 (590)
202 TIGR00437 feoB ferrous iron tr 99.9 8.3E-21 1.8E-25 153.1 12.9 142 23-177 1-154 (591)
203 COG0218 Predicted GTPase [Gene 99.9 4.7E-20 1E-24 126.9 14.7 158 13-179 21-198 (200)
204 TIGR01394 TypA_BipA GTP-bindin 99.9 7E-20 1.5E-24 147.5 17.2 157 17-178 2-191 (594)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 2E-20 4.4E-25 133.4 12.0 147 18-169 1-185 (208)
206 PRK04000 translation initiatio 99.8 4.9E-20 1.1E-24 143.3 14.7 161 12-178 5-201 (411)
207 TIGR03680 eif2g_arch translati 99.8 4.7E-20 1E-24 143.4 14.5 161 14-178 2-196 (406)
208 cd04168 TetM_like Tet(M)-like 99.8 1.1E-19 2.5E-24 131.6 15.5 156 18-178 1-235 (237)
209 COG2229 Predicted GTPase [Gene 99.8 1.8E-19 4E-24 121.5 15.2 156 13-176 7-176 (187)
210 cd04165 GTPBP1_like GTPBP1-lik 99.8 6.8E-20 1.5E-24 131.6 14.1 153 18-175 1-220 (224)
211 PRK10218 GTP-binding protein; 99.8 9E-20 2E-24 146.8 16.1 159 15-178 4-195 (607)
212 cd01876 YihA_EngB The YihA (En 99.8 1.2E-19 2.6E-24 124.7 14.1 153 18-176 1-169 (170)
213 KOG1423 Ras-like GTPase ERA [C 99.8 1.9E-19 4.1E-24 130.3 14.5 169 12-184 68-277 (379)
214 cd01883 EF1_alpha Eukaryotic e 99.8 4.7E-20 1E-24 132.4 11.4 146 18-167 1-194 (219)
215 PRK04004 translation initiatio 99.8 2.1E-19 4.5E-24 144.6 16.1 157 13-177 3-217 (586)
216 KOG3883 Ras family small GTPas 99.8 3.6E-19 7.8E-24 116.3 13.7 161 14-179 7-176 (198)
217 PRK10512 selenocysteinyl-tRNA- 99.8 1.8E-19 3.9E-24 145.7 15.2 158 17-179 1-167 (614)
218 COG2262 HflX GTPases [General 99.8 8.3E-19 1.8E-23 131.9 17.3 161 9-180 185-358 (411)
219 PRK12735 elongation factor Tu; 99.8 3.4E-19 7.3E-24 138.2 14.7 162 10-177 6-202 (396)
220 PRK12736 elongation factor Tu; 99.8 4.5E-19 9.7E-24 137.4 14.6 161 12-178 8-201 (394)
221 COG0370 FeoB Fe2+ transport sy 99.8 3.1E-19 6.6E-24 141.6 12.6 154 15-180 2-166 (653)
222 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 5.1E-19 1.1E-23 126.7 11.7 165 18-184 1-182 (232)
223 KOG1489 Predicted GTP-binding 99.8 8.7E-19 1.9E-23 127.4 12.5 152 16-175 196-364 (366)
224 CHL00071 tufA elongation facto 99.8 1.3E-18 2.9E-23 135.4 14.2 148 12-165 8-180 (409)
225 PLN03126 Elongation factor Tu; 99.8 2.2E-18 4.7E-23 135.7 14.5 151 9-165 74-249 (478)
226 cd04170 EF-G_bact Elongation f 99.8 6.9E-18 1.5E-22 124.8 16.2 110 18-132 1-131 (268)
227 COG1084 Predicted GTPase [Gene 99.8 5.8E-18 1.3E-22 124.0 15.4 155 15-177 167-335 (346)
228 COG0532 InfB Translation initi 99.8 4.2E-18 9E-23 131.8 15.4 158 14-177 3-169 (509)
229 PRK00049 elongation factor Tu; 99.8 3.7E-18 8.1E-23 132.3 14.6 161 11-177 7-202 (396)
230 cd01886 EF-G Elongation factor 99.8 5.3E-18 1.1E-22 125.0 14.5 110 18-132 1-131 (270)
231 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1E-18 2.2E-23 118.1 8.8 158 15-180 9-171 (216)
232 TIGR00485 EF-Tu translation el 99.8 6.3E-18 1.4E-22 131.2 14.3 147 12-164 8-179 (394)
233 cd04169 RF3 RF3 subfamily. Pe 99.8 1E-17 2.2E-22 123.4 14.6 113 17-134 3-140 (267)
234 COG1163 DRG Predicted GTPase [ 99.8 7.8E-18 1.7E-22 123.0 13.2 155 13-178 60-289 (365)
235 PF09439 SRPRB: Signal recogni 99.8 1E-18 2.2E-23 120.2 8.2 128 15-143 2-138 (181)
236 cd04167 Snu114p Snu114p subfam 99.8 2.2E-18 4.8E-23 123.3 10.2 108 18-130 2-136 (213)
237 PRK00741 prfC peptide chain re 99.8 2.9E-17 6.3E-22 130.9 17.5 115 13-132 7-146 (526)
238 PTZ00141 elongation factor 1- 99.8 4.7E-18 1E-22 133.2 12.7 152 12-168 3-203 (446)
239 PRK13351 elongation factor G; 99.8 1.4E-17 3E-22 137.4 16.1 115 13-132 5-140 (687)
240 cd04104 p47_IIGP_like p47 (47- 99.8 4.7E-18 1E-22 120.2 11.2 157 16-179 1-185 (197)
241 PRK05124 cysN sulfate adenylyl 99.8 7E-18 1.5E-22 133.2 13.0 153 13-169 24-216 (474)
242 PF01926 MMR_HSR1: 50S ribosom 99.8 3.7E-17 7.9E-22 106.1 14.2 103 18-126 1-116 (116)
243 TIGR02034 CysN sulfate adenyly 99.8 7.8E-18 1.7E-22 130.9 13.0 147 17-168 1-187 (406)
244 PLN03127 Elongation factor Tu; 99.8 1.2E-17 2.7E-22 130.8 14.1 159 13-177 58-251 (447)
245 PLN00043 elongation factor 1-a 99.8 1.3E-17 2.7E-22 130.8 13.9 150 13-168 4-203 (447)
246 KOG1191 Mitochondrial GTPase [ 99.8 1.2E-17 2.5E-22 127.8 12.8 166 12-179 264-451 (531)
247 KOG0090 Signal recognition par 99.8 4.7E-17 1E-21 112.3 14.4 169 7-176 29-237 (238)
248 PRK05506 bifunctional sulfate 99.8 1.4E-17 2.9E-22 136.2 13.8 152 12-168 20-211 (632)
249 KOG1673 Ras GTPases [General f 99.8 6.9E-18 1.5E-22 110.6 9.5 163 15-179 19-187 (205)
250 KOG1145 Mitochondrial translat 99.8 4.8E-17 1E-21 125.9 15.3 159 13-177 150-315 (683)
251 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 1.1E-16 2.3E-21 113.3 14.7 162 17-180 1-186 (196)
252 KOG4423 GTP-binding protein-li 99.7 3.9E-20 8.5E-25 124.5 -2.8 162 13-180 22-196 (229)
253 KOG1707 Predicted Ras related/ 99.7 3.8E-18 8.2E-23 132.7 7.4 162 13-178 6-175 (625)
254 COG0536 Obg Predicted GTPase [ 99.7 4E-17 8.6E-22 120.1 12.3 155 18-180 161-335 (369)
255 PTZ00327 eukaryotic translatio 99.7 5.7E-17 1.2E-21 126.9 13.6 163 13-178 31-233 (460)
256 cd01885 EF2 EF2 (for archaea a 99.7 4.4E-17 9.4E-22 116.7 10.9 108 18-130 2-138 (222)
257 PRK12739 elongation factor G; 99.7 2.9E-16 6.3E-21 129.5 16.9 115 13-132 5-140 (691)
258 KOG0462 Elongation factor-type 99.7 8.9E-17 1.9E-21 124.4 12.2 157 14-178 58-235 (650)
259 TIGR00484 EF-G translation elo 99.7 2.2E-16 4.9E-21 130.2 14.8 116 13-133 7-143 (689)
260 cd01899 Ygr210 Ygr210 subfamil 99.7 5.6E-16 1.2E-20 116.4 15.3 155 19-180 1-271 (318)
261 TIGR00503 prfC peptide chain r 99.7 8.9E-17 1.9E-21 128.1 11.1 116 12-132 7-147 (527)
262 PRK00007 elongation factor G; 99.7 8.7E-16 1.9E-20 126.7 16.7 115 13-132 7-142 (693)
263 COG5256 TEF1 Translation elong 99.7 1.4E-16 3.1E-21 119.9 10.6 154 12-168 3-201 (428)
264 cd00066 G-alpha G protein alph 99.7 5.9E-16 1.3E-20 116.8 13.6 135 46-180 147-313 (317)
265 smart00275 G_alpha G protein a 99.7 9.6E-16 2.1E-20 116.5 14.3 135 46-180 170-336 (342)
266 PRK09602 translation-associate 99.7 3.3E-15 7.2E-20 115.3 15.9 79 16-94 1-113 (396)
267 PRK12740 elongation factor G; 99.7 2.8E-15 6.2E-20 123.6 14.5 106 22-132 1-127 (668)
268 PRK09866 hypothetical protein; 99.7 5.7E-15 1.2E-19 117.6 15.1 113 60-175 230-350 (741)
269 COG3596 Predicted GTPase [Gene 99.6 1.1E-15 2.3E-20 109.8 9.5 163 13-178 36-222 (296)
270 COG4917 EutP Ethanolamine util 99.6 8.1E-16 1.8E-20 97.4 7.6 138 18-176 3-144 (148)
271 COG0481 LepA Membrane GTPase L 99.6 4.2E-15 9.1E-20 113.7 10.4 155 13-178 6-186 (603)
272 cd01850 CDC_Septin CDC/Septin. 99.6 5.6E-15 1.2E-19 109.3 10.9 112 15-132 3-158 (276)
273 PF04548 AIG1: AIG1 family; I 99.6 2.1E-14 4.5E-19 102.7 12.2 162 17-180 1-188 (212)
274 COG1217 TypA Predicted membran 99.6 1.3E-14 2.8E-19 110.8 11.4 159 15-178 4-195 (603)
275 KOG0082 G-protein alpha subuni 99.6 4E-14 8.7E-19 106.1 13.6 136 45-180 180-346 (354)
276 cd01882 BMS1 Bms1. Bms1 is an 99.6 3.2E-14 7E-19 102.5 11.9 144 13-165 36-183 (225)
277 PRK13768 GTPase; Provisional 99.6 4.3E-15 9.2E-20 108.8 7.4 118 60-178 97-247 (253)
278 PRK09435 membrane ATPase/prote 99.6 1.4E-14 3E-19 109.1 9.7 154 13-178 53-260 (332)
279 PRK14845 translation initiatio 99.6 9.8E-14 2.1E-18 117.2 14.9 142 28-177 473-672 (1049)
280 KOG1532 GTPase XAB1, interacts 99.6 9.9E-15 2.2E-19 104.7 7.4 118 60-180 116-266 (366)
281 TIGR00490 aEF-2 translation el 99.6 2.7E-14 5.8E-19 118.3 11.1 116 11-131 14-152 (720)
282 KOG1490 GTP-binding protein CR 99.6 1.5E-14 3.2E-19 111.3 8.7 163 13-178 165-341 (620)
283 cd01853 Toc34_like Toc34-like 99.6 2.3E-13 5E-18 99.2 14.1 119 12-132 27-164 (249)
284 TIGR00991 3a0901s02IAP34 GTP-b 99.5 5.7E-13 1.2E-17 98.8 15.4 117 13-131 35-167 (313)
285 PF03029 ATP_bind_1: Conserved 99.5 1.1E-13 2.3E-18 100.3 10.0 115 61-177 92-236 (238)
286 PLN00116 translation elongatio 99.5 1.6E-13 3.5E-18 115.3 12.3 115 11-130 14-163 (843)
287 PTZ00416 elongation factor 2; 99.5 1.5E-13 3.3E-18 115.3 11.8 113 13-130 16-157 (836)
288 PTZ00258 GTP-binding protein; 99.5 1.1E-12 2.4E-17 100.6 14.1 85 10-94 15-126 (390)
289 KOG0458 Elongation factor 1 al 99.5 2.6E-13 5.6E-18 106.1 9.9 154 12-168 173-372 (603)
290 KOG1144 Translation initiation 99.5 5.2E-13 1.1E-17 106.9 11.2 160 13-180 472-689 (1064)
291 KOG0461 Selenocysteine-specifi 99.5 2.6E-12 5.7E-17 95.2 12.7 160 13-177 4-192 (522)
292 COG3276 SelB Selenocysteine-sp 99.4 2.9E-12 6.2E-17 97.7 12.5 154 18-177 2-161 (447)
293 COG2895 CysN GTPases - Sulfate 99.4 3.2E-12 6.9E-17 94.9 11.8 151 13-167 3-192 (431)
294 TIGR00073 hypB hydrogenase acc 99.4 1.4E-12 3.1E-17 92.9 9.3 153 9-177 15-206 (207)
295 COG5257 GCD11 Translation init 99.4 1.9E-12 4.1E-17 95.0 9.7 159 14-178 8-202 (415)
296 PRK07560 elongation factor EF- 99.4 1.9E-12 4E-17 107.7 11.0 113 13-130 17-152 (731)
297 PRK09601 GTP-binding protein Y 99.4 5.9E-12 1.3E-16 95.7 12.6 78 17-94 3-107 (364)
298 TIGR00750 lao LAO/AO transport 99.4 9.5E-12 2.1E-16 93.4 13.2 108 58-177 125-237 (300)
299 PF00503 G-alpha: G-protein al 99.4 6E-12 1.3E-16 97.8 12.4 131 47-177 222-389 (389)
300 TIGR00101 ureG urease accessor 99.4 3.3E-12 7.1E-17 90.3 9.8 101 60-178 92-196 (199)
301 PF05049 IIGP: Interferon-indu 99.4 9.6E-12 2.1E-16 94.6 11.9 159 13-178 32-218 (376)
302 cd01900 YchF YchF subfamily. 99.4 6.2E-12 1.3E-16 92.6 10.5 76 19-94 1-103 (274)
303 KOG1486 GTP-binding protein DR 99.4 7.4E-12 1.6E-16 89.1 9.2 155 13-178 59-288 (364)
304 KOG0410 Predicted GTP binding 99.4 5.7E-12 1.2E-16 92.6 8.8 152 12-179 174-342 (410)
305 COG4108 PrfC Peptide chain rel 99.3 2.3E-11 5E-16 92.6 12.0 114 13-131 9-147 (528)
306 smart00053 DYNc Dynamin, GTPas 99.3 1.2E-10 2.5E-15 84.3 15.1 138 14-157 24-230 (240)
307 KOG3905 Dynein light intermedi 99.3 3.3E-11 7.2E-16 88.7 12.2 164 16-179 52-291 (473)
308 TIGR02836 spore_IV_A stage IV 99.3 5.5E-11 1.2E-15 90.8 13.6 142 12-162 13-219 (492)
309 COG0480 FusA Translation elong 99.3 1.9E-11 4.1E-16 100.0 12.0 115 13-132 7-143 (697)
310 TIGR00157 ribosome small subun 99.3 7.2E-12 1.6E-16 91.4 7.8 95 71-175 24-120 (245)
311 KOG3886 GTP-binding protein [S 99.3 1.2E-11 2.7E-16 86.8 7.8 160 16-178 4-178 (295)
312 KOG1487 GTP-binding protein DR 99.3 6.7E-12 1.4E-16 89.7 6.1 150 17-178 60-281 (358)
313 KOG3887 Predicted small GTPase 99.3 2.6E-11 5.7E-16 85.9 8.7 165 16-184 27-208 (347)
314 PRK10463 hydrogenase nickel in 99.3 1.4E-12 3.1E-17 96.0 2.2 56 117-176 230-287 (290)
315 TIGR00993 3a0901s04IAP86 chlor 99.3 1.6E-10 3.5E-15 92.9 13.8 115 16-132 118-251 (763)
316 PF03308 ArgK: ArgK protein; 99.3 2.6E-11 5.6E-16 87.3 7.7 153 13-177 26-229 (266)
317 PF00735 Septin: Septin; Inte 99.3 9E-11 1.9E-15 87.1 10.9 120 16-140 4-165 (281)
318 PF00350 Dynamin_N: Dynamin fa 99.2 9.1E-11 2E-15 80.8 9.2 64 60-127 101-168 (168)
319 KOG0468 U5 snRNP-specific prot 99.2 6.3E-11 1.4E-15 94.3 8.7 112 13-129 125-261 (971)
320 smart00010 small_GTPase Small 99.2 3.3E-11 7E-16 78.7 5.8 113 17-167 1-115 (124)
321 KOG1707 Predicted Ras related/ 99.2 5E-10 1.1E-14 88.1 13.0 153 11-177 420-582 (625)
322 KOG0085 G protein subunit Galp 99.2 2.3E-11 5E-16 85.7 4.8 135 46-180 185-351 (359)
323 COG0378 HypB Ni2+-binding GTPa 99.2 3.6E-11 7.8E-16 82.7 5.4 79 85-177 119-200 (202)
324 PF05783 DLIC: Dynein light in 99.2 3.8E-10 8.2E-15 88.8 11.6 163 15-179 24-265 (472)
325 COG0012 Predicted GTPase, prob 99.2 5.2E-10 1.1E-14 84.3 11.5 80 16-95 2-109 (372)
326 cd01859 MJ1464 MJ1464. This f 99.2 1.1E-10 2.3E-15 79.6 6.9 95 73-178 2-96 (156)
327 COG0050 TufB GTPases - transla 99.1 1.5E-09 3.1E-14 79.2 11.4 162 10-177 6-200 (394)
328 KOG0099 G protein subunit Galp 99.1 7.4E-10 1.6E-14 79.5 9.7 133 47-179 189-370 (379)
329 COG5019 CDC3 Septin family pro 99.1 3.2E-09 6.9E-14 79.7 12.7 128 10-142 17-187 (373)
330 COG1703 ArgK Putative periplas 99.1 4.1E-10 8.9E-15 82.3 7.7 108 59-178 143-254 (323)
331 KOG2655 Septin family protein 99.1 5.9E-09 1.3E-13 78.7 13.0 129 9-142 14-183 (366)
332 cd01855 YqeH YqeH. YqeH is an 99.1 6.7E-10 1.5E-14 78.1 7.3 100 70-178 21-125 (190)
333 cd04178 Nucleostemin_like Nucl 99.1 5.9E-10 1.3E-14 77.0 6.6 57 14-70 115-172 (172)
334 cd01858 NGP_1 NGP-1. Autoanti 99.0 6.9E-10 1.5E-14 75.7 6.9 57 14-70 100-157 (157)
335 COG5258 GTPBP1 GTPase [General 99.0 6.6E-09 1.4E-13 78.4 11.1 164 10-179 111-339 (527)
336 PRK12289 GTPase RsgA; Reviewed 99.0 1.3E-09 2.8E-14 83.2 7.4 90 77-176 83-173 (352)
337 KOG2486 Predicted GTPase [Gene 98.9 1.7E-09 3.6E-14 78.3 5.4 159 13-176 133-314 (320)
338 KOG1547 Septin CDC10 and relat 98.9 2.5E-08 5.3E-13 71.0 11.0 148 10-164 40-229 (336)
339 KOG0705 GTPase-activating prot 98.9 1.6E-09 3.5E-14 84.8 5.6 162 12-179 26-190 (749)
340 cd01854 YjeQ_engC YjeQ/EngC. 98.9 4.3E-09 9.3E-14 78.6 7.7 88 78-175 73-161 (287)
341 KOG1954 Endocytosis/signaling 98.9 1.7E-08 3.7E-13 75.9 10.6 121 16-140 58-234 (532)
342 cd01858 NGP_1 NGP-1. Autoanti 98.9 8.4E-09 1.8E-13 70.3 7.7 90 80-177 5-94 (157)
343 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 6.3E-09 1.4E-13 69.7 6.5 52 18-70 85-138 (141)
344 KOG0459 Polypeptide release fa 98.9 2.9E-09 6.4E-14 80.6 5.2 158 13-170 76-278 (501)
345 PRK00098 GTPase RsgA; Reviewed 98.9 6E-09 1.3E-13 78.3 6.7 85 80-174 77-163 (298)
346 PRK09563 rbgA GTPase YlqF; Rev 98.9 8E-09 1.7E-13 77.2 7.2 58 14-71 119-177 (287)
347 cd01849 YlqF_related_GTPase Yl 98.9 7.6E-09 1.6E-13 70.4 6.3 83 85-177 1-84 (155)
348 cd01851 GBP Guanylate-binding 98.9 1.1E-07 2.3E-12 68.6 12.5 84 14-97 5-105 (224)
349 COG1161 Predicted GTPases [Gen 98.8 8.5E-09 1.8E-13 78.1 6.8 58 14-71 130-188 (322)
350 KOG1491 Predicted GTP-binding 98.8 7.6E-08 1.7E-12 71.6 11.2 86 10-95 14-126 (391)
351 TIGR03596 GTPase_YlqF ribosome 98.8 1.4E-08 3E-13 75.5 7.2 100 67-179 4-104 (276)
352 COG5192 BMS1 GTP-binding prote 98.8 4.2E-08 9.2E-13 77.6 10.1 143 13-162 66-210 (1077)
353 cd01856 YlqF YlqF. Proteins o 98.8 1.1E-08 2.5E-13 70.7 6.3 98 67-177 2-100 (171)
354 cd01859 MJ1464 MJ1464. This f 98.8 2.6E-08 5.7E-13 67.8 8.0 58 13-70 98-156 (156)
355 TIGR03596 GTPase_YlqF ribosome 98.8 1.1E-08 2.5E-13 76.0 6.5 56 14-70 116-173 (276)
356 cd01856 YlqF YlqF. Proteins o 98.8 1.5E-08 3.3E-13 70.1 6.5 56 14-70 113-170 (171)
357 PRK12288 GTPase RsgA; Reviewed 98.8 3.7E-08 8.1E-13 75.2 8.9 89 81-176 118-206 (347)
358 KOG0467 Translation elongation 98.8 2.7E-08 5.8E-13 80.7 8.1 113 11-128 4-135 (887)
359 KOG0447 Dynamin-like GTP bindi 98.8 3.5E-07 7.6E-12 72.3 13.9 100 60-163 412-526 (980)
360 TIGR03597 GTPase_YqeH ribosome 98.8 1.8E-08 3.8E-13 77.6 6.5 97 70-176 50-151 (360)
361 TIGR03597 GTPase_YqeH ribosome 98.7 3.6E-08 7.7E-13 76.0 7.4 116 16-137 154-286 (360)
362 cd01855 YqeH YqeH. YqeH is an 98.7 1.8E-08 3.9E-13 70.9 5.3 56 15-70 126-190 (190)
363 cd01849 YlqF_related_GTPase Yl 98.7 3E-08 6.5E-13 67.5 6.0 56 14-70 98-155 (155)
364 TIGR00092 GTP-binding protein 98.7 1E-07 2.2E-12 72.9 9.3 79 17-95 3-109 (368)
365 PRK09563 rbgA GTPase YlqF; Rev 98.7 4.4E-08 9.5E-13 73.3 6.6 101 66-179 6-107 (287)
366 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 2.8E-08 6.1E-13 66.5 5.0 79 78-165 6-84 (141)
367 KOG1143 Predicted translation 98.7 7.9E-08 1.7E-12 72.6 7.7 151 16-171 167-381 (591)
368 KOG0460 Mitochondrial translat 98.7 3.8E-07 8.2E-12 68.1 10.9 146 11-161 49-218 (449)
369 KOG0448 Mitofusin 1 GTPase, in 98.6 1E-06 2.2E-11 71.1 11.3 115 13-132 106-276 (749)
370 PRK14974 cell division protein 98.6 1.5E-07 3.2E-12 71.5 6.1 97 59-172 222-324 (336)
371 COG1618 Predicted nucleotide k 98.6 6.3E-06 1.4E-10 55.4 12.8 24 14-37 3-26 (179)
372 PRK10416 signal recognition pa 98.5 9.5E-07 2.1E-11 66.9 9.9 140 15-171 113-303 (318)
373 PRK12288 GTPase RsgA; Reviewed 98.5 2.6E-07 5.6E-12 70.7 7.0 56 18-74 207-271 (347)
374 TIGR03348 VI_IcmF type VI secr 98.5 1.4E-06 3.1E-11 76.4 12.1 112 17-131 112-257 (1169)
375 PRK13796 GTPase YqeH; Provisio 98.5 2.2E-07 4.8E-12 71.7 6.4 65 7-71 151-221 (365)
376 KOG0466 Translation initiation 98.5 2.1E-07 4.5E-12 68.6 5.5 163 13-178 35-241 (466)
377 KOG0465 Mitochondrial elongati 98.5 1E-07 2.3E-12 75.7 4.0 121 15-140 38-179 (721)
378 TIGR00064 ftsY signal recognit 98.5 5.4E-07 1.2E-11 66.8 7.3 97 58-172 153-262 (272)
379 PF03193 DUF258: Protein of un 98.5 9.9E-08 2.1E-12 64.7 3.0 57 17-74 36-101 (161)
380 TIGR01425 SRP54_euk signal rec 98.5 2.6E-06 5.6E-11 66.7 10.7 110 16-132 100-254 (429)
381 PRK12289 GTPase RsgA; Reviewed 98.4 2.9E-07 6.3E-12 70.5 5.0 54 18-72 174-236 (352)
382 TIGR00157 ribosome small subun 98.4 3.1E-07 6.8E-12 67.1 4.9 53 17-73 121-184 (245)
383 KOG0464 Elongation factor G [T 98.4 7.6E-08 1.7E-12 73.6 1.6 112 16-132 37-169 (753)
384 PRK13796 GTPase YqeH; Provisio 98.4 2.1E-06 4.5E-11 66.4 8.2 96 71-177 57-158 (365)
385 KOG0463 GTP-binding protein GP 98.4 3.2E-06 7E-11 64.2 8.4 157 16-178 133-357 (641)
386 KOG3859 Septins (P-loop GTPase 98.3 2.8E-06 6E-11 62.0 7.6 128 8-140 34-199 (406)
387 cd03112 CobW_like The function 98.3 3.8E-06 8.3E-11 57.3 7.3 22 18-39 2-23 (158)
388 PRK01889 GTPase RsgA; Reviewed 98.3 5.8E-06 1.2E-10 63.7 8.9 84 81-174 110-193 (356)
389 cd01854 YjeQ_engC YjeQ/EngC. 98.3 1.4E-06 3.1E-11 65.2 5.0 57 17-74 162-227 (287)
390 PRK14722 flhF flagellar biosyn 98.3 2.2E-06 4.8E-11 65.9 6.1 116 17-132 138-296 (374)
391 PF09547 Spore_IV_A: Stage IV 98.3 6.5E-05 1.4E-09 58.2 13.5 149 5-162 5-219 (492)
392 KOG1424 Predicted GTP-binding 98.2 1.3E-06 2.9E-11 68.4 4.6 54 16-69 314-368 (562)
393 PRK00098 GTPase RsgA; Reviewed 98.2 3.3E-06 7.2E-11 63.6 6.3 55 17-72 165-228 (298)
394 PF00448 SRP54: SRP54-type pro 98.1 5.5E-06 1.2E-10 58.5 5.5 67 59-132 83-155 (196)
395 COG1162 Predicted GTPases [Gen 98.1 3.9E-06 8.5E-11 62.2 4.6 56 18-74 166-230 (301)
396 PF05621 TniB: Bacterial TniB 98.1 3.2E-05 6.9E-10 57.6 9.2 111 8-127 53-190 (302)
397 cd03115 SRP The signal recogni 98.1 7.1E-06 1.5E-10 56.8 5.4 67 59-132 82-154 (173)
398 cd03114 ArgK-like The function 98.1 5.7E-06 1.2E-10 55.8 4.7 58 59-128 91-148 (148)
399 KOG0469 Elongation factor 2 [T 98.1 3.5E-06 7.7E-11 66.1 3.8 128 10-142 13-178 (842)
400 COG3523 IcmF Type VI protein s 98.1 6.3E-05 1.4E-09 65.4 11.5 112 19-132 128-271 (1188)
401 PRK14721 flhF flagellar biosyn 98.0 6.4E-06 1.4E-10 64.4 4.6 110 16-132 191-341 (420)
402 PRK12727 flagellar biosynthesi 98.0 1.3E-05 2.8E-10 64.1 6.2 110 16-132 350-499 (559)
403 KOG2484 GTPase [General functi 98.0 2.1E-06 4.5E-11 65.4 1.5 56 14-70 250-307 (435)
404 KOG2485 Conserved ATP/GTP bind 98.0 1.2E-05 2.6E-10 59.6 4.9 58 13-70 140-206 (335)
405 KOG1534 Putative transcription 98.0 9.3E-05 2E-09 52.1 8.6 117 60-177 98-250 (273)
406 PRK13695 putative NTPase; Prov 97.9 0.00029 6.3E-09 48.8 11.0 21 17-37 1-21 (174)
407 COG1419 FlhF Flagellar GTP-bin 97.9 2.9E-05 6.3E-10 59.9 6.3 111 15-132 202-353 (407)
408 PRK11889 flhF flagellar biosyn 97.9 7.5E-05 1.6E-09 57.9 8.3 110 16-132 241-392 (436)
409 PF13401 AAA_22: AAA domain; P 97.9 1.8E-05 3.8E-10 52.0 4.4 24 17-40 5-28 (131)
410 cd03222 ABC_RNaseL_inhibitor T 97.9 0.00014 3E-09 50.6 8.7 85 17-109 26-117 (177)
411 PF06858 NOG1: Nucleolar GTP-b 97.9 6.6E-05 1.4E-09 41.5 5.6 44 83-128 13-58 (58)
412 COG0523 Putative GTPases (G3E 97.9 0.0003 6.5E-09 53.4 11.1 92 60-160 85-184 (323)
413 PRK04195 replication factor C 97.9 0.00026 5.7E-09 56.9 10.8 35 5-39 28-62 (482)
414 PRK00771 signal recognition pa 97.8 6.8E-05 1.5E-09 59.2 7.0 111 15-132 94-247 (437)
415 PRK06995 flhF flagellar biosyn 97.8 7.1E-05 1.5E-09 59.6 7.1 22 17-38 257-278 (484)
416 cd01983 Fer4_NifH The Fer4_Nif 97.8 0.00018 3.9E-09 44.3 7.6 97 19-125 2-99 (99)
417 KOG2423 Nucleolar GTPase [Gene 97.8 7.9E-06 1.7E-10 62.4 1.6 87 8-97 299-388 (572)
418 COG1116 TauB ABC-type nitrate/ 97.8 1.5E-05 3.3E-10 57.4 2.9 24 18-41 31-54 (248)
419 PRK12726 flagellar biosynthesi 97.8 0.00011 2.4E-09 56.6 7.7 22 16-37 206-227 (407)
420 PRK14723 flhF flagellar biosyn 97.8 4E-05 8.7E-10 63.9 5.7 111 17-132 186-338 (767)
421 PRK10751 molybdopterin-guanine 97.8 7E-05 1.5E-09 51.7 6.0 53 14-72 4-56 (173)
422 PF13207 AAA_17: AAA domain; P 97.8 2E-05 4.2E-10 51.1 3.1 22 18-39 1-22 (121)
423 cd00009 AAA The AAA+ (ATPases 97.8 0.00058 1.3E-08 45.1 10.2 28 13-40 16-43 (151)
424 PRK10867 signal recognition pa 97.8 5E-05 1.1E-09 59.8 5.6 67 59-132 183-255 (433)
425 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.8 0.00023 4.9E-09 47.8 8.0 64 18-89 28-94 (144)
426 PRK11537 putative GTP-binding 97.8 0.00038 8.2E-09 52.9 9.9 23 17-39 5-27 (318)
427 cd03216 ABC_Carb_Monos_I This 97.7 0.00022 4.7E-09 48.9 7.6 25 18-42 28-52 (163)
428 PRK08118 topology modulation p 97.7 2.9E-05 6.3E-10 53.5 3.0 23 17-39 2-24 (167)
429 PRK12724 flagellar biosynthesi 97.7 7.8E-05 1.7E-09 58.2 5.6 110 16-132 223-374 (432)
430 TIGR00959 ffh signal recogniti 97.7 4.4E-05 9.4E-10 60.1 4.2 67 59-132 182-254 (428)
431 KOG1533 Predicted GTPase [Gene 97.7 2.2E-05 4.8E-10 56.0 2.2 69 60-132 97-178 (290)
432 PRK05703 flhF flagellar biosyn 97.7 5.7E-05 1.2E-09 59.6 4.7 67 59-132 299-372 (424)
433 PF13671 AAA_33: AAA domain; P 97.7 3.2E-05 6.9E-10 51.6 2.9 21 19-39 2-22 (143)
434 PRK12723 flagellar biosynthesi 97.7 0.00013 2.7E-09 56.8 6.2 110 16-132 174-327 (388)
435 cd04178 Nucleostemin_like Nucl 97.7 9.8E-05 2.1E-09 51.1 5.0 55 85-142 1-55 (172)
436 PRK07261 topology modulation p 97.7 3.9E-05 8.4E-10 53.1 3.0 22 18-39 2-23 (171)
437 COG0563 Adk Adenylate kinase a 97.7 4E-05 8.7E-10 53.3 3.0 23 17-39 1-23 (178)
438 PF05729 NACHT: NACHT domain 97.6 0.00049 1.1E-08 46.8 8.0 22 18-39 2-23 (166)
439 KOG0780 Signal recognition par 97.6 0.00026 5.5E-09 54.3 6.8 91 13-103 98-233 (483)
440 TIGR01618 phage_P_loop phage n 97.6 0.00055 1.2E-08 49.2 8.3 26 14-39 10-35 (220)
441 PF00005 ABC_tran: ABC transpo 97.6 6.2E-05 1.4E-09 49.9 3.3 24 18-41 13-36 (137)
442 COG0541 Ffh Signal recognition 97.6 0.00033 7.1E-09 54.5 7.3 97 13-109 97-238 (451)
443 cd02019 NK Nucleoside/nucleoti 97.6 6.8E-05 1.5E-09 43.7 2.8 21 19-39 2-22 (69)
444 PF13555 AAA_29: P-loop contai 97.6 7.3E-05 1.6E-09 42.3 2.8 20 18-37 25-44 (62)
445 COG1162 Predicted GTPases [Gen 97.6 0.00076 1.6E-08 50.3 8.8 87 82-176 78-165 (301)
446 cd02038 FleN-like FleN is a me 97.6 0.001 2.3E-08 44.3 8.8 101 21-129 5-109 (139)
447 KOG0066 eIF2-interacting prote 97.6 0.0012 2.6E-08 51.8 10.2 93 16-108 613-749 (807)
448 COG0552 FtsY Signal recognitio 97.6 0.00026 5.7E-09 53.3 6.3 25 13-37 136-160 (340)
449 cd03246 ABCC_Protease_Secretio 97.6 0.00072 1.6E-08 46.8 8.2 24 18-41 30-53 (173)
450 COG1136 SalX ABC-type antimicr 97.6 6.3E-05 1.4E-09 53.9 2.9 25 18-42 33-57 (226)
451 PRK06731 flhF flagellar biosyn 97.6 0.00054 1.2E-08 50.8 7.8 110 16-132 75-226 (270)
452 PF13521 AAA_28: AAA domain; P 97.5 5E-05 1.1E-09 52.0 2.1 22 18-39 1-22 (163)
453 cd00267 ABC_ATPase ABC (ATP-bi 97.5 0.0017 3.7E-08 44.1 9.6 24 18-41 27-50 (157)
454 COG4525 TauB ABC-type taurine 97.5 7.2E-05 1.6E-09 52.3 2.7 24 18-41 33-56 (259)
455 COG3839 MalK ABC-type sugar tr 97.5 7.1E-05 1.5E-09 56.9 2.9 23 19-41 32-54 (338)
456 COG1763 MobB Molybdopterin-gua 97.5 0.0011 2.3E-08 45.2 8.2 51 18-74 4-54 (161)
457 PF03205 MobB: Molybdopterin g 97.5 8E-05 1.7E-09 49.8 2.7 22 18-39 2-23 (140)
458 KOG0781 Signal recognition par 97.5 0.00058 1.3E-08 53.7 7.6 127 5-132 367-545 (587)
459 PF00004 AAA: ATPase family as 97.5 9.5E-05 2.1E-09 48.4 2.9 21 19-39 1-21 (132)
460 COG1126 GlnQ ABC-type polar am 97.5 0.00012 2.6E-09 51.8 3.5 24 18-41 30-53 (240)
461 cd02042 ParA ParA and ParB of 97.5 0.0013 2.8E-08 41.3 7.9 81 19-107 2-84 (104)
462 cd03116 MobB Molybdenum is an 97.5 0.00014 3.1E-09 49.6 3.5 52 17-74 2-53 (159)
463 COG1120 FepC ABC-type cobalami 97.5 9.9E-05 2.1E-09 54.0 2.9 21 18-38 30-50 (258)
464 PF03215 Rad17: Rad17 cell cyc 97.5 0.002 4.3E-08 52.2 10.4 35 5-39 33-68 (519)
465 PRK00411 cdc6 cell division co 97.5 0.0022 4.8E-08 50.2 10.6 34 6-39 45-78 (394)
466 smart00382 AAA ATPases associa 97.4 0.00012 2.7E-09 48.0 3.1 27 17-43 3-29 (148)
467 TIGR00235 udk uridine kinase. 97.4 0.00012 2.7E-09 52.1 3.2 27 13-39 3-29 (207)
468 COG3840 ThiQ ABC-type thiamine 97.4 0.00012 2.6E-09 50.6 2.8 24 18-41 27-50 (231)
469 KOG3347 Predicted nucleotide k 97.4 9.7E-05 2.1E-09 49.2 2.3 26 13-38 4-29 (176)
470 PRK10078 ribose 1,5-bisphospho 97.4 0.00014 3E-09 51.0 3.1 23 18-40 4-26 (186)
471 PRK05480 uridine/cytidine kina 97.4 0.00013 2.9E-09 52.0 3.1 26 14-39 4-29 (209)
472 PRK14530 adenylate kinase; Pro 97.4 0.00013 2.9E-09 52.3 3.0 22 17-38 4-25 (215)
473 PF13238 AAA_18: AAA domain; P 97.4 0.00014 3E-09 47.4 2.9 21 19-39 1-21 (129)
474 PF04665 Pox_A32: Poxvirus A32 97.4 0.00015 3.2E-09 52.7 3.2 27 13-39 10-36 (241)
475 PRK01889 GTPase RsgA; Reviewed 97.4 0.00013 2.8E-09 56.3 3.1 25 17-41 196-220 (356)
476 COG3842 PotA ABC-type spermidi 97.4 0.00013 2.7E-09 55.8 2.9 23 19-41 34-56 (352)
477 PRK03839 putative kinase; Prov 97.4 0.00014 3.1E-09 50.6 3.0 22 18-39 2-23 (180)
478 PRK06217 hypothetical protein; 97.4 0.00015 3.4E-09 50.6 3.0 23 17-39 2-24 (183)
479 cd00071 GMPK Guanosine monopho 97.4 0.00015 3.2E-09 48.3 2.8 21 19-39 2-22 (137)
480 PRK08233 hypothetical protein; 97.4 0.00018 3.8E-09 50.0 3.3 24 16-39 3-26 (182)
481 PLN03025 replication factor C 97.4 0.006 1.3E-07 46.5 11.8 34 6-39 24-57 (319)
482 PRK14738 gmk guanylate kinase; 97.4 0.00024 5.1E-09 50.7 3.9 27 13-39 10-36 (206)
483 cd03111 CpaE_like This protein 97.4 0.0014 3E-08 41.6 7.1 62 61-126 44-106 (106)
484 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.4 0.00018 3.8E-09 51.7 3.2 24 18-41 32-55 (218)
485 PRK06547 hypothetical protein; 97.4 0.00037 7.9E-09 48.2 4.6 27 13-39 12-38 (172)
486 TIGR02322 phosphon_PhnN phosph 97.4 0.00015 3.1E-09 50.5 2.6 22 18-39 3-24 (179)
487 COG1161 Predicted GTPases [Gen 97.4 0.00029 6.3E-09 53.7 4.4 93 66-170 16-109 (322)
488 PRK11174 cysteine/glutathione 97.3 0.0015 3.4E-08 53.8 8.8 24 17-40 377-400 (588)
489 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00019 4.1E-09 45.4 2.7 21 17-37 16-36 (107)
490 TIGR03263 guanyl_kin guanylate 97.3 0.00018 4E-09 50.0 2.9 23 18-40 3-25 (180)
491 KOG4181 Uncharacterized conser 97.3 0.005 1.1E-07 46.8 10.5 29 13-41 184-213 (491)
492 cd03225 ABC_cobalt_CbiO_domain 97.3 0.0002 4.3E-09 51.1 3.2 24 18-41 29-52 (211)
493 TIGR01360 aden_kin_iso1 adenyl 97.3 0.00017 3.8E-09 50.3 2.8 21 17-37 4-24 (188)
494 TIGR00960 3a0501s02 Type II (G 97.3 0.0002 4.4E-09 51.3 3.2 24 18-41 31-54 (216)
495 cd02023 UMPK Uridine monophosp 97.3 0.00015 3.3E-09 51.2 2.5 21 19-39 2-22 (198)
496 cd03261 ABC_Org_Solvent_Resist 97.3 0.00021 4.5E-09 52.0 3.2 24 18-41 28-51 (235)
497 COG1117 PstB ABC-type phosphat 97.3 0.00018 3.9E-09 50.9 2.7 20 19-38 36-55 (253)
498 cd03226 ABC_cobalt_CbiO_domain 97.3 0.00028 6E-09 50.2 3.7 24 18-41 28-51 (205)
499 TIGR01166 cbiO cobalt transpor 97.3 0.00022 4.8E-09 50.1 3.2 24 18-41 20-43 (190)
500 PF07728 AAA_5: AAA domain (dy 97.3 0.0002 4.4E-09 47.6 2.8 22 18-39 1-22 (139)
No 1
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=100.00 E-value=6.3e-37 Score=200.85 Aligned_cols=184 Identities=67% Similarity=1.133 Sum_probs=174.6
Q ss_pred CChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920 1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY 80 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 80 (185)
||+.++++.++.+++.++|.++|..|+||||++++|.+.......||.++..+...+.++++++||.+|+..++..|..|
T Consensus 1 mg~lsilrk~k~kerE~riLiLGLdNsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nY 80 (185)
T KOG0073|consen 1 MGLLSILRKQKLKEREVRILILGLDNSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNY 80 (185)
T ss_pred CcHHHHHHHHHhhhheeEEEEEecCCCCchhHHHHhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++|+|+|.+|+.++++....++..+......+.|+++++||.|+..+...+++...+..+.+.+.++++++.||+
T Consensus 81 festdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~ 160 (185)
T KOG0073|consen 81 FESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSA 160 (185)
T ss_pred hhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEec
Confidence 99999999999999999999999999999887777789999999999999999999999999988887779999999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcccC
Q 029920 161 YTGEGLLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~ 184 (185)
.+|.++.+-++|+++.+.++...+
T Consensus 161 ~tge~l~~gidWL~~~l~~r~~~~ 184 (185)
T KOG0073|consen 161 VTGEDLLEGIDWLCDDLMSRLFTL 184 (185)
T ss_pred cccccHHHHHHHHHHHHHHHhccc
Confidence 999999999999999988766544
No 2
>PLN00223 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=2.6e-35 Score=205.76 Aligned_cols=179 Identities=46% Similarity=0.822 Sum_probs=148.9
Q ss_pred CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920 1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
||.. +......-.++.+||+++|++|||||||++++..+.+..+.||.+.....+..++..+.+||+||++.++.++..
T Consensus 1 m~~~~~~~~~~~~~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~ 80 (181)
T PLN00223 1 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 80 (181)
T ss_pred CchHHHHHHHHhcCCCccEEEEECCCCCCHHHHHHHHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 7743 333333335667999999999999999999998877777778888877778888899999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+++++|++|+|+|+++++++..+..++..++......+.|+++++||+|+.......++...++...... ..+.++++|
T Consensus 81 ~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~-~~~~~~~~S 159 (181)
T PLN00223 81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQ-RHWYIQSTC 159 (181)
T ss_pred HhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCC-CceEEEecc
Confidence 9999999999999999999999988888887654456799999999999987777777777666433322 456788999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|+|++++|++|.+.+.++
T Consensus 160 a~~g~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 160 ATSGEGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999987654
No 3
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=100.00 E-value=7.2e-35 Score=203.73 Aligned_cols=180 Identities=46% Similarity=0.842 Sum_probs=148.6
Q ss_pred CCh-HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920 1 MGL-LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 1 ~~~-~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
||. .+++.+....+..+||+++|++|||||||++++..+.+..+.+|.+.....+...+..+.+|||||++.+...+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~ 80 (182)
T PTZ00133 1 MGLWLSSAFKSLFGKKEVRILMVGLDAAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRH 80 (182)
T ss_pred CchHHHHHHHHhcCCCccEEEEEcCCCCCHHHHHHHHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 773 4455554445667999999999999999999998777766778888777777788899999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+++.+|++|+|+|+++++++.....++..++......+.|+++|+||.|+.+.....++...++...... ..++++++|
T Consensus 81 ~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~-~~~~~~~~S 159 (182)
T PTZ00133 81 YYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQ-RNWYIQGCC 159 (182)
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccC-CcEEEEeee
Confidence 9999999999999999999999888888877654445789999999999976656666666666543333 456788999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhc
Q 029920 160 AYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (185)
|++|.|++++|++|.+.+.+++
T Consensus 160 a~tg~gv~e~~~~l~~~i~~~~ 181 (182)
T PTZ00133 160 ATTAQGLYEGLDWLSANIKKSM 181 (182)
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999887764
No 4
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=100.00 E-value=2.4e-34 Score=198.76 Aligned_cols=161 Identities=45% Similarity=0.858 Sum_probs=137.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
.+.++|+++|++|+|||||++++..+.+..+.+|.+.....+....+.+.+|||||++.+...+..+++.+|++++|||+
T Consensus 7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~ 86 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDS 86 (168)
T ss_pred CCccEEEEECcCCCCHHHHHHHHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeC
Confidence 45799999999999999999999887777777888877777777889999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++.++.+...++..++......+.|+++|+||+|+.+....+++.+.++...... ..++++++||++|.|++++|++|
T Consensus 87 t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SAk~g~gv~~~~~~l 165 (168)
T cd04149 87 ADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTWL 165 (168)
T ss_pred CchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCC-CcEEEEEeeCCCCCChHHHHHHH
Confidence 99999999999888887764445789999999999976666667777665443333 45689999999999999999998
Q ss_pred HH
Q 029920 174 VQ 175 (185)
Q Consensus 174 ~~ 175 (185)
.+
T Consensus 166 ~~ 167 (168)
T cd04149 166 SS 167 (168)
T ss_pred hc
Confidence 65
No 5
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=100.00 E-value=2.7e-34 Score=199.46 Aligned_cols=171 Identities=67% Similarity=1.135 Sum_probs=145.4
Q ss_pred HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920 4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ 83 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 83 (185)
.+.++....+...++|+++|++|+|||||++++.+..+..+.+|.++....+..++..+.+|||||++.+...+..+++.
T Consensus 2 ~~~~~~~~~~~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ 81 (173)
T cd04154 2 LTIIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFES 81 (173)
T ss_pred chhhhhhhcCCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCC
Confidence 35667777778889999999999999999999999887778888887777788888999999999999999899999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
+|++++|+|++++.++.....++..++......+.|+++|+||+|+......+++...+....... ..++++++||++|
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~g 160 (173)
T cd04154 82 TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISS-HHWRIQPCSAVTG 160 (173)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCC-CceEEEeccCCCC
Confidence 999999999999999999888888887654556899999999999977656666666555432222 5778999999999
Q ss_pred CCHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQ 175 (185)
Q Consensus 164 ~~i~~l~~~l~~ 175 (185)
.|++++|+++.+
T Consensus 161 ~gi~~l~~~l~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 6
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-35 Score=198.90 Aligned_cols=164 Identities=21% Similarity=0.360 Sum_probs=136.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
-...+||+++|+.|+|||+|+.++++..++ .+..|+++ ..+.+.+++ ..+++|||+|+++|+.+...|++++|++
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGi 85 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 85 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeE
Confidence 466899999999999999999999999996 56778884 444555554 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCcccccCccceE-EEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMDKTRHWK-IVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 165 (185)
|+|||+++.+||.++..|+.++-++ ...++|.++|+||+|+.+..... +..+.+ +...+++ ++++||+++.|
T Consensus 86 i~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~f-----a~~~~~~~f~ETSAK~~~N 159 (205)
T KOG0084|consen 86 IFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEF-----ADELGIPIFLETSAKDSTN 159 (205)
T ss_pred EEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHH-----HHhcCCcceeecccCCccC
Confidence 9999999999999999999998776 45678999999999986653221 122222 2226667 99999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 029920 166 LLEGFDWLVQDIASRIY 182 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~~ 182 (185)
+++.|..|...+.++..
T Consensus 160 Ve~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 160 VEDAFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999887654
No 7
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=100.00 E-value=6.9e-34 Score=197.72 Aligned_cols=164 Identities=46% Similarity=0.864 Sum_probs=139.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
+..+||+++|++|||||||++++..+.+..+.||.+.....+..+...+.+||+||++.+...+..+++++|++++|+|+
T Consensus 11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~ 90 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDS 90 (175)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEEC
Confidence 45699999999999999999999877676677888877777777889999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++++++....++..++......+.|+++|+||+|+.+....+++...++...... ..+.++++||++|.|++++|++|
T Consensus 91 t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~g~gv~e~~~~l 169 (175)
T smart00177 91 NDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRD-RNWYIQPTCATSGDGLYEGLTWL 169 (175)
T ss_pred CCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCC-CcEEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999998887654445789999999999977666667776665443333 45678899999999999999999
Q ss_pred HHHHh
Q 029920 174 VQDIA 178 (185)
Q Consensus 174 ~~~~~ 178 (185)
.+.+.
T Consensus 170 ~~~~~ 174 (175)
T smart00177 170 SNNLK 174 (175)
T ss_pred HHHhc
Confidence 87653
No 8
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=100.00 E-value=9.3e-34 Score=196.85 Aligned_cols=174 Identities=46% Similarity=0.890 Sum_probs=161.0
Q ss_pred HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920 4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ 83 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 83 (185)
++.+++.....+..+|+++|+.||||||+++++..+......||.++....+.+++..+.+||.+|+..++..|..|++.
T Consensus 2 ~~~~~~~~~~~~~~~ililGl~~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~~ 81 (175)
T PF00025_consen 2 SSVLSKLKSKKKEIKILILGLDGSGKTTLLNRLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQN 81 (175)
T ss_dssp HHHHHHCTTTTSEEEEEEEESTTSSHHHHHHHHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHTT
T ss_pred HHHHHHhcccCcEEEEEEECCCccchHHHHHHhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeeccc
Confidence 46778888779999999999999999999999999888889999999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
+|++|||+|.++++.+.+....+..++......+.|+++++||.|+.+.....++...+....+.....+.++.|||.+|
T Consensus 82 ~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g 161 (175)
T PF00025_consen 82 ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTG 161 (175)
T ss_dssp ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTT
T ss_pred cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCC
Confidence 99999999999999999999999999988777789999999999999888889999888877776447889999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQDI 177 (185)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (185)
.|+.+.++||.+.+
T Consensus 162 ~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 162 EGVDEGLEWLIEQI 175 (175)
T ss_dssp BTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcC
Confidence 99999999998864
No 9
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=100.00 E-value=1.5e-33 Score=193.12 Aligned_cols=158 Identities=46% Similarity=0.880 Sum_probs=133.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
+||+++|++|||||||++++..+.+..+.||.++....+......+.+||+||++.+...+..+++++|++++|+|++++
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999777776677888877777778889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.++.....++..++......+.|+++++||+|+.......++...+....... ..+.++++||++|.|++++|++|.+
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sak~g~gv~~~~~~l~~ 158 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRN-RNWYIQATCATSGDGLYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCC-CCEEEEEeeCCCCCCHHHHHHHHhc
Confidence 99999998888887654445689999999999976545556555554333322 5677899999999999999999864
No 10
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=100.00 E-value=2.9e-33 Score=193.60 Aligned_cols=165 Identities=42% Similarity=0.797 Sum_probs=138.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
||+++|++|||||||++++.+..+..+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|+++++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~ 80 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRD 80 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHH
Confidence 68999999999999999999987777778888777777888899999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
++.....++..++......+.|+++++||+|+.+....+++.+.+..........+.++++||++|.|++++|++|.+.+
T Consensus 81 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 81 RVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred HHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 99999999999887654556899999999999766566666555432222112356789999999999999999999887
Q ss_pred hhhcc
Q 029920 178 ASRIY 182 (185)
Q Consensus 178 ~~~~~ 182 (185)
.+.-+
T Consensus 161 ~~~~~ 165 (169)
T cd04158 161 VAAGV 165 (169)
T ss_pred hhccc
Confidence 76543
No 11
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-33 Score=190.53 Aligned_cols=163 Identities=23% Similarity=0.376 Sum_probs=136.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+|++++|+.++|||||+.++..++|.. ..+|++ +....+..++ ++|.+|||+|++++..+.+-|++++++.
T Consensus 2 ~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 2 ATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred CcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 3567999999999999999999999999976 478888 3344455555 8899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
|+|||+++.+||..+..|+.++.+... +++-+.+|+||+|+.+ ....++....- ...+..||++||++|.|
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~-~~~vialvGNK~DL~~~R~V~~~ea~~yA------e~~gll~~ETSAKTg~N 154 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQAS-PNIVIALVGNKADLLERREVEFEEAQAYA------ESQGLLFFETSAKTGEN 154 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCC-CCeEEEEecchhhhhhcccccHHHHHHHH------HhcCCEEEEEecccccC
Confidence 999999999999999999999877644 7888889999999976 33333333222 22677899999999999
Q ss_pred HHHHHHHHHHHHhhhcc
Q 029920 166 LLEGFDWLVQDIASRIY 182 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~~ 182 (185)
++++|..|.+.+.+..+
T Consensus 155 v~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 155 VNEIFQAIAEKLPCSDP 171 (200)
T ss_pred HHHHHHHHHHhccCccc
Confidence 99999999999876543
No 12
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=100.00 E-value=2.2e-32 Score=190.04 Aligned_cols=162 Identities=44% Similarity=0.820 Sum_probs=137.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
....++|+++|++|+|||||++++.++.+....+|.+.....+.+++..+.+||+||++.+...+..+++.+|++++|+|
T Consensus 12 ~~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D 91 (174)
T cd04153 12 PRKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVID 91 (174)
T ss_pred CCCccEEEEECCCCCCHHHHHHHHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEE
Confidence 34578999999999999999999998888777888887777788888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
+++++++.....++..++......+.|+++++||+|+......+++.+.+....... ..++++++||++|.|+++++++
T Consensus 92 ~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~-~~~~~~~~SA~~g~gi~e~~~~ 170 (174)
T cd04153 92 STDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRD-HTWHIQGCCALTGEGLPEGLDW 170 (174)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEecccCCCCCHHHHHHH
Confidence 999989988888888887664455799999999999976656666666665433332 5678999999999999999999
Q ss_pred HHH
Q 029920 173 LVQ 175 (185)
Q Consensus 173 l~~ 175 (185)
|.+
T Consensus 171 l~~ 173 (174)
T cd04153 171 IAS 173 (174)
T ss_pred Hhc
Confidence 865
No 13
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=100.00 E-value=1.6e-32 Score=192.09 Aligned_cols=170 Identities=37% Similarity=0.684 Sum_probs=136.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE-----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~-----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+.++|+++|++|||||||++++....+....+|.++....... ....+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 4689999999999999999999988776556776644443333 35789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+|++++.++.....++..+.......+.|+++++||+|+.......++..............++++++||++|.|++++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l 161 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG 161 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence 99999998898888888877765555579999999999987654555555444432222223467899999999999999
Q ss_pred HHHHHHHHhhhcccC
Q 029920 170 FDWLVQDIASRIYLL 184 (185)
Q Consensus 170 ~~~l~~~~~~~~~~~ 184 (185)
+++|.+.+.+.++++
T Consensus 162 ~~~l~~~l~~~~~~~ 176 (183)
T cd04152 162 LEKLYEMILKRRKML 176 (183)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998776654
No 14
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-32 Score=194.95 Aligned_cols=160 Identities=24% Similarity=0.371 Sum_probs=125.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+.|+++|+.|+|||||++++..+.+. .+.+|.+ +....+.+++ +.+++|||+|++.+..++..+++++|++++||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47899999999999999999988885 4556665 3344566655 78899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
|++++++|+.+..|+..+... ...+.|+++|+||+|+...... .+....+. ....+++++++||++|.|++++|
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a----~~~~~~~~~etSAktg~gV~e~F 155 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFA----QQITGMRFCEASAKDNFNVDEIF 155 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHH----HhcCCCEEEEecCCCCCCHHHHH
Confidence 999999999998887765433 3457999999999998643221 11111111 11135679999999999999999
Q ss_pred HHHHHHHhhhc
Q 029920 171 DWLVQDIASRI 181 (185)
Q Consensus 171 ~~l~~~~~~~~ 181 (185)
+++++.+.+..
T Consensus 156 ~~l~~~~~~~~ 166 (202)
T cd04120 156 LKLVDDILKKM 166 (202)
T ss_pred HHHHHHHHHhC
Confidence 99999886653
No 15
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=100.00 E-value=4.8e-32 Score=185.52 Aligned_cols=157 Identities=50% Similarity=0.915 Sum_probs=129.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
||+++|++|+|||||++++....+....+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+|++++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~ 80 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRD 80 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 68999999999999999998877766677877777777778899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
++.....++...+......+.|+++++||+|+.+.....++...+....... ...+++++||++|.|+++++++|++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 81 RLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKD-RTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCC-CcEEEEEeeccCCCCHHHHHHHHhc
Confidence 8887777777666544445799999999999976655566655554332222 4568999999999999999999875
No 16
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-32 Score=185.77 Aligned_cols=164 Identities=18% Similarity=0.308 Sum_probs=136.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.-+.+|++++|+.++||||||++++...+. .+.+|+|. ..+.+.+. .+.+++|||+||++|+.+...|++++.++
T Consensus 19 ~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 19 PLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred cceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 445589999999999999999999998885 78888884 44455554 47899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|||+++..||+...+|+.+....+...+.-+++|+||.||.+..+. ....+...+++ .+.-|+++||+.|.|+.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv---s~eEg~~kAke-l~a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV---SIEEGERKAKE-LNAEFIETSAKAGENVK 174 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhh---hHHHHHHHHHH-hCcEEEEecccCCCCHH
Confidence 999999999999999999999999877667888999999999876333 22222223333 56679999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
++|..|...+.+.
T Consensus 175 ~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 175 QLFRRIAAALPGM 187 (221)
T ss_pred HHHHHHHHhccCc
Confidence 9999988876543
No 17
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=100.00 E-value=8.9e-32 Score=184.44 Aligned_cols=158 Identities=44% Similarity=0.825 Sum_probs=132.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
+|+++|++|||||||++++.+..+....+|.++....+... ...+.+||+||++.+...+..++..+|++++|+|++++
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~ 80 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDE 80 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcH
Confidence 58999999999999999999998877778887766666553 47899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.++.....++..++......+.|+++|+||+|+......+++...+..........++++++||++|.|++++|++|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 81 ARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred HHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence 8999988888888776544689999999999997665666666665543444335678999999999999999999864
No 18
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=100.00 E-value=1.1e-31 Score=185.27 Aligned_cols=158 Identities=41% Similarity=0.719 Sum_probs=137.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
+|+++|++|||||||++++.+.....+.+|.+.....+..++..+++||+||++.++.++..+++.+|++++|+|++++.
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~ 80 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDD 80 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchh
Confidence 48999999999999999999885567788888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC--ccceEEEeecccCC------CCHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK--TRHWKIVGCSAYTG------EGLLEG 169 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~------~~i~~l 169 (185)
++..+..++..+.......++|+++|+||+|+.......++...+....+.. ...+++++|||++| .|+++.
T Consensus 81 s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~ 160 (167)
T cd04161 81 RVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEG 160 (167)
T ss_pred HHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHH
Confidence 9999999999887765556799999999999988777777777776555432 23578899999998 899999
Q ss_pred HHHHHH
Q 029920 170 FDWLVQ 175 (185)
Q Consensus 170 ~~~l~~ 175 (185)
|+||..
T Consensus 161 ~~wl~~ 166 (167)
T cd04161 161 LRWLLA 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 19
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=100.00 E-value=9.2e-32 Score=184.62 Aligned_cols=157 Identities=40% Similarity=0.717 Sum_probs=129.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC--cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT--SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
+|+++|++|||||||++++.+... ..+.+|.++....+...+..+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCc
Confidence 589999999999999999998743 466788887777777788999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 96 LRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 96 ~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+.++.....++..++.... ..+.|+++|+||+|+.+.....++...+....... ..++++++||++|.|+++++++|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~-~~~~~~~~Sa~~g~gv~~~~~~l 159 (162)
T cd04157 81 RLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKD-KPWHIFASNALTGEGLDEGVQWL 159 (162)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccC-ceEEEEEeeCCCCCchHHHHHHH
Confidence 9999888888887765432 24799999999999976655555555554332221 35679999999999999999998
Q ss_pred HH
Q 029920 174 VQ 175 (185)
Q Consensus 174 ~~ 175 (185)
.+
T Consensus 160 ~~ 161 (162)
T cd04157 160 QA 161 (162)
T ss_pred hc
Confidence 64
No 20
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.7e-31 Score=187.21 Aligned_cols=160 Identities=17% Similarity=0.307 Sum_probs=128.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...+||+++|+.|+|||||++++..+.+. .+.++.+.. ...+..++ +.+.+|||+|++.+..++..+++.+|+++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999988774 444555543 33455555 78899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|||++++.+|+.+..|+..+.... ++.|+++|+||+|+... ...++..... ...+++++++||++|.|+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a------~~~~~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYA------ERNGMTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHH------HHcCCEEEEecCCCCCCH
Confidence 9999999999999999988886543 57999999999998643 2222222211 125678999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
+++|+++++.+..+.
T Consensus 156 ~~~F~~l~~~i~~~~ 170 (189)
T cd04121 156 TESFTELARIVLMRH 170 (189)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999876543
No 21
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=100.00 E-value=2.6e-31 Score=184.36 Aligned_cols=170 Identities=54% Similarity=0.955 Sum_probs=144.6
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
+.++...+..+.++|+++|++|||||||++++.+..+..+.++.++....+..++..+.+||+||+..+...+..+++.+
T Consensus 3 ~~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~~~ 82 (173)
T cd04155 3 SLLRKLRKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFENT 82 (173)
T ss_pred hHHHHhhccCCccEEEEEccCCCCHHHHHHHHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhcCC
Confidence 45667777788999999999999999999999998887778888888888888889999999999998888888899999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
|++++|+|+++..++.....++..++......++|+++++||+|+.+.....++...++...... ..++++++||++|.
T Consensus 83 ~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~Sa~~~~ 161 (173)
T cd04155 83 DCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRD-RTWHIQACSAKTGE 161 (173)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCC-CeEEEEEeECCCCC
Confidence 99999999999888888888888877665555799999999999977666666766665443333 45678999999999
Q ss_pred CHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQ 175 (185)
Q Consensus 165 ~i~~l~~~l~~ 175 (185)
|++++++||++
T Consensus 162 gi~~~~~~l~~ 172 (173)
T cd04155 162 GLQEGMNWVCK 172 (173)
T ss_pred CHHHHHHHHhc
Confidence 99999999875
No 22
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.2e-31 Score=186.56 Aligned_cols=164 Identities=33% Similarity=0.567 Sum_probs=140.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
..+.++|+++|++|||||||++++.+..+..+.+|.+.....+..++..+.+||+||+..+...+..+++.+|++++|+|
T Consensus 14 ~~~~~~i~ivG~~~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD 93 (184)
T smart00178 14 WNKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVD 93 (184)
T ss_pred ccccCEEEEECCCCCCHHHHHHHHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEE
Confidence 36679999999999999999999999887777777777777778888999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc------CccceEEEeecccCCCCH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD------KTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i 166 (185)
++++.++.....++..++......+.|+++++||+|+......+++...++..... ..+.+.+++|||+++.|+
T Consensus 94 ~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~ 173 (184)
T smart00178 94 AYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGY 173 (184)
T ss_pred CCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCCh
Confidence 99999999888888887765445679999999999998777778888777654322 124667999999999999
Q ss_pred HHHHHHHHHH
Q 029920 167 LEGFDWLVQD 176 (185)
Q Consensus 167 ~~l~~~l~~~ 176 (185)
+++++||.+.
T Consensus 174 ~~~~~wl~~~ 183 (184)
T smart00178 174 GEGFKWLSQY 183 (184)
T ss_pred HHHHHHHHhh
Confidence 9999999764
No 23
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.9e-32 Score=186.92 Aligned_cols=165 Identities=22% Similarity=0.389 Sum_probs=135.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.....+||+++|++|||||+++.++..+.+. ....|++ +..+.+..++ +.+++|||+|+++++.+...|++++++
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g 87 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG 87 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence 3567899999999999999999999999885 4556777 4455566655 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+++|||+++..||+++..|+..+-++ ...+.|.++|+||+|+... +.+....++..+ ...+++|+++||++|.||
T Consensus 88 i~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~---R~V~~e~ge~lA-~e~G~~F~EtSAk~~~NI 162 (207)
T KOG0078|consen 88 ILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEK---RQVSKERGEALA-REYGIKFFETSAKTNFNI 162 (207)
T ss_pred eEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeecccccccc---ccccHHHHHHHH-HHhCCeEEEccccCCCCH
Confidence 99999999999999999977776554 5568999999999999663 222222222222 227899999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
++.|..|+..+.++.
T Consensus 163 ~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 163 EEAFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999887654
No 24
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=100.00 E-value=3.1e-31 Score=186.69 Aligned_cols=167 Identities=35% Similarity=0.621 Sum_probs=140.1
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+....+.++|+++|++|||||||++++.+..+..+.+|.+.....+.+++..+.+||+||++.+...+..+++.+|++++
T Consensus 13 ~~~~~~~~ki~ilG~~~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 13 LGLYNKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred hhcccCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 33355689999999999999999999999888777778877777788888999999999999988888999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc----------cCccceEEEeec
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM----------DKTRHWKIVGCS 159 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~S 159 (185)
|+|+++++++.....++..++......+.|+++++||+|+.......++...+..... .....+++++||
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS 172 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence 9999999899888888888877655567999999999999776667777666653221 111346799999
Q ss_pred ccCCCCHHHHHHHHHHH
Q 029920 160 AYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~ 176 (185)
|++|.|++++|++|.+.
T Consensus 173 a~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 173 VVKRQGYGEAFRWLSQY 189 (190)
T ss_pred ecCCCChHHHHHHHHhh
Confidence 99999999999999875
No 25
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.7e-32 Score=187.19 Aligned_cols=160 Identities=18% Similarity=0.265 Sum_probs=126.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.+||+++|.+|+|||||++++.+..+. .+.+|.+... ..+..++ +.+.+|||||++.+..++..++..+|++++||
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~ 81 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICY 81 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEE
Confidence 479999999999999999999988885 5566766333 2344544 67999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++.+|+.+..|+..+......++.|+++|+||+|+.+.. ..++... + . ...++++++|||++|.|++++
T Consensus 82 d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~-~----a-~~~~~~~~e~Sa~~~~~v~~~ 155 (172)
T cd04141 82 SVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRN-L----A-REFNCPFFETSAALRHYIDDA 155 (172)
T ss_pred ECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHH-H----H-HHhCCEEEEEecCCCCCHHHH
Confidence 999999999998876655544334579999999999986432 2222211 1 1 125678999999999999999
Q ss_pred HHHHHHHHhhhc
Q 029920 170 FDWLVQDIASRI 181 (185)
Q Consensus 170 ~~~l~~~~~~~~ 181 (185)
|+++++.+.+..
T Consensus 156 f~~l~~~~~~~~ 167 (172)
T cd04141 156 FHGLVREIRRKE 167 (172)
T ss_pred HHHHHHHHHHhc
Confidence 999998877654
No 26
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-32 Score=181.47 Aligned_cols=179 Identities=47% Similarity=0.844 Sum_probs=166.0
Q ss_pred CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920 1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
||+. +.+..........+|+++|.-++||||++++|..+.+-...||+++....+++.+..|.+||..|+++++..|..
T Consensus 1 MG~~~s~~~~~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 1 MGLIFSKLFSGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred CcchhhhhhhhccCcceEEEEEEeccCCCceeeeEeeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 6776 444555668889999999999999999999999988888899999999999999999999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
|+.+.+++|||+|.+|++.+.++...+..++......+.|+++.+||.|+..+-+..++...+....+.. ..+.+..|+
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~-~~w~iq~~~ 159 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRS-RNWHIQSTC 159 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCC-CCcEEeecc
Confidence 9999999999999999999999999999999987778899999999999999999999999999888887 899999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|.+|.|+.|.++|+.+.+..+
T Consensus 160 a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 160 AISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccccHHHHHHHHHHHHhcc
Confidence 999999999999999988653
No 27
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.3e-32 Score=182.41 Aligned_cols=164 Identities=22% Similarity=0.348 Sum_probs=135.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+|++++|+.|+|||+|+.+++.+.|. ....|+++. .+.+.++ ..++++|||+|++.|++....|++.+.++
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Ga 82 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGA 82 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcce
Confidence 456799999999999999999999999995 445666644 3344444 47899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|||++.+++|..+.+|+.+..++ ..+|..+++++||+|+.... +++...+.+.+.. ++..++++||+++.|++
T Consensus 83 lLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR---~Vs~EEGeaFA~e-hgLifmETSakt~~~VE 157 (216)
T KOG0098|consen 83 LLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARR---EVSKEEGEAFARE-HGLIFMETSAKTAENVE 157 (216)
T ss_pred EEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccc---cccHHHHHHHHHH-cCceeehhhhhhhhhHH
Confidence 9999999999999999999999777 35689999999999996542 3333333333333 88899999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029920 168 EGFDWLVQDIASRI 181 (185)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (185)
|.|..+...+.+..
T Consensus 158 EaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 158 EAFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876543
No 28
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=100.00 E-value=4e-31 Score=180.89 Aligned_cols=157 Identities=51% Similarity=0.933 Sum_probs=136.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
||+++|++|||||||++++.+.......++.+.....+.++...+.+||+||++.+...+..++..+|++++|+|+++++
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~ 80 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRE 80 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHH
Confidence 68999999999999999999998877888888888888888999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
++.....++..+.......+.|+++++||+|+.......+....+....... ..++++++||++|.|++++|++|..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 81 RIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILG-RRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccC-CcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 9999999888887765556899999999999987666666666655432222 5678999999999999999999875
No 29
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=3.3e-31 Score=189.43 Aligned_cols=162 Identities=18% Similarity=0.285 Sum_probs=128.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
+||+++|.+|+|||||++++..+.+....+|.+.......+..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~ 80 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNV 80 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999999987777787766555566678899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC---------------------CCHHHHHHhcCc--------ccc
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGA---------------------LTPTEIAKVLNL--------EAM 147 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~---------------------~~~~~~~~~~~~--------~~~ 147 (185)
++|+.+..|+..+... ...+.|+++|+||+|+.+. ...++....... +.+
T Consensus 81 ~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~ 159 (220)
T cd04126 81 QSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDL 159 (220)
T ss_pred HHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccccccc
Confidence 9999999988887654 3457899999999998651 111111111000 001
Q ss_pred cCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
......+|++|||++|.|++++|..+++.+.+
T Consensus 160 ~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 160 SPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 11123689999999999999999999988764
No 30
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=4.5e-32 Score=181.42 Aligned_cols=164 Identities=21% Similarity=0.333 Sum_probs=133.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.+...+||+++|++|+|||+|+|++..+++. .+..|++ +..+.+.+++ +.+++|||+|+++|.++...+++++|.
T Consensus 5 ~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 5 RKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred CcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCce
Confidence 4677899999999999999999999999986 5667777 3444444444 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEeecCCCCCC---CCHHHHHHhcCcccccCccceEEEeecc
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDINGA---LTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+++|||+++++||+.+..|-.+++.+... ...|+|+++||+|+... .......+.+ .....++|+|++||
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~W----C~s~gnipyfEtSA 160 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTW----CKSKGNIPYFETSA 160 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHH----HHhcCCceeEEecc
Confidence 99999999999999999999999887532 34799999999998653 2222222222 12226899999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++..|+++.|+.+.+.+..
T Consensus 161 K~~~NV~~AFe~ia~~aL~ 179 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALA 179 (210)
T ss_pred cccccHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 31
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.1e-30 Score=182.42 Aligned_cols=160 Identities=18% Similarity=0.346 Sum_probs=126.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE--EEEEc------------CeEEEEEEcCCchhhHHHHHh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK--TVTYQ------------KYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~--~~~~~------------~~~~~~~D~~g~~~~~~~~~~ 79 (185)
..+||+++|++|||||||++++.++.+. .+.+|.+.... .+.+. ...+.+|||||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 4689999999999999999999988775 44566653332 23322 378999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEe
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+++++|++++|||++++++|..+..|+..+......++.|+++|+||+|+.+.. ..++...... ..+.++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALAD------KYGIPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHH------HcCCeEEE
Confidence 999999999999999999999999988887665444578999999999986532 2222222111 13468999
Q ss_pred ecccCCCCHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+||++|.|++++|++|.+.+.++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999987665
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.98 E-value=1.2e-31 Score=188.85 Aligned_cols=163 Identities=17% Similarity=0.261 Sum_probs=123.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
..+||+++|+.|+|||||++++..+.+. .+.+|.+.... .+..+ .+.+.+|||+|++.+..++..+++++|++++|
T Consensus 2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 3589999999999999999999998884 56677764332 23333 37899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHH--------hcCcccccCccceEEEeecc
Q 029920 91 VDSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-EIAK--------VLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 91 ~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~--------~~~~~~~~~~~~~~~~~~Sa 160 (185)
||++++.+|+.+.. |...+... .++.|+++|+||+|+.+..... .... ..+.........++++++||
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999975 54444332 3579999999999996532211 1111 00111111212368999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++|.|++++|+++++.+..
T Consensus 160 k~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9999999999999988754
No 33
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.98 E-value=5.5e-31 Score=181.31 Aligned_cols=156 Identities=35% Similarity=0.636 Sum_probs=132.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
.|+++|++|+|||||++++.+..+ ..+.||.+.....+...+..+.+||+||++.+...+..+++.+|++++|||++++
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~~ 80 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSADS 80 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCH
Confidence 379999999999999999998866 4567888876666777889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC------CCCHHHHH
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT------GEGLLEGF 170 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~l~ 170 (185)
.++.....++..+.... +++|+++|+||+|+.......++...+....+.....++++++||++ ++|++++|
T Consensus 81 ~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~ 158 (164)
T cd04162 81 ERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLL 158 (164)
T ss_pred HHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHH
Confidence 99999888888876542 58999999999999777666666666665555555788899999888 99999999
Q ss_pred HHHHH
Q 029920 171 DWLVQ 175 (185)
Q Consensus 171 ~~l~~ 175 (185)
+.++.
T Consensus 159 ~~~~~ 163 (164)
T cd04162 159 SQLIN 163 (164)
T ss_pred HHHhc
Confidence 88764
No 34
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.98 E-value=5.7e-31 Score=182.69 Aligned_cols=159 Identities=18% Similarity=0.238 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||+|+.++..+.+. .+.+|.+.... .+..++ +.+.+|||+|++.+..++..+++++|++|+|||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd 81 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 81 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEEE
Confidence 68999999999999999999998885 56777764332 344443 789999999999999999999999999999999
Q ss_pred CCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-------HHHHHhcCcccccCccce-EEEeecccCC
Q 029920 93 SSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALTP-------TEIAKVLNLEAMDKTRHW-KIVGCSAYTG 163 (185)
Q Consensus 93 ~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (185)
+++++||+.+ ..|+..+.... ++.|+++|+||+|+.+.... ..+....... ++...+. ++++|||++|
T Consensus 82 ~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 82 LISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEE-LRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred cCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHH-HHHHcCCCEEEECCCCcc
Confidence 9999999998 56777765442 47999999999999553110 0011111111 1112344 6999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 029920 164 EGLLEGFDWLVQDIA 178 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (185)
.|++++|+.+++.+.
T Consensus 159 ~nV~~~F~~~~~~~~ 173 (176)
T cd04133 159 QNVKAVFDAAIKVVL 173 (176)
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999998763
No 35
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=9.2e-31 Score=185.85 Aligned_cols=159 Identities=22% Similarity=0.308 Sum_probs=126.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+||+++|++|+|||||+++|.++.+. .+.+|.+.. ...+..+ .+.+.+|||||++.+..++..+++++|++++|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999988775 456777643 3345544 46899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc---ccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccc-eEEEeecccCCC
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEE---RLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRH-WKIVGCSAYTGE 164 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 164 (185)
||++++++|+.+..|+..+.... ...+.|+++|+||+|+.+ ....++....... .+ .+++++||++|.
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~------~~~~~~~e~Sak~~~ 154 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKE------NGFIGWFETSAKEGI 154 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHH------cCCceEEEEeCCCCC
Confidence 99999999999988877664432 235789999999999963 3333343332221 23 579999999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 029920 165 GLLEGFDWLVQDIASRI 181 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~~ 181 (185)
|++++|++|.+.+.+..
T Consensus 155 ~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 155 NIEEAMRFLVKNILAND 171 (201)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999886643
No 36
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.98 E-value=6.6e-31 Score=181.26 Aligned_cols=155 Identities=18% Similarity=0.327 Sum_probs=124.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++..+.+. .+.+|.+.......+ ..+.+.+|||||++.+...+..++..+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999877654 566777655444332 3478999999999998888888999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
|++++++++.+..|+..+..... +.|+++|+||+|+.......+... + ......+++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~--~~piiiv~nK~Dl~~~~~~~~~~~-~-----~~~~~~~~~e~Sa~~~~~v~~~f~ 152 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG--NIPIVLCGNKVDIKDRKVKAKQIT-F-----HRKKNLQYYEISAKSNYNFEKPFL 152 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC--CCcEEEEEEchhcccccCCHHHHH-H-----HHHcCCEEEEEeCCCCCChHHHHH
Confidence 99999999999888888766543 799999999999864332222111 1 112567899999999999999999
Q ss_pred HHHHHHhh
Q 029920 172 WLVQDIAS 179 (185)
Q Consensus 172 ~l~~~~~~ 179 (185)
+|.+.+.+
T Consensus 153 ~l~~~~~~ 160 (166)
T cd00877 153 WLARKLLG 160 (166)
T ss_pred HHHHHHHh
Confidence 99998865
No 37
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.98 E-value=3.4e-31 Score=184.11 Aligned_cols=159 Identities=21% Similarity=0.264 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++..+.+ ..+.||.+.... .+..++ +.+.+|||+|++.+...+..+++.+|++++|||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d 81 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFS 81 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEE
Confidence 7999999999999999999998888 466777764443 345555 678899999999999888889999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh---------cCcccccCccceEEEeecccC
Q 029920 93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV---------LNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+.....+.... ...........++++++||++
T Consensus 82 ~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~t 159 (175)
T cd01874 82 VVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALT 159 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCC
Confidence 999999999875 55554332 347999999999998543211111100 001111121346899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQDI 177 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (185)
|.|++++|+.++++.
T Consensus 160 g~~v~~~f~~~~~~~ 174 (175)
T cd01874 160 QKGLKNVFDEAILAA 174 (175)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.98 E-value=2.1e-30 Score=178.84 Aligned_cols=158 Identities=40% Similarity=0.725 Sum_probs=129.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-------cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT-------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+|+++|++|||||||++++.+... ..+.+|.+.....+.+++..+.+|||||++.+...+..++..+|++++|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~v 80 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYAECHAIIYV 80 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhCCCCEEEEE
Confidence 589999999999999999976432 2445677777777888899999999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc-cCccceEEEeecccCCCCHHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+|+++++++.....++..++......+.|+++++||+|+.......+....+..... .....++++++||++|.|++++
T Consensus 81 vd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~ 160 (167)
T cd04160 81 IDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREG 160 (167)
T ss_pred EECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHH
Confidence 999998889988888888877655567999999999998776655555555443221 1124578999999999999999
Q ss_pred HHHHHH
Q 029920 170 FDWLVQ 175 (185)
Q Consensus 170 ~~~l~~ 175 (185)
+++|.+
T Consensus 161 ~~~l~~ 166 (167)
T cd04160 161 IEWLVE 166 (167)
T ss_pred HHHHhc
Confidence 999864
No 39
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.98 E-value=9.8e-31 Score=179.31 Aligned_cols=156 Identities=19% Similarity=0.320 Sum_probs=122.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+..++ ..+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 368999999999999999999988764 444555532 23344444 56889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
|++++.+++....|+..+.......+.|+++|+||+|+.+.. ...+...... ..+.+++++||++|.|++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l~ 154 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAK------SYGIPYIETSAKTRQGVEEAF 154 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHH------HhCCeEEEecCCCCCCHHHHH
Confidence 999999999998888888766555679999999999986532 2222222211 145689999999999999999
Q ss_pred HHHHHHH
Q 029920 171 DWLVQDI 177 (185)
Q Consensus 171 ~~l~~~~ 177 (185)
+++++.+
T Consensus 155 ~~l~~~~ 161 (162)
T cd04138 155 YTLVREI 161 (162)
T ss_pred HHHHHHh
Confidence 9998754
No 40
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=3.9e-30 Score=177.39 Aligned_cols=157 Identities=19% Similarity=0.318 Sum_probs=124.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.+||+++|++|+|||||++++.++.+. .+.+|.+... ..+..++ +.+.+|||||++.+...+..+++++|++++|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 479999999999999999999988775 3445555333 3344443 6789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
||++++++|+.+..|+..+... ..++.|+++|+||+|+..... .++..... ...+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFA------DENGLLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCEEEEEECCCCCCHHH
Confidence 9999999999999988876543 335789999999999865432 22322221 11456899999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999987754
No 41
>PTZ00369 Ras-like protein; Provisional
Probab=99.97 E-value=1.2e-30 Score=183.49 Aligned_cols=162 Identities=17% Similarity=0.270 Sum_probs=128.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
...+||+++|++|||||||++++.+..+. .+.+|.+.... .+..+ ...+++|||||++.+..++..+++.+|++++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil 82 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC 82 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence 34699999999999999999999988774 55566654332 33343 3678899999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++++|+.+..|+..+.......+.|+++|+||+|+.... ...+..... ...+++++++||++|.|++
T Consensus 83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~------~~~~~~~~e~Sak~~~gi~ 156 (189)
T PTZ00369 83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELA------KSFGIPFLETSAKQRVNVD 156 (189)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHH------HHhCCEEEEeeCCCCCCHH
Confidence 99999999999999888888766555678999999999985432 222222111 1135689999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029920 168 EGFDWLVQDIASRI 181 (185)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (185)
++|+++++.+.+..
T Consensus 157 ~~~~~l~~~l~~~~ 170 (189)
T PTZ00369 157 EAFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876653
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.4e-30 Score=186.96 Aligned_cols=158 Identities=16% Similarity=0.298 Sum_probs=128.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEE--E--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVT--Y--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...+||+++|++|||||||++++..+.+. .+.+|.+....... . ....+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 67799999999999999999998877774 56788876554433 2 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|||++++++|+.+..|+..+... ..+.|+++|+||+|+..... .+++ .+ .....++++++||++|.|++
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~~~v~~~~~--~~-----~~~~~~~~~e~SAk~~~~i~ 161 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TF-----HRKKNLQYYEISAKSNYNFE 161 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhhccCCHHHH--HH-----HHhcCCEEEEcCCCCCCCHH
Confidence 999999999999999988887654 35799999999999854322 2222 11 11256789999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
++|++|++.+.+.
T Consensus 162 ~~f~~l~~~~~~~ 174 (219)
T PLN03071 162 KPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988654
No 43
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.97 E-value=4.2e-31 Score=184.35 Aligned_cols=162 Identities=20% Similarity=0.255 Sum_probs=123.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
...+||+++|++|+|||||++++..+.+. .+.||.+... ..+..+ .+.+.+|||+|++.+..++..+++++|++++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 45789999999999999999999998875 4667776333 234444 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcccccCccc-eEEEee
Q 029920 90 VVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLEAMDKTRH-WKIVGC 158 (185)
Q Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~~ 158 (185)
|||++++.+|+.+ ..|+..+... .++.|+++|+||+|+.+... ...+....+.. ++...+ .+|++|
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~--~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~-~a~~~~~~~~~E~ 159 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGAN-MAKQIGAATYIEC 159 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHH-HHHHcCCCEEEEC
Confidence 9999999999997 5676666543 35799999999999854210 00111111111 122245 489999
Q ss_pred cccCCCC-HHHHHHHHHHHHh
Q 029920 159 SAYTGEG-LLEGFDWLVQDIA 178 (185)
Q Consensus 159 Sa~~~~~-i~~l~~~l~~~~~ 178 (185)
||++|.| ++++|..+.+.+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
No 44
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=2.7e-30 Score=177.47 Aligned_cols=156 Identities=18% Similarity=0.252 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|||||||++++.++.+. .+.+|.+ .....+..++ ..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYS 81 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEE
Confidence 79999999999999999999987764 3445554 2233455554 567889999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
++++.+++....|+..+.......+.|+++|+||+|+...... .+....+. .. .+.+++++||++|.|++++|+
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~----~~-~~~~~~~~Sa~~~~~v~~l~~ 156 (163)
T cd04136 82 ITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALA----RQ-WGCPFYETSAKSKINVDEVFA 156 (163)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHH----HH-cCCeEEEecCCCCCCHHHHHH
Confidence 9999999999998888876655567999999999998643221 11111111 11 336899999999999999999
Q ss_pred HHHHHH
Q 029920 172 WLVQDI 177 (185)
Q Consensus 172 ~l~~~~ 177 (185)
++.+.+
T Consensus 157 ~l~~~~ 162 (163)
T cd04136 157 DLVRQI 162 (163)
T ss_pred HHHHhc
Confidence 998754
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=7.6e-30 Score=176.14 Aligned_cols=158 Identities=21% Similarity=0.374 Sum_probs=126.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+||+++|++|+|||||++++.+..+. .+.++.+... ..+..++ +.+.+||+||++.+...+..+++++|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 4689999999999999999999988875 4566666433 3444444 678999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++++|..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ....+++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALAD------EYGIKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHH
Confidence 99999999999999888877654 33578999999999997532 2222222211 145689999999999999
Q ss_pred HHHHHHHHHHhh
Q 029920 168 EGFDWLVQDIAS 179 (185)
Q Consensus 168 ~l~~~l~~~~~~ 179 (185)
++|+++.+.+.+
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998754
No 46
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=3.8e-30 Score=177.08 Aligned_cols=157 Identities=18% Similarity=0.248 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.+||+++|.+|||||||++++..+.+. .+.+|.+.. ...+..++ +.+.+|||||++.+..++..+++.+|++++|+
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 369999999999999999999877664 345565532 23444543 56789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++|+.+..|+..+.......+.|+++++||+|+..... ..+.. .+. ...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~~Sa~~~~~v~~~ 154 (164)
T cd04175 81 SITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQ-NLA-----RQWGCAFLETSAKAKINVNEI 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHH-HHH-----HHhCCEEEEeeCCCCCCHHHH
Confidence 9999999999999888887765556899999999999865322 12211 111 113468999999999999999
Q ss_pred HHHHHHHHh
Q 029920 170 FDWLVQDIA 178 (185)
Q Consensus 170 ~~~l~~~~~ 178 (185)
|.++.+.+.
T Consensus 155 ~~~l~~~l~ 163 (164)
T cd04175 155 FYDLVRQIN 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 47
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=5.3e-30 Score=176.65 Aligned_cols=156 Identities=22% Similarity=0.362 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++++..+. .+.++.+... ..+..+ ...+++|||||++.+..++..+++.+|++++|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999998874 4556666433 334443 478899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhcccc----CCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERL----SGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~----~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
|++++.+++....|+..+...... .+.|+++|+||+|+.+. ....+... +.. ..+.+++++||++|.|
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~-----~~~~~~~~~Sa~~~~g 154 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL-WAE-----SKGFKYFETSACTGEG 154 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH-HHH-----HcCCeEEEEECCCCCC
Confidence 999999999998888888765432 46899999999998632 12222222 111 1346799999999999
Q ss_pred HHHHHHHHHHHHh
Q 029920 166 LLEGFDWLVQDIA 178 (185)
Q Consensus 166 i~~l~~~l~~~~~ 178 (185)
+++++++|.+.+.
T Consensus 155 i~~l~~~l~~~l~ 167 (168)
T cd04119 155 VNEMFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 48
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=4.6e-31 Score=172.86 Aligned_cols=164 Identities=23% Similarity=0.400 Sum_probs=136.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccC-cc--eEEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPT-LG--FNIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t-~~--~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+||+++|.+|+|||+|+-++..+.+....++ ++ +..+.+.++ ..++.+|||+|+++|+.+...|++++.++
T Consensus 8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi 87 (209)
T KOG0080|consen 8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI 87 (209)
T ss_pred cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence 34569999999999999999999999999877765 66 445555554 47899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|||++.+++|.++..|+.++-.+...+++-.++|+||+|..+. +.+....+...+. .+.+-|+++||++..|+.
T Consensus 88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~---R~V~reEG~kfAr-~h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESE---RVVDREEGLKFAR-KHRCLFIECSAKTRENVQ 163 (209)
T ss_pred EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhc---ccccHHHHHHHHH-hhCcEEEEcchhhhccHH
Confidence 999999999999999999999888877778889999999996432 2233333333333 378889999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
..|+.++..+.+-
T Consensus 164 ~~FeelveKIi~t 176 (209)
T KOG0080|consen 164 CCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 49
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=4.1e-30 Score=179.61 Aligned_cols=159 Identities=21% Similarity=0.295 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|+.|+|||||++++.++.+. .+.+|.+... ..+..++ +.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999988775 4778887544 4555555 67999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
|++++++|+.+..|+..+.... ....| ++|+||+|+..... .+.... ... .++...+++++++||++|.|+++
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~-~~~-~~a~~~~~~~~e~SAk~g~~v~~ 156 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITK-QAR-KYAKAMKAPLIFCSTSHSINVQK 156 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHH-HHH-HHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999888876542 23466 67899999853211 111111 111 11222457899999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|+++.+.+.+
T Consensus 157 lf~~l~~~l~~ 167 (182)
T cd04128 157 IFKIVLAKAFD 167 (182)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 50
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=1.2e-29 Score=174.76 Aligned_cols=155 Identities=19% Similarity=0.358 Sum_probs=122.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++.+..+. .+.++.+... ..+..+ ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999998875 4566666433 233333 368999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++++.+..|+..+... ...+.|+++|+||+|+.+... .++...... ..+++++++||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLAD------QLGFEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCEEEEEECCCCCCHHHH
Confidence 999999999998888776543 334689999999999865422 222221111 14457999999999999999
Q ss_pred HHHHHHHHh
Q 029920 170 FDWLVQDIA 178 (185)
Q Consensus 170 ~~~l~~~~~ 178 (185)
|+++.+.+.
T Consensus 155 ~~~l~~~~~ 163 (165)
T cd01865 155 FERLVDIIC 163 (165)
T ss_pred HHHHHHHHH
Confidence 999998764
No 51
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.8e-30 Score=177.57 Aligned_cols=160 Identities=19% Similarity=0.249 Sum_probs=120.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
++||+++|++|+|||||++++.++.++ .+.||.+... ..+..++ +.+.+|||+|++.+..+...+++++|++++||
T Consensus 1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 479999999999999999999988875 5566665332 2344443 77999999999999999999999999999999
Q ss_pred eCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---------HHHHHhcCcccccCccce-EEEeecc
Q 029920 92 DSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALTP---------TEIAKVLNLEAMDKTRHW-KIVGCSA 160 (185)
Q Consensus 92 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~-~~~~~Sa 160 (185)
|+++++||+.+ ..|+..+... .++.|+++|+||+|+.+.... ..+....+.. ++...+. ++++|||
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~--~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~-~a~~~~~~~~~E~SA 157 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEF--CPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCA-IAKQLGAEIYLECSA 157 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHH--CCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHH-HHHHhCCCEEEECcc
Confidence 99999999996 5676666543 357999999999998542100 0011111111 1222454 7999999
Q ss_pred cCCCC-HHHHHHHHHHHHh
Q 029920 161 YTGEG-LLEGFDWLVQDIA 178 (185)
Q Consensus 161 ~~~~~-i~~l~~~l~~~~~ 178 (185)
++|.| ++++|..+.....
T Consensus 158 ~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 158 FTSEKSVRDIFHVATMACL 176 (178)
T ss_pred CcCCcCHHHHHHHHHHHHh
Confidence 99995 9999999988543
No 52
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=5.6e-30 Score=176.08 Aligned_cols=156 Identities=17% Similarity=0.251 Sum_probs=122.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.+||+++|++|+|||||++++.+..+. .+.++.+. .......++ ..+.+|||||++++..++..+++.+|++++|+
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 81 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVF 81 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999887663 34444442 222334444 67889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++++....|+..+.......+.|+++++||+|+..... ..+..... ...+.+++++||++|.|++++
T Consensus 82 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~~Sa~~~~~i~~l 155 (164)
T cd04145 82 SVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELA------RKLKIPYIETSAKDRLNVDKA 155 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHH------HHcCCcEEEeeCCCCCCHHHH
Confidence 9999999999999888877654455789999999999865422 12221111 113468999999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
|+++++.+
T Consensus 156 ~~~l~~~~ 163 (164)
T cd04145 156 FHDLVRVI 163 (164)
T ss_pred HHHHHHhh
Confidence 99998765
No 53
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.97 E-value=9.3e-30 Score=174.73 Aligned_cols=155 Identities=15% Similarity=0.273 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++.+..+.. ..++.+... .....+ ...+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999998887743 334444322 223333 467889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
|++++.+++....|+..+... .++.|+++++||+|+.... ..+.. .+ ....+++++++||++|.|++++|+
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~~-~~~~~-~~-----~~~~~~~~~~~Sa~~~~gv~~l~~ 151 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPSV-TQKKF-NF-----AEKHNLPLYYVSAADGTNVVKLFQ 151 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchhH-HHHHH-HH-----HHHcCCeEEEEeCCCCCCHHHHHH
Confidence 999999999988888777543 3478999999999984321 11111 11 111356899999999999999999
Q ss_pred HHHHHHhhh
Q 029920 172 WLVQDIASR 180 (185)
Q Consensus 172 ~l~~~~~~~ 180 (185)
.+.+.+.++
T Consensus 152 ~l~~~~~~~ 160 (161)
T cd04124 152 DAIKLAVSY 160 (161)
T ss_pred HHHHHHHhc
Confidence 999887654
No 54
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.9e-29 Score=174.55 Aligned_cols=157 Identities=21% Similarity=0.339 Sum_probs=123.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
||+++|++|||||||++++.++.+. .+.+|.+... ..+..++ ..+++|||||++.+...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 7999999999999999999998885 5667776443 3344444 679999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+++++++.....|+..+.......+.|+++|+||+|+.+.... ++....+. .. ...+++++||++|.|++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~e~Sa~~g~~v~~l 156 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA----AE-MQAEYWSVSALSGENVREF 156 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH----HH-cCCeEEEEECCCCCCHHHH
Confidence 9999999999998888766543335789999999998543221 11111111 11 3457899999999999999
Q ss_pred HHHHHHHHhh
Q 029920 170 FDWLVQDIAS 179 (185)
Q Consensus 170 ~~~l~~~~~~ 179 (185)
|+.+.+.+.+
T Consensus 157 f~~l~~~~~~ 166 (170)
T cd04108 157 FFRVAALTFE 166 (170)
T ss_pred HHHHHHHHHH
Confidence 9999987743
No 55
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=2e-29 Score=177.62 Aligned_cols=159 Identities=23% Similarity=0.397 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+||+++|++|||||||++++.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 58999999999999999999988774 4455555333 2344444 6899999999999998889999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|++++.+++++..|+..+... ...+.|+++|+||+|+.... ...+... +. ...+.+++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~-l~-----~~~~~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGER-LA-----KEYGVPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHH-HH-----HHcCCeEEEEeCCCCCCHHH
Confidence 9999999999998888777654 33468999999999985322 2222222 11 11346899999999999999
Q ss_pred HHHHHHHHHhhhcc
Q 029920 169 GFDWLVQDIASRIY 182 (185)
Q Consensus 169 l~~~l~~~~~~~~~ 182 (185)
+|++|.+.+.+..+
T Consensus 154 l~~~l~~~~~~~~~ 167 (191)
T cd04112 154 AFTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998877643
No 56
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=1.8e-29 Score=181.51 Aligned_cols=165 Identities=18% Similarity=0.246 Sum_probs=124.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
.-..+||+++|+.|+|||||++++.++.+. .+.||.+.... .+..+ .+.+.+|||+|++.+..+...+++++|+++
T Consensus 10 ~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI 89 (232)
T cd04174 10 LVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 89 (232)
T ss_pred ceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence 345689999999999999999999988775 55677663332 23333 378999999999999999999999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcccccCccce-EEEe
Q 029920 89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLEAMDKTRHW-KIVG 157 (185)
Q Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~ 157 (185)
+|||++++++|+.+ ..|+..+.... ++.|+++|+||+|+.+... ...+....+. .++...++ +|++
T Consensus 90 lVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~-~~a~~~~~~~~~E 166 (232)
T cd04174 90 LCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGC-ALAKQLGAEVYLE 166 (232)
T ss_pred EEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHH-HHHHHcCCCEEEE
Confidence 99999999999985 66776665432 4789999999999854210 0111111111 12222455 6999
Q ss_pred ecccCCC-CHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGE-GLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~-~i~~l~~~l~~~~~~~ 180 (185)
|||++|. |++++|..++..+.++
T Consensus 167 tSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 167 CSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred ccCCcCCcCHHHHHHHHHHHHHHh
Confidence 9999998 8999999999887553
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.1e-29 Score=174.73 Aligned_cols=157 Identities=18% Similarity=0.287 Sum_probs=122.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++.+..+.. ..++.. .....+..++ ..+.+|||||++++...+..+++.+|++++|+|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEE
Confidence 489999999999999999999877643 334443 2223334433 678899999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
++++++++.+..|+..+.......+.|+++|+||+|+.... ..+....... ..+.+++++||++|.|++++|
T Consensus 81 ~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~i~~l~ 154 (164)
T smart00173 81 ITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELAR------QWGCPFLETSAKERVNVDEAF 154 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHH------HcCCEEEEeecCCCCCHHHHH
Confidence 99999999998888877766555578999999999986532 2222221111 134689999999999999999
Q ss_pred HHHHHHHhh
Q 029920 171 DWLVQDIAS 179 (185)
Q Consensus 171 ~~l~~~~~~ 179 (185)
++|++.+.+
T Consensus 155 ~~l~~~~~~ 163 (164)
T smart00173 155 YDLVREIRK 163 (164)
T ss_pred HHHHHHHhh
Confidence 999987653
No 58
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.97 E-value=3.2e-30 Score=166.48 Aligned_cols=172 Identities=34% Similarity=0.568 Sum_probs=156.2
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ 83 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 83 (185)
-|+.+.+ =.....+.++|..++|||||+|..+.+.+ ....||.++..+.+.-+++.+.+||.||++.|+++|+.|.++
T Consensus 10 ~wi~~~f-~k~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR~ 88 (186)
T KOG0075|consen 10 VWICNSF-WKEEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCRG 88 (186)
T ss_pred HHHHHHH-HHheeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhhc
Confidence 4555555 34568899999999999999999877555 578899999999999999999999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
+++++||+|+.+++.+...+..+..++..+...++|++|++||.|+..+.....+.+.++...... ..+-+|.+|+++.
T Consensus 89 v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitd-REvcC~siScke~ 167 (186)
T KOG0075|consen 89 VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITD-REVCCFSISCKEK 167 (186)
T ss_pred CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCcccccc-ceEEEEEEEEcCC
Confidence 999999999999999999999999999999899999999999999999999999999998877766 7788999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 029920 164 EGLLEGFDWLVQDIA 178 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~ 178 (185)
.|++.+.+||.+.-.
T Consensus 168 ~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSK 182 (186)
T ss_pred ccHHHHHHHHHHHhh
Confidence 999999999998654
No 59
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=2.8e-30 Score=176.58 Aligned_cols=154 Identities=18% Similarity=0.179 Sum_probs=114.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
+||+++|+.|||||||+.++..+.+.. +.++.+.....+..++ +.+.+|||+|++. ..+++.+|++++|||+
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~ 75 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSL 75 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEEC
Confidence 589999999999999999988777654 3344443345566666 6789999999975 2356789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++++|+.+..|+..+.......+.|+++|+||+|+.... .+++..............++|++|||++|.|++++|..+
T Consensus 76 ~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~-~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~ 154 (158)
T cd04103 76 ENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESN-PRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEA 154 (158)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC-CcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHH
Confidence 9999999999988888766544678999999999984311 111111111111112135789999999999999999998
Q ss_pred HHH
Q 029920 174 VQD 176 (185)
Q Consensus 174 ~~~ 176 (185)
.+.
T Consensus 155 ~~~ 157 (158)
T cd04103 155 AQK 157 (158)
T ss_pred Hhh
Confidence 864
No 60
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=9.5e-30 Score=175.29 Aligned_cols=156 Identities=23% Similarity=0.380 Sum_probs=122.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+||+++|++|+|||||++++.+..+.. ..++.+ .....+.+++ ..+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 46899999999999999999998877653 445554 3344556665 578999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++.++..+..|+..+... ...+.|+++|+||+|+..... .++...... ......++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAE-----KNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH-----HcCCcEEEEEECCCCCCHH
Confidence 99999999999988888887654 335789999999999865422 222222111 1133468999999999999
Q ss_pred HHHHHHHHH
Q 029920 168 EGFDWLVQD 176 (185)
Q Consensus 168 ~l~~~l~~~ 176 (185)
++++++.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999865
No 61
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=2e-30 Score=180.12 Aligned_cols=158 Identities=18% Similarity=0.270 Sum_probs=117.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|||||||+.++..+.+. .+.+|.+... ..+..++ ..+.+|||||++.+...+..+++++|++|+|||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 81 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFS 81 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEE
Confidence 79999999999999999999988774 5566665322 2334443 678999999999999999999999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHh--------cCcccccCccceEEEeecccC
Q 029920 93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKV--------LNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~--------~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
++++++|+.+.. |+..+... .++.|+++|+||+|+.+... .+..... ............++++|||++
T Consensus 82 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 159 (174)
T cd01871 82 LVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEecccc
Confidence 999999999865 55544432 35799999999999854321 1111111 001111121235899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQD 176 (185)
Q Consensus 163 ~~~i~~l~~~l~~~ 176 (185)
|.|++++|+.+++.
T Consensus 160 ~~~i~~~f~~l~~~ 173 (174)
T cd01871 160 QKGLKTVFDEAIRA 173 (174)
T ss_pred cCCHHHHHHHHHHh
Confidence 99999999998864
No 62
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=1.7e-29 Score=177.88 Aligned_cols=158 Identities=17% Similarity=0.248 Sum_probs=122.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
||+++|.+|+|||||+++|+.+.+. .+.+|.+.. ...+..++ +.+.+|||||++.+...+..+++.+|++++|||+
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSI 80 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEEC
Confidence 5899999999999999999988774 345555532 23334444 5689999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+++.+|+.+..|+..+..... ..+.|+++|+||+|+..... ..+.. .+ . ...+++++++||++|.|++++
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~-~~----~-~~~~~~~~e~SAk~~~~v~~l 154 (190)
T cd04144 81 TSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGA-AL----A-RRLGCEFIEASAKTNVNVERA 154 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHH-HH----H-HHhCCEEEEecCCCCCCHHHH
Confidence 999999999888887765432 35789999999999864322 22211 11 1 113568999999999999999
Q ss_pred HHHHHHHHhhhc
Q 029920 170 FDWLVQDIASRI 181 (185)
Q Consensus 170 ~~~l~~~~~~~~ 181 (185)
|+++++.+.++.
T Consensus 155 ~~~l~~~l~~~~ 166 (190)
T cd04144 155 FYTLVRALRQQR 166 (190)
T ss_pred HHHHHHHHHHhh
Confidence 999999876554
No 63
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.97 E-value=3.7e-29 Score=170.65 Aligned_cols=156 Identities=40% Similarity=0.667 Sum_probs=129.9
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
|+++|++|||||||++++.+..+. .+.++.+.....+..+...+.+||+||++.+...+..++..+|++++|+|++++.
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~ 81 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAADRT 81 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCCHH
Confidence 789999999999999999998774 5667777766667777899999999999999999999999999999999999988
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
++.....++..+.......++|+++|+||+|+.......+....+....... ..++++++|+++|.|+++++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 82 ALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITD-REVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccC-CceEEEEEEeccCCChHHHHHHHhh
Confidence 8888888888877655556799999999999876655555555544333322 4578999999999999999999875
No 64
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=1.8e-29 Score=173.46 Aligned_cols=156 Identities=19% Similarity=0.299 Sum_probs=121.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.+||+++|.+|+|||||++++..+.+. .+.+|.+ .....+..++ ..+++|||||++.+..++..+++++|++++||
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 379999999999999999999988775 3445443 3333444444 56889999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++|+.+..|+..+.......++|+++|+||+|+..... ..+. ..+. ...+.+++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~-~~~~-----~~~~~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEG-RALA-----EEWGCPFMETSAKSKTMVNEL 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHH-HHHH-----HHhCCEEEEecCCCCCCHHHH
Confidence 9999999999999888887654446799999999999854322 1111 1111 113468999999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
|.++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 65
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=2.7e-29 Score=173.13 Aligned_cols=157 Identities=20% Similarity=0.381 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.+||+++|++|||||||++++.+..+. .+.++.+. ....+..++ ..+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 479999999999999999999988775 34455553 333444444 5789999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|++++++|..+..|+..+... ..++.|+++++||+|+..... .++...... ..+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~-~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKRVVDYSEAQEFAD------ELGIPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCcCHHH
Confidence 9999999999999988877554 234689999999999854322 222222111 1456899999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|+++.+.+.+
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 66
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.9e-29 Score=160.84 Aligned_cols=166 Identities=45% Similarity=0.846 Sum_probs=156.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
..+.++|+.+|..++||||++..|+-+......||.++..+.+.+.+..|++||.+|+...+..|.+|+.+..++|||+|
T Consensus 14 ~~KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~D 93 (180)
T KOG0071|consen 14 GNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 93 (180)
T ss_pred CcccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhccCCceEEEEEe
Confidence 56689999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
..+....++++..+..++..+.-.+.++++.+||-|++++-.+.++.+.++.+.+.. ..|-+.++||.+|.++.|-+.|
T Consensus 94 sa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~-~~W~vqp~~a~~gdgL~eglsw 172 (180)
T KOG0071|consen 94 SADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRD-RNWYVQPSCALSGDGLKEGLSW 172 (180)
T ss_pred ccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccC-CccEeeccccccchhHHHHHHH
Confidence 999999999999999999988888899999999999999999999999999888655 7888999999999999999999
Q ss_pred HHHHHhh
Q 029920 173 LVQDIAS 179 (185)
Q Consensus 173 l~~~~~~ 179 (185)
+.+.+.+
T Consensus 173 lsnn~~~ 179 (180)
T KOG0071|consen 173 LSNNLKE 179 (180)
T ss_pred HHhhccC
Confidence 9887643
No 67
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=4.5e-29 Score=176.86 Aligned_cols=159 Identities=21% Similarity=0.338 Sum_probs=126.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
+..++|+++|++|+|||||++++.+..+. .+.+|.+.. ...+..++ ..+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 45799999999999999999999998875 456676643 33444444 57899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|++++++|+.+..|+..+... ....|+++|+||+|+..... ..+...... ..+++++++||++|.|+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAG------QMGISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEECCCCcCH
Confidence 999999999999999888876553 24689999999999865422 222222111 13468999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029920 167 LEGFDWLVQDIASR 180 (185)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (185)
+++|++|.+.+.+.
T Consensus 156 ~~lf~~l~~~~~~~ 169 (199)
T cd04110 156 EEMFNCITELVLRA 169 (199)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987653
No 68
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.97 E-value=3.2e-29 Score=173.45 Aligned_cols=158 Identities=17% Similarity=0.291 Sum_probs=123.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...+||+++|++|||||||++++.+..+.. ..++.+.. ...+..++ +.+.+||+||++.+..++..+++.+|+++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 457999999999999999999999887753 45566543 23344443 67889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+|||++++++++.+..|...+..... ..+.|+++++||+|+... ....+..+... .....+++++||++|.
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~e~Sa~~~~ 157 (170)
T cd04116 83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCR-----ENGDYPYFETSAKDAT 157 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHH-----HCCCCeEEEEECCCCC
Confidence 99999999999999888887765432 246899999999998632 23333333222 1123579999999999
Q ss_pred CHHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQD 176 (185)
Q Consensus 165 ~i~~l~~~l~~~ 176 (185)
|++++|+++++.
T Consensus 158 ~v~~~~~~~~~~ 169 (170)
T cd04116 158 NVAAAFEEAVRR 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998864
No 69
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=3.1e-29 Score=179.68 Aligned_cols=158 Identities=20% Similarity=0.294 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+||+++|++|||||||+++|.+..+. .+.+|.+.. ...+..+ .+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999988775 456676643 3344443 47899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
||++++++|+.+..|+..+..... ..+.|+++|+||+|+.+... ..+....+.. ..+++++++||++|.|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~-----~~~~~~~~iSAktg~gv~ 155 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQ-----ANGMESCLVSAKTGDRVN 155 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHH-----HcCCEEEEEECCCCCCHH
Confidence 999999999999888777765432 23578999999999864321 1111111111 144678999999999999
Q ss_pred HHHHHHHHHHhh
Q 029920 168 EGFDWLVQDIAS 179 (185)
Q Consensus 168 ~l~~~l~~~~~~ 179 (185)
++|+++++.+..
T Consensus 156 ~lf~~l~~~l~~ 167 (215)
T cd04109 156 LLFQQLAAELLG 167 (215)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 70
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=3.4e-29 Score=171.93 Aligned_cols=154 Identities=21% Similarity=0.345 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
++|+++|++|+|||||++++.++.+. .+.+|.+... ..+..++ ..+.+||++|++.+...+..++..+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999988775 4567776433 3455554 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
|++++++|+.+..|+..+... ...+.|+++|+||.|+...... .+....+.. ..+.+++++||++|.|++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~e~Sa~~~~~v~~~f 154 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAK-----EYGMDFFETSACTNSNIKESF 154 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCHHHHH
Confidence 999999999999888877554 2346899999999998654321 111222211 134679999999999999999
Q ss_pred HHHHHH
Q 029920 171 DWLVQD 176 (185)
Q Consensus 171 ~~l~~~ 176 (185)
.+|.+.
T Consensus 155 ~~l~~~ 160 (161)
T cd04117 155 TRLTEL 160 (161)
T ss_pred HHHHhh
Confidence 999865
No 71
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=3.2e-29 Score=178.95 Aligned_cols=161 Identities=24% Similarity=0.434 Sum_probs=126.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
.+||+++|++|+|||||++++.+..+.. ..+|.+.. ...+... .+.+++|||||++.+...+..+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 5899999999999999999999888754 34555533 3334432 3689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
|||++++++|+.+..|+..+.........|+++|+||+|+..... ..+....+. ...+++++++||++|.|+++
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLA-----KDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHH-----HHhCCEEEEEeCCCCCCHHH
Confidence 999999999999999999887664444678999999999865322 111122221 11457899999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029920 169 GFDWLVQDIASRI 181 (185)
Q Consensus 169 l~~~l~~~~~~~~ 181 (185)
+|++|.+.+.++.
T Consensus 157 ~f~~l~~~~~~~~ 169 (211)
T cd04111 157 AFELLTQEIYERI 169 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 72
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=3.3e-30 Score=181.35 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=121.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
.||+++|++|||||||++++.++.+.. +.+|.+.... .+..++ ..+.+|||+|++.+..++..++..+|++++|||
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 379999999999999999999988854 5566653332 333333 689999999999998888889999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccC
Q 029920 93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~ 162 (185)
++++++|+.+.. |+..+... .++.|+++|+||+|+.......+..... ..........++++++||++
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 158 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKL 158 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999998864 66665543 3479999999999996653322211110 11111122336899999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 029920 163 GEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~ 179 (185)
|.|++++|+++.+.+..
T Consensus 159 ~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 159 NRGVNEAFTEAARVALN 175 (189)
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988764
No 73
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.97 E-value=6.7e-29 Score=171.58 Aligned_cols=158 Identities=20% Similarity=0.323 Sum_probs=124.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+||+++|++|+|||||++++.+..+.. ..++.+... ..+..++ ..+.+||+||++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999887753 344544332 3334443 689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++.++..+..|+..+... ..++.|+++|+||.|+.... ..++...... ..+++++++||+++.|++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAFAK------EHGLIFMETSAKTASNVE 155 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCHH
Confidence 99999999999999888877654 34579999999999986432 2222222221 145679999999999999
Q ss_pred HHHHHHHHHHhh
Q 029920 168 EGFDWLVQDIAS 179 (185)
Q Consensus 168 ~l~~~l~~~~~~ 179 (185)
++|.++.+.+.+
T Consensus 156 ~~~~~~~~~~~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999987754
No 74
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=6.5e-29 Score=174.61 Aligned_cols=158 Identities=23% Similarity=0.381 Sum_probs=125.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|+|||||++++.++.+.. +.+|.+.. ...+..++ +.+.+||+||++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 589999999999999999999998864 66776643 33444443 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++|..+..|+..+... ...+.|+++++||+|+.+... ..+.. .+. ...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~-~~~~~~~ivv~nK~Dl~~~~~v~~~~~~-~~~-----~~~~~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRY-ARENVIKVIVANKSDLVNNKVVDSNIAK-SFC-----DSLNIPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECCCCcccccCCHHHHH-HHH-----HHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999988877654 234589999999999864322 22221 111 113558999999999999999
Q ss_pred HHHHHHHHhhhc
Q 029920 170 FDWLVQDIASRI 181 (185)
Q Consensus 170 ~~~l~~~~~~~~ 181 (185)
|+++.+.+.++.
T Consensus 154 f~~l~~~~~~~~ 165 (188)
T cd04125 154 FILLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHHHh
Confidence 999999886543
No 75
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.97 E-value=9.8e-30 Score=181.97 Aligned_cols=163 Identities=20% Similarity=0.269 Sum_probs=122.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
++||+|+|++|||||||++++.++.++ .+.||.+.... .+.+++ +.+.+|||+|++.+..++..+++.+|++++||
T Consensus 1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 379999999999999999999988875 56677764432 344443 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HH--------HHHhcCcccccCccc-eEEEeeccc
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TE--------IAKVLNLEAMDKTRH-WKIVGCSAY 161 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~--------~~~~~~~~~~~~~~~-~~~~~~Sa~ 161 (185)
|++++++|+.+..+|...+.. ..++.|+++|+||+|+.+.... .. +....+.. ++...+ .+|++|||+
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~-~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~-~ak~~~~~~y~E~SAk 158 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQE-FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTV-LAKQVGAVSYVECSSR 158 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHH-HHHHcCCCEEEEcCCC
Confidence 999999999997655544433 3467999999999998653211 11 11111111 222234 489999999
Q ss_pred CCCC-HHHHHHHHHHHHhhh
Q 029920 162 TGEG-LLEGFDWLVQDIASR 180 (185)
Q Consensus 162 ~~~~-i~~l~~~l~~~~~~~ 180 (185)
++.| ++++|..+......+
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 159 SSERSVRDVFHVATVASLGR 178 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhc
Confidence 9985 999999998876543
No 76
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=6.7e-30 Score=165.64 Aligned_cols=163 Identities=24% Similarity=0.301 Sum_probs=132.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
..+-.+||+++|..|+|||+|++++..+-++ ..+.|++ +..+++++++ .++++|||+|+++|++..+.|++.+++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsaha 82 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHA 82 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcce
Confidence 3456799999999999999999999988775 4566777 4455666654 789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
+|+|||++...+|+.+.+|+.++-.+ ...+.--|+|+||+|+.+. +.+..+-+.+. .. .+..|.++||++..|
T Consensus 83 lilvydiscqpsfdclpewlreie~y-an~kvlkilvgnk~d~~drrevp~qigeefs----~~-qdmyfletsakea~n 156 (213)
T KOG0095|consen 83 LILVYDISCQPSFDCLPEWLREIEQY-ANNKVLKILVGNKIDLADRREVPQQIGEEFS----EA-QDMYFLETSAKEADN 156 (213)
T ss_pred EEEEEecccCcchhhhHHHHHHHHHH-hhcceEEEeeccccchhhhhhhhHHHHHHHH----Hh-hhhhhhhhcccchhh
Confidence 99999999999999999999998777 3345677899999999765 22333333333 22 667799999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++.+|..+.-.+...
T Consensus 157 ve~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 157 VEKLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988766543
No 77
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.97 E-value=4.4e-29 Score=171.33 Aligned_cols=152 Identities=15% Similarity=0.306 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+||+++|++|+|||||++++.++.+. .+.++.+... ..+... ...+++|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 58999999999999999999988775 4456665433 333333 4789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|+++++++..+..|+..+.. ...+.|+++|+||+|+..... ..+...... ..+++++++||++|.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~--~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEA--ECGDIPMVLVQTKIDLLDQAVITNEEAEALAK------RLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHH--hCCCCCEEEEEEChhcccccCCCHHHHHHHHH------HcCCeEEEEECCCCCCHH
Confidence 9999999999998888777644 235799999999999865322 222221111 145689999999999999
Q ss_pred HHHHHHHHH
Q 029920 168 EGFDWLVQD 176 (185)
Q Consensus 168 ~l~~~l~~~ 176 (185)
+++++|.+.
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998764
No 78
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=1.2e-29 Score=178.14 Aligned_cols=156 Identities=21% Similarity=0.285 Sum_probs=118.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|+|||||++++.++.+. .+.++.+... ..+... ...+.+|||||++.+...+..+++.+|++++||
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~ 80 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY 80 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence 58999999999999999999988875 4445554332 223333 368999999999999999999999999999999
Q ss_pred eCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC------HHHHHHhcCcccccCccce-EEEeecccCC
Q 029920 92 DSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT------PTEIAKVLNLEAMDKTRHW-KIVGCSAYTG 163 (185)
Q Consensus 92 d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (185)
|++++++|+.+.. |+..+... .++.|+++|+||+|+..... ..+.... ... .+. +++++||++|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~-----~~~-~~~~~~~e~Sa~~~ 152 (187)
T cd04132 81 AVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESV-----AKK-QGAFAYLECSAKTM 152 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHH-----HHH-cCCcEEEEccCCCC
Confidence 9999999998865 55444332 34789999999999865321 2121111 111 333 7999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|++++|+.+.+.+...
T Consensus 153 ~~v~~~f~~l~~~~~~~ 169 (187)
T cd04132 153 ENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999987654
No 79
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=4.4e-29 Score=171.20 Aligned_cols=154 Identities=24% Similarity=0.413 Sum_probs=123.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++.+..+.. ..++.+.... .+.+++ ..+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 589999999999999999999887753 5566654333 334443 68999999999999888899999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
|++++.+++....|+..+.......+.|+++++||+|+.... ..++...... ..+++++++||++|.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~~~ 154 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFAR------KHNMLFIETSAKTRDGVQQAF 154 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHH------HcCCEEEEEecCCCCCHHHHH
Confidence 999999999988888877766556689999999999987332 3333322221 146789999999999999999
Q ss_pred HHHHHH
Q 029920 171 DWLVQD 176 (185)
Q Consensus 171 ~~l~~~ 176 (185)
+.+.+.
T Consensus 155 ~~~~~~ 160 (161)
T cd01863 155 EELVEK 160 (161)
T ss_pred HHHHHh
Confidence 998875
No 80
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.97 E-value=7.1e-29 Score=180.56 Aligned_cols=156 Identities=21% Similarity=0.274 Sum_probs=124.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++.++.+. .+.+|.+ +....+.+++ +.+.+|||+|++.+..++..++..+|++|+|||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfd 80 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFS 80 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEe
Confidence 58999999999999999999888775 4566665 3344455555 678899999999988888888999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--------ccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 93 SSDLRRLDDCKMELDNLLKEE--------RLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~--------~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
++++++|+.+..|+..+.... ...+.|+++|+||+|+.. ....+++...+.. ...++++++||++
T Consensus 81 v~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~-----~~~~~~~evSAkt 155 (247)
T cd04143 81 LDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGG-----DENCAYFEVSAKK 155 (247)
T ss_pred CCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHh-----cCCCEEEEEeCCC
Confidence 999999999988888876541 234789999999999864 3344444443321 1356799999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQDI 177 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (185)
|.|++++|++|.+..
T Consensus 156 g~gI~elf~~L~~~~ 170 (247)
T cd04143 156 NSNLDEMFRALFSLA 170 (247)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999865
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.97 E-value=5.2e-29 Score=172.44 Aligned_cols=158 Identities=19% Similarity=0.351 Sum_probs=123.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhH-HHHHhhhcCCCEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIR-SYWRNYFEQTDGLVW 89 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~ 89 (185)
.++|+++|++|+|||||++++.+..++ .+.++.+.. ...+..++ +.+.+||+||++.+. .++..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 589999999999999999999988775 455665533 33444544 789999999999886 567888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccC---CCC
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYT---GEG 165 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 165 (185)
|||+++++++..+..|+..+.......+.|+++|+||+|+..... ..+....+.. ...++++++||++ +.|
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD-----AHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH-----HcCCcEEEEeccCCcCCCC
Confidence 999999999999999888777655456799999999999864332 1222222221 1447899999999 889
Q ss_pred HHHHHHHHHHHHh
Q 029920 166 LLEGFDWLVQDIA 178 (185)
Q Consensus 166 i~~l~~~l~~~~~ 178 (185)
++++|..+++.++
T Consensus 157 i~~~f~~l~~~~~ 169 (170)
T cd04115 157 VEAIFMTLAHKLK 169 (170)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988763
No 82
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.97 E-value=6.8e-29 Score=170.56 Aligned_cols=155 Identities=21% Similarity=0.349 Sum_probs=124.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.+||+++|++|||||||++++.+..+.. ..++.+.. ...+.++ ...+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999999999999998865 66666632 3344444 36889999999999998899999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|+++++++.....|+..+.... .++.|+++++||+|+.... ...+....... .+++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADE------NGLLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHH------cCCEEEEEECCCCCCHHH
Confidence 99999999999998888876653 3679999999999986322 23332222211 346799999999999999
Q ss_pred HHHHHHHHH
Q 029920 169 GFDWLVQDI 177 (185)
Q Consensus 169 l~~~l~~~~ 177 (185)
+++++.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999875
No 83
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.97 E-value=1.5e-28 Score=169.21 Aligned_cols=156 Identities=19% Similarity=0.353 Sum_probs=122.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+||+++|++|||||||++++.+..+. ...++.+. ....+..++ ..+++||+||++.+...+..+++.++++++
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~ 81 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL 81 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence 3579999999999999999999988775 44566654 333444444 578999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.... ..++...... ...++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~ 154 (165)
T cd01868 82 VYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAE------KNGLSFIETSALDGTNVE 154 (165)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHH------HcCCEEEEEECCCCCCHH
Confidence 999999999999998888765542 3368999999999986432 2222222211 145689999999999999
Q ss_pred HHHHHHHHHH
Q 029920 168 EGFDWLVQDI 177 (185)
Q Consensus 168 ~l~~~l~~~~ 177 (185)
++++++.+.+
T Consensus 155 ~l~~~l~~~i 164 (165)
T cd01868 155 EAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 84
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.97 E-value=3.8e-29 Score=176.64 Aligned_cols=151 Identities=18% Similarity=0.293 Sum_probs=121.6
Q ss_pred EcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEE--EE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 22 VGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTV--TY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 22 ~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
+|++|||||||+++++.+.+. .+.+|.+...... .. ..+.+.+|||+|++.+..++..+++++|++++|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 599999999999999987775 5677877555433 33 347899999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
.+|..+..|+..+.+.. ++.|+++|+||+|+.......+.. . ++....+++++|||++|.|++++|++|++.
T Consensus 81 ~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~~~v~~~~~-~-----~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~ 152 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKDRKVKAKSI-T-----FHRKKNLQYYDISAKSNYNFEKPFLWLARK 152 (200)
T ss_pred HHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCHHHH-H-----HHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence 99999988888776643 479999999999985432211111 1 112256789999999999999999999998
Q ss_pred Hhhh
Q 029920 177 IASR 180 (185)
Q Consensus 177 ~~~~ 180 (185)
+.+.
T Consensus 153 i~~~ 156 (200)
T smart00176 153 LIGD 156 (200)
T ss_pred HHhc
Confidence 8664
No 85
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=3.7e-29 Score=172.36 Aligned_cols=154 Identities=18% Similarity=0.232 Sum_probs=117.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++.++.+. .+.++.+.... .+.. ....+.+|||||++.+..++..++..+|++++|||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d 81 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYS 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEE
Confidence 78999999999999999999988874 44555553222 2222 34688999999999999888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
++++++++.+..|+..+.... ..++.|+++|+||+|+..... ..+.. .+. .....+++++||++|.|+++
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~-----~~~~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 82 VTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGA-ACA-----TEWNCAFMETSAKTNHNVQE 155 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHH-HHH-----HHhCCcEEEeecCCCCCHHH
Confidence 999999999888876554432 225789999999999865222 11111 111 11345799999999999999
Q ss_pred HHHHHHHH
Q 029920 169 GFDWLVQD 176 (185)
Q Consensus 169 l~~~l~~~ 176 (185)
+|++|++.
T Consensus 156 ~f~~l~~~ 163 (165)
T cd04140 156 LFQELLNL 163 (165)
T ss_pred HHHHHHhc
Confidence 99999764
No 86
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.97 E-value=1.8e-28 Score=168.55 Aligned_cols=156 Identities=22% Similarity=0.381 Sum_probs=123.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++.+..+. ...++.+... ..+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999988764 3445555433 3345544 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++.+++.+..|+..+.... .+++|+++++||+|+.... ..+....... ..+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAE------EHGLPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHH------HcCCeEEEEeCCCCCCHHHH
Confidence 9999999999888877776653 2579999999999986532 2223322211 14567999999999999999
Q ss_pred HHHHHHHHhh
Q 029920 170 FDWLVQDIAS 179 (185)
Q Consensus 170 ~~~l~~~~~~ 179 (185)
++++.+.+.+
T Consensus 154 ~~~i~~~~~~ 163 (164)
T smart00175 154 FEELAREILK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998754
No 87
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=8.8e-29 Score=176.93 Aligned_cols=162 Identities=20% Similarity=0.352 Sum_probs=127.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....+||+++|++|+|||||+++|.+..+..+.++.+... ..+..++ ..+.+|||||++.+..++..+++.+|+++
T Consensus 11 ~~~~~kv~ivG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 11 YDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 4457899999999999999999999988877777777543 3344443 67899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKE-ERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
+|||++++++|+.+...|...+.. ....+.|+++|+||+|+..... .++...... ...++++++||+++.|
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~------~~~~~~~e~SAk~~~~ 164 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK------EHGCLFLECSAKTREN 164 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence 999999999999988765554442 2234689999999999864322 222221111 1456799999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.+.
T Consensus 165 v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 165 VEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 88
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=1.9e-28 Score=175.68 Aligned_cols=162 Identities=20% Similarity=0.313 Sum_probs=128.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+||+++|++|||||||+++|.+..+. .+.+|.+.. ...+..++ +.+.+||+||++.+...+..+++.++++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 446789999999999999999999988775 455666643 33445544 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+...... .+....+.. ...++++++||++|.|+
T Consensus 89 ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~-----~~~~~~~e~SA~~g~~v 162 (216)
T PLN03110 89 LLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAE-----KEGLSFLETSALEATNV 162 (216)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 9999999999999998888776554 3357999999999998543221 122222221 25678999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029920 167 LEGFDWLVQDIASR 180 (185)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (185)
+++|+++++.+.+.
T Consensus 163 ~~lf~~l~~~i~~~ 176 (216)
T PLN03110 163 EKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988653
No 89
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.97 E-value=4.2e-29 Score=176.26 Aligned_cols=161 Identities=20% Similarity=0.286 Sum_probs=121.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc--cccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV--ISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~--~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+||+++|++|+|||||++++.++.+.. +.+|.+... ..+..++ ..+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 589999999999999999999888753 666766433 3455554 5677999999999888888899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
||++++.+++....|+..+... .++.|+++|+||+|+..... ...+.... ...+......+++++||++|.|++++
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~-~~~~~~~~~~~~~~~Sa~~~~gv~~l 157 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHD-VQDFADEIKAQHFETSSKTGQNVDEL 157 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHH-HHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 9999999999888877776543 24789999999999854321 11110000 00111113467899999999999999
Q ss_pred HHHHHHHHhhh
Q 029920 170 FDWLVQDIASR 180 (185)
Q Consensus 170 ~~~l~~~~~~~ 180 (185)
++++.+.+.+.
T Consensus 158 ~~~i~~~~~~~ 168 (193)
T cd04118 158 FQKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHHh
Confidence 99999887553
No 90
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.97 E-value=1.9e-28 Score=168.03 Aligned_cols=154 Identities=22% Similarity=0.334 Sum_probs=120.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.||+++|++|||||||++++.+..+.. ..++.+ +....+..++ ..+++||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 489999999999999999999887753 344444 3344455544 57999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
|++++++|.....|+..+.... ..+.|+++++||+|+..... ..+....+.. ..+.+++++||+++.|+++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~v~~l~ 154 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAK-----ELNAMFIETSAKAGHNVKELF 154 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHH-----HhCCEEEEEeCCCCCCHHHHH
Confidence 9999999999998888876543 23699999999999853321 2222222211 145789999999999999999
Q ss_pred HHHHHH
Q 029920 171 DWLVQD 176 (185)
Q Consensus 171 ~~l~~~ 176 (185)
+++.+.
T Consensus 155 ~~i~~~ 160 (161)
T cd01861 155 RKIASA 160 (161)
T ss_pred HHHHHh
Confidence 999875
No 91
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.97 E-value=1.9e-28 Score=168.06 Aligned_cols=154 Identities=21% Similarity=0.330 Sum_probs=120.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|+|||||++++.+..+. ...++.+.. ...+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999988764 444555433 23344444 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+++++++..+..|+..+... ..++.|+++++||+|+.... ..++....... .+++++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQE------NGLLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHH------cCCEEEEEECCCCCCHHHH
Confidence 999999999998887766443 34679999999999986532 22222222211 3478999999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
|+++++.+
T Consensus 154 ~~~~~~~~ 161 (161)
T cd04113 154 FLKCARSI 161 (161)
T ss_pred HHHHHHhC
Confidence 99998753
No 92
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.6e-28 Score=168.68 Aligned_cols=157 Identities=23% Similarity=0.320 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++.+..+. ...++... .......+ ...+.+||+||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFS 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEE
Confidence 58999999999999999999987764 33343332 22223333 4689999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
++++.++.....++..+.......++|+++|+||+|+... ....+....... .+.+++++||++|.|++++|
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~~l~ 154 (164)
T cd04139 81 ITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ------WGVPYVETSAKTRQNVEKAF 154 (164)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH------hCCeEEEeeCCCCCCHHHHH
Confidence 9999999999999998887655567999999999998652 222222222211 34689999999999999999
Q ss_pred HHHHHHHhh
Q 029920 171 DWLVQDIAS 179 (185)
Q Consensus 171 ~~l~~~~~~ 179 (185)
+++.+.+.+
T Consensus 155 ~~l~~~~~~ 163 (164)
T cd04139 155 YDLVREIRQ 163 (164)
T ss_pred HHHHHHHHh
Confidence 999987754
No 93
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.5e-29 Score=161.96 Aligned_cols=164 Identities=21% Similarity=0.315 Sum_probs=133.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+|++++|+.|+|||+|++++..+++. ..++|+++.. +.+.+++ +++++|||+|+++|++..+.|++++.+.
T Consensus 6 YDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 6 YDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 345689999999999999999999999885 5667888554 4455543 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
++|||++++++|..+..|+.+.... ..+++-+++++||.|+....+..... ...++..+...+.++||++|.|++
T Consensus 86 lLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflE----As~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 86 LLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLE----ASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred EEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHH----HHhhhcccceeeeeecccccccHH
Confidence 9999999999999999999987544 56788999999999996653332211 112222267789999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029920 168 EGFDWLVQDIASRI 181 (185)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (185)
|.|-...+.+..++
T Consensus 161 EaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 161 EAFLKCARTILNKI 174 (214)
T ss_pred HHHHHHHHHHHHHH
Confidence 99988888776554
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.96 E-value=1e-28 Score=174.89 Aligned_cols=161 Identities=17% Similarity=0.231 Sum_probs=125.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
||+++|++|+|||||++++.+..+.. +.++.. .....+.+++ +.+++||+||+..+..++..++..+|++++|+|+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~ 80 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAV 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEEC
Confidence 68999999999999999999887753 344443 3334455555 6889999999999988888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
+++.+++....|+..+.......+.|+++|+||+|+..... ........ ....+.+++++||++|.|++++|
T Consensus 81 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~-----~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 81 DDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTV-----ELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHH-----HhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999988888887765556799999999999865311 11111111 11134578999999999999999
Q ss_pred HHHHHHHhhhccc
Q 029920 171 DWLVQDIASRIYL 183 (185)
Q Consensus 171 ~~l~~~~~~~~~~ 183 (185)
+++.+.+....+.
T Consensus 156 ~~l~~~~~~~~~~ 168 (198)
T cd04147 156 KELLRQANLPYNL 168 (198)
T ss_pred HHHHHHhhccccc
Confidence 9999987654443
No 95
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=2.7e-28 Score=167.80 Aligned_cols=154 Identities=23% Similarity=0.321 Sum_probs=118.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC--CC-cccccCcceEE--EEEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE--DT-SVISPTLGFNI--KTVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~--~~-~~~~~t~~~~~--~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
+||+++|++|||||||++++.++ .+ ..+.++.+... ..+.. ....+.+|||||++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 33 35556665333 23333 3478999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH-HHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE-IAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|+|+++++++.....|+..+.... .+.|+++|+||+|+.+...... ....+. ...+.+++++||+++.|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~ 153 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFA-----QANQLKFFKTSALRGVGYE 153 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHH-----HHcCCeEEEEeCCCCCChH
Confidence 9999999999998888887765542 4689999999999865432211 111111 1134679999999999999
Q ss_pred HHHHHHHHHH
Q 029920 168 EGFDWLVQDI 177 (185)
Q Consensus 168 ~l~~~l~~~~ 177 (185)
++++.+.+.+
T Consensus 154 ~l~~~l~~~~ 163 (164)
T cd04101 154 EPFESLARAF 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.96 E-value=4.8e-28 Score=167.69 Aligned_cols=160 Identities=19% Similarity=0.299 Sum_probs=122.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|||||||++++.+..+. ...++.+. ....+.+.+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999988764 33344443 233344444 56789999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
|+++++++.....|...++.... ..++|+++|+||+|+.. ....++....... ....+++++||++|.|+
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv 155 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQS-----NGNIPYFETSAKEAINV 155 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHH-----cCCceEEEEECCCCCCH
Confidence 99999999888777766655432 23789999999999973 2233333322221 12368999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
+++++++.+.+.+..
T Consensus 156 ~~l~~~i~~~~~~~~ 170 (172)
T cd01862 156 EQAFETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887653
No 97
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.96 E-value=2.7e-28 Score=167.46 Aligned_cols=154 Identities=24% Similarity=0.417 Sum_probs=124.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
||+++|++|||||||++++.++.+. .+.+|.+... ..+..++ +.+.+||++|++.+......+++++|++++|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 7999999999999999999988875 4566765443 3344444 679999999999999888899999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
+++++||+.+..|+..+..... .+.|+++++||+|+.+ ....++...... . .+.+++++||+++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~-----~-~~~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAK-----E-LGVPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHH-----H-TTSEEEEEBTTTTTTHHHHH
T ss_pred cccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHH-----H-hCCEEEEEECCCCCCHHHHH
Confidence 9999999999988888766543 4689999999999875 333333332221 1 44789999999999999999
Q ss_pred HHHHHHHh
Q 029920 171 DWLVQDIA 178 (185)
Q Consensus 171 ~~l~~~~~ 178 (185)
..+++.+.
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998764
No 98
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=4.3e-28 Score=171.44 Aligned_cols=160 Identities=21% Similarity=0.250 Sum_probs=118.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhH--------HHHHhhhcC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIR--------SYWRNYFEQ 83 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~--------~~~~~~~~~ 83 (185)
+||+|+|.+|+|||||++++.++.+. .+.|+.+. ....+..++ +.+.+|||||...+. .....+++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 58999999999999999999988875 35566542 223445555 678899999965321 113345789
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+|++++|||++++++|+.+..|+..+.... ...++|+++|+||+|+..... ..+....+ ......++++++||
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~----~~~~~~~~~~e~Sa 156 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVL----VRKSWKCGYLECSA 156 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHH----HHHhcCCcEEEecC
Confidence 999999999999999999988888777653 245799999999999954321 11111111 11114578999999
Q ss_pred cCCCCHHHHHHHHHHHHhhh
Q 029920 161 YTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~ 180 (185)
++|.|++++|+.+++.+..+
T Consensus 157 k~g~~v~~lf~~i~~~~~~~ 176 (198)
T cd04142 157 KYNWHILLLFKELLISATTR 176 (198)
T ss_pred CCCCCHHHHHHHHHHHhhcc
Confidence 99999999999999877654
No 99
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=9e-28 Score=171.47 Aligned_cols=160 Identities=19% Similarity=0.330 Sum_probs=125.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...+||+++|++|+|||||++++.+..+.. ..++.+.. ...+..++ +.+.+|||+|++.+..++..++..+|+++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~v 83 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGAL 83 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999887653 45565543 33344444 57889999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|+++++++..+..|+..+... ..++.|+++++||+|+... ...++...... ..+++++++||+++.|+
T Consensus 84 lv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~e~Sa~~~~~v 156 (210)
T PLN03108 84 LVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAK------EHGLIFMEASAKTAQNV 156 (210)
T ss_pred EEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHH------HcCCEEEEEeCCCCCCH
Confidence 999999999999988887776544 3357899999999998653 22333232221 14568999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029920 167 LEGFDWLVQDIASR 180 (185)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (185)
+++|+++++.+.++
T Consensus 157 ~e~f~~l~~~~~~~ 170 (210)
T PLN03108 157 EEAFIKTAAKIYKK 170 (210)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887654
No 100
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-29 Score=170.14 Aligned_cols=163 Identities=21% Similarity=0.354 Sum_probs=133.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-ccCcceEEEE--EEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SPTLGFNIKT--VTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~~~~~~~--~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
+.+..+||+++|++++|||-|+.++..+.+... -+|+++...+ +.+++ +..++|||+|++++++....|++++.+
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG 89 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG 89 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence 356679999999999999999999999999754 4677766554 44444 788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
+++|||++...+|+++..|+.++..+ ..+++++++|+||+||..... +.+....++ ...+..|+++||.++.|
T Consensus 90 AllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~A-----e~~~l~f~EtSAl~~tN 163 (222)
T KOG0087|consen 90 ALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFA-----EKEGLFFLETSALDATN 163 (222)
T ss_pred eEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHH-----HhcCceEEEeccccccc
Confidence 99999999999999999999998776 456899999999999865211 122222222 22667899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
+++.|+.++..+.+.
T Consensus 164 Ve~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 164 VEKAFERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877654
No 101
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=1.4e-28 Score=170.72 Aligned_cols=159 Identities=18% Similarity=0.253 Sum_probs=116.0
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
|+|+|++|||||||++++.++.+.. +.++..... ..+..++ +.+.+|||||++.+..++..+++.+|++++|||++
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECC
Confidence 5899999999999999999988753 444444222 2233433 57999999999999888888999999999999999
Q ss_pred CcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHH--------HhcCcccccCccceEEEeecccCCC
Q 029920 95 DLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-EIA--------KVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 95 ~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
++++|+.+.. |+..+... .++.|+++|+||+|+....... ++. ..............+++++||++|.
T Consensus 81 ~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 158 (174)
T smart00174 81 SPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQE 158 (174)
T ss_pred CHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 9999999865 55555443 3579999999999986532111 110 0000111112122479999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
|++++|+.+.+.+.+
T Consensus 159 ~v~~lf~~l~~~~~~ 173 (174)
T smart00174 159 GVREVFEEAIRAALN 173 (174)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999987643
No 102
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.2e-28 Score=167.86 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCc-ceEEEE--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTL-GFNIKT--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~-~~~~~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
+||+++|++|+|||||++++.++.++...++. ...... +...+..+.+|||||.+.+...+..++..+|++++|||+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~ 80 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSV 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEEC
Confidence 48999999999999999999998885433322 211111 222457899999999988877777888999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc-eEEEeecccCCCCHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH-WKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~ 172 (185)
+++.+++.+..+|...+... ..+.|+++|+||+|+.+............. ....... .+++++||++|.|++++|+.
T Consensus 81 ~~~~s~~~~~~~~~~~i~~~-~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~Sa~~~~~v~~lf~~ 158 (166)
T cd01893 81 DRPSTLERIRTKWLPLIRRL-GVKVPIILVGNKSDLRDGSSQAGLEEEMLP-IMNEFREIETCVECSAKTLINVSEVFYY 158 (166)
T ss_pred CCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhcccccchhHHHHHHHH-HHHHHhcccEEEEeccccccCHHHHHHH
Confidence 99999999865554444432 247999999999999765432111111100 0000011 37999999999999999999
Q ss_pred HHHHHhh
Q 029920 173 LVQDIAS 179 (185)
Q Consensus 173 l~~~~~~ 179 (185)
+.+.+.+
T Consensus 159 ~~~~~~~ 165 (166)
T cd01893 159 AQKAVLH 165 (166)
T ss_pred HHHHhcC
Confidence 9887654
No 103
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.8e-29 Score=160.44 Aligned_cols=161 Identities=19% Similarity=0.362 Sum_probs=129.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--E-EE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--V-TY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~-~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+|+.++|+..+|||+++.+.++..+. ....|.|+..+. + +. ..+.+++|||+|++.++.+...++++++++|+
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL 99 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL 99 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence 4579999999999999999999998885 556777754443 2 11 23789999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
|||+++.+||..+..|...+..+ ...+.|+|+++||||+.++... .+.-..+.. ..+..||++||+.+.|+++
T Consensus 100 myDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~-----~LGfefFEtSaK~NinVk~ 173 (193)
T KOG0093|consen 100 MYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLAD-----QLGFEFFETSAKENINVKQ 173 (193)
T ss_pred EEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHH-----HhChHHhhhcccccccHHH
Confidence 99999999999999988887666 5678999999999999665322 111111111 1556799999999999999
Q ss_pred HHHHHHHHHhhhc
Q 029920 169 GFDWLVQDIASRI 181 (185)
Q Consensus 169 l~~~l~~~~~~~~ 181 (185)
+|+.+++.+-+++
T Consensus 174 ~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 174 VFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999876543
No 104
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=3.9e-29 Score=164.28 Aligned_cols=164 Identities=20% Similarity=0.361 Sum_probs=130.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccc-cCcceEEE--EEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVIS-PTLGFNIK--TVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-~t~~~~~~--~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..++++|+|++-+|||+|++.+..++++..+ ||.++... .++.. .+++++|||+|++.|+++...|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 4689999999999999999999999997655 67764322 23332 278999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCC-CeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSG-ASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|||+++++||+....|+.+.......|. +-+.+|++|+|+.+.... ....++ .++..+++.|+++||++|.|++
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV---t~EEaE-klAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV---TAEEAE-KLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccc---cHHHHH-HHHHhcCceEEEecccCCCcHH
Confidence 99999999999999999988776655444 456799999999754222 222222 2222388999999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 029920 168 EGFDWLVQDIASRIY 182 (185)
Q Consensus 168 ~l~~~l~~~~~~~~~ 182 (185)
+.|..+.+.+...+.
T Consensus 163 EAF~mlaqeIf~~i~ 177 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQ 177 (213)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988766543
No 105
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=1.9e-29 Score=163.13 Aligned_cols=160 Identities=23% Similarity=0.386 Sum_probs=130.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
-.+.++.+++|++|+|||+|+-++....++ .+..|++ +..+++.+++ +++++|||+|++.|+.+...|+++.+++
T Consensus 5 ~dhLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv 84 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGV 84 (198)
T ss_pred HHHHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceE
Confidence 345678899999999999999999999886 4555666 5555666644 8999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
++|||+++.+||.++..|++++-. .++..|-++|+||+|.++... ..+....++ ...++.+|++||+.+.|+
T Consensus 85 ~vVYDVTn~ESF~Nv~rWLeei~~--ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A-----~~mgie~FETSaKe~~Nv 157 (198)
T KOG0079|consen 85 IVVYDVTNGESFNNVKRWLEEIRN--NCDSVPKVLVGNKNDDPERRVVDTEDARAFA-----LQMGIELFETSAKENENV 157 (198)
T ss_pred EEEEECcchhhhHhHHHHHHHHHh--cCccccceecccCCCCccceeeehHHHHHHH-----HhcCchheehhhhhcccc
Confidence 999999999999999999999865 445889999999999865422 122222222 225677899999999999
Q ss_pred HHHHHHHHHHHhh
Q 029920 167 LEGFDWLVQDIAS 179 (185)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (185)
+..|.-|.+.+.+
T Consensus 158 E~mF~cit~qvl~ 170 (198)
T KOG0079|consen 158 EAMFHCITKQVLQ 170 (198)
T ss_pred hHHHHHHHHHHHH
Confidence 9999998887654
No 106
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.4e-28 Score=169.94 Aligned_cols=156 Identities=18% Similarity=0.246 Sum_probs=121.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++.+..++..+++.++++++|+|
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~ 81 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYS 81 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEE
Confidence 68999999999999999999988774 445555422 23344443 688999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
++++++++....|...+.......+.|+++++||.|+..... ..+... +. ......+++++||+++.|++++|
T Consensus 82 ~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~~SA~~~~~i~~~f 156 (168)
T cd04177 82 VTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVS-LS----QQWGNVPFYETSARKRTNVDEVF 156 (168)
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHH-HH----HHcCCceEEEeeCCCCCCHHHHH
Confidence 999999999988877776644456799999999999854322 122111 11 11123689999999999999999
Q ss_pred HHHHHHH
Q 029920 171 DWLVQDI 177 (185)
Q Consensus 171 ~~l~~~~ 177 (185)
+++++.+
T Consensus 157 ~~i~~~~ 163 (168)
T cd04177 157 IDLVRQI 163 (168)
T ss_pred HHHHHHH
Confidence 9998765
No 107
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=1e-27 Score=165.83 Aligned_cols=153 Identities=22% Similarity=0.238 Sum_probs=119.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
++.+||+++|++|||||||++++.++.+. .+.+|.+.. ...+..++ ..+.+||++|++.+...+..+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999998874 556776633 34455555 6789999999999888888889999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-----HHHHHHhcCcccccCccce-EEEeeccc
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-----PTEIAKVLNLEAMDKTRHW-KIVGCSAY 161 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (185)
++|+|++++.+++.+..|+..+.. ..++|+++|+||+|+.+... ..++... .+. .++++||+
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~---------~~~~~~~~~Sa~ 149 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK---------LGLPPPLHFSSK 149 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHH---------cCCCCCEEEEec
Confidence 999999999999988777765422 23699999999999854321 1122211 122 35899999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 029920 162 TGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~ 178 (185)
+|.|++++|+.+.+.+.
T Consensus 150 ~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 150 LGDSSNELFTKLATAAQ 166 (169)
T ss_pred cCccHHHHHHHHHHHhh
Confidence 99999999999998765
No 108
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.9e-28 Score=170.18 Aligned_cols=160 Identities=21% Similarity=0.246 Sum_probs=116.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|+|||||++++.++.+. .+.++.... ...+..++ +.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~ 80 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFS 80 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEEE
Confidence 58999999999999999999988775 345554422 22344444 567899999999988888889999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccCC
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++++|+.....|...+... .++.|+++++||+|+.+........... ...........+++++||++|
T Consensus 81 ~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 81 VVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 999999998875444444432 4679999999999986542221111101 111111112247999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQDI 177 (185)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (185)
.|++++|+.+++.+
T Consensus 160 ~gi~~~f~~~~~~~ 173 (174)
T cd04135 160 KGLKTVFDEAILAI 173 (174)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 109
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.96 E-value=4.5e-28 Score=174.17 Aligned_cols=155 Identities=17% Similarity=0.195 Sum_probs=116.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhc-CCCEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS--VISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFE-QTDGLVW 89 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~ 89 (185)
+||+++|++|+|||||++++.++.+. .+.++.+ +....+.+ ....+.+|||||++ ......++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence 58999999999999999999877663 4445553 34444555 34789999999998 233344566 8999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+..... +....+. ...+++++++||+++.|+++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a-----~~~~~~~~e~SA~~~~gv~~ 153 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACA-----VVFDCKFIETSAGLQHNVDE 153 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHH-----HHcCCeEEEecCCCCCCHHH
Confidence 99999999999998888877665444579999999999986542211 1111111 11356799999999999999
Q ss_pred HHHHHHHHHh
Q 029920 169 GFDWLVQDIA 178 (185)
Q Consensus 169 l~~~l~~~~~ 178 (185)
+|+++++.+.
T Consensus 154 l~~~l~~~~~ 163 (221)
T cd04148 154 LLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHH
Confidence 9999999885
No 110
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.96 E-value=2e-27 Score=161.95 Aligned_cols=151 Identities=23% Similarity=0.384 Sum_probs=121.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc-ccCcceEEEEE--EE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI-SPTLGFNIKTV--TY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~~~~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|+|||||++++.+..+... .++.+...... .. ....+.+||+||++.+...+..+++++|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 5899999999999999999999888654 56666544433 33 3478999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC--CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN--GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+++++++.....|+..+.... ..+.|+++++||+|+. .....++....... ...+++++||+++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE------NGLLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH------cCCeEEEEecCCCCCHHHH
Confidence 9999989998888777776653 2469999999999995 33333343332221 4678999999999999999
Q ss_pred HHHHH
Q 029920 170 FDWLV 174 (185)
Q Consensus 170 ~~~l~ 174 (185)
+++|.
T Consensus 154 ~~~i~ 158 (159)
T cd00154 154 FQSLA 158 (159)
T ss_pred HHHHh
Confidence 99886
No 111
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=3.4e-28 Score=168.81 Aligned_cols=157 Identities=17% Similarity=0.227 Sum_probs=112.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+|++++|++|+|||||++++.+..+. .+.+|.. .....+..++ ..+.+|||||++.+...+..+++.+|++++|||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d 80 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFS 80 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEEE
Confidence 58999999999999999999877664 3444442 2122334443 688999999999998888889999999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCH---------HHHHHhcCcccccCccceEEEeecccC
Q 029920 93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTP---------TEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
++++++|+.... |+..+... .++.|+++++||+|+...... +.+...............+++++||++
T Consensus 81 ~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~ 158 (173)
T cd04130 81 VVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALT 158 (173)
T ss_pred CCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCC
Confidence 999999998864 55454432 246899999999998643210 000000011111111234899999999
Q ss_pred CCCHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQ 175 (185)
Q Consensus 163 ~~~i~~l~~~l~~ 175 (185)
|.|++++|+.+.-
T Consensus 159 ~~~v~~lf~~~~~ 171 (173)
T cd04130 159 QKNLKEVFDTAIL 171 (173)
T ss_pred CCCHHHHHHHHHh
Confidence 9999999988753
No 112
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.96 E-value=4.5e-27 Score=161.09 Aligned_cols=154 Identities=27% Similarity=0.357 Sum_probs=118.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+||+++|++|+|||||++++.+..+.. ..++.. .....+...+ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 589999999999999999999887753 233332 2233344333 57999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+++++++.....|+..+..... .+.|+++++||+|+.... ..++....... .+.+++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS------VGAKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH------cCCEEEEEeCCCCCCHHHH
Confidence 99999999988888777765533 378999999999986432 22223222211 3567899999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
++++.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998865
No 113
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=3.5e-28 Score=171.36 Aligned_cols=156 Identities=17% Similarity=0.194 Sum_probs=110.2
Q ss_pred eeEEEEEcCCCCChHHHHH-HHhCCCC------cccccCcce-E-EE-----------EEEEcCeEEEEEEcCCchhhHH
Q 029920 16 EMRILMVGLDNSGKTTIVL-KINGEDT------SVISPTLGF-N-IK-----------TVTYQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~-~l~~~~~------~~~~~t~~~-~-~~-----------~~~~~~~~~~~~D~~g~~~~~~ 75 (185)
.+||+++|+.|+|||||+. ++.++.+ ..+.||.+. . .. .+....+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 5655433 244566631 1 11 1122347899999999975 3
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCC----------------HHHH
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALT----------------PTEI 138 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----------------~~~~ 138 (185)
....+++++|++++|||++++.||+.+.. |+..+... .++.|+++|+||+|+.+... ...+
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V 157 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADIL 157 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhcccccccccccCCcc
Confidence 45567899999999999999999999974 66655443 24789999999999854210 0111
Q ss_pred HHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
....+. .++...+++|++|||++|.|++++|+.+++.
T Consensus 158 ~~~e~~-~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 158 PPETGR-AVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CHHHHH-HHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 111111 1222356789999999999999999998864
No 114
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=5.4e-27 Score=162.06 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=120.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...++|+++|++|||||||++++.+..+. ...++.+ +....+.+.+ ..+.+||+||++.+...+..++..+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999876654 3445554 3334455555 56889999999999998899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|+|++++.+++.+..|+..+... ...+.|+++++||+|+.+... ..+....+.. ....+++++||++|.|++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~ 158 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSD-----AQDMYYLETSAKESDNVE 158 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH-----HcCCeEEEeeCCCCCCHH
Confidence 999999999998887776655433 334689999999999864322 1222222221 134679999999999999
Q ss_pred HHHHHHHHHH
Q 029920 168 EGFDWLVQDI 177 (185)
Q Consensus 168 ~l~~~l~~~~ 177 (185)
++|+++.+.+
T Consensus 159 ~l~~~i~~~~ 168 (169)
T cd04114 159 KLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 115
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=9.7e-28 Score=165.26 Aligned_cols=155 Identities=20% Similarity=0.248 Sum_probs=113.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCCEEEEEEe
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~d 92 (185)
||+++|++|+|||||++++....+. .+.++.. .....+..++ +.+++||+||++. .......+++.+|++++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d 80 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYS 80 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEE
Confidence 5899999999999999999887664 3444443 2223334443 5789999999885 34456678899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC-CHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE-GLLE 168 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~ 168 (185)
++++++|+.+..|+..+..... ..+.|+++|+||+|+.... ..++... +. ...+.+++++||++|. |+++
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 81 ITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEK-LA-----SELGCLFFEVSAAEDYDGVHS 154 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHH-HH-----HHcCCEEEEeCCCCCchhHHH
Confidence 9999999998887766655432 4579999999999985432 2222211 11 1134689999999995 9999
Q ss_pred HHHHHHHHHh
Q 029920 169 GFDWLVQDIA 178 (185)
Q Consensus 169 l~~~l~~~~~ 178 (185)
+|+.+++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 116
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.96 E-value=4.4e-27 Score=164.17 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=124.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
.||+++|++|+|||||++++.+..+.. ..++... ....+..++ +.+.+||+||++++...+..++..++++++|+|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 81 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYS 81 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEE
Confidence 689999999999999999999887643 4444432 233344443 567999999999999889999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
+++..+++.+..++..++......+.|+++++||+|+.... ...+..... . ....+++++||+++.|+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~-~-----~~~~~~~~~Sa~~~~gv~~l~ 155 (180)
T cd04137 82 VTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELA-E-----SWGAAFLESSARENENVEEAF 155 (180)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHH-H-----HcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999988886555678999999999986432 221221111 1 134689999999999999999
Q ss_pred HHHHHHHhhh
Q 029920 171 DWLVQDIASR 180 (185)
Q Consensus 171 ~~l~~~~~~~ 180 (185)
+++.+.+...
T Consensus 156 ~~l~~~~~~~ 165 (180)
T cd04137 156 ELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 117
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.95 E-value=6.1e-28 Score=166.99 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=113.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
+||+++|++|||||||+++|.+..+. ...++..... ..... ....+.+||+||++.+......+++.+|++++|||
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d 80 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFS 80 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999988873 3334333211 22222 34679999999999887777788899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH--------HHhcCcccccCccceEEEeecccCCC
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI--------AKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++++++......+...+.. ...+.|+++|+||+|+.+....... ...............+++++||++|.
T Consensus 81 ~~~~~s~~~~~~~~~~~~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 81 VDSPSSFENVKTKWIPEIRH-YCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 99999998877655544443 2237999999999998765433110 01111111112133489999999999
Q ss_pred CHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQ 175 (185)
Q Consensus 165 ~i~~l~~~l~~ 175 (185)
|++++++++.+
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.95 E-value=5.8e-27 Score=160.22 Aligned_cols=154 Identities=22% Similarity=0.332 Sum_probs=120.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc-eEEEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS-VISPTLG-FNIKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~-~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
||+++|++|||||||++++.+..+. ...++.. .....+..+ .+.+.+||+||+..+...+..+++.+|++++|+|.
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 80 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSI 80 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEEC
Confidence 6899999999999999999877653 3344444 222334444 46889999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
++++++.....++..+.......+.|+++++||+|+.... ..++....... ...+++++||+++.|++++++
T Consensus 81 ~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~S~~~~~~i~~l~~ 154 (160)
T cd00876 81 TDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE------WGCPFIETSAKDNINIDEVFK 154 (160)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH------cCCcEEEeccCCCCCHHHHHH
Confidence 9999999999988888776544679999999999986521 22222222211 336899999999999999999
Q ss_pred HHHHHH
Q 029920 172 WLVQDI 177 (185)
Q Consensus 172 ~l~~~~ 177 (185)
+|.+.+
T Consensus 155 ~l~~~i 160 (160)
T cd00876 155 LLVREI 160 (160)
T ss_pred HHHhhC
Confidence 998753
No 119
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=4.4e-27 Score=163.40 Aligned_cols=160 Identities=19% Similarity=0.307 Sum_probs=115.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
.||+++|++|||||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++.+...+..++..+|++++|+|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~ 81 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFS 81 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEE
Confidence 58999999999999999999988775 455665533 23344443 578999999999888887788899999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---------CcccccCccceEEEeecccCC
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---------NLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++++|+.+...|...+.. ...+.|+++|+||+|+.......+..... ...........++++|||++|
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 160 (175)
T cd01870 82 IDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK 160 (175)
T ss_pred CCCHHHHHHHHHHHHHHHHh-hCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence 99999998886543333332 23478999999999986532221111000 000111112347999999999
Q ss_pred CCHHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQDI 177 (185)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (185)
.|++++|+++.+.+
T Consensus 161 ~~v~~lf~~l~~~~ 174 (175)
T cd01870 161 EGVREVFEMATRAA 174 (175)
T ss_pred cCHHHHHHHHHHHh
Confidence 99999999998654
No 120
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-27 Score=159.06 Aligned_cols=177 Identities=36% Similarity=0.686 Sum_probs=157.6
Q ss_pred HHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC--------cccccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920 4 LSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT--------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 75 (185)
.+.+.+....+..+.|+++|..++||||++.++..... +...+|.+.....+..++..+.+||..|++..++
T Consensus 5 ~~gl~~~~~~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrS 84 (197)
T KOG0076|consen 5 MSGLYKYMFKKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRS 84 (197)
T ss_pred HHHHHHHHhhhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHH
Confidence 36667777788999999999999999999988743222 4566888999999999999999999999999999
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI 155 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
+|..|+..+|++|+++|+++++.|+.....++.+.......+.|+++.+||.|+.+..+..++...++........+.++
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076|consen 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCcc
Confidence 99999999999999999999999999999999999887788999999999999999988889988888645555578899
Q ss_pred EeecccCCCCHHHHHHHHHHHHhhh
Q 029920 156 VGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
.++||.+|.|+++-..|++..+.++
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccchhhhcccHHHHHHHHHHHHhhc
Confidence 9999999999999999999998766
No 121
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.95 E-value=2e-26 Score=165.22 Aligned_cols=163 Identities=17% Similarity=0.314 Sum_probs=128.4
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
......+||+++|++|||||||++++..+.+ ..+.+|.+.......+ +.+.+.+|||+|++.+...+..++..++
T Consensus 4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 4466779999999999999999987766555 4677788766555433 3478999999999999888889999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++++|+|++++.++..+..|+..+.... .+.|+++++||+|+.+.....+..... ...++.++++||++|.|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~~~~~~~~~~~~------~~~~~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKDRQVKARQITFH------RKKNLQYYDISAKSNYN 155 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCccccCCHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999999988888776542 478999999999986432222222111 11456799999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
+++.|.+|++.+.++-
T Consensus 156 v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 156 FEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999887643
No 122
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.4e-27 Score=153.85 Aligned_cols=178 Identities=46% Similarity=0.835 Sum_probs=163.0
Q ss_pred ChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhh
Q 029920 2 GLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYF 81 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 81 (185)
|..+.|+....++...++.++|.-|+||||+..++.-...-..-||+++....+.+.+.++++||..|+.+++..|+.|+
T Consensus 4 g~~s~f~~L~g~e~e~rililgldGaGkttIlyrlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy 83 (182)
T KOG0072|consen 4 GFSSLFKALQGPEREMRILILGLDGAGKTTILYRLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYY 83 (182)
T ss_pred hHHHHHHHhcCCccceEEEEeeccCCCeeEEEEEcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHh
Confidence 34588899998889999999999999999999999888888888999999999999999999999999999999999999
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
.+.|++|||+|.+|..........+..++.+....+..++|++||.|........+....++.+.+.. ..+.+|++||.
T Consensus 84 ~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~-r~~~Iv~tSA~ 162 (182)
T KOG0072|consen 84 ADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKD-RIWQIVKTSAV 162 (182)
T ss_pred cccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhh-heeEEEeeccc
Confidence 99999999999999888888888888888887777888999999999988888889988888888777 67999999999
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 029920 162 TGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (185)
+|.|+++..+|+.+.++++
T Consensus 163 kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 163 KGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred cccCCcHHHHHHHHHHhcc
Confidence 9999999999999988764
No 123
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=6.3e-26 Score=156.56 Aligned_cols=153 Identities=15% Similarity=0.170 Sum_probs=106.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhH---------HHHHhhhcCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIR---------SYWRNYFEQT 84 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~~ 84 (185)
++|+++|++|+|||||+++|.+..+... ..|..........++..+++|||||+.... .........+
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLR 80 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhcc
Confidence 4799999999999999999999876421 224444555555667899999999973210 1111112336
Q ss_pred CEEEEEEeCCCcccH--HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 85 DGLVWVVDSSDLRRL--DDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 85 d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
|++++|+|+++..++ +....++..+.... .+.|+++|+||+|+.......+... ......++++++||++
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~~~~------~~~~~~~~~~~~Sa~~ 152 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSEIEE------EEELEGEEVLKISTLT 152 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHHHHH------hhhhccCceEEEEecc
Confidence 899999999986553 55455555543322 3789999999999965433322111 1122467899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQDI 177 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (185)
|.|++++++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~ 167 (168)
T cd01897 153 EEGVDEVKNKACELL 167 (168)
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999998865
No 124
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=1.7e-26 Score=162.22 Aligned_cols=164 Identities=16% Similarity=0.236 Sum_probs=114.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
.||+++|++|+|||||++++....+. ...++.... ...+..++ ..+.+||++|++.+......++..+|++++|+|
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~ 81 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFA 81 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEEE
Confidence 58999999999999999999866554 344444322 22334443 568999999998877666677889999999999
Q ss_pred CCCcccHHHHHH-HHHHHHhccccCCCeEEEEeecCCCCCCCCHH-H------HHHhcCcccccCccceEEEeecccCCC
Q 029920 93 SSDLRRLDDCKM-ELDNLLKEERLSGASLLILANKQDINGALTPT-E------IAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 93 ~~~~~s~~~~~~-~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~------~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
++++++|+.+.. |+..+... .++.|+++|+||+|+....... + ................+++++||++|.
T Consensus 82 i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 82 VDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred CCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 999999999875 55544332 3479999999999984321110 0 000000011111122479999999999
Q ss_pred CHHHHHHHHHHHHhhhcc
Q 029920 165 GLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~~~ 182 (185)
|++++|+++.+.+...++
T Consensus 160 ~v~~~f~~l~~~~~~~~~ 177 (187)
T cd04129 160 GVDDVFEAATRAALLVRK 177 (187)
T ss_pred CHHHHHHHHHHHHhcccC
Confidence 999999999987765443
No 125
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.94 E-value=3.1e-26 Score=147.25 Aligned_cols=177 Identities=46% Similarity=0.825 Sum_probs=160.0
Q ss_pred CChHHHHHHhhc-cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcC-eEEEEEEcCCchhhHHHHH
Q 029920 1 MGLLSIIRKIKK-KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQK-YTLNIWDVGGQRTIRSYWR 78 (185)
Q Consensus 1 ~~~~~~~~~~~~-~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 78 (185)
||+.+++..... ..+.+|+.++|--|+||||++..|.+.......||.++....+.+++ +.+++||.+|+...+..|.
T Consensus 1 mgl~til~~~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWs 80 (185)
T KOG0074|consen 1 MGLETILCCCKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWS 80 (185)
T ss_pred CcHHHHHHHhcCCCcceEEEEEEecCCCcchhHHHHHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhh
Confidence 788888877544 46679999999999999999999999999999999999999999977 8999999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.|+++.|.+|||+|.+|...|++..+.+.+++........|+.+.+||.|+..+...+++...+....+.. ..|++-+|
T Consensus 81 NYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrd-RswhIq~c 159 (185)
T KOG0074|consen 81 NYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRD-RSWHIQEC 159 (185)
T ss_pred hhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhh-ceEEeeeC
Confidence 99999999999999999999999999999998887778899999999999988778888888887777766 78999999
Q ss_pred cccCCCCHHHHHHHHHHHHh
Q 029920 159 SAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (185)
||.++.++.+-.+|+.+...
T Consensus 160 sals~eg~~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 160 SALSLEGSTDGSDWVQSNPE 179 (185)
T ss_pred ccccccCccCcchhhhcCCC
Confidence 99999999998888876543
No 126
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.94 E-value=9.2e-26 Score=155.98 Aligned_cols=155 Identities=25% Similarity=0.214 Sum_probs=108.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRT-------IRSYWRNYFEQTDG 86 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 86 (185)
+|+++|++|||||||+++|.+.... ....|.......+...+. .+.+|||||+.+ +...+...+..+|+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999876542 111233333444555665 999999999632 12222233456999
Q ss_pred EEEEEeCCCc-ccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDL-RRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++ .+++....+...+..... ..++|+++|+||+|+.+.....+....+.. .....+++++||+++.
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLK----ELWGKPVFPISALTGE 157 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHh----hCCCCCEEEEecCCCC
Confidence 9999999998 788887777666654321 236899999999998665443333222211 1024578999999999
Q ss_pred CHHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQD 176 (185)
Q Consensus 165 ~i~~l~~~l~~~ 176 (185)
|++++++++.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998865
No 127
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.1e-27 Score=156.88 Aligned_cols=164 Identities=21% Similarity=0.353 Sum_probs=131.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEE-----------cCeEEEEEEcCCchhhHHHHHh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTY-----------QKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~-----------~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
...++...+|++|+||||++.+...+++. ....|+++.. +.+-+ ..+.+++|||+|+++|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 44578889999999999999999988884 3344555332 22222 1268999999999999999999
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+++.+=++++++|+++..||-+.+.|+.++..+.-+.++-+++++||+|+.+.. .+++....+... ..+.|+|++|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R---~Vs~~qa~~La~-kyglPYfETS 162 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQR---VVSEDQAAALAD-KYGLPYFETS 162 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhh---hhhHHHHHHHHH-HhCCCeeeec
Confidence 999999999999999999999999999998877777788899999999996542 222222222222 3788999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhhc
Q 029920 160 AYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~~ 181 (185)
|-+|.|+++..+.+.+.+.+++
T Consensus 163 A~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 163 ACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred cccCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999988887665
No 128
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.94 E-value=5.3e-26 Score=159.62 Aligned_cols=159 Identities=20% Similarity=0.303 Sum_probs=130.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
...||+++|.+|+|||+|..++.++.+. .+.||++.. .+.+.++ ...+.++||+|++++..+...++...|++++|
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 4689999999999999999999888885 668888743 3334444 46788999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
|+++++.||+.+..++..+.+......+|+++|+||+|+... ...++-.. + +....++|+++||+.+.|+++
T Consensus 82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~-l-----a~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKA-L-----ARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHH-H-----HHhcCCcEEEeeccCCcCHHH
Confidence 999999999999999999966656667899999999999763 22222222 1 222566799999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|..|++.+..
T Consensus 156 ~F~~L~r~~~~ 166 (196)
T KOG0395|consen 156 VFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 129
>PRK15494 era GTPase Era; Provisional
Probab=99.94 E-value=2.9e-25 Score=168.47 Aligned_cols=162 Identities=20% Similarity=0.296 Sum_probs=114.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCchhh-H-------HHHHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQRTI-R-------SYWRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~~~~-~-------~~~~~~~ 81 (185)
.+.++|+++|.+|+|||||+|+|.+..+...++.. ......+..++.++.+|||||.... . .....++
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 45679999999999999999999998886554433 3344456677889999999997432 1 1122346
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
..+|++++|+|..+ ++.....++...+.. .+.|.++|+||+|+.+. ...+....+.. ......++++||+
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~---~~~p~IlViNKiDl~~~-~~~~~~~~l~~----~~~~~~i~~iSAk 199 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRS---LNIVPIFLLNKIDIESK-YLNDIKAFLTE----NHPDSLLFPISAL 199 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHh---cCCCEEEEEEhhcCccc-cHHHHHHHHHh----cCCCcEEEEEecc
Confidence 79999999999765 344443333333332 24677889999998653 23333333321 1123579999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcccCC
Q 029920 162 TGEGLLEGFDWLVQDIASRIYLLD 185 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~~~~~ 185 (185)
+|.|+++++++|.+.+.+.-|++|
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~ 223 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYA 223 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999988777664
No 130
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=1.8e-25 Score=157.95 Aligned_cols=147 Identities=20% Similarity=0.320 Sum_probs=108.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEE-------cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTY-------QKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
+||+++|++|+|||||++++.++.+. .+.+|.+.. .+.+.+ ..+.+.+|||+|++.+..++..+++++|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 58999999999999999999998875 456777633 333444 23689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhcc------------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEE------------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMD 148 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~ 148 (185)
+|+|||+++++||+++..|+..+.... ...+.|+++|+||+|+.+...............++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 999999999999999999988886531 12468999999999986532111111111111222
Q ss_pred CccceEEEeecccCC
Q 029920 149 KTRHWKIVGCSAYTG 163 (185)
Q Consensus 149 ~~~~~~~~~~Sa~~~ 163 (185)
...+.+.+..+++++
T Consensus 161 ~~~~~~~i~~~c~~~ 175 (202)
T cd04102 161 EQGNAEEINLNCTNG 175 (202)
T ss_pred HhcCCceEEEecCCc
Confidence 235556677777654
No 131
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2e-25 Score=164.92 Aligned_cols=157 Identities=18% Similarity=0.132 Sum_probs=108.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE----EEEEEcCeEEEEEEcCCchhh--------HHHHHhhhcCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI----KTVTYQKYTLNIWDVGGQRTI--------RSYWRNYFEQTD 85 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~~d 85 (185)
+|+++|.||+|||||+|+|.+.+....++..+++. .....++.++.++||||.... ......++..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 68999999999999999999988765554333322 223345678999999996432 112345678999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++++|+|+++..+.. ..+...+.. .+.|+++|+||+|+.......+....+.. .....+++++||++|.|
T Consensus 82 vvl~VvD~~~~~~~~---~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~----~~~~~~v~~iSA~~g~g 151 (270)
T TIGR00436 82 LILFVVDSDQWNGDG---EFVLTKLQN---LKRPVVLTRNKLDNKFKDKLLPLIDKYAI----LEDFKDIVPISALTGDN 151 (270)
T ss_pred EEEEEEECCCCCchH---HHHHHHHHh---cCCCEEEEEECeeCCCHHHHHHHHHHHHh----hcCCCceEEEecCCCCC
Confidence 999999999876654 223333332 36899999999998643221111111111 11222789999999999
Q ss_pred HHHHHHHHHHHHhhhcccC
Q 029920 166 LLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~~~~ 184 (185)
++++++++.+.+.+.-|.+
T Consensus 152 i~~L~~~l~~~l~~~~~~~ 170 (270)
T TIGR00436 152 TSFLAAFIEVHLPEGPFRY 170 (270)
T ss_pred HHHHHHHHHHhCCCCCCCC
Confidence 9999999999987765544
No 132
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=4.6e-25 Score=156.94 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=108.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh---------hHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT---------IRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~---------~~~~~~~ 79 (185)
.+..++|+++|++|||||||++++.+.... ...+|.......+...+ ..+.+|||||... +... ..
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 455689999999999999999999987642 22344444444555555 4899999999722 2222 12
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
.+..+|++++|+|++++.++.....+.. .+......+.|+++|+||+|+....... .. .. ....+++++|
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~-~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~-----~~-~~~~~~~~~S 186 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEK-VLKELGAEDIPMILVLNKIDLLDDEELE---ER-----LE-AGRPDAVFIS 186 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHH-HHHHcCcCCCCEEEEEEccccCChHHHH---HH-----hh-cCCCceEEEE
Confidence 3568999999999999877766544333 3333333468999999999986543222 11 11 1456799999
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 029920 160 AYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~ 177 (185)
|+++.|+++++++|.+.+
T Consensus 187 a~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 187 AKTGEGLDELLEAIEELL 204 (204)
T ss_pred cCCCCCHHHHHHHHHhhC
Confidence 999999999999988753
No 133
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.94 E-value=2.4e-25 Score=152.85 Aligned_cols=151 Identities=22% Similarity=0.170 Sum_probs=102.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcc------cccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSV------ISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~------~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.|+++|++|+|||||+++|.+..... ...|.......+.+. +..+.+|||||++.+......++..+|++++|
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V 81 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLV 81 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEEE
Confidence 68999999999999999999753211 122444444455555 77999999999998877777788899999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH----HHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP----TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+++... ......+. .+... ...|+++++||+|+...... .++.+.+... .....+++++||+++.|+
T Consensus 82 ~d~~~~~~-~~~~~~~~-~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Sa~~~~~v 154 (164)
T cd04171 82 VAADEGIM-PQTREHLE-ILELL--GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGT---FLADAPIFPVSAVTGEGI 154 (164)
T ss_pred EECCCCcc-HhHHHHHH-HHHHh--CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhc---CcCCCcEEEEeCCCCcCH
Confidence 99987211 11112122 12211 12489999999998654211 1222222110 013568999999999999
Q ss_pred HHHHHHHHH
Q 029920 167 LEGFDWLVQ 175 (185)
Q Consensus 167 ~~l~~~l~~ 175 (185)
+++++.+.+
T Consensus 155 ~~l~~~l~~ 163 (164)
T cd04171 155 EELKEYLDE 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 134
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=7.4e-25 Score=141.15 Aligned_cols=162 Identities=20% Similarity=0.310 Sum_probs=131.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..+|.+++|+-|+|||+|++.+..+++- ..-+|+++.. +.++. ...++++|||+|+++|+...+.|++++.+.
T Consensus 8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 345789999999999999999999998884 4555666443 34444 447899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
+.|||++.+.++..+..|+.+.... ..++..+++++||.|+... ...++.++.-. .++.-|.++||++|.|
T Consensus 88 lmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~fae------engl~fle~saktg~n 160 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAE------ENGLMFLEASAKTGQN 160 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHh------hcCeEEEEecccccCc
Confidence 9999999999999999998886443 5677889999999998643 23333333222 2788899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
+++.|-...+.+.+++
T Consensus 161 vedafle~akkiyqni 176 (215)
T KOG0097|consen 161 VEDAFLETAKKIYQNI 176 (215)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999988888877654
No 135
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=4.2e-25 Score=152.32 Aligned_cols=155 Identities=21% Similarity=0.176 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.|+++|++|+|||||+++|.+..+... ..+.......+... +..+.+|||||++.+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 589999999999999999998776543 22332333334443 678999999999988888888889999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc---Ccccc-cCccceEEEeecccCCCCHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL---NLEAM-DKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+++....+ ....+..+ . ..++|+++|+||+|+.... .......+ ..... .....++++++||++|.|++
T Consensus 82 d~~~~~~~~-~~~~~~~~-~---~~~~p~ivv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (168)
T cd01887 82 AADDGVMPQ-TIEAIKLA-K---AANVPFIVALNKIDKPNAN-PERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGID 155 (168)
T ss_pred ECCCCccHH-HHHHHHHH-H---HcCCCEEEEEEceeccccc-HHHHHHHHHHhhccccccccCcCcEEEeecccCCCHH
Confidence 998743222 11112222 2 2368999999999986542 22222211 11110 11135689999999999999
Q ss_pred HHHHHHHHHHh
Q 029920 168 EGFDWLVQDIA 178 (185)
Q Consensus 168 ~l~~~l~~~~~ 178 (185)
+++++|.+...
T Consensus 156 ~l~~~l~~~~~ 166 (168)
T cd01887 156 DLLEAILLLAE 166 (168)
T ss_pred HHHHHHHHhhh
Confidence 99999987654
No 136
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=2.1e-26 Score=150.73 Aligned_cols=164 Identities=24% Similarity=0.307 Sum_probs=127.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-cCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-PTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
+.-.||++++|..=+|||+|+-+++.++|...- .|.. +..+.+.+ ....+.+|||+|++.|.++-+.|+++++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 556799999999999999999999998885321 2222 33333333 346899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
++|||++|++||+....|..++.... ...+-+++|+||+|+.+.... ... ..+..+..-+..++++||+.+.||.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~V---t~q-eAe~YAesvGA~y~eTSAk~N~Gi~ 164 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQV---TRQ-EAEAYAESVGALYMETSAKDNVGIS 164 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhh---hHH-HHHHHHHhhchhheecccccccCHH
Confidence 99999999999999999999986653 345889999999998543221 111 1112233356779999999999999
Q ss_pred HHHHHHHHHHhhhc
Q 029920 168 EGFDWLVQDIASRI 181 (185)
Q Consensus 168 ~l~~~l~~~~~~~~ 181 (185)
++|+.+...+.+..
T Consensus 165 elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 165 ELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998876654
No 137
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=8.8e-25 Score=164.92 Aligned_cols=159 Identities=24% Similarity=0.233 Sum_probs=115.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEE-cCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTY-QKYTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
..|+++|.||||||||+++|.+.... ....|.......+.+ +...+.+||+||..+ +...+..+++.++
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~ 238 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 238 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcC
Confidence 47999999999999999999976542 123455555666666 557899999999632 3344555678899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCCHHH-HHHhcCcccccCccceEEEeecccCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALTPTE-IAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++|+|+++.++++....|...+..+.. ..++|+++|+||+|+.......+ ....+ .. ...++++++||+++
T Consensus 239 vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~----~~-~~~~~i~~iSAktg 313 (335)
T PRK12299 239 LLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALE----LA-ALGGPVFLISAVTG 313 (335)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHH----HH-hcCCCEEEEEcCCC
Confidence 99999999987778877777666654422 24689999999999865432221 11111 11 13467999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|+++++++|.+.+.+.
T Consensus 314 ~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 314 EGLDELLRALWELLEEA 330 (335)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999988654
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=4e-25 Score=154.08 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=104.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC--------ccccc------CcceEEE----EE-----EEcCeEEEEEEcCCchhhH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT--------SVISP------TLGFNIK----TV-----TYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~--------~~~~~------t~~~~~~----~~-----~~~~~~~~~~D~~g~~~~~ 74 (185)
+|+++|++|+|||||+++|.+... ..+.+ +.+.+.. .+ ...+..+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 689999999999999999986421 11111 1122211 12 2245789999999999999
Q ss_pred HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceE
Q 029920 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK 154 (185)
Q Consensus 75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+..++..+|++++|+|+++..++.....+. .... .++|+++|+||+|+.+... .+....+... . ......
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~-~~~~----~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~-~-~~~~~~ 153 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFY-LALE----NNLEIIPVINKIDLPSADP-ERVKQQIEDV-L-GLDPSE 153 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHH-HHHH----cCCCEEEEEECCCCCcCCH-HHHHHHHHHH-h-CCCccc
Confidence 99999999999999999999876655443332 2222 3689999999999865322 2111112111 0 102235
Q ss_pred EEeecccCCCCHHHHHHHHHHHH
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
++++||++|.|++++++++.+.+
T Consensus 154 ~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 154 AILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred EEEeeccCCCCHHHHHHHHHhhC
Confidence 89999999999999999998765
No 139
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=1.2e-24 Score=165.44 Aligned_cols=151 Identities=24% Similarity=0.257 Sum_probs=110.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEE-cCeEEEEEEcCCc---------hhhHHHHHhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTY-QKYTLNIWDVGGQ---------RTIRSYWRNY 80 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~~~ 80 (185)
...++|+++|.+|+|||||+|+|++.... ....|..+....+.+ ++..+.+|||||. +.+.... ..
T Consensus 187 ~~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 187 ADVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 45699999999999999999999997642 335666677777777 5689999999997 2233322 24
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+..+|++++|+|++++.+++....+ ..++......+.|+++|+||+|+.+.. +...... ...+++++||
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~-~~~L~~l~~~~~piIlV~NK~Dl~~~~---~v~~~~~-------~~~~~i~iSA 334 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAV-EKVLEELGAEDIPQLLVYNKIDLLDEP---RIERLEE-------GYPEAVFVSA 334 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHH-HHHHHHhccCCCCEEEEEEeecCCChH---hHHHHHh-------CCCCEEEEEc
Confidence 6789999999999998776655433 334444334478999999999986532 2211111 1235899999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLVQD 176 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (185)
++|.|+++++++|.+.
T Consensus 335 ktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 335 KTGEGLDLLLEAIAER 350 (351)
T ss_pred cCCCCHHHHHHHHHhh
Confidence 9999999999998764
No 140
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.93 E-value=9.1e-26 Score=151.79 Aligned_cols=145 Identities=25% Similarity=0.272 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh------hHHHHHhhh--cCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT------IRSYWRNYF--EQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~------~~~~~~~~~--~~~d 85 (185)
++|+++|.||||||||+|+|+|.+.. ..+.|.......+.+.+..+.++|+||..+ .......++ +..|
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D 80 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPD 80 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCC
Confidence 68999999999999999999999853 233455566667788899999999999322 123334443 6899
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++++|+|+++. +.......++++. ++|+++++||+|........-..+.+. ...++|++++||+++.|
T Consensus 81 ~ii~VvDa~~l---~r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~id~~~Ls-----~~Lg~pvi~~sa~~~~g 148 (156)
T PF02421_consen 81 LIIVVVDATNL---ERNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEIDAEKLS-----ERLGVPVIPVSARTGEG 148 (156)
T ss_dssp EEEEEEEGGGH---HHHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE-HHHHH-----HHHTS-EEEEBTTTTBT
T ss_pred EEEEECCCCCH---HHHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEECHHHHH-----HHhCCCEEEEEeCCCcC
Confidence 99999999873 3333334444433 799999999999754433211111111 12467899999999999
Q ss_pred HHHHHHHH
Q 029920 166 LLEGFDWL 173 (185)
Q Consensus 166 i~~l~~~l 173 (185)
++++++.|
T Consensus 149 ~~~L~~~I 156 (156)
T PF02421_consen 149 IDELKDAI 156 (156)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhhC
Confidence 99998865
No 141
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.93 E-value=9.1e-27 Score=148.42 Aligned_cols=155 Identities=21% Similarity=0.373 Sum_probs=121.6
Q ss_pred EEEcCCCCChHHHHHHHhCCCCc--ccccCcceEEE--EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 20 LMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNIK--TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 20 ~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
+++|++++|||+|+-++..+.+- ...+|.++..+ .+..+ .+++++|||+|+++|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999998887776663 23355554333 33443 47899999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
.+..||+++..|+.++.++ ......+++++||||+..+ ....+.-+.+ ++..++||+++||++|.|++-.|-.
T Consensus 81 ankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kl-----a~~y~ipfmetsaktg~nvd~af~~ 154 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKL-----AEAYGIPFMETSAKTGFNVDLAFLA 154 (192)
T ss_pred ccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHH-----HHHHCCCceeccccccccHhHHHHH
Confidence 9999999999999998777 4445789999999998542 2222222222 2226789999999999999999999
Q ss_pred HHHHHhhh
Q 029920 173 LVQDIASR 180 (185)
Q Consensus 173 l~~~~~~~ 180 (185)
|.+.+.+.
T Consensus 155 ia~~l~k~ 162 (192)
T KOG0083|consen 155 IAEELKKL 162 (192)
T ss_pred HHHHHHHh
Confidence 99887654
No 142
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=1.6e-24 Score=152.01 Aligned_cols=156 Identities=22% Similarity=0.254 Sum_probs=112.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccc-------------------cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVIS-------------------PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~-------------------~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 78 (185)
+|+++|.+|+|||||+++|.+....... .+.......+...+..+.++||||...+...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 4899999999999999999877664321 122233444566778999999999998888888
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccc-------
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAM------- 147 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~------- 147 (185)
.++..+|++++|+|+.++.+... ...+... . ..+.|+++++||+|+........ +...+.....
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~-~---~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQT-REHLRIA-R---EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEG 155 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHH-HHHHHHH-H---HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhh
Confidence 99999999999999987654332 2222222 2 24799999999999976433222 2233322111
Q ss_pred -cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 148 -DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 148 -~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
......+++++||++|.|++++++++.+.+.
T Consensus 156 ~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 156 TRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred cccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 0124678999999999999999999988764
No 143
>COG1159 Era GTPase [General function prediction only]
Probab=99.93 E-value=9.6e-25 Score=157.72 Aligned_cols=163 Identities=19% Similarity=0.218 Sum_probs=119.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hHHHHHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IRSYWRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 81 (185)
.+.-.|+++|.||+|||||+|++.|.+.+..++...++... +..++.++.++||||... +.......+
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 34557999999999999999999999999888866655544 345789999999999433 233344557
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
..+|+++||+|+.++-. ....++.+.++. .+.|+++++||+|...... .....+.+... . ....++++||
T Consensus 84 ~dvDlilfvvd~~~~~~--~~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~-~---~f~~ivpiSA 154 (298)
T COG1159 84 KDVDLILFVVDADEGWG--PGDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKL-L---PFKEIVPISA 154 (298)
T ss_pred ccCcEEEEEEeccccCC--ccHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhh-C---CcceEEEeec
Confidence 88999999999997322 222333333332 3689999999999876644 23333333221 1 3336899999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcccCC
Q 029920 161 YTGEGLLEGFDWLVQDIASRIYLLD 185 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~~ 185 (185)
++|.|++.+.+.+...+.+.-+.+|
T Consensus 155 ~~g~n~~~L~~~i~~~Lpeg~~~yp 179 (298)
T COG1159 155 LKGDNVDTLLEIIKEYLPEGPWYYP 179 (298)
T ss_pred cccCCHHHHHHHHHHhCCCCCCcCC
Confidence 9999999999999999988877764
No 144
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.93 E-value=3e-24 Score=169.74 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=112.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCch----------hhHHH-HH
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQR----------TIRSY-WR 78 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~----------~~~~~-~~ 78 (185)
...++|+++|.+|+|||||+|+|++......++..+ .....+.+++..+.+|||||.. .+... ..
T Consensus 209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~ 288 (472)
T PRK03003 209 GGPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH 288 (472)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence 346899999999999999999999987643333333 3344566788889999999952 22222 23
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+++.+|++++|+|++++.+++... ++..+.. .++|+++|+||+|+.+............. .+......+++++
T Consensus 289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~-~l~~~~~~~~~~~ 362 (472)
T PRK03003 289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDR-ELAQVPWAPRVNI 362 (472)
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHH-hcccCCCCCEEEE
Confidence 4578999999999999987777653 2333322 47999999999999754322222222211 1112234678999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|++++|+.+.+.+.+
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~ 383 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALES 383 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999987753
No 145
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.93 E-value=3.4e-24 Score=161.62 Aligned_cols=156 Identities=25% Similarity=0.275 Sum_probs=112.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
..|+++|.||+|||||+++|.+.... ....|.......+.+++ ..+.++|+||..+ +...+..+++.++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad 237 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTR 237 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHhhC
Confidence 57999999999999999999986542 12335555566667766 8999999999642 3334445567899
Q ss_pred EEEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 86 GLVWVVDSSDL---RRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 86 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
++++|+|+++. ++++....+..++..+. ...++|+++|+||+|+.......+..+.+.. ..+.+++++||+
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~-----~~~~~vi~iSAk 312 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKK-----ALGKPVFPISAL 312 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHH-----HcCCcEEEEEcc
Confidence 99999999976 56666655555554332 2347899999999999765333333332221 124579999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029920 162 TGEGLLEGFDWLVQDI 177 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~ 177 (185)
++.|+++++++|.+.+
T Consensus 313 tg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 313 TGEGLDELLYALAELL 328 (329)
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999998765
No 146
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.92 E-value=9.3e-25 Score=146.81 Aligned_cols=134 Identities=20% Similarity=0.184 Sum_probs=91.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch-----hhHHHHHhhhcCCCEEEEEEe
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR-----TIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~i~v~d 92 (185)
||+++|++|+|||||+++|.+..+. +.+|.+. .+.. .+|||||.. .+.... ..++++|++++|+|
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~-~~~t~~~-----~~~~---~~iDt~G~~~~~~~~~~~~~-~~~~~ad~vilv~d 71 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL-YKKTQAV-----EYND---GAIDTPGEYVENRRLYSALI-VTAADADVIALVQS 71 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc-cccceeE-----EEcC---eeecCchhhhhhHHHHHHHH-HHhhcCCEEEEEec
Confidence 7999999999999999999988653 2233322 2222 689999973 233333 34789999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
++++.++... .+ ... . ..|+++|+||+|+.+.. ..++....... ....+++++||++|.|++++|+
T Consensus 72 ~~~~~s~~~~-~~-~~~---~---~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~ 138 (142)
T TIGR02528 72 ATDPESRFPP-GF-ASI---F---VKPVIGLVTKIDLAEADVDIERAKELLET-----AGAEPIFEISSVDEQGLEALVD 138 (142)
T ss_pred CCCCCcCCCh-hH-HHh---c---cCCeEEEEEeeccCCcccCHHHHHHHHHH-----cCCCcEEEEecCCCCCHHHHHH
Confidence 9998887542 22 221 1 24999999999986432 22222221111 0223789999999999999999
Q ss_pred HHH
Q 029920 172 WLV 174 (185)
Q Consensus 172 ~l~ 174 (185)
++.
T Consensus 139 ~l~ 141 (142)
T TIGR02528 139 YLN 141 (142)
T ss_pred HHh
Confidence 874
No 147
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=1.1e-24 Score=154.66 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=100.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE--EEEEEcCeEEEEEEcCC-----------chhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI--KTVTYQKYTLNIWDVGG-----------QRTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~ 79 (185)
+...++|+++|.+|+|||||+++|.+..+. .....+.+. ..+..+ .+.+||||| ++.++..+..
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VGKRPGVTRKPNHYDWG--DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCceeeCceEEeec--ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 445789999999999999999999987754 222223332 223333 689999999 4555555555
Q ss_pred hhc----CCCEEEEEEeCCCcccH-HH--------HHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCc
Q 029920 80 YFE----QTDGLVWVVDSSDLRRL-DD--------CKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNL 144 (185)
Q Consensus 80 ~~~----~~d~~i~v~d~~~~~s~-~~--------~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~ 144 (185)
++. .++++++|+|.++.... +. ....+...+. ..++|+++|+||+|+.... ...++...++.
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~ 159 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNRDEVLDEIAERLGL 159 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcHHHHHHHHHHHhcC
Confidence 543 45788889988653221 00 0111122222 2379999999999986543 12223333321
Q ss_pred ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.........+++++||++| |+++++++|.+.+.+
T Consensus 160 ~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 160 YPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 1000001236899999999 999999999998755
No 148
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1.4e-23 Score=142.76 Aligned_cols=153 Identities=22% Similarity=0.346 Sum_probs=112.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.+||+++|++|+|||||++++.+.... ...++.+ .....+..++ ..+.+||+||+..+...+..+++.++.++.+
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~ 80 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV 80 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence 479999999999999999999988753 2333333 3333355666 7899999999999988888889999999999
Q ss_pred EeCCCc-ccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDL-RRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|.... .++.... .+...+.... ..+.|+++++||+|+............+.. ....+++++||+++.|+++
T Consensus 81 ~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~sa~~~~gv~~ 154 (161)
T TIGR00231 81 FDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAKLKTHVAFLFAK-----LNGEPIIPLSAETGKNIDS 154 (161)
T ss_pred EEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcchhhHHHHHHHhh-----ccCCceEEeecCCCCCHHH
Confidence 998876 5665555 4444443332 227899999999999764323333332222 1345699999999999999
Q ss_pred HHHHHH
Q 029920 169 GFDWLV 174 (185)
Q Consensus 169 l~~~l~ 174 (185)
++++|.
T Consensus 155 ~~~~l~ 160 (161)
T TIGR00231 155 AFKIVE 160 (161)
T ss_pred HHHHhh
Confidence 998863
No 149
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=9.9e-24 Score=143.70 Aligned_cols=143 Identities=22% Similarity=0.293 Sum_probs=105.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH--------HHHhhhcCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS--------YWRNYFEQT 84 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~ 84 (185)
++|+++|++|+|||||++++.+.......+ +.......+..++..+.+|||||...... ....++..+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 81 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEEA 81 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhC
Confidence 589999999999999999999886533222 22233445566778999999999654321 233456789
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
|++++|+|++++.+......+.. ..+.|+++|+||+|+.+.... .......+++++||+++.
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-----------~~~~~~~~~~~~Sa~~~~ 143 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-----------LSLLAGKPIIAISAKTGE 143 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-----------ccccCCCceEEEECCCCC
Confidence 99999999998777665433222 347999999999998765333 112245689999999999
Q ss_pred CHHHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQDI 177 (185)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (185)
|+++++++|.+.+
T Consensus 144 ~v~~l~~~l~~~~ 156 (157)
T cd04164 144 GLDELKEALLELA 156 (157)
T ss_pred CHHHHHHHHHHhh
Confidence 9999999988764
No 150
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=7.9e-24 Score=167.33 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=109.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchh--------hHHHHHhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRT--------IRSYWRNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 80 (185)
..+.++|+++|.+|+|||||+|+|.+.......++.+.+ ...+.+++..+.+|||||.+. +......+
T Consensus 35 ~~~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 35 GGPLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 345689999999999999999999998765555544433 334566788899999999752 34455667
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|+++..++.. ..+...+.. .++|+++|+||+|+..... +..+.... . .. .++++||
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~---~~~piilV~NK~Dl~~~~~--~~~~~~~~-g----~~-~~~~iSA 181 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR---SGKPVILAANKVDDERGEA--DAAALWSL-G----LG-EPHPVSA 181 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCCccch--hhHHHHhc-C----CC-CeEEEEc
Confidence 889999999999998765432 222333332 3799999999999864321 11111111 1 11 2468999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++|.|++++++++++.+.+
T Consensus 182 ~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 182 LHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CCCCCcHHHHHHHHhhccc
Confidence 9999999999999988754
No 151
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=9.2e-24 Score=165.72 Aligned_cols=159 Identities=23% Similarity=0.219 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce----EEEEEEEcCeEEEEEEcCCchhhHH-----------HHHh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF----NIKTVTYQKYTLNIWDVGGQRTIRS-----------YWRN 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 79 (185)
..++|+++|.+|+|||||+++|++.......+..++ ....+..++..+.+|||||...... ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~ 250 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLK 250 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHH
Confidence 458999999999999999999998775443333333 2334556778999999999643321 1234
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEEEee
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+++.+|++++|+|++++.+.... ..+... ...+.|+++|+||+|+. +....++....+.. .+......+++++
T Consensus 251 ~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~----~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~vi~~ 324 (429)
T TIGR03594 251 AIERADVVLLVLDATEGITEQDL-RIAGLI----LEAGKALVIVVNKWDLVKDEKTREEFKKELRR-KLPFLDFAPIVFI 324 (429)
T ss_pred HHHhCCEEEEEEECCCCccHHHH-HHHHHH----HHcCCcEEEEEECcccCCCHHHHHHHHHHHHH-hcccCCCCceEEE
Confidence 67899999999999987665543 222222 22378999999999997 22222233333322 2222245789999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|++++++++.+...+
T Consensus 325 SA~~g~~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 325 SALTGQGVDKLLDAIDEVYEN 345 (429)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999887653
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=4.6e-24 Score=148.13 Aligned_cols=152 Identities=23% Similarity=0.226 Sum_probs=105.6
Q ss_pred EEcCCCCChHHHHHHHhCCCC--cc-cccCcceEEEEEEEc-CeEEEEEEcCCchhh-------HHHHHhhhcCCCEEEE
Q 029920 21 MVGLDNSGKTTIVLKINGEDT--SV-ISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTI-------RSYWRNYFEQTDGLVW 89 (185)
Q Consensus 21 v~G~~~~GKttli~~l~~~~~--~~-~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~~i~ 89 (185)
++|++|+|||||+++|.+... .. ...|.......+.++ +..+.+|||||.... ......++..+|++++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 589999999999999999864 11 223334444456667 889999999996321 1123445678999999
Q ss_pred EEeCCCc------ccHHHHHHHHHHHHhccc------cCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920 90 VVDSSDL------RRLDDCKMELDNLLKEER------LSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 90 v~d~~~~------~s~~~~~~~~~~~~~~~~------~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|+|++++ .++.....+...+..... ..+.|+++|+||+|+.......+.. .. ........++++
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~---~~-~~~~~~~~~~~~ 156 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEEL---VR-ELALEEGAEVVP 156 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHH---HH-HHhcCCCCCEEE
Confidence 9999987 466666555555543322 2479999999999997653333321 00 111114567999
Q ss_pred ecccCCCCHHHHHHHHHHH
Q 029920 158 CSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~ 176 (185)
+||+++.|++++++++...
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998764
No 153
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=6.4e-24 Score=149.73 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC----C--c----ccccCcceEEEEEEEc--------------CeEEEEEEcCCchh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGED----T--S----VISPTLGFNIKTVTYQ--------------KYTLNIWDVGGQRT 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~----~--~----~~~~t~~~~~~~~~~~--------------~~~~~~~D~~g~~~ 72 (185)
++|+++|++|+|||||+++|++.. + . ....|.+.....+.+. +..+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1 1 1123333333333333 67999999999977
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccc-
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAM- 147 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~- 147 (185)
+..........+|++++|+|+.+......... +. +... .+.|+++++||+|+........ +...+.....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~-~~-~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 155 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAEC-LV-IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEK 155 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHH-HH-HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 65555555677899999999987543332211 11 1111 2579999999999864433222 1221111100
Q ss_pred cCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.....++++++||++|.|++++++++.+.+..
T Consensus 156 ~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 156 TRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred cCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 01146789999999999999999999988753
No 154
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.92 E-value=1.9e-23 Score=147.53 Aligned_cols=159 Identities=21% Similarity=0.247 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhC--CCCccc-------------ccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHHH
Q 029920 17 MRILMVGLDNSGKTTIVLKING--EDTSVI-------------SPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSYW 77 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~--~~~~~~-------------~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 77 (185)
.+|+++|++|+|||||+++|.+ ..+... ..+.+ .....+..++..+.+|||||++.+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999986 333211 11122 2233456678899999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCc-ccccCccce
Q 029920 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNL-EAMDKTRHW 153 (185)
Q Consensus 78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~-~~~~~~~~~ 153 (185)
..+++.+|++++|+|+++.. +.....++..... .++|+++++||+|+....... ++...+.. .......++
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 99999999999999998732 2333333333322 368999999999996543221 22222211 001112467
Q ss_pred EEEeecccCCCCHHHH------HHHHHHHHhhh
Q 029920 154 KIVGCSAYTGEGLLEG------FDWLVQDIASR 180 (185)
Q Consensus 154 ~~~~~Sa~~~~~i~~l------~~~l~~~~~~~ 180 (185)
+++++||++|.|++++ +++|.+.+.+.
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~ 190 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEH 190 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhc
Confidence 8999999999877443 44455554443
No 155
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=7.6e-24 Score=148.83 Aligned_cols=158 Identities=22% Similarity=0.251 Sum_probs=112.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---------------------ccccCcceEEEEEE--EcCeEEEEEEcCCch
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---------------------VISPTLGFNIKTVT--YQKYTLNIWDVGGQR 71 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---------------------~~~~t~~~~~~~~~--~~~~~~~~~D~~g~~ 71 (185)
+.++|+++|+.++|||||+++|.+.... ...-|.......+. ..+..+.++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 5689999999999999999998643311 11235556666777 788999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc----c
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA----M 147 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~----~ 147 (185)
.+.......+..+|++++|+|+.+.-.. .....+... ...++|+++++||+|+... ...+....+.... .
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~----~~~~~p~ivvlNK~D~~~~-~~~~~~~~~~~~l~~~~~ 155 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKIL----RELGIPIIVVLNKMDLIEK-ELEEIIEEIKEKLLKEYG 155 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHH----HHTT-SEEEEEETCTSSHH-HHHHHHHHHHHHHHHHTT
T ss_pred ceeecccceecccccceeeeeccccccc-ccccccccc----cccccceEEeeeeccchhh-hHHHHHHHHHHHhccccc
Confidence 9998888889999999999999975332 223333333 2237889999999999722 2222222111111 1
Q ss_pred cC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 148 DK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 148 ~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.. ...+|++++||.+|.|+++|++.|.+.+.
T Consensus 156 ~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 156 ENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp STTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred cCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 11 13689999999999999999999988764
No 156
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.92 E-value=8.5e-24 Score=144.35 Aligned_cols=145 Identities=25% Similarity=0.224 Sum_probs=101.8
Q ss_pred EEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--cCCCEEEE
Q 029920 21 MVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--EQTDGLVW 89 (185)
Q Consensus 21 v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~~d~~i~ 89 (185)
++|.+|+|||||++++.+..... ...|.......+.+++..+.+|||||+..+.. .+..++ +.+|++++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~ 80 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVN 80 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEE
Confidence 58999999999999999875321 12244445556777788999999999876543 345555 48999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+|+.++++.. .++..+.. .++|+++|+||+|+.+..........+ ....+.+++++||+++.|++++
T Consensus 81 v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~iSa~~~~~~~~l 148 (158)
T cd01879 81 VVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKIDLDKL-----SELLGVPVVPTSARKGEGIDEL 148 (158)
T ss_pred EeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhhHHHH-----HHhhCCCeEEEEccCCCCHHHH
Confidence 99998864432 22333222 268999999999986543322222211 1113467999999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
++++.+..
T Consensus 149 ~~~l~~~~ 156 (158)
T cd01879 149 KDAIAELA 156 (158)
T ss_pred HHHHHHHh
Confidence 99988764
No 157
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.92 E-value=9.9e-24 Score=142.24 Aligned_cols=150 Identities=27% Similarity=0.372 Sum_probs=112.2
Q ss_pred EEcCCCCChHHHHHHHhCCCC-c-ccccCcceEEEEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920 21 MVGLDNSGKTTIVLKINGEDT-S-VISPTLGFNIKTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 21 v~G~~~~GKttli~~l~~~~~-~-~~~~t~~~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
++|++|+|||||++++.+... . ...++. ......... +..+.+||+||..........+++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 579999999999999998877 2 333333 333333333 678999999999888888788899999999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920 95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (185)
++.++.....++..........+.|+++++||+|+............. ........+++++|+.++.|+++++++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~---~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAE---QLAKELGVPYFETSAKTGENVEELFEELA 156 (157)
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHH---HHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence 988888877764444444455689999999999987654443321000 11112567899999999999999999875
No 158
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=1.8e-23 Score=163.91 Aligned_cols=147 Identities=21% Similarity=0.344 Sum_probs=110.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhHHH--------HHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY--------WRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 81 (185)
...++|+++|.+|+|||||+|+|++......+ .|..+....+.+++..+.+|||||....... ...++
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~ 292 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI 292 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence 45689999999999999999999987653333 2444445567778899999999997654321 23467
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
..+|++++|+|++++.+++.... +.. ..+.|+++|+||+|+.+..... .....+++++||+
T Consensus 293 ~~aD~il~VvD~s~~~s~~~~~~-l~~------~~~~piiiV~NK~DL~~~~~~~------------~~~~~~~i~iSAk 353 (449)
T PRK05291 293 EEADLVLLVLDASEPLTEEDDEI-LEE------LKDKPVIVVLNKADLTGEIDLE------------EENGKPVIRISAK 353 (449)
T ss_pred HhCCEEEEEecCCCCCChhHHHH-HHh------cCCCCcEEEEEhhhccccchhh------------hccCCceEEEEee
Confidence 88999999999999877664322 222 3468999999999996542221 1134578999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 029920 162 TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (185)
+|.|+++++++|.+.+..
T Consensus 354 tg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 354 TGEGIDELREAIKELAFG 371 (449)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998754
No 159
>PRK00089 era GTPase Era; Reviewed
Probab=99.91 E-value=1.6e-23 Score=156.65 Aligned_cols=162 Identities=20% Similarity=0.197 Sum_probs=111.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCchhh--------HHHHHhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQRTI--------RSYWRNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~ 82 (185)
+.-.|+++|++|||||||+|+|.+.+....++...++.. ....++.++.++||||.... .......+.
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~ 83 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLK 83 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHh
Confidence 345699999999999999999999887655544433222 22335579999999996432 223344678
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
.+|++++|+|++++ +.....++...+.. .+.|+++|+||+|+... ....+....+.. .....+++++||+
T Consensus 84 ~~D~il~vvd~~~~--~~~~~~~i~~~l~~---~~~pvilVlNKiDl~~~~~~l~~~~~~l~~----~~~~~~i~~iSA~ 154 (292)
T PRK00089 84 DVDLVLFVVDADEK--IGPGDEFILEKLKK---VKTPVILVLNKIDLVKDKEELLPLLEELSE----LMDFAEIVPISAL 154 (292)
T ss_pred cCCEEEEEEeCCCC--CChhHHHHHHHHhh---cCCCEEEEEECCcCCCCHHHHHHHHHHHHh----hCCCCeEEEecCC
Confidence 89999999999883 22222333333332 36899999999999732 222233322221 1134578999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcccCC
Q 029920 162 TGEGLLEGFDWLVQDIASRIYLLD 185 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~~~~~ 185 (185)
++.|++++++++.+.+.+.-+.+|
T Consensus 155 ~~~gv~~L~~~L~~~l~~~~~~y~ 178 (292)
T PRK00089 155 KGDNVDELLDVIAKYLPEGPPYYP 178 (292)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCCC
Confidence 999999999999999877655543
No 160
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=5e-23 Score=142.33 Aligned_cols=155 Identities=25% Similarity=0.246 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhh----------H-HHHHhh
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTI----------R-SYWRNY 80 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~----------~-~~~~~~ 80 (185)
+++|+++|++|+|||||++++.+........ +.......+..++..+.+|||||.... . .....+
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~ 81 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKA 81 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHH
Confidence 5899999999999999999999876432222 222223345567778999999996432 1 112335
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEee
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+..+|++++|+|+.++.+.... ..+... ...+.|+++++||+|+.+. .........+... +......+++++
T Consensus 82 ~~~~d~vi~v~d~~~~~~~~~~-~~~~~~----~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 155 (174)
T cd01895 82 IERADVVLLVIDATEGITEQDL-RIAGLI----LEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRK-LPFLDYAPIVFI 155 (174)
T ss_pred HhhcCeEEEEEeCCCCcchhHH-HHHHHH----HhcCCCEEEEEeccccCCccHHHHHHHHHHHHhh-cccccCCceEEE
Confidence 6789999999999987665442 222222 2236899999999998765 2233333333221 111134679999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 029920 159 SAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (185)
||+++.|++++++++.+.
T Consensus 156 Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 156 SALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eccCCCCHHHHHHHHHHh
Confidence 999999999999998764
No 161
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=9.3e-23 Score=159.19 Aligned_cols=151 Identities=19% Similarity=0.235 Sum_probs=110.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH--------HHhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY--------WRNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 80 (185)
....++|+++|++|+|||||+|+|++......++..+ .....+.+++..+.+|||||....... ...+
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4567899999999999999999999876544433333 334456778899999999998544321 2456
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|++++.+++.. ++.... ..+.|+++|+||+|+... ...... ...+.+++.+||
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~----~~~~piIlV~NK~Dl~~~-~~~~~~---------~~~~~~~~~vSa 343 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLN----KSKKPFILVLNKIDLKIN-SLEFFV---------SSKVLNSSNLSA 343 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHh----hCCCCEEEEEECccCCCc-chhhhh---------hhcCCceEEEEE
Confidence 7899999999999998777654 444432 236899999999998643 111111 113456899999
Q ss_pred cCCCCHHHHHHHHHHHHhhh
Q 029920 161 YTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~ 180 (185)
++ .|++++++.+.+.+.+.
T Consensus 344 k~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 344 KQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred ec-CCHHHHHHHHHHHHHHH
Confidence 98 69999999998887654
No 162
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.91 E-value=1.3e-22 Score=144.09 Aligned_cols=158 Identities=23% Similarity=0.325 Sum_probs=115.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCC-CEEEEEEe
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQT-DGLVWVVD 92 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~d 92 (185)
+|+++|++|||||||+++|.+..+....++.......... .+..+.+||+||+..++..+..+++.+ +++|+|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD 81 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVD 81 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEE
Confidence 6899999999999999999988775544433333333322 357899999999999999888899998 99999999
Q ss_pred CCCc-ccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcCc-------------------------
Q 029920 93 SSDL-RRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLNL------------------------- 144 (185)
Q Consensus 93 ~~~~-~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~------------------------- 144 (185)
+.+. .++.....++..++.... ..++|+++++||+|+........+...+..
T Consensus 82 ~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~~~ 161 (203)
T cd04105 82 SATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSKES 161 (203)
T ss_pred CccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccccc
Confidence 9987 678888887777655322 257999999999998765443322211100
Q ss_pred ---------ccccCccceEEEeecccCCC-CHHHHHHHHHH
Q 029920 145 ---------EAMDKTRHWKIVGCSAYTGE-GLLEGFDWLVQ 175 (185)
Q Consensus 145 ---------~~~~~~~~~~~~~~Sa~~~~-~i~~l~~~l~~ 175 (185)
........+.++++|++.+. +++.+.+||.+
T Consensus 162 ~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 162 LGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 00001235678999998876 69999999864
No 163
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=4.8e-23 Score=140.35 Aligned_cols=145 Identities=20% Similarity=0.227 Sum_probs=100.4
Q ss_pred EEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH--------HHHhhhcCCCEE
Q 029920 20 LMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS--------YWRNYFEQTDGL 87 (185)
Q Consensus 20 ~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d~~ 87 (185)
+++|.+|+|||||+++|.+.......+ |...........+..+.+|||||...... ....+++.+|++
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 478999999999999999876432222 22233445566778999999999876433 344567889999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
++|+|..++.+.... .+...+.. .+.|+++|+||+|+...... ...+... ...+++++|++++.|++
T Consensus 81 i~v~d~~~~~~~~~~--~~~~~~~~---~~~piiiv~nK~D~~~~~~~---~~~~~~~-----~~~~~~~~Sa~~~~gv~ 147 (157)
T cd01894 81 LFVVDGREGLTPADE--EIAKYLRK---SKKPVILVVNKVDNIKEEDE---AAEFYSL-----GFGEPIPISAEHGRGIG 147 (157)
T ss_pred EEEEeccccCCccHH--HHHHHHHh---cCCCEEEEEECcccCChHHH---HHHHHhc-----CCCCeEEEecccCCCHH
Confidence 999999875443331 22233332 25999999999998765322 1111110 11257999999999999
Q ss_pred HHHHHHHHHH
Q 029920 168 EGFDWLVQDI 177 (185)
Q Consensus 168 ~l~~~l~~~~ 177 (185)
++++++.+.+
T Consensus 148 ~l~~~l~~~~ 157 (157)
T cd01894 148 DLLDAILELL 157 (157)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 164
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=7e-23 Score=160.24 Aligned_cols=159 Identities=25% Similarity=0.277 Sum_probs=109.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
...|+++|.||+|||||+|+|.+..... ...|.......+...+..+.++|+||..+ .......+++.||
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhierad 238 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA 238 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence 3589999999999999999999865532 23455566667788889999999999532 1223344568899
Q ss_pred EEEEEEeCCCc----ccHHHH---HHHHHHHHhcc-------ccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCc
Q 029920 86 GLVWVVDSSDL----RRLDDC---KMELDNLLKEE-------RLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKT 150 (185)
Q Consensus 86 ~~i~v~d~~~~----~s~~~~---~~~~~~~~~~~-------~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 150 (185)
++++|+|+++. +.+... ...+..+.... ...++|+++|+||+|+.+.....+. ...+ ..
T Consensus 239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l-----~~- 312 (500)
T PRK12296 239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPEL-----EA- 312 (500)
T ss_pred EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHH-----HH-
Confidence 99999999853 233333 22333322110 2346899999999998654222211 1111 11
Q ss_pred cceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 151 RHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
.+++++++||+++.|+++++.+|.+.+...
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 357899999999999999999999987653
No 165
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=1.8e-22 Score=156.83 Aligned_cols=155 Identities=22% Similarity=0.253 Sum_probs=108.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchhh--HHHH------Hhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRTI--RSYW------RNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~~--~~~~------~~~~~ 82 (185)
..++|+++|.+|+|||||+|+|++.... ....|.......+.+.+. .+.+|||||.... ...+ ...+.
T Consensus 196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 196 DVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 3478999999999999999999987653 234556666666666554 8899999997321 1222 23457
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceE-EEeeccc
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK-IVGCSAY 161 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~ 161 (185)
.+|++++|+|++++.++..... +..++......++|+++|+||+|+...... .... .. .+.+ ++.+||+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~-v~~iL~el~~~~~pvIiV~NKiDL~~~~~~-~~~~-~~-------~~~~~~v~ISAk 345 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEA-VNTVLEEIDAHEIPTLLVMNKIDMLDDFEP-RIDR-DE-------ENKPIRVWLSAQ 345 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHH-HHHHHHHhccCCCCEEEEEEcccCCCchhH-HHHH-Hh-------cCCCceEEEeCC
Confidence 8999999999999877666533 233333333347899999999998643211 1111 00 1222 5889999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 029920 162 TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (185)
+|.|+++++++|.+.+..
T Consensus 346 tG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 346 TGAGIPLLFQALTERLSG 363 (426)
T ss_pred CCCCHHHHHHHHHHHhhh
Confidence 999999999999998754
No 166
>PLN00023 GTP-binding protein; Provisional
Probab=99.91 E-value=6.7e-23 Score=151.88 Aligned_cols=121 Identities=22% Similarity=0.389 Sum_probs=100.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc---------------CeEEEEEEcCCchhh
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ---------------KYTLNIWDVGGQRTI 73 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~---------------~~~~~~~D~~g~~~~ 73 (185)
.....+||+++|+.|||||||++++.++.+. .+.+|++... +.+.++ .+.+++|||+|++.+
T Consensus 17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 3556799999999999999999999988775 4567777543 344432 367999999999999
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccc-----------cCCCeEEEEeecCCCCCC
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEER-----------LSGASLLILANKQDINGA 132 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------~~~~~~ivv~nK~D~~~~ 132 (185)
..++..+++++|++|+|||++++++|+.+..|+..+..... ..++|+++|+||+|+...
T Consensus 97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 99999999999999999999999999999999888866421 125899999999999653
No 167
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.90 E-value=8.6e-23 Score=144.31 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=106.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEEEEE-cCeEEEEEEcCCc----------hhhHHHHHh
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKTVTY-QKYTLNIWDVGGQ----------RTIRSYWRN 79 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~----------~~~~~~~~~ 79 (185)
.....++|+++|++|+|||||+++|++.. .....++.+.+...-.+ -+..+.+|||||. +.+......
T Consensus 20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 35677999999999999999999999876 44555555543322111 1468999999994 333344444
Q ss_pred hhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920 80 YFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 80 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+++. .+++++|+|..++.+... ..+...+.. .+.|+++++||+|+.+............. .+.. ...+++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~-~l~~-~~~~~~ 172 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRK-ALKF-GDDEVI 172 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHH-HHHh-cCCceE
Confidence 5544 467888999887544332 222233332 36899999999998654333322222211 1111 246789
Q ss_pred eecccCCCCHHHHHHHHHHHHhh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
++||+++.|++++++.|.+.+.+
T Consensus 173 ~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 173 LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred EEEcCCCCCHHHHHHHHHHHhcC
Confidence 99999999999999999988764
No 168
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=1.7e-22 Score=155.32 Aligned_cols=164 Identities=19% Similarity=0.178 Sum_probs=111.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTDG 86 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 86 (185)
.|+++|.||+|||||+|+|++.+.. ....|.......+...+ ..+.++||||..+ .......+++.+|+
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radv 240 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRV 240 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCE
Confidence 7999999999999999999986642 12234445555566654 5699999999643 22233446789999
Q ss_pred EEEEEeCC---CcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 87 LVWVVDSS---DLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 87 ~i~v~d~~---~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+++|+|++ +.+.++....++..+.... ...+.|+++|+||+|+.......+....+... .. ...+++++||++
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~-~~--~~~~Vi~ISA~t 317 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEA-LG--WEGPVYLISAAS 317 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHH-hC--CCCCEEEEECCC
Confidence 99999998 3445555555555544331 12368999999999986543332222222111 00 123589999999
Q ss_pred CCCHHHHHHHHHHHHhhhcccC
Q 029920 163 GEGLLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~~~~ 184 (185)
+.|+++++++|.+.+.+.-+++
T Consensus 318 g~GIdeLl~~I~~~L~~~~~~~ 339 (390)
T PRK12298 318 GLGVKELCWDLMTFIEENPREE 339 (390)
T ss_pred CcCHHHHHHHHHHHhhhCcccC
Confidence 9999999999999987765544
No 169
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.9e-22 Score=154.86 Aligned_cols=155 Identities=23% Similarity=0.243 Sum_probs=107.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-CeEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-KYTLNIWDVGGQRT-------IRSYWRNYFEQTDG 86 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 86 (185)
.|+++|.||+|||||+++|++.+.. ....|.......+.+. +..+.++|+||..+ +...+..+++.+++
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~~l 239 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRV 239 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhCCE
Confidence 8999999999999999999987643 1223444555556665 68999999999632 22333445677999
Q ss_pred EEEEEeCCCc---ccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 87 LVWVVDSSDL---RRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 87 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+++|+|+++. +.++....+...+..+. ...++|+++|+||+|+... ...+.. +... ...+++++||++
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~-l~~~-----l~~~i~~iSA~t 311 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEE-FKEK-----LGPKVFPISALT 311 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHH-HHHH-----hCCcEEEEeCCC
Confidence 9999999864 45555544444443332 2247899999999998432 122211 1111 125789999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 029920 163 GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~ 180 (185)
+.|+++++++|.+.+.+.
T Consensus 312 geGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 312 GQGLDELLYAVAELLEET 329 (424)
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999887653
No 170
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.90 E-value=4.1e-23 Score=144.05 Aligned_cols=152 Identities=17% Similarity=0.159 Sum_probs=96.9
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEE--EEEEcCeEEEEEEcCCch----------hhHHH
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIK--TVTYQKYTLNIWDVGGQR----------TIRSY 76 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~~----------~~~~~ 76 (185)
+.++.+.++|+++|++|+|||||++++++.. ...++++.+.+.. .+..+ ..+.+|||||.. .+...
T Consensus 12 ~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpG~~~~~~~~~~~~~~~~~ 90 (179)
T TIGR03598 12 QLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-DGFRLVDLPGYGYAKVSKEEKEKWQKL 90 (179)
T ss_pred hCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-CcEEEEeCCCCccccCChhHHHHHHHH
Confidence 4456788999999999999999999999886 3445555543332 23333 379999999942 23333
Q ss_pred HHhhhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce
Q 029920 77 WRNYFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW 153 (185)
Q Consensus 77 ~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (185)
...+++ .+|++++|+|++++-+.... .. ...+.. .+.|+++++||+|+............+....-.....+
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~-~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~ 165 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDL-EM-LEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP 165 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHH-HH-HHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence 344554 45899999999875444432 22 222222 36899999999998654322222221111111111245
Q ss_pred EEEeecccCCCCHH
Q 029920 154 KIVGCSAYTGEGLL 167 (185)
Q Consensus 154 ~~~~~Sa~~~~~i~ 167 (185)
+++++||++|+|++
T Consensus 166 ~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 166 SVQLFSSLKKTGID 179 (179)
T ss_pred ceEEEECCCCCCCC
Confidence 79999999999974
No 171
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.90 E-value=1.9e-22 Score=144.95 Aligned_cols=164 Identities=24% Similarity=0.351 Sum_probs=118.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEE--EEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKT--VTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.+||+++|++|||||||+++|.+..+.. +.++.+..... .... ...+.+|||+|+++++..+..|..+++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 4899999999999999999999998874 44554432222 2222 47799999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHh----------cCcccccCccceEEEeec
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKV----------LNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~~~~S 159 (185)
+|..+..++......|...+......+.|+++++||+|+......... ... .............++++|
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 164 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS 164 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence 999996666666555555444433346999999999999765332211 110 010011111133389999
Q ss_pred cc--CCCCHHHHHHHHHHHHhh
Q 029920 160 AY--TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 160 a~--~~~~i~~l~~~l~~~~~~ 179 (185)
++ .+.++.+++..+...+.+
T Consensus 165 ~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 165 AKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred cccCCCcCHHHHHHHHHHHHHH
Confidence 99 999999999999988754
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=2.8e-22 Score=157.59 Aligned_cols=160 Identities=21% Similarity=0.240 Sum_probs=111.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEE----EEEEEcCeEEEEEEcCCchhhH-----------HHHH
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNI----KTVTYQKYTLNIWDVGGQRTIR-----------SYWR 78 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~----~~~~~~~~~~~~~D~~g~~~~~-----------~~~~ 78 (185)
...++|+++|.+|+|||||+|+|++......++..+.+. ..+..++..+.++||||..... ....
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~ 250 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL 250 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence 357999999999999999999999876544444444333 2345677889999999953321 1123
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+++.+|++++|+|++++.+..... .+... . ..+.|+++++||+|+.+.....+....+.. .+......+++++
T Consensus 251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~-~---~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~-~l~~~~~~~i~~~ 324 (435)
T PRK00093 251 KAIERADVVLLVIDATEGITEQDLR-IAGLA-L---EAGRALVIVVNKWDLVDEKTMEEFKKELRR-RLPFLDYAPIVFI 324 (435)
T ss_pred HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHH-H---HcCCcEEEEEECccCCCHHHHHHHHHHHHH-hcccccCCCEEEE
Confidence 4678899999999999876655432 22222 2 236899999999998754333344333322 1222256789999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|++++++.+.+...+
T Consensus 325 SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 325 SALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999998876543
No 173
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.90 E-value=1.3e-22 Score=138.63 Aligned_cols=142 Identities=19% Similarity=0.167 Sum_probs=95.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch----hhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR----TIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
+|+++|++|+|||||+|+|.+.... ..++.+ +.+... .+|||||.. .+.......+..+|++++|+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-~~~~~~-----v~~~~~--~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~ 74 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-ARKTQA-----VEFNDK--GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGA 74 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-CccceE-----EEECCC--CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeC
Confidence 7999999999999999999876421 112221 222222 379999962 2222233447899999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
++.+++.. .++..+ ..+.|+++++||+|+... ......+...... ...|++++||++|.|++++++.+
T Consensus 75 ~~~~s~~~--~~~~~~-----~~~~~ii~v~nK~Dl~~~-~~~~~~~~~~~~~----~~~p~~~~Sa~~g~gi~~l~~~l 142 (158)
T PRK15467 75 NDPESRLP--AGLLDI-----GVSKRQIAVISKTDMPDA-DVAATRKLLLETG----FEEPIFELNSHDPQSVQQLVDYL 142 (158)
T ss_pred CCcccccC--HHHHhc-----cCCCCeEEEEEccccCcc-cHHHHHHHHHHcC----CCCCEEEEECCCccCHHHHHHHH
Confidence 98766532 233322 136789999999998653 3333333222111 22589999999999999999999
Q ss_pred HHHHhh
Q 029920 174 VQDIAS 179 (185)
Q Consensus 174 ~~~~~~ 179 (185)
.+.+.+
T Consensus 143 ~~~~~~ 148 (158)
T PRK15467 143 ASLTKQ 148 (158)
T ss_pred HHhchh
Confidence 887754
No 174
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.90 E-value=1.4e-22 Score=143.91 Aligned_cols=158 Identities=16% Similarity=0.143 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc----cc--ccCcceEEEEEEEc---------------------------C----
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS----VI--SPTLGFNIKTVTYQ---------------------------K---- 59 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~----~~--~~t~~~~~~~~~~~---------------------------~---- 59 (185)
++|+++|+.|+|||||+.+|.+.... .. ..+.......+.+. +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 47999999999999999999765221 11 11111111111110 2
Q ss_pred --eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920 60 --YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137 (185)
Q Consensus 60 --~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 137 (185)
..+.+|||||++.+...+...+..+|++++|+|++++.........+..+... ...|+++++||+|+........
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~---~~~~iiivvNK~Dl~~~~~~~~ 157 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM---GLKHIIIVQNKIDLVKEEQALE 157 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc---CCCcEEEEEEchhccCHHHHHH
Confidence 67999999999998888888888999999999999742111122222222111 1257999999999965322222
Q ss_pred HHHhcCcccccC--ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 138 IAKVLNLEAMDK--TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 138 ~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
..+.+.. .+.. ...++++++||++|.|++++++++.+.+.
T Consensus 158 ~~~~i~~-~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 158 NYEQIKK-FVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred HHHHHHH-HHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 1121111 0110 13567999999999999999999988664
No 175
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.90 E-value=1.2e-22 Score=154.43 Aligned_cols=148 Identities=23% Similarity=0.291 Sum_probs=111.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchh---------hHHHHHhhhcC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRT---------IRSYWRNYFEQ 83 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 83 (185)
+.|+++|.||+|||||.|+|++........+.|++ +...++.+..|.++||+|.+. +..+....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999998887766655 445678888999999999542 33455667789
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
+|+++||+|....-+- ..+.+..++.. .++|+++|+||+|.... .....+.+.. ..-.++++||.+|
T Consensus 84 ADvilfvVD~~~Git~--~D~~ia~~Lr~---~~kpviLvvNK~D~~~~--e~~~~efysl------G~g~~~~ISA~Hg 150 (444)
T COG1160 84 ADVILFVVDGREGITP--ADEEIAKILRR---SKKPVILVVNKIDNLKA--EELAYEFYSL------GFGEPVPISAEHG 150 (444)
T ss_pred CCEEEEEEeCCCCCCH--HHHHHHHHHHh---cCCCEEEEEEcccCchh--hhhHHHHHhc------CCCCceEeehhhc
Confidence 9999999999863222 22333444442 26999999999997632 2223333332 1224799999999
Q ss_pred CCHHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQDI 177 (185)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (185)
.|+.+|.+++...+
T Consensus 151 ~Gi~dLld~v~~~l 164 (444)
T COG1160 151 RGIGDLLDAVLELL 164 (444)
T ss_pred cCHHHHHHHHHhhc
Confidence 99999999999986
No 176
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.89 E-value=8e-24 Score=145.93 Aligned_cols=164 Identities=20% Similarity=0.295 Sum_probs=122.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+|++|+|+.++|||+|+-.+..+.++ .+.||.-.++. .+.+ ..+.+.+|||+|++++..++...+..+|++++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~ 82 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL 82 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence 4689999999999999999999888886 56676652222 2334 34789999999999999988888999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHH--------HhcCcccccCccceEEEeecc
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIA--------KVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~~~~Sa 160 (185)
||++.++.||++....|..-+++ .+++.|+|+|++|.|+.++.... .+. ...+...........+++|||
T Consensus 83 cfsv~~p~S~~nv~~kW~pEi~~-~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 83 CFSVVSPESFENVKSKWIPEIKH-HCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEcCChhhHHHHHhhhhHHHHh-hCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999987655544444 34789999999999997432111 111 111111222223367999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++..|+.++|+..+.....
T Consensus 162 ~tq~~v~~vF~~a~~~~l~ 180 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALR 180 (198)
T ss_pred hhhCCcHHHHHHHHHHHhc
Confidence 9999999999998887643
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.89 E-value=2.5e-22 Score=164.82 Aligned_cols=158 Identities=20% Similarity=0.212 Sum_probs=112.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+++.|+++|+.++|||||+++|.+..+... ..|.......+.+++..+.+|||||++.|..++..++..+|++++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 45778999999999999999999987665321 122333344566778899999999999999999989999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccCCCCH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~~~~i 166 (185)
|+|+++... ......+... ...++|+|+++||+|+... ....+...+... .... ...++++++||++|.|+
T Consensus 367 VVdAddGv~-~qT~e~i~~a----~~~~vPiIVviNKiDl~~a-~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI 440 (787)
T PRK05306 367 VVAADDGVM-PQTIEAINHA----KAAGVPIIVAINKIDKPGA-NPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGI 440 (787)
T ss_pred EEECCCCCC-HhHHHHHHHH----HhcCCcEEEEEECcccccc-CHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCc
Confidence 999987422 1112222222 2347999999999999654 223333222111 1110 12478999999999999
Q ss_pred HHHHHHHHHH
Q 029920 167 LEGFDWLVQD 176 (185)
Q Consensus 167 ~~l~~~l~~~ 176 (185)
++++++|...
T Consensus 441 ~eLle~I~~~ 450 (787)
T PRK05306 441 DELLEAILLQ 450 (787)
T ss_pred hHHHHhhhhh
Confidence 9999998753
No 178
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.89 E-value=3.2e-22 Score=160.52 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=110.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcceEEEEEEEcCe-EEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLGFNIKTVTYQKY-TLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
.++++|+++|++|+|||||+++|.+..+.... .|.......+.+++. .+.+|||||++.|..++..++..+|++++
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 45689999999999999999999987664321 233333444555444 89999999999999999988999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc---cCccceEEEeecccCCCCH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM---DKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~~i 166 (185)
|+|+++... ......+... ...++|+++++||+|+... ..++....+....+ ......+++++||++|.|+
T Consensus 165 VVda~dgv~-~qT~e~i~~~----~~~~vPiIVviNKiDl~~~-~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI 238 (587)
T TIGR00487 165 VVAADDGVM-PQTIEAISHA----KAANVPIIVAINKIDKPEA-NPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI 238 (587)
T ss_pred EEECCCCCC-HhHHHHHHHH----HHcCCCEEEEEECcccccC-CHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence 999987432 2222222222 2237899999999998653 33333333321111 0112357999999999999
Q ss_pred HHHHHHHHH
Q 029920 167 LEGFDWLVQ 175 (185)
Q Consensus 167 ~~l~~~l~~ 175 (185)
+++++++..
T Consensus 239 ~eLl~~I~~ 247 (587)
T TIGR00487 239 DELLDMILL 247 (587)
T ss_pred HHHHHhhhh
Confidence 999999865
No 179
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.89 E-value=6.1e-22 Score=135.90 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=103.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce----EEEEEEEcCeEEEEEEcCCchhhH--------HHHHhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF----NIKTVTYQKYTLNIWDVGGQRTIR--------SYWRNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~----~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 82 (185)
...+|+++|++|+|||||++++.+.......+.... ........+..+.+|||||..... ......+.
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 357899999999999999999998876433322221 122233455789999999965332 23344578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC-CCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING-ALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
.+|++++|+|++++.+ ....++...+.. .+.|+++++||+|+.. .....+....+... ....+++++|++
T Consensus 82 ~~d~i~~v~d~~~~~~--~~~~~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~ 152 (168)
T cd04163 82 DVDLVLFVVDASEPIG--EGDEFILELLKK---SKTPVILVLNKIDLVKDKEDLLPLLEKLKEL----GPFAEIFPISAL 152 (168)
T ss_pred hCCEEEEEEECCCccC--chHHHHHHHHHH---hCCCEEEEEEchhccccHHHHHHHHHHHHhc----cCCCceEEEEec
Confidence 8999999999998621 222222222222 2689999999999873 33333333333221 124578999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029920 162 TGEGLLEGFDWLVQD 176 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~ 176 (185)
++.|+++++++|.+.
T Consensus 153 ~~~~~~~l~~~l~~~ 167 (168)
T cd04163 153 KGENVDELLEEIVKY 167 (168)
T ss_pred cCCChHHHHHHHHhh
Confidence 999999999998764
No 180
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.89 E-value=7.3e-22 Score=155.03 Aligned_cols=149 Identities=23% Similarity=0.329 Sum_probs=107.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCc--------hhhHHHHHhhhcCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQ--------RTIRSYWRNYFEQTD 85 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~~d 85 (185)
+|+++|.+|+|||||+|+|.+.......+.. ......+.+++..+.+|||||. +.+......+++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 5899999999999999999998764443333 3445566778899999999995 445556677789999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++++|+|+.+..+... ..+..+++. .++|+++|+||+|+...... ..+.... ...+++++||++|.|
T Consensus 81 ~vl~vvD~~~~~~~~d--~~i~~~l~~---~~~piilVvNK~D~~~~~~~--~~~~~~l------g~~~~~~vSa~~g~g 147 (429)
T TIGR03594 81 VILFVVDGREGLTPED--EEIAKWLRK---SGKPVILVANKIDGKKEDAV--AAEFYSL------GFGEPIPISAEHGRG 147 (429)
T ss_pred EEEEEEeCCCCCCHHH--HHHHHHHHH---hCCCEEEEEECccCCccccc--HHHHHhc------CCCCeEEEeCCcCCC
Confidence 9999999987533332 222333332 26899999999998654321 1111110 222589999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
++++++++.+.+.+
T Consensus 148 v~~ll~~i~~~l~~ 161 (429)
T TIGR03594 148 IGDLLDAILELLPE 161 (429)
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999988743
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.89 E-value=6.7e-22 Score=161.05 Aligned_cols=159 Identities=16% Similarity=0.167 Sum_probs=110.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccC--cceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPT--LGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t--~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
..+.+.|+++|+.++|||||+++|.+..+... ..| .+.....+.. .+..+.+|||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 34668999999999999999999988766421 122 2222222222 3589999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYT 162 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~ 162 (185)
++++|+|+++....+. ...+..+ ...++|+|+++||+|+.... ..++...+... .... ...++++++||++
T Consensus 321 iaILVVDA~dGv~~QT-~E~I~~~----k~~~iPiIVViNKiDl~~~~-~e~v~~eL~~~~ll~e~~g~~vpvv~VSAkt 394 (742)
T CHL00189 321 IAILIIAADDGVKPQT-IEAINYI----QAANVPIIVAINKIDKANAN-TERIKQQLAKYNLIPEKWGGDTPMIPISASQ 394 (742)
T ss_pred EEEEEEECcCCCChhh-HHHHHHH----HhcCceEEEEEECCCccccC-HHHHHHHHHHhccchHhhCCCceEEEEECCC
Confidence 9999999987432221 1222222 22378999999999987542 23333322211 0010 1247899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029920 163 GEGLLEGFDWLVQDI 177 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~ 177 (185)
|.|++++++++....
T Consensus 395 G~GIdeLle~I~~l~ 409 (742)
T CHL00189 395 GTNIDKLLETILLLA 409 (742)
T ss_pred CCCHHHHHHhhhhhh
Confidence 999999999987754
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=6.2e-22 Score=155.64 Aligned_cols=146 Identities=21% Similarity=0.286 Sum_probs=104.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------hHHHHHhhhcCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------IRSYWRNYFEQT 84 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~ 84 (185)
++|+++|.+|+|||||+|+|.+........ |.......+.+++..+.+|||||... +......++..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 589999999999999999999887543333 33344556777889999999999876 334455677899
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccCC
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTG 163 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~ 163 (185)
|++++|+|+.++.+... ..+..++.. .+.|+++|+||+|+.+. .....+... .++ .++++||++|
T Consensus 82 d~il~vvd~~~~~~~~~--~~~~~~l~~---~~~piilv~NK~D~~~~--~~~~~~~~~-------lg~~~~~~iSa~~g 147 (435)
T PRK00093 82 DVILFVVDGRAGLTPAD--EEIAKILRK---SNKPVILVVNKVDGPDE--EADAYEFYS-------LGLGEPYPISAEHG 147 (435)
T ss_pred CEEEEEEECCCCCCHHH--HHHHHHHHH---cCCcEEEEEECccCccc--hhhHHHHHh-------cCCCCCEEEEeeCC
Confidence 99999999987533322 122333332 26899999999997542 122222211 122 3789999999
Q ss_pred CCHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQD 176 (185)
Q Consensus 164 ~~i~~l~~~l~~~ 176 (185)
.|++++++.+.+.
T Consensus 148 ~gv~~l~~~I~~~ 160 (435)
T PRK00093 148 RGIGDLLDAILEE 160 (435)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999873
No 183
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=9.2e-22 Score=162.20 Aligned_cols=160 Identities=19% Similarity=0.213 Sum_probs=111.8
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh----------hHHH-HH
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT----------IRSY-WR 78 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~~ 78 (185)
+..++|+++|.+|+|||||+|+|.+.......+ |.......+.+++..+.+|||||..+ +... ..
T Consensus 448 ~~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~ 527 (712)
T PRK09518 448 SGLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ 527 (712)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence 345899999999999999999999987533222 33333445667888899999999532 1111 23
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+++.+|++++|+|+++..+.+... .+..+.. .++|+++|+||+|+.+..........+.. .+......+++++
T Consensus 528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~~~~~~~~~~~-~l~~~~~~~ii~i 601 (712)
T PRK09518 528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFRRQRLERLWKT-EFDRVTWARRVNL 601 (712)
T ss_pred HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhHHHHHHHHHHH-hccCCCCCCEEEE
Confidence 4568899999999999887776543 2333322 37999999999999764333333222221 1112244578999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|++++++.+.+...+
T Consensus 602 SAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 602 SAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988765
No 184
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.6e-22 Score=131.97 Aligned_cols=111 Identities=23% Similarity=0.442 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccc--cCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VIS--PTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~--~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
||+|+|++|||||||+++|++.... ... ............ ....+.+||++|++.+...+...+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988776 112 222233223333 334689999999988887777778999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCC
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQD 128 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D 128 (185)
||+++++++..+..++..+.... ...+.|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999998755533332221 234699999999998
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.88 E-value=2.3e-21 Score=159.86 Aligned_cols=152 Identities=22% Similarity=0.273 Sum_probs=107.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hHHHHHhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IRSYWRNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 82 (185)
...+|+++|.+|+|||||+|+|++.......++.+++... ..+++..+.+|||||... +......+++
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS 353 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence 3478999999999999999999998776666666655443 345678999999999653 3445566788
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
.+|++++|+|+++.-. .....+...+.. .++|+++|+||+|+..... .....+... .. .++++||++
T Consensus 354 ~aD~iL~VvDa~~~~~--~~d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~~--~~~~~~~lg-----~~-~~~~iSA~~ 420 (712)
T PRK09518 354 LADAVVFVVDGQVGLT--STDERIVRMLRR---AGKPVVLAVNKIDDQASEY--DAAEFWKLG-----LG-EPYPISAMH 420 (712)
T ss_pred hCCEEEEEEECCCCCC--HHHHHHHHHHHh---cCCCEEEEEECcccccchh--hHHHHHHcC-----CC-CeEEEECCC
Confidence 9999999999986322 222223333332 4799999999999854321 112211111 11 247899999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 029920 163 GEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~ 179 (185)
|.|++++++++.+.+.+
T Consensus 421 g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 421 GRGVGDLLDEALDSLKV 437 (712)
T ss_pred CCCchHHHHHHHHhccc
Confidence 99999999999988754
No 186
>PTZ00099 rab6; Provisional
Probab=99.88 E-value=4.1e-21 Score=133.33 Aligned_cols=131 Identities=18% Similarity=0.298 Sum_probs=101.9
Q ss_pred cccccCcceEEE--EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 029920 42 SVISPTLGFNIK--TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG 117 (185)
Q Consensus 42 ~~~~~t~~~~~~--~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 117 (185)
..+.+|.+.... .+..+ .+.+.+|||||++.+...+..+++++|++|+|||++++.+|+.+..|+..+.... .++
T Consensus 7 ~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~ 85 (176)
T PTZ00099 7 NNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKD 85 (176)
T ss_pred CCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCC
Confidence 356677774443 34443 4789999999999999999999999999999999999999999999988887653 356
Q ss_pred CeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 118 ASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 118 ~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.|+++|+||+|+.+. ...++..... ....+.++++||++|.|++++|++|.+.+.+
T Consensus 86 ~piilVgNK~DL~~~~~v~~~e~~~~~------~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~ 143 (176)
T PTZ00099 86 VIIALVGNKTDLGDLRKVTYEEGMQKA------QEYNTMFHETSAKAGHNIKVLFKKIAAKLPN 143 (176)
T ss_pred CeEEEEEECcccccccCCCHHHHHHHH------HHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999998542 2222222211 1135578999999999999999999998855
No 187
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.88 E-value=4.1e-21 Score=154.81 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=108.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCC--------ccccc------CcceEEE----EEEE---c--CeEEEEEEcCCch
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDT--------SVISP------TLGFNIK----TVTY---Q--KYTLNIWDVGGQR 71 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~------t~~~~~~----~~~~---~--~~~~~~~D~~g~~ 71 (185)
+..+++++|+.++|||||+++|..... ..+.+ +.+.+.. .+.+ + .+.+++|||||+.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 346899999999999999999976421 11111 1232222 2333 2 2789999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCcc
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTR 151 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~ 151 (185)
.+...+..++..+|++++|+|+++..+.+....+.. ... .+.|+++|+||+|+.... ..+....+... + ...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~-~~~----~~ipiIiViNKiDl~~~~-~~~~~~el~~~-l-g~~ 153 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYL-ALE----NDLEIIPVINKIDLPSAD-PERVKKEIEEV-I-GLD 153 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHH-HHH----cCCCEEEEEECcCCCccC-HHHHHHHHHHH-h-CCC
Confidence 999999999999999999999998766655444332 222 268999999999986542 22222111110 0 001
Q ss_pred ceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 152 HWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
...++++||++|.|+++++++|.+.+.
T Consensus 154 ~~~vi~vSAktG~GI~~Lle~I~~~lp 180 (595)
T TIGR01393 154 ASEAILASAKTGIGIEEILEAIVKRVP 180 (595)
T ss_pred cceEEEeeccCCCCHHHHHHHHHHhCC
Confidence 235899999999999999999998764
No 188
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=148.75 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=118.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchhhHH-----------HHHh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRTIRS-----------YWRN 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~~~~-----------~~~~ 79 (185)
..++|+++|.||+|||||+|+|.+......++..+++... +++++..+.++||+|...... ....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHh
Confidence 4699999999999999999999999998777766666554 566789999999999543222 2334
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEe
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
.+..+|++++|+|++.+-+-+. ..+..+. ...+.++++++||+|+.+. ...++....+.. .+.+....|++.
T Consensus 257 aI~~a~vvllviDa~~~~~~qD--~~ia~~i---~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~-~l~~l~~a~i~~ 330 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQD--LRIAGLI---EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRR-KLPFLDFAPIVF 330 (444)
T ss_pred HHhhcCEEEEEEECCCCchHHH--HHHHHHH---HHcCCCeEEEEEccccCCchhhHHHHHHHHHHH-HhccccCCeEEE
Confidence 5678999999999998654443 2223333 3347999999999998775 333444444433 344446778999
Q ss_pred ecccCCCCHHHHHHHHHHHHh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+||++|.++.++++.+.+...
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~ 351 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYE 351 (444)
T ss_pred EEecCCCChHHHHHHHHHHHH
Confidence 999999999999999877654
No 189
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.88 E-value=1.4e-21 Score=157.36 Aligned_cols=158 Identities=22% Similarity=0.167 Sum_probs=109.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc----cc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS----VI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~----~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.|+++|++++|||||+++|++.... .. ..|.......+..++..+.+||+||++.+......++.++|++++|
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILV 80 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAALLV 80 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEEEE
Confidence 46899999999999999999974421 11 2344445556777778999999999999988888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHHHHHhcCcc--cccCccceEEEeecccCCCCHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTEIAKVLNLE--AMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|+++... ....+.+. ++.. .++| +++++||+|+.+.............. ......+.+++++||++|.|++
T Consensus 81 VDa~~G~~-~qT~ehl~-il~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~ 155 (581)
T TIGR00475 81 VDADEGVM-TQTGEHLA-VLDL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG 155 (581)
T ss_pred EECCCCCc-HHHHHHHH-HHHH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence 99997321 11222222 2222 2566 99999999997643222222111110 0111125789999999999999
Q ss_pred HHHHHHHHHHhh
Q 029920 168 EGFDWLVQDIAS 179 (185)
Q Consensus 168 ~l~~~l~~~~~~ 179 (185)
++++.+.+.+..
T Consensus 156 eL~~~L~~l~~~ 167 (581)
T TIGR00475 156 ELKKELKNLLES 167 (581)
T ss_pred hHHHHHHHHHHh
Confidence 999998876643
No 190
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.88 E-value=1.7e-21 Score=132.54 Aligned_cols=150 Identities=23% Similarity=0.275 Sum_probs=104.2
Q ss_pred EEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEc-CeEEEEEEcCCchhhH-------HHHHhhhcCCCEEE
Q 029920 21 MVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQ-KYTLNIWDVGGQRTIR-------SYWRNYFEQTDGLV 88 (185)
Q Consensus 21 v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~-~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~~i 88 (185)
++|++|+|||||++++.+........ +........... ...+.+||+||..... .....++..+|+++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 58999999999999999876653222 222333333333 6789999999966543 24445778999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|+|+.+..+..... ++... ...+.|+++|+||+|+............... ........+++++||+++.|+++
T Consensus 81 ~v~~~~~~~~~~~~~-~~~~~----~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 81 FVVDADLRADEEEEK-LLELL----RERGKPVLLVLNKIDLLPEEEEEELLELRLL-ILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEeCCCCCCHHHHH-HHHHH----HhcCCeEEEEEEccccCChhhHHHHHHHHHh-hcccccCCceEEEeeeccCCHHH
Confidence 999999877666543 22222 2247999999999998766544443221111 11222567899999999999999
Q ss_pred HHHHHHHH
Q 029920 169 GFDWLVQD 176 (185)
Q Consensus 169 l~~~l~~~ 176 (185)
+++++.+.
T Consensus 155 l~~~l~~~ 162 (163)
T cd00880 155 LREALIEA 162 (163)
T ss_pred HHHHHHhh
Confidence 99998765
No 191
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.87 E-value=4.6e-21 Score=146.20 Aligned_cols=153 Identities=20% Similarity=0.292 Sum_probs=113.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE----EEEEEEcCeEEEEEEcCCchhhHHH--------HHhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN----IKTVTYQKYTLNIWDVGGQRTIRSY--------WRNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 80 (185)
-..-++++++|.||+|||||+|+|.+.....+++-.|++ ...+..+++++.+.||+|..+-... ....
T Consensus 214 lr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 214 LREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred hhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 445689999999999999999999999998777655544 4456779999999999996543222 2334
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|.+++|+|++.+.+-.... +.. ....+.|+++|.||.|+......... ... .+.+++.+|+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-----~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~--~~~-------~~~~~i~iSa 358 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-----LIE-LLPKKKPIIVVLNKADLVSKIELESE--KLA-------NGDAIISISA 358 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-----HHH-hcccCCCEEEEEechhcccccccchh--hcc-------CCCceEEEEe
Confidence 68899999999999852222211 111 12347999999999999876553333 111 3447899999
Q ss_pred cCCCCHHHHHHHHHHHHhhh
Q 029920 161 YTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~ 180 (185)
++|.|++.+.+.|.+.+...
T Consensus 359 ~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 359 KTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred cCccCHHHHHHHHHHHHhhc
Confidence 99999999999998877543
No 192
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.87 E-value=3.4e-23 Score=138.43 Aligned_cols=162 Identities=17% Similarity=0.277 Sum_probs=128.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EE--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KT--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
+..+|++++|..++||||++.++|.+-+. .+-.++++.. +. +..+++.+.+||++|++++..+...|++++.+.+
T Consensus 18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v 97 (246)
T KOG4252|consen 18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV 97 (246)
T ss_pred hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence 44689999999999999999999977664 5556666332 22 3345678899999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|++-+|+.||+....|...+.... ..+|.++|-||+|+.+.-.. ....+.+. +.....++.+|++...|+.
T Consensus 98 LVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~la-----k~l~~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 98 LVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLA-----KKLHKRLYRTSVKEDFNVM 170 (246)
T ss_pred EEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHH-----HHhhhhhhhhhhhhhhhhH
Confidence 9999999999999999999987754 48999999999998654211 11111111 1245568999999999999
Q ss_pred HHHHHHHHHHhhhcc
Q 029920 168 EGFDWLVQDIASRIY 182 (185)
Q Consensus 168 ~l~~~l~~~~~~~~~ 182 (185)
.+|..|+..+.+...
T Consensus 171 ~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKK 185 (246)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998876544
No 193
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.87 E-value=3.7e-21 Score=150.64 Aligned_cols=154 Identities=19% Similarity=0.189 Sum_probs=101.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTY 57 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 57 (185)
..++.++|+++|+.++|||||+++|+.. ... ....|.......+..
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~ 82 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET 82 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc
Confidence 4677899999999999999999998742 111 011233344455667
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTP- 135 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~- 135 (185)
++..+.+|||||++.+.......+..+|++++|+|+++.+++.... .....+.... ...|+++++||+|+.+....
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~ 160 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEE 160 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHH
Confidence 7899999999999988777777788999999999999874331111 1111122221 23579999999999642221
Q ss_pred -----HHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 136 -----TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 136 -----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
.++...+....+. ...++++++||++|.|+++
T Consensus 161 ~~~~~~ei~~~~~~~g~~-~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 161 FEAIKKEVSNLIKKVGYN-PDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHcCCC-cccceEEEeeccccccccc
Confidence 1122222111111 1347899999999999986
No 194
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.87 E-value=2.3e-20 Score=135.01 Aligned_cols=149 Identities=21% Similarity=0.207 Sum_probs=102.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhh-------HHHHHhhhcCCCEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI-------RSYWRNYFEQTDGL 87 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~d~~ 87 (185)
+|+++|++|+|||||+++|.+.... ....|.......+.+++..+++||+||..+. ......+++.+|++
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 7899999999999999999987642 1223444555667778899999999996432 22345578999999
Q ss_pred EEEEeCCCcc-cHHHHHHHHH----------------------------------------HHHhcc-------------
Q 029920 88 VWVVDSSDLR-RLDDCKMELD----------------------------------------NLLKEE------------- 113 (185)
Q Consensus 88 i~v~d~~~~~-s~~~~~~~~~----------------------------------------~~~~~~------------- 113 (185)
++|+|++++. ..+.+...+. .++...
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 9999998754 2222222221 111110
Q ss_pred -----------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 114 -----------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 114 -----------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
....+|+++|+||+|+... ++... +. ...+++++||+++.|++++++.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~---~~~~~-~~-------~~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISI---EELDL-LA-------RQPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCH---HHHHH-Hh-------cCCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0123689999999998643 22221 21 123589999999999999999998865
No 195
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.86 E-value=9e-21 Score=156.23 Aligned_cols=150 Identities=21% Similarity=0.210 Sum_probs=104.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHH----------HHHhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRS----------YWRNY 80 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~ 80 (185)
+.++|+++|+||||||||+|+|++.+.. .+...+ .....+..++..+.++||||..++.. ....+
T Consensus 2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGARQR-VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCc-cCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 3578999999999999999999987652 333333 33334566788999999999765432 12223
Q ss_pred h--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 81 F--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 81 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+ ..+|++++|+|+++.++. ..++.++.+ .++|+++++||+|+.+........+.+. +..+.|++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~id~~~L~-----~~LG~pVvpi 148 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIRIDIDALS-----ARLGCPVIPL 148 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcHHHHHHHH-----HHhCCCEEEE
Confidence 2 478999999999885432 223333332 2799999999999865433222222222 1145689999
Q ss_pred cccCCCCHHHHHHHHHHHH
Q 029920 159 SAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~ 177 (185)
||+++.|++++.+.+.+..
T Consensus 149 SA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 149 VSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred EeecCCCHHHHHHHHHHhh
Confidence 9999999999999987764
No 196
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.9e-20 Score=151.15 Aligned_cols=158 Identities=19% Similarity=0.200 Sum_probs=107.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc------cc------ccCcce----EEEEEEE-----cCeEEEEEEcCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS------VI------SPTLGF----NIKTVTY-----QKYTLNIWDVGG 69 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~------~~t~~~----~~~~~~~-----~~~~~~~~D~~g 69 (185)
.++..+++++|+.++|||||+++|.... +. .+ ..+.+. ....+.+ ..+.+++|||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 3456789999999999999999986531 10 11 111222 1222333 257899999999
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK 149 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (185)
+.++...+..+++.+|++++|+|+++....+....+ ..... .+.|+++|+||+|+..... ......+... + .
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~-~~~~~----~~lpiIvViNKiDl~~a~~-~~v~~ei~~~-l-g 155 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANV-YLALE----NDLEIIPVLNKIDLPAADP-ERVKQEIEDV-I-G 155 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH-HHHHH----CCCCEEEEEECCCCCcccH-HHHHHHHHHH-h-C
Confidence 999999999999999999999999986554433332 22222 3689999999999865432 2222111110 0 0
Q ss_pred ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 150 TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.....++++||++|.|+++++++|.+.+.
T Consensus 156 ~~~~~vi~iSAktG~GI~~Ll~~I~~~lp 184 (600)
T PRK05433 156 IDASDAVLVSAKTGIGIEEVLEAIVERIP 184 (600)
T ss_pred CCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 02235899999999999999999998765
No 197
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.86 E-value=6.4e-21 Score=149.29 Aligned_cols=154 Identities=21% Similarity=0.241 Sum_probs=101.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 58 (185)
.+..++|+++|++++|||||+++|+...-. ....|.......+..+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 567899999999999999999999732211 1122444555566778
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--- 135 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--- 135 (185)
+..+.+|||||++.+.......+..+|++++|+|++++.++.....+...+.... ...|+++++||+|+.+....
T Consensus 83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~ 160 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYE 160 (425)
T ss_pred CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHH
Confidence 8999999999998887666666789999999999987322222111122222221 12479999999998752211
Q ss_pred ---HHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 136 ---TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+++...+....+.. ..++++++||++|.|++++
T Consensus 161 ~~~~~i~~~l~~~g~~~-~~~~ii~iSA~~g~gi~~~ 196 (425)
T PRK12317 161 EVKEEVSKLLKMVGYKP-DDIPFIPVSAFEGDNVVKK 196 (425)
T ss_pred HHHHHHHHHHHhhCCCc-CcceEEEeecccCCCcccc
Confidence 12222221111111 2468999999999999873
No 198
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.86 E-value=8.9e-21 Score=124.99 Aligned_cols=135 Identities=24% Similarity=0.294 Sum_probs=95.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCC----chhhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG----QRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
||+++|+.|||||||+++|.+.... +..|.... +. =..+|||| .+.+..........+|++++|.|+
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~-~~KTq~i~-----~~---~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~da 73 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIR-YKKTQAIE-----YY---DNTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDA 73 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCC-cCccceeE-----ec---ccEEECChhheeCHHHHHHHHHHHhhCCEEEEEecC
Confidence 7999999999999999999987552 22222221 11 14599999 444555555566789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
+++.+.-. -.+... .+.|+|-|+||+|+. +..+.+.....+....+. .+|++|+.+|+|+++|.++
T Consensus 74 t~~~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-----~if~vS~~~~eGi~eL~~~ 140 (143)
T PF10662_consen 74 TEPRSVFP-----PGFASM---FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVK-----EIFEVSAVTGEGIEELKDY 140 (143)
T ss_pred CCCCccCC-----chhhcc---cCCCEEEEEECccCccchhhHHHHHHHHHHcCCC-----CeEEEECCCCcCHHHHHHH
Confidence 98654321 111111 258999999999998 444555555556554433 3699999999999999988
Q ss_pred HH
Q 029920 173 LV 174 (185)
Q Consensus 173 l~ 174 (185)
|.
T Consensus 141 L~ 142 (143)
T PF10662_consen 141 LE 142 (143)
T ss_pred Hh
Confidence 64
No 199
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.86 E-value=1.6e-20 Score=132.21 Aligned_cols=145 Identities=19% Similarity=0.131 Sum_probs=95.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC----------c---------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT----------S---------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 76 (185)
.++|+++|+.++|||||+++|++... . ....|.......+..++.++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 47899999999999999999975310 0 0111222233334556789999999999988888
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccccCc
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAMDKT 150 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~~ 150 (185)
....+..+|++++|+|+...-. ......+..+.. .++| +|+++||+|+...... + ++...+....+..
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~- 155 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDG- 155 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccc-
Confidence 8888899999999999986422 222222333222 2565 7899999998643221 1 1222222111211
Q ss_pred cceEEEeecccCCCCH
Q 029920 151 RHWKIVGCSAYTGEGL 166 (185)
Q Consensus 151 ~~~~~~~~Sa~~~~~i 166 (185)
.+++++++||++|.|+
T Consensus 156 ~~v~iipiSa~~g~n~ 171 (195)
T cd01884 156 DNTPIVRGSALKALEG 171 (195)
T ss_pred cCCeEEEeeCccccCC
Confidence 3588999999999985
No 200
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=4.8e-21 Score=126.55 Aligned_cols=169 Identities=34% Similarity=0.546 Sum_probs=139.7
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...--.+.=|++++|--|+|||||++.|.........||...+...+.+.+..|+.+|.+|+..-+..|..|+..+|+++
T Consensus 13 ~LgL~kK~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 13 FLGLYKKFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred HHHHhccCceEEEEeecCCchhhHHHHHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 34445666799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc---------Cc--cceEEEe
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD---------KT--RHWKIVG 157 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~--~~~~~~~ 157 (185)
+.+|+.|.+.|.+.+..++..+......+.|+++.+||+|...+....+....+...... .. .-..++.
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfm 172 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFM 172 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEE
Confidence 999999999999999999988887667789999999999998876665544333221111 11 1234677
Q ss_pred ecccCCCCHHHHHHHHHHHH
Q 029920 158 CSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~ 177 (185)
||...+.+-.+.|.|+.+.+
T Consensus 173 csi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 173 CSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEccCccceeeeehhhhc
Confidence 88888888777887776543
No 201
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.86 E-value=2.8e-20 Score=149.26 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=104.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcc-----cccCcceEEEEEEE----------------cCeEEEEEEcCCchhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIKTVTY----------------QKYTLNIWDVGGQRTI 73 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~-----~~~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~ 73 (185)
+.+-|+++|++|+|||||+++|.+..+.. .+.+.+........ ....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 45679999999999999999999876632 22233322211111 1124889999999999
Q ss_pred HHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHH
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--------------TPT 136 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~ 136 (185)
..++..+++.+|++++|+|+++ +.+++.+ . .+.. .+.|+++++||+|+.+.. ...
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~-~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~ 154 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEAL----N-ILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEI 154 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----H-HHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhH
Confidence 9999999999999999999987 3333332 1 1221 368999999999986421 000
Q ss_pred HHHH-----------hcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 137 EIAK-----------VLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 137 ~~~~-----------~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.+.. .+....+ ......+++++||++|.|++++.+++.....
T Consensus 155 ~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 155 QVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 1100 1111111 1123578999999999999999999876543
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.85 E-value=8.3e-21 Score=153.07 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=97.6
Q ss_pred cCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH------HHhhh--cCCCEEEEE
Q 029920 23 GLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY------WRNYF--EQTDGLVWV 90 (185)
Q Consensus 23 G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~v 90 (185)
|.+|+|||||+|++.+.... .+...+ .....+.+++..+++|||||+.++... ...++ +.+|++++|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-VGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-ecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 89999999999999988652 222222 333446677888999999998765432 33333 478999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
+|+++.+. ...+..+..+ .+.|+++++||+|+.+........+.+. +..+.+++++||++|.|+++++
T Consensus 80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~~d~~~L~-----~~lg~pvv~tSA~tg~Gi~eL~ 147 (591)
T TIGR00437 80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIRIDEEKLE-----ERLGVPVVPTSATEGRGIERLK 147 (591)
T ss_pred ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCChhhHHHHH-----HHcCCCEEEEECCCCCCHHHHH
Confidence 99987432 2222333322 3799999999999864332221112221 1145689999999999999999
Q ss_pred HHHHHHH
Q 029920 171 DWLVQDI 177 (185)
Q Consensus 171 ~~l~~~~ 177 (185)
+++.+..
T Consensus 148 ~~i~~~~ 154 (591)
T TIGR00437 148 DAIRKAI 154 (591)
T ss_pred HHHHHHh
Confidence 9998754
No 203
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=4.7e-20 Score=126.86 Aligned_cols=158 Identities=19% Similarity=0.281 Sum_probs=110.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEE--EEEcCeEEEEEEcCC----------chhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKT--VTYQKYTLNIWDVGG----------QRTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g----------~~~~~~~~~~ 79 (185)
....+-|+++|.+|+|||||||+|++.+ ....+.|+|.++.. +.+++ .+.++|.|| .+.+..+...
T Consensus 21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC-cEEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 5567899999999999999999999965 57788888866654 34443 389999999 4445556666
Q ss_pred hhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH----HHHhcCcccccCccc
Q 029920 80 YFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE----IAKVLNLEAMDKTRH 152 (185)
Q Consensus 80 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~ 152 (185)
|++ +..++++++|+..+-.- ......+++.+ .++|+++++||+|.....+... +...+...... ..
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~--~D~em~~~l~~---~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~--~~ 172 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKD--LDREMIEFLLE---LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPD--DQ 172 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcH--HHHHHHHHHHH---cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCc--cc
Confidence 764 35788999999874322 22222333333 3899999999999877544432 22222221111 11
Q ss_pred eEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 153 WKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
+ ++.+|+..+.|++++.+.|.+.+..
T Consensus 173 ~-~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 173 W-VVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred e-EEEEecccccCHHHHHHHHHHHhhc
Confidence 1 7889999999999999999887754
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.85 E-value=7e-20 Score=147.47 Aligned_cols=157 Identities=21% Similarity=0.259 Sum_probs=113.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC--CCccc-----------------ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHH
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE--DTSVI-----------------SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW 77 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~--~~~~~-----------------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 77 (185)
.+|+++|+.++|||||+++|... .+... ..|.......+.+++..+++|||||+.+|....
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 47999999999999999998752 22111 123333444578889999999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCcccc-cCccce
Q 029920 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNLEAM-DKTRHW 153 (185)
Q Consensus 78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~-~~~~~~ 153 (185)
..+++.+|++++|+|+.+. .......++..... .++|+++++||+|+...... .++...+..... .....+
T Consensus 82 ~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~ 156 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDF 156 (594)
T ss_pred HHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccC
Confidence 9999999999999999873 23444555555544 36899999999998654322 222232221111 112457
Q ss_pred EEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920 154 KIVGCSAYTGE----------GLLEGFDWLVQDIA 178 (185)
Q Consensus 154 ~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (185)
|++++||++|. |++.+++.+.+.+.
T Consensus 157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP 191 (594)
T TIGR01394 157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP 191 (594)
T ss_pred cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence 89999999996 79999999998775
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.85 E-value=2e-20 Score=133.39 Aligned_cols=147 Identities=16% Similarity=0.153 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcc----------------------------------cccCcceEEEEEEEcCeEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSV----------------------------------ISPTLGFNIKTVTYQKYTLN 63 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~~~~~~ 63 (185)
+|+++|++|+|||||+++|....-.. ...|.......+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 58999999999999999986432211 11122233444566788999
Q ss_pred EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHh
Q 029920 64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKV 141 (185)
Q Consensus 64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~ 141 (185)
++||||++.+.......+..+|++++|+|++++..-. ... ...+.... ...++|+|+||+|+...... ..+...
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~-~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~i~~~ 156 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRR-HSYILSLL--GIRHVVVAVNKMDLVDYSEEVFEEIVAD 156 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHH-HHHHHHHc--CCCcEEEEEEchhcccCCHHHHHHHHHH
Confidence 9999999888776777789999999999998753211 111 12222221 12457889999998653221 111111
Q ss_pred cCc--ccccCccceEEEeecccCCCCHHHH
Q 029920 142 LNL--EAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 142 ~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+.. ..+. ....+++++||++|.|+++.
T Consensus 157 ~~~~~~~~~-~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 157 YLAFAAKLG-IEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHcC-CCCceEEEEeCCCCCCCccC
Confidence 111 0111 12457999999999999753
No 206
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.85 E-value=4.9e-20 Score=143.26 Aligned_cols=161 Identities=20% Similarity=0.183 Sum_probs=104.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc------ccCcceEEEEEEE---------------------c-----C
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------SPTLGFNIKTVTY---------------------Q-----K 59 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------~~t~~~~~~~~~~---------------------~-----~ 59 (185)
+.++.++|+++|+.++|||||+.+|.+...... ..|.........+ + .
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 467789999999999999999999976422111 1122111100000 0 2
Q ss_pred eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---
Q 029920 60 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT--- 136 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~--- 136 (185)
..+.+|||||++.+..........+|++++|+|++++.........+.. +... ...|+++|+||+|+.+.....
T Consensus 85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~-l~~~--~i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA-LDII--GIKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH-HHHc--CCCcEEEEEEeeccccchhHHHHH
Confidence 5799999999998887766667788999999999964311112222222 2221 124689999999997643322
Q ss_pred -HHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 137 -EIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
++...+... .....+++++||++|.|++++++.|.+.+.
T Consensus 162 ~~i~~~l~~~---~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 162 EQIKEFVKGT---VAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred HHHHHHhccc---cCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 122211110 113578999999999999999999988764
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.84 E-value=4.7e-20 Score=143.37 Aligned_cols=161 Identities=19% Similarity=0.148 Sum_probs=104.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc------cCcceEEEE--------------E------EE------cCeE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS------PTLGFNIKT--------------V------TY------QKYT 61 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~------~t~~~~~~~--------------~------~~------~~~~ 61 (185)
...++|+++|+.++|||||+++|.+....... -|....... + +. ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 46789999999999999999999764331110 011111000 0 01 1467
Q ss_pred EEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh
Q 029920 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV 141 (185)
Q Consensus 62 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 141 (185)
+.++|+||++.+...+......+|++++|+|+++........+.+..+ ... ...|+++++||+|+.+.....+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~--gi~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EII--GIKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHc--CCCeEEEEEEccccCCHHHHHHHHHH
Confidence 999999999999888888888999999999999643112222333322 221 13579999999999764322111111
Q ss_pred cCccccc--CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 142 LNLEAMD--KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 142 ~~~~~~~--~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+.. .+. ....++++++||++|.|+++++++|.+.+.
T Consensus 159 i~~-~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 159 IKE-FVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred HHh-hhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 111 011 113578999999999999999999988654
No 208
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.84 E-value=1.1e-19 Score=131.57 Aligned_cols=156 Identities=19% Similarity=0.194 Sum_probs=107.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc--------------c-------cccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS--------------V-------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 76 (185)
+|+++|+.|+|||||+++|....-. . ...+.......+.+++.++.+|||||+..+...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 5899999999999999998643110 0 011222344556788899999999999999888
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH---HHHHHhcCc---------
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP---TEIAKVLNL--------- 144 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~--------- 144 (185)
+..+++.+|++++|+|+++.... ....++..... .++|+++++||+|+...... .++...++.
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~~p~ 155 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQKVG 155 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEECCc
Confidence 89999999999999999985433 22333333322 37899999999998753211 111111110
Q ss_pred ---------------------------------ccc-------------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 145 ---------------------------------EAM-------------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 145 ---------------------------------~~~-------------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
... ....-+|++..||.++.|+..+++.+.+.+.
T Consensus 156 ~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~~~p 235 (237)
T cd04168 156 LAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITKLFP 235 (237)
T ss_pred EeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHHhcC
Confidence 000 0124568888999999999999999988763
No 209
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.84 E-value=1.8e-19 Score=121.45 Aligned_cols=156 Identities=24% Similarity=0.374 Sum_probs=123.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc----------c---cCcceEEEEEEEcC-eEEEEEEcCCchhhHHHHH
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI----------S---PTLGFNIKTVTYQK-YTLNIWDVGGQRTIRSYWR 78 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~----------~---~t~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~ 78 (185)
.....||+|.|+-++||||++.++..+..... . .|....+..+.+.+ ..+-+++||||++|..+|.
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHH
Confidence 45678999999999999999999988775211 1 12223344445544 8899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+++++.+.++++|.+++..+ . ...+..++.... .+|++|.+||.|+.+...++.+.+.+..+. ...+++++
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~-a~~ii~f~~~~~--~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~----~~~~vi~~ 158 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-H-AEEIIDFLTSRN--PIPVVVAINKQDLFDALPPEKIREALKLEL----LSVPVIEI 158 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-H-HHHHHHHHhhcc--CCCEEEEeeccccCCCCCHHHHHHHHHhcc----CCCceeee
Confidence 999999999999999998887 2 233444444432 299999999999999999999988887643 36789999
Q ss_pred cccCCCCHHHHHHHHHHH
Q 029920 159 SAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~ 176 (185)
+|.++.+..+.++.+...
T Consensus 159 ~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 159 DATEGEGARDQLDVLLLK 176 (187)
T ss_pred ecccchhHHHHHHHHHhh
Confidence 999999999988877655
No 210
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.84 E-value=6.8e-20 Score=131.62 Aligned_cols=153 Identities=21% Similarity=0.180 Sum_probs=98.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCccc-----------------ccCc-------ceE-----------------EEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVI-----------------SPTL-------GFN-----------------IKTVT 56 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~-----------------~~t~-------~~~-----------------~~~~~ 56 (185)
||+++|+.++|||||++++....+... ..+. ++. ...+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999986444210 0011 010 02234
Q ss_pred EcCeEEEEEEcCCchhhHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920 57 YQKYTLNIWDVGGQRTIRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 134 (185)
..+..+.++||||++.+.......+. .+|++++|+|+..... ......+... .. .++|+++++||+|+.+...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l-~~---~~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLA-LA---LNIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEECccccCHHH
Confidence 45678999999999988766555554 6899999999986432 2222222222 22 3689999999999865433
Q ss_pred HHHHHH----hcCccc--------------------ccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 135 PTEIAK----VLNLEA--------------------MDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 135 ~~~~~~----~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
..+... .+.... .......|+|.+||.+|.|++++++.|..
T Consensus 156 ~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 156 LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 333222 222111 11223458999999999999999987653
No 211
>PRK10218 GTP-binding protein; Provisional
Probab=99.84 E-value=9e-20 Score=146.76 Aligned_cols=159 Identities=21% Similarity=0.271 Sum_probs=111.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC--CCCcc-------------cccCcceE----EEEEEEcCeEEEEEEcCCchhhHH
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING--EDTSV-------------ISPTLGFN----IKTVTYQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~--~~~~~-------------~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~~~ 75 (185)
+..+|+++|+.++|||||+++|.. +.+.. ...+.+.+ ...+.+++..+.+|||||+..|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 457899999999999999999986 22211 11223322 334567889999999999999999
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCc-ccccCcc
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNL-EAMDKTR 151 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~-~~~~~~~ 151 (185)
.+..+++.+|++++|+|+.+... ......+..... .++|.++++||+|+....... ++...+.. .......
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 99999999999999999987432 223333343333 368899999999987553322 23333221 1111224
Q ss_pred ceEEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920 152 HWKIVGCSAYTGE----------GLLEGFDWLVQDIA 178 (185)
Q Consensus 152 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (185)
.+|++.+||++|. ++..+++.|.+.+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP 195 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP 195 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence 5889999999998 58888888887764
No 212
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.84 E-value=1.2e-19 Score=124.72 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=97.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEE--EEEcCeEEEEEEcCCchh----------hHHHHHhhhc--
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKT--VTYQKYTLNIWDVGGQRT----------IRSYWRNYFE-- 82 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~-- 82 (185)
.|+++|++|+|||||++++.++.. +...++.+.+... +..+ ..+.++||||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVN-DKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENR 79 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEcc-CeEEEecCCCccccccCHHHHHHHHHHHHHHHHhC
Confidence 379999999999999999995444 3444554433322 2233 3899999999432 3333344443
Q ss_pred -CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 83 -QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 83 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
..+++++++|..+..+... ..+...+.. .+.|+++++||+|+........................+++++||+
T Consensus 80 ~~~~~~~~v~d~~~~~~~~~--~~~~~~l~~---~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~ 154 (170)
T cd01876 80 ENLKGVVLLIDSRHGPTEID--LEMLDWLEE---LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL 154 (170)
T ss_pred hhhhEEEEEEEcCcCCCHhH--HHHHHHHHH---cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence 4578899999986532221 111222222 2589999999999865433333332222111102245678999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029920 162 TGEGLLEGFDWLVQD 176 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~ 176 (185)
++.++++++++|.+.
T Consensus 155 ~~~~~~~l~~~l~~~ 169 (170)
T cd01876 155 KGQGIDELRALIEKW 169 (170)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999998875
No 213
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.83 E-value=1.9e-19 Score=130.30 Aligned_cols=169 Identities=21% Similarity=0.243 Sum_probs=114.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCchh------------hHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQRT------------IRS 75 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~~------------~~~ 75 (185)
+..+.++|+|+|.||+|||||.|.+.|.+....+....++.. .+..+..++.++||||.-. +.+
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 356678999999999999999999999999877765554444 3455779999999999322 112
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-----------------HHHH
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-----------------PTEI 138 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-----------------~~~~ 138 (185)
.....+..+|.+++|+|++++...-. -..+..+-.+ .++|-++|.||.|...... ..++
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v 223 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV 223 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence 23345678999999999996432221 1112222222 2689999999999764311 1112
Q ss_pred HHhcCcc----cccCccce----EEEeecccCCCCHHHHHHHHHHHHhhhcccC
Q 029920 139 AKVLNLE----AMDKTRHW----KIVGCSAYTGEGLLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 139 ~~~~~~~----~~~~~~~~----~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~~~ 184 (185)
.+.+... .+...++| .+|.+||++|.|++++-++|+....+.-|-+
T Consensus 224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 2222211 11112233 3799999999999999999999988876654
No 214
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.83 E-value=4.7e-20 Score=132.45 Aligned_cols=146 Identities=21% Similarity=0.204 Sum_probs=94.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC--c--------------------------------ccccCcceEEEEEEEcCeEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT--S--------------------------------VISPTLGFNIKTVTYQKYTLN 63 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~~~~~~ 63 (185)
+|+++|+.++|||||+.+|....- . ....|.......+.+++..+.
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 589999999999999999842110 0 001133334445677889999
Q ss_pred EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCccc---H---HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-C--
Q 029920 64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRR---L---DDCKMELDNLLKEERLSGASLLILANKQDINGAL-T-- 134 (185)
Q Consensus 64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~-- 134 (185)
++||||+..+.......+..+|++++|+|+++... + ......+.. ... ....|+++++||+|+.... .
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~iiivvNK~Dl~~~~~~~~ 157 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALL-ART--LGVKQLIVAVNKMDDVTVNWSEE 157 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHH-HHH--cCCCeEEEEEEccccccccccHH
Confidence 99999998888777777889999999999998421 1 112222221 121 1236899999999987421 1
Q ss_pred -HHHHHHhc----CcccccCccceEEEeecccCCCCHH
Q 029920 135 -PTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 135 -~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
..++...+ ...... ...++++++||++|.|++
T Consensus 158 ~~~~i~~~l~~~l~~~~~~-~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 158 RYDEIKKELSPFLKKVGYN-PKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHcCCC-cCCceEEEeecCcCCCCC
Confidence 12222222 111111 135889999999999986
No 215
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.83 E-value=2.1e-19 Score=144.65 Aligned_cols=157 Identities=22% Similarity=0.238 Sum_probs=103.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----cCcceEEEEEEEc----C-------e-----EEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTYQ----K-------Y-----TLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~~----~-------~-----~~~~~D~~g~~ 71 (185)
..+++.|+++|++|+|||||+++|.+....... .+.+......... + . .+.+|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 345678999999999999999999876553222 2333222111110 0 1 26899999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--------------
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-------------- 134 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-------------- 134 (185)
.|..++...+..+|++++|+|+++ +.++..+. .+.. .++|+++++||+|+.....
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~-----~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~ 154 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAIN-----ILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQ 154 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH-----HHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhh
Confidence 999988888899999999999997 44444322 1222 3789999999999852110
Q ss_pred HHH-----------HHHhcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 135 PTE-----------IAKVLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 135 ~~~-----------~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
... +...+....+ ......+++++||++|.|++++++.+....
T Consensus 155 ~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 155 SQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 000 1111111111 112457899999999999999998886544
No 216
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.83 E-value=3.6e-19 Score=116.27 Aligned_cols=161 Identities=21% Similarity=0.359 Sum_probs=119.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHh-CCCCc--ccccCcc-eEEEEEEEc---CeEEEEEEcCCchhh-HHHHHhhhcCCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKIN-GEDTS--VISPTLG-FNIKTVTYQ---KYTLNIWDVGGQRTI-RSYWRNYFEQTD 85 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~-~~~~~--~~~~t~~-~~~~~~~~~---~~~~~~~D~~g~~~~-~~~~~~~~~~~d 85 (185)
.+..||+|+|..++|||++++.|. ++..+ .+.+|+. +....++.+ ...+.++||.|.... ..+-.+|+..+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 345799999999999999999965 44443 4456665 333334332 258999999996555 567788999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
++++||+..+++||+...-.-..+-+......+|++|++||+|+.++... .+... .++....+..+++++.+..
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~-----~Wa~rEkvkl~eVta~dR~ 161 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQ-----IWAKREKVKLWEVTAMDRP 161 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHH-----HHHhhhheeEEEEEeccch
Confidence 99999999999999987654445544545567999999999999654222 12222 2333356788999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
.+-+.|..+...+.+
T Consensus 162 sL~epf~~l~~rl~~ 176 (198)
T KOG3883|consen 162 SLYEPFTYLASRLHQ 176 (198)
T ss_pred hhhhHHHHHHHhccC
Confidence 999999999887753
No 217
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.83 E-value=1.8e-19 Score=145.72 Aligned_cols=158 Identities=20% Similarity=0.154 Sum_probs=105.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc------cccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV------ISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~------~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+-|+++|+.++|||||+++|.+..... ...|+......+.. ++..+.+|||||++.+.......+..+|++++
T Consensus 1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 358999999999999999999754321 12333333333333 45678999999999998777788899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHHHHHhcCcccc-cCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|+++... ....+.+ .++... ++| +++|+||+|+.+..........+..... ......+++++||++|.|++
T Consensus 81 VVda~eg~~-~qT~ehl-~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 81 VVACDDGVM-AQTREHL-AILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEECCCCCc-HHHHHHH-HHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 999987321 2222222 223322 445 6899999999754332222222211100 01134689999999999999
Q ss_pred HHHHHHHHHHhh
Q 029920 168 EGFDWLVQDIAS 179 (185)
Q Consensus 168 ~l~~~l~~~~~~ 179 (185)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876544
No 218
>COG2262 HflX GTPases [General function prediction only]
Probab=99.83 E-value=8.3e-19 Score=131.86 Aligned_cols=161 Identities=22% Similarity=0.217 Sum_probs=120.0
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCC---cccccCcceEEEEEEEc-CeEEEEEEcCC---------chhhHH
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT---SVISPTLGFNIKTVTYQ-KYTLNIWDVGG---------QRTIRS 75 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~---~~~~~t~~~~~~~~~~~-~~~~~~~D~~g---------~~~~~~ 75 (185)
+.+....-+.|+++|-.|+|||||+|+|++... .....|...+.+.+... +..+.+-||.| .+.|++
T Consensus 185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFks 264 (411)
T COG2262 185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKS 264 (411)
T ss_pred hhhcccCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHH
Confidence 344456678999999999999999999997665 35667888888888776 58999999999 344555
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI 155 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
..+. ...+|+++.|+|+++|.-.+ -......++.......+|+|+|.||+|+............. . ...
T Consensus 265 TLEE-~~~aDlllhVVDaSdp~~~~-~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~--------~-~~~ 333 (411)
T COG2262 265 TLEE-VKEADLLLHVVDASDPEILE-KLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERG--------S-PNP 333 (411)
T ss_pred HHHH-hhcCCEEEEEeecCChhHHH-HHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhc--------C-CCe
Confidence 5444 35799999999999984433 33445666666666679999999999986653311111111 1 148
Q ss_pred EeecccCCCCHHHHHHHHHHHHhhh
Q 029920 156 VGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+.+||++|.|++.|.+.|.+.+...
T Consensus 334 v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 334 VFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EEEEeccCcCHHHHHHHHHHHhhhc
Confidence 9999999999999999999988744
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.82 E-value=3.4e-19 Score=138.19 Aligned_cols=162 Identities=17% Similarity=0.136 Sum_probs=105.0
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCC-------CCc------------ccccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGE-------DTS------------VISPTLGFNIKTVTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~ 70 (185)
..+.++.++|+++|++++|||||+++|++. ... ...-|.......+..++.++.++||||+
T Consensus 6 ~~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 6 FERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred cCCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 345677899999999999999999999852 100 0111222223334446678999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCCCCCCCHH-----HHHHhcCc
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDINGALTPT-----EIAKVLNL 144 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~~-----~~~~~~~~ 144 (185)
+++.......+..+|++++|+|+.+... ....+.+.... ..++|.+ +++||+|+.+..... ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~----~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~ 160 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLAR----QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSK 160 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHH----HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHH
Confidence 9888777777889999999999987422 22223333222 2257755 679999996432221 12222211
Q ss_pred ccccCccceEEEeecccCCC----------CHHHHHHHHHHHH
Q 029920 145 EAMDKTRHWKIVGCSAYTGE----------GLLEGFDWLVQDI 177 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 177 (185)
..+.. ...+++++||.+|. ++.++++.|.+.+
T Consensus 161 ~~~~~-~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 161 YDFPG-DDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred cCCCc-CceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 11111 24789999999984 5778888877754
No 220
>PRK12736 elongation factor Tu; Reviewed
Probab=99.82 E-value=4.5e-19 Score=137.41 Aligned_cols=161 Identities=18% Similarity=0.143 Sum_probs=105.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCC----------c---------ccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT----------S---------VISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~----------~---------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 72 (185)
+.+..++|+++|+.++|||||+++|++... . ....|.......+..++..+.++||||+++
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHH
Confidence 366789999999999999999999976311 0 111122232333444567899999999999
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPT-----EIAKVLNLEA 146 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~-----~~~~~~~~~~ 146 (185)
+.......+..+|++++|+|+.+... ....+.+..... .++| +|+++||+|+.+..... ++...+....
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~ 162 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence 88777777889999999999986422 222233333222 2577 67899999986432222 1222221111
Q ss_pred ccCccceEEEeecccCCC--------CHHHHHHHHHHHHh
Q 029920 147 MDKTRHWKIVGCSAYTGE--------GLLEGFDWLVQDIA 178 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~~ 178 (185)
+.. ...+++++||++|. +++++++.+.+.+.
T Consensus 163 ~~~-~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 163 FPG-DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred CCc-CCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 111 34789999999983 57888888877653
No 221
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.1e-19 Score=141.63 Aligned_cols=154 Identities=23% Similarity=0.256 Sum_probs=109.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhh------HHHHHhhh--cC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI------RSYWRNYF--EQ 83 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 83 (185)
+..+|+++|.||+|||||.|+|+|.+.. ..+-|.+-....+...+.+++++|+||.-+. ....++++ ..
T Consensus 2 ~~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~ 81 (653)
T COG0370 2 KKLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGK 81 (653)
T ss_pred CcceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCC
Confidence 3467999999999999999999998763 3344555555567778889999999993322 22334444 46
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
.|+++-|+|+++.+.. .....++++. +.|+++++|++|..+....+-..+ ++.+..++|++++||++|
T Consensus 82 ~D~ivnVvDAtnLeRn---LyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~ID~~-----~L~~~LGvPVv~tvA~~g 149 (653)
T COG0370 82 PDLIVNVVDATNLERN---LYLTLQLLEL----GIPMILALNMIDEAKKRGIRIDIE-----KLSKLLGVPVVPTVAKRG 149 (653)
T ss_pred CCEEEEEcccchHHHH---HHHHHHHHHc----CCCeEEEeccHhhHHhcCCcccHH-----HHHHHhCCCEEEEEeecC
Confidence 7999999999985432 2333344333 799999999999765433221111 222236789999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|++++...+.+...++
T Consensus 150 ~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 150 EGLEELKRAIIELAESK 166 (653)
T ss_pred CCHHHHHHHHHHhcccc
Confidence 99999999998765543
No 222
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.81 E-value=5.1e-19 Score=126.69 Aligned_cols=165 Identities=22% Similarity=0.310 Sum_probs=108.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEE-cCeEEEEEEcCCchhhHH-----HHHhhhcCCCEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRS-----YWRNYFEQTDGL 87 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~~ 87 (185)
||+++|+.+|||||+.+.+.++..+ ...+|...+...+.. ++..+++||.||+..+-. .....+++++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~L 80 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVL 80 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCEE
Confidence 7999999999999999999887654 445788788777764 567999999999875543 356778999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHH----hcCcccccC-ccceEEEeecc
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAK----VLNLEAMDK-TRHWKIVGCSA 160 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~Sa 160 (185)
|||+|+.+.+ +.....++...+... ..++..+-|+++|+|+..+....+... .+....... ...+.++.||.
T Consensus 81 IyV~D~qs~~-~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI 159 (232)
T PF04670_consen 81 IYVFDAQSDD-YDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI 159 (232)
T ss_dssp EEEEETT-ST-CHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred EEEEEccccc-HHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence 9999999543 444444555544432 356899999999999865433322221 111111111 12488999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcccC
Q 029920 161 YTGEGLLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~~ 184 (185)
.+. .+.+.|..+++.+.++...+
T Consensus 160 ~D~-Sly~A~S~Ivq~LiP~~~~l 182 (232)
T PF04670_consen 160 WDE-SLYEAWSKIVQKLIPNLSTL 182 (232)
T ss_dssp TST-HHHHHHHHHHHTTSTTHCCC
T ss_pred cCc-HHHHHHHHHHHHHcccHHHH
Confidence 995 79999999999887776654
No 223
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.80 E-value=8.7e-19 Score=127.45 Aligned_cols=152 Identities=28% Similarity=0.361 Sum_probs=106.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCe-EEEEEEcCCchh-------hHHHHHhhhcCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKY-TLNIWDVGGQRT-------IRSYWRNYFEQT 84 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~-~~~~~D~~g~~~-------~~~~~~~~~~~~ 84 (185)
...|.++|.||+|||||++++.+.+.. ....|.......+.+++. ++.+-|.||.-+ +.-..-.+++.|
T Consensus 196 iadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 196 IADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred ecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence 346899999999999999999876652 222344444445666654 499999999432 334455678899
Q ss_pred CEEEEEEeCCCc---ccHHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEee
Q 029920 85 DGLVWVVDSSDL---RRLDDCKMELDNLLKE-ERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 85 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+.++||+|++.+ ..++.....+.++-.+ ....+.|.++|+||+|+.+.+.. +++...+ .+..++++
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~l--------q~~~V~pv 347 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRL--------QNPHVVPV 347 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHHHHHHHHHc--------CCCcEEEe
Confidence 999999999987 6666655544444332 23457899999999998643222 2333322 22368999
Q ss_pred cccCCCCHHHHHHHHHH
Q 029920 159 SAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~ 175 (185)
||+.+++++++++.|..
T Consensus 348 sA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeccccchHHHHHHHhh
Confidence 99999999999988764
No 224
>CHL00071 tufA elongation factor Tu
Probab=99.80 E-value=1.3e-18 Score=135.41 Aligned_cols=148 Identities=20% Similarity=0.156 Sum_probs=97.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------------ccccCcceE----EEEEEEcCeEEEEEEcCCchh
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------------VISPTLGFN----IKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~ 72 (185)
..+..++|+++|++++|||||+++|++.... ......+.+ ...+..++.++.++||||+..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence 3567899999999999999999999864110 000112222 223445678899999999998
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPT-----EIAKVLNLEA 146 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~-----~~~~~~~~~~ 146 (185)
+.......+..+|++++|+|+...-. ....+.+... .. .++| +|+++||+|+.+..... ++...+....
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~-~~---~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~ 162 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLA-KQ---VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYD 162 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHH-HH---cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 88777788899999999999986422 2222333322 22 2577 77899999997543221 2222222211
Q ss_pred ccCccceEEEeecccCCCC
Q 029920 147 MDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~ 165 (185)
+.. ..+|++++||.+|.|
T Consensus 163 ~~~-~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 163 FPG-DDIPIVSGSALLALE 180 (409)
T ss_pred CCC-CcceEEEcchhhccc
Confidence 111 357899999999874
No 225
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=2.2e-18 Score=135.69 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=99.9
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------------c----cccCcceEEEEEEEcCeEEEEEEcCC
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------------V----ISPTLGFNIKTVTYQKYTLNIWDVGG 69 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------------~----~~~t~~~~~~~~~~~~~~~~~~D~~g 69 (185)
++...++.++|+++|++++|||||+++|.+.... . ..-|.......+..++..+.++|+||
T Consensus 74 ~~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPG 153 (478)
T PLN03126 74 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPG 153 (478)
T ss_pred hhhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCC
Confidence 3444677899999999999999999999852110 0 11122223334556778999999999
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcC
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLN 143 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~ 143 (185)
++.+.......+..+|++++|+|+.+... ....+.+..... .++| +++++||+|+.+.... + ++...+.
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~ 228 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRELLS 228 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999987432 222333333222 2577 7889999998753221 1 1222222
Q ss_pred cccccCccceEEEeecccCCCC
Q 029920 144 LEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
...+.. ...+++++|+.++.|
T Consensus 229 ~~g~~~-~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 229 SYEFPG-DDIPIISGSALLALE 249 (478)
T ss_pred hcCCCc-CcceEEEEEcccccc
Confidence 211222 468999999998853
No 226
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.80 E-value=6.9e-18 Score=124.81 Aligned_cols=110 Identities=19% Similarity=0.207 Sum_probs=80.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc--c-------------------cccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS--V-------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~--~-------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 76 (185)
+|+++|++|+|||||+++|...... . ...+.......+.+++..+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 5899999999999999998643211 0 012233344556778899999999999988888
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..++..+|++++|+|+++...... ...+... ...++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~-~~~~~~~----~~~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGT-EKLWEFA----DEAGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCccCCC
Confidence 8889999999999999997544332 2222322 2236899999999998653
No 227
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=5.8e-18 Score=123.96 Aligned_cols=155 Identities=18% Similarity=0.156 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCc-----hhhHHH---HHhhh-c
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQ-----RTIRSY---WRNYF-E 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~-----~~~~~~---~~~~~-~ 82 (185)
..++|+|.|.||+|||||++.+++.+.. ....|.+.....++.+...++++||||. ++++.. ....+ .
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~h 246 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRH 246 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHH
Confidence 5689999999999999999999998774 4456888889999999999999999992 122211 11122 2
Q ss_pred CCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 83 QTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 83 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
-.++++|++|.+. ..+.+.....+..+.... +.|+++|+||+|..+....+++...+.... ......+++
T Consensus 247 l~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~-----~~~~~~~~~ 318 (346)
T COG1084 247 LAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLEEIEASVLEEG-----GEEPLKISA 318 (346)
T ss_pred hcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHHHHHHHHHhhc-----cccccceee
Confidence 3588999999985 567777777777776654 489999999999987766666665544322 222567888
Q ss_pred cCCCCHHHHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~ 177 (185)
..+.+++.+-..+....
T Consensus 319 ~~~~~~d~~~~~v~~~a 335 (346)
T COG1084 319 TKGCGLDKLREEVRKTA 335 (346)
T ss_pred eehhhHHHHHHHHHHHh
Confidence 88888888877776654
No 228
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=4.2e-18 Score=131.84 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=113.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcceEEEEEEE---cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLGFNIKTVTY---QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+++-|+++|+-.-|||||+..+.+....... -|-.+.-..+.. ....+.++||||++.|..++.....-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 45678999999999999999999887774322 233333334444 346899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc---cCccceEEEeecccCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM---DKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~~ 164 (185)
+||+|++|.-.-+. .+.+.+....+.|++|++||+|+.+. ++......+....+ .......++++||++|.
T Consensus 83 ILVVa~dDGv~pQT-----iEAI~hak~a~vP~iVAiNKiDk~~~-np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 83 ILVVAADDGVMPQT-----IEAINHAKAAGVPIVVAINKIDKPEA-NPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEEccCCcchhH-----HHHHHHHHHCCCCEEEEEecccCCCC-CHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 99999998432222 11122223448999999999999865 34444433332221 11245789999999999
Q ss_pred CHHHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQDI 177 (185)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (185)
|+++|+..+.-..
T Consensus 157 Gi~eLL~~ill~a 169 (509)
T COG0532 157 GIDELLELILLLA 169 (509)
T ss_pred CHHHHHHHHHHHH
Confidence 9999998876543
No 229
>PRK00049 elongation factor Tu; Reviewed
Probab=99.79 E-value=3.7e-18 Score=132.32 Aligned_cols=161 Identities=18% Similarity=0.147 Sum_probs=104.7
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.+.+..++|+++|+.++|||||+++|++.... ....|.......+..++.++.++||||+.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~ 86 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA 86 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence 34577899999999999999999999762110 11112222233344467789999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCCCCCCCH-H----HHHHhcCcc
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDINGALTP-T----EIAKVLNLE 145 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~~~~~~~-~----~~~~~~~~~ 145 (185)
++.......+..+|++++|+|+.+... ......+... .. .++|.+ +++||+|+.+.... + ++...+...
T Consensus 87 ~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~-~~---~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 87 DYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLA-RQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHH-HH---cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 888777777899999999999987422 2222333322 22 257875 68999998643221 1 222222211
Q ss_pred cccCccceEEEeecccCCC----------CHHHHHHHHHHHH
Q 029920 146 AMDKTRHWKIVGCSAYTGE----------GLLEGFDWLVQDI 177 (185)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~----------~i~~l~~~l~~~~ 177 (185)
.+. ....+++++||+++. ++.++++.|.+.+
T Consensus 162 ~~~-~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 162 DFP-GDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred CCC-ccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 111 145789999999875 4677777777654
No 230
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.79 E-value=5.3e-18 Score=124.97 Aligned_cols=110 Identities=20% Similarity=0.131 Sum_probs=80.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH
Q 029920 18 RILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY 76 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 76 (185)
+|+++|++|+|||||+++|.... .. ...-|.......+.+++.++.++||||+..+...
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 58999999999999999985311 10 0111333444567788999999999999988888
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+++.+|++++|+|+.+...-. ....+... ...++|+++++||+|+...
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~----~~~~~p~ivviNK~D~~~a 131 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQA----DRYNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence 899999999999999998743222 12222222 2236899999999998754
No 231
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1e-18 Score=118.08 Aligned_cols=158 Identities=18% Similarity=0.342 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE---c-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY---Q-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~---~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..++++++|+.|.||||++++.....+. .+.+|.+........ . ...|..|||+|++.+......|+-+....++
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 4789999999999999999998888886 577888876665433 2 3899999999999999888888888999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
++|++.+-++.+...|.+++.+... ++|+++++||.|......... .. .+....+..++++||+.+.|.+.-
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~--NiPiv~cGNKvDi~~r~~k~k-----~v-~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE--NIPIVLCGNKVDIKARKVKAK-----PV-SFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc--CCCeeeeccceeccccccccc-----cc-eeeecccceeEEeecccccccccc
Confidence 9999999999999999999988654 799999999999765431111 11 111226778999999999999999
Q ss_pred HHHHHHHHhhh
Q 029920 170 FDWLVQDIASR 180 (185)
Q Consensus 170 ~~~l~~~~~~~ 180 (185)
|-|+.+.+...
T Consensus 161 Fl~LarKl~G~ 171 (216)
T KOG0096|consen 161 FLWLARKLTGD 171 (216)
T ss_pred hHHHhhhhcCC
Confidence 99999887543
No 232
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.78 E-value=6.3e-18 Score=131.16 Aligned_cols=147 Identities=17% Similarity=0.126 Sum_probs=94.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCC------C------C-c------ccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGE------D------T-S------VISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~------~------~-~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 72 (185)
+.++.++|+++|+.++|||||+++|.+. . . . ....|.......+..++..+.++||||++.
T Consensus 8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence 3567899999999999999999999732 0 0 0 011233333333444667899999999999
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQDINGALTPT-----EIAKVLNLEA 146 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~~~~~~~~-----~~~~~~~~~~ 146 (185)
|..........+|++++|+|+.+... ....+.+...... ++|. ++++||+|+.+..... ++...+....
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~-~qt~e~l~~~~~~----gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~ 162 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPM-PQTREHILLARQV----GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYD 162 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc----CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcC
Confidence 88777777788999999999987322 2222333333222 5665 4789999987532211 1222222111
Q ss_pred ccCccceEEEeecccCCC
Q 029920 147 MDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~ 164 (185)
... ..++++++||.++.
T Consensus 163 ~~~-~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 163 FPG-DDTPIIRGSALKAL 179 (394)
T ss_pred CCc-cCccEEECcccccc
Confidence 111 23789999999875
No 233
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=1e-17 Score=123.37 Aligned_cols=113 Identities=18% Similarity=0.220 Sum_probs=81.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC--cc-----------------------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT--SV-----------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~--~~-----------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.+|+++|++|+|||||+++|+...- .. ...+.......+.+++..+++|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 5799999999999999999863211 00 0112223444677889999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 134 (185)
.+......+++.+|++++|+|+++.... ....++.. . ...++|+++++||+|+.....
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~-~---~~~~~P~iivvNK~D~~~a~~ 140 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEV-C---RLRGIPIITFINKLDREGRDP 140 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHH-H---HhcCCCEEEEEECCccCCCCH
Confidence 8888778888999999999999875322 22222222 2 223789999999999876543
No 234
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.78 E-value=7.8e-18 Score=122.99 Aligned_cols=155 Identities=21% Similarity=0.182 Sum_probs=109.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCch-------hhHHHHHhhhc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQR-------TIRSYWRNYFE 82 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-------~~~~~~~~~~~ 82 (185)
++..-+++++|+|++|||||++.|++-+.. ....|.......+.+++.+++++|+||.- ..........+
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R 139 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVAR 139 (365)
T ss_pred ccCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeec
Confidence 456679999999999999999999987653 23345555566688999999999999832 12344556678
Q ss_pred CCCEEEEEEeCCCccc-HHHHHHHH----------------------------------------HHHHhcc--------
Q 029920 83 QTDGLVWVVDSSDLRR-LDDCKMEL----------------------------------------DNLLKEE-------- 113 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s-~~~~~~~~----------------------------------------~~~~~~~-------- 113 (185)
.||++++|+|+..... .+.+...+ ..++...
T Consensus 140 ~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~ 219 (365)
T COG1163 140 NADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVL 219 (365)
T ss_pred cCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEE
Confidence 9999999999985431 11111111 1111110
Q ss_pred ----------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 114 ----------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 114 ----------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
+...+|.++|.||+|+...+....+.... ..+.+||..+.|++++.+.|.+.+
T Consensus 220 Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~-----------~~v~isa~~~~nld~L~e~i~~~L 288 (365)
T COG1163 220 IREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKP-----------NSVPISAKKGINLDELKERIWDVL 288 (365)
T ss_pred EecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHHHHhcc-----------ceEEEecccCCCHHHHHHHHHHhh
Confidence 01147899999999997754444443322 579999999999999999999886
Q ss_pred h
Q 029920 178 A 178 (185)
Q Consensus 178 ~ 178 (185)
.
T Consensus 289 ~ 289 (365)
T COG1163 289 G 289 (365)
T ss_pred C
Confidence 3
No 235
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.78 E-value=1e-18 Score=120.16 Aligned_cols=128 Identities=29% Similarity=0.421 Sum_probs=85.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE---cCeEEEEEEcCCchhhHHHHHhh---hcCCCEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY---QKYTLNIWDVGGQRTIRSYWRNY---FEQTDGLV 88 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~~i 88 (185)
+...|+++|+.|+|||+|..+|..+............. .... .+..+.++|+||+++.+...... ...+.++|
T Consensus 2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~n~-~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~II 80 (181)
T PF09439_consen 2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMENNI-AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGII 80 (181)
T ss_dssp ---EEEEE-STTSSHHHHHHHHHHSS---B---SSEEE-ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccCCc-eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEE
Confidence 34679999999999999999999886654444433222 2222 34689999999999987655544 78899999
Q ss_pred EEEeCCC-cccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920 89 WVVDSSD-LRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTPTEIAKVLN 143 (185)
Q Consensus 89 ~v~d~~~-~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 143 (185)
||+|.+. ........+++..++.... ...+|++++.||.|+..+.....+...+.
T Consensus 81 fvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE 138 (181)
T PF09439_consen 81 FVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLE 138 (181)
T ss_dssp EEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHH
T ss_pred EEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHH
Confidence 9999974 5667778888888876543 34689999999999988766665555443
No 236
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.78 E-value=2.2e-18 Score=123.34 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=76.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCccc------------c------cCcceE----EEEEEE-----cCeEEEEEEcCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVI------------S------PTLGFN----IKTVTY-----QKYTLNIWDVGGQ 70 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~------------~------~t~~~~----~~~~~~-----~~~~~~~~D~~g~ 70 (185)
+|+++|+.|+|||||+++|+....... . ...+.+ ...+.+ ....+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 689999999999999999976433211 0 011111 111222 2478999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++++||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 9998888888999999999999987655432 222333222 258999999999975
No 237
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=2.9e-17 Score=130.87 Aligned_cols=115 Identities=17% Similarity=0.225 Sum_probs=82.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC--CCCcc------------c-----------ccCcceEEEEEEEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING--EDTSV------------I-----------SPTLGFNIKTVTYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~~------------~-----------~~t~~~~~~~~~~~~~~~~~~D~ 67 (185)
..+..+|+++|++|+|||||.++|.. +.... . ..+.......+.+++..+++|||
T Consensus 7 ~~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDT 86 (526)
T PRK00741 7 VAKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDT 86 (526)
T ss_pred hhcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEEC
Confidence 45677999999999999999999852 11100 0 01122233456778899999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
||+..+......+++.+|++++|+|+++.... .....+.. ....++|+++++||+|+...
T Consensus 87 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~----~~~~~iPiiv~iNK~D~~~a 146 (526)
T PRK00741 87 PGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEV----CRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred CCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHH----HHhcCCCEEEEEECCccccc
Confidence 99999988888889999999999999874322 22233322 22347999999999998654
No 238
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.77 E-value=4.7e-18 Score=133.24 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=100.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTY 57 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~ 57 (185)
..+..++|+++|+.++|||||+.+|+.. ... ....|.......+++
T Consensus 3 ~~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 3 KEKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 3567899999999999999999988541 100 011133334445667
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEeecCCCC
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGAS-LLILANKQDIN 130 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~ 130 (185)
++..+.++||||+++|.......+..+|++++|+|+.+.. .+ ....+.+... .. .++| +|+++||+|..
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~-~~---~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLA-FT---LGVKQMIVCINKMDDK 158 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHH-HH---cCCCeEEEEEEccccc
Confidence 7889999999999999988888899999999999998642 11 1223333322 22 2555 78999999953
Q ss_pred C----CCCHHHHH----HhcCcccccCccceEEEeecccCCCCHHH
Q 029920 131 G----ALTPTEIA----KVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 131 ~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
. ....+++. ..+....+.. ..++++++|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~-~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNP-EKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCc-ccceEEEeecccCCCccc
Confidence 2 11222222 2222211211 358999999999999864
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.77 E-value=1.4e-17 Score=137.39 Aligned_cols=115 Identities=20% Similarity=0.124 Sum_probs=87.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC--------------c-------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--------------S-------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.++..+|+++|+.|+|||||+++|....- . ....|.......+.+++..+.+|||||+.
T Consensus 5 ~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~ 84 (687)
T PRK13351 5 LMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHI 84 (687)
T ss_pred cccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcH
Confidence 34567999999999999999999864211 0 12234445555678889999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
++...+..+++.+|++++|+|+++....... ..+.... ..++|+++++||+|+...
T Consensus 85 df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~~~~~----~~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 85 DFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVWRQAD----RYGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHH----hcCCCEEEEEECCCCCCC
Confidence 9988899999999999999999986655432 2233322 236899999999998764
No 240
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.77 E-value=4.7e-18 Score=120.23 Aligned_cols=157 Identities=13% Similarity=0.200 Sum_probs=94.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc---eEEE--EEEE-cCeEEEEEEcCCchhhHHHH-----HhhhcC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG---FNIK--TVTY-QKYTLNIWDVGGQRTIRSYW-----RNYFEQ 83 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~---~~~~--~~~~-~~~~~~~~D~~g~~~~~~~~-----~~~~~~ 83 (185)
+++|+++|.+|+|||||+|+|++..... ...+.+ .+.. .+.. ....+.+|||||........ ...+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 4789999999999999999999865432 212212 1111 1111 12468999999965322212 222567
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---------HHHHHHhcCcc---ccc--C
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---------PTEIAKVLNLE---AMD--K 149 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---------~~~~~~~~~~~---~~~--~ 149 (185)
+|+++++.+. ++......+...+... +.|+++|+||+|+..... .++..+.+... ... .
T Consensus 81 ~d~~l~v~~~----~~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST----RFSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC----CCCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998887542 2333333333333332 689999999999853211 11212111110 010 1
Q ss_pred ccceEEEeeccc--CCCCHHHHHHHHHHHHhh
Q 029920 150 TRHWKIVGCSAY--TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 150 ~~~~~~~~~Sa~--~~~~i~~l~~~l~~~~~~ 179 (185)
....++|.+|+. .+.|+..+.+.+...+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~ 185 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA 185 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence 234578999999 579999999999998864
No 241
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.77 E-value=7e-18 Score=133.19 Aligned_cols=153 Identities=15% Similarity=0.138 Sum_probs=98.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--------------c----------------------ccCcceEEEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--------------I----------------------SPTLGFNIKTVT 56 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--------------~----------------------~~t~~~~~~~~~ 56 (185)
.+..++|+++|+.++|||||+++|+...-.. . .-|+......+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 5778999999999999999999985432110 0 012233344456
Q ss_pred EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--
Q 029920 57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-- 134 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-- 134 (185)
.++.++.++||||++.+.......+..+|++++|+|+.....-. .... ..+..... ..|+++++||+|+.+...
T Consensus 104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~q-t~~~-~~l~~~lg--~~~iIvvvNKiD~~~~~~~~ 179 (474)
T PRK05124 104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQ-TRRH-SFIATLLG--IKHLVVAVNKMDLVDYSEEV 179 (474)
T ss_pred cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCcccc-chHH-HHHHHHhC--CCceEEEEEeeccccchhHH
Confidence 67789999999999988766666679999999999998642111 1111 11122111 257899999999874321
Q ss_pred HHHHHHhcCc--ccccCccceEEEeecccCCCCHHHH
Q 029920 135 PTEIAKVLNL--EAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 135 ~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
..++...+.. .........+++++||++|.|++++
T Consensus 180 ~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 180 FERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 1222222211 0111113578999999999999764
No 242
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.77 E-value=3.7e-17 Score=106.14 Aligned_cols=103 Identities=22% Similarity=0.341 Sum_probs=71.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhh---------HHHHHhhhcCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTI---------RSYWRNYFEQT 84 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~~~ 84 (185)
+|+|+|.+|+|||||+|+|++......+ .|.......+.+++..+.++||||.... .......+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 6899999999999999999986543222 3444445566778899999999995321 11233344889
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK 126 (185)
|++++|+|+.++.. +.....+..+ . .+.|+++|+||
T Consensus 81 d~ii~vv~~~~~~~-~~~~~~~~~l----~-~~~~~i~v~NK 116 (116)
T PF01926_consen 81 DLIIYVVDASNPIT-EDDKNILREL----K-NKKPIILVLNK 116 (116)
T ss_dssp SEEEEEEETTSHSH-HHHHHHHHHH----H-TTSEEEEEEES
T ss_pred CEEEEEEECCCCCC-HHHHHHHHHH----h-cCCCEEEEEcC
Confidence 99999999877321 1122222222 2 47999999998
No 243
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.77 E-value=7.8e-18 Score=130.95 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc------------------------------------ccccCcceEEEEEEEcCe
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS------------------------------------VISPTLGFNIKTVTYQKY 60 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~~~~~ 60 (185)
++|+++|+.++|||||+++|+...-. ...-|.......+..++.
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~ 80 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR 80 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence 58999999999999999998532110 001123344445566778
Q ss_pred EEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHH
Q 029920 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEI 138 (185)
Q Consensus 61 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~ 138 (185)
.+.++||||++.|.......+..+|++++|+|+.....-+ ..+.+. +..... ..++++++||+|+.+.... .++
T Consensus 81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~-~~~~~~--~~~iivviNK~D~~~~~~~~~~~i 156 (406)
T TIGR02034 81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSY-IASLLG--IRHVVLAVNKMDLVDYDEEVFENI 156 (406)
T ss_pred EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHH-HHHHcC--CCcEEEEEEecccccchHHHHHHH
Confidence 9999999999998777777789999999999998643211 111111 222211 3468999999998653211 112
Q ss_pred HHhcCc--ccccCccceEEEeecccCCCCHHH
Q 029920 139 AKVLNL--EAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 139 ~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
...+.. .... ....+++++||++|.|+++
T Consensus 157 ~~~~~~~~~~~~-~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 157 KKDYLAFAEQLG-FRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHcC-CCCccEEEeecccCCCCcc
Confidence 222210 0111 1356899999999999975
No 244
>PLN03127 Elongation factor Tu; Provisional
Probab=99.77 E-value=1.2e-17 Score=130.77 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=102.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC------CCc-------------ccccCcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE------DTS-------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~------~~~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 73 (185)
.+..++|+++|+.++|||||+++|.+. ... ....|.......+..++.++.++||||+..+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f 137 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY 137 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence 567899999999999999999999632 110 0112333334445556789999999999988
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCHHH-HH----HhcCcccc
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTPTE-IA----KVLNLEAM 147 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~~~-~~----~~~~~~~~ 147 (185)
.......+..+|++++|+|+.+... ....+.+... .. .++| +|+++||+|+.+.....+ +. ..+....+
T Consensus 138 ~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~-~~---~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~ 212 (447)
T PLN03127 138 VKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLA-RQ---VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKF 212 (447)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHH-HH---cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCC
Confidence 7777777788999999999986432 2222222222 22 2678 578999999875322111 11 11111111
Q ss_pred cCccceEEEeeccc---CCCC-------HHHHHHHHHHHH
Q 029920 148 DKTRHWKIVGCSAY---TGEG-------LLEGFDWLVQDI 177 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~---~~~~-------i~~l~~~l~~~~ 177 (185)
.. ..+|++++||. ++.| +.++++.+.+.+
T Consensus 213 ~~-~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 213 PG-DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred CC-CcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 11 35788998876 4555 678888887765
No 245
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.77 E-value=1.3e-17 Score=130.82 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=99.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC--c--------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--S--------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~--------------------------------~~~~t~~~~~~~~~~~ 58 (185)
.++.++|+++|+.++|||||+.+|+...- . ...-|+......++.+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 56789999999999999999988742110 0 0011333444456667
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHH-------HHHHHHHHHHhccccCCC-eEEEEeecCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLD-------DCKMELDNLLKEERLSGA-SLLILANKQDIN 130 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~ 130 (185)
+..+.++|+||+++|.......+..+|++++|+|+++. .|+ ...+.+... . ..++ ++|+++||+|+.
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~---~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F---TLGVKQMICCCNKMDAT 158 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H---HcCCCcEEEEEEcccCC
Confidence 88999999999999999999999999999999999872 222 223322222 1 2256 578899999976
Q ss_pred CCC-C-------HHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 131 GAL-T-------PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 131 ~~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+.. . .+++...+....+.. ..++++++||.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~ei~~~l~~~g~~~-~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 159 TPKYSKARYDEIVKEVSSYLKKVGYNP-DKIPFVPISGFEGDNMIE 203 (447)
T ss_pred chhhhHHHHHHHHHHHHHHHHHcCCCc-ccceEEEEeccccccccc
Confidence 221 1 112222222211111 357899999999999853
No 246
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=1.2e-17 Score=127.85 Aligned_cols=166 Identities=22% Similarity=0.273 Sum_probs=113.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE----EEEcCeEEEEEEcCCchh--------hH-HHHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT----VTYQKYTLNIWDVGGQRT--------IR-SYWR 78 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~D~~g~~~--------~~-~~~~ 78 (185)
..+..++|+++|+||+|||||+|+|.+......+|..|++... ++.+++++.+.||+|..+ .. ...+
T Consensus 264 ~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 264 RLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred HhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHH
Confidence 3556699999999999999999999999999988877766554 567899999999999654 11 1234
Q ss_pred hhhcCCCEEEEEEeCC--CcccHHHHHHHHHHHHhcc-----ccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCc
Q 029920 79 NYFEQTDGLVWVVDSS--DLRRLDDCKMELDNLLKEE-----RLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKT 150 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~~~~~-----~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~ 150 (185)
..+..+|++++|+|+. +-++-......+...-... .....|++++.||.|+..+...... ...+-.. ...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~ 421 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGR 421 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccC
Confidence 4567899999999993 3333333333333322211 1124789999999998765222211 1111111 111
Q ss_pred cceEE-EeecccCCCCHHHHHHHHHHHHhh
Q 029920 151 RHWKI-VGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 151 ~~~~~-~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
...++ .++|++++++++.|.+.+.+.+..
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 33444 559999999999999998887643
No 247
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=4.7e-17 Score=112.27 Aligned_cols=169 Identities=24% Similarity=0.354 Sum_probs=128.0
Q ss_pred HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhc---C
Q 029920 7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFE---Q 83 (185)
Q Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~ 83 (185)
......++....|.++|+.+||||+|.-+|..+..+.....+......+.+++....++|.||+.+.+.....++. .
T Consensus 29 ~~~~~rrs~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~ 108 (238)
T KOG0090|consen 29 KLKLFRRSKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYS 108 (238)
T ss_pred HHHHHhhccCCcEEEEecCCCCceeeeeehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHcccccc
Confidence 3344556667889999999999999999999887777777777777778888888999999999999887777777 7
Q ss_pred CCEEEEEEeCCC-cccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc---------------
Q 029920 84 TDGLVWVVDSSD-LRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAKVLNLE--------------- 145 (185)
Q Consensus 84 ~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--------------- 145 (185)
+-+++||+|... ........+++-+++... ....+|++++-||.|+..+...+.+.+.+..+
T Consensus 109 akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~ 188 (238)
T KOG0090|consen 109 AKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSIS 188 (238)
T ss_pred ceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 899999999764 556667777777776654 24568999999999997765554433332110
Q ss_pred -------------c--cc----CccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 146 -------------A--MD----KTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 146 -------------~--~~----~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
. +. ....+.|.++|++++ +++++-+|+...
T Consensus 189 ~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 189 DEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 00 014567899999999 899999998764
No 248
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.76 E-value=1.4e-17 Score=136.20 Aligned_cols=152 Identities=13% Similarity=0.125 Sum_probs=97.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCccc------------------------------------ccCcceEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------------------------------------SPTLGFNIKTV 55 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------------------------------------~~t~~~~~~~~ 55 (185)
+.+..++|+++|++++|||||+++|+...-... .-|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 466779999999999999999999875322110 01222333445
Q ss_pred EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-
Q 029920 56 TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT- 134 (185)
Q Consensus 56 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~- 134 (185)
..++.++.++||||++.+.......+..+|++++|+|+.....-+ ....+. ++... ...++++++||+|+.+...
T Consensus 100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~-t~e~~~-~~~~~--~~~~iivvvNK~D~~~~~~~ 175 (632)
T PRK05506 100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQ-TRRHSF-IASLL--GIRHVVLAVNKMDLVDYDQE 175 (632)
T ss_pred ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCcccc-CHHHHH-HHHHh--CCCeEEEEEEecccccchhH
Confidence 567789999999999988766666788999999999997642211 111111 12211 1367899999999864211
Q ss_pred -HHHHHHhcCc--ccccCccceEEEeecccCCCCHHH
Q 029920 135 -PTEIAKVLNL--EAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 135 -~~~~~~~~~~--~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
..++...+.. ... .....+++++||++|.|+++
T Consensus 176 ~~~~i~~~i~~~~~~~-~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 VFDEIVADYRAFAAKL-GLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHc-CCCCccEEEEecccCCCccc
Confidence 1222222211 011 11456799999999999874
No 249
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.76 E-value=6.9e-18 Score=110.59 Aligned_cols=163 Identities=18% Similarity=0.268 Sum_probs=121.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
-.++|.++|++..|||||+-...++... .+..+.| +..+.+...+ ..|.+||..|++++..+.......+.++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 3689999999999999999998888774 4445555 3444455544 689999999999999988888889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc-ccccCccceEEEeecccCCCCHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL-EAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
++|++++.++....+|+++....+ ...+ -|+|++|.|..-...++.....-.+ -..++-.+.+.|.+|+.++.|+..
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~N-ktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K 176 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLN-KTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK 176 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccC-Cccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence 999999999999999999875542 2224 4678999996543333221111111 112222567889999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|..+.-.+-.
T Consensus 177 IFK~vlAklFn 187 (205)
T KOG1673|consen 177 IFKIVLAKLFN 187 (205)
T ss_pred HHHHHHHHHhC
Confidence 99987766543
No 250
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=4.8e-17 Score=125.90 Aligned_cols=159 Identities=18% Similarity=0.165 Sum_probs=114.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.++++-|-++|+..-|||||+.+|.+...... ...+|-..-.+. .+..+.+.||||+..|..++.....-+|++
T Consensus 150 ~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv 228 (683)
T KOG1145|consen 150 EPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV 228 (683)
T ss_pred CCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence 34677899999999999999999988766321 222222222233 568999999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccc--cCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAM--DKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+.+.|.-.-+. .+.+++....+.|+++.+||+|.+.....+...+.+..... .-..+.+++++||++|.|
T Consensus 229 VLVVAadDGVmpQT-----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n 303 (683)
T KOG1145|consen 229 VLVVAADDGVMPQT-----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN 303 (683)
T ss_pred EEEEEccCCccHhH-----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence 99999988533222 22233334458999999999998876444333333332211 112567899999999999
Q ss_pred HHHHHHHHHHHH
Q 029920 166 LLEGFDWLVQDI 177 (185)
Q Consensus 166 i~~l~~~l~~~~ 177 (185)
++.|.+.++-..
T Consensus 304 l~~L~eaill~A 315 (683)
T KOG1145|consen 304 LDLLEEAILLLA 315 (683)
T ss_pred hHHHHHHHHHHH
Confidence 999988876543
No 251
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.75 E-value=1.1e-16 Score=113.28 Aligned_cols=162 Identities=14% Similarity=0.077 Sum_probs=100.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchhh-------HHHH----Hhh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRTI-------RSYW----RNY 80 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~----~~~ 80 (185)
++|+++|.+|+|||||+|++++...... +.|.........+++..+.++||||.... .... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence 4799999999999999999998866322 23444555566778899999999995432 1111 122
Q ss_pred hcCCCEEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--ccccCccceEEEe
Q 029920 81 FEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--EAMDKTRHWKIVG 157 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 157 (185)
.++.|++++|+++.+. .......+++...+.. ..-.++++++|++|.......++....... ..+-..++-.++.
T Consensus 81 ~~g~~~illVi~~~~~t~~d~~~l~~l~~~fg~--~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~ 158 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGE--KVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA 158 (196)
T ss_pred CCCCEEEEEEEECCCcCHHHHHHHHHHHHHhCh--HhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence 3678999999999862 2223333344443331 112579999999997654333322111100 0000112222222
Q ss_pred e-----cccCCCCHHHHHHHHHHHHhhh
Q 029920 158 C-----SAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~-----Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+ |+..+.++++|++.+.+.+.++
T Consensus 159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 159 FNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 2 3667889999999999998863
No 252
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.74 E-value=3.9e-20 Score=124.50 Aligned_cols=162 Identities=21% Similarity=0.305 Sum_probs=127.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC---eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK---YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
+.+.+++.|+|..|+|||+++.+.....++ .+..|++ +..+.+.+++ +.+++||..|++.+..+...|++.+++
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 456799999999999999999999888876 4666776 4445566665 568899999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhcccc---CCCeEEEEeecCCCCCCCCH---HHHHHhcCcccccCccc-eEEEeec
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERL---SGASLLILANKQDINGALTP---TEIAKVLNLEAMDKTRH-WKIVGCS 159 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~S 159 (185)
.++|+|+++..+|+....|.++....... ...|+++.+||||....... +.+...... ++ ..-+++|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~ke------ngf~gwtets 175 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKE------NGFEGWTETS 175 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhc------cCccceeeec
Confidence 99999999999999999999988665433 34789999999998543222 222222222 22 2369999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
++.+.|++|.-..++..+.-+
T Consensus 176 ~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 176 AKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred cccccChhHHHHHHHHHHHhh
Confidence 999999999999999876543
No 253
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.74 E-value=3.8e-18 Score=132.66 Aligned_cols=162 Identities=18% Similarity=0.192 Sum_probs=120.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce--E-EEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF--N-IKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~--~-~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
....+||+++|+.||||||||-+|....+....|..-. . ...+.-+.+...++|++..+.-+.....-++.+|++.+
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 45679999999999999999999999888655443221 1 12233455778999998777666666777899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCCCCH--HH-HHHhcCcccccCccceEEEeecccCCC
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGALTP--TE-IAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
||+++++++++.+...|...++... -.+.|+|+|+||+|..+.... +. ....+.. ....-.+++|||++-.
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~----f~EiEtciecSA~~~~ 161 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIA----FAEIETCIECSALTLA 161 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHH----hHHHHHHHhhhhhhhh
Confidence 9999999999999999999888754 246899999999998665433 22 1211111 0012247999999999
Q ss_pred CHHHHHHHHHHHHh
Q 029920 165 GLLEGFDWLVQDIA 178 (185)
Q Consensus 165 ~i~~l~~~l~~~~~ 178 (185)
|+.++|....+.+.
T Consensus 162 n~~e~fYyaqKaVi 175 (625)
T KOG1707|consen 162 NVSELFYYAQKAVI 175 (625)
T ss_pred hhHhhhhhhhheee
Confidence 99999988766653
No 254
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.74 E-value=4e-17 Score=120.13 Aligned_cols=155 Identities=24% Similarity=0.299 Sum_probs=102.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC-------cccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT-------SVISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQ 83 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~-------~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 83 (185)
-|.++|.||+|||||++.+..-+. ....|..++... .....|.+-|.||.-+ .......+++.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~---~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER 237 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV---DGGESFVVADIPGLIEGASEGVGLGLRFLRHIER 237 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEe---cCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence 478999999999999999976544 233344443222 3556799999999432 33345567889
Q ss_pred CCEEEEEEeCCCccc---HHHHHHHHHHHHhc-cccCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEE-e
Q 029920 84 TDGLVWVVDSSDLRR---LDDCKMELDNLLKE-ERLSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIV-G 157 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 157 (185)
|.+++.|+|++..+. .+.......++..+ ....++|.++|+||+|+... +..+.....+... ..+..+ .
T Consensus 238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~-----~~~~~~~~ 312 (369)
T COG0536 238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEA-----LGWEVFYL 312 (369)
T ss_pred hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHh-----cCCCccee
Confidence 999999999985432 23322222222222 24458999999999996544 3333333333321 223222 2
Q ss_pred ecccCCCCHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+||.++.|++++...+.+.+.+.
T Consensus 313 ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 313 ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred eehhcccCHHHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 255
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.74 E-value=5.7e-17 Score=126.95 Aligned_cols=163 Identities=16% Similarity=0.157 Sum_probs=105.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc------ccC--cceEEE---------------EEEE------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI------SPT--LGFNIK---------------TVTY------------ 57 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~------~~t--~~~~~~---------------~~~~------------ 57 (185)
....++|+++|+-..|||||+.+|.+...... .-| .++... ....
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 46678999999999999999999987544211 111 111110 0000
Q ss_pred ----cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 58 ----QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 58 ----~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
-...+.++|+||++.+.......+..+|++++|+|+.+........+.+. ++.... -.++|+++||+|+.+..
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lg--i~~iIVvlNKiDlv~~~ 187 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMK--LKHIIILQNKIDLVKEA 187 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcC--CCcEEEEEecccccCHH
Confidence 02368999999999998887788889999999999987421122223332 222221 24689999999997543
Q ss_pred CHHHHHHhcCccc-ccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 134 TPTEIAKVLNLEA-MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 134 ~~~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
...+....+.... .......+++++||++|.|+++|++.|.+.+.
T Consensus 188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 3222222221100 00114678999999999999999999987654
No 256
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.73 E-value=4.4e-17 Score=116.71 Aligned_cols=108 Identities=20% Similarity=0.216 Sum_probs=76.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---------c----------cccCcceEEEEEEEc----------CeEEEEEEcC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---------V----------ISPTLGFNIKTVTYQ----------KYTLNIWDVG 68 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---------~----------~~~t~~~~~~~~~~~----------~~~~~~~D~~ 68 (185)
+|+++|+.++|||||+.+|....-. . ..-|+......+.+. +..+++||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 7999999999999999998643210 0 001111111122222 6789999999
Q ss_pred CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
|+..+......+++.+|++++|+|+.+..+.+. ...+..... .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~----~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK----ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCcc
Confidence 999999999999999999999999998655443 223333322 368999999999975
No 257
>PRK12739 elongation factor G; Reviewed
Probab=99.73 E-value=2.9e-16 Score=129.49 Aligned_cols=115 Identities=22% Similarity=0.155 Sum_probs=84.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.++..+|+++|++++|||||+++|.... .. ...-|.......+.+++.++.++||||+.
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 84 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV 84 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence 4567789999999999999999986321 00 11123444455677889999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.+...+...+..+|++++|+|+.+....+. ...+... ...++|.|+++||+|+...
T Consensus 85 ~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~----~~~~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 DFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQA----DKYGVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHH----HHcCCCEEEEEECCCCCCC
Confidence 888888889999999999999987533222 2222222 2236899999999998754
No 258
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=8.9e-17 Score=124.38 Aligned_cols=157 Identities=18% Similarity=0.229 Sum_probs=111.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCC------c--------ccccCcceE----EEEEEEcC---eEEEEEEcCCchh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDT------S--------VISPTLGFN----IKTVTYQK---YTLNIWDVGGQRT 72 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~------~--------~~~~t~~~~----~~~~~~~~---~~~~~~D~~g~~~ 72 (185)
++-.+++|+.+-.-|||||..+|....- . ......|++ ...+.+.+ +.++++||||+-.
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 5556899999999999999999743111 0 111222222 23345554 8999999999999
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH 152 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
|.......+..||++++|+|++..-.-+.....+..+ + .+..+|.|+||+|++.+...+...+.+. .+.. +.
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAf-e----~~L~iIpVlNKIDlp~adpe~V~~q~~~--lF~~-~~ 209 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAF-E----AGLAIIPVLNKIDLPSADPERVENQLFE--LFDI-PP 209 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHH-H----cCCeEEEeeeccCCCCCCHHHHHHHHHH--HhcC-Cc
Confidence 9999999999999999999999743333333322332 2 2688999999999987744333222221 1111 45
Q ss_pred eEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 153 WKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.+++.+||++|.|+++++++|++.+.
T Consensus 210 ~~~i~vSAK~G~~v~~lL~AII~rVP 235 (650)
T KOG0462|consen 210 AEVIYVSAKTGLNVEELLEAIIRRVP 235 (650)
T ss_pred cceEEEEeccCccHHHHHHHHHhhCC
Confidence 57999999999999999999999875
No 259
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.72 E-value=2.2e-16 Score=130.16 Aligned_cols=116 Identities=20% Similarity=0.105 Sum_probs=84.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-----c----------------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-----V----------------ISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~----------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.++..+|+++|++|+|||||+++|....-. . ..-|.......+.+++.++.++||||+.
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~ 86 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV 86 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence 445679999999999999999999632110 0 1113334445677889999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
.+......+++.+|++++|+|+.+....+. ...+... ...++|+++++||+|+....
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~-~~~~~~~----~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQS-ETVWRQA----NRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhH-HHHHHHH----HHcCCCEEEEEECCCCCCCC
Confidence 888888889999999999999987544332 2222322 22368999999999987653
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.71 E-value=5.6e-16 Score=116.36 Aligned_cols=155 Identities=25% Similarity=0.256 Sum_probs=96.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCc-------ccccCcceEEEEE-------------------E-EcCeEEEEEEcCCc-
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTS-------VISPTLGFNIKTV-------------------T-YQKYTLNIWDVGGQ- 70 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~-------~~~~t~~~~~~~~-------------------~-~~~~~~~~~D~~g~- 70 (185)
|+++|.||+|||||+|+|++.... ...|+.+...... . ....++++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999987642 2233433322110 0 12368999999996
Q ss_pred ---hhhHH---HHHhhhcCCCEEEEEEeCCC---------------cc-cHHHHHH------------------------
Q 029920 71 ---RTIRS---YWRNYFEQTDGLVWVVDSSD---------------LR-RLDDCKM------------------------ 104 (185)
Q Consensus 71 ---~~~~~---~~~~~~~~~d~~i~v~d~~~---------------~~-s~~~~~~------------------------ 104 (185)
++... .....++.+|++++|+|+.. |. .++.+..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333 33445899999999999973 10 1111100
Q ss_pred --------------------HHHHHHhcc---------------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920 105 --------------------ELDNLLKEE---------------------RLSGASLLILANKQDINGALTPTEIAKVLN 143 (185)
Q Consensus 105 --------------------~~~~~~~~~---------------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 143 (185)
.+..++... ....+|+|+++||+|+..... ....+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~---~~~~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAEN---NISKLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHH---HHHHHH
Confidence 011111110 123579999999999754322 222111
Q ss_pred cccccCccceEEEeecccCCCCHHHHHH-HHHHHHhhh
Q 029920 144 LEAMDKTRHWKIVGCSAYTGEGLLEGFD-WLVQDIASR 180 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~Sa~~~~~i~~l~~-~l~~~~~~~ 180 (185)
. .....+++++||+.+.+++++.+ .+.+.+.+.
T Consensus 238 ~----~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 238 L----KYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred h----hCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 1 11345799999999999999998 688887653
No 261
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.71 E-value=8.9e-17 Score=128.12 Aligned_cols=116 Identities=16% Similarity=0.218 Sum_probs=82.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhC--CCCcc-------------c----------ccCcceEEEEEEEcCeEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKING--EDTSV-------------I----------SPTLGFNIKTVTYQKYTLNIWD 66 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~--~~~~~-------------~----------~~t~~~~~~~~~~~~~~~~~~D 66 (185)
+..+..+|+++|++++|||||+++|+. +.... . ..+.......+.+++..++++|
T Consensus 7 ~~~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliD 86 (527)
T TIGR00503 7 EVDKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLD 86 (527)
T ss_pred hhccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEE
Confidence 346678999999999999999999742 21110 0 0111223345677889999999
Q ss_pred cCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 67 VGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 67 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
|||+..+......++..+|++++|+|+++... .....++ .... ..++|+++++||+|+...
T Consensus 87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~-~~~~---~~~~PiivviNKiD~~~~ 147 (527)
T TIGR00503 87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLM-EVTR---LRDTPIFTFMNKLDRDIR 147 (527)
T ss_pred CCChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHH-HHHH---hcCCCEEEEEECccccCC
Confidence 99999888877778899999999999987421 1222222 2222 247899999999998654
No 262
>PRK00007 elongation factor G; Reviewed
Probab=99.71 E-value=8.7e-16 Score=126.66 Aligned_cols=115 Identities=21% Similarity=0.121 Sum_probs=82.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC--CCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING--EDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
.++..+|+++|++|+|||||+++|.. +... ...-|.......+.+.+..++++||||+.
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~ 86 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV 86 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence 45567999999999999999999963 1110 11123333344567789999999999998
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.+.......+..+|++++|+|+...-..+. ...+..... .++|.++++||+|+...
T Consensus 87 ~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~----~~~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 87 DFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADK----YKVPRIAFVNKMDRTGA 142 (693)
T ss_pred HHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHH----cCCCEEEEEECCCCCCC
Confidence 887778888899999999999886433222 222333322 36899999999998754
No 263
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.4e-16 Score=119.95 Aligned_cols=154 Identities=19% Similarity=0.234 Sum_probs=102.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhC---------------------CC---C----------cccccCcceEEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKING---------------------ED---T----------SVISPTLGFNIKTVTY 57 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~---------------------~~---~----------~~~~~t~~~~~~~~~~ 57 (185)
..+..++++++|+..+|||||+-+|.- +. + ...+-|+......++.
T Consensus 3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet 82 (428)
T COG5256 3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET 82 (428)
T ss_pred CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence 356789999999999999999988732 11 0 0112244445555667
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD--DCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+.+.+.++|+||+..|.........++|+.|+|+|+.+.+ .|. .....-.-+.+.. .-..+||++||+|..+.
T Consensus 83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~w 160 (428)
T COG5256 83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSW 160 (428)
T ss_pred CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEEccccccc
Confidence 7889999999999999988888889999999999999863 111 1111111111221 24568999999999864
Q ss_pred CCH--HHHHHhcCc----ccccCccceEEEeecccCCCCHHH
Q 029920 133 LTP--TEIAKVLNL----EAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 133 ~~~--~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
.+. +++...+.. ..+.. .+++|+++|+..|.|+.+
T Consensus 161 de~rf~ei~~~v~~l~k~~G~~~-~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 161 DEERFEEIVSEVSKLLKMVGYNP-KDVPFIPISGFKGDNLTK 201 (428)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCc-cCCeEEecccccCCcccc
Confidence 322 222222221 11211 368899999999999854
No 264
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.70 E-value=5.9e-16 Score=116.76 Aligned_cols=135 Identities=22% Similarity=0.316 Sum_probs=102.2
Q ss_pred cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 115 (185)
+|.|+....+.+++..+.+||++|+...+..|..++.+++++++|+|+++. ..+.+....+..++.....
T Consensus 147 ~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~ 226 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWF 226 (317)
T ss_pred ccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccc
Confidence 466677777788899999999999999999999999999999999999873 4677788888888887666
Q ss_pred CCCeEEEEeecCCCCCC------------------CCHHHHHHhcCccc----ccCccceEEEeecccCCCCHHHHHHHH
Q 029920 116 SGASLLILANKQDINGA------------------LTPTEIAKVLNLEA----MDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~~------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
.+.|+++++||.|+... ...++....+.... -...+.+.+..++|.+-.++..+|+.+
T Consensus 227 ~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v 306 (317)
T cd00066 227 ANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAV 306 (317)
T ss_pred cCCCEEEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHH
Confidence 78999999999995431 11112111111111 011245667789999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.++
T Consensus 307 ~~~i~~~ 313 (317)
T cd00066 307 KDIILQN 313 (317)
T ss_pred HHHHHHH
Confidence 9988764
No 265
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.69 E-value=9.6e-16 Score=116.50 Aligned_cols=135 Identities=19% Similarity=0.282 Sum_probs=101.8
Q ss_pred cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 115 (185)
+|.|+....+.+++..+.+||.+|+...+..|..++.++++++||+|+++. ..+......+..++.....
T Consensus 170 ~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~ 249 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWF 249 (342)
T ss_pred CccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccc
Confidence 466667777888889999999999999999999999999999999999973 3677788888888887667
Q ss_pred CCCeEEEEeecCCCCCCC-----------------CHHHH----HHhcCccccc-CccceEEEeecccCCCCHHHHHHHH
Q 029920 116 SGASLLILANKQDINGAL-----------------TPTEI----AKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~~~-----------------~~~~~----~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
.+.|+++++||.|+.... ..... ...+....-. ....+.++.++|.+-.++..+|+.+
T Consensus 250 ~~~piil~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v 329 (342)
T smart00275 250 ANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAV 329 (342)
T ss_pred cCCcEEEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHH
Confidence 789999999999964320 11111 1111111000 1134667889999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.++
T Consensus 330 ~~~I~~~ 336 (342)
T smart00275 330 KDIILQR 336 (342)
T ss_pred HHHHHHH
Confidence 8887654
No 266
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.68 E-value=3.3e-15 Score=115.34 Aligned_cols=79 Identities=25% Similarity=0.307 Sum_probs=53.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEE------------------------EcCeEEEEEEcC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVT------------------------YQKYTLNIWDVG 68 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~------------------------~~~~~~~~~D~~ 68 (185)
.++|+++|.||+|||||+|+|++..... ...|......... ....+++++|+|
T Consensus 1 ~~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 1 MITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 3689999999999999999999876632 1122222221111 123678999999
Q ss_pred Cch----h---hHHHHHhhhcCCCEEEEEEeCC
Q 029920 69 GQR----T---IRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 69 g~~----~---~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
|.. . ........++.+|++++|+|+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 942 2 2223344588999999999997
No 267
>PRK12740 elongation factor G; Reviewed
Probab=99.66 E-value=2.8e-15 Score=123.58 Aligned_cols=106 Identities=22% Similarity=0.173 Sum_probs=77.9
Q ss_pred EcCCCCChHHHHHHHhCCCCc---------------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920 22 VGLDNSGKTTIVLKINGEDTS---------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY 80 (185)
Q Consensus 22 ~G~~~~GKttli~~l~~~~~~---------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 80 (185)
+|++|+|||||+++|....-. ....|.......+.+.+..+.++||||+..+...+..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 599999999999999432110 11224444555677889999999999999888888888
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+|++++|+|+++...... ...+.... ..++|+++++||+|+...
T Consensus 81 l~~aD~vllvvd~~~~~~~~~-~~~~~~~~----~~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQT-ETVWRQAE----KYGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHH-HHHHHHHH----HcCCCEEEEEECCCCCCC
Confidence 999999999999988654433 22233322 236899999999998754
No 268
>PRK09866 hypothetical protein; Provisional
Probab=99.66 E-value=5.7e-15 Score=117.58 Aligned_cols=113 Identities=16% Similarity=0.187 Sum_probs=71.5
Q ss_pred eEEEEEEcCCchh-----hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC
Q 029920 60 YTLNIWDVGGQRT-----IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT 134 (185)
Q Consensus 60 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~ 134 (185)
.++.++||||... ........+..+|+++||+|+.+..+... ..+...+.... .+.|+++|+||+|+.+...
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D--eeIlk~Lkk~~-K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD--EEVREAILAVG-QSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH--HHHHHHHHhcC-CCCCEEEEEEcccCCCccc
Confidence 4678999999643 22334457899999999999987433332 22233333211 1259999999999864322
Q ss_pred --HHHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHH
Q 029920 135 --PTEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 135 --~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.+.+.......... ......++++||+.|.|++++.+.|..
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 22333322111001 112346899999999999999999877
No 269
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=109.78 Aligned_cols=163 Identities=17% Similarity=0.269 Sum_probs=109.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCcc-eEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTLG-FNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYF 81 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~~-~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 81 (185)
...+++|.++|..|+|||||||+|+........ .+.. .+.....++...+.+||+||.++ .++....++
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 557899999999999999999999965554332 2222 23333455668899999999544 667788889
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC---------CHHHHHHhcCc---ccccC
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL---------TPTEIAKVLNL---EAMDK 149 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~---------~~~~~~~~~~~---~~~~~ 149 (185)
...|.+++++++.|+. +.--...+++++... .+.++++++|.+|...+. ....+.+.... ...+.
T Consensus 116 ~~~DLvL~l~~~~dra-L~~d~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~ 192 (296)
T COG3596 116 PKLDLVLWLIKADDRA-LGTDEDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRL 192 (296)
T ss_pred hhccEEEEeccCCCcc-ccCCHHHHHHHHHhc--cCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 222223344544432 258999999999976541 11111111111 00011
Q ss_pred -ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 150 -TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 150 -~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
..--|++..|.+.++|++++...+++.+.
T Consensus 193 ~q~V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 193 FQEVKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HhhcCCeEEeccccCccHHHHHHHHHHhCc
Confidence 12346777888999999999999998875
No 270
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.65 E-value=8.1e-16 Score=97.41 Aligned_cols=138 Identities=21% Similarity=0.213 Sum_probs=93.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCch----hhHHHHHhhhcCCCEEEEEEeC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQR----TIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
|++++|..|||||||.++|.|...-.. .|-. +++++ =-.+||||.- ............+|++++|-.+
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk-KTQA-----ve~~d--~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~a 74 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK-KTQA-----VEFND--KGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAA 74 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc-ccce-----eeccC--ccccCCchhhhhhhHHHHHHHHHhhccceeeeeecc
Confidence 789999999999999999998754211 1111 11211 1258999943 2322233345789999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++++.-. -.+... ...|+|-+++|.|+.++...+.....+.+.. .-++|++|+.++.|++++++.|
T Consensus 75 nd~~s~f~-----p~f~~~---~~k~vIgvVTK~DLaed~dI~~~~~~L~eaG-----a~~IF~~s~~d~~gv~~l~~~L 141 (148)
T COG4917 75 NDPESRFP-----PGFLDI---GVKKVIGVVTKADLAEDADISLVKRWLREAG-----AEPIFETSAVDNQGVEELVDYL 141 (148)
T ss_pred cCccccCC-----cccccc---cccceEEEEecccccchHhHHHHHHHHHHcC-----CcceEEEeccCcccHHHHHHHH
Confidence 99754322 111111 2467999999999997655555555554432 2369999999999999999988
Q ss_pred HHH
Q 029920 174 VQD 176 (185)
Q Consensus 174 ~~~ 176 (185)
...
T Consensus 142 ~~~ 144 (148)
T COG4917 142 ASL 144 (148)
T ss_pred Hhh
Confidence 764
No 271
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.62 E-value=4.2e-15 Score=113.66 Aligned_cols=155 Identities=21% Similarity=0.266 Sum_probs=107.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc--------------ccccCcceEEE----EEEE-----cCeEEEEEEcCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--------------VISPTLGFNIK----TVTY-----QKYTLNIWDVGG 69 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--------------~~~~t~~~~~~----~~~~-----~~~~~~~~D~~g 69 (185)
.++..+.+++.+-.-|||||..++....-. ......|++.+ .+.+ +.+.++++||||
T Consensus 6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 345567899999999999999998542220 11122222222 2222 348899999999
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCccc
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNLEA 146 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~ 146 (185)
+-.|.-.....+..|.+.++|+|++..-.-+.+...+..+ . .+.-+|-|+||+|++.+...+ ++.+.++.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAl-e----~~LeIiPViNKIDLP~Adpervk~eIe~~iGi-- 158 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NNLEIIPVLNKIDLPAADPERVKQEIEDIIGI-- 158 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHH-H----cCcEEEEeeecccCCCCCHHHHHHHHHHHhCC--
Confidence 9888877777788999999999999753333333333333 2 268899999999998875443 23333332
Q ss_pred ccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 147 MDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.....+.+||++|.|++++++.|++.+.
T Consensus 159 ----d~~dav~~SAKtG~gI~~iLe~Iv~~iP 186 (603)
T COG0481 159 ----DASDAVLVSAKTGIGIEDVLEAIVEKIP 186 (603)
T ss_pred ----CcchheeEecccCCCHHHHHHHHHhhCC
Confidence 2334799999999999999999999875
No 272
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.62 E-value=5.6e-15 Score=109.35 Aligned_cols=112 Identities=13% Similarity=0.152 Sum_probs=69.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCccc-----------ccCcceEE--EEEEEcC--eEEEEEEcCCchhhHH----
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVI-----------SPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRS---- 75 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----------~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~---- 75 (185)
-.++|+|+|.+|+|||||+|+|++..+... .+|..... ..+..++ ..+.+|||||......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 468999999999999999999998877432 22333222 2334444 5799999999322110
Q ss_pred ----------------------HHHhhhc--CCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 76 ----------------------YWRNYFE--QTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 76 ----------------------~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
.+...+. .+|+++|+++.+.. .+... ...+..+ .. ++|+++|+||+|+.
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l-~~----~v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL-SK----RVNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH-hc----cCCEEEEEECCCcC
Confidence 0001122 46888898887642 22222 2222222 21 58999999999986
Q ss_pred CC
Q 029920 131 GA 132 (185)
Q Consensus 131 ~~ 132 (185)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 54
No 273
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.60 E-value=2.1e-14 Score=102.67 Aligned_cols=162 Identities=14% Similarity=0.087 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHh----h
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRN----Y 80 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~----~ 80 (185)
++|+++|.+|+||||++|.+++...... +.|..........++..+.++||||... ....... .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~ 80 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC 80 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence 5899999999999999999998877432 2355566777788999999999999321 1111221 2
Q ss_pred hcCCCEEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC---cccccCccceEEE
Q 029920 81 FEQTDGLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN---LEAMDKTRHWKIV 156 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 156 (185)
..+.|++++|+++... ..-......+..++.... -..++||+|..|.......++...... ...+-..++-.++
T Consensus 81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~ 158 (212)
T PF04548_consen 81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH 158 (212)
T ss_dssp TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence 3578999999999842 122334445555554322 246889999998655544332222000 0111111333455
Q ss_pred eeccc------CCCCHHHHHHHHHHHHhhh
Q 029920 157 GCSAY------TGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 157 ~~Sa~------~~~~i~~l~~~l~~~~~~~ 180 (185)
.++.+ ...++.+|++.+-+.+.++
T Consensus 159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 159 VFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp ECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 55554 3457888888888877665
No 274
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-14 Score=110.77 Aligned_cols=159 Identities=22% Similarity=0.299 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCC--cc-------------cccCcc----eEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDT--SV-------------ISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~--~~-------------~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~ 75 (185)
...+|+++.+..-|||||+..|..+.- .. .....+ ..-..+.++++.++++||||+..|..
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGG 83 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGG 83 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccc
Confidence 345799999999999999999865322 11 111222 22234678899999999999999999
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC----cccccCcc
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN----LEAMDKTR 151 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~ 151 (185)
..+..+.-.|.+++++|+.+.- +...+-.+.+.+.. +.+.|||+||+|.+.+.....+.+.+. ...-....
T Consensus 84 EVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 84 EVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALAL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred hhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHHc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 9999999999999999999742 23333334444444 688899999999987755444333332 22223347
Q ss_pred ceEEEeecccCCC----------CHHHHHHHHHHHHh
Q 029920 152 HWKIVGCSAYTGE----------GLLEGFDWLVQDIA 178 (185)
Q Consensus 152 ~~~~~~~Sa~~~~----------~i~~l~~~l~~~~~ 178 (185)
++|++..|+++|. ++..||+.|++.+.
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp 195 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVP 195 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCC
Confidence 8899999999873 78889999888764
No 275
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.60 E-value=4e-14 Score=106.11 Aligned_cols=136 Identities=22% Similarity=0.340 Sum_probs=102.0
Q ss_pred ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHhccc
Q 029920 45 SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR----------RLDDCKMELDNLLKEER 114 (185)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~ 114 (185)
.+|.|+....+.+.+..+.+.|.+||...+.-|.++++++++++||+++++.+ .+.+....+..+.....
T Consensus 180 ~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~ 259 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKW 259 (354)
T ss_pred cCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcc
Confidence 35888888888999999999999999999999999999999999999988632 44556777888888877
Q ss_pred cCCCeEEEEeecCCCCCCC-----------------CHHHHH----HhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 115 LSGASLLILANKQDINGAL-----------------TPTEIA----KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 115 ~~~~~~ivv~nK~D~~~~~-----------------~~~~~~----~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
..+.++|+++||.|+.... ..++.. ..+....-.....+.+..++|.+-.||+.+|..+
T Consensus 260 F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av 339 (354)
T KOG0082|consen 260 FANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAV 339 (354)
T ss_pred cccCcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHH
Confidence 7889999999999985421 111111 1111111111134456667999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.+.
T Consensus 340 ~d~Ii~~ 346 (354)
T KOG0082|consen 340 TDTIIQN 346 (354)
T ss_pred HHHHHHH
Confidence 9887654
No 276
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.59 E-value=3.2e-14 Score=102.51 Aligned_cols=144 Identities=19% Similarity=0.145 Sum_probs=86.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
...+..|+++|++|+|||||++.+.+.... ......+. .......+..+.++||||.. .......+.+|++++++
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i~i~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllvi 111 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-ITVVTGKKRRLTFIECPNDI---NAMIDIAKVADLVLLLI 111 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-EEEEecCCceEEEEeCCchH---HHHHHHHHhcCEEEEEE
Confidence 345678999999999999999998875222 12222221 11233467789999999864 22233467899999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCC-HHHHHHhcCcccc-cCccceEEEeecccCCCC
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALT-PTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~ 165 (185)
|++....... ..+...+.. .+.| +++|+||+|+..... ..+....+..... ....+.+++.+||+++-.
T Consensus 112 Da~~~~~~~~--~~i~~~l~~---~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~ 183 (225)
T cd01882 112 DASFGFEMET--FEFLNILQV---HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR 183 (225)
T ss_pred ecCcCCCHHH--HHHHHHHHH---cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence 9986433222 222233322 2566 455999999864322 2222222221111 112456899999998743
No 277
>PRK13768 GTPase; Provisional
Probab=99.59 E-value=4.3e-15 Score=108.78 Aligned_cols=118 Identities=20% Similarity=0.186 Sum_probs=73.7
Q ss_pred eEEEEEEcCCchhhH---HHHHhh---hcC--CCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 60 YTLNIWDVGGQRTIR---SYWRNY---FEQ--TDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~---~~~~~~---~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
..+.++|+||+.+.. ..+..+ +.. .+++++++|+....+.... ..++...... ...+.|+++|+||+|+.
T Consensus 97 ~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~-~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 97 ADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQ-LRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHH-HHcCCCEEEEEEhHhhc
Confidence 378999999976532 222222 222 8999999999764333222 1222221111 12379999999999997
Q ss_pred CCCCHHHHHHhcCc-----------------------ccccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 131 GALTPTEIAKVLNL-----------------------EAMDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 131 ~~~~~~~~~~~~~~-----------------------~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+..+.++....+.. +.+.. ....+++++|++++.|+++++++|.+.+.
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 76555444333321 00011 12357899999999999999999988764
No 278
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.58 E-value=1.4e-14 Score=109.06 Aligned_cols=154 Identities=18% Similarity=0.183 Sum_probs=92.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC----C--CCc-----ccc------------------cCcceEEEE---------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING----E--DTS-----VIS------------------PTLGFNIKT--------- 54 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~----~--~~~-----~~~------------------~t~~~~~~~--------- 54 (185)
..+.+.|.|.|+||+|||||++.+.. . ... ..+ .........
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~ 132 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGG 132 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccc
Confidence 46778999999999999999998632 1 110 000 001111111
Q ss_pred -----------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 55 -----------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 55 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
+...++.+.++||+|...-... ....+|.++++.+....+..+.... ..+ ...-++|
T Consensus 133 ~a~~~~~~~~~~~~~g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~------E~aDIiV 200 (332)
T PRK09435 133 VARKTRETMLLCEAAGYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIM------ELADLIV 200 (332)
T ss_pred hHHHHHHHHHHHhccCCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhh------hhhheEE
Confidence 1123578999999997632222 4567999999976443333333221 121 2234899
Q ss_pred eecCCCCCCCCHHHH----HHhcCcccccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 124 ANKQDINGALTPTEI----AKVLNLEAMDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 124 ~nK~D~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+||+|+......... ...+....... .-..|++.+||+++.|++++++.|.+.+.
T Consensus 201 VNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 201 INKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred eehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 999998765433322 22222111000 01247999999999999999999998764
No 279
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.57 E-value=9.8e-14 Score=117.16 Aligned_cols=142 Identities=23% Similarity=0.196 Sum_probs=90.9
Q ss_pred ChHHHHHHHhCCCCcccc-----cCcceEEEEEEE----------------cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 28 GKTTIVLKINGEDTSVIS-----PTLGFNIKTVTY----------------QKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 28 GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~----------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
+||||+.++.+....... ..++........ ....+.+|||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999987774221 222222111110 01138999999999998888888889999
Q ss_pred EEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--------------HHHHHHh--------
Q 029920 87 LVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--------------PTEIAKV-------- 141 (185)
Q Consensus 87 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--------------~~~~~~~-------- 141 (185)
+++|+|+++ +.++..+ . .+.. .++|+++++||+|+..... ..+....
T Consensus 553 vlLVVDa~~Gi~~qT~e~I----~-~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v 624 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAI----N-ILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYEL 624 (1049)
T ss_pred EEEEEECcccCCHhHHHHH----H-HHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999986 3333322 2 2222 2689999999999853211 0111110
Q ss_pred ---cCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 142 ---LNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 142 ---~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
+....+ ......+++++||++|.|+++|...|....
T Consensus 625 ~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 625 IGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred hhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 111110 112467899999999999999999886544
No 280
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.57 E-value=9.9e-15 Score=104.67 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=75.6
Q ss_pred eEEEEEEcCCchh-h-----HHHHHhhh--cCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920 60 YTLNIWDVGGQRT-I-----RSYWRNYF--EQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQD 128 (185)
Q Consensus 60 ~~~~~~D~~g~~~-~-----~~~~~~~~--~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 128 (185)
..+.++||||+-+ | .......+ ....+++||+|..+ +.+|-.-.-+-..++.. .+.|+|+++||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk---tklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK---TKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh---ccCCeEEEEeccc
Confidence 6799999999643 2 11222222 24467888998654 44554433333444443 3799999999999
Q ss_pred CCCCCCHHHHHHhc----------------------CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 129 INGALTPTEIAKVL----------------------NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 129 ~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+.+..-..++...+ .+....+.++...+.+|+.+|.|.+++|..+...+.+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 98764443332222 11112224567789999999999999999988877553
No 281
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.56 E-value=2.7e-14 Score=118.29 Aligned_cols=116 Identities=19% Similarity=0.105 Sum_probs=80.1
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCC---------------CCcc----cccCcceEE----EEEEEcCeEEEEEEc
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGE---------------DTSV----ISPTLGFNI----KTVTYQKYTLNIWDV 67 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~---------------~~~~----~~~t~~~~~----~~~~~~~~~~~~~D~ 67 (185)
...++..+|+++|+.++|||||+++|... .+.. ...|+.... ..+.++++.+.++||
T Consensus 14 ~~~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDT 93 (720)
T TIGR00490 14 WKPKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDT 93 (720)
T ss_pred hCcccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeC
Confidence 33455679999999999999999998642 1111 112332211 124556789999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
||+..+.......++.+|++++|+|+.+.-..+. ...+.... ..+.|.++++||+|...
T Consensus 94 PG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 94 PGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----KENVKPVLFINKVDRLI 152 (720)
T ss_pred CCccccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----HcCCCEEEEEEChhccc
Confidence 9999988888889999999999999987422221 12222222 23678899999999854
No 282
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=111.31 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=112.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCch-----hhHHHHH----hh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQR-----TIRSYWR----NY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~----~~ 80 (185)
..+..++++||.||+||||+++.+...... ....|.......+.+....++++||||.- ....+-. ..
T Consensus 165 Dp~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITAL 244 (620)
T KOG1490|consen 165 DPNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITAL 244 (620)
T ss_pred CCCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHH
Confidence 445678999999999999999988776652 44556667777788888999999999932 1111111 11
Q ss_pred hcCCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 81 FEQTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
..--.+|+|+.|++. ..|.....+.+..+.... .|.|+|+|+||+|........+..+.+-.. ......++++.+
T Consensus 245 AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~-~~~~~~v~v~~t 321 (620)
T KOG1490|consen 245 AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQT-IIDDGNVKVVQT 321 (620)
T ss_pred HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHH-HHhccCceEEEe
Confidence 122357888999885 567777777777664433 489999999999986654444333222211 112255889999
Q ss_pred cccCCCCHHHHHHHHHHHHh
Q 029920 159 SAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (185)
|+.+..|+.++....++.+.
T Consensus 322 S~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 322 SCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred cccchhceeeHHHHHHHHHH
Confidence 99999999888877776553
No 283
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.56 E-value=2.3e-13 Score=99.16 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=76.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhHH----------HH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIRS----------YW 77 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~ 77 (185)
.....++|+|+|.+|+|||||+|+|.+......+ .|..........++..+.++||||...... ..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 3566799999999999999999999998764332 233333334456788999999999654310 12
Q ss_pred Hhhhc--CCCEEEEEEeCCCcc-cHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 78 RNYFE--QTDGLVWVVDSSDLR-RLD--DCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 78 ~~~~~--~~d~~i~v~d~~~~~-s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
..++. ..|++++|..++... +.. .+.+.+.+.+.... -.++++|+||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i--~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSI--WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhh--HhCEEEEEeCCccCCC
Confidence 22333 578888887666421 222 23333444332211 2569999999997644
No 284
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.54 E-value=5.7e-13 Score=98.76 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=74.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccC----cceEEEEEEEcCeEEEEEEcCCchhhHHH-------HHhhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPT----LGFNIKTVTYQKYTLNIWDVGGQRTIRSY-------WRNYF 81 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~~~ 81 (185)
..+.++|+++|.+|+||||++|++.+......+.. ..........++..+.++||||..+.... ...++
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 34678999999999999999999999876433221 22222334457889999999996643221 11112
Q ss_pred --cCCCEEEEEEeCCCc--ccH-HHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 82 --EQTDGLVWVVDSSDL--RRL-DDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 82 --~~~d~~i~v~d~~~~--~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
...|+++||.+++.. ... ..+.+.+...+... --.++|+++|++|...
T Consensus 115 ~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~--iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKD--IWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhh--hhccEEEEEECCccCC
Confidence 268999999665432 212 23334444443221 1257999999999753
No 285
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.52 E-value=1.1e-13 Score=100.30 Aligned_cols=115 Identities=16% Similarity=0.041 Sum_probs=59.8
Q ss_pred EEEEEEcCCchhhHHHHHhhh--------cCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 61 TLNIWDVGGQRTIRSYWRNYF--------EQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 61 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
.+.++|||||.++...+...- ...-++++++|+....+.... ...+...... ...+.|.+.|+||+|+.+
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~-~~~~lP~vnvlsK~Dl~~ 170 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIM-LRLELPHVNVLSKIDLLS 170 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHH-HHHTSEEEEEE--GGGS-
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHH-hhCCCCEEEeeeccCccc
Confidence 799999999988766544333 345678889998754332222 1222222111 123799999999999976
Q ss_pred CCC--------------------HHHHHHhcCcccccCccce-EEEeecccCCCCHHHHHHHHHHHH
Q 029920 132 ALT--------------------PTEIAKVLNLEAMDKTRHW-KIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 132 ~~~--------------------~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
... .......+... +...... +++++|+.++.++++++..+-+.+
T Consensus 171 ~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~-l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 171 KYLEFILEWFEDPDSLEDLLESDYKKLNEEIAEL-LDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHH-CCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred chhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH-HhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 220 11111111111 2222344 799999999999999998876654
No 286
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.52 E-value=1.6e-13 Score=115.34 Aligned_cols=115 Identities=20% Similarity=0.187 Sum_probs=81.0
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc---------c----------cccCcceEEEEEEE--------------
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---------V----------ISPTLGFNIKTVTY-------------- 57 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---------~----------~~~t~~~~~~~~~~-------------- 57 (185)
...++..+|+|+|+.++|||||+++|....-. . ...|+......+.+
T Consensus 14 ~~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~ 93 (843)
T PLN00116 14 DKKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGER 93 (843)
T ss_pred hCccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeeccccccccccccc
Confidence 34566778999999999999999998643310 0 00111111112222
Q ss_pred --cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 58 --QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 58 --~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
+++.++++||||+.+|.......++.+|++|+|+|+.+.-.... ...|..... .++|+++++||+|..
T Consensus 94 ~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 94 DGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred CCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHHH----CCCCEEEEEECCccc
Confidence 25788999999999999888999999999999999987533222 233344333 379999999999986
No 287
>PTZ00416 elongation factor 2; Provisional
Probab=99.52 E-value=1.5e-13 Score=115.31 Aligned_cols=113 Identities=18% Similarity=0.210 Sum_probs=79.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc---------cc----------cCcceEEEEEEEc----------CeEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV---------IS----------PTLGFNIKTVTYQ----------KYTLN 63 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~---------~~----------~t~~~~~~~~~~~----------~~~~~ 63 (185)
.++..+|+++|+.++|||||+++|....-.. .. -|+......+.+. +..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 5566799999999999999999987532110 00 0111111123332 56799
Q ss_pred EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
++||||+.+|.......++.+|++++|+|+.+.-..+ ....+..... .++|+++++||+|+.
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~-t~~~~~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQ-TETVLRQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCcc-HHHHHHHHHH----cCCCEEEEEEChhhh
Confidence 9999999999888888899999999999998743322 2233333333 368999999999986
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=99.50 E-value=1.1e-12 Score=100.62 Aligned_cols=85 Identities=21% Similarity=0.285 Sum_probs=58.9
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEc-----------------CeEEEEEEcCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQ-----------------KYTLNIWDVGG 69 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g 69 (185)
..+....++|+++|.||+|||||+|+|.+..... ...|.......+.+. ..++.++|+||
T Consensus 15 ~~~~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpG 94 (390)
T PTZ00258 15 LGRPGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAG 94 (390)
T ss_pred hccCCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCC
Confidence 3446677899999999999999999998765521 222333333333332 23589999999
Q ss_pred chh-------hHHHHHhhhcCCCEEEEEEeCC
Q 029920 70 QRT-------IRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 70 ~~~-------~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
... ........++.+|++++|+|+.
T Consensus 95 Lv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 95 LVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 431 3334445578899999999984
No 289
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=2.6e-13 Score=106.13 Aligned_cols=154 Identities=19% Similarity=0.220 Sum_probs=102.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCC--------------------CC--------------cccccCcceEEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGE--------------------DT--------------SVISPTLGFNIKTVTY 57 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~--------------------~~--------------~~~~~t~~~~~~~~~~ 57 (185)
.....+..+|+|+.++|||||+.+|... +. +..+-|+.+....++.
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 3556789999999999999999887320 00 0111133333444555
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc---ccHHH--HHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---RRLDD--CKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~--~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
....+.++|.||+..|..........+|+.++|+|++-. ..|+. .......+++... -..+||++||.|+.+.
T Consensus 253 ~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 253 KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDLVSW 330 (603)
T ss_pred CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccccCc
Confidence 678999999999999998888888999999999999852 22221 1122233344333 3568999999999876
Q ss_pred CCHH--HHH----Hhc-CcccccCccceEEEeecccCCCCHHH
Q 029920 133 LTPT--EIA----KVL-NLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 133 ~~~~--~~~----~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
.+.+ ++. ..+ ....+.. ..+.|++||+..|+|+-.
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~e-s~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKE-SSVKFIPISGLSGENLIK 372 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCccc-CCcceEecccccCCcccc
Confidence 4332 222 233 2222333 456899999999998854
No 290
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=5.2e-13 Score=106.94 Aligned_cols=160 Identities=22% Similarity=0.203 Sum_probs=105.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEE----------------EcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVT----------------YQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~ 71 (185)
.-+.+-+||+|+..+|||-|+..+.+.+.... ...++.++.... +.---+.++||||++
T Consensus 472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 33456799999999999999999988665321 122222221111 111347899999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCC----C---------
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDL---RRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GAL----T--------- 134 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~----~--------- 134 (185)
.|..++.....-||..|+|+|+.+. .+.+. ..+++. .+.|+||.+||+|.. ... .
T Consensus 552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiES-----i~lLR~---rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ 623 (1064)
T KOG1144|consen 552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-----INLLRM---RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQ 623 (1064)
T ss_pred hhhhhhhccccccceEEEEeehhccCCcchhHH-----HHHHHh---cCCCeEEeehhhhhhcccccCCCchHHHHHHHh
Confidence 9999999999999999999999863 33333 222333 379999999999943 210 0
Q ss_pred ----HHH-------HHHhcCccc-----ccC----ccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 135 ----PTE-------IAKVLNLEA-----MDK----TRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 135 ----~~~-------~~~~~~~~~-----~~~----~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
..+ +...++.+. +.. ..-+.++++||..|.||.+|+.+|++.-+..
T Consensus 624 ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~ 689 (1064)
T KOG1144|consen 624 KKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT 689 (1064)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence 001 111111111 111 1235689999999999999999999876544
No 291
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=2.6e-12 Score=95.19 Aligned_cols=160 Identities=19% Similarity=0.170 Sum_probs=97.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc------ccccCcce----EEEEEE---------EcCeEEEEEEcCCchhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS------VISPTLGF----NIKTVT---------YQKYTLNIWDVGGQRTI 73 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~------~~~~t~~~----~~~~~~---------~~~~~~~~~D~~g~~~~ 73 (185)
..-++++.++|+..||||||.++|..-.-. ..+.+.+. ....+. .+..++.++|.||+...
T Consensus 4 ~p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasL 83 (522)
T KOG0461|consen 4 PPSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASL 83 (522)
T ss_pred CCceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHH
Confidence 345699999999999999999998643221 11111221 111221 13478999999999887
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc------Ccccc
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL------NLEAM 147 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~------~~~~~ 147 (185)
-........-.|..++|+|+.....-+.+.-.+. ... .....+||+||+|...+.......+.. ..+..
T Consensus 84 IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii---g~~--~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t 158 (522)
T KOG0461|consen 84 IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII---GEL--LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLEST 158 (522)
T ss_pred HHHHHhhhheeeeeeEEEehhcccccccchhhhh---hhh--hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhc
Confidence 7666666677799999999986432222211111 111 134578888998865543322211111 11222
Q ss_pred cCccceEEEeecccCC----CCHHHHHHHHHHHH
Q 029920 148 DKTRHWKIVGCSAYTG----EGLLEGFDWLVQDI 177 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~~~----~~i~~l~~~l~~~~ 177 (185)
....+.|++++||..| +++.++.+.|.+.+
T Consensus 159 ~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i 192 (522)
T KOG0461|consen 159 GFDGNSPIVEVSAADGYFKEEMIQELKEALESRI 192 (522)
T ss_pred CcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence 3334589999999999 56666666665554
No 292
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.9e-12 Score=97.66 Aligned_cols=154 Identities=19% Similarity=0.088 Sum_probs=111.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
.|+-.|+-.-|||||+.++.+.... ...-|+...+......+....++|.||++++-......+...|..++|+
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV 81 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV 81 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence 4778899999999999999987663 2233555666666667779999999999999988888888999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
|+++.-..+ ..+. ..++.... ....++|+||+|..+....+........... ....+++.+|+.+|.||++|.+
T Consensus 82 ~~deGl~~q-tgEh-L~iLdllg--i~~giivltk~D~~d~~r~e~~i~~Il~~l~--l~~~~i~~~s~~~g~GI~~Lk~ 155 (447)
T COG3276 82 AADEGLMAQ-TGEH-LLILDLLG--IKNGIIVLTKADRVDEARIEQKIKQILADLS--LANAKIFKTSAKTGRGIEELKN 155 (447)
T ss_pred eCccCcchh-hHHH-HHHHHhcC--CCceEEEEeccccccHHHHHHHHHHHHhhcc--cccccccccccccCCCHHHHHH
Confidence 997532211 1111 22333322 3457999999999876444333333222111 3677889999999999999999
Q ss_pred HHHHHH
Q 029920 172 WLVQDI 177 (185)
Q Consensus 172 ~l~~~~ 177 (185)
.|.+..
T Consensus 156 ~l~~L~ 161 (447)
T COG3276 156 ELIDLL 161 (447)
T ss_pred HHHHhh
Confidence 999887
No 293
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.43 E-value=3.2e-12 Score=94.88 Aligned_cols=151 Identities=14% Similarity=0.115 Sum_probs=100.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc------------------------------------ccccCcceEEEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS------------------------------------VISPTLGFNIKTVT 56 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~------------------------------------~~~~t~~~~~~~~~ 56 (185)
.+..+|.+-||...=||||||-+|....-. +.+-|+.+.++.+.
T Consensus 3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs 82 (431)
T COG2895 3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS 82 (431)
T ss_pred cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence 456789999999999999999998532110 11225555666667
Q ss_pred EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920 57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP- 135 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~- 135 (185)
....+|.+.||||++.+...+.-....||+.|+++|+... .......-..+..... -..+++..||+||.+-.+.
T Consensus 83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLG--IrhvvvAVNKmDLvdy~e~~ 158 (431)
T COG2895 83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLG--IRHVVVAVNKMDLVDYSEEV 158 (431)
T ss_pred cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhC--CcEEEEEEeeecccccCHHH
Confidence 7788999999999999988887778889999999999642 2221111122222221 3568899999999865332
Q ss_pred -HHHHHhcCc-ccccCccceEEEeecccCCCCHH
Q 029920 136 -TEIAKVLNL-EAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 136 -~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+++...+.. ...-......++++||..|.|+-
T Consensus 159 F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 159 FEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 233332211 11111244589999999999873
No 294
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.42 E-value=1.4e-12 Score=92.95 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=84.9
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc--c---c----c--------cCcceEEEEEE---------------
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS--V---I----S--------PTLGFNIKTVT--------------- 56 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~---~----~--------~t~~~~~~~~~--------------- 56 (185)
+...+.....|+++|++|+|||||++++...... . . . ...+.....+.
T Consensus 15 ~~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~ 94 (207)
T TIGR00073 15 ERLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHA 94 (207)
T ss_pred HHhhhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHH
Confidence 3444667889999999999999999998543110 0 0 0 00000000000
Q ss_pred -----EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 57 -----YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 57 -----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
..+..+.+++|.|.-.... .+-...+..+.|+|+.+.+... .. .......|.++++||+|+..
T Consensus 95 l~~~~~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~-------~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 95 LEDLPLDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LK-------YPGMFKEADLIVINKADLAE 162 (207)
T ss_pred HHHhccCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hh-------hHhHHhhCCEEEEEHHHccc
Confidence 0123566666666110000 1111235556677776533211 00 01112467899999999965
Q ss_pred CCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 132 ALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
... ..+....+... ....+++++||+++.|++++++++.+..
T Consensus 163 ~~~~~~~~~~~~l~~~----~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 163 AVGFDVEKMKADAKKI----NPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred cchhhHHHHHHHHHHh----CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 322 22333332211 1457899999999999999999998754
No 295
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=1.9e-12 Score=94.97 Aligned_cols=159 Identities=19% Similarity=0.161 Sum_probs=106.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc------Cc--c------------------eEEEEEEEcC------eE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP------TL--G------------------FNIKTVTYQK------YT 61 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~------t~--~------------------~~~~~~~~~~------~~ 61 (185)
...++|.++|+..-|||||..+|.|--...-+. ++ + .........+ ..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 567999999999999999999997743321110 00 0 0000011111 46
Q ss_pred EEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHH
Q 029920 62 LNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTE 137 (185)
Q Consensus 62 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~ 137 (185)
+.++|.||++-.-+.+.....-.|+.++|++++.+-.-....+.+..+ .... -..++++=||+|+.+.+. .++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIig--ik~iiIvQNKIDlV~~E~AlE~y~q 164 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIG--IKNIIIVQNKIDLVSRERALENYEQ 164 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhc--cceEEEEecccceecHHHHHHHHHH
Confidence 789999999987666666566679999999999854444444444443 2111 357999999999977533 233
Q ss_pred HHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 138 IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+.++..-. ++ .+.|++++||..+.|++.+++.|.+.+.
T Consensus 165 Ik~FvkGt-~A--e~aPIIPiSA~~~~NIDal~e~i~~~Ip 202 (415)
T COG5257 165 IKEFVKGT-VA--ENAPIIPISAQHKANIDALIEAIEKYIP 202 (415)
T ss_pred HHHHhccc-cc--CCCceeeehhhhccCHHHHHHHHHHhCC
Confidence 44333321 11 4679999999999999999999998875
No 296
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.41 E-value=1.9e-12 Score=107.73 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=77.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc------------c-------ccCcceEEEEEEE----cCeEEEEEEcCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV------------I-------SPTLGFNIKTVTY----QKYTLNIWDVGG 69 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~------------~-------~~t~~~~~~~~~~----~~~~~~~~D~~g 69 (185)
.++..+|+++|+.++|||||+++|+...-.. . .-|+......+.+ .+..++++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 4556679999999999999999986422100 0 0111111112222 467899999999
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
+..|.......+..+|++++|+|+......+ ....+...... +.|.|+++||+|..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~-t~~~~~~~~~~----~~~~iv~iNK~D~~ 152 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQ-TETVLRQALRE----RVKPVLFINKVDRL 152 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCcc-HHHHHHHHHHc----CCCeEEEEECchhh
Confidence 9999888888899999999999998743222 22333333232 56789999999975
No 297
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.41 E-value=5.9e-12 Score=95.67 Aligned_cols=78 Identities=22% Similarity=0.286 Sum_probs=54.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-----------------eEEEEEEcCCchh----
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRT---- 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~---- 72 (185)
++|+++|.||+|||||+|+|++.... ....|.......+.+.+ .++.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 78999999999999999999987742 12234343333333322 2589999999432
Q ss_pred ---hHHHHHhhhcCCCEEEEEEeCC
Q 029920 73 ---IRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 73 ---~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 2233444578999999999985
No 298
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.40 E-value=9.5e-12 Score=93.44 Aligned_cols=108 Identities=22% Similarity=0.178 Sum_probs=65.3
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 137 (185)
.++.+.++||+|..... ......+|.++++.+.... +.+......+ .++|.++++||+|+........
T Consensus 125 ~g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~---~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~ 192 (300)
T TIGR00750 125 AGYDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTG---DDLQGIKAGL------MEIADIYVVNKADGEGATNVTI 192 (300)
T ss_pred CCCCEEEEeCCCCchhh---hHHHHhhceEEEEecCCcc---HHHHHHHHHH------hhhccEEEEEcccccchhHHHH
Confidence 35789999999954222 2345677888887543322 3322222222 2577899999999876543222
Q ss_pred HHHhc--Ccccc-cC--ccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 138 IAKVL--NLEAM-DK--TRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 138 ~~~~~--~~~~~-~~--~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
....+ ..... .. ....+++++||+++.|++++++++.+..
T Consensus 193 ~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 193 ARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 00011 11 0123689999999999999999998864
No 299
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.40 E-value=6e-12 Score=97.85 Aligned_cols=131 Identities=20% Similarity=0.302 Sum_probs=94.7
Q ss_pred CcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc----------ccHHHHHHHHHHHHhcccc
Q 029920 47 TLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL----------RRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 47 t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~ 115 (185)
|.|+....+.+ ++..+.++|++|+...+..|..++.+.+++|||+++++- -.+.+....+..+......
T Consensus 222 T~Gi~e~~f~~~~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~ 301 (389)
T PF00503_consen 222 TTGITEIDFNFSGSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWF 301 (389)
T ss_dssp -SSEEEEEEEE-TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGG
T ss_pred CCCeeEEEEEeecccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccc
Confidence 56666777788 889999999999999999999999999999999998742 2467778888999888777
Q ss_pred CCCeEEEEeecCCCCCC--------------------CCHHHHHHhcCccc---ccCc---cceEEEeecccCCCCHHHH
Q 029920 116 SGASLLILANKQDINGA--------------------LTPTEIAKVLNLEA---MDKT---RHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~~--------------------~~~~~~~~~~~~~~---~~~~---~~~~~~~~Sa~~~~~i~~l 169 (185)
.+.|+||++||.|+... ...+.....+.... .... ..+.+..++|.+..++..+
T Consensus 302 ~~~~iil~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v 381 (389)
T PF00503_consen 302 KNTPIILFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKV 381 (389)
T ss_dssp TTSEEEEEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHH
T ss_pred ccCceEEeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHH
Confidence 89999999999995321 01111111111111 1111 4456778999999999999
Q ss_pred HHHHHHHH
Q 029920 170 FDWLVQDI 177 (185)
Q Consensus 170 ~~~l~~~~ 177 (185)
|+.+.+.+
T Consensus 382 ~~~v~~~i 389 (389)
T PF00503_consen 382 FNAVKDII 389 (389)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCcC
Confidence 98887654
No 300
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.40 E-value=3.3e-12 Score=90.33 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=61.8
Q ss_pred eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE--EEEeecCCCCCC--CCH
Q 029920 60 YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL--LILANKQDINGA--LTP 135 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~--ivv~nK~D~~~~--~~~ 135 (185)
....++++.|..-...... .-+|.++.|+|+.+.++... .. ..++.. ++++||+|+.+. ...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~---------~~qi~~ad~~~~~k~d~~~~~~~~~ 157 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KG---------GPGITRSDLLVINKIDLAPMVGADL 157 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hh---------HhHhhhccEEEEEhhhccccccccH
Confidence 4566777777321111111 12578999999987544221 00 012334 899999999753 223
Q ss_pred HHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 136 TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+.+.+..... ....+++++||++|.|++++++++.+.+.
T Consensus 158 ~~~~~~~~~~----~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 158 GVMERDAKKM----RGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHh----CCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3333322221 14678999999999999999999987654
No 301
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.38 E-value=9.6e-12 Score=94.60 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=80.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-ccCc---c--eEEEEEEEc-CeEEEEEEcCCchhhHHHHHhh-----
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SPTL---G--FNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNY----- 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~t~---~--~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~----- 80 (185)
...+++|+|+|.+|+|||||||+|.|-..... .... . .....+... .-.+.+||.||..........|
T Consensus 32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45679999999999999999999987543211 1111 1 111222222 2469999999965544444444
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---------CCCCHH----HHHHhcCccc-
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---------GALTPT----EIAKVLNLEA- 146 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---------~~~~~~----~~~~~~~~~~- 146 (185)
+...|.+|++.+- .|....-++...+... ++|+.+|-+|+|.. .....+ ++.+.+....
T Consensus 112 ~~~yD~fiii~s~----rf~~ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~ 184 (376)
T PF05049_consen 112 FYRYDFFIIISSE----RFTENDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQ 184 (376)
T ss_dssp GGG-SEEEEEESS----S--HHHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCC----CCchhhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHH
Confidence 4567988887654 3544444444444443 79999999999951 111211 2222221111
Q ss_pred ccCccceEEEeecccCCC--CHHHHHHHHHHHHh
Q 029920 147 MDKTRHWKIVGCSAYTGE--GLLEGFDWLVQDIA 178 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~~~~--~i~~l~~~l~~~~~ 178 (185)
-......++|-+|+.+-. +...|.+.|.+-+.
T Consensus 185 k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp 218 (376)
T PF05049_consen 185 KAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLP 218 (376)
T ss_dssp CTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-
T ss_pred HcCCCcCceEEEeCCCcccCChHHHHHHHHHHhH
Confidence 112245678999998754 57777777776554
No 302
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.38 E-value=6.2e-12 Score=92.59 Aligned_cols=76 Identities=22% Similarity=0.275 Sum_probs=53.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcC-----------------eEEEEEEcCCch-------
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQR------- 71 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~------- 71 (185)
|+++|.||+|||||+|+|++..... ...|.......+.+.+ .++.++|+||..
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999977631 2334444444444432 259999999932
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
.........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 22333444568899999999974
No 303
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.35 E-value=7.4e-12 Score=89.09 Aligned_cols=155 Identities=18% Similarity=0.178 Sum_probs=101.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFE 82 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~ 82 (185)
++..-+|+++|.|.+|||||+..+..-+-. ....|.......+.+++-.+++.|.||.-+ ...+.....+
T Consensus 59 KsGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 59 KSGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred ccCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEee
Confidence 345679999999999999999999865543 223444455566888999999999999433 2233444567
Q ss_pred CCCEEEEEEeCCCcccHHHHH-H----------------------------------------HHHHHHhcc--------
Q 029920 83 QTDGLVWVVDSSDLRRLDDCK-M----------------------------------------ELDNLLKEE-------- 113 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~-~----------------------------------------~~~~~~~~~-------- 113 (185)
.+|.++.|.|++..+.-.... . .+..++...
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999998754211111 0 111111100
Q ss_pred ----------------ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 114 ----------------RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 114 ----------------~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
.....+++.|-||+|..+- +++.. ++ .....+.+|+.-+.|++.+++.+.+.+
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~---eevdr-lA-------r~PnsvViSC~m~lnld~lle~iWe~l 287 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSI---EEVDR-LA-------RQPNSVVISCNMKLNLDRLLERIWEEL 287 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccceecH---HHHHH-Hh-------cCCCcEEEEeccccCHHHHHHHHHHHh
Confidence 0012467888899997543 22222 22 223458899999999999999998876
Q ss_pred h
Q 029920 178 A 178 (185)
Q Consensus 178 ~ 178 (185)
.
T Consensus 288 ~ 288 (364)
T KOG1486|consen 288 N 288 (364)
T ss_pred c
Confidence 4
No 304
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.35 E-value=5.7e-12 Score=92.62 Aligned_cols=152 Identities=22% Similarity=0.245 Sum_probs=102.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCC---cccccCcceEEEEEEE-cCeEEEEEEcCCc---------hhhHHHHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT---SVISPTLGFNIKTVTY-QKYTLNIWDVGGQ---------RTIRSYWR 78 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~---~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~---------~~~~~~~~ 78 (185)
......-|+|+|-.|||||||+++|++-.. .....|...+.+.... ++..+.+.||.|. ..|.+..+
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLe 253 (410)
T KOG0410|consen 174 EGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLE 253 (410)
T ss_pred ccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence 345567899999999999999999985444 2445566666665554 4467888999993 33444443
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe----EEEEeecCCCCCCCCHHHHHHhcCcccccCccceE
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS----LLILANKQDINGALTPTEIAKVLNLEAMDKTRHWK 154 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
. ...+|.++-|.|+++|..-.. .......+.....+..| ++=|=||+|..+.....+- +.
T Consensus 254 e-VaeadlllHvvDiShP~ae~q-~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~------------n~-- 317 (410)
T KOG0410|consen 254 E-VAEADLLLHVVDISHPNAEEQ-RETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEK------------NL-- 317 (410)
T ss_pred H-HhhcceEEEEeecCCccHHHH-HHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcccc------------CC--
Confidence 3 467999999999999864333 33344455554443333 5566677776544222111 11
Q ss_pred EEeecccCCCCHHHHHHHHHHHHhh
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
-+.+||++|.|++++.+.+-..+..
T Consensus 318 ~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 318 DVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred ccccccccCccHHHHHHHHHHHhhh
Confidence 5889999999999999988777654
No 305
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.3e-11 Score=92.64 Aligned_cols=114 Identities=19% Similarity=0.263 Sum_probs=82.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHh--CCCCc-------------ccc------c----CcceEEEEEEEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKIN--GEDTS-------------VIS------P----TLGFNIKTVTYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~--~~~~~-------------~~~------~----t~~~~~~~~~~~~~~~~~~D~ 67 (185)
-.++.+.+|+-+|.+|||||-+.|. |+.+. ..+ . ++......+.+++..+++.||
T Consensus 9 v~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDT 88 (528)
T COG4108 9 VARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDT 88 (528)
T ss_pred HhhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCC
Confidence 4455678899999999999998862 22221 011 1 222445567889999999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
||++.|..-.-..+..+|.++.|+|+...-.-+ . .+++.-+...++|++-++||.|...
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~q--T---~KLfeVcrlR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQ--T---LKLFEVCRLRDIPIFTFINKLDREG 147 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccHH--H---HHHHHHHhhcCCceEEEeecccccc
Confidence 999999988888889999999999998642212 1 2223333445899999999999764
No 306
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.34 E-value=1.2e-10 Score=84.30 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=79.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc-------c-------CcceEEE--------------------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-------P-------TLGFNIK-------------------------- 53 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-------~-------t~~~~~~-------------------------- 53 (185)
-..++++|+|+.|+||||+++++.+..+.... | .......
T Consensus 24 i~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999886521000 0 0000000
Q ss_pred ------------EEEE---cCeEEEEEEcCCchh-------------hHHHHHhhhc-CCCEEEEEEeCCCcccHHHHHH
Q 029920 54 ------------TVTY---QKYTLNIWDVGGQRT-------------IRSYWRNYFE-QTDGLVWVVDSSDLRRLDDCKM 104 (185)
Q Consensus 54 ------------~~~~---~~~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~s~~~~~~ 104 (185)
.+++ +-..+.++||||... ...+...|++ ..+++++|+|+...-.-.....
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 0011 115789999999531 2235566777 4468999999875211112112
Q ss_pred HHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920 105 ELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..+.+ ...+.|+++|+||+|..+.... +...+..+.....++|..+.
T Consensus 184 ia~~l----d~~~~rti~ViTK~D~~~~~~~--~~~~~~~~~~~l~~g~~~v~ 230 (240)
T smart00053 184 LAKEV----DPQGERTIGVITKLDLMDEGTD--ARDILENKLLPLRRGYIGVV 230 (240)
T ss_pred HHHHH----HHcCCcEEEEEECCCCCCccHH--HHHHHhCCccccCCCEEEEE
Confidence 11222 2237899999999998764322 44444444444345555443
No 307
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.34 E-value=3.3e-11 Score=88.74 Aligned_cols=164 Identities=17% Similarity=0.211 Sum_probs=105.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE----cCeEEEEEEcCCchhhHHHHHhhhcCC----CEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY----QKYTLNIWDVGGQRTIRSYWRNYFEQT----DGL 87 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~----~~~~~~~~D~~g~~~~~~~~~~~~~~~----d~~ 87 (185)
.-+|+|+|+.++|||||+.+|.+........-.++-+-.+.. +-..+.+|-.-|......+....+... ..+
T Consensus 52 gk~VlvlGdn~sGKtsLi~klqg~e~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aetlv 131 (473)
T KOG3905|consen 52 GKNVLVLGDNGSGKTSLISKLQGSETVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAETLV 131 (473)
T ss_pred CCeEEEEccCCCchhHHHHHhhcccccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccceEE
Confidence 457999999999999999999998744443333333332222 225788999988877677766666443 578
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhcc------------------------------c-----------------------
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEE------------------------------R----------------------- 114 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~------------------------------~----------------------- 114 (185)
|++.|+++|..+-+..+.|..++... .
T Consensus 132 iltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llP 211 (473)
T KOG3905|consen 132 ILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLP 211 (473)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccc
Confidence 89999999854433322222221100 0
Q ss_pred --------cCCCeEEEEeecCCCCCCCC-----HHHHHHhcC--cccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 115 --------LSGASLLILANKQDINGALT-----PTEIAKVLN--LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 115 --------~~~~~~ivv~nK~D~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.-++|++||.+|||...-.+ ..+-..+++ .-.++...+...+.+|++...||+-+...|++....
T Consensus 212 L~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG 291 (473)
T KOG3905|consen 212 LGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYG 291 (473)
T ss_pred cCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcC
Confidence 01578999999999843211 111111111 112333467789999999999999999998887643
No 308
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.34 E-value=5.5e-11 Score=90.84 Aligned_cols=142 Identities=17% Similarity=0.171 Sum_probs=83.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCC----CCc-----------ccccCcc-------eEE---EEEEE-----cCeE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGE----DTS-----------VISPTLG-------FNI---KTVTY-----QKYT 61 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~----~~~-----------~~~~t~~-------~~~---~~~~~-----~~~~ 61 (185)
+-...+-|+|+|+.++|||||+|+|.+. ... ..++..| ... +.+++ -..+
T Consensus 13 RT~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~ 92 (492)
T TIGR02836 13 RTQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFK 92 (492)
T ss_pred HhCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCccc
Confidence 3556899999999999999999999887 333 2222222 112 22222 2368
Q ss_pred EEEEEcCCchh--------hHH---------------------HHHhhhc-CCCEEEEEE-eCC----CcccHHHHHHHH
Q 029920 62 LNIWDVGGQRT--------IRS---------------------YWRNYFE-QTDGLVWVV-DSS----DLRRLDDCKMEL 106 (185)
Q Consensus 62 ~~~~D~~g~~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~ 106 (185)
++++||+|-.. -.. =.+..+. ++|+.++|. |.+ .++.+......+
T Consensus 93 VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~ 172 (492)
T TIGR02836 93 VRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERV 172 (492)
T ss_pred EEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHH
Confidence 99999999111 000 0334455 899999998 775 123344433333
Q ss_pred HHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 107 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
...++. .++|+++++||.|..... ..++...+.. . .+.|++.+|+..
T Consensus 173 i~eLk~---~~kPfiivlN~~dp~~~e-t~~l~~~l~e-k----y~vpvl~v~c~~ 219 (492)
T TIGR02836 173 IEELKE---LNKPFIILLNSTHPYHPE-TEALRQELEE-K----YDVPVLAMDVES 219 (492)
T ss_pred HHHHHh---cCCCEEEEEECcCCCCch-hHHHHHHHHH-H----hCCceEEEEHHH
Confidence 333333 389999999999944322 2222222211 1 345667776654
No 309
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.9e-11 Score=99.99 Aligned_cols=115 Identities=24% Similarity=0.214 Sum_probs=84.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC--cc---------c----------ccCcceEEEEEEEcC-eEEEEEEcCCc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--SV---------I----------SPTLGFNIKTVTYQK-YTLNIWDVGGQ 70 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~~---------~----------~~t~~~~~~~~~~~~-~~~~~~D~~g~ 70 (185)
.++..+|+++|+-.+|||||..++.-..- .. . .-|+......+.+.+ +.++++||||+
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 55678899999999999999999742111 00 0 112223333567785 99999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
-+|.......++-+|++++|+|+...-..+. ...|++..+ .++|.++++||+|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QT-Etv~rqa~~----~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQT-ETVWRQADK----YGVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecH-HHHHHHHhh----cCCCeEEEEECcccccc
Confidence 9999999999999999999999997544333 223344333 47999999999997654
No 310
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.32 E-value=7.2e-12 Score=91.37 Aligned_cols=95 Identities=17% Similarity=0.105 Sum_probs=70.5
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhcCccccc
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVLNLEAMD 148 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 148 (185)
+++..+...+++++|.+++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+..... +....+ .
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~-----~ 94 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIY-----R 94 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHH-----H
Confidence 445555666889999999999999877 88888887765432 479999999999996532221 222222 1
Q ss_pred CccceEEEeecccCCCCHHHHHHHHHH
Q 029920 149 KTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
. .+.+++.+||++|.|++++++.+.+
T Consensus 95 ~-~g~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 95 N-IGYQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred H-CCCeEEEEecCCchhHHHHHhhhcC
Confidence 2 4568999999999999999988764
No 311
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.30 E-value=1.2e-11 Score=86.81 Aligned_cols=160 Identities=21% Similarity=0.316 Sum_probs=103.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC----CcccccCcceEEEEEEE-cCeEEEEEEcCCchhhHH-----HHHhhhcCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED----TSVISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRS-----YWRNYFEQTD 85 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~----~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d 85 (185)
.-||+++|.+|+|||++=..+..+. ....+.|+.++-..+++ ++..+.+||.+|++.+-. .....+...+
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 3589999999999999877666544 34556677776666665 558999999999985432 2334578899
Q ss_pred EEEEEEeCCCcccHH---HHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--cccccCccceEEEeecc
Q 029920 86 GLVWVVDSSDLRRLD---DCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--LEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Sa 160 (185)
++++|+|+...+-.. ....-+..+++ ..|...+.+.++|.|+......+.+-+.-. .........+.++++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~--~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQ--NSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHh--cCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 999999998754222 22223333333 345678999999999976544443222111 11122235577888887
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 029920 161 YTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (185)
.+.. +...|..+.....
T Consensus 162 wDet-l~KAWS~iv~~li 178 (295)
T KOG3886|consen 162 WDET-LYKAWSSIVYNLI 178 (295)
T ss_pred hhHH-HHHHHHHHHHhhC
Confidence 7653 5555665555443
No 312
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.29 E-value=6.7e-12 Score=89.65 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=99.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCCE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTDG 86 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d~ 86 (185)
-+|.++|.|.+||||++..|.+-..+. ...+.......+.+++-.+++.|.||.-+ ...+.....+.|..
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnl 139 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNL 139 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccE
Confidence 489999999999999999998865532 22344344455668888999999999432 23344555678999
Q ss_pred EEEEEeCCCcccHHHH-----------------------------------------HHHHH------------------
Q 029920 87 LVWVVDSSDLRRLDDC-----------------------------------------KMELD------------------ 107 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~-----------------------------------------~~~~~------------------ 107 (185)
+++|.|+..|-+...+ ...+.
T Consensus 140 i~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~D 219 (358)
T KOG1487|consen 140 IFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDATAD 219 (358)
T ss_pred EEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCcchh
Confidence 9999998876422111 11111
Q ss_pred ---HHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 108 ---NLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 108 ---~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
..+..+ ...+|.+.++||+|...-++. ...+ .....+++||.+++|++++++.+.+.+.
T Consensus 220 dLIdvVegn-r~yVp~iyvLNkIdsISiEEL---dii~--------~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 220 DLIDVVEGN-RIYVPCIYVLNKIDSISIEEL---DIIY--------TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred hhhhhhccC-ceeeeeeeeecccceeeeecc---ceee--------eccceeecccccccchHHHHHHHhhcch
Confidence 111110 013689999999997554222 2111 3445799999999999999999887653
No 313
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.6e-11 Score=85.85 Aligned_cols=165 Identities=19% Similarity=0.292 Sum_probs=108.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH---HHHhhhcCCCEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS---YWRNYFEQTDGLV 88 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i 88 (185)
..+|+++|...||||++-+-...+..+ ...+|...+...+...-..+++||.||+-.+.. -.+..++++.+++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi 106 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI 106 (347)
T ss_pred CceEEEEeecccCcchhhheeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence 367999999999999998776665444 334555555555555557899999999765432 2455688999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhc--cccCCCeEEEEeecCCCCCC-CCH---HHHHH----hcCcccccCccceEEEee
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKE--ERLSGASLLILANKQDINGA-LTP---TEIAK----VLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~~~~ivv~nK~D~~~~-~~~---~~~~~----~~~~~~~~~~~~~~~~~~ 158 (185)
+|+|+.+. +.+....+.....+ ...+++.+-|.+.|.|.... ... +.+-+ .+....+.. ....|.-+
T Consensus 107 fvIDaQdd--y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~-v~vsf~LT 183 (347)
T KOG3887|consen 107 FVIDAQDD--YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK-VQVSFYLT 183 (347)
T ss_pred EEEechHH--HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc-ceEEEEEe
Confidence 99999873 34444444444332 34568899999999996543 221 12222 222222222 45567777
Q ss_pred cccCCCCHHHHHHHHHHHHhhhcccC
Q 029920 159 SAYTGEGLLEGFDWLVQDIASRIYLL 184 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~~~~~ 184 (185)
|-.+. .|-|.|..+++.+.++.+.+
T Consensus 184 SIyDH-SIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 184 SIYDH-SIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred eecch-HHHHHHHHHHHHHhhhchhH
Confidence 77665 58888998888887776654
No 314
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.28 E-value=1.4e-12 Score=96.01 Aligned_cols=56 Identities=27% Similarity=0.315 Sum_probs=39.8
Q ss_pred CCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 117 GASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 117 ~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
...-++|+||+|+.+.. ..+.....+... ....+++++||++|.|++++.+||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~l----np~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREV----NPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhh----CCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999997532 233333332211 146789999999999999999999774
No 315
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.27 E-value=1.6e-10 Score=92.91 Aligned_cols=115 Identities=15% Similarity=0.141 Sum_probs=73.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhH----------HHHHhhh
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIR----------SYWRNYF 81 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 81 (185)
.++|+++|.+|+||||++|+|++....... .|..........++..+.++||||..... .....++
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~L 197 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKFI 197 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHHH
Confidence 468999999999999999999998653222 22222222334577899999999955321 1122233
Q ss_pred c--CCCEEEEEEeCCCcccH-H--HHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 82 E--QTDGLVWVVDSSDLRRL-D--DCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 82 ~--~~d~~i~v~d~~~~~s~-~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
. .+|++|+|..+...... + .+...++.++.... -..+|||+|..|...+
T Consensus 198 sk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 198 KKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred hcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 3 57999999987643221 1 23344444444321 1468999999997653
No 316
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.26 E-value=2.6e-11 Score=87.27 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=86.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC------CCCc-----------------------ccccCcceEEEEEEE------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING------EDTS-----------------------VISPTLGFNIKTVTY------ 57 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~-----------------------~~~~t~~~~~~~~~~------ 57 (185)
..+.+.|.+-|+||+|||||++.|.. .+.. ......+...+.+-.
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG 105 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG 105 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence 44678999999999999999999832 1110 011122344444321
Q ss_pred --------------cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 58 --------------QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 58 --------------~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
.++.+.++.|.|.-.-. .....-+|.+++|.-....+..+..+.-+.+ +.=++|
T Consensus 106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~v 173 (266)
T PF03308_consen 106 LSRATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIME---------IADIFV 173 (266)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEE
T ss_pred ccHhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhh---------hccEEE
Confidence 35788999998743222 2234678999999887665555544333333 345789
Q ss_pred eecCCCCCCCC-HHHHHHhcCcccc-cCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 124 ANKQDINGALT-PTEIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 124 ~nK~D~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
+||+|...... ..++...+....- ...-..|++.+||.++.|++++++.|.+..
T Consensus 174 VNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 174 VNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99999543211 1222222221111 111235899999999999999999988754
No 317
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.26 E-value=9e-11 Score=87.06 Aligned_cols=120 Identities=18% Similarity=0.243 Sum_probs=66.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccc-----------cCcceEEEE--EEEcC--eEEEEEEcCCchh-------h
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS-----------PTLGFNIKT--VTYQK--YTLNIWDVGGQRT-------I 73 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----------~t~~~~~~~--~~~~~--~~~~~~D~~g~~~-------~ 73 (185)
.++|+|+|.+|+|||||+|.|++....... .+..+.... +..++ ..+.++||||... +
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 689999999999999999999987653221 122222222 22233 5789999999221 0
Q ss_pred HH-------HHHhhh-------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 74 RS-------YWRNYF-------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 74 ~~-------~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
.. ....++ ...|+++|.++.+.. .+....-....-+. ...++|-|+.|+|.....
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~-~L~~~Di~~mk~Ls----~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGH-GLKPLDIEFMKRLS----KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSS-SS-HHHHHHHHHHT----TTSEEEEEESTGGGS-HH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCc-cchHHHHHHHHHhc----ccccEEeEEecccccCHH
Confidence 00 011111 245999999998753 22222111122222 248899999999986654
Q ss_pred CHHHHHH
Q 029920 134 TPTEIAK 140 (185)
Q Consensus 134 ~~~~~~~ 140 (185)
+....+.
T Consensus 159 el~~~k~ 165 (281)
T PF00735_consen 159 ELQAFKQ 165 (281)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
No 318
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.23 E-value=9.1e-11 Score=80.83 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=42.7
Q ss_pred eEEEEEEcCCchh----hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 60 YTLNIWDVGGQRT----IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 60 ~~~~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
..+.++||||... .......+++.+|++++|.+++...+-..... +...... ....+++|.||+
T Consensus 101 ~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~-l~~~~~~---~~~~~i~V~nk~ 168 (168)
T PF00350_consen 101 RNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEF-LKQMLDP---DKSRTIFVLNKA 168 (168)
T ss_dssp CSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHH-HHHHHTT---TCSSEEEEEE-G
T ss_pred cceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHH-HHHHhcC---CCCeEEEEEcCC
Confidence 3588999999533 23567888899999999999998544343322 2333232 245599999984
No 319
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.22 E-value=6.3e-11 Score=94.35 Aligned_cols=112 Identities=23% Similarity=0.317 Sum_probs=81.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccccc----------------CcceEEEE----E-----EEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----------------TLGFNIKT----V-----TYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----------------t~~~~~~~----~-----~~~~~~~~~~D~ 67 (185)
.....+|+++|+-+.|||+|+..|.....+...+ ..+...+. + +...+-++++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 4556789999999999999999997654432211 11111111 1 113367899999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
||+-.|.......++.+|++++|+|+.+.-++.. ..++++....+.|+.+|+||.|.
T Consensus 205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-----Er~ikhaiq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-----ERIIKHAIQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccchHHHHHHhhhcceEEEEEEcccCceeeH-----HHHHHHHHhccCcEEEEEehhHH
Confidence 9999999999999999999999999998766654 33333333447999999999995
No 320
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.21 E-value=3.3e-11 Score=78.69 Aligned_cols=113 Identities=18% Similarity=0.162 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc-c-cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI-S-PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS 94 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~-~-~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 94 (185)
+|++++|+.|+|||+|+.++....+... . ++.+ +......+.+.++.+++|++..
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~-----------------------~~~~~~~~~~s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG-----------------------IDVYDPTSYESFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh-----------------------hhhccccccCCCCEEEEEEEcc
Confidence 4899999999999999999977766421 1 2222 2222233456789999999999
Q ss_pred CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 95 DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 95 ~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+..+++.. |...+... ...+.|.++++||.|+..... .... ...+++++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~---~~~~---------~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQ---VATE---------EGLEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCc---CCHH---------HHHHHHHHhCCCcchhh
Confidence 98888654 44444333 334688999999999733211 1110 12235788999999874
No 321
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.20 E-value=5e-10 Score=88.08 Aligned_cols=153 Identities=20% Similarity=0.193 Sum_probs=99.6
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-c--ccCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-I--SPTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~--~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
+..++-+++.|+|++++|||.+++++.|+.+.. . +....+....+.. ....+.+.|.+-. ........- ..||
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence 335567899999999999999999999977753 1 1112223333322 3355666666543 222222222 6799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-----CHHHHHHhcCcccccCccceEEEeecc
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-----TPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.++||.+++.+|............. ...|+++|++|+|+.+.. .+.+....++ -.+.+.+|.
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~---~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~--------i~~P~~~S~ 566 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL---YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLG--------LPPPIHISS 566 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc---cCCceEEEeeccccchhhhccCCChHHHHHhcC--------CCCCeeecc
Confidence 999999999999999887765555443 479999999999986543 2233333222 123567777
Q ss_pred cCCCCHHHHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~ 177 (185)
+.... .++|..|+...
T Consensus 567 ~~~~s-~~lf~kL~~~A 582 (625)
T KOG1707|consen 567 KTLSS-NELFIKLATMA 582 (625)
T ss_pred CCCCC-chHHHHHHHhh
Confidence 75333 78888887764
No 322
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=99.20 E-value=2.3e-11 Score=85.69 Aligned_cols=135 Identities=21% Similarity=0.279 Sum_probs=94.1
Q ss_pred cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 029920 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 115 (185)
||.|+....++..+..|++.|.+|+..-+..|.+++++.-.+++.+.++ +...+++....+..++.++..
T Consensus 185 PTTGi~eypfdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF 264 (359)
T KOG0085|consen 185 PTTGIIEYPFDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWF 264 (359)
T ss_pred CcccceecCcchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccc
Confidence 5556655566677789999999999998899999998876666655433 334667778889999999988
Q ss_pred CCCeEEEEeecCCCCCCCCH-HHH---------------------HHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 116 SGASLLILANKQDINGALTP-TEI---------------------AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~~~~~-~~~---------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
.+.++|+.+||-|+.+..-. ..+ ...+............-..++|.+-.||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 99999999999998653111 111 11111111111122334567899999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.+.
T Consensus 345 kDtiLq~ 351 (359)
T KOG0085|consen 345 KDTILQL 351 (359)
T ss_pred HHHHHHh
Confidence 8887653
No 323
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.19 E-value=3.6e-11 Score=82.68 Aligned_cols=79 Identities=20% Similarity=0.174 Sum_probs=50.9
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHh-ccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeeccc
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLK-EERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+.-|+|+|++..+.-.. + .+... ..=++|+||.|+.+.... +......... ..+.|++.+|++
T Consensus 119 ~~~v~VidvteGe~~P~---------K~gP~i~-~aDllVInK~DLa~~v~~dlevm~~da~~~----np~~~ii~~n~k 184 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---------KGGPGIF-KADLLVINKTDLAPYVGADLEVMARDAKEV----NPEAPIIFTNLK 184 (202)
T ss_pred ceEEEEEECCCCCCCcc---------cCCCcee-EeeEEEEehHHhHHHhCccHHHHHHHHHHh----CCCCCEEEEeCC
Confidence 37788888876432110 1 11111 145799999999876444 3333322221 167789999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 029920 162 TGEGLLEGFDWLVQDI 177 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~ 177 (185)
+|+|++++++|+....
T Consensus 185 tg~G~~~~~~~i~~~~ 200 (202)
T COG0378 185 TGEGLDEWLRFIEPQA 200 (202)
T ss_pred CCcCHHHHHHHHHhhc
Confidence 9999999999987654
No 324
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.19 E-value=3.8e-10 Score=88.84 Aligned_cols=163 Identities=16% Similarity=0.252 Sum_probs=102.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc------CeEEEEEEcCCchhhHHHHHhhhcCC----
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ------KYTLNIWDVGGQRTIRSYWRNYFEQT---- 84 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~---- 84 (185)
..-.|+|+|..++|||||+.+|.+.... .++.+..+..++.. ...+.+|-..|...+..+....+...
T Consensus 24 ~~k~vlvlG~~~~GKttli~~L~~~e~~--~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 24 SEKSVLVLGDKGSGKTTLIARLQGIEDP--KKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred CCceEEEEeCCCCchHHHHHHhhccCCC--CCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 4468999999999999999999876433 34444444444331 14688999988777777766655432
Q ss_pred CEEEEEEeCCCcccHHHHH-----------------------------HHHHHHHhcc--c-------------------
Q 029920 85 DGLVWVVDSSDLRRLDDCK-----------------------------MELDNLLKEE--R------------------- 114 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~-----------------------------~~~~~~~~~~--~------------------- 114 (185)
-++++|+|.+.|..+-+.. ..|+.+.+.. .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 5778899999986332111 1111111000 0
Q ss_pred ------------cCCCeEEEEeecCCCCCCCCH-----HHHHHhcC--cccccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 115 ------------LSGASLLILANKQDINGALTP-----TEIAKVLN--LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 115 ------------~~~~~~ivv~nK~D~~~~~~~-----~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.-++|++||.+|+|.....+. ++..+... .-.++-.++...|.+|++...|++.++..|.+
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHH
Confidence 004799999999996432111 11111111 11223337788999999999999999999888
Q ss_pred HHhh
Q 029920 176 DIAS 179 (185)
Q Consensus 176 ~~~~ 179 (185)
.+..
T Consensus 262 ~l~~ 265 (472)
T PF05783_consen 262 RLYG 265 (472)
T ss_pred Hhcc
Confidence 7754
No 325
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=5.2e-10 Score=84.28 Aligned_cols=80 Identities=20% Similarity=0.298 Sum_probs=57.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEE------------------EcCeEEEEEEcCC-----
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVT------------------YQKYTLNIWDVGG----- 69 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~------------------~~~~~~~~~D~~g----- 69 (185)
.++++++|.||+|||||.|+++..... ....|+......+. .....+.++|.+|
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 478999999999999999999876542 11223332222221 1225789999998
Q ss_pred --chhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920 70 --QRTIRSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 70 --~~~~~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
.+.........++.+|+++.|+|+..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f~ 109 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCFG 109 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEecC
Confidence 44566777778899999999999874
No 326
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.16 E-value=1.1e-10 Score=79.60 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=63.0
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH 152 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
++.+.+...+++|++++|+|+.++..... ..+...+. ..++|+++|+||+|+.+......... +. . ..+
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~--~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~-~~----~-~~~ 70 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS--RKLERYVL---ELGKKLLIVLNKADLVPKEVLEKWKS-IK----E-SEG 70 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC--HHHHHHHH---hCCCcEEEEEEhHHhCCHHHHHHHHH-HH----H-hCC
Confidence 34567777888999999999987543222 11222222 23689999999999854322211111 10 1 134
Q ss_pred eEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 153 WKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.+++.+||+++.|++++++.+.+.+.
T Consensus 71 ~~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 71 IPVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred CcEEEEEccccccHHHHHHHHHHHHh
Confidence 57899999999999999999988764
No 327
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.5e-09 Score=79.22 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=99.8
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCC---C----Cc--------cc----ccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGE---D----TS--------VI----SPTLGFNIKTVTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~---~----~~--------~~----~~t~~~~~~~~~~~~~~~~~~D~~g~ 70 (185)
..+.+...+|..+|+-+-|||||-.+++.. . .. .. .-|+......++..+..+.-+|+||+
T Consensus 6 f~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH 85 (394)
T COG0050 6 FERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH 85 (394)
T ss_pred hcCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh
Confidence 344667899999999999999998776421 0 00 01 11222223334556788999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-eEEEEeecCCCCCCCCHH-----HHHHhcCc
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA-SLLILANKQDINGALTPT-----EIAKVLNL 144 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~~~~~~-----~~~~~~~~ 144 (185)
..+-....-...+.|+.|+|+.++|...-+ .++.+.- . ...+. .+++++||+|+.++.+.- ++.+.+..
T Consensus 86 aDYvKNMItgAaqmDgAILVVsA~dGpmPq-TrEHiLl---a-rqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~ 160 (394)
T COG0050 86 ADYVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILL---A-RQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSE 160 (394)
T ss_pred HHHHHHHhhhHHhcCccEEEEEcCCCCCCc-chhhhhh---h-hhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHH
Confidence 998877777778899999999999843222 2221111 1 11245 567788999998754433 23333433
Q ss_pred ccccCccceEEEeecccCCC--------CHHHHHHHHHHHH
Q 029920 145 EAMDKTRHWKIVGCSAYTGE--------GLLEGFDWLVQDI 177 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~--------~i~~l~~~l~~~~ 177 (185)
..+.. .+.|++.-||..-- .|.+|.+.+-+++
T Consensus 161 y~f~g-d~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yi 200 (394)
T COG0050 161 YGFPG-DDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYI 200 (394)
T ss_pred cCCCC-CCcceeechhhhhhcCCcchHHHHHHHHHHHHhcC
Confidence 33333 46778887776532 2455555554444
No 328
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=99.12 E-value=7.4e-10 Score=79.48 Aligned_cols=133 Identities=22% Similarity=0.277 Sum_probs=93.8
Q ss_pred CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHhccccC
Q 029920 47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR----------RLDDCKMELDNLLKEERLS 116 (185)
Q Consensus 47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~~~~~~~~~ 116 (185)
|.|+....+.++.+.|.++|.+|+...+..|..++....++|+|+.+++-. .+++....+..++......
T Consensus 189 TsGIfet~FqVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~ 268 (379)
T KOG0099|consen 189 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLR 268 (379)
T ss_pred ccceeeEEEeccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHh
Confidence 555666677888899999999999999999999999999999999887522 4555666777777766677
Q ss_pred CCeEEEEeecCCCCCCCC------------------------------HHHHHHhc---------CcccccCccceEEEe
Q 029920 117 GASLLILANKQDINGALT------------------------------PTEIAKVL---------NLEAMDKTRHWKIVG 157 (185)
Q Consensus 117 ~~~~ivv~nK~D~~~~~~------------------------------~~~~~~~~---------~~~~~~~~~~~~~~~ 157 (185)
.+.+|+.+||.|+..... .......+ ........+.+.+..
T Consensus 269 tisvIlFLNKqDllaeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHF 348 (379)
T KOG0099|consen 269 TISVILFLNKQDLLAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 348 (379)
T ss_pred hhheeEEecHHHHHHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccce
Confidence 899999999999743100 00000000 000111123445566
Q ss_pred ecccCCCCHHHHHHHHHHHHhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
++|.+-.||..+|+...+.++.
T Consensus 349 TcAvDTenIrrVFnDcrdiIqr 370 (379)
T KOG0099|consen 349 TCAVDTENIRRVFNDCRDIIQR 370 (379)
T ss_pred eEeechHHHHHHHHHHHHHHHH
Confidence 7888889999999998887754
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.10 E-value=3.2e-09 Score=79.68 Aligned_cols=128 Identities=20% Similarity=0.298 Sum_probs=77.5
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-----------cccCcceEEEEE--EEcC--eEEEEEEcCCchhh-
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-----------ISPTLGFNIKTV--TYQK--YTLNIWDVGGQRTI- 73 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-----------~~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~- 73 (185)
.-+..-.++|+++|+.|+||||++|+|++..... ..++..+..... .-++ ..++++||||..++
T Consensus 17 ~~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~i 96 (373)
T COG5019 17 LSKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFI 96 (373)
T ss_pred HHhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccc
Confidence 3345668999999999999999999998874321 223333333332 2233 67899999992221
Q ss_pred -------------HHHHHhhh--------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920 74 -------------RSYWRNYF--------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126 (185)
Q Consensus 74 -------------~~~~~~~~--------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK 126 (185)
..+...|+ ...|+++|.+..+. ..+....-.+..-+.. .+.+|-|+.|
T Consensus 97 dNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~----~vNlIPVI~K 171 (373)
T COG5019 97 DNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK----RVNLIPVIAK 171 (373)
T ss_pred cccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc----ccCeeeeeec
Confidence 11122222 24589999998664 2233322222222222 4789999999
Q ss_pred CCCCCCCCHHHHHHhc
Q 029920 127 QDINGALTPTEIAKVL 142 (185)
Q Consensus 127 ~D~~~~~~~~~~~~~~ 142 (185)
+|.....+....+...
T Consensus 172 aD~lT~~El~~~K~~I 187 (373)
T COG5019 172 ADTLTDDELAEFKERI 187 (373)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9987765655554444
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.10 E-value=4.1e-10 Score=82.32 Aligned_cols=108 Identities=22% Similarity=0.218 Sum_probs=65.9
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHH
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTE 137 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~ 137 (185)
++.+.++.|.|.-.-.. ....-+|.+++|.=.--.+..+..+.-+.+ +-=|+|+||.|....+ -..+
T Consensus 143 G~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimE---------iaDi~vINKaD~~~A~~a~r~ 210 (323)
T COG1703 143 GYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIME---------IADIIVINKADRKGAEKAARE 210 (323)
T ss_pred CCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhh---------hhheeeEeccChhhHHHHHHH
Confidence 47888888887533222 223467888887655444555554443333 3457899999964431 1223
Q ss_pred HHHhcCccc--ccC-ccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 138 IAKVLNLEA--MDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 138 ~~~~~~~~~--~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
....+.... ... .=..|++.+||..|.|++++|+.+.+...
T Consensus 211 l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 211 LRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred HHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 333333221 111 11347999999999999999999988653
No 331
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5.9e-09 Score=78.71 Aligned_cols=129 Identities=19% Similarity=0.248 Sum_probs=77.9
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc----------ccCcceEEEEEEE--cC--eEEEEEEcCCchh--
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI----------SPTLGFNIKTVTY--QK--YTLNIWDVGGQRT-- 72 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~----------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~~-- 72 (185)
...++.-.++++++|+.|.|||||+|+|+....... ..+..+......+ ++ ..++++||||...
T Consensus 14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v 93 (366)
T KOG2655|consen 14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV 93 (366)
T ss_pred HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence 334455679999999999999999999987744211 1122333333322 33 5788999999221
Q ss_pred ------------hHHHHHhhh-------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 73 ------------IRSYWRNYF-------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 73 ------------~~~~~~~~~-------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
.......|+ ...|+++|.+..+. ..+....-.+..-+.. .+++|-|+-|+
T Consensus 94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~g-hgL~p~Di~~Mk~l~~----~vNiIPVI~Ka 168 (366)
T KOG2655|consen 94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTG-HGLKPLDIEFMKKLSK----KVNLIPVIAKA 168 (366)
T ss_pred cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCC-CCCcHhhHHHHHHHhc----cccccceeecc
Confidence 112223333 15689999998664 2233333222333232 58899999999
Q ss_pred CCCCCCCHHHHHHhc
Q 029920 128 DINGALTPTEIAKVL 142 (185)
Q Consensus 128 D~~~~~~~~~~~~~~ 142 (185)
|...+.+....+...
T Consensus 169 D~lT~~El~~~K~~I 183 (366)
T KOG2655|consen 169 DTLTKDELNQFKKRI 183 (366)
T ss_pred ccCCHHHHHHHHHHH
Confidence 987765555544433
No 332
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.06 E-value=6.7e-10 Score=78.14 Aligned_cols=100 Identities=18% Similarity=0.093 Sum_probs=65.0
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-HHHHhc---Cc
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-EIAKVL---NL 144 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-~~~~~~---~~ 144 (185)
...+..++..+++.+|++++|+|+.++. ++.. .+.. ...++|+++|+||+|+....... ...... ..
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~------~l~~--~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~ 92 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGSLIP------RLRL--FGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAA 92 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCccch------hHHH--hcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHH
Confidence 3335778888999999999999998753 2211 1111 12368999999999986443322 222111 00
Q ss_pred ccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
... .....+++.+||+++.|++++++.|.+.+.
T Consensus 93 ~~~-~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 93 AGL-GLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred hhc-CCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 000 001235899999999999999999988764
No 333
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.05 E-value=5.9e-10 Score=77.03 Aligned_cols=57 Identities=16% Similarity=0.306 Sum_probs=43.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 70 (185)
...++++++|.||+|||||+|+|.+......++..+.+...-.+. +..+.++||||.
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence 345899999999999999999999988766677666655432221 246899999993
No 334
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.05 E-value=6.9e-10 Score=75.72 Aligned_cols=57 Identities=18% Similarity=0.286 Sum_probs=44.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~ 70 (185)
....+|+++|.||+|||||+|+|.+......+++.+.+.....+. +..+.++||||.
T Consensus 100 ~~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi 157 (157)
T cd01858 100 KKQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPGV 157 (157)
T ss_pred ccceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence 356889999999999999999999987767777776655543332 245889999993
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.01 E-value=6.6e-09 Score=78.43 Aligned_cols=164 Identities=14% Similarity=0.051 Sum_probs=100.6
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----------------ccCcceEEEEEEE---------------
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----------------SPTLGFNIKTVTY--------------- 57 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----------------~~t~~~~~~~~~~--------------- 57 (185)
.......+.|++.|+.+.|||||+-.|.......- .-+.......+-+
T Consensus 111 ~~~~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 111 TEEAPEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred ccCCCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHH
Confidence 34467789999999999999999988755433110 1122222222211
Q ss_pred --------cCeEEEEEEcCCchhhHHHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 58 --------QKYTLNIWDVGGQRTIRSYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 58 --------~~~~~~~~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
.+.-+.++||.|++.+......- -.+.|..++++.+++.-+ .+...-..+.-. .+.|++++.+|+
T Consensus 191 E~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~--~~tkEHLgi~~a---~~lPviVvvTK~ 265 (527)
T COG5258 191 EKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVT--KMTKEHLGIALA---MELPVIVVVTKI 265 (527)
T ss_pred HHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcc--hhhhHhhhhhhh---hcCCEEEEEEec
Confidence 23568899999999876554333 367899999999987422 222211222222 379999999999
Q ss_pred CCCCCCCHHH----HHHhcCc-------------------ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 128 DINGALTPTE----IAKVLNL-------------------EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 128 D~~~~~~~~~----~~~~~~~-------------------~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
|+.++..... ++..+.. ..-....-.|+|.+|+-+|.|++-|.+. ...+..
T Consensus 266 D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~ 339 (527)
T COG5258 266 DMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPK 339 (527)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCc
Confidence 9977643322 2222210 0011123579999999999999765554 444433
No 336
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=1.3e-09 Score=83.21 Aligned_cols=90 Identities=17% Similarity=0.098 Sum_probs=62.7
Q ss_pred HHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEE
Q 029920 77 WRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKI 155 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
....+.++|.+++|+|+.++. +...+..++... ...++|+++|+||+|+.+......+...+.. .+.++
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a----~~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~------~g~~v 152 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKA----ESTGLEIVLCLNKADLVSPTEQQQWQDRLQQ------WGYQP 152 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHH----HHCCCCEEEEEEchhcCChHHHHHHHHHHHh------cCCeE
Confidence 344578999999999999865 343445555443 2247999999999999754222233322211 34578
Q ss_pred EeecccCCCCHHHHHHHHHHH
Q 029920 156 VGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
+.+||+++.|++++++.+...
T Consensus 153 ~~iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 153 LFISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEEEcCCCCCHHHHhhhhccc
Confidence 999999999999999887653
No 337
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.94 E-value=1.7e-09 Score=78.28 Aligned_cols=159 Identities=15% Similarity=0.045 Sum_probs=97.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc-CcceEEEEEE-EcCeEEEEEEcCC----------chhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP-TLGFNIKTVT-YQKYTLNIWDVGG----------QRTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~-t~~~~~~~~~-~~~~~~~~~D~~g----------~~~~~~~~~~ 79 (185)
+..+++++++|..|+|||+|+|.+...+.. ..+. +.+.++..-- .-+..+.++|.|| ..++....+.
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 466799999999999999999999887764 2332 4444333211 1245899999999 3345556666
Q ss_pred hhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH------HHHHHhc-CcccccC
Q 029920 80 YFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP------TEIAKVL-NLEAMDK 149 (185)
Q Consensus 80 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~------~~~~~~~-~~~~~~~ 149 (185)
|+.+ ---+++.+|++-+ ++.......+++.+ .+.|+.+|+||||....... ..+...+ +.....+
T Consensus 213 Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge---~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f 287 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGE---NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVF 287 (320)
T ss_pred HHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhh---cCCCeEEeeehhhhhhhccccccCccccceeehhhccccce
Confidence 6643 3455667777653 22222222333333 38999999999997543221 1111111 1111112
Q ss_pred ccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 150 TRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
....|-+.+|+.++.|++++.-.+.+.
T Consensus 288 ~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 288 LVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred eccCCceeeecccccCceeeeeehhhh
Confidence 234455679999999999988766554
No 338
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.5e-08 Score=70.95 Aligned_cols=148 Identities=14% Similarity=0.182 Sum_probs=84.1
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-------c---CcceE--EEEEEEcC--eEEEEEEcCCchh---
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-------P---TLGFN--IKTVTYQK--YTLNIWDVGGQRT--- 72 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-------~---t~~~~--~~~~~~~~--~~~~~~D~~g~~~--- 72 (185)
..+..-.|+|+|+|.+|.|||||+|++...+....+ + |.... ...++.++ .++.++||||...
T Consensus 40 ~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqIn 119 (336)
T KOG1547|consen 40 TMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQIN 119 (336)
T ss_pred HHhccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccC
Confidence 334566899999999999999999999765553211 1 22211 12233344 4788999999221
Q ss_pred -----------------------hHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 73 -----------------------IRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 73 -----------------------~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
....++..+. ..|+++|.+..+. .++..+.-.+..-+.. -..++-|+-|+
T Consensus 120 N~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~----vvNvvPVIaka 194 (336)
T KOG1547|consen 120 NDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE----VVNVVPVIAKA 194 (336)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh----hheeeeeEeec
Confidence 1111222222 3588899888774 2333332222222222 36788899999
Q ss_pred CCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 128 DINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 128 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
|...-++..+..+....+... +++.+++-.+.+-.
T Consensus 195 DtlTleEr~~FkqrI~~el~~--~~i~vYPq~~fded 229 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEK--HGIDVYPQDSFDED 229 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHh--cCcccccccccccc
Confidence 976655555555554432221 55555555444433
No 339
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.93 E-value=1.6e-09 Score=84.78 Aligned_cols=162 Identities=20% Similarity=0.245 Sum_probs=109.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
+.-..+|+.|+|..++|||+|++++....+ ...++.-+-..+.+.. ....+.+.|-+|... ..|....|++|
T Consensus 26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavI 100 (749)
T KOG0705|consen 26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVV 100 (749)
T ss_pred cccchhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCch-----hhhhhhccceE
Confidence 355678999999999999999999766655 4555555543433333 446777888887432 23456789999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|+.+.+..+|+....+....-.+.....+|.++++++.-.... ..+.+.+.-..........+.++++++.+|.|++.
T Consensus 101 fvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~-~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 101 FVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAK-RPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcc-cccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 99999999999987776666655555556788888886533211 11111111111122222445689999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+|+.+...+..
T Consensus 180 vf~~~~~k~i~ 190 (749)
T KOG0705|consen 180 VFQEVAQKIVQ 190 (749)
T ss_pred HHHHHHHHHHH
Confidence 99998887654
No 340
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.93 E-value=4.3e-09 Score=78.63 Aligned_cols=88 Identities=22% Similarity=0.097 Sum_probs=63.0
Q ss_pred HhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920 78 RNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 78 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+..+.++|.+++|+|+.++. ++..+..|+..+.. .++|+++|+||+|+.+........... .. .+.+++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~~~~~~~~~-----~~-~g~~v~ 142 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEEEELELVEA-----LA-LGYPVL 142 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHHHHHHHHHH-----Hh-CCCeEE
Confidence 34578999999999999887 77777766655433 368999999999996542111111111 11 456899
Q ss_pred eecccCCCCHHHHHHHHHH
Q 029920 157 GCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~ 175 (185)
.+||+++.|+++++..+..
T Consensus 143 ~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 143 AVSAKTGEGLDELREYLKG 161 (287)
T ss_pred EEECCCCccHHHHHhhhcc
Confidence 9999999999999887754
No 341
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.7e-08 Score=75.92 Aligned_cols=121 Identities=20% Similarity=0.232 Sum_probs=81.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCccc----ccCcceEEEEEEE-------------c--------------------
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVI----SPTLGFNIKTVTY-------------Q-------------------- 58 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~----~~t~~~~~~~~~~-------------~-------------------- 58 (185)
.+=|+++|.-..||||+|+.|..+.++.. .||.......+.. +
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 45689999999999999999999888522 2333322222100 0
Q ss_pred -----C---eEEEEEEcCCc-----------hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe
Q 029920 59 -----K---YTLNIWDVGGQ-----------RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS 119 (185)
Q Consensus 59 -----~---~~~~~~D~~g~-----------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~ 119 (185)
+ .++.++||||. -.|....+.+.+.+|.++++||...-+--++... ++.......-.
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~----vi~aLkG~Edk 213 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKR----VIDALKGHEDK 213 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHH----HHHHhhCCcce
Confidence 0 36889999993 2345566777899999999999876433333333 33333334567
Q ss_pred EEEEeecCCCCCCCCHHHHHH
Q 029920 120 LLILANKQDINGALTPTEIAK 140 (185)
Q Consensus 120 ~ivv~nK~D~~~~~~~~~~~~ 140 (185)
+-||+||.|..+.++..++.-
T Consensus 214 iRVVLNKADqVdtqqLmRVyG 234 (532)
T KOG1954|consen 214 IRVVLNKADQVDTQQLMRVYG 234 (532)
T ss_pred eEEEeccccccCHHHHHHHHH
Confidence 889999999988766555443
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.90 E-value=8.4e-09 Score=70.35 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=58.7
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
.++.+|++++|+|+.++..-. ...+...+.. ...++|+++|+||+|+.+......+...+... .....+.+|
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~--~~~i~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~-----~~~~~~~iS 76 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTR--CKHVEEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKE-----YPTIAFHAS 76 (157)
T ss_pred hhhhCCEEEEEEECCCCcccc--CHHHHHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcC-----CcEEEEEee
Confidence 467899999999999863211 1223333332 12358999999999996543222333333221 222358899
Q ss_pred ccCCCCHHHHHHHHHHHH
Q 029920 160 AYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~ 177 (185)
|+++.|++++.+.+.+..
T Consensus 77 a~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 77 INNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 999999999999997764
No 343
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.88 E-value=6.3e-09 Score=69.71 Aligned_cols=52 Identities=27% Similarity=0.406 Sum_probs=38.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE--EEEEcCeEEEEEEcCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK--TVTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~ 70 (185)
+++++|.+|+|||||+|++.+......+...+.+.. .+..++ .+.++||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFLTP-TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEeCC-CEEEEECCCc
Confidence 899999999999999999998877554444443322 233433 6799999996
No 344
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.9e-09 Score=80.60 Aligned_cols=158 Identities=16% Similarity=0.133 Sum_probs=105.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC----------------------------------CCCcccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING----------------------------------EDTSVISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~----------------------------------~~~~~~~~t~~~~~~~~~~~ 58 (185)
+...+++.++|+-.+||||+...+.. ........|.+.....++..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 46789999999999999999766521 11122235666777788888
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc---ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL---RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP 135 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 135 (185)
...|.+.|.||+..+......-..++|.-++|+.+... ..|+.--+.-...+......-...|+++||.|-+..+..
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 89999999999999988888788899999999988542 223322111111111112224678999999997654333
Q ss_pred HH----HHH----hcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 136 TE----IAK----VLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 136 ~~----~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
.+ ..+ .+.........+..++++|..+|.++.+..
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 22 222 222222333467789999999999998754
No 345
>PRK00098 GTPase RsgA; Reviewed
Probab=98.87 E-value=6e-09 Score=78.25 Aligned_cols=85 Identities=24% Similarity=0.203 Sum_probs=58.1
Q ss_pred hhcCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEe
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
.+.++|.+++|+|+.++...... ..++... .. .++|+++|+||+|+.+.. ...++...+. . .+.++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~-~~---~~ip~iIVlNK~DL~~~~~~~~~~~~~~~-----~-~g~~v~~ 146 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLA-EA---NGIKPIIVLNKIDLLDDLEEARELLALYR-----A-IGYDVLE 146 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHH-HH---CCCCEEEEEEhHHcCCCHHHHHHHHHHHH-----H-CCCeEEE
Confidence 35899999999999887655544 3444333 22 378999999999996321 1111222111 1 3468999
Q ss_pred ecccCCCCHHHHHHHHH
Q 029920 158 CSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~ 174 (185)
+||+++.|++++++.+.
T Consensus 147 vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 147 LSAKEGEGLDELKPLLA 163 (298)
T ss_pred EeCCCCccHHHHHhhcc
Confidence 99999999999998764
No 346
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.87 E-value=8e-09 Score=77.23 Aligned_cols=58 Identities=19% Similarity=0.362 Sum_probs=44.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR 71 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~ 71 (185)
...++++++|.||+|||||+|+|.+......++..+.+.....+. +..+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence 456899999999999999999999987766666666555432221 3468899999953
No 347
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.86 E-value=7.6e-09 Score=70.44 Aligned_cols=83 Identities=19% Similarity=0.178 Sum_probs=54.2
Q ss_pred CEEEEEEeCCCcccHHHHHHHHH-HHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELD-NLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
|++++|+|+.++.+... .++. ..+. ..++|+++|+||+|+.+.....++...+... ...+++.+||+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~-----~~~~ii~vSa~~~ 70 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIK---EKGKKLILVLNKADLVPKEVLRKWLAYLRHS-----YPTIPFKISATNG 70 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHh---cCCCCEEEEEechhcCCHHHHHHHHHHHHhh-----CCceEEEEeccCC
Confidence 78999999988754432 1222 2222 2368999999999996532222222112111 2346899999999
Q ss_pred CCHHHHHHHHHHHH
Q 029920 164 EGLLEGFDWLVQDI 177 (185)
Q Consensus 164 ~~i~~l~~~l~~~~ 177 (185)
.|++++.+.+.+..
T Consensus 71 ~gi~~L~~~i~~~~ 84 (155)
T cd01849 71 QGIEKKESAFTKQT 84 (155)
T ss_pred cChhhHHHHHHHHh
Confidence 99999999887643
No 348
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.86 E-value=1.1e-07 Score=68.65 Aligned_cols=84 Identities=15% Similarity=0.159 Sum_probs=56.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC--CCccc----ccCcceEEEEEEE---cCeEEEEEEcCCchhh------HHHHH
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE--DTSVI----SPTLGFNIKTVTY---QKYTLNIWDVGGQRTI------RSYWR 78 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~--~~~~~----~~t~~~~~~~~~~---~~~~~~~~D~~g~~~~------~~~~~ 78 (185)
.+-.-|+|+|++++|||||+|.|.+. .+... ..|.++-...... .+..+.++||+|.... .....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34556999999999999999999998 55422 3344444443333 3578999999995432 22233
Q ss_pred hhhcC--CCEEEEEEeCCCcc
Q 029920 79 NYFEQ--TDGLVWVVDSSDLR 97 (185)
Q Consensus 79 ~~~~~--~d~~i~v~d~~~~~ 97 (185)
..+.. ++++||..+.....
T Consensus 85 ~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 85 FALATLLSSVLIYNSWETILG 105 (224)
T ss_pred HHHHHHHhCEEEEeccCcccH
Confidence 33444 89999988877543
No 349
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.85 E-value=8.5e-09 Score=78.12 Aligned_cols=58 Identities=21% Similarity=0.302 Sum_probs=47.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR 71 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~ 71 (185)
...++++|+|-||+|||||||+|.++.....++.+|++...-.+. +..+.++||||.-
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 456889999999999999999999999988888888776654332 2358999999943
No 350
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.84 E-value=7.6e-08 Score=71.64 Aligned_cols=86 Identities=20% Similarity=0.306 Sum_probs=61.1
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-----------------CeEEEEEEcCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-----------------KYTLNIWDVGG 69 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g 69 (185)
+.+..+.+++.++|.||+||||+.|+|+..... ....|+......+... .-.++++|.+|
T Consensus 14 ~gR~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAG 93 (391)
T KOG1491|consen 14 LGRDGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAG 93 (391)
T ss_pred ccCCCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecc
Confidence 344667899999999999999999999876653 1223444443333221 14789999998
Q ss_pred -------chhhHHHHHhhhcCCCEEEEEEeCCC
Q 029920 70 -------QRTIRSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 70 -------~~~~~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
.+.........++.+|+++-|+++..
T Consensus 94 LvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 94 LVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 33445566677889999999998764
No 351
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.83 E-value=1.4e-08 Score=75.53 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=66.4
Q ss_pred cCCchh-hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920 67 VGGQRT-IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE 145 (185)
Q Consensus 67 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~ 145 (185)
.||+.. ........++.+|++++|+|+.++.+... ..+...+ .+.|+++|+||+|+.+......+...+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~~~~~~~~~~- 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVTKQWLKYFEE- 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHHHHHHHHHHH-
Confidence 366533 33456677899999999999987644322 1222322 25899999999999643222222222211
Q ss_pred cccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.+.+++.+||+++.|++++.+.+.+.+.+
T Consensus 76 -----~~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 -----KGIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred -----cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 22468999999999999999998887654
No 352
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=4.2e-08 Score=77.61 Aligned_cols=143 Identities=15% Similarity=0.098 Sum_probs=84.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
..+++-++|+||||+||||||.+|........-..+.-....+......+.+..+|.. . .......+-+|.+++.+|
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~D--l-~~miDvaKIaDLVlLlId 142 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSD--L-HQMIDVAKIADLVLLLID 142 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHH--H-HHHHhHHHhhheeEEEec
Confidence 4557888999999999999999987654422111111111123334467888888832 2 233445667899999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccC-ccceEEEeecccC
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDK-TRHWKIVGCSAYT 162 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~ 162 (185)
.+-. |+-..-.+..++.... -..++-|++..|+....+ .+.....+..-.+.. ..+..+|..|...
T Consensus 143 gnfG--fEMETmEFLnil~~HG--mPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 143 GNFG--FEMETMEFLNILISHG--MPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred cccC--ceehHHHHHHHHhhcC--CCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 9863 3322223344444322 245788999999865433 333444333222221 1456777777654
No 353
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.82 E-value=1.1e-08 Score=70.71 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=62.6
Q ss_pred cCCch-hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920 67 VGGQR-TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE 145 (185)
Q Consensus 67 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~ 145 (185)
.||+. +........++++|++++|+|+.++..... ..+...+ .+.|+++|+||+|+.+........+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~--~~i~~~~-----~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~- 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN--PLLEKIL-----GNKPRIIVLNKADLADPKKTKKWLKYFES- 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC--hhhHhHh-----cCCCEEEEEehhhcCChHHHHHHHHHHHh-
Confidence 35543 233455667889999999999987643221 1112211 25789999999998643221122111111
Q ss_pred cccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
....++.+||+++.|++++.+.+...+
T Consensus 74 -----~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 -----KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred -----cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 123579999999999999999988865
No 354
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.82 E-value=2.6e-08 Score=67.78 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=43.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEE-EcCeEEEEEEcCCc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVT-YQKYTLNIWDVGGQ 70 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~-~~~~~~~~~D~~g~ 70 (185)
.....+++++|.+|+||||++|++.+......+++.+++...-. ..+..+.+|||||.
T Consensus 98 ~~~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi 156 (156)
T cd01859 98 DGKEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPGV 156 (156)
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence 34568899999999999999999998776666777776543221 12347899999993
No 355
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.82 E-value=1.1e-08 Score=75.99 Aligned_cols=56 Identities=21% Similarity=0.463 Sum_probs=42.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 70 (185)
...++++++|.||+|||||+|+|.+......+...+.+... +..+ ..+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~-~~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWIKLS-DGLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEEEeC-CCEEEEECCCc
Confidence 34689999999999999999999988765555555544333 2332 36799999996
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.81 E-value=1.5e-08 Score=70.08 Aligned_cols=56 Identities=20% Similarity=0.423 Sum_probs=41.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 70 (185)
...++++++|.+|+|||||+|++.+.......+..+.+... +..+ ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~-~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS-PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec-CCEEEEECCCC
Confidence 45579999999999999999999998775444444433332 2232 46889999995
No 357
>PRK12288 GTPase RsgA; Reviewed
Probab=98.80 E-value=3.7e-08 Score=75.25 Aligned_cols=89 Identities=22% Similarity=0.133 Sum_probs=63.4
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
..++|.+++|++.....++..+..|+.... ..++|+++|+||+|+.+............. +.. .+.+++.+||
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~--y~~-~g~~v~~vSA 190 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDI--YRN-IGYRVLMVSS 190 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHH--HHh-CCCeEEEEeC
Confidence 467899999999987778888877766442 236899999999999754322222211111 111 3568999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLVQD 176 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (185)
+++.|++++++.+...
T Consensus 191 ~tg~GideL~~~L~~k 206 (347)
T PRK12288 191 HTGEGLEELEAALTGR 206 (347)
T ss_pred CCCcCHHHHHHHHhhC
Confidence 9999999999988653
No 358
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.7e-08 Score=80.69 Aligned_cols=113 Identities=21% Similarity=0.274 Sum_probs=80.4
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCC---------------cccccCcceEEEE--EEE--cCeEEEEEEcCCch
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDT---------------SVISPTLGFNIKT--VTY--QKYTLNIWDVGGQR 71 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~---------------~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~ 71 (185)
...++..+++++.+..-|||||+..|....- ..-..+.+++.+. +.. .++.++++|+||+-
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghv 83 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHV 83 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCcc
Confidence 3466778899999999999999999854322 1112344444443 222 67899999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 128 (185)
.|.........-+|+.++.+|+...---+. ..++++....+...++|+||+|
T Consensus 84 df~sevssas~l~d~alvlvdvvegv~~qt-----~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467|consen 84 DFSSEVSSASRLSDGALVLVDVVEGVCSQT-----YAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred chhhhhhhhhhhcCCcEEEEeeccccchhH-----HHHHHHHHHccCceEEEEehhh
Confidence 999999999999999999999976322111 2222222233677899999999
No 359
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.78 E-value=3.5e-07 Score=72.26 Aligned_cols=100 Identities=14% Similarity=0.287 Sum_probs=67.2
Q ss_pred eEEEEEEcCC-------------chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeec
Q 029920 60 YTLNIWDVGG-------------QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANK 126 (185)
Q Consensus 60 ~~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK 126 (185)
....++|.|| -+....+...|..+..++|+|+--- |.+..+....++.......+...|+|++|
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTK 488 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTK 488 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEee
Confidence 4678899999 2335567888999999999998432 34555555566666666668899999999
Q ss_pred CCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 127 QDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 127 ~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
.|+.+. .++..+...+.-..+.- ....+|.+-.-.|
T Consensus 489 VDlAEknlA~PdRI~kIleGKLFPM-KALGYfaVVTGrG 526 (980)
T KOG0447|consen 489 VDLAEKNVASPSRIQQIIEGKLFPM-KALGYFAVVTGKG 526 (980)
T ss_pred cchhhhccCCHHHHHHHHhcCccch-hhcceeEEEecCC
Confidence 999765 45667777665443322 3334454433333
No 360
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.77 E-value=1.8e-08 Score=77.63 Aligned_cols=97 Identities=22% Similarity=0.263 Sum_probs=64.4
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM 147 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~ 147 (185)
.+.+..+...+.+.++++++|+|+.+.. ++. ..+.... .+.|+++|+||+|+.... ..+++...+.. ..
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~---~~l~~~~-----~~~piilV~NK~DLl~k~~~~~~~~~~l~~-~~ 120 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLI---PELKRFV-----GGNPVLLVGNKIDLLPKSVNLSKIKEWMKK-RA 120 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCcc---HHHHHHh-----CCCCEEEEEEchhhCCCCCCHHHHHHHHHH-HH
Confidence 5677888888888999999999998743 222 2222222 267999999999986432 23333222110 01
Q ss_pred cCccce---EEEeecccCCCCHHHHHHHHHHH
Q 029920 148 DKTRHW---KIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 148 ~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
.. .++ .++.+||+++.|++++++.+.+.
T Consensus 121 k~-~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 121 KE-LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HH-cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 11 222 48899999999999999998765
No 361
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.75 E-value=3.6e-08 Score=75.97 Aligned_cols=116 Identities=12% Similarity=0.173 Sum_probs=64.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhh--------
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYF-------- 81 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~-------- 81 (185)
..++.++|.+|+|||||+|+|.+... ...++..+++.....+. +..+.++||||....... ..++
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~-~~~l~~~~l~~~ 232 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQM-AHYLDKKDLKYI 232 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHh-hhhcCHHHHhhc
Confidence 46899999999999999999987543 23445555555544333 134679999996543221 1111
Q ss_pred ---cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH
Q 029920 82 ---EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTE 137 (185)
Q Consensus 82 ---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~ 137 (185)
+......++++....-.+..+. .+......+..+.+.+++.+.......+.
T Consensus 233 ~~~~~i~~~~~~l~~~q~~~~ggl~-----~~d~~~~~~~~~~~~~~~~~~~h~t~~~~ 286 (360)
T TIGR03597 233 TPKKEIKPKTYQLNPNQTLFLGGLA-----RFDYLKGEKTSFTFYVSNELNIHRTKLEN 286 (360)
T ss_pred CCCCccCceEEEeCCCCEEEEceEE-----EEEEecCCceEEEEEccCCceeEeechhh
Confidence 2345556666544322111100 01111223566777888777554433333
No 362
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=1.8e-08 Score=70.88 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=38.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCC--------cccccCcceEEEEEEEcC-eEEEEEEcCCc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDT--------SVISPTLGFNIKTVTYQK-YTLNIWDVGGQ 70 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~--------~~~~~t~~~~~~~~~~~~-~~~~~~D~~g~ 70 (185)
...+++++|.+|+|||||+|+|.+... ...+...+++.....+.- ..+.++||||.
T Consensus 126 ~~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~ 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI 190 (190)
T ss_pred cCCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence 346899999999999999999987543 123344445544433321 26799999993
No 363
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.74 E-value=3e-08 Score=67.50 Aligned_cols=56 Identities=16% Similarity=0.296 Sum_probs=38.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE--EEEEcCeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK--TVTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~D~~g~ 70 (185)
....+++++|.+|+||||++|+|.+......+...+.+.. .+..+ ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD-NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec-CCEEEEECCCC
Confidence 4568899999999999999999998765333322222222 12222 46899999993
No 364
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.73 E-value=1e-07 Score=72.90 Aligned_cols=79 Identities=20% Similarity=0.165 Sum_probs=56.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC-cc---cccCcceEEEEEEEcC-----------------eEEEEEEcCCchh---
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT-SV---ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRT--- 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~-~~---~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~--- 72 (185)
++++++|.||+|||||.++|++... .. ...|.......+.+.+ ..+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999998766 32 2223443333333322 4688999999432
Q ss_pred ----hHHHHHhhhcCCCEEEEEEeCCC
Q 029920 73 ----IRSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 73 ----~~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
........++.+|+++.|+++.+
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 34455667889999999999853
No 365
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.70 E-value=4.4e-08 Score=73.28 Aligned_cols=101 Identities=14% Similarity=0.152 Sum_probs=66.7
Q ss_pred EcCCchhh-HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc
Q 029920 66 DVGGQRTI-RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL 144 (185)
Q Consensus 66 D~~g~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~ 144 (185)
-.||+... .......++.+|++++|+|+.++.+... ..+...+. +.|+++|+||+|+.+......+...+..
T Consensus 6 wfpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~~-----~kp~iiVlNK~DL~~~~~~~~~~~~~~~ 78 (287)
T PRK09563 6 WFPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKIIG-----NKPRLLILNKSDLADPEVTKKWIEYFEE 78 (287)
T ss_pred CcHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHhC-----CCCEEEEEEchhcCCHHHHHHHHHHHHH
Confidence 35776432 3455667889999999999987644322 22233322 5899999999998643222222222211
Q ss_pred ccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 145 EAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.+.+++.+||+++.|++++.+.+.+.+.+
T Consensus 79 ------~~~~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 79 ------QGIKALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred ------cCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 23468999999999999999988877654
No 366
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.70 E-value=2.8e-08 Score=66.54 Aligned_cols=79 Identities=20% Similarity=0.184 Sum_probs=49.5
Q ss_pred HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEe
Q 029920 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
...++.+|++++|+|+.++.+... ..+..++.... .++|+++|+||+|+.++....++...+.. .+.+++.
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~--~~l~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~------~~~~ii~ 76 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRP--PDLERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKK------EGIVVVF 76 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCC--HHHHHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHh------cCCeEEE
Confidence 455789999999999988754331 12233333211 46899999999998654322223332221 2356889
Q ss_pred ecccCCCC
Q 029920 158 CSAYTGEG 165 (185)
Q Consensus 158 ~Sa~~~~~ 165 (185)
+||+++.+
T Consensus 77 iSa~~~~~ 84 (141)
T cd01857 77 FSALKENA 84 (141)
T ss_pred EEecCCCc
Confidence 99988753
No 367
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=7.9e-08 Score=72.58 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=91.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-----------------cccc-------CcceEEE--EEEE------------
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-----------------VISP-------TLGFNIK--TVTY------------ 57 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-----------------~~~~-------t~~~~~~--~~~~------------ 57 (185)
.++++|+|...+|||||+--|...... .... +.++... .+.+
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~ 246 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEK 246 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhh
Confidence 469999999999999998777543221 0011 1111111 0111
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhc--CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFE--QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP 135 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~ 135 (185)
...-+.++|.+|+.++.......+. ..|...+|+.+...-.+. ..+.+- +... -++|+.++.+|+|+.+....
T Consensus 247 SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLg-l~~A---L~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 247 SSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLG-LIAA---LNIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHH-HHHH---hCCCeEEEEEeeccccchhH
Confidence 2356889999999887665544443 358888899887643322 122222 2222 27999999999999877544
Q ss_pred HHHHHhc----Cc--------------------ccccCccceEEEeecccCCCCHHHHHH
Q 029920 136 TEIAKVL----NL--------------------EAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 136 ~~~~~~~----~~--------------------~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
+.....+ .. +.+...+..|+|.+|+.+|++++-+-.
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 3322211 11 112223667999999999999875443
No 368
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=3.8e-07 Score=68.09 Aligned_cols=146 Identities=20% Similarity=0.183 Sum_probs=90.6
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhC----CCC------c-----ccccCcc--eEEEEEEE--cCeEEEEEEcCCch
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKING----EDT------S-----VISPTLG--FNIKTVTY--QKYTLNIWDVGGQR 71 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~----~~~------~-----~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~ 71 (185)
.+.+...+|.-+|+..-|||||-.++.. ... . ....-.+ +....+++ ....+.=.|+||+.
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHA 128 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHA 128 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchH
Confidence 3466778999999999999999766532 111 0 1111222 33333444 34667788999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH-----HHHHhcCccc
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT-----EIAKVLNLEA 146 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~-----~~~~~~~~~~ 146 (185)
.+-....-...+.|+.|+|+.++|... ...++.+.-..+- .-..++|.+||.|+.++.+.. ++.+.+....
T Consensus 129 DYIKNMItGaaqMDGaILVVaatDG~M-PQTrEHlLLArQV---GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 129 DYIKNMITGAAQMDGAILVVAATDGPM-PQTREHLLLARQV---GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHhhcCccccCceEEEEEcCCCCC-cchHHHHHHHHHc---CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 988777777788999999999999543 2333322222111 125688889999998553332 3334444333
Q ss_pred ccCccceEEEeeccc
Q 029920 147 MDKTRHWKIVGCSAY 161 (185)
Q Consensus 147 ~~~~~~~~~~~~Sa~ 161 (185)
+.. ...|++.=||.
T Consensus 205 f~G-d~~PvI~GSAL 218 (449)
T KOG0460|consen 205 FDG-DNTPVIRGSAL 218 (449)
T ss_pred CCC-CCCCeeecchh
Confidence 433 56677775544
No 369
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=1e-06 Score=71.10 Aligned_cols=115 Identities=19% Similarity=0.291 Sum_probs=69.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcce----------------------------------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGF---------------------------------------- 50 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~---------------------------------------- 50 (185)
.+...||++.|..++||||++|++...+.- ...+++..
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~ 185 (749)
T KOG0448|consen 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKD 185 (749)
T ss_pred hhcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccc
Confidence 566789999999999999999998654431 11111110
Q ss_pred ----EEEEEEEc-C------eEEEEEEcCCc---hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccC
Q 029920 51 ----NIKTVTYQ-K------YTLNIWDVGGQ---RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS 116 (185)
Q Consensus 51 ----~~~~~~~~-~------~~~~~~D~~g~---~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 116 (185)
..-.+-+. + -.+.++|.||. .....-...+...+|++|||.++-+.-+.. ..+.+... ...
T Consensus 186 ~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~s-ek~Ff~~v----s~~ 260 (749)
T KOG0448|consen 186 LGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLS-EKQFFHKV----SEE 260 (749)
T ss_pred cCcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHH-HHHHHHHh----hcc
Confidence 00001111 1 25788899994 344455556678899999999887643222 22222222 222
Q ss_pred CCeEEEEeecCCCCCC
Q 029920 117 GASLLILANKQDINGA 132 (185)
Q Consensus 117 ~~~~ivv~nK~D~~~~ 132 (185)
+..+.++-||+|....
T Consensus 261 KpniFIlnnkwDasas 276 (749)
T KOG0448|consen 261 KPNIFILNNKWDASAS 276 (749)
T ss_pred CCcEEEEechhhhhcc
Confidence 5567777799997654
No 370
>PRK14974 cell division protein FtsY; Provisional
Probab=98.57 E-value=1.5e-07 Score=71.51 Aligned_cols=97 Identities=10% Similarity=0.059 Sum_probs=54.2
Q ss_pred CeEEEEEEcCCchhhHH----HHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRS----YWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+.++||+|...... ..... ....|.+++|+|+..... .......+... -..--+++||.|....
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d---~~~~a~~f~~~----~~~~giIlTKlD~~~~ 294 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGND---AVEQAREFNEA----VGIDGVILTKVDADAK 294 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchh---HHHHHHHHHhc----CCCCEEEEeeecCCCC
Confidence 45799999999543211 11111 235789999999976432 22222222221 1236688999998654
Q ss_pred CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
... -+..... .+.|+..++ +|++++++..+
T Consensus 295 ~G~-~ls~~~~-------~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 295 GGA-ALSIAYV-------IGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred ccH-HHHHHHH-------HCcCEEEEe--CCCChhhcccC
Confidence 332 2221111 345666665 78888887543
No 371
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.56 E-value=6.3e-06 Score=55.45 Aligned_cols=24 Identities=46% Similarity=0.699 Sum_probs=21.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~ 37 (185)
+..++|.+-|+||+||||++.++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~ 26 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIA 26 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHH
Confidence 456899999999999999988875
No 372
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.55 E-value=9.5e-07 Score=66.88 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=75.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCC------Cc----cc------------ccCcceEEEEE-----------------
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGED------TS----VI------------SPTLGFNIKTV----------------- 55 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~------~~----~~------------~~t~~~~~~~~----------------- 55 (185)
+.-.++++|++|+||||++..|.+.. .. .. ....+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 34578999999999999988874311 10 00 00011111100
Q ss_pred EEcCeEEEEEEcCCchhhHH----HHHhh--------hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 56 TYQKYTLNIWDVGGQRTIRS----YWRNY--------FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 56 ~~~~~~~~~~D~~g~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
..+++.+.++||||...... ..... -..++..++|+|++.. .+...+ ...+... -.+.-+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g--~~~~~~-a~~f~~~----~~~~giI 265 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG--QNALSQ-AKAFHEA----VGLTGII 265 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC--hHHHHH-HHHHHhh----CCCCEEE
Confidence 11346899999999532111 11111 1246889999999853 222222 2333221 1345789
Q ss_pred eecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 124 ANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
+||.|...... .+...... .+.|+..++ +|++++++..
T Consensus 266 lTKlD~t~~~G--~~l~~~~~------~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAKGG--VVFAIADE------LGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCCcc--HHHHHHHH------HCCCEEEEe--CCCChhhCcc
Confidence 99999654322 22221111 355777776 7788877643
No 373
>PRK12288 GTPase RsgA; Reviewed
Probab=98.55 E-value=2.6e-07 Score=70.68 Aligned_cols=56 Identities=16% Similarity=0.265 Sum_probs=35.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCc---c------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTL---G------FNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~---~------~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
.++++|.+|+|||||+|+|.+.......... + .....+...+ ...++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~-~~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPH-GGDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecC-CCEEEECCCCCccc
Confidence 3789999999999999999987553222111 1 1122223321 22599999976654
No 374
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.54 E-value=1.4e-06 Score=76.44 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=65.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccc-----cC--cceEEEEEEE-cCeEEEEEEcCCc----h----hhHHHHHhh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVIS-----PT--LGFNIKTVTY-QKYTLNIWDVGGQ----R----TIRSYWRNY 80 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t--~~~~~~~~~~-~~~~~~~~D~~g~----~----~~~~~~~~~ 80 (185)
+=.+|+|++|+||||++..- |..++... .+ .+-+. .+++ -.-+-.++||+|. + .....|..+
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~f 189 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGF 189 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecCCEEEEcCCCccccCCCcccccHHHHHHH
Confidence 44789999999999999876 44443211 11 11111 1111 1235679999992 1 223344444
Q ss_pred h---------cCCCEEEEEEeCCCc-----ccHH----HHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 81 F---------EQTDGLVWVVDSSDL-----RRLD----DCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 81 ~---------~~~d~~i~v~d~~~~-----~s~~----~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
+ +-.+++|+++|+.+- +... .++..+.++... -....|+.|++||+|+..
T Consensus 190 L~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 190 LGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhhc
Confidence 3 347999999997752 1111 223333333333 234699999999999875
No 375
>PRK13796 GTPase YqeH; Provisional
Probab=98.54 E-value=2.2e-07 Score=71.73 Aligned_cols=65 Identities=23% Similarity=0.296 Sum_probs=42.0
Q ss_pred HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEEEEEc-CeEEEEEEcCCch
Q 029920 7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKTVTYQ-KYTLNIWDVGGQR 71 (185)
Q Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~ 71 (185)
+....+.....++.++|.+|+|||||+|+|.+... ...++..+++.....+. +....++||||..
T Consensus 151 ~~~I~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 151 LEAIEKYREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred HHHHHHhcCCCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence 33333333446899999999999999999986432 22445555555544331 1235799999964
No 376
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.1e-07 Score=68.56 Aligned_cols=163 Identities=16% Similarity=0.162 Sum_probs=97.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcce-------E--------------EEEE----------EE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGF-------N--------------IKTV----------TY 57 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~-------~--------------~~~~----------~~ 57 (185)
+...++|.-+|+.--||||++.++.|-+.- +....+.. . ++.+ +.
T Consensus 35 RQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~ 114 (466)
T KOG0466|consen 35 RQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDR 114 (466)
T ss_pred heeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCccc
Confidence 456799999999999999999998664331 00000000 0 0000 00
Q ss_pred c----C----eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 58 Q----K----YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 58 ~----~----~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
. . ..+.++|.||++-.-+.......-.|+.++.+.++.+-.-....+.+..+--. . =+.++++-||+|+
T Consensus 115 ~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM-~--LkhiiilQNKiDl 191 (466)
T KOG0466|consen 115 PGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIM-K--LKHIIILQNKIDL 191 (466)
T ss_pred CCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHh-h--hceEEEEechhhh
Confidence 0 0 35678999999765555444445568889988887632222222222222111 1 1568999999999
Q ss_pred CCCCCHHHHHHhcC-cccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 130 NGALTPTEIAKVLN-LEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 130 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.......+..+... ...-..-.+.|++++||.-++|++.+.+.|++.+.
T Consensus 192 i~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIP 241 (466)
T KOG0466|consen 192 IKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIP 241 (466)
T ss_pred hhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCC
Confidence 76543332222111 00001114679999999999999999999998874
No 377
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.51 E-value=1e-07 Score=75.74 Aligned_cols=121 Identities=19% Similarity=0.165 Sum_probs=83.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcc---------------------cccCcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSV---------------------ISPTLGFNIKTVTYQKYTLNIWDVGGQRTI 73 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~---------------------~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~ 73 (185)
+..+|.+..+-.+||||+-+++.-..-.. ..-|+...-..+.+.++.++++||||+-.|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 44579999999999999988864322110 001222222345677899999999999999
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHH
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAK 140 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~ 140 (185)
....+..++-.|+.++++|+...-.-+. ...+++..+ .++|.+..+||.|.........+..
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt-~tV~rQ~~r----y~vP~i~FiNKmDRmGa~~~~~l~~ 179 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQT-ETVWRQMKR----YNVPRICFINKMDRMGASPFRTLNQ 179 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhh-HHHHHHHHh----cCCCeEEEEehhhhcCCChHHHHHH
Confidence 9888999999999999999886432222 222333333 3899999999999876655544443
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.49 E-value=5.4e-07 Score=66.79 Aligned_cols=97 Identities=13% Similarity=0.064 Sum_probs=54.9
Q ss_pred cCeEEEEEEcCCchhhHHHHH-------hhh-----cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920 58 QKYTLNIWDVGGQRTIRSYWR-------NYF-----EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN 125 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~-------~~~-----~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~n 125 (185)
+++.+.++||||......... ... ..+|.+++|+|++.. .+... ....+.+.. .+.-+++|
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~----~~~g~IlT 225 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV----GLTGIILT 225 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC----CCCEEEEE
Confidence 357899999999643222211 111 238999999999753 22222 223333221 24678999
Q ss_pred cCCCCCCCCH-HHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 126 KQDINGALTP-TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 126 K~D~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
|.|....... -.+... .+.|+..++ +|++++++...
T Consensus 226 KlDe~~~~G~~l~~~~~---------~~~Pi~~~~--~Gq~~~dl~~~ 262 (272)
T TIGR00064 226 KLDGTAKGGIILSIAYE---------LKLPIKFIG--VGEKIDDLAPF 262 (272)
T ss_pred ccCCCCCccHHHHHHHH---------HCcCEEEEe--CCCChHhCccC
Confidence 9998654332 122221 345666666 78888776543
No 379
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.49 E-value=9.9e-08 Score=64.75 Aligned_cols=57 Identities=19% Similarity=0.215 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcc------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLG------FNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~------~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
-.++++|++|+|||||+|+|.+.... ..+...+ .....+... ....++||||..++.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~-~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLP-DGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEET-TSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecC-CCcEEEECCCCCccc
Confidence 57899999999999999999987432 1221111 112223332 246899999966543
No 380
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.47 E-value=2.6e-06 Score=66.66 Aligned_cols=110 Identities=19% Similarity=0.220 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHh------CCCCccc----------------ccCcceEEEEEE-----------------
Q 029920 16 EMRILMVGLDNSGKTTIVLKIN------GEDTSVI----------------SPTLGFNIKTVT----------------- 56 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~------~~~~~~~----------------~~t~~~~~~~~~----------------- 56 (185)
+-.|+++|++||||||++..|. +.+.... ....+.......
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4568999999999999998885 3222100 001111111110
Q ss_pred EcCeEEEEEEcCCchhhHH----HHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 57 YQKYTLNIWDVGGQRTIRS----YWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~~~~----~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
.+++.+.++||||...... ....+ ...+|.+++|+|++-...-.... ..+... -.+.-+|+||.|..
T Consensus 180 ~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a---~~F~~~----~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQA---KAFKDS----VDVGSVIITKLDGH 252 (429)
T ss_pred hCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHH---HHHHhc----cCCcEEEEECccCC
Confidence 0257899999999543321 11111 23568899999987543222222 222111 24577889999975
Q ss_pred CC
Q 029920 131 GA 132 (185)
Q Consensus 131 ~~ 132 (185)
..
T Consensus 253 ar 254 (429)
T TIGR01425 253 AK 254 (429)
T ss_pred CC
Confidence 43
No 381
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=2.9e-07 Score=70.47 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=34.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcc---------eEEEEEEEcCeEEEEEEcCCchh
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLG---------FNIKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~---------~~~~~~~~~~~~~~~~D~~g~~~ 72 (185)
.++++|++|+|||||+|+|.+..........+ .....+...+ ...++||||...
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~-g~~liDTPG~~~ 236 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPN-GGLLADTPGFNQ 236 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCC-CcEEEeCCCccc
Confidence 38999999999999999999765533222111 1122233322 127999999543
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.45 E-value=3.1e-07 Score=67.12 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=35.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccc---c--------CcceEEEEEEEcCeEEEEEEcCCchhh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVIS---P--------TLGFNIKTVTYQKYTLNIWDVGGQRTI 73 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~---~--------t~~~~~~~~~~~~~~~~~~D~~g~~~~ 73 (185)
-.++++|.+|+|||||+|+|.+....... . |..... +..++ ..++||||...+
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l--~~l~~--~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVEL--FHFHG--GLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEE--EEcCC--cEEEeCCCcccc
Confidence 47899999999999999999886442211 1 112222 22322 379999997653
No 383
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.44 E-value=7.6e-08 Score=73.60 Aligned_cols=112 Identities=19% Similarity=0.090 Sum_probs=80.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC--------Cc-------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED--------TS-------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~--------~~-------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
..+|.++.+-.+||||.-.++.-.. .. ..+-|+...-..++|.+..++++||||+-.|+
T Consensus 37 irnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~ 116 (753)
T KOG0464|consen 37 IRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFR 116 (753)
T ss_pred hhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEE
Confidence 3579999999999999988863211 10 00112222233467889999999999999999
Q ss_pred HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
-..+.+++--|+.+.|+|++..-.-+.+.- |++. ...++|-+.++||+|....
T Consensus 117 leverclrvldgavav~dasagve~qtltv-wrqa----dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 117 LEVERCLRVLDGAVAVFDASAGVEAQTLTV-WRQA----DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEHHHHHHHhcCeEEEEeccCCcccceeee-ehhc----cccCCchhhhhhhhhhhhh
Confidence 999999999999999999986433232222 2332 4447999999999997654
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.38 E-value=2.1e-06 Score=66.42 Aligned_cols=96 Identities=19% Similarity=0.178 Sum_probs=57.5
Q ss_pred hhhHHHHHhhhcCCC-EEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920 71 RTIRSYWRNYFEQTD-GLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM 147 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d-~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~ 147 (185)
+.+...... +...+ .+++|+|+.|.. ++. ..+..+. .+.|+++|+||+|+.... ..+++...... ..
T Consensus 57 ~~~~~~l~~-i~~~~~lIv~VVD~~D~~~s~~---~~L~~~~-----~~kpviLViNK~DLl~~~~~~~~i~~~l~~-~~ 126 (365)
T PRK13796 57 DDFLKLLNG-IGDSDALVVNVVDIFDFNGSWI---PGLHRFV-----GNNPVLLVGNKADLLPKSVKKNKVKNWLRQ-EA 126 (365)
T ss_pred HHHHHHHHh-hcccCcEEEEEEECccCCCchh---HHHHHHh-----CCCCEEEEEEchhhCCCccCHHHHHHHHHH-HH
Confidence 344444433 34445 889999998732 222 2222222 267899999999986432 22222222111 11
Q ss_pred cCccc---eEEEeecccCCCCHHHHHHHHHHHH
Q 029920 148 DKTRH---WKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 148 ~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
.. .+ ..++.+||+++.|++++++.+.+..
T Consensus 127 k~-~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 127 KE-LGLRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred Hh-cCCCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 11 12 2579999999999999999997764
No 385
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.35 E-value=3.2e-06 Score=64.18 Aligned_cols=157 Identities=18% Similarity=0.175 Sum_probs=90.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc-----------------ccc--cCcc-----eEE------------------E
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS-----------------VIS--PTLG-----FNI------------------K 53 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~-----------------~~~--~t~~-----~~~------------------~ 53 (185)
..+|+|+|...+|||||+--|.+.... +.. +..+ +.. +
T Consensus 133 E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvk 212 (641)
T KOG0463|consen 133 EARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVK 212 (641)
T ss_pred eEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCccccee
Confidence 479999999999999998777543321 000 1111 100 0
Q ss_pred EEEEcCeEEEEEEcCCchhhHHHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 54 TVTYQKYTLNIWDVGGQRTIRSYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 54 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
..+....-+.++|.+|++.+........ .-.|..++++-++..- .--..+.+--.+.. ..|+.+|.+|+|...
T Consensus 213 Ice~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL----~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 213 ICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALAL----HVPVFVVVTKIDMCP 287 (641)
T ss_pred eccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhh----cCcEEEEEEeeccCc
Confidence 0111225688999999998765443322 3468888888776421 11112222222222 699999999999987
Q ss_pred CCCHHHHHHhc----Ccc--------------------cccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 132 ALTPTEIAKVL----NLE--------------------AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 132 ~~~~~~~~~~~----~~~--------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
++...+-...+ ... .+....-+|+|.+|..+|.|++-+. .....+.
T Consensus 288 ANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk-mFLNlls 357 (641)
T KOG0463|consen 288 ANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK-MFLNLLS 357 (641)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH-HHHhhcC
Confidence 65444322211 110 1111245789999999999996544 3344443
No 386
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.35 E-value=2.8e-06 Score=61.99 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=77.1
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----cCcceEEEEEEE--cC--eEEEEEEcCCchh------
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTY--QK--YTLNIWDVGGQRT------ 72 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~--~~--~~~~~~D~~g~~~------ 72 (185)
+.+-...-.++|+-+|..|.|||||+.+|.+-.+.... |+......+.+. .+ ..+.++||.|-..
T Consensus 34 ~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~ 113 (406)
T KOG3859|consen 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED 113 (406)
T ss_pred HHHHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc
Confidence 33444556799999999999999999999988775332 222222222222 23 5788999999111
Q ss_pred --------hHHHHHhhh---------------cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 73 --------IRSYWRNYF---------------EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 73 --------~~~~~~~~~---------------~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
..+..+.|+ ...++++|.+..+. .++..+......-+.. ...+|-++-|.|.
T Consensus 114 Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Lds----kVNIIPvIAKaDt 188 (406)
T KOG3859|consen 114 SYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLDS----KVNIIPVIAKADT 188 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHhh----hhhhHHHHHHhhh
Confidence 111122222 34688888887764 3555544333333332 5778888999998
Q ss_pred CCCCCHHHHHH
Q 029920 130 NGALTPTEIAK 140 (185)
Q Consensus 130 ~~~~~~~~~~~ 140 (185)
....+......
T Consensus 189 isK~eL~~FK~ 199 (406)
T KOG3859|consen 189 ISKEELKRFKI 199 (406)
T ss_pred hhHHHHHHHHH
Confidence 76655444443
No 387
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.30 E-value=3.8e-06 Score=57.31 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-+.+.|+.|+|||||++.+...
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3678999999999999988654
No 388
>PRK01889 GTPase RsgA; Reviewed
Probab=98.29 E-value=5.8e-06 Score=63.74 Aligned_cols=84 Identities=23% Similarity=0.197 Sum_probs=55.3
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
..++|.+++|+++..+-+...+..++... ...+++.++|+||+|+.+. ..+....+.. . ..+.+++.+|+
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a----~~~~i~piIVLNK~DL~~~--~~~~~~~~~~--~--~~g~~Vi~vSa 179 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALA----WESGAEPVIVLTKADLCED--AEEKIAEVEA--L--APGVPVLAVSA 179 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHH----HHcCCCEEEEEEChhcCCC--HHHHHHHHHH--h--CCCCcEEEEEC
Confidence 57889999999996433333333333333 2236788999999999754 2112111111 1 14678999999
Q ss_pred cCCCCHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLV 174 (185)
Q Consensus 161 ~~~~~i~~l~~~l~ 174 (185)
+++.|++++.+++.
T Consensus 180 ~~g~gl~~L~~~L~ 193 (356)
T PRK01889 180 LDGEGLDVLAAWLS 193 (356)
T ss_pred CCCccHHHHHHHhh
Confidence 99999999888764
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.27 E-value=1.4e-06 Score=65.17 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccccc-------CcceE--EEEEEEcCeEEEEEEcCCchhhH
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISP-------TLGFN--IKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~-------t~~~~--~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
-.++++|++|+|||||+|+|.+........ ...++ ...+...+ ...++||||..++.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~-~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPG-GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCC-CCEEEECCCCCccC
Confidence 579999999999999999998865432211 00111 12222221 23699999987643
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=2.2e-06 Score=65.95 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=62.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC------c--cc-ccC---------------cceEEEEE-----------EEcCeE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT------S--VI-SPT---------------LGFNIKTV-----------TYQKYT 61 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~------~--~~-~~t---------------~~~~~~~~-----------~~~~~~ 61 (185)
-.++++|++|+||||++..|..... . .. ..+ .+...... ...+..
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D 217 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH 217 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence 4788999999999999988854211 0 00 001 11111111 123568
Q ss_pred EEEEEcCCchhhHHH---HHhhh---cCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccC-CCeEEEEeecCCCCCC
Q 029920 62 LNIWDVGGQRTIRSY---WRNYF---EQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLS-GASLLILANKQDINGA 132 (185)
Q Consensus 62 ~~~~D~~g~~~~~~~---~~~~~---~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~-~~~~ivv~nK~D~~~~ 132 (185)
+.++||+|....... ....+ ...+-.++|++++. .+......+.+.......... ...-=+|+||.|....
T Consensus 218 lVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~ 296 (374)
T PRK14722 218 MVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASN 296 (374)
T ss_pred EEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCC
Confidence 999999995532211 11112 23456688999886 333344333333332111000 0134578899997654
No 391
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.25 E-value=6.5e-05 Score=58.24 Aligned_cols=149 Identities=20% Similarity=0.211 Sum_probs=79.2
Q ss_pred HHHHHh-hccCceeEEEEEcCCCCChHHHHHHHhCCCC-----------------c--ccccCcceE--------EEEEE
Q 029920 5 SIIRKI-KKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----------------S--VISPTLGFN--------IKTVT 56 (185)
Q Consensus 5 ~~~~~~-~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----------------~--~~~~t~~~~--------~~~~~ 56 (185)
..++.. .+-...+=++|+||.-+||||||++|...-. + ..+.|+-++ -..+.
T Consensus 5 ~iykDIa~RT~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~ 84 (492)
T PF09547_consen 5 DIYKDIAERTGGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEIT 84 (492)
T ss_pred hHHHHHHHhcCCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEE
Confidence 344443 2345678899999999999999999843111 1 111111111 11122
Q ss_pred E---cCeEEEEEEcCC-------------chh------------hHHH----HHhhh--cCCCEEEEEEeCC--C--ccc
Q 029920 57 Y---QKYTLNIWDVGG-------------QRT------------IRSY----WRNYF--EQTDGLVWVVDSS--D--LRR 98 (185)
Q Consensus 57 ~---~~~~~~~~D~~g-------------~~~------------~~~~----~~~~~--~~~d~~i~v~d~~--~--~~s 98 (185)
. -..+++++|+.| .++ |... .+..+ +..=++++.-|.+ + +++
T Consensus 85 l~~~~~~kVRLiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~ 164 (492)
T PF09547_consen 85 LDDGIKVKVRLIDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPREN 164 (492)
T ss_pred ecCCceEEEEEEeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHH
Confidence 2 237899999988 000 1100 01111 1223566666655 2 455
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 99 LDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+..+.+..-.-++.. ++|+++++|-.+-.+. +..++...+.. ..+.|++++++..
T Consensus 165 Y~eAEervI~ELk~i---gKPFvillNs~~P~s~-et~~L~~eL~e-----kY~vpVlpvnc~~ 219 (492)
T PF09547_consen 165 YVEAEERVIEELKEI---GKPFVILLNSTKPYSE-ETQELAEELEE-----KYDVPVLPVNCEQ 219 (492)
T ss_pred HHHHHHHHHHHHHHh---CCCEEEEEeCCCCCCH-HHHHHHHHHHH-----HhCCcEEEeehHH
Confidence 655554333333333 7999999998875443 22333333332 1677888876654
No 392
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.25 E-value=1.3e-06 Score=68.37 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=44.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEE-cCeEEEEEEcCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTY-QKYTLNIWDVGG 69 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~D~~g 69 (185)
.+.|++||-||+||||+||+|.|.+.-.++.|+|-+.+.-.+ -.-.+.+.|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcCCCceecCCCC
Confidence 589999999999999999999999998888888865554222 234688999999
No 393
>PRK00098 GTPase RsgA; Reviewed
Probab=98.23 E-value=3.3e-06 Score=63.55 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCc---------ceEEEEEEEcCeEEEEEEcCCchh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTL---------GFNIKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~---------~~~~~~~~~~~~~~~~~D~~g~~~ 72 (185)
-.++++|++|+|||||+|+|.+.......... ......+...+ ...++||||...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~~~~~-~~~~~DtpG~~~ 228 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELYDLPG-GGLLIDTPGFSS 228 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEEEcCC-CcEEEECCCcCc
Confidence 46899999999999999999886553222111 01122222322 247899999764
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.14 E-value=5.5e-06 Score=58.52 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=36.8
Q ss_pred CeEEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+.++||||...... ....++ ...+-+++|.+++.... ... ....+.... + +-=+++||.|....
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~--~~~-~~~~~~~~~---~-~~~lIlTKlDet~~ 155 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQE--DLE-QALAFYEAF---G-IDGLILTKLDETAR 155 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGH--HHH-HHHHHHHHS---S-TCEEEEESTTSSST
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChH--HHH-HHHHHhhcc---c-CceEEEEeecCCCC
Confidence 36799999999443221 111111 25789999999986432 222 222222221 1 23566999997654
No 395
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.12 E-value=3.9e-06 Score=62.22 Aligned_cols=56 Identities=23% Similarity=0.262 Sum_probs=34.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc---ccccCcc------eEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS---VISPTLG------FNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~------~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
..+++|.+|+|||||+|+|.+.... ..+...+ ....-+... ..=.++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~-~gG~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLP-GGGWIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcC-CCCEEEeCCCCCccC
Confidence 6789999999999999999874432 2222221 111222221 123689999977654
No 396
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.12 E-value=3.2e-05 Score=57.57 Aligned_cols=111 Identities=11% Similarity=0.097 Sum_probs=67.2
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCC------------------
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGG------------------ 69 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g------------------ 69 (185)
-...+..+..+++++|++|.|||+++++|...+.+...... ...++..+.+|.
T Consensus 53 l~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~---------~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 53 LEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDA---------ERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCC---------ccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34455677789999999999999999999987754332111 112455555544
Q ss_pred ------chhhHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 70 ------QRTIRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 70 ------~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
...........++...+-++++|--+ ..+.......+..+....+.-++|++.++++-
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 11223334456788889999999443 12333333332322222334479999998753
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.10 E-value=7.1e-06 Score=56.78 Aligned_cols=67 Identities=16% Similarity=0.178 Sum_probs=38.9
Q ss_pred CeEEEEEEcCCchhhH----HHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIR----SYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+.++|+||..... ....... ...+.+++|+|.....+ ..+....+.+.. + ..-+++||.|....
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~---~-~~~viltk~D~~~~ 154 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEAL---G-ITGVILTKLDGDAR 154 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhC---C-CCEEEEECCcCCCC
Confidence 4568999999964221 1111111 34899999999875432 223333333221 2 35677799997554
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.10 E-value=5.7e-06 Score=55.82 Aligned_cols=58 Identities=16% Similarity=0.125 Sum_probs=34.3
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 128 (185)
++.+.++||+|.... ...++..+|.++++....-.+.+.-.. ... + ..-=++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k--~~~-~------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIK--AGI-M------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhh--hhH-h------hhcCEEEEeCCC
Confidence 468999999886532 234678899888887654211111111 111 1 233578899987
No 399
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=3.5e-06 Score=66.14 Aligned_cols=128 Identities=20% Similarity=0.225 Sum_probs=82.7
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc---------------ccCcceEEEEE-------------------
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI---------------SPTLGFNIKTV------------------- 55 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---------------~~t~~~~~~~~------------------- 55 (185)
+.+..+..++.|+.+..-|||||-.+|..+.-... ....+++.+..
T Consensus 13 M~k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~ 92 (842)
T KOG0469|consen 13 MDKKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQE 92 (842)
T ss_pred hccccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCC
Confidence 33455566799999999999999998854322110 11222232221
Q ss_pred -EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---C
Q 029920 56 -TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---G 131 (185)
Q Consensus 56 -~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---~ 131 (185)
+.+++-++++|.||+-.|.+.....++-.|+.++|+|+.+.--.+.. ..+++.+.. .+.-+++.||.|.. -
T Consensus 93 ~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E----RIkPvlv~NK~DRAlLEL 167 (842)
T KOG0469|consen 93 GDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE----RIKPVLVMNKMDRALLEL 167 (842)
T ss_pred CCCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh----hccceEEeehhhHHHHhh
Confidence 11347899999999999999999999999999999999875333321 122333232 35567889999942 2
Q ss_pred CCCHHHHHHhc
Q 029920 132 ALTPTEIAKVL 142 (185)
Q Consensus 132 ~~~~~~~~~~~ 142 (185)
....+++.+.+
T Consensus 168 q~~~EeLyqtf 178 (842)
T KOG0469|consen 168 QLSQEELYQTF 178 (842)
T ss_pred cCCHHHHHHHH
Confidence 33455555444
No 400
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=6.3e-05 Score=65.36 Aligned_cols=112 Identities=20% Similarity=0.321 Sum_probs=63.1
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCccccc-----CcceEEEEEEE-cCeEEEEEEcCC----c----hhhHHHHHhhh---
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTSVISP-----TLGFNIKTVTY-QKYTLNIWDVGG----Q----RTIRSYWRNYF--- 81 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~D~~g----~----~~~~~~~~~~~--- 81 (185)
-+|+|++|+||||++.. .+..++.... ..+.....+++ -.-.-.++||.| + +.-...|..++
T Consensus 128 y~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lL 206 (1188)
T COG3523 128 YMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLL 206 (1188)
T ss_pred eEEecCCCCCcchHHhc-ccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHHHHH
Confidence 57889999999998764 2333322111 11111111112 224678899988 2 22334555442
Q ss_pred ------cCCCEEEEEEeCCCcc----cHH-H----HHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 82 ------EQTDGLVWVVDSSDLR----RLD-D----CKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 82 ------~~~d~~i~v~d~~~~~----s~~-~----~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+++|+++|+.+-- ... . +..-++++... -....|+.+++||.|+..-
T Consensus 207 kk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 207 KKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccccc
Confidence 4579999999977521 111 1 22223333322 2336899999999998763
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=6.4e-06 Score=64.41 Aligned_cols=110 Identities=12% Similarity=0.091 Sum_probs=60.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC-----cc----ccc---------------CcceEEEEE-----------EEcCe
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT-----SV----ISP---------------TLGFNIKTV-----------TYQKY 60 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~-----~~----~~~---------------t~~~~~~~~-----------~~~~~ 60 (185)
.-.++++|+.|+||||++..|.+... .. ... ..++..... ...+.
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~~ 270 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRGK 270 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcCC
Confidence 34799999999999999998765311 00 000 111111111 12346
Q ss_pred EEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 61 TLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 61 ~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
...++||+|...... ...... ...+-.++|+|++.. .+.+.+.+..+-. -..-=+++||.|....
T Consensus 271 d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~-----~~~~~~I~TKlDEt~~ 341 (420)
T PRK14721 271 HMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQG-----HGIHGCIITKVDEAAS 341 (420)
T ss_pred CEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeeeCCCC
Confidence 789999999554322 111211 234577899999842 2222232222211 1234578999997654
No 402
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=1.3e-05 Score=64.11 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=59.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC--------CCcccc-c---------------CcceEEEEE-----------EEcCe
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE--------DTSVIS-P---------------TLGFNIKTV-----------TYQKY 60 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~--------~~~~~~-~---------------t~~~~~~~~-----------~~~~~ 60 (185)
.-.++++|+.|+||||++..|... ...... . ..++..... ...++
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~~ 429 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDY 429 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhccC
Confidence 357899999999999999887531 111000 0 111111111 11347
Q ss_pred EEEEEEcCCchhhHHHHHh---hh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 61 TLNIWDVGGQRTIRSYWRN---YF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 61 ~~~~~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.+.++||+|.......... .+ ......++|++.+. +...+...+..+.. ..+.-+|+||.|....
T Consensus 430 DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~~ 499 (559)
T PRK12727 430 KLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETGR 499 (559)
T ss_pred CEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCccc
Confidence 8999999995432211110 11 11235677777764 23333333333322 2457799999998554
No 403
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.02 E-value=2.1e-06 Score=65.40 Aligned_cols=56 Identities=16% Similarity=0.340 Sum_probs=44.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~ 70 (185)
+..++++|+|-||+||||+||+|...+.-..+.+.|.+..- +. -+..+.++|.||.
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~-Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVK-LDKKIRLLDSPGI 307 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhhee-ccCCceeccCCce
Confidence 66799999999999999999999988886666666654332 22 2358899999993
No 404
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.99 E-value=1.2e-05 Score=59.59 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=41.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCcceEEEE---EEE-cCeEEEEEEcCCc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTLGFNIKT---VTY-QKYTLNIWDVGGQ 70 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~~~~~~~---~~~-~~~~~~~~D~~g~ 70 (185)
....+++.|+|-||+|||||+|++...+. ...++..|++... +.+ +.-.+.++||||.
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGi 206 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGI 206 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCc
Confidence 45678999999999999999999865444 2344555555443 333 4457899999994
No 405
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.96 E-value=9.3e-05 Score=52.10 Aligned_cols=117 Identities=15% Similarity=0.086 Sum_probs=61.0
Q ss_pred eEEEEEEcCCchhhH-------HHHHhhh--cCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 60 YTLNIWDVGGQRTIR-------SYWRNYF--EQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~-------~~~~~~~--~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
-.+.+.|.|||-+.. +..++.- .---.++|++|..= .++.+.....+..+... ..-..|-|=|++|.|+
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAM-i~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAM-ISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHH-HHhcCcchhhhhHHHH
Confidence 468899999965532 2222211 11234555666432 12222222222222111 1226899999999998
Q ss_pred CCCCCHHHHHHhcCcc--------------------------cccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 130 NGALTPTEIAKVLNLE--------------------------AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
......+++...+... ......-+.|++....+.+.++.++..|-..+
T Consensus 177 lk~~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 177 LKDKNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred hhhhhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 7664444444333211 11122345677777777777777777766555
No 406
>PRK13695 putative NTPase; Provisional
Probab=97.94 E-value=0.00029 Score=48.78 Aligned_cols=21 Identities=52% Similarity=0.699 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 029920 17 MRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~ 37 (185)
.+|++.|++|+|||||+..+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999864
No 407
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.94 E-value=2.9e-05 Score=59.85 Aligned_cols=111 Identities=15% Similarity=0.180 Sum_probs=60.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCC-cccccC-----------------------cceEEEEE-----------EEcC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDT-SVISPT-----------------------LGFNIKTV-----------TYQK 59 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t-----------------------~~~~~~~~-----------~~~~ 59 (185)
+.-.|+++||.|+||||-+-.|..... ...... .+...... ...+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 356789999999999999877754333 111111 11111111 1134
Q ss_pred eEEEEEEcCCchhhH----HHHHhhhcCC--CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 60 YTLNIWDVGGQRTIR----SYWRNYFEQT--DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~----~~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
..+.++||.|..... .....++..+ .-+-+|++++.. .+.+..-+..+... ..--+++||.|-...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~-----~i~~~I~TKlDET~s 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLF-----PIDGLIFTKLDETTS 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccC-----CcceeEEEcccccCc
Confidence 689999999954322 2333344333 445567777752 23333333333211 123478899997554
No 408
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.92 E-value=7.5e-05 Score=57.87 Aligned_cols=110 Identities=20% Similarity=0.171 Sum_probs=60.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC------CCccc----------------ccCcceEEEEEE--------------EcC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE------DTSVI----------------SPTLGFNIKTVT--------------YQK 59 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~------~~~~~----------------~~t~~~~~~~~~--------------~~~ 59 (185)
+..|+++|+.||||||++..|... ..... ....++...... ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 467999999999999999888531 11000 001111111110 013
Q ss_pred eEEEEEEcCCchhhHH----HHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 60 YTLNIWDVGGQRTIRS----YWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
..+.++||+|...... .....+ ...+.+++|+|++.. ...+...+..+-. -..-=+++||.|....
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~-----~~idglI~TKLDET~k 392 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 392 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcC-----CCCCEEEEEcccCCCC
Confidence 5899999999533211 122222 245788999998642 1222232233211 1235578999997664
No 409
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.92 E-value=1.8e-05 Score=52.01 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
--+.|.|++|+|||++++.+....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHh
Confidence 347899999999999999987653
No 410
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.90 E-value=0.00014 Score=50.60 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=46.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEE----EEcC-CchhhHHHHHhhhcCCCEEEE--
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNI----WDVG-GQRTIRSYWRNYFEQTDGLVW-- 89 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~----~D~~-g~~~~~~~~~~~~~~~d~~i~-- 89 (185)
=.++++|+.|+|||||++.+.+...+.. +. +.+++..+.. .+.. |+...-.........++++++
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~----G~----i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDE 97 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNG----DN----DEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDE 97 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCC----cE----EEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 3689999999999999999998754321 11 1111111111 1133 344444555666677777666
Q ss_pred EEeCCCcccHHHHHHHHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNL 109 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~ 109 (185)
-...-|+.+-..+..++..+
T Consensus 98 Pts~LD~~~~~~l~~~l~~~ 117 (177)
T cd03222 98 PSAYLDIEQRLNAARAIRRL 117 (177)
T ss_pred CcccCCHHHHHHHHHHHHHH
Confidence 11123444444444555444
No 411
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.90 E-value=6.6e-05 Score=41.49 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=27.6
Q ss_pred CCCEEEEEEeCCC--cccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920 83 QTDGLVWVVDSSD--LRRLDDCKMELDNLLKEERLSGASLLILANKQD 128 (185)
Q Consensus 83 ~~d~~i~v~d~~~--~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 128 (185)
-.++++|++|.+. ..+.+.....+.++.... .++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 3589999999996 456666666666665433 3899999999998
No 412
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.90 E-value=0.0003 Score=53.42 Aligned_cols=92 Identities=17% Similarity=0.176 Sum_probs=50.8
Q ss_pred eEEEEEEcCCchhhHHHHHhhhc--------CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 60 YTLNIWDVGGQRTIRSYWRNYFE--------QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~~~~~~~~~--------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
....++.|.|..........++. ..|.++-|+|+.+- .........+....- ..-=++++||+|+.+
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~---~~~~~~~~~~~~~Qi--a~AD~ivlNK~Dlv~ 159 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHF---LEGLDAIAELAEDQL--AFADVIVLNKTDLVD 159 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHh---hhhHHHHHHHHHHHH--HhCcEEEEecccCCC
Confidence 56677888886554444333332 23778999998762 222221222222111 123578999999988
Q ss_pred CCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+...+.+...+.... +..+++.+|.
T Consensus 160 ~~~l~~l~~~l~~ln----p~A~i~~~~~ 184 (323)
T COG0523 160 AEELEALEARLRKLN----PRARIIETSY 184 (323)
T ss_pred HHHHHHHHHHHHHhC----CCCeEEEccc
Confidence 764444444333211 5566777776
No 413
>PRK04195 replication factor C large subunit; Provisional
Probab=97.85 E-value=0.00026 Score=56.93 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=26.4
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.|+.........-.+++.|++|+||||+++.++..
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 44544443333567999999999999999999775
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.84 E-value=6.8e-05 Score=59.19 Aligned_cols=111 Identities=22% Similarity=0.285 Sum_probs=59.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC----C--CCc-----cccc-----------CcceEEEEE---------------EE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING----E--DTS-----VISP-----------TLGFNIKTV---------------TY 57 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~----~--~~~-----~~~~-----------t~~~~~~~~---------------~~ 57 (185)
++..|+++|++|+||||++..|.. . ... .+.+ ..+...... ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 466799999999999999877632 1 110 0000 011111100 00
Q ss_pred cCeEEEEEEcCCchhhHHH----HH--hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 58 QKYTLNIWDVGGQRTIRSY----WR--NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
....+.++||||....... .. .....+|.+++|+|++... ........+.... ...-+|+||.|...
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l----~i~gvIlTKlD~~a 246 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV----GIGGIIITKLDGTA 246 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC----CCCEEEEecccCCC
Confidence 1247899999995443211 11 1134679999999987642 2222222221111 12457789999754
Q ss_pred C
Q 029920 132 A 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 247 ~ 247 (437)
T PRK00771 247 K 247 (437)
T ss_pred c
Confidence 3
No 415
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.83 E-value=7.1e-05 Score=59.63 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
--++++|+.|+||||++..|.+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 3589999999999999988864
No 416
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.82 E-value=0.00018 Score=44.28 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=54.8
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHH-HHhhhcCCCEEEEEEeCCCcc
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSY-WRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d~~~~~ 97 (185)
+++.|.+|+||||+...+...--. .+.....++ .+.++|+++....... .......+|.++++++....
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~-----~g~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~- 71 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK-----RGKRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL- 71 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh-
Confidence 578899999999998877543211 111111111 8899999986543321 13445678999999987643
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILAN 125 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~n 125 (185)
+....................+..+++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 72 AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 3333333322222222223455555554
No 417
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.82 E-value=7.9e-06 Score=62.42 Aligned_cols=87 Identities=17% Similarity=0.216 Sum_probs=55.3
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE-EEEEcCeEEEEEEcCCchhh--HHHHHhhhcCC
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK-TVTYQKYTLNIWDVGGQRTI--RSYWRNYFEQT 84 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~D~~g~~~~--~~~~~~~~~~~ 84 (185)
..+-..+..+-|+++|-||+||||+||+|..+..-...|..|.+.. .+..--..+-++|+||.--. .......++
T Consensus 299 ~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps~dset~ivLk-- 376 (572)
T KOG2423|consen 299 AKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPSSDSETDIVLK-- 376 (572)
T ss_pred HhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHHHhceeEecCCCccCCCCCchHHHHhh--
Confidence 3344477889999999999999999999999998777776663321 10001136778999994211 122222222
Q ss_pred CEEEEEEeCCCcc
Q 029920 85 DGLVWVVDSSDLR 97 (185)
Q Consensus 85 d~~i~v~d~~~~~ 97 (185)
+++-|=.+.+|+
T Consensus 377 -GvVRVenv~~pe 388 (572)
T KOG2423|consen 377 -GVVRVENVKNPE 388 (572)
T ss_pred -ceeeeeecCCHH
Confidence 445555566654
No 418
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.82 E-value=1.5e-05 Score=57.40 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-|+++|++|||||||++.+.|-..
T Consensus 31 fvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 479999999999999999987544
No 419
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=0.00011 Score=56.64 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 029920 16 EMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~ 37 (185)
.-.++++|+.||||||++..|.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999988875
No 420
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.81 E-value=4e-05 Score=63.93 Aligned_cols=111 Identities=14% Similarity=0.083 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccc---------cc---------------CcceEEEEE-----------EEcCeE
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVI---------SP---------------TLGFNIKTV-----------TYQKYT 61 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~---------~~---------------t~~~~~~~~-----------~~~~~~ 61 (185)
--++++|+.|+||||++..|.+...... .. ..+...... ...+..
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D 265 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKH 265 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCC
Confidence 3589999999999999988865321000 00 011111110 113467
Q ss_pred EEEEEcCCchhh----HHHHHhh--hcCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 62 LNIWDVGGQRTI----RSYWRNY--FEQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 62 ~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+.++||+|.... ....... ....+-.++|+|++. .+.+.++...+..... -.+-=+|+||.|....
T Consensus 266 ~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~-----~~i~glIlTKLDEt~~ 338 (767)
T PRK14723 266 LVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAG-----EDVDGCIITKLDEATH 338 (767)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhccc-----CCCCEEEEeccCCCCC
Confidence 999999993221 1111111 234577899999985 3333333332222110 0234578999997654
No 421
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.81 E-value=7e-05 Score=51.67 Aligned_cols=53 Identities=15% Similarity=0.203 Sum_probs=33.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~ 72 (185)
....-++|+|.+|||||||++++...-.. .+.....+......+.+ |.+|.+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~-----~g~~vg~Ik~~~~~~~~-d~~g~Ds 56 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCA-----RGIRPGLIKHTHHDMDV-DKPGKDS 56 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhh-----cCCeEEEEEEcCCCccc-CCCCcHH
Confidence 34557899999999999999998765211 12223344443333333 7777544
No 422
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.81 E-value=2e-05 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.|+|.|++||||||+++.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999865
No 423
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.79 E-value=0.00058 Score=45.12 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
......+.+.|++|+|||++++.+....
T Consensus 16 ~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 16 LPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3345679999999999999999987664
No 424
>PRK10867 signal recognition particle protein; Provisional
Probab=97.79 E-value=5e-05 Score=59.81 Aligned_cols=67 Identities=18% Similarity=0.164 Sum_probs=36.7
Q ss_pred CeEEEEEEcCCchhhH----HHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIR----SYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
++.+.++||||..... ...... .-..+.+++|+|+... +........+.... ...-+|+||.|....
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~----~i~giIlTKlD~~~r 255 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL----GLTGVILTKLDGDAR 255 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 3679999999943221 111111 1256888999998753 23333333332211 124567799996443
No 425
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.78 E-value=0.00023 Score=47.80 Aligned_cols=64 Identities=25% Similarity=0.377 Sum_probs=37.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCe-EEEEE-EcC-CchhhHHHHHhhhcCCCEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKY-TLNIW-DVG-GQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~-D~~-g~~~~~~~~~~~~~~~d~~i~ 89 (185)
.++++|+.|+|||||++.+.+...+.. + .+.+++. .+.+. ... |+...-.+......+++++++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~----G----~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illl 94 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDE----G----IVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLL 94 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCc----e----EEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 578999999999999999998754321 1 1122211 11111 133 344444555666677776666
No 426
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.77 E-value=0.00038 Score=52.91 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.+|-|.-|||||||+|++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 44678899999999999998653
No 427
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.74 E-value=0.00022 Score=48.91 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS 42 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~ 42 (185)
.++++|+.|+|||||++.+.+...+
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 6889999999999999999987543
No 428
>PRK08118 topology modulation protein; Reviewed
Probab=97.72 E-value=2.9e-05 Score=53.48 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+|+|+|++|||||||...|...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999998754
No 429
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.72 E-value=7.8e-05 Score=58.21 Aligned_cols=110 Identities=20% Similarity=0.202 Sum_probs=59.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC-------Cc-----c-----------cccCcceEEEEE----------EEcCeEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED-------TS-----V-----------ISPTLGFNIKTV----------TYQKYTL 62 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~-------~~-----~-----------~~~t~~~~~~~~----------~~~~~~~ 62 (185)
...++++|++||||||++..|.... .. . +....+...... .-++..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 3458899999999999998875321 10 0 000111111111 1135688
Q ss_pred EEEEcCCchhhH----HHHHhhhc-----CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 63 NIWDVGGQRTIR----SYWRNYFE-----QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 63 ~~~D~~g~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.++||||..... ..+..+++ ..+-.++|+|++... +........+ .. -.+-=+++||.|-...
T Consensus 303 VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f-~~----~~~~glIlTKLDEt~~ 374 (432)
T PRK12724 303 ILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAY-ES----LNYRRILLTKLDEADF 374 (432)
T ss_pred EEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHh-cC----CCCCEEEEEcccCCCC
Confidence 999999954221 11222222 245688999988632 2222322222 21 1235688999997654
No 430
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.71 E-value=4.4e-05 Score=60.10 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=37.6
Q ss_pred CeEEEEEEcCCchhhH----HHHHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIR----SYWRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~----~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
++.+.++||||..... ..... ..-..|.+++|+|++.. +........+.... ...=+|+||.|....
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v----~i~giIlTKlD~~~~ 254 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERL----GLTGVVLTKLDGDAR 254 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhC----CCCEEEEeCccCccc
Confidence 3579999999943221 11111 12357889999998753 23333333332221 124567899996443
No 431
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.70 E-value=2.2e-05 Score=56.03 Aligned_cols=69 Identities=16% Similarity=0.122 Sum_probs=38.2
Q ss_pred eEEEEEEcCCchhhH------HHHHhhhcCCCEEEEEEeCC------CcccHHHHH-HHHHHHHhccccCCCeEEEEeec
Q 029920 60 YTLNIWDVGGQRTIR------SYWRNYFEQTDGLVWVVDSS------DLRRLDDCK-MELDNLLKEERLSGASLLILANK 126 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~------~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK 126 (185)
..+.+.|.|||-++. ......++.-+.-+.++.+. +|..|-... ..+...+. ...|=+=|+.|
T Consensus 97 ~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~----melphVNvlSK 172 (290)
T KOG1533|consen 97 DHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLH----MELPHVNVLSK 172 (290)
T ss_pred CcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHh----hcccchhhhhH
Confidence 578999999964431 22233344556555555533 454443322 11222222 25777888999
Q ss_pred CCCCCC
Q 029920 127 QDINGA 132 (185)
Q Consensus 127 ~D~~~~ 132 (185)
+|+...
T Consensus 173 ~Dl~~~ 178 (290)
T KOG1533|consen 173 ADLLKK 178 (290)
T ss_pred hHHHHh
Confidence 998654
No 432
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.70 E-value=5.7e-05 Score=59.58 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=37.1
Q ss_pred CeEEEEEEcCCchhhH----HHHHhhhc---CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIR----SYWRNYFE---QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
+..+.++||||..... .....++. ...-..+|++++.. ...+.+.+..+ .. -+ +--+++||.|...
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f-~~---~~-~~~vI~TKlDet~ 371 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF-SR---LP-LDGLIFTKLDETS 371 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh-CC---CC-CCEEEEecccccc
Confidence 4689999999954322 22233333 33567888888642 22222222222 11 11 2368899999855
Q ss_pred C
Q 029920 132 A 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 372 ~ 372 (424)
T PRK05703 372 S 372 (424)
T ss_pred c
Confidence 4
No 433
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.70 E-value=3.2e-05 Score=51.60 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|+++|+|||||||+++.+...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998743
No 434
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00013 Score=56.83 Aligned_cols=110 Identities=16% Similarity=0.219 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC----------CCc-----cc-----------ccCcceEEEEE-----------EEc
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE----------DTS-----VI-----------SPTLGFNIKTV-----------TYQ 58 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~----------~~~-----~~-----------~~t~~~~~~~~-----------~~~ 58 (185)
+..|+++|+.|+||||.+..|... ... .+ ....++..... ...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 457999999999999998877531 110 00 00111111111 114
Q ss_pred CeEEEEEEcCCchhhH----HHHHhhhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIR----SYWRNYFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~----~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
+..+.++||+|..... ......+.. .+-.++|+|++.. ...+...+..+.. -.+-=+++||.|...
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~-----~~~~~~I~TKlDet~ 326 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSP-----FSYKTVIFTKLDETT 326 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcC-----CCCCEEEEEeccCCC
Confidence 5789999999953321 122223332 2368899999864 2333333333311 124568899999765
Q ss_pred C
Q 029920 132 A 132 (185)
Q Consensus 132 ~ 132 (185)
.
T Consensus 327 ~ 327 (388)
T PRK12723 327 C 327 (388)
T ss_pred c
Confidence 4
No 435
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.67 E-value=9.8e-05 Score=51.11 Aligned_cols=55 Identities=18% Similarity=0.152 Sum_probs=33.0
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~ 142 (185)
|++++|+|+.++.+-.. ..+...+. ....+.|+++|+||+|+.+.....++...+
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~-l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~ 55 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVL-QAGGNKKLVLVLNKIDLVPKENVEKWLKYL 55 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHH-hccCCCCEEEEEehhhcCCHHHHHHHHHHH
Confidence 78999999988633221 12222211 122368999999999997654444444433
No 436
>PRK07261 topology modulation protein; Provisional
Probab=97.67 E-value=3.9e-05 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
+|+|+|++|||||||+..|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998654
No 437
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.66 E-value=4e-05 Score=53.28 Aligned_cols=23 Identities=39% Similarity=0.679 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+|+|+|+|||||||+...|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999876
No 438
>PF05729 NACHT: NACHT domain
Probab=97.63 E-value=0.00049 Score=46.80 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-+.|.|++|+||||++..++..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHH
Confidence 3789999999999999987653
No 439
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.00026 Score=54.28 Aligned_cols=91 Identities=22% Similarity=0.305 Sum_probs=51.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC--------------CCCcc-c---------ccCcceEEE---------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING--------------EDTSV-I---------SPTLGFNIK--------------- 53 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~--------------~~~~~-~---------~~t~~~~~~--------------- 53 (185)
..++--|.++|..|+||||.+-.|.. ..+.. . ....++.-.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~ 177 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVD 177 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHH
Confidence 34445689999999999999887732 11110 0 001111111
Q ss_pred EEEEcCeEEEEEEcCCchhhHH-HH---Hhh--hcCCCEEEEEEeCCCcccHHHHH
Q 029920 54 TVTYQKYTLNIWDVGGQRTIRS-YW---RNY--FEQTDGLVWVVDSSDLRRLDDCK 103 (185)
Q Consensus 54 ~~~~~~~~~~~~D~~g~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~ 103 (185)
.+.-+++.+.++||.|...... +. ... .-..|-+|+|.|++-..+-....
T Consensus 178 ~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa 233 (483)
T KOG0780|consen 178 RFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQA 233 (483)
T ss_pred HHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHH
Confidence 1223568999999999433221 11 111 23579999999998654433333
No 440
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.61 E-value=0.00055 Score=49.17 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+..+++.|+||+||||+++.+.+.
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~ 35 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK 35 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC
Confidence 33567999999999999999998654
No 441
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.61 E-value=6.2e-05 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++|+|+.|||||||++.+++...
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EEEEEccCCCccccceeeeccccc
Confidence 579999999999999999998744
No 442
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.59 E-value=0.00033 Score=54.49 Aligned_cols=97 Identities=25% Similarity=0.265 Sum_probs=56.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC------CCC-----ccccc-----------CcceEEEEE---------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING------EDT-----SVISP-----------TLGFNIKTV--------------- 55 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~-----~~~~~-----------t~~~~~~~~--------------- 55 (185)
...+-.|.++|..|+||||.+-.|.. .+. ..+.| ..++.....
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~ 176 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALE 176 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHH
Confidence 34567799999999999999776632 111 01111 111111110
Q ss_pred --EEcCeEEEEEEcCCchhhHHHH------HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHH
Q 029920 56 --TYQKYTLNIWDVGGQRTIRSYW------RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNL 109 (185)
Q Consensus 56 --~~~~~~~~~~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 109 (185)
....+.+.++||+|........ ..-.-++|-+++|+|+.-.+.-.+..+.|.+.
T Consensus 177 ~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~ 238 (451)
T COG0541 177 KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEA 238 (451)
T ss_pred HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhh
Confidence 1133689999999943322111 11234689999999998765555555555544
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.59 E-value=6.8e-05 Score=43.67 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|++.|++|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998865
No 444
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.59 E-value=7.3e-05 Score=42.31 Aligned_cols=20 Identities=35% Similarity=0.529 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 029920 18 RILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~ 37 (185)
..++.|+.|+||||++.++.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999998864
No 445
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.58 E-value=0.00076 Score=50.31 Aligned_cols=87 Identities=21% Similarity=0.157 Sum_probs=57.1
Q ss_pred cCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 82 EQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
.+.|-.++++.+.+|+ +...+..++... ...++..++++||+|+.+...... .+.+. .....+.+++.+|+
T Consensus 78 ~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~-~~~~~---~y~~~gy~v~~~s~ 149 (301)
T COG1162 78 ANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAV-KELLR---EYEDIGYPVLFVSA 149 (301)
T ss_pred cccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHH-HHHHH---HHHhCCeeEEEecC
Confidence 4577888888888865 333333333333 334788888899999987655543 11111 11116778999999
Q ss_pred cCCCCHHHHHHHHHHH
Q 029920 161 YTGEGLLEGFDWLVQD 176 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~ 176 (185)
+++.+++++.+.+...
T Consensus 150 ~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 150 KNGDGLEELAELLAGK 165 (301)
T ss_pred cCcccHHHHHHHhcCC
Confidence 9999999988876543
No 446
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.58 E-value=0.001 Score=44.29 Aligned_cols=101 Identities=17% Similarity=0.244 Sum_probs=57.9
Q ss_pred EEcCCCCChHHHHHHHhC----CCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 21 MVGLDNSGKTTIVLKING----EDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 21 v~G~~~~GKttli~~l~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
.-|..|+||||+.-.+.. .......-........+ .+.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~---~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~- 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANL---DYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP- 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCC---CCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh-
Confidence 346789999999655432 11110000000000000 17899999998543 333456889999999998863
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
.++......+..+.... ...++.+++|+++.
T Consensus 79 ~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~ 109 (139)
T cd02038 79 TSITDAYALIKKLAKQL--RVLNFRVVVNRAES 109 (139)
T ss_pred hHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence 34444444444443321 24678899999974
No 447
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.58 E-value=0.0012 Score=51.79 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=57.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccccC---c----c------------------eEEEEE---------------
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPT---L----G------------------FNIKTV--------------- 55 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t---~----~------------------~~~~~~--------------- 55 (185)
.-+|+++||.|+|||||+..|.|.-.+..... . + +-.+.+
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fG 692 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFG 692 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhh
Confidence 35899999999999999999987644322110 0 0 000001
Q ss_pred -EEcCeEEEEEEcCC-chhhHHHHHhhhcCCCEEEEEEeCC--CcccHHHHHHHHHH
Q 029920 56 -TYQKYTLNIWDVGG-QRTIRSYWRNYFEQTDGLVWVVDSS--DLRRLDDCKMELDN 108 (185)
Q Consensus 56 -~~~~~~~~~~D~~g-~~~~~~~~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~ 108 (185)
..+...+.+.|+.| +.........++...|++|+-=.-+ |.+|.+.+.+.+..
T Consensus 693 L~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 693 LASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred hhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 11236788889876 5556677788889999998843333 23455554444443
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00026 Score=53.26 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=21.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~ 37 (185)
..++.-++++|-.|+||||-|-.|+
T Consensus 136 ~~~p~Vil~vGVNG~GKTTTIaKLA 160 (340)
T COG0552 136 EKKPFVILFVGVNGVGKTTTIAKLA 160 (340)
T ss_pred CCCcEEEEEEecCCCchHhHHHHHH
Confidence 3457889999999999999987774
No 449
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.56 E-value=0.00072 Score=46.78 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|+|||||++.+.+...
T Consensus 30 ~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 30 SLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 579999999999999999998644
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.56 E-value=6.3e-05 Score=53.94 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTS 42 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~ 42 (185)
-|+|+|++|||||||+|.+-+-..+
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4799999999999999998765443
No 451
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00054 Score=50.81 Aligned_cols=110 Identities=18% Similarity=0.129 Sum_probs=61.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC----C--c----------------ccccCcceEEEEE--------------EEcC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED----T--S----------------VISPTLGFNIKTV--------------TYQK 59 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~----~--~----------------~~~~t~~~~~~~~--------------~~~~ 59 (185)
.-+++++|++|+||||++..+.... . . .+....++..... ...+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 3689999999999999988764321 1 0 0001112221111 0124
Q ss_pred eEEEEEEcCCchhhH----HHHHhhh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 60 YTLNIWDVGGQRTIR----SYWRNYF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
..+.++||||..... ......+ ...+-+++|+|++.. .+.+...+..+-. -.+-=+++||.|....
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~-----~~~~~~I~TKlDet~~ 226 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKD-----IHIDGIVFTKFDETAS 226 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCC-----CCCCEEEEEeecCCCC
Confidence 689999999954221 1112222 245778999998742 2233333333321 1335688999998664
No 452
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.54 E-value=5e-05 Score=52.02 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999755
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.53 E-value=0.0017 Score=44.09 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|+|||||++.+.+...
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 678999999999999999998754
No 454
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.53 E-value=7.2e-05 Score=52.25 Aligned_cols=24 Identities=33% Similarity=0.441 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-|+++|++|||||||+|.+.|--.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcC
Confidence 478999999999999999977443
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.52 E-value=7.1e-05 Score=56.86 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~ 41 (185)
++++||+||||||+++.+.|-..
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe~ 54 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLEE 54 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68899999999999999988544
No 456
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=97.51 E-value=0.0011 Score=45.24 Aligned_cols=51 Identities=31% Similarity=0.369 Sum_probs=30.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
-+.++|..|||||||++++...-. ..+.....++..... --.|++|-..++
T Consensus 4 Il~ivG~k~SGKTTLie~lv~~L~-----~~G~rVa~iKH~hh~-~~~D~~GkDs~r 54 (161)
T COG1763 4 ILGIVGYKNSGKTTLIEKLVRKLK-----ARGYRVATVKHAHHD-FDLDKPGKDTYR 54 (161)
T ss_pred EEEEEecCCCChhhHHHHHHHHHH-----hCCcEEEEEEecCCC-CCCCCCCCccch
Confidence 478999999999999999854311 112233334433333 335777765543
No 457
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.50 E-value=8e-05 Score=49.75 Aligned_cols=22 Identities=45% Similarity=0.622 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.|+|+|+.|||||||+..|.+.
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998654
No 458
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.00058 Score=53.70 Aligned_cols=127 Identities=18% Similarity=0.202 Sum_probs=73.7
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHH----hCCCCcccc-------------------------c-Ccc-eEEE
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKI----NGEDTSVIS-------------------------P-TLG-FNIK 53 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l----~~~~~~~~~-------------------------~-t~~-~~~~ 53 (185)
.-+.+.++.++++-|++||-.|+||||=+..+ ..+.++.+. + .++ +...
T Consensus 367 RdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lfekG 446 (587)
T KOG0781|consen 367 RDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELFEKG 446 (587)
T ss_pred HHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHHhhh
Confidence 44566677889999999999999999977664 333332110 0 000 0000
Q ss_pred E-----------E---EEcCeEEEEEEcCCchhhHHHH----Hhh--hcCCCEEEEEEeCC-CcccHHHHHHHHHHHHhc
Q 029920 54 T-----------V---TYQKYTLNIWDVGGQRTIRSYW----RNY--FEQTDGLVWVVDSS-DLRRLDDCKMELDNLLKE 112 (185)
Q Consensus 54 ~-----------~---~~~~~~~~~~D~~g~~~~~~~~----~~~--~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~ 112 (185)
. + +.+++.+.++||+|..--.... ..+ ....|.+++|-.+. ..++++.+... ...+..
T Consensus 447 Ygkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~f-n~al~~ 525 (587)
T KOG0781|consen 447 YGKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKF-NRALAD 525 (587)
T ss_pred cCCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHH-HHHHhc
Confidence 0 0 1245889999999943222111 111 35789999998765 34566665553 333333
Q ss_pred cccCCCeEEEEeecCCCCCC
Q 029920 113 ERLSGASLLILANKQDINGA 132 (185)
Q Consensus 113 ~~~~~~~~ivv~nK~D~~~~ 132 (185)
...+..-=-++++|+|..++
T Consensus 526 ~~~~r~id~~~ltk~dtv~d 545 (587)
T KOG0781|consen 526 HSTPRLIDGILLTKFDTVDD 545 (587)
T ss_pred CCCccccceEEEEeccchhh
Confidence 23222223478899997654
No 459
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.49 E-value=9.5e-05 Score=48.41 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999998765
No 460
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00012 Score=51.81 Aligned_cols=24 Identities=29% Similarity=0.588 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++||+|||||||++.+.+-..
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE~ 53 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLEE 53 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCcC
Confidence 578999999999999999877544
No 461
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.48 E-value=0.0013 Score=41.32 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=47.6
Q ss_pred EEEEcC-CCCChHHHHHHHhCCCCcccccCcceEEEEEEEc-CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 19 ILMVGL-DNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 19 i~v~G~-~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
|++.|. .|+||||+...+...--. .+...-.++.+ .+.+.++|+|+..... ....+..+|.++++.+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-----~~~~vl~~d~d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~- 73 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-----RGKRVLLIDLDPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSP- 73 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-----CCCcEEEEeCCCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCH-
Confidence 567774 589999987665322111 00011111111 1678999999875433 2366778999999998753
Q ss_pred ccHHHHHHHHH
Q 029920 97 RRLDDCKMELD 107 (185)
Q Consensus 97 ~s~~~~~~~~~ 107 (185)
.++......+.
T Consensus 74 ~s~~~~~~~~~ 84 (104)
T cd02042 74 LDLDGLEKLLE 84 (104)
T ss_pred HHHHHHHHHHH
Confidence 45555554443
No 462
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.46 E-value=0.00014 Score=49.58 Aligned_cols=52 Identities=27% Similarity=0.388 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
..+.++|.+|||||||++++...- ...+.....++.+...+.+ |++|....+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l-----~~~g~~V~~iK~~~~~~~~-d~~g~Ds~~ 53 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL-----SARGLRVAVIKHDHHDFDI-DTPGKDSYR 53 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-----HHcCCcEEEEEecCCcccc-cCccchHHH
Confidence 358999999999999999998531 1223334445554444443 777754433
No 463
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.46 E-value=9.9e-05 Score=54.00 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++++||.|||||||++.+.+
T Consensus 30 i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 30 ITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 368899999999999999977
No 464
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.45 E-value=0.002 Score=52.21 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=26.1
Q ss_pred HHHHHhhccCcee-EEEEEcCCCCChHHHHHHHhCC
Q 029920 5 SIIRKIKKKEKEM-RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 5 ~~~~~~~~~~~~~-~i~v~G~~~~GKttli~~l~~~ 39 (185)
+|+.........- -+++-||+||||||.++.|+..
T Consensus 33 ~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~e 68 (519)
T PF03215_consen 33 SWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKE 68 (519)
T ss_pred HHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHH
Confidence 6777765444333 4667899999999999998764
No 465
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.45 E-value=0.0022 Score=50.21 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=25.2
Q ss_pred HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+...........+.|.|++|+|||++++.+...
T Consensus 45 ~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~ 78 (394)
T PRK00411 45 ALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEE 78 (394)
T ss_pred HHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3434333445567899999999999999998753
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.45 E-value=0.00012 Score=48.00 Aligned_cols=27 Identities=37% Similarity=0.369 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcc
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSV 43 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~ 43 (185)
-.++++|++|+||||++..+...-...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 468999999999999999998765443
No 467
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.44 E-value=0.00012 Score=52.14 Aligned_cols=27 Identities=41% Similarity=0.394 Sum_probs=22.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
++...-|+|.|++|||||||++.|.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 445577999999999999999998753
No 468
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.43 E-value=0.00012 Score=50.56 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
+++|+|++|+|||||+|.+.|-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 689999999999999999987544
No 469
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.43 E-value=9.7e-05 Score=49.15 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+..++|+|.|.||+||||+..++..
T Consensus 4 ~r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 4 ERERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hhcCCCEEEeCCCCCCchhHHHHHHH
Confidence 35678999999999999999999874
No 470
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.42 E-value=0.00014 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.++++|++|||||||++.|.+..
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999997754
No 471
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.41 E-value=0.00013 Score=52.02 Aligned_cols=26 Identities=38% Similarity=0.423 Sum_probs=22.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+...|+|.|++|||||||++.|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 472
>PRK14530 adenylate kinase; Provisional
Probab=97.41 E-value=0.00013 Score=52.29 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.41 E-value=0.00014 Score=47.40 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 474
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.40 E-value=0.00015 Score=52.67 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-+.+++++|+|++|||||||+..+...
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 456789999999999999998887654
No 475
>PRK01889 GTPase RsgA; Reviewed
Probab=97.40 E-value=0.00013 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.515 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-+++++|.+|+|||||+|.|.+...
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~ 220 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEV 220 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhcc
Confidence 4789999999999999999987544
No 476
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.40 E-value=0.00013 Score=55.84 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEcCCCCChHHHHHHHhCCCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~ 41 (185)
++++||+||||||+++.+.|-..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 68999999999999999988554
No 477
>PRK03839 putative kinase; Provisional
Probab=97.40 E-value=0.00014 Score=50.56 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
+|+++|+|||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999998654
No 478
>PRK06217 hypothetical protein; Validated
Probab=97.38 E-value=0.00015 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+|+|+|.+||||||+..+|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999998754
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.38 E-value=0.00015 Score=48.27 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999875
No 480
>PRK08233 hypothetical protein; Provisional
Probab=97.38 E-value=0.00018 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+-|+|.|.+||||||+.++|...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999764
No 481
>PLN03025 replication factor C subunit; Provisional
Probab=97.37 E-value=0.006 Score=46.53 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=25.6
Q ss_pred HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++......+...+++.|++|+||||++..++..
T Consensus 24 ~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~ 57 (319)
T PLN03025 24 RLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 57 (319)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4444444555567999999999999999987654
No 482
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.37 E-value=0.00024 Score=50.69 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=22.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
+....-|+|+|++|||||||++.|...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 445566889999999999999999754
No 483
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.37 E-value=0.0014 Score=41.55 Aligned_cols=62 Identities=18% Similarity=0.142 Sum_probs=40.0
Q ss_pred EEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccC-CCeEEEEeec
Q 029920 61 TLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLS-GASLLILANK 126 (185)
Q Consensus 61 ~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-~~~~ivv~nK 126 (185)
.+.++|+|+..... ....+..+|.++++.+.+. .+.......+..+.+. ..+ ...+.+|+|+
T Consensus 44 D~IIiDtpp~~~~~--~~~~l~~aD~vlvvv~~~~-~s~~~~~~~~~~l~~~-~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLDEV--SLAALDQADRVFLVTQQDL-PSIRNAKRLLELLRVL-DYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcCHH--HHHHHHHcCeEEEEecCCh-HHHHHHHHHHHHHHHc-CCCCcCceEEEecC
Confidence 78999999875433 3446788999999997754 4555555554444332 222 3467777775
No 484
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.36 E-value=0.00018 Score=51.68 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 32 ~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 32 FVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCcC
Confidence 579999999999999999998743
No 485
>PRK06547 hypothetical protein; Provisional
Probab=97.35 E-value=0.00037 Score=48.25 Aligned_cols=27 Identities=26% Similarity=0.345 Sum_probs=23.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
......|+|.|++||||||+.+.|...
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 677888999999999999999999754
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.35 E-value=0.00015 Score=50.48 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++|+|++||||||+++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998664
No 487
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.35 E-value=0.00029 Score=53.68 Aligned_cols=93 Identities=22% Similarity=0.190 Sum_probs=63.7
Q ss_pred EcCCc-hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc
Q 029920 66 DVGGQ-RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL 144 (185)
Q Consensus 66 D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~ 144 (185)
+.||+ .+........+...|+++.|+|+.+|.+-.. ..+..+.. +.+.++|+||+|+.+....+.+...+..
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~--~~l~~~v~-----~k~~i~vlNK~DL~~~~~~~~W~~~~~~ 88 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRN--PELERIVK-----EKPKLLVLNKADLAPKEVTKKWKKYFKK 88 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccC--ccHHHHHc-----cCCcEEEEehhhcCCHHHHHHHHHHHHh
Confidence 44665 4455677778899999999999999765443 12233322 4556999999999887677777766654
Q ss_pred ccccCccceEEEeecccCCCCHHHHH
Q 029920 145 EAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
+. +...+.++++.+.+...+.
T Consensus 89 ~~-----~~~~~~v~~~~~~~~~~i~ 109 (322)
T COG1161 89 EE-----GIKPIFVSAKSRQGGKKIR 109 (322)
T ss_pred cC-----CCccEEEEeecccCccchH
Confidence 32 4456777777777665555
No 488
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.34 E-value=0.0015 Score=53.85 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
=+++++|++|||||||++.+.+-.
T Consensus 377 ~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 377 QRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999998865
No 489
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.33 E-value=0.00019 Score=45.44 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 029920 17 MRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~ 37 (185)
-.++++|++|||||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 357999999999999999976
No 490
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.33 E-value=0.00018 Score=49.98 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.|+++|++|||||||++.|.+..
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998754
No 491
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.005 Score=46.83 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.8
Q ss_pred cCceeE-EEEEcCCCCChHHHHHHHhCCCC
Q 029920 13 KEKEMR-ILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 13 ~~~~~~-i~v~G~~~~GKttli~~l~~~~~ 41 (185)
+...+. |.++|..|+|||||++.|.++..
T Consensus 184 ~~tdf~VIgvlG~QgsGKStllslLaans~ 213 (491)
T KOG4181|consen 184 KTTDFTVIGVLGGQGSGKSTLLSLLAANSL 213 (491)
T ss_pred cCCCeeEEEeecCCCccHHHHHHHHhccCh
Confidence 444454 78999999999999999988755
No 492
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.33 E-value=0.0002 Score=51.13 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|+|||||++.+.|...
T Consensus 29 ~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 29 FVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999998643
No 493
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.33 E-value=0.00017 Score=50.33 Aligned_cols=21 Identities=43% Similarity=0.377 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHh
Q 029920 17 MRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~ 37 (185)
..|+++|++||||||+++.+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999999997
No 494
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.32 E-value=0.0002 Score=51.31 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 31 ~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 31 MVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999998643
No 495
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.32 E-value=0.00015 Score=51.24 Aligned_cols=21 Identities=38% Similarity=0.414 Sum_probs=19.0
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|+|.|++|||||||++.|.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998764
No 496
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.32 E-value=0.00021 Score=51.98 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 28 ~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 28 ILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 497
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.32 E-value=0.00018 Score=50.93 Aligned_cols=20 Identities=25% Similarity=0.474 Sum_probs=17.5
Q ss_pred EEEEcCCCCChHHHHHHHhC
Q 029920 19 ILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~ 38 (185)
.+++||+|||||||++.|..
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 58999999999999988753
No 498
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.31 E-value=0.00028 Score=50.20 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 28 ~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 28 IIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998644
No 499
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.31 E-value=0.00022 Score=50.09 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 20 ~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 20 VLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998643
No 500
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.31 E-value=0.0002 Score=47.57 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.|+++|++|+|||+|++.++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999987654
Done!