Query 029920
Match_columns 185
No_of_seqs 127 out of 1835
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 08:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029920.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029920hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ksh_A ARF-like protein 2; sma 100.0 2.9E-36 9.8E-41 210.3 22.8 181 1-182 3-183 (186)
2 1fzq_A ADP-ribosylation factor 100.0 4.3E-36 1.5E-40 208.9 21.4 178 2-180 1-179 (181)
3 1zj6_A ADP-ribosylation factor 100.0 6E-35 2E-39 203.9 21.1 178 1-180 1-179 (187)
4 1upt_A ARL1, ADP-ribosylation 100.0 1.5E-34 5.3E-39 198.6 22.2 166 14-180 5-170 (171)
5 1r8s_A ADP-ribosylation factor 100.0 8.9E-35 3.1E-39 198.6 20.9 163 17-180 1-163 (164)
6 1moz_A ARL1, ADP-ribosylation 100.0 2.9E-35 9.9E-40 204.5 18.0 179 1-180 1-181 (183)
7 2h17_A ADP-ribosylation factor 100.0 3.3E-35 1.1E-39 204.3 18.2 166 10-176 15-180 (181)
8 2b6h_A ADP-ribosylation factor 100.0 8.2E-35 2.8E-39 204.2 20.2 166 13-179 26-191 (192)
9 2x77_A ADP-ribosylation factor 100.0 4E-35 1.4E-39 205.0 18.1 166 14-180 20-185 (189)
10 1zd9_A ADP-ribosylation factor 100.0 3E-34 1E-38 200.6 21.5 167 13-180 19-186 (188)
11 1m2o_B GTP-binding protein SAR 100.0 2.9E-34 9.8E-39 201.1 19.7 165 12-176 19-189 (190)
12 2h57_A ADP-ribosylation factor 100.0 3.7E-34 1.3E-38 200.4 19.5 168 11-179 16-187 (190)
13 4bas_A ADP-ribosylation factor 100.0 3.6E-34 1.2E-38 201.5 19.5 170 11-180 12-190 (199)
14 1f6b_A SAR1; gtpases, N-termin 100.0 3.1E-34 1E-38 202.2 18.1 173 5-177 14-197 (198)
15 4dkx_A RAS-related protein RAB 100.0 6.4E-34 2.2E-38 202.8 16.5 161 12-179 9-176 (216)
16 3o47_A ADP-ribosylation factor 100.0 2.4E-32 8.4E-37 206.0 19.2 166 14-180 163-328 (329)
17 3q72_A GTP-binding protein RAD 100.0 1.4E-31 4.8E-36 183.0 17.1 160 15-180 1-165 (166)
18 3lvq_E ARF-GAP with SH3 domain 100.0 3.2E-31 1.1E-35 210.2 20.8 168 13-181 319-486 (497)
19 2fg5_A RAB-22B, RAS-related pr 100.0 3.8E-31 1.3E-35 185.4 17.1 166 9-181 16-188 (192)
20 2nzj_A GTP-binding protein REM 100.0 9.9E-31 3.4E-35 180.2 18.8 161 14-180 2-170 (175)
21 1x3s_A RAS-related protein RAB 100.0 5.3E-31 1.8E-35 184.6 17.3 165 13-183 12-182 (195)
22 3ihw_A Centg3; RAS, centaurin, 100.0 1.1E-30 3.7E-35 182.0 18.5 162 10-181 14-182 (184)
23 2hup_A RAS-related protein RAB 100.0 8.7E-31 3E-35 184.9 18.3 161 13-180 26-194 (201)
24 3kkq_A RAS-related protein M-R 100.0 1.3E-30 4.3E-35 181.1 17.4 162 13-180 15-183 (183)
25 3bc1_A RAS-related protein RAB 100.0 1.8E-30 6E-35 181.7 17.7 164 12-181 7-187 (195)
26 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.4E-30 8E-35 178.7 18.0 164 12-180 3-175 (177)
27 3q85_A GTP-binding protein REM 100.0 1.7E-30 5.8E-35 178.1 17.2 159 16-180 2-168 (169)
28 1u8z_A RAS-related protein RAL 100.0 2.5E-30 8.5E-35 176.8 17.9 159 15-179 3-167 (168)
29 4dsu_A GTPase KRAS, isoform 2B 100.0 1.7E-30 5.8E-35 181.1 17.1 162 14-180 2-167 (189)
30 1ek0_A Protein (GTP-binding pr 100.0 2.2E-31 7.7E-36 182.4 12.4 158 15-179 2-169 (170)
31 2ew1_A RAS-related protein RAB 100.0 2.6E-30 9E-35 182.5 18.0 163 12-181 22-191 (201)
32 2a9k_A RAS-related protein RAL 100.0 3E-30 1E-34 179.5 17.8 165 11-181 13-183 (187)
33 2a5j_A RAS-related protein RAB 100.0 1.7E-30 5.8E-35 181.9 16.6 162 13-181 18-186 (191)
34 3t1o_A Gliding protein MGLA; G 100.0 4.5E-31 1.5E-35 185.2 13.6 162 12-181 10-194 (198)
35 2hxs_A RAB-26, RAS-related pro 100.0 1.4E-30 4.7E-35 180.0 15.8 162 13-180 3-174 (178)
36 1r2q_A RAS-related protein RAB 100.0 2.7E-30 9.2E-35 177.0 16.9 160 13-179 3-169 (170)
37 2fu5_C RAS-related protein RAB 100.0 8E-31 2.8E-35 182.1 14.4 161 13-180 5-172 (183)
38 3t5g_A GTP-binding protein RHE 100.0 1.7E-30 5.9E-35 180.1 15.8 163 13-181 3-171 (181)
39 3reg_A RHO-like small GTPase; 100.0 1.5E-30 5.1E-35 182.5 15.7 170 6-182 13-191 (194)
40 2g6b_A RAS-related protein RAB 100.0 4.6E-30 1.6E-34 177.7 17.9 163 12-181 6-176 (180)
41 3tkl_A RAS-related protein RAB 100.0 3.7E-30 1.3E-34 180.5 17.5 162 13-181 13-181 (196)
42 2iwr_A Centaurin gamma 1; ANK 100.0 5.2E-30 1.8E-34 177.3 17.9 158 13-180 4-170 (178)
43 2efe_B Small GTP-binding prote 100.0 8.9E-30 3.1E-34 176.4 19.1 164 10-180 6-176 (181)
44 1c1y_A RAS-related protein RAP 100.0 1.9E-30 6.6E-35 177.4 15.4 159 15-178 2-166 (167)
45 1z0f_A RAB14, member RAS oncog 100.0 1.1E-29 3.7E-34 175.5 19.2 160 13-179 12-178 (179)
46 2bme_A RAB4A, RAS-related prot 100.0 7.8E-30 2.7E-34 177.5 18.6 162 13-181 7-175 (186)
47 2bov_A RAla, RAS-related prote 100.0 9.9E-30 3.4E-34 179.7 19.3 164 11-180 9-178 (206)
48 2f7s_A C25KG, RAS-related prot 100.0 1.7E-30 5.9E-35 185.2 15.5 163 13-181 22-201 (217)
49 2fh5_B SR-beta, signal recogni 100.0 4.8E-30 1.6E-34 182.6 17.7 165 12-176 3-213 (214)
50 3clv_A RAB5 protein, putative; 100.0 6.7E-30 2.3E-34 180.0 18.4 160 13-181 4-206 (208)
51 3tw8_B RAS-related protein RAB 100.0 2E-30 6.9E-35 179.5 15.4 161 12-180 5-172 (181)
52 2p5s_A RAS and EF-hand domain 100.0 2.7E-30 9.1E-35 182.0 16.2 164 10-180 22-198 (199)
53 1g16_A RAS-related protein SEC 100.0 1.5E-30 5.2E-35 178.4 14.5 161 15-181 2-167 (170)
54 2gf9_A RAS-related protein RAB 100.0 2E-30 6.7E-35 181.2 15.0 162 13-181 19-187 (189)
55 3cbq_A GTP-binding protein REM 100.0 8.3E-30 2.9E-34 179.1 18.3 165 10-180 17-189 (195)
56 2fn4_A P23, RAS-related protei 100.0 4.7E-30 1.6E-34 177.6 16.7 163 13-181 6-174 (181)
57 2il1_A RAB12; G-protein, GDP, 100.0 9.1E-30 3.1E-34 178.4 18.3 162 13-180 23-191 (192)
58 1zbd_A Rabphilin-3A; G protein 100.0 1.4E-29 4.9E-34 178.6 19.3 161 13-180 5-172 (203)
59 2atv_A RERG, RAS-like estrogen 100.0 5E-30 1.7E-34 180.2 16.6 164 11-181 23-193 (196)
60 1z08_A RAS-related protein RAB 100.0 4.4E-30 1.5E-34 176.1 15.8 160 13-179 3-169 (170)
61 1z0j_A RAB-22, RAS-related pro 100.0 9.1E-30 3.1E-34 174.5 17.2 160 13-179 3-169 (170)
62 3dz8_A RAS-related protein RAB 100.0 1.8E-30 6.2E-35 181.8 13.9 162 13-181 20-188 (191)
63 1z06_A RAS-related protein RAB 100.0 6.9E-30 2.4E-34 178.4 16.7 161 13-179 17-188 (189)
64 3oes_A GTPase rhebl1; small GT 100.0 1.8E-30 6E-35 183.2 13.7 163 12-180 20-188 (201)
65 2oil_A CATX-8, RAS-related pro 100.0 7.6E-30 2.6E-34 178.7 16.7 162 13-181 22-190 (193)
66 1z2a_A RAS-related protein RAB 100.0 2.2E-30 7.6E-35 177.2 13.5 159 13-179 2-167 (168)
67 1kao_A RAP2A; GTP-binding prot 100.0 6.6E-30 2.2E-34 174.5 15.7 159 15-179 2-166 (167)
68 3q3j_B RHO-related GTP-binding 100.0 2.3E-30 8E-35 184.4 13.7 163 11-181 22-205 (214)
69 2bcg_Y Protein YP2, GTP-bindin 100.0 1.8E-29 6.2E-34 178.6 18.0 161 13-180 5-172 (206)
70 2gf0_A GTP-binding protein DI- 100.0 7.9E-30 2.7E-34 179.2 16.0 165 10-180 2-172 (199)
71 2o52_A RAS-related protein RAB 100.0 6.8E-30 2.3E-34 180.2 15.6 162 13-181 22-190 (200)
72 2g3y_A GTP-binding protein GEM 100.0 3.9E-29 1.4E-33 177.5 19.6 162 13-180 34-204 (211)
73 3cph_A RAS-related protein SEC 100.0 7.4E-30 2.5E-34 181.3 15.6 163 12-180 16-183 (213)
74 2y8e_A RAB-protein 6, GH09086P 100.0 1.1E-29 3.8E-34 175.4 16.0 161 12-179 10-177 (179)
75 2ce2_X GTPase HRAS; signaling 100.0 1.9E-29 6.5E-34 171.9 16.8 159 15-179 2-165 (166)
76 4djt_A GTP-binding nuclear pro 100.0 5.9E-30 2E-34 182.6 14.6 165 10-181 5-177 (218)
77 1ky3_A GTP-binding protein YPT 100.0 1.1E-29 3.9E-34 175.8 15.1 164 12-180 4-179 (182)
78 2yc2_C IFT27, small RAB-relate 100.0 4E-30 1.4E-34 181.8 13.0 161 14-180 18-193 (208)
79 1vg8_A RAS-related protein RAB 100.0 1.4E-29 4.9E-34 179.0 15.1 163 13-180 5-176 (207)
80 3con_A GTPase NRAS; structural 100.0 5.4E-29 1.8E-33 173.9 17.7 162 13-180 18-184 (190)
81 3cpj_B GTP-binding protein YPT 100.0 1.6E-29 5.6E-34 181.0 15.4 162 13-181 10-178 (223)
82 3c5c_A RAS-like protein 12; GD 100.0 1.5E-29 5.1E-34 176.7 14.8 163 10-179 15-186 (187)
83 2erx_A GTP-binding protein DI- 100.0 2.1E-29 7.2E-34 172.9 14.2 160 15-180 2-168 (172)
84 2atx_A Small GTP binding prote 100.0 4.3E-29 1.5E-33 175.0 15.9 158 13-178 15-192 (194)
85 3gj0_A GTP-binding nuclear pro 100.0 4.1E-30 1.4E-34 183.9 10.7 162 12-181 11-177 (221)
86 2q3h_A RAS homolog gene family 100.0 7E-29 2.4E-33 174.9 16.0 163 10-180 14-196 (201)
87 2gco_A H9, RHO-related GTP-bin 100.0 9.7E-29 3.3E-33 174.3 16.2 166 13-179 22-200 (201)
88 4gzl_A RAS-related C3 botulinu 100.0 3.1E-29 1.1E-33 177.3 13.7 167 9-177 23-203 (204)
89 1m7b_A RND3/RHOE small GTP-bin 100.0 6.5E-29 2.2E-33 172.8 14.6 160 13-179 4-183 (184)
90 3llu_A RAS-related GTP-binding 100.0 1.2E-29 4.2E-34 178.3 10.2 166 9-177 13-195 (196)
91 2fv8_A H6, RHO-related GTP-bin 100.0 1.4E-28 4.8E-33 174.3 15.7 166 13-180 22-201 (207)
92 2j1l_A RHO-related GTP-binding 100.0 1.8E-28 6E-33 174.7 16.1 166 13-180 31-210 (214)
93 2lkc_A Translation initiation 100.0 9.7E-29 3.3E-33 170.7 13.8 163 13-181 5-173 (178)
94 2j0v_A RAC-like GTP-binding pr 100.0 6E-29 2E-33 176.6 12.9 160 13-180 6-181 (212)
95 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.1E-28 7.3E-33 170.0 15.4 165 14-180 3-181 (186)
96 3bwd_D RAC-like GTP-binding pr 100.0 2.2E-29 7.4E-34 174.6 9.5 158 13-178 5-180 (182)
97 1gwn_A RHO-related GTP-binding 100.0 2.3E-28 7.7E-33 173.1 14.5 160 13-179 25-204 (205)
98 3l0i_B RAS-related protein RAB 100.0 2.5E-30 8.7E-35 182.2 3.6 162 14-180 31-197 (199)
99 2zej_A Dardarin, leucine-rich 100.0 7.6E-29 2.6E-33 172.6 10.6 161 16-179 2-178 (184)
100 2cjw_A GTP-binding protein GEM 100.0 1.8E-27 6.3E-32 166.7 17.6 160 14-179 4-172 (192)
101 1svi_A GTP-binding protein YSX 100.0 5.6E-28 1.9E-32 169.3 12.4 159 13-178 20-194 (195)
102 2qu8_A Putative nucleolar GTP- 100.0 3.1E-27 1.1E-31 169.7 16.3 164 14-181 27-207 (228)
103 3r7w_B Gtpase2, GTP-binding pr 100.0 1.8E-28 6.3E-33 182.5 9.3 161 18-182 1-177 (331)
104 2gj8_A MNME, tRNA modification 100.0 2.4E-27 8.1E-32 163.4 13.6 151 15-178 3-165 (172)
105 3pqc_A Probable GTP-binding pr 99.9 1.6E-27 5.5E-32 166.7 12.2 161 13-179 20-194 (195)
106 2wji_A Ferrous iron transport 99.9 1.7E-27 5.9E-32 163.0 11.1 148 15-178 2-164 (165)
107 3th5_A RAS-related C3 botulinu 99.9 1.2E-29 4.1E-34 179.3 0.0 168 7-177 21-203 (204)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 3.4E-27 1.2E-31 176.5 13.2 165 15-180 2-182 (307)
109 2dyk_A GTP-binding protein; GT 99.9 1E-26 3.5E-31 158.0 14.5 147 17-177 2-160 (161)
110 3iev_A GTP-binding protein ERA 99.9 2.2E-26 7.4E-31 172.2 17.0 165 12-183 6-186 (308)
111 1wf3_A GTP-binding protein; GT 99.9 3.8E-26 1.3E-30 170.1 16.4 160 14-183 5-177 (301)
112 2wkq_A NPH1-1, RAS-related C3 99.9 1.4E-25 4.7E-30 169.2 16.1 165 13-179 152-330 (332)
113 2cxx_A Probable GTP-binding pr 99.9 1.5E-26 5E-31 161.3 10.0 160 17-180 2-185 (190)
114 2f9l_A RAB11B, member RAS onco 99.9 6.2E-25 2.1E-29 154.6 17.7 160 14-180 3-169 (199)
115 4dhe_A Probable GTP-binding pr 99.9 2.7E-26 9.4E-31 164.0 10.8 163 13-180 26-212 (223)
116 3a1s_A Iron(II) transport prot 99.9 2E-26 6.7E-31 168.3 10.2 149 14-178 3-166 (258)
117 2wjg_A FEOB, ferrous iron tran 99.9 2.6E-26 9E-31 159.9 10.2 152 14-181 5-171 (188)
118 3iby_A Ferrous iron transport 99.9 6E-27 2E-31 170.8 7.0 148 17-176 2-164 (256)
119 3c5h_A Glucocorticoid receptor 99.9 3.5E-26 1.2E-30 166.9 10.1 162 12-178 15-254 (255)
120 3i8s_A Ferrous iron transport 99.9 7.1E-27 2.4E-31 172.2 6.0 154 15-180 2-170 (274)
121 2hjg_A GTP-binding protein ENG 99.9 1.4E-25 4.7E-30 175.2 12.3 159 15-179 174-349 (436)
122 3b1v_A Ferrous iron uptake tra 99.9 3E-26 1E-30 168.3 5.6 147 15-178 2-163 (272)
123 1oix_A RAS-related protein RAB 99.9 4.1E-24 1.4E-28 149.5 16.2 158 13-177 26-190 (191)
124 3gee_A MNME, tRNA modification 99.9 4.8E-25 1.6E-29 173.0 12.1 156 13-178 230-397 (476)
125 3k53_A Ferrous iron transport 99.9 2.8E-25 9.5E-30 163.5 9.1 151 15-180 2-167 (271)
126 1mky_A Probable GTP-binding pr 99.9 1.7E-24 5.9E-29 169.1 14.1 150 17-179 2-166 (439)
127 1lnz_A SPO0B-associated GTP-bi 99.9 8.1E-25 2.8E-29 165.2 10.9 159 17-182 159-333 (342)
128 3dpu_A RAB family protein; roc 99.9 1.5E-24 5.3E-29 173.2 12.8 157 13-180 38-209 (535)
129 1nrj_B SR-beta, signal recogni 99.9 6.2E-26 2.1E-30 161.7 4.1 123 13-136 9-139 (218)
130 1xzp_A Probable tRNA modificat 99.9 1.5E-24 5.1E-29 170.3 11.7 151 15-179 242-405 (482)
131 2e87_A Hypothetical protein PH 99.9 1.4E-23 4.8E-28 160.0 16.7 158 14-179 165-336 (357)
132 3sjy_A Translation initiation 99.9 2.8E-24 9.5E-29 166.3 12.8 164 12-178 4-191 (403)
133 4dcu_A GTP-binding protein ENG 99.9 3.6E-24 1.2E-28 168.0 13.2 161 14-180 193-370 (456)
134 1cip_A Protein (guanine nucleo 99.9 9E-24 3.1E-28 160.1 14.5 135 46-180 179-345 (353)
135 3qq5_A Small GTP-binding prote 99.9 7.5E-25 2.6E-29 169.4 8.7 154 13-179 31-196 (423)
136 3ohm_A Guanine nucleotide-bind 99.9 1.5E-23 5.2E-28 156.8 14.9 136 45-180 152-319 (327)
137 2hjg_A GTP-binding protein ENG 99.9 3.3E-24 1.1E-28 167.4 11.4 150 16-179 3-165 (436)
138 1mky_A Probable GTP-binding pr 99.9 2.1E-23 7.2E-28 162.9 14.3 159 15-179 179-355 (439)
139 1ega_A Protein (GTP-binding pr 99.9 1.3E-23 4.5E-28 156.6 11.4 158 15-182 7-178 (301)
140 1wb1_A Translation elongation 99.9 1.2E-23 4.3E-28 165.6 11.7 163 11-178 14-188 (482)
141 1s0u_A EIF-2-gamma, translatio 99.9 2.8E-22 9.7E-27 155.2 18.2 160 13-178 5-197 (408)
142 1zcb_A G alpha I/13; GTP-bindi 99.9 1.7E-22 5.9E-27 153.5 15.8 134 47-180 188-354 (362)
143 2xtp_A GTPase IMAP family memb 99.9 1.9E-22 6.6E-27 147.4 15.3 162 13-181 19-210 (260)
144 2qtf_A Protein HFLX, GTP-bindi 99.9 3.5E-22 1.2E-26 152.1 17.2 160 16-180 178-355 (364)
145 4dcu_A GTP-binding protein ENG 99.9 1.6E-23 5.4E-28 164.4 9.9 153 13-178 20-184 (456)
146 3tr5_A RF-3, peptide chain rel 99.9 1.4E-22 4.7E-27 160.9 14.9 116 13-133 10-150 (528)
147 3j2k_7 ERF3, eukaryotic polype 99.9 2.7E-22 9.1E-27 156.5 16.2 155 13-171 14-217 (439)
148 3geh_A MNME, tRNA modification 99.9 2.1E-23 7.2E-28 163.2 9.8 152 14-180 222-385 (462)
149 4fid_A G protein alpha subunit 99.9 9.2E-23 3.2E-27 153.1 12.9 134 46-179 147-328 (340)
150 2elf_A Protein translation elo 99.9 7.6E-23 2.6E-27 156.2 12.7 146 18-178 23-179 (370)
151 1kk1_A EIF2gamma; initiation o 99.9 2E-22 6.9E-27 156.2 14.6 161 12-178 6-199 (410)
152 3izy_P Translation initiation 99.9 1.4E-24 4.7E-29 171.9 1.6 160 14-178 2-167 (537)
153 3lxw_A GTPase IMAP family memb 99.9 2.8E-22 9.5E-27 145.6 13.4 166 13-180 18-209 (247)
154 3p26_A Elongation factor 1 alp 99.9 8.4E-23 2.9E-27 161.2 11.0 157 9-168 26-227 (483)
155 2ged_A SR-beta, signal recogni 99.9 4E-23 1.4E-27 144.4 7.9 130 13-143 45-182 (193)
156 3lxx_A GTPase IMAP family memb 99.9 8.7E-22 3E-26 142.3 14.4 168 10-179 23-214 (239)
157 3cb4_D GTP-binding protein LEP 99.9 4.6E-22 1.6E-26 159.6 13.6 158 14-179 2-182 (599)
158 2ywe_A GTP-binding protein LEP 99.9 6E-22 2.1E-26 158.7 14.2 159 13-179 3-184 (600)
159 2c78_A Elongation factor TU-A; 99.9 2.7E-22 9.3E-27 155.2 10.4 162 11-178 6-211 (405)
160 2xtz_A Guanine nucleotide-bind 99.9 2.2E-22 7.5E-27 152.4 9.5 123 58-180 181-346 (354)
161 1jny_A EF-1-alpha, elongation 99.9 7.9E-23 2.7E-27 159.5 7.1 156 13-170 3-204 (435)
162 1zo1_I IF2, translation initia 99.9 5.7E-24 2E-28 167.1 0.6 157 14-176 2-164 (501)
163 1d2e_A Elongation factor TU (E 99.9 3.6E-22 1.2E-26 154.1 9.9 158 15-178 2-194 (397)
164 1g7s_A Translation initiation 99.9 4E-22 1.4E-26 160.0 10.4 157 14-178 3-217 (594)
165 1zun_B Sulfate adenylate trans 99.9 2.6E-21 8.8E-26 150.9 14.5 153 13-169 21-214 (434)
166 3izq_1 HBS1P, elongation facto 99.9 2.4E-22 8.1E-27 162.1 8.9 153 13-169 164-362 (611)
167 2aka_B Dynamin-1; fusion prote 99.9 2.4E-21 8.3E-26 144.1 13.4 156 14-176 24-250 (299)
168 1azs_C GS-alpha; complex (lyas 99.9 5.6E-22 1.9E-26 151.9 8.7 134 47-180 204-386 (402)
169 3t5d_A Septin-7; GTP-binding p 99.9 1.2E-21 4.2E-26 144.3 9.3 158 13-177 5-202 (274)
170 1f60_A Elongation factor EEF1A 99.9 1.5E-21 5.2E-26 153.0 8.9 152 13-169 4-202 (458)
171 1r5b_A Eukaryotic peptide chai 99.8 1.6E-22 5.4E-27 158.9 2.8 154 13-170 40-243 (467)
172 1pui_A ENGB, probable GTP-bind 99.8 1.3E-20 4.4E-25 133.3 11.9 161 12-179 22-199 (210)
173 2h5e_A Peptide chain release f 99.8 1.8E-19 6.2E-24 143.2 17.3 116 13-133 10-150 (529)
174 3avx_A Elongation factor TS, e 99.8 1.6E-20 5.3E-25 157.9 11.6 160 13-178 293-485 (1289)
175 1dar_A EF-G, elongation factor 99.8 8.7E-20 3E-24 149.2 14.9 115 13-132 9-144 (691)
176 3mca_A HBS1, elongation factor 99.8 1.2E-22 4E-27 163.5 -2.5 160 13-177 174-395 (592)
177 2qag_A Septin-2, protein NEDD5 99.8 3.1E-21 1.1E-25 147.0 4.6 163 12-182 33-236 (361)
178 1jwy_B Dynamin A GTPase domain 99.8 8.7E-20 3E-24 136.7 12.2 161 14-180 22-263 (315)
179 2dy1_A Elongation factor G; tr 99.8 3.3E-19 1.1E-23 145.3 16.0 113 13-130 6-139 (665)
180 3def_A T7I23.11 protein; chlor 99.8 3E-19 1E-23 130.6 13.6 117 14-131 34-165 (262)
181 2j69_A Bacterial dynamin-like 99.8 9.8E-20 3.4E-24 149.0 11.6 162 13-179 66-325 (695)
182 1udx_A The GTP-binding protein 99.8 3.8E-19 1.3E-23 137.2 14.2 158 17-181 158-327 (416)
183 2xex_A Elongation factor G; GT 99.8 9.7E-19 3.3E-23 143.1 15.4 115 13-132 7-142 (693)
184 2rdo_7 EF-G, elongation factor 99.8 2.3E-18 7.9E-23 141.0 16.4 115 13-132 7-149 (704)
185 1h65_A Chloroplast outer envel 99.8 7.3E-18 2.5E-22 123.8 14.8 118 14-132 37-169 (270)
186 3t34_A Dynamin-related protein 99.8 1.1E-18 3.9E-23 133.0 9.9 152 15-174 33-256 (360)
187 2x2e_A Dynamin-1; nitration, h 99.8 1.7E-18 5.8E-23 131.7 10.2 156 13-175 28-254 (353)
188 3vqt_A RF-3, peptide chain rel 99.8 1.6E-17 5.4E-22 132.6 15.7 116 13-133 28-168 (548)
189 1wxq_A GTP-binding protein; st 99.8 5.7E-20 1.9E-24 141.4 0.6 79 17-96 1-114 (397)
190 3p32_A Probable GTPase RV1496/ 99.7 2.3E-18 7.7E-23 131.1 4.2 155 13-179 76-284 (355)
191 2qpt_A EH domain-containing pr 99.7 2.2E-17 7.4E-22 131.9 8.4 120 14-137 63-238 (550)
192 2qnr_A Septin-2, protein NEDD5 99.7 3.6E-18 1.2E-22 127.1 3.5 162 13-182 15-217 (301)
193 2www_A Methylmalonic aciduria 99.7 3.9E-17 1.3E-21 123.9 8.6 152 15-178 73-278 (349)
194 2wsm_A Hydrogenase expression/ 99.7 1.6E-17 5.5E-22 118.3 5.5 156 8-179 22-214 (221)
195 4a9a_A Ribosome-interacting GT 99.7 4.8E-16 1.6E-20 118.3 13.8 114 14-129 70-194 (376)
196 3zvr_A Dynamin-1; hydrolase, D 99.7 2.9E-16 9.8E-21 128.5 12.8 155 14-175 49-274 (772)
197 1n0u_A EF-2, elongation factor 99.7 1.3E-16 4.3E-21 133.1 10.3 114 12-130 15-163 (842)
198 3l82_B F-box only protein 4; T 99.7 1.9E-16 6.3E-21 110.1 7.9 111 68-181 110-225 (227)
199 2p67_A LAO/AO transport system 99.7 3.7E-17 1.3E-21 123.8 4.7 154 13-178 53-260 (341)
200 1yrb_A ATP(GTP)binding protein 99.7 4.4E-17 1.5E-21 118.9 4.7 119 60-179 109-257 (262)
201 3j25_A Tetracycline resistance 99.6 5.4E-17 1.9E-21 131.8 4.5 158 16-178 2-238 (638)
202 2qag_C Septin-7; cell cycle, c 99.6 1.6E-16 5.4E-21 122.7 5.9 156 14-177 29-225 (418)
203 1u0l_A Probable GTPase ENGC; p 99.6 4.3E-17 1.5E-21 121.4 2.1 133 31-174 32-168 (301)
204 4fn5_A EF-G 1, elongation fact 99.6 7.7E-15 2.6E-19 120.6 15.3 114 14-132 11-152 (709)
205 1jal_A YCHF protein; nucleotid 99.6 1.9E-14 6.4E-19 109.0 14.8 79 17-95 3-108 (363)
206 3l2o_B F-box only protein 4; s 99.6 3.9E-15 1.3E-19 108.3 8.3 112 67-181 194-310 (312)
207 2hf9_A Probable hydrogenase ni 99.6 5.1E-15 1.8E-19 105.6 7.9 156 8-179 30-224 (226)
208 2dby_A GTP-binding protein; GD 99.6 3.4E-14 1.2E-18 108.1 11.9 79 17-95 2-111 (368)
209 2qm8_A GTPase/ATPase; G protei 99.6 4.1E-15 1.4E-19 112.3 6.1 154 13-178 52-260 (337)
210 2ohf_A Protein OLA1, GTP-bindi 99.3 2.4E-12 8.1E-17 98.5 7.5 85 13-97 19-130 (396)
211 2yv5_A YJEQ protein; hydrolase 99.3 2.7E-12 9.2E-17 95.5 5.2 95 70-174 66-164 (302)
212 3ec1_A YQEH GTPase; atnos1, at 99.2 3E-13 1E-17 103.3 -1.8 121 15-141 161-298 (369)
213 2j37_W Signal recognition part 99.2 1.9E-11 6.4E-16 96.5 8.1 155 14-176 99-310 (504)
214 3h2y_A GTPase family protein; 99.1 1.6E-11 5.4E-16 93.7 3.3 123 15-142 159-298 (368)
215 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 3.2E-10 1.1E-14 86.9 8.9 83 13-95 17-127 (392)
216 2qag_B Septin-6, protein NEDD5 99.1 3.2E-10 1.1E-14 87.5 8.6 140 13-160 39-217 (427)
217 1tq4_A IIGP1, interferon-induc 99.0 3.5E-09 1.2E-13 81.7 11.7 159 15-180 68-254 (413)
218 1puj_A YLQF, conserved hypothe 99.0 3.2E-10 1.1E-14 83.5 5.6 102 64-178 3-105 (282)
219 3h2y_A GTPase family protein; 99.0 4.3E-10 1.5E-14 85.8 6.1 101 69-178 55-159 (368)
220 3ec1_A YQEH GTPase; atnos1, at 98.9 7E-10 2.4E-14 84.7 5.3 102 69-179 57-162 (369)
221 3sop_A Neuronal-specific septi 98.9 9.9E-10 3.4E-14 80.4 4.7 113 16-134 2-157 (270)
222 1puj_A YLQF, conserved hypothe 98.8 3E-09 1E-13 78.3 4.2 57 14-71 118-176 (282)
223 3cnl_A YLQF, putative uncharac 98.8 1.7E-09 5.8E-14 78.8 1.7 55 17-72 100-156 (262)
224 2v3c_C SRP54, signal recogniti 98.7 3.9E-09 1.3E-13 82.0 3.2 108 16-131 99-252 (432)
225 3dm5_A SRP54, signal recogniti 98.7 6E-08 2.1E-12 75.3 8.6 111 15-132 99-254 (443)
226 3szr_A Interferon-induced GTP- 98.6 3.8E-08 1.3E-12 79.7 6.3 27 16-42 45-71 (608)
227 1f5n_A Interferon-induced guan 98.6 4.9E-08 1.7E-12 78.4 6.4 59 13-71 35-102 (592)
228 3kl4_A SRP54, signal recogniti 98.5 1.6E-07 5.5E-12 72.8 5.4 109 16-131 97-252 (433)
229 3cnl_A YLQF, putative uncharac 98.5 3.5E-08 1.2E-12 71.8 1.2 93 67-175 4-97 (262)
230 1t9h_A YLOQ, probable GTPase E 98.2 2E-07 6.7E-12 69.3 0.9 85 79-172 82-170 (307)
231 1j8m_F SRP54, signal recogniti 98.2 4.6E-06 1.6E-10 61.7 8.2 66 58-131 179-253 (297)
232 3q5d_A Atlastin-1; G protein, 98.1 1.4E-05 4.7E-10 62.3 8.7 26 14-39 65-90 (447)
233 3e70_C DPA, signal recognition 98.1 1.7E-06 5.9E-11 64.9 2.9 25 14-38 127-151 (328)
234 1bif_A 6-phosphofructo-2-kinas 98.0 6.7E-07 2.3E-11 70.4 0.3 83 14-96 37-133 (469)
235 2xxa_A Signal recognition part 98.0 3.8E-06 1.3E-10 65.3 4.3 110 15-132 99-255 (433)
236 2rcn_A Probable GTPase ENGC; Y 98.0 1.5E-05 5.1E-10 60.3 6.9 83 80-172 127-212 (358)
237 1np6_A Molybdopterin-guanine d 97.8 5E-05 1.7E-09 51.7 6.2 24 16-39 6-29 (174)
238 1ye8_A Protein THEP1, hypothet 97.8 1.2E-05 4.1E-10 55.0 2.7 22 18-39 2-23 (178)
239 4eun_A Thermoresistant glucoki 97.6 2.3E-05 8E-10 54.4 2.8 34 6-39 19-52 (200)
240 1kgd_A CASK, peripheral plasma 97.6 2.1E-05 7.3E-10 53.7 2.4 22 18-39 7-28 (180)
241 1s96_A Guanylate kinase, GMP k 97.6 2.6E-05 8.9E-10 55.1 2.8 25 16-40 16-40 (219)
242 1lvg_A Guanylate kinase, GMP k 97.6 2.3E-05 7.8E-10 54.5 2.4 23 17-39 5-27 (198)
243 1zp6_A Hypothetical protein AT 97.6 3E-05 1E-09 53.3 3.0 24 16-39 9-32 (191)
244 2cdn_A Adenylate kinase; phosp 97.6 4.4E-05 1.5E-09 52.9 3.5 28 11-38 15-42 (201)
245 3tr0_A Guanylate kinase, GMP k 97.6 3E-05 1E-09 53.8 2.4 22 18-39 9-30 (205)
246 1znw_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 54.0 2.5 23 18-40 22-44 (207)
247 3a00_A Guanylate kinase, GMP k 97.6 3.2E-05 1.1E-09 53.1 2.4 21 19-39 4-24 (186)
248 3c8u_A Fructokinase; YP_612366 97.5 4.3E-05 1.5E-09 53.4 2.9 26 14-39 20-45 (208)
249 3tif_A Uncharacterized ABC tra 97.5 4.8E-05 1.7E-09 54.3 3.1 24 18-41 33-56 (235)
250 4gp7_A Metallophosphoesterase; 97.5 4.5E-05 1.5E-09 51.7 2.7 20 18-37 11-30 (171)
251 3te6_A Regulatory protein SIR3 97.5 0.00028 9.7E-09 52.5 7.2 34 5-38 34-67 (318)
252 1z6g_A Guanylate kinase; struc 97.5 4E-05 1.4E-09 54.1 2.5 24 17-40 24-47 (218)
253 2pcj_A ABC transporter, lipopr 97.5 5.9E-05 2E-09 53.5 3.0 24 18-41 32-55 (224)
254 2bbw_A Adenylate kinase 4, AK4 97.5 7.5E-05 2.6E-09 53.5 3.4 27 15-41 26-55 (246)
255 2onk_A Molybdate/tungstate ABC 97.4 7.1E-05 2.4E-09 53.6 3.0 24 18-41 26-49 (240)
256 1htw_A HI0065; nucleotide-bind 97.4 6E-05 2E-09 50.5 2.5 24 17-40 34-57 (158)
257 1b0u_A Histidine permease; ABC 97.4 7.5E-05 2.6E-09 54.2 3.0 24 18-41 34-57 (262)
258 2qt1_A Nicotinamide riboside k 97.4 7.9E-05 2.7E-09 51.9 3.0 26 14-39 19-44 (207)
259 1kag_A SKI, shikimate kinase I 97.4 6.2E-05 2.1E-09 50.7 2.4 23 17-39 5-27 (173)
260 2cbz_A Multidrug resistance-as 97.4 8.8E-05 3E-09 53.0 3.3 24 18-41 33-56 (237)
261 3gfo_A Cobalt import ATP-bindi 97.4 7.8E-05 2.7E-09 54.5 3.0 24 18-41 36-59 (275)
262 3asz_A Uridine kinase; cytidin 97.4 7.7E-05 2.6E-09 52.1 2.9 26 14-39 4-29 (211)
263 1sgw_A Putative ABC transporte 97.4 8.3E-05 2.8E-09 52.3 3.0 24 18-41 37-60 (214)
264 2ffh_A Protein (FFH); SRP54, s 97.4 5.4E-05 1.9E-09 58.6 2.2 67 58-131 179-251 (425)
265 3tau_A Guanylate kinase, GMP k 97.4 6.3E-05 2.2E-09 52.6 2.4 25 16-40 8-32 (208)
266 3ney_A 55 kDa erythrocyte memb 97.4 8.4E-05 2.9E-09 51.5 3.0 26 15-40 18-43 (197)
267 1g6h_A High-affinity branched- 97.4 8.3E-05 2.8E-09 53.8 3.1 24 18-41 35-58 (257)
268 2rcn_A Probable GTPase ENGC; Y 97.4 8.9E-05 3E-09 56.1 3.2 24 18-41 217-240 (358)
269 4dzz_A Plasmid partitioning pr 97.4 0.0008 2.7E-08 46.5 8.0 69 59-131 75-144 (206)
270 4g1u_C Hemin import ATP-bindin 97.4 8.6E-05 3E-09 54.0 3.0 24 18-41 39-62 (266)
271 2ff7_A Alpha-hemolysin translo 97.4 0.0001 3.4E-09 53.1 3.3 24 18-41 37-60 (247)
272 1mv5_A LMRA, multidrug resista 97.4 0.0001 3.5E-09 52.9 3.3 24 18-41 30-53 (243)
273 2olj_A Amino acid ABC transpor 97.4 9.2E-05 3.2E-09 53.8 3.0 24 18-41 52-75 (263)
274 2bdt_A BH3686; alpha-beta prot 97.4 7.5E-05 2.6E-09 51.2 2.5 21 18-38 4-24 (189)
275 3lw7_A Adenylate kinase relate 97.4 0.0001 3.5E-09 49.5 3.1 20 17-36 2-21 (179)
276 2pze_A Cystic fibrosis transme 97.4 0.00011 3.6E-09 52.3 3.3 24 18-41 36-59 (229)
277 3jvv_A Twitching mobility prot 97.4 0.00013 4.3E-09 55.3 3.8 33 5-38 113-145 (356)
278 1ji0_A ABC transporter; ATP bi 97.4 9.8E-05 3.4E-09 52.9 3.1 24 18-41 34-57 (240)
279 1ly1_A Polynucleotide kinase; 97.4 0.00011 3.9E-09 49.7 3.3 22 17-38 3-24 (181)
280 1vpl_A ABC transporter, ATP-bi 97.4 0.0001 3.5E-09 53.3 3.0 24 18-41 43-66 (256)
281 2j41_A Guanylate kinase; GMP, 97.4 0.0001 3.5E-09 51.1 2.9 25 16-40 6-30 (207)
282 2ghi_A Transport protein; mult 97.3 0.00012 4.1E-09 53.1 3.3 23 18-40 48-70 (260)
283 2qi9_C Vitamin B12 import ATP- 97.3 0.00012 4.2E-09 52.7 3.3 24 18-41 28-51 (249)
284 2ihy_A ABC transporter, ATP-bi 97.3 0.00012 4.1E-09 53.6 3.3 24 18-41 49-72 (279)
285 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00011 3.8E-09 52.9 3.0 22 18-39 31-52 (250)
286 3b85_A Phosphate starvation-in 97.3 8.4E-05 2.9E-09 52.1 2.3 22 18-39 24-45 (208)
287 3kb2_A SPBC2 prophage-derived 97.3 0.00012 4.2E-09 49.1 3.1 22 18-39 3-24 (173)
288 2qor_A Guanylate kinase; phosp 97.3 0.00011 3.7E-09 51.1 2.9 24 16-39 12-35 (204)
289 1aky_A Adenylate kinase; ATP:A 97.3 0.00013 4.5E-09 51.3 3.3 24 15-38 3-26 (220)
290 2ixe_A Antigen peptide transpo 97.3 0.00013 4.4E-09 53.2 3.3 24 18-41 47-70 (271)
291 3uie_A Adenylyl-sulfate kinase 97.3 0.00015 5.2E-09 50.2 3.5 27 13-39 22-48 (200)
292 1jjv_A Dephospho-COA kinase; P 97.3 0.00014 5E-09 50.5 3.4 22 17-38 3-24 (206)
293 2zu0_C Probable ATP-dependent 97.3 0.00013 4.5E-09 53.1 3.2 22 18-39 48-69 (267)
294 2i3b_A HCR-ntpase, human cance 97.3 8.9E-05 3E-09 51.1 2.2 22 18-39 3-24 (189)
295 1u0l_A Probable GTPase ENGC; p 97.3 0.00017 5.7E-09 53.4 3.8 26 17-42 170-195 (301)
296 1ex7_A Guanylate kinase; subst 97.3 0.00013 4.4E-09 50.2 2.9 21 19-39 4-24 (186)
297 2v9p_A Replication protein E1; 97.3 0.00011 3.7E-09 54.5 2.6 24 16-39 126-149 (305)
298 2nq2_C Hypothetical ABC transp 97.3 0.00013 4.4E-09 52.7 3.0 24 18-41 33-56 (253)
299 2yz2_A Putative ABC transporte 97.3 0.00013 4.6E-09 53.0 3.1 24 18-41 35-58 (266)
300 1knq_A Gluconate kinase; ALFA/ 97.3 0.00014 4.9E-09 49.1 3.0 23 16-38 8-30 (175)
301 3fb4_A Adenylate kinase; psych 97.3 0.00016 5.3E-09 50.7 3.2 22 17-38 1-22 (216)
302 1cke_A CK, MSSA, protein (cyti 97.3 0.00012 4.3E-09 51.5 2.7 23 16-38 5-27 (227)
303 2eyu_A Twitching motility prot 97.3 0.00012 3.9E-09 53.2 2.5 24 16-39 25-48 (261)
304 3tlx_A Adenylate kinase 2; str 97.3 0.00022 7.6E-09 51.1 4.0 25 14-38 27-51 (243)
305 2if2_A Dephospho-COA kinase; a 97.3 0.00013 4.4E-09 50.6 2.7 22 17-38 2-23 (204)
306 2pjz_A Hypothetical protein ST 97.3 0.00016 5.6E-09 52.4 3.3 23 18-40 32-54 (263)
307 2rhm_A Putative kinase; P-loop 97.3 0.0002 6.7E-09 49.1 3.5 23 16-38 5-27 (193)
308 3vaa_A Shikimate kinase, SK; s 97.3 0.00016 5.6E-09 50.0 3.1 23 16-38 25-47 (199)
309 3dl0_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 50.5 3.2 22 17-38 1-22 (216)
310 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00015 5E-09 55.0 3.0 24 18-41 32-55 (359)
311 4b4t_L 26S protease subunit RP 97.3 0.00051 1.7E-08 53.4 6.1 27 13-39 212-238 (437)
312 3cm0_A Adenylate kinase; ATP-b 97.3 0.0002 6.9E-09 48.8 3.5 23 16-38 4-26 (186)
313 1t9h_A YLOQ, probable GTPase E 97.3 5.1E-05 1.8E-09 56.3 0.5 25 17-41 174-198 (307)
314 3ec2_A DNA replication protein 97.3 0.00011 3.7E-09 50.0 2.0 24 16-39 38-61 (180)
315 3lnc_A Guanylate kinase, GMP k 97.2 9.2E-05 3.1E-09 52.5 1.7 23 17-39 28-51 (231)
316 1qhx_A CPT, protein (chloramph 97.2 0.00016 5.6E-09 48.9 2.9 22 17-38 4-25 (178)
317 1zd8_A GTP:AMP phosphotransfer 97.2 0.00018 6.1E-09 50.9 3.1 24 15-38 6-29 (227)
318 1y63_A LMAJ004144AAA protein; 97.2 0.00022 7.4E-09 48.8 3.4 26 14-39 8-33 (184)
319 3aez_A Pantothenate kinase; tr 97.2 0.00017 5.8E-09 53.7 3.0 27 13-39 87-113 (312)
320 1zak_A Adenylate kinase; ATP:A 97.2 0.00017 5.9E-09 50.7 2.9 24 15-38 4-27 (222)
321 4a74_A DNA repair and recombin 97.2 0.00014 4.8E-09 51.2 2.4 21 18-38 27-47 (231)
322 3sr0_A Adenylate kinase; phosp 97.2 0.0002 6.9E-09 50.0 3.2 22 17-38 1-22 (206)
323 1nks_A Adenylate kinase; therm 97.2 0.0002 6.7E-09 49.0 3.1 21 18-38 3-23 (194)
324 2jaq_A Deoxyguanosine kinase; 97.2 0.0002 6.9E-09 49.4 3.1 21 18-38 2-22 (205)
325 1z47_A CYSA, putative ABC-tran 97.2 0.00018 6.3E-09 54.4 3.0 24 18-41 43-66 (355)
326 4b4t_I 26S protease regulatory 97.2 0.00065 2.2E-08 52.5 6.1 27 13-39 213-239 (437)
327 1kht_A Adenylate kinase; phosp 97.2 0.00022 7.4E-09 48.7 3.1 22 17-38 4-25 (192)
328 2bbs_A Cystic fibrosis transme 97.2 0.00022 7.5E-09 52.5 3.3 24 18-41 66-89 (290)
329 2yyz_A Sugar ABC transporter, 97.2 0.00019 6.6E-09 54.4 3.0 24 18-41 31-54 (359)
330 3t61_A Gluconokinase; PSI-biol 97.2 0.0002 6.9E-09 49.6 2.9 24 16-39 18-41 (202)
331 3trf_A Shikimate kinase, SK; a 97.2 0.00023 7.9E-09 48.5 3.2 23 16-38 5-27 (185)
332 3tqc_A Pantothenate kinase; bi 97.2 0.00021 7E-09 53.4 3.1 26 13-38 89-114 (321)
333 3nh6_A ATP-binding cassette SU 97.2 0.00013 4.4E-09 54.1 2.0 24 18-41 82-105 (306)
334 3rlf_A Maltose/maltodextrin im 97.2 0.0002 6.7E-09 54.7 3.0 24 18-41 31-54 (381)
335 2ehv_A Hypothetical protein PH 97.2 0.0002 6.7E-09 51.1 2.9 20 18-37 32-51 (251)
336 2c95_A Adenylate kinase 1; tra 97.2 0.00025 8.5E-09 48.7 3.3 24 15-38 8-31 (196)
337 2it1_A 362AA long hypothetical 97.2 0.0002 6.9E-09 54.3 3.0 24 18-41 31-54 (362)
338 2jeo_A Uridine-cytidine kinase 97.2 0.00021 7.2E-09 51.2 3.0 25 14-38 23-47 (245)
339 1tev_A UMP-CMP kinase; ploop, 97.2 0.00025 8.6E-09 48.5 3.3 23 16-38 3-25 (196)
340 2yv5_A YJEQ protein; hydrolase 97.2 0.0004 1.4E-08 51.4 4.6 25 16-41 165-189 (302)
341 1e4v_A Adenylate kinase; trans 97.2 0.00024 8.2E-09 49.7 3.2 22 17-38 1-22 (214)
342 2x8a_A Nuclear valosin-contain 97.2 0.00017 5.8E-09 52.7 2.4 22 18-39 46-67 (274)
343 1ukz_A Uridylate kinase; trans 97.2 0.00029 1E-08 48.7 3.5 26 13-38 12-37 (203)
344 4b4t_K 26S protease regulatory 97.2 0.0005 1.7E-08 53.3 5.1 27 13-39 203-229 (428)
345 1odf_A YGR205W, hypothetical 3 97.2 0.00024 8E-09 52.4 3.1 26 13-38 28-53 (290)
346 2plr_A DTMP kinase, probable t 97.1 0.00028 9.6E-09 49.0 3.4 23 16-38 4-26 (213)
347 1g29_1 MALK, maltose transport 97.1 0.00023 7.7E-09 54.3 3.0 24 18-41 31-54 (372)
348 4b4t_M 26S protease regulatory 97.1 0.00043 1.5E-08 53.8 4.6 27 13-39 212-238 (434)
349 1uf9_A TT1252 protein; P-loop, 97.1 0.0003 1E-08 48.5 3.4 27 13-39 5-31 (203)
350 1v43_A Sugar-binding transport 97.1 0.00023 7.8E-09 54.2 3.0 24 18-41 39-62 (372)
351 1gvn_B Zeta; postsegregational 97.1 0.00028 9.7E-09 51.8 3.4 26 13-38 30-55 (287)
352 3end_A Light-independent proto 97.1 0.0022 7.5E-08 47.4 8.3 69 59-129 156-225 (307)
353 2f1r_A Molybdopterin-guanine d 97.1 9.1E-05 3.1E-09 50.2 0.7 52 18-74 4-55 (171)
354 3tui_C Methionine import ATP-b 97.1 0.00024 8.3E-09 53.9 3.0 24 18-41 56-79 (366)
355 2v54_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 48.5 3.4 24 16-39 4-27 (204)
356 1lw7_A Transcriptional regulat 97.1 0.00017 5.9E-09 54.8 2.0 26 16-41 170-195 (365)
357 2kjq_A DNAA-related protein; s 97.1 0.00018 6.3E-09 47.5 1.9 24 16-39 36-59 (149)
358 2v1u_A Cell division control p 97.1 0.0018 6.1E-08 49.0 7.7 26 14-39 42-67 (387)
359 2yvu_A Probable adenylyl-sulfa 97.1 0.00037 1.3E-08 47.6 3.5 26 13-38 10-35 (186)
360 3be4_A Adenylate kinase; malar 97.1 0.00031 1.1E-08 49.3 3.2 24 15-38 4-27 (217)
361 1via_A Shikimate kinase; struc 97.1 0.00026 8.8E-09 47.9 2.7 21 18-38 6-26 (175)
362 1nn5_A Similar to deoxythymidy 97.1 0.00035 1.2E-08 48.6 3.4 24 15-38 8-31 (215)
363 2wwf_A Thymidilate kinase, put 97.1 0.00036 1.2E-08 48.5 3.3 23 16-38 10-32 (212)
364 1rz3_A Hypothetical protein rb 97.1 0.00033 1.1E-08 48.6 3.0 26 13-38 19-44 (201)
365 3co5_A Putative two-component 97.1 0.0019 6.5E-08 42.1 6.6 26 14-39 25-50 (143)
366 3gd7_A Fusion complex of cysti 97.1 0.0003 1E-08 53.9 3.0 22 18-39 49-70 (390)
367 2p5t_B PEZT; postsegregational 97.1 0.00024 8.1E-09 51.2 2.3 26 13-38 29-54 (253)
368 1sq5_A Pantothenate kinase; P- 97.1 0.00032 1.1E-08 52.1 3.0 26 14-39 78-103 (308)
369 3d31_A Sulfate/molybdate ABC t 97.1 0.00018 6.3E-09 54.3 1.8 24 18-41 28-51 (348)
370 4e22_A Cytidylate kinase; P-lo 97.1 0.0004 1.4E-08 50.0 3.5 22 16-37 27-48 (252)
371 1jbk_A CLPB protein; beta barr 97.1 0.00067 2.3E-08 45.9 4.5 26 14-39 41-66 (195)
372 1ixz_A ATP-dependent metallopr 97.0 0.00026 8.8E-09 50.9 2.4 22 18-39 51-72 (254)
373 3iij_A Coilin-interacting nucl 97.0 0.00036 1.2E-08 47.3 3.0 23 16-38 11-33 (180)
374 1ak2_A Adenylate kinase isoenz 97.0 0.00041 1.4E-08 49.2 3.4 26 13-38 13-38 (233)
375 2bwj_A Adenylate kinase 5; pho 97.0 0.00038 1.3E-08 47.9 3.1 23 16-38 12-34 (199)
376 1xjc_A MOBB protein homolog; s 97.0 0.00042 1.4E-08 46.8 3.2 23 16-38 4-26 (169)
377 2pt5_A Shikimate kinase, SK; a 97.0 0.0004 1.4E-08 46.5 3.1 21 18-38 2-22 (168)
378 4b4t_J 26S protease regulatory 97.0 0.00043 1.5E-08 53.1 3.6 27 13-39 179-205 (405)
379 2pt7_A CAG-ALFA; ATPase, prote 97.0 0.00032 1.1E-08 52.6 2.8 24 18-41 173-196 (330)
380 2vli_A Antibiotic resistance p 97.0 0.00028 9.5E-09 47.9 2.3 24 15-38 4-27 (183)
381 1qf9_A UMP/CMP kinase, protein 97.0 0.00047 1.6E-08 47.1 3.5 23 16-38 6-28 (194)
382 2xb4_A Adenylate kinase; ATP-b 97.0 0.0004 1.4E-08 49.0 3.1 21 18-38 2-22 (223)
383 3bos_A Putative DNA replicatio 97.0 0.00069 2.4E-08 47.8 4.4 31 8-38 44-74 (242)
384 1rj9_A FTSY, signal recognitio 97.0 0.00029 1E-08 52.2 2.5 23 16-38 102-124 (304)
385 2gza_A Type IV secretion syste 97.0 0.00035 1.2E-08 53.0 2.9 25 17-41 176-200 (361)
386 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.00046 1.6E-08 49.9 3.4 23 16-38 4-26 (260)
387 1m7g_A Adenylylsulfate kinase; 97.0 0.00085 2.9E-08 46.8 4.5 30 9-38 18-47 (211)
388 2ze6_A Isopentenyl transferase 97.0 0.0004 1.4E-08 50.0 2.9 21 18-38 3-23 (253)
389 1oxx_K GLCV, glucose, ABC tran 97.0 0.00018 6.2E-09 54.4 1.1 24 18-41 33-56 (353)
390 2pbr_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 47.0 3.2 21 18-38 2-22 (195)
391 1uj2_A Uridine-cytidine kinase 97.0 0.00052 1.8E-08 49.3 3.4 26 13-38 19-44 (252)
392 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.01 3.5E-07 44.2 10.4 24 16-39 45-68 (322)
393 3b9q_A Chloroplast SRP recepto 96.9 0.00036 1.2E-08 51.7 2.4 22 17-38 101-122 (302)
394 2z0h_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 47.0 3.2 22 18-39 2-23 (197)
395 1vht_A Dephospho-COA kinase; s 96.9 0.00059 2E-08 47.8 3.4 23 16-38 4-26 (218)
396 1in4_A RUVB, holliday junction 96.9 0.00036 1.2E-08 52.4 2.4 23 17-39 52-74 (334)
397 2ewv_A Twitching motility prot 96.9 0.0004 1.4E-08 52.9 2.6 23 17-39 137-159 (372)
398 2f6r_A COA synthase, bifunctio 96.9 0.00059 2E-08 49.9 3.4 24 14-37 73-96 (281)
399 3umf_A Adenylate kinase; rossm 96.9 0.00068 2.3E-08 47.7 3.5 21 18-38 31-51 (217)
400 2iyv_A Shikimate kinase, SK; t 96.9 0.00053 1.8E-08 46.6 2.9 21 18-38 4-24 (184)
401 1iy2_A ATP-dependent metallopr 96.9 0.0004 1.4E-08 50.6 2.4 22 18-39 75-96 (278)
402 1gtv_A TMK, thymidylate kinase 96.9 0.00019 6.6E-09 50.0 0.7 21 18-38 2-22 (214)
403 3r20_A Cytidylate kinase; stru 96.9 0.00059 2E-08 48.6 3.2 24 15-38 8-31 (233)
404 1e6c_A Shikimate kinase; phosp 96.9 0.00056 1.9E-08 45.9 2.9 21 18-38 4-24 (173)
405 2p65_A Hypothetical protein PF 96.9 0.00074 2.5E-08 45.6 3.5 25 14-38 41-65 (187)
406 2oap_1 GSPE-2, type II secreti 96.9 0.0005 1.7E-08 54.6 2.9 23 18-40 262-284 (511)
407 2npi_A Protein CLP1; CLP1-PCF1 96.9 0.0004 1.4E-08 54.4 2.2 26 15-40 137-162 (460)
408 1zuh_A Shikimate kinase; alpha 96.9 0.0007 2.4E-08 45.3 3.1 23 16-38 7-29 (168)
409 3vfd_A Spastin; ATPase, microt 96.9 0.0034 1.2E-07 48.0 7.3 24 16-39 148-171 (389)
410 2vp4_A Deoxynucleoside kinase; 96.8 0.0006 2E-08 48.3 2.9 26 14-39 18-43 (230)
411 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.0005 1.7E-08 48.3 2.5 21 18-38 25-45 (235)
412 2grj_A Dephospho-COA kinase; T 96.8 0.0009 3.1E-08 46.2 3.6 27 13-39 9-35 (192)
413 2pez_A Bifunctional 3'-phospho 96.8 0.00081 2.8E-08 45.5 3.3 23 16-38 5-27 (179)
414 1p9r_A General secretion pathw 96.8 0.00051 1.7E-08 53.2 2.4 22 18-39 169-190 (418)
415 2vhj_A Ntpase P4, P4; non- hyd 96.8 0.0024 8.3E-08 47.6 5.9 21 19-39 126-146 (331)
416 1lv7_A FTSH; alpha/beta domain 96.8 0.00069 2.4E-08 48.7 2.9 24 16-39 45-68 (257)
417 2obl_A ESCN; ATPase, hydrolase 96.8 0.00063 2.2E-08 51.4 2.6 25 17-41 72-96 (347)
418 3kta_A Chromosome segregation 96.8 0.00078 2.7E-08 45.7 2.9 20 18-37 28-47 (182)
419 2w58_A DNAI, primosome compone 96.8 0.0013 4.5E-08 45.4 4.1 22 17-38 55-76 (202)
420 1cr0_A DNA primase/helicase; R 96.8 0.0006 2.1E-08 50.1 2.4 21 18-38 37-57 (296)
421 4b4t_H 26S protease regulatory 96.8 0.0017 5.9E-08 50.6 5.0 27 13-39 240-266 (467)
422 3nwj_A ATSK2; P loop, shikimat 96.7 0.0006 2.1E-08 49.1 2.2 22 17-38 49-70 (250)
423 2og2_A Putative signal recogni 96.7 0.00063 2.1E-08 51.6 2.4 22 17-38 158-179 (359)
424 3n70_A Transport activator; si 96.7 0.0014 4.7E-08 42.9 3.8 26 14-39 22-47 (145)
425 1yqt_A RNAse L inhibitor; ATP- 96.7 0.00086 3E-08 53.6 3.2 24 18-41 49-72 (538)
426 3t15_A Ribulose bisphosphate c 96.7 0.001 3.4E-08 49.0 3.3 26 14-39 34-59 (293)
427 2chg_A Replication factor C sm 96.7 0.0014 5E-08 45.3 4.0 21 18-38 40-60 (226)
428 3b60_A Lipid A export ATP-bind 96.7 0.00095 3.3E-08 53.9 3.2 24 18-41 371-394 (582)
429 3gmt_A Adenylate kinase; ssgci 96.7 0.0011 3.7E-08 47.1 3.1 25 14-38 6-30 (230)
430 4eaq_A DTMP kinase, thymidylat 96.7 0.0012 4.2E-08 46.7 3.5 25 15-39 25-49 (229)
431 3ozx_A RNAse L inhibitor; ATP 96.7 0.0013 4.4E-08 52.6 3.8 24 18-41 27-50 (538)
432 2ga8_A Hypothetical 39.9 kDa p 96.7 0.0017 5.7E-08 49.1 4.2 27 12-38 20-46 (359)
433 2yhs_A FTSY, cell division pro 96.7 0.00076 2.6E-08 53.1 2.4 22 17-38 294-315 (503)
434 2cvh_A DNA repair and recombin 96.7 0.00083 2.8E-08 46.8 2.5 21 18-38 22-42 (220)
435 2dpy_A FLII, flagellum-specifi 96.7 0.00083 2.9E-08 52.3 2.6 26 16-41 157-182 (438)
436 1n0w_A DNA repair protein RAD5 96.7 0.00082 2.8E-08 47.6 2.4 22 18-39 26-47 (243)
437 1fnn_A CDC6P, cell division co 96.7 0.0015 5.1E-08 49.5 4.0 22 18-39 46-67 (389)
438 1ltq_A Polynucleotide kinase; 96.6 0.0012 4.2E-08 48.5 3.3 22 17-38 3-24 (301)
439 1nij_A Hypothetical protein YJ 96.6 0.001 3.5E-08 49.6 2.8 25 16-40 4-28 (318)
440 1svm_A Large T antigen; AAA+ f 96.6 0.00089 3E-08 51.1 2.5 25 14-38 167-191 (377)
441 3euj_A Chromosome partition pr 96.6 0.00087 3E-08 52.7 2.4 22 17-38 30-51 (483)
442 3b5x_A Lipid A export ATP-bind 96.6 0.0014 4.9E-08 52.8 3.8 24 18-41 371-394 (582)
443 1q3t_A Cytidylate kinase; nucl 96.6 0.0014 5E-08 46.5 3.4 26 13-38 13-38 (236)
444 3j16_B RLI1P; ribosome recycli 96.6 0.0014 4.8E-08 53.1 3.7 24 18-41 105-128 (608)
445 2yl4_A ATP-binding cassette SU 96.6 0.00099 3.4E-08 53.9 2.8 24 18-41 372-395 (595)
446 1sxj_E Activator 1 40 kDa subu 96.6 0.00099 3.4E-08 50.1 2.6 22 17-38 37-58 (354)
447 3qf4_B Uncharacterized ABC tra 96.6 0.0011 3.7E-08 53.7 2.9 24 18-41 383-406 (598)
448 4ido_A Atlastin-1; GTPase, GTP 96.6 0.0032 1.1E-07 49.0 5.4 24 14-37 65-88 (457)
449 1f2t_A RAD50 ABC-ATPase; DNA d 96.6 0.0014 4.6E-08 43.3 2.9 19 19-37 26-44 (149)
450 1sxj_C Activator 1 40 kDa subu 96.6 0.0015 5.1E-08 49.0 3.5 23 17-39 47-69 (340)
451 2qz4_A Paraplegin; AAA+, SPG7, 96.6 0.0016 5.3E-08 46.8 3.4 24 15-38 38-61 (262)
452 3b9p_A CG5977-PA, isoform A; A 96.6 0.0012 4.2E-08 48.3 2.9 25 15-39 53-77 (297)
453 3h4m_A Proteasome-activating n 96.6 0.0015 5.2E-08 47.5 3.3 26 14-39 49-74 (285)
454 3u61_B DNA polymerase accessor 96.6 0.044 1.5E-06 40.5 11.4 26 14-39 45-71 (324)
455 2qby_B CDC6 homolog 3, cell di 96.5 0.0026 9.1E-08 48.2 4.7 33 7-39 36-68 (384)
456 3pfi_A Holliday junction ATP-d 96.5 0.019 6.4E-07 42.8 9.2 26 14-39 53-78 (338)
457 1d2n_A N-ethylmaleimide-sensit 96.5 0.0029 1E-07 45.8 4.7 27 13-39 61-87 (272)
458 3bk7_A ABC transporter ATP-bin 96.5 0.002 6.8E-08 52.3 4.0 24 18-41 119-142 (607)
459 1njg_A DNA polymerase III subu 96.5 0.0027 9.2E-08 44.5 4.3 22 17-38 46-67 (250)
460 3ozx_A RNAse L inhibitor; ATP 96.5 0.0021 7.3E-08 51.3 4.1 24 18-41 296-319 (538)
461 1tue_A Replication protein E1; 96.5 0.0023 7.9E-08 44.5 3.7 21 18-38 60-80 (212)
462 4a82_A Cystic fibrosis transme 96.5 0.00095 3.2E-08 53.9 2.0 24 18-41 369-392 (578)
463 3cf0_A Transitional endoplasmi 96.5 0.0014 4.9E-08 48.3 2.8 26 14-39 47-72 (301)
464 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0022 7.6E-08 51.3 4.1 24 18-41 314-337 (538)
465 1p5z_B DCK, deoxycytidine kina 96.5 0.0012 4.1E-08 47.7 2.2 27 13-39 21-47 (263)
466 3syl_A Protein CBBX; photosynt 96.4 0.002 6.8E-08 47.4 3.4 25 14-38 65-89 (309)
467 3qf4_A ABC transporter, ATP-bi 96.4 0.0013 4.3E-08 53.2 2.5 24 18-41 371-394 (587)
468 1nlf_A Regulatory protein REPA 96.4 0.0014 4.9E-08 47.7 2.4 21 18-38 32-52 (279)
469 3foz_A TRNA delta(2)-isopenten 96.4 0.0024 8.2E-08 47.3 3.5 26 14-39 8-33 (316)
470 3bk7_A ABC transporter ATP-bin 96.4 0.0026 9E-08 51.6 4.1 24 18-41 384-407 (607)
471 1l8q_A Chromosomal replication 96.4 0.0015 5.3E-08 48.5 2.4 24 16-39 37-60 (324)
472 1ofh_A ATP-dependent HSL prote 96.4 0.0023 7.8E-08 47.0 3.2 24 15-38 49-72 (310)
473 1sxj_D Activator 1 41 kDa subu 96.3 0.0026 9E-08 47.6 3.6 23 17-39 59-81 (353)
474 3ake_A Cytidylate kinase; CMP 96.3 0.0025 8.5E-08 44.0 3.1 21 18-38 4-24 (208)
475 2qby_A CDC6 homolog 1, cell di 96.3 0.0014 4.7E-08 49.6 2.0 26 14-39 43-68 (386)
476 3j16_B RLI1P; ribosome recycli 96.3 0.002 7E-08 52.2 3.0 24 19-42 381-404 (608)
477 3zvl_A Bifunctional polynucleo 96.3 0.0027 9.2E-08 49.1 3.5 25 15-39 257-281 (416)
478 1a7j_A Phosphoribulokinase; tr 96.3 0.0014 4.9E-08 48.2 1.8 24 15-38 4-27 (290)
479 1pzn_A RAD51, DNA repair and r 96.3 0.0018 6.1E-08 48.9 2.4 22 18-39 133-154 (349)
480 3cf2_A TER ATPase, transitiona 96.3 0.0048 1.6E-07 51.6 5.1 26 14-39 236-261 (806)
481 2px0_A Flagellar biosynthesis 96.3 0.0021 7.2E-08 47.4 2.7 22 16-37 105-126 (296)
482 3qf7_A RAD50; ABC-ATPase, ATPa 96.3 0.0023 7.8E-08 48.6 2.9 19 19-37 26-44 (365)
483 2dr3_A UPF0273 protein PH0284; 96.3 0.0024 8.2E-08 45.3 2.9 20 18-37 25-44 (247)
484 3eie_A Vacuolar protein sortin 96.3 0.0029 9.9E-08 47.1 3.4 24 16-39 51-74 (322)
485 1hqc_A RUVB; extended AAA-ATPa 96.3 0.021 7.3E-07 42.1 8.1 24 15-38 37-60 (324)
486 2ocp_A DGK, deoxyguanosine kin 96.2 0.0033 1.1E-07 44.7 3.3 24 16-39 2-25 (241)
487 2qmh_A HPR kinase/phosphorylas 96.2 0.0031 1.1E-07 43.6 3.1 25 17-41 35-59 (205)
488 4fcw_A Chaperone protein CLPB; 96.2 0.0034 1.2E-07 46.2 3.5 23 17-39 48-70 (311)
489 3crm_A TRNA delta(2)-isopenten 96.2 0.0027 9.2E-08 47.3 2.9 23 17-39 6-28 (323)
490 3uk6_A RUVB-like 2; hexameric 96.2 0.0048 1.6E-07 46.5 4.2 22 17-38 71-92 (368)
491 3v9p_A DTMP kinase, thymidylat 96.1 0.003 1E-07 44.7 2.8 24 15-38 24-47 (227)
492 3d3q_A TRNA delta(2)-isopenten 96.1 0.0031 1E-07 47.4 2.9 22 17-38 8-29 (340)
493 1vma_A Cell division protein F 96.1 0.0034 1.2E-07 46.5 3.1 22 17-38 105-126 (306)
494 3pvs_A Replication-associated 96.1 0.0044 1.5E-07 48.4 3.9 27 13-39 47-73 (447)
495 3pxg_A Negative regulator of g 96.1 0.0045 1.5E-07 48.6 3.9 26 14-39 199-224 (468)
496 3cr8_A Sulfate adenylyltranfer 96.1 0.0027 9.3E-08 50.9 2.7 25 15-39 368-392 (552)
497 2h92_A Cytidylate kinase; ross 96.1 0.0032 1.1E-07 43.9 2.7 23 16-38 3-25 (219)
498 1u0j_A DNA replication protein 96.1 0.0054 1.9E-07 44.4 3.9 34 5-38 91-126 (267)
499 4f4c_A Multidrug resistance pr 96.0 0.0024 8.2E-08 56.3 2.3 23 18-40 1107-1129(1321)
500 2dhr_A FTSH; AAA+ protein, hex 96.0 0.0028 9.4E-08 50.2 2.4 22 18-39 66-87 (499)
No 1
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=100.00 E-value=2.9e-36 Score=210.30 Aligned_cols=181 Identities=62% Similarity=1.129 Sum_probs=146.9
Q ss_pred CChHHHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920 1 MGLLSIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY 80 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 80 (185)
||+.+++++.+...+.++|+++|++|+|||||++++.+.....+.+|.+.....+.+++..+.+|||||++.+...+..+
T Consensus 3 mg~~~~~~~~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 82 (186)
T 1ksh_A 3 MGLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNY 82 (186)
T ss_dssp --------------CCEEEEEECSTTSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGG
T ss_pred cchhHHHHhhcccCCeeEEEEECCCCCCHHHHHHHHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 67556566665447889999999999999999999998887678889998888888899999999999999999999999
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|++++.+++....++..++......+.|+++|+||+|+.+....+++.+.+....... ..++++++||
T Consensus 83 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 161 (186)
T 1ksh_A 83 FESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRS-HHWRIQGCSA 161 (186)
T ss_dssp CTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccC-CceEEEEeeC
Confidence 999999999999999999999999998888765556899999999999987767777776665433333 6779999999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcc
Q 029920 161 YTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
++|.|++++++++.+.+.++.+
T Consensus 162 ~~~~gi~~l~~~l~~~i~~~~~ 183 (186)
T 1ksh_A 162 VTGEDLLPGIDWLLDDISSRVF 183 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHTC--
T ss_pred CCCCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999987754
No 2
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=100.00 E-value=4.3e-36 Score=208.88 Aligned_cols=178 Identities=51% Similarity=0.930 Sum_probs=151.0
Q ss_pred ChHHHHHHhhcc-CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920 2 GLLSIIRKIKKK-EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY 80 (185)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 80 (185)
|+.+++++.... ...++|+++|++|+|||||++++.+..+..+.+|.++....+.+++..+.+|||||++.+...+..+
T Consensus 1 ~~~~~~~~~~~~~~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 80 (181)
T 1fzq_A 1 GLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSY 80 (181)
T ss_dssp CCCCHHHHCSSCCSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHH
T ss_pred CHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 344566666543 6789999999999999999999999988888899998888888899999999999999999999999
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++||
T Consensus 81 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa 159 (181)
T 1fzq_A 81 FENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRD-RVWQIQSCSA 159 (181)
T ss_dssp HTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCT
T ss_pred hCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccC-CceEEEEccC
Confidence 999999999999999999999999988887765556899999999999987766667766665433333 5678999999
Q ss_pred cCCCCHHHHHHHHHHHHhhh
Q 029920 161 YTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~ 180 (185)
++|.|++++|++|.+.+.++
T Consensus 160 ~~g~gi~~l~~~l~~~~~~~ 179 (181)
T 1fzq_A 160 LTGEGVQDGMNWVCKNVNAK 179 (181)
T ss_dssp TTCTTHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999887654
No 3
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-35 Score=203.90 Aligned_cols=178 Identities=38% Similarity=0.729 Sum_probs=146.1
Q ss_pred CChH-HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHh
Q 029920 1 MGLL-SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
||.. +.+...+ ..+.++|+++|++|+|||||+++|.++.+..+.+|.++....+.+++..+.+|||||++.+...+..
T Consensus 1 m~~~~~~~~~~~-~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 1 MGILFTRIWRLF-NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp -CHHHHHHHHHH-TTSCEEEEEEESTTSSHHHHHHHHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CchHHHHHHHhc-CCCccEEEEECCCCCCHHHHHHHHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 6743 3333343 5788999999999999999999999888877788888877888889999999999999999888899
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+++.+|++++|+|+++++++.....++..+.......+.|+++|+||+|+.+....+++...+....+.. .+++++++|
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~S 158 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACC 158 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCS-SCEEEEECB
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcC-CCcEEEEcc
Confidence 9999999999999999999999999999988765456899999999999987766777776665443333 567999999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|.|+++++++|.+.+.+.
T Consensus 159 a~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 159 ALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp TTTTBTHHHHHHHHHHHHCC-
T ss_pred CCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 4
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.5e-34 Score=198.64 Aligned_cols=166 Identities=45% Similarity=0.825 Sum_probs=146.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
.+.++|+++|++|+|||||++++.++.+....+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 84 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDS 84 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEET
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhccCCEEEEEEEC
Confidence 46799999999999999999999998888888888888888889999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++.++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|+++++++|
T Consensus 85 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 163 (171)
T 1upt_A 85 CDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKD-RKWQIFKTSATKGTGLDEAMEWL 163 (171)
T ss_dssp TCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTT-SCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccC-CceEEEECcCCCCcCHHHHHHHH
Confidence 99999999999998888765556899999999999988767777777666544443 67799999999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.++
T Consensus 164 ~~~i~~~ 170 (171)
T 1upt_A 164 VETLKSR 170 (171)
T ss_dssp HHHHHTC
T ss_pred HHHHhhc
Confidence 9988654
No 5
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=100.00 E-value=8.9e-35 Score=198.63 Aligned_cols=163 Identities=45% Similarity=0.856 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCc
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 96 (185)
+||+++|++|+|||||++++.++.+....||.+.....+..++..+.+|||||++.+...+..+++.+|++++|+|++++
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 80 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCG
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCH
Confidence 58999999999999999999988887778888877778888889999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 97 RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 97 ~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
+++.....++..+.......+.|+++|+||+|+.+....+++...+....... ..++++++||++|.|+++++++|.+.
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l~~~ 159 (164)
T 1r8s_A 81 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWLSNQ 159 (164)
T ss_dssp GGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS-CCEEEEECBTTTTBTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccC-ccEEEEEcccCCCcCHHHHHHHHHHH
Confidence 99999999998888765566899999999999987766677777666544433 56889999999999999999999988
Q ss_pred Hhhh
Q 029920 177 IASR 180 (185)
Q Consensus 177 ~~~~ 180 (185)
+.++
T Consensus 160 i~~~ 163 (164)
T 1r8s_A 160 LRNQ 163 (164)
T ss_dssp C---
T ss_pred Hhhc
Confidence 7653
No 6
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-35 Score=204.54 Aligned_cols=179 Identities=45% Similarity=0.842 Sum_probs=147.4
Q ss_pred CChH--HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHH
Q 029920 1 MGLL--SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWR 78 (185)
Q Consensus 1 ~~~~--~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 78 (185)
||.. ..++..+...+.++|+++|++|+|||||++++.++.+..+.+|.++....+.+++..+.+|||||++.+...+.
T Consensus 1 mg~~~~~~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 1 MGNIFSSMFDKLWGSNKELRILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp -CHHHHHHHGGGTTCSSCEEEEEEEETTSSHHHHHHHTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CchHHHHHHHHhcCCCCccEEEEECCCCCCHHHHHHHHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 6732 33344443378999999999999999999999988887788888888888888899999999999999888889
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+++.+|++++|+|++++.+++....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 159 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKD-RSWSIVAS 159 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCS-SCEEEEEE
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEEc
Confidence 99999999999999999999999999999887765456899999999999987767777777666443333 56789999
Q ss_pred cccCCCCHHHHHHHHHHHHhhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
||++|.|+++++++|.+.+.++
T Consensus 160 Sa~~~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 160 SAIKGEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp BGGGTBTHHHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999988764
No 7
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=100.00 E-value=3.3e-35 Score=204.25 Aligned_cols=166 Identities=37% Similarity=0.734 Sum_probs=141.5
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
.....+.++|+++|++|+|||||+++|.+..+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++
T Consensus 15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred cCCCCceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 33456679999999999999999999999998778888888778888899999999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+|++++.++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|++++
T Consensus 95 v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~Sa~~g~gi~~l 173 (181)
T 2h17_A 95 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKD-HQWHIQACCALTGEGLCQG 173 (181)
T ss_dssp EEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECBTTTTBTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccC-CceEEEEccCCCCcCHHHH
Confidence 999999999999999999888764456899999999999987767777777666544333 5679999999999999999
Q ss_pred HHHHHHH
Q 029920 170 FDWLVQD 176 (185)
Q Consensus 170 ~~~l~~~ 176 (185)
+++|.+.
T Consensus 174 ~~~l~~~ 180 (181)
T 2h17_A 174 LEWMMSR 180 (181)
T ss_dssp HHHHHTC
T ss_pred HHHHHhh
Confidence 9998753
No 8
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=100.00 E-value=8.2e-35 Score=204.21 Aligned_cols=166 Identities=43% Similarity=0.827 Sum_probs=142.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
..+.++|+++|++|+|||||++++.++.+....+|.++....+...+..+.+|||||++.+...+..+++.+|++++|+|
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D 105 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD 105 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHHTCCEEEEEEE
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 56789999999999999999999999888777788888888888899999999999999998899999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
+++++++.....++..++......+.|+++|+||+|+.+....+++...+....... ..++++++||++|.|+++++++
T Consensus 106 ~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~ 184 (192)
T 2b6h_A 106 SNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRS-RTWYVQATCATQGTGLYDGLDW 184 (192)
T ss_dssp TTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSS-CCEEEEECBTTTTBTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccC-CceEEEECcCCCcCCHHHHHHH
Confidence 999999999999999888765566899999999999987766777777776544443 6788999999999999999999
Q ss_pred HHHHHhh
Q 029920 173 LVQDIAS 179 (185)
Q Consensus 173 l~~~~~~ 179 (185)
|.+.+.+
T Consensus 185 l~~~i~~ 191 (192)
T 2b6h_A 185 LSHELSK 191 (192)
T ss_dssp HHHHTTT
T ss_pred HHHHHhc
Confidence 9988754
No 9
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=100.00 E-value=4e-35 Score=205.02 Aligned_cols=166 Identities=43% Similarity=0.827 Sum_probs=146.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
++.++|+++|++|+|||||++++.++.+....+|.+.....+..++..+.+|||||++.+...+..+++.+|++++|+|+
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 99 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDS 99 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEET
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeC
Confidence 67899999999999999999999998887778888888888888999999999999998888888899999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
++++++.....++..++......+.|+++|+||+|+.+....+++...+....... .+++++++||++|.|+++++++|
T Consensus 100 ~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~l 178 (189)
T 2x77_A 100 TDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMN-RTWTIVKSSSKTGDGLVEGMDWL 178 (189)
T ss_dssp TCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccC-CceEEEEccCCCccCHHHHHHHH
Confidence 99999999999998888765556899999999999987767777777766544443 56799999999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.++
T Consensus 179 ~~~i~~~ 185 (189)
T 2x77_A 179 VERLREQ 185 (189)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 9988765
No 10
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=3e-34 Score=200.59 Aligned_cols=167 Identities=35% Similarity=0.632 Sum_probs=144.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
..+.++|+|+|++|+|||||+++|.+..+. .+.+|.+.....+...+..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 98 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMV 98 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEE
Confidence 456799999999999999999999987775 5778888888888888999999999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
|+++++++.....++..++......+.|+++|+||+|+.......++...+....... ..++++++||++|.|++++++
T Consensus 99 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gv~~l~~ 177 (188)
T 1zd9_A 99 DAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQD-REICCYSISCKEKDNIDITLQ 177 (188)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCS-SCEEEEECCTTTCTTHHHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhcc-CCeeEEEEECCCCCCHHHHHH
Confidence 9999999999999999888765556899999999999987766667766665544333 678899999999999999999
Q ss_pred HHHHHHhhh
Q 029920 172 WLVQDIASR 180 (185)
Q Consensus 172 ~l~~~~~~~ 180 (185)
+|.+.+.++
T Consensus 178 ~l~~~~~~~ 186 (188)
T 1zd9_A 178 WLIQHSKSR 186 (188)
T ss_dssp HHHHTCC--
T ss_pred HHHHHHHhh
Confidence 999877654
No 11
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=100.00 E-value=2.9e-34 Score=201.11 Aligned_cols=165 Identities=30% Similarity=0.588 Sum_probs=139.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
...+.++|+++|++|+|||||++++.++.+..+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|++++|+
T Consensus 19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 98 (190)
T 1m2o_B 19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLV 98 (190)
T ss_dssp -----CEEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEE
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEE
Confidence 34667899999999999999999999998888888988888888899999999999999999888889999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc------ccCccceEEEeecccCCCC
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA------MDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~Sa~~~~~ 165 (185)
|++++++++....++..++......+.|+++|+||+|+.+....+++.+.+.... +.....++++++||++|.|
T Consensus 99 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 178 (190)
T 1m2o_B 99 DAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 178 (190)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBS
T ss_pred ECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCC
Confidence 9999999999999999888765556899999999999987666677766654321 1223567899999999999
Q ss_pred HHHHHHHHHHH
Q 029920 166 LLEGFDWLVQD 176 (185)
Q Consensus 166 i~~l~~~l~~~ 176 (185)
++++|++|.+.
T Consensus 179 i~~l~~~l~~~ 189 (190)
T 1m2o_B 179 YLEAFQWLSQY 189 (190)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 12
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=200.36 Aligned_cols=168 Identities=36% Similarity=0.691 Sum_probs=140.1
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCC--CcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGED--TSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....+.++|+++|++|+|||||+++|.+.. ...+.+|.+.....+.+++..+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 335667999999999999999999999887 346678888888888888999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhcccc--CCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERL--SGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|++++.++.....++..+...... .+.|+++|+||+|+.+....+++...+....+.. .+++++++||++|.|+
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi 174 (190)
T 2h57_A 96 FVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKD-KPWHICASDAIKGEGL 174 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCS-SCEEEEECBTTTTBTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccC-CceEEEEccCCCCcCH
Confidence 999999999999999998888776443 5799999999999987766777766665333322 5679999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029920 167 LEGFDWLVQDIAS 179 (185)
Q Consensus 167 ~~l~~~l~~~~~~ 179 (185)
++++++|.+.+.+
T Consensus 175 ~~l~~~l~~~i~~ 187 (190)
T 2h57_A 175 QEGVDWLQDQIQT 187 (190)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988754
No 13
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=3.6e-34 Score=201.47 Aligned_cols=170 Identities=32% Similarity=0.639 Sum_probs=143.7
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCccc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
......++|+|+|++|||||||+++|.+..+... .+|.++....+......+.+|||||++.+...+..+++.+|+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 91 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVI 91 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEE
Confidence 4467789999999999999999999999988654 88999888888889999999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhcccc-------CCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERL-------SGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+|+|++++++|.....|+..++..... .+.|+++|+||+|+......+++...+..........++++++||+
T Consensus 92 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 171 (199)
T 4bas_A 92 FVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGL 171 (199)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTT
T ss_pred EEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCC
Confidence 999999999999999999988776332 2799999999999988877777777776544423377899999999
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 029920 162 TGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (185)
+|.|++++|++|.+.+.++
T Consensus 172 ~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 172 KGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp TTBTHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 14
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=100.00 E-value=3.1e-34 Score=202.22 Aligned_cols=173 Identities=31% Similarity=0.567 Sum_probs=136.2
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
+.++......+.++|+++|++|+|||||++++.+..+..+.+|.+.....+.+++..+.+|||||++.++..+..+++.+
T Consensus 14 ~~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 93 (198)
T 1f6b_A 14 SVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAI 93 (198)
T ss_dssp HHHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGGGC
T ss_pred HHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHhcC
Confidence 34444444567789999999999999999999998888778888877788888899999999999999888889999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc---------cc--Cccce
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA---------MD--KTRHW 153 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~---------~~--~~~~~ 153 (185)
|++++|+|+++++++.....++..++......+.|+++|+||+|+.+....+++.+.+.... +. ....+
T Consensus 94 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (198)
T 1f6b_A 94 NGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPL 173 (198)
T ss_dssp SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceE
Confidence 99999999999999999999999988765556899999999999987666666666554321 11 12467
Q ss_pred EEEeecccCCCCHHHHHHHHHHHH
Q 029920 154 KIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 154 ~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
++++|||++|.|++++|++|.+.+
T Consensus 174 ~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 174 EVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 899999999999999999997653
No 15
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=6.4e-34 Score=202.75 Aligned_cols=161 Identities=19% Similarity=0.349 Sum_probs=122.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.+.+.+||+|+|++|+|||||++++..+.+. .+.+|.+.. ...+..++ +.+.+|||+|++.+..++..|++.+++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~ 88 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAA 88 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccE
Confidence 3556799999999999999999999988775 567787743 33444444 788999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|||++++++|+.+..|+..+... ..++.|+++|+||+|+.+. ...++.... +...+++|++|||++|.
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~-~~~~~piilVgNK~Dl~~~r~V~~~e~~~~------a~~~~~~~~e~SAktg~ 161 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTE-RGSDVIIMLVGNKTDLADKRQVSIEEGERK------AKELNVMFIETSAKAGY 161 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECTTCGGGCCSCHHHHHHH------HHHHTCEEEEEBTTTTB
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHh-cCCCCeEEEEeeccchHhcCcccHHHHhhH------HHHhCCeeEEEeCCCCc
Confidence 99999999999999999999888665 3467999999999998653 233333221 11256789999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
||+++|+.|++.+.+
T Consensus 162 nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 162 NVKQLFRRVAAALPG 176 (216)
T ss_dssp SHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988754
No 16
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-32 Score=206.05 Aligned_cols=166 Identities=46% Similarity=0.856 Sum_probs=143.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDS 93 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 93 (185)
.+.++|+|+|++|+|||||+++|.+..+....+|.+.....+...+..+.+|||||++.+...+..+++.+|++|+|||+
T Consensus 163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~ 242 (329)
T 3o47_A 163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 242 (329)
T ss_dssp CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEET
T ss_pred cCcceEEEECCCCccHHHHHHHHhCCCCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEEC
Confidence 45679999999999999999999999887777888888888889999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 94 SDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 94 ~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+++.++.....++..++......++|+++|+||+|+.+.....++...+....... ..++++++||++|.|++++|++|
T Consensus 243 ~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~-~~~~~~~vSAk~g~gi~el~~~l 321 (329)
T 3o47_A 243 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH-RNWYIQATCATSGDGLYEGLDWL 321 (329)
T ss_dssp TCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCS-SCEEEEECBTTTTBTHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhc-CCCEEEEEECCCCcCHHHHHHHH
Confidence 99999999999999988876667899999999999988877778877776654443 67899999999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.++
T Consensus 322 ~~~l~~~ 328 (329)
T 3o47_A 322 SNQLRNQ 328 (329)
T ss_dssp HHHHTC-
T ss_pred HHHHHhc
Confidence 9988653
No 17
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.4e-31 Score=183.04 Aligned_cols=160 Identities=16% Similarity=0.193 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVV 91 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 91 (185)
+.+||+++|++|+|||||++++.+.......++.+.+.. .+..++ ..+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (166)
T 3q72_A 1 SVYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY 80 (166)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHCCC----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEEE
T ss_pred CeEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEE
Confidence 358999999999999999999998877666666664443 334433 67899999999999999999999999999999
Q ss_pred eCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 92 DSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 92 d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|++++++++....|+..+.......+.|+++|+||+|+.+... ..+.. .+. ...+++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~~Sa~~~~gi~~l 154 (166)
T 3q72_A 81 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGR-ACA-----VVFDCKFIETSAALHHNVQAL 154 (166)
T ss_dssp ETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHH-HHH-----HHTTCEEEECBGGGTBSHHHH
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHH-HHH-----HHhCCcEEEeccCCCCCHHHH
Confidence 9999999999999999888765566899999999999875432 22222 111 114568999999999999999
Q ss_pred HHHHHHHHhhh
Q 029920 170 FDWLVQDIASR 180 (185)
Q Consensus 170 ~~~l~~~~~~~ 180 (185)
|+++.+.+.++
T Consensus 155 ~~~l~~~~~~~ 165 (166)
T 3q72_A 155 FEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 99999988664
No 18
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=100.00 E-value=3.2e-31 Score=210.21 Aligned_cols=168 Identities=43% Similarity=0.838 Sum_probs=148.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEe
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVD 92 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 92 (185)
....++|+++|.+|+|||||+++|.+..+....+|.+.....+.+.++.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D 398 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVD 398 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEE
Confidence 34579999999999999999999999988888899999999999999999999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 93 SSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 93 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
+++++++.....++..++......++|+++|+||+|+.+....+++...+....... ..++++++||++|.|+++++++
T Consensus 399 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~SA~~g~gi~~l~~~ 477 (497)
T 3lvq_E 399 CADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRD-RNWYVQPSCATSGDGLYEGLTW 477 (497)
T ss_dssp TTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCHHHHHHHTTCTTCCS-SCEEEEECBTTTTBTHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCHHHHHHHhchhhhhc-CCeEEEEEECCCCCCHHHHHHH
Confidence 999999999999999998876667899999999999988777777777776544433 6789999999999999999999
Q ss_pred HHHHHhhhc
Q 029920 173 LVQDIASRI 181 (185)
Q Consensus 173 l~~~~~~~~ 181 (185)
|.+.+.+..
T Consensus 478 l~~~~~~~~ 486 (497)
T 3lvq_E 478 LTSNYKSKL 486 (497)
T ss_dssp HHHHCC---
T ss_pred HHHHHHhcC
Confidence 999886543
No 19
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=3.8e-31 Score=185.38 Aligned_cols=166 Identities=21% Similarity=0.258 Sum_probs=128.1
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE--EEE--cCeEEEEEEcCCchhhHHHHHhhhcC
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT--VTY--QKYTLNIWDVGGQRTIRSYWRNYFEQ 83 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~ 83 (185)
......+.++|+|+|++|+|||||+++|.+..+. .+.++.+..... +.. ....+.+|||||++.+...+..+++.
T Consensus 16 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (192)
T 2fg5_A 16 PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRG 95 (192)
T ss_dssp -----CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTT
T ss_pred cccccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhcc
Confidence 3344567899999999999999999999988864 566777755443 333 34789999999999999999999999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--CCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--ALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ....++...... ..+++++++||+
T Consensus 96 ~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~ 168 (192)
T 2fg5_A 96 SAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAE------SIGAIVVETSAK 168 (192)
T ss_dssp CSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------TTTCEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCC
Confidence 99999999999999999988887776554 335799999999999864 223333333221 145789999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q 029920 162 TGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~ 181 (185)
+|.|+++++++|.+.+.+..
T Consensus 169 ~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 169 NAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp TTBSHHHHHHHHHHTCC---
T ss_pred CCcCHHHHHHHHHHHHHhhC
Confidence 99999999999999876543
No 20
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.98 E-value=9.9e-31 Score=180.18 Aligned_cols=161 Identities=17% Similarity=0.174 Sum_probs=117.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE--EEEEEEcC--eEEEEEEcCCchh--hHHHHHhhhcCCCEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN--IKTVTYQK--YTLNIWDVGGQRT--IRSYWRNYFEQTDGL 87 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~--~~~~~~~~~~~~d~~ 87 (185)
...++|+++|++|+|||||+++|.+..+....++.+.. ...+..++ ..+.+|||||++. +......+++.+|++
T Consensus 2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 2 MALYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred ceEEEEEEECCCCccHHHHHHHHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 46799999999999999999999998886655555533 34455555 5789999999887 456677888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++....|+..+.......+.|+++|+||+|+.+... .++... +. ...+++++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRA-CA-----VVFDCKFIETSATLQHN 155 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHH-HH-----HHHTSEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHH-HH-----HHcCCeEEEEecCCCCC
Confidence 99999999999999988888776654445799999999999975422 222221 11 11456899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.++
T Consensus 156 i~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 156 VAELFEGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 21
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5.3e-31 Score=184.61 Aligned_cols=165 Identities=22% Similarity=0.340 Sum_probs=131.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
..+.++|+++|++|+|||||+++|.+..+. ...++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 91 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV 91 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 345799999999999999999999988764 4556665443 3444443 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
++|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ...+...... ..+++++++||+++.|+
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi 165 (195)
T 1x3s_A 92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFAR------KHSMLFIEASAKTCDGV 165 (195)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHH------HTTCEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHH------HcCCEEEEecCCCCCCH
Confidence 9999999999999998888888766545679999999999995432 2223222211 14568999999999999
Q ss_pred HHHHHHHHHHHhhhccc
Q 029920 167 LEGFDWLVQDIASRIYL 183 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~~~ 183 (185)
++++++|.+.+.+....
T Consensus 166 ~~l~~~l~~~~~~~~~~ 182 (195)
T 1x3s_A 166 QCAFEELVEKIIQTPGL 182 (195)
T ss_dssp HHHHHHHHHHHHTSGGG
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999998765443
No 22
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.98 E-value=1.1e-30 Score=182.04 Aligned_cols=162 Identities=18% Similarity=0.200 Sum_probs=126.0
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcceEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
...+.+.+||+++|++|||||||++++.+..+.. +.++.+.....+.+++ +.+.+|||+|++.+. +++.+|+
T Consensus 14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~ 88 (184)
T 3ihw_A 14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA 88 (184)
T ss_dssp --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence 4456778999999999999999999999887753 5556554445666666 677889999998876 6778999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC----CCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING----ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+++|||++++.+++.+..|+..+.......+.|+++|+||+|+.. ....++...... .....+++++||++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLST-----DLKRCTYYETCATY 163 (184)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HTTTCEEEEEBTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHH-----HcCCCeEEEecCCC
Confidence 999999999999999999888887764446799999999999842 222333332221 11236899999999
Q ss_pred CCCHHHHHHHHHHHHhhhc
Q 029920 163 GEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~~ 181 (185)
|.|++++|+++.+.+.++.
T Consensus 164 ~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999887653
No 23
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.98 E-value=8.7e-31 Score=184.91 Aligned_cols=161 Identities=22% Similarity=0.334 Sum_probs=125.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+++|++|+|||||+++|.+..+. .+.+|.+ +....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 26 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 26 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 456799999999999999999999988774 4456655 4455566665 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccce-EEEeecccCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTGE 164 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (185)
++|||++++.+++.+..|+..+.... ..+.|+++|+||+|+.+. ...++....... .++ +++++||++|.
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~~~SA~~g~ 178 (201)
T 2hup_A 106 ILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH------YDILCAIETSAKDSS 178 (201)
T ss_dssp EEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH------TTCSEEEECBTTTTB
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH------cCCCEEEEEeCCCCC
Confidence 99999999999999888887776542 357999999999998652 233333332211 345 89999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 029920 165 GLLEGFDWLVQDIASR 180 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (185)
|++++|++|.+.+.++
T Consensus 179 gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 179 NVEEAFLRVATELIMR 194 (201)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999988654
No 24
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=1.3e-30 Score=181.13 Aligned_cols=162 Identities=17% Similarity=0.238 Sum_probs=128.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+.. ......++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 94 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL 94 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 556899999999999999999999987664 444555533 33344454 45677999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeeccc-CCCC
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAY-TGEG 165 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~ 165 (185)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||+ ++.|
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~~ 168 (183)
T 3kkq_A 95 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMAT------KYNIPYIETSAKDPPLN 168 (183)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHH------HHTCCEEEEBCSSSCBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHH------HhCCeEEEeccCCCCCC
Confidence 99999999999999998888877655668999999999998653 23333322221 145679999999 9999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.++
T Consensus 169 v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 169 VDKTFHDLVRVIRQQ 183 (183)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 999999999988653
No 25
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.97 E-value=1.8e-30 Score=181.68 Aligned_cols=164 Identities=17% Similarity=0.318 Sum_probs=130.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE---EEEEc-----------CeEEEEEEcCCchhhHHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK---TVTYQ-----------KYTLNIWDVGGQRTIRSY 76 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~---~~~~~-----------~~~~~~~D~~g~~~~~~~ 76 (185)
..+..++|+|+|++|+|||||+++|.+..+. ...++.+.... .+..+ ...+.+|||||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 3566899999999999999999999987764 45566665443 34444 368999999999999999
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceE
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWK 154 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+. ...++...... ..+++
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~ 160 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAE------KYGIP 160 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCC
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCC
Confidence 99999999999999999999999998888888776544468999999999998652 22333332221 13567
Q ss_pred EEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
++++||++|.|+++++++|.+.+.++.
T Consensus 161 ~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 161 YFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999886543
No 26
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.97 E-value=2.4e-30 Score=178.70 Aligned_cols=164 Identities=17% Similarity=0.274 Sum_probs=127.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
+....++|+++|++|+|||||++++.+..+. ...++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 3 GKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CCEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred CccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 3567899999999999999999999987764 455666644 34455555 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCC-CCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGA-LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+++|+|++++.++.....|+..+..... ..+.|+++|+||+|+... ...++....... ...++++++||++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~ 157 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRD-----NGDYPYFETSAKD 157 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHH-----TTCCCEEECCTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHh-----cCCceEEEEeCCC
Confidence 9999999999999888887777755432 257899999999998643 233333332211 1456899999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 029920 163 GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~ 180 (185)
|.|++++++++.+.+.++
T Consensus 158 ~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 158 ATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988653
No 27
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=1.7e-30 Score=178.14 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcC--eEEEEEEcCCchhhHH-HHHhhhcCCCEEEE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQK--YTLNIWDVGGQRTIRS-YWRNYFEQTDGLVW 89 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~ 89 (185)
.+||+++|++|+|||||+++|.+..... ...+.......+..++ ..+.+|||||++.+.. .+..+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 5899999999999999999998766542 2233445555555655 6788999999988765 66777889999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|++++++++....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG------TLSCKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH------HcCCcEEEecCccCCCHH
Confidence 9999999999999999998887655568999999999998632 22222222111 145689999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
++|+++.+.+..+
T Consensus 156 ~l~~~l~~~i~~~ 168 (169)
T 3q85_A 156 ELFEGAVRQIRLR 168 (169)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988654
No 28
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.97 E-value=2.5e-30 Score=176.77 Aligned_cols=159 Identities=20% Similarity=0.298 Sum_probs=124.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5799999999999999999999987764 3445555333 2344544 5899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|+++++++.....|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 83 FSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAD------QWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEECCTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCCCHHH
Confidence 999999999999888888877655567999999999998643 22333332221 1456899999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
+++++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998764
No 29
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=1.7e-30 Score=181.12 Aligned_cols=162 Identities=20% Similarity=0.319 Sum_probs=126.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce-EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF-NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~-~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
...++|+++|++|+|||||+++|.+..+. .+.++... ....+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999999999999987764 33444442 233444555 457889999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+|++++.++.....|+..+.......+.|+++|+||+|+.+.....+....+... .+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~g~gi~~l 156 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARS-----YGIPFIETSAKTRQGVDDA 156 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHH-----HTCCEEECCTTTCTTHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHH-----cCCeEEEEeCCCCCCHHHH
Confidence 99999999999999988888776666789999999999997544333333222211 4567999999999999999
Q ss_pred HHHHHHHHhhh
Q 029920 170 FDWLVQDIASR 180 (185)
Q Consensus 170 ~~~l~~~~~~~ 180 (185)
+++|.+.+.+.
T Consensus 157 ~~~l~~~~~~~ 167 (189)
T 4dsu_A 157 FYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988654
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-31 Score=182.42 Aligned_cols=158 Identities=22% Similarity=0.322 Sum_probs=125.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+.++|+++|++|+|||||++++.+..+. ...++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 3689999999999999999999988764 4556666443 3445544 589999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-----CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-----TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
|+|++++.++.....|+..+.... ..+.|+++|+||+|+.... ...+... +. ...+++++++||++|.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~ 154 (170)
T 1ek0_A 82 VYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEK-LA-----EEKGLLFFETSAKTGE 154 (170)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHH-HH-----HHHTCEEEECCTTTCT
T ss_pred EEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHH-HH-----HHcCCEEEEEeCCCCC
Confidence 999999999999888888776653 3579999999999986431 1122211 11 1145689999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
|+++++++|.+.+.+
T Consensus 155 gi~~l~~~l~~~i~~ 169 (170)
T 1ek0_A 155 NVNDVFLGIGEKIPL 169 (170)
T ss_dssp THHHHHHHHHTTSCC
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999876643
No 31
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.6e-30 Score=182.50 Aligned_cols=163 Identities=20% Similarity=0.245 Sum_probs=128.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.....++|+++|++|+|||||+++|.+..+. ...++.+. ....+.+++ +.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 101 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANA 101 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCE
Confidence 3456799999999999999999999887775 45566653 344555655 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...++..... ...+++++++||++|.
T Consensus 102 ~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~g~ 174 (201)
T 2ew1_A 102 LILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFS------EAQDMYYLETSAKESD 174 (201)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHH------HHHTCCEEECCTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHH------HHcCCEEEEEeCCCCC
Confidence 99999999999999888887776554 2357899999999998643 2223322211 1145689999999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 029920 165 GLLEGFDWLVQDIASRI 181 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~~ 181 (185)
|++++|++|.+.+.++.
T Consensus 175 gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 175 NVEKLFLDLACRLISEA 191 (201)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999886643
No 32
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.97 E-value=3e-30 Score=179.48 Aligned_cols=165 Identities=20% Similarity=0.289 Sum_probs=129.5
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
....+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++ +.+.+|||||++.+...+..+++.+|+
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 92 (187)
T 2a9k_A 13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 92 (187)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence 34567899999999999999999999987764 3445555333 3345554 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||+++.
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 166 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRA 166 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH------HcCCeEEEeCCCCCC
Confidence 9999999999999999988888877655557999999999998643 23333333221 145689999999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 029920 165 GLLEGFDWLVQDIASRI 181 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~~ 181 (185)
|+++++++|.+.+.++.
T Consensus 167 gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 167 NVDKVFFDLMREIRARK 183 (187)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhh
Confidence 99999999999887653
No 33
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=1.7e-30 Score=181.90 Aligned_cols=162 Identities=21% Similarity=0.336 Sum_probs=126.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....+||+++|++|+|||||+++|.+..+.. ..++.+ +....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 97 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 97 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEE
Confidence 4457899999999999999999999887753 344444 4444556655 6899999999999988888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|
T Consensus 98 i~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g 170 (191)
T 2a5j_A 98 LLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAR------EHGLIFMETSAKTACN 170 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence 9999999999999988888777654 2357999999999998642 22333322211 1456899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|++|.+.+.++.
T Consensus 171 i~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 171 VEEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887653
No 34
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=4.5e-31 Score=185.20 Aligned_cols=162 Identities=22% Similarity=0.295 Sum_probs=125.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----------cCcceEEEEEE-----EcCeEEEEEEcCCchhhHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----------PTLGFNIKTVT-----YQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----------~t~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~ 75 (185)
.....+||+++|++|+|||||++.+.+.....+. +|.+....... .....+.+|||||++.+..
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3566899999999999999999888776655432 23333322211 1236899999999999999
Q ss_pred HHHhhhcCCCEEEEEEeCC------CcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920 76 YWRNYFEQTDGLVWVVDSS------DLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK 149 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (185)
.+..+++.+|++++|||++ +.+++..+..|+..+. ....+.|+++|+||+|+.+....++.......
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~----- 162 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPDALPVEMVRAVVDP----- 162 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTTCCCHHHHHHHHCT-----
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhcccccCHHHHHHHHHh-----
Confidence 9999999999999999999 4456666666665552 13357999999999999887677666655543
Q ss_pred ccce-EEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 150 TRHW-KIVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 150 ~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
.++ +++++||++|.|++++|++|.+.+.++.
T Consensus 163 -~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~ 194 (198)
T 3t1o_A 163 -EGKFPVLEAVATEGKGVFETLKEVSRLVLARV 194 (198)
T ss_dssp -TCCSCEEECBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred -cCCceEEEEecCCCcCHHHHHHHHHHHHHHHh
Confidence 445 8999999999999999999999887654
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.97 E-value=1.4e-30 Score=180.02 Aligned_cols=162 Identities=21% Similarity=0.344 Sum_probs=127.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC---eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK---YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~---~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.+|.+ +....+.+++ ..+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 457899999999999999999999988774 4456655 5556667665 799999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccc-c-CCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEER-L-SGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
+++|+|++++.+++.+..|+..+..... . ...|+++|+||+|+.+. ...++...... ..+++++++||++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~ 156 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ------ENGFSSHFVSAKT 156 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEEECTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHH------HcCCcEEEEeCCC
Confidence 9999999999999888877777655321 1 23448999999998643 22233222211 1456899999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 029920 163 GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~ 180 (185)
|.|++++|++|.+.+.+.
T Consensus 157 ~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 157 GDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp CTTHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999988664
No 36
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.97 E-value=2.7e-30 Score=177.03 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=126.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
+.+.++|+++|++|+|||||+++|.+..+. ...++.+... ..+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 456799999999999999999999987765 3445665443 334444 46899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+. ...++...... ..+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYAD------DNSLLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence 9999999999999988888877665 3357999999999998543 22233322211 1567899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
+++++++|.+.+.+
T Consensus 156 i~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 156 VNEIFMAIAKKLPK 169 (170)
T ss_dssp HHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 37
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=8e-31 Score=182.12 Aligned_cols=161 Identities=23% Similarity=0.389 Sum_probs=101.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+++|++|+|||||+++|.+..+. ...++.+ +....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 356799999999999999999999987764 4455555 3344556666 7899999999999988888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 157 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLAL------DYGIKFMETSAKANIN 157 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHH------HHTCEEEECCC---CC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence 9999999999999988888777654 23479999999999996532 2333332221 1456899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.++
T Consensus 158 i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 158 VENAFFTLARDIKAK 172 (183)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 38
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=1.7e-30 Score=180.14 Aligned_cols=163 Identities=17% Similarity=0.267 Sum_probs=127.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.++.+ ..+.++.+... ..+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 3 ~~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 3 QSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp CEEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 45689999999999999999999996655 45566666443 3345555 67899999999998888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|++++++++.+..|+..+.......+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAE------SWNAAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHH------HhCCcEEEEecCCCCCH
Confidence 999999999999999998888777666689999999999986432 2233222221 14568999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
+++|+++.+.+.+..
T Consensus 157 ~~l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 157 VDVFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887643
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.5e-30 Score=182.54 Aligned_cols=170 Identities=21% Similarity=0.284 Sum_probs=124.8
Q ss_pred HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhh
Q 029920 6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYF 81 (185)
Q Consensus 6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~ 81 (185)
+...+......++|+++|++|+|||||+++|.+..+. .+.+|.+.... .+..++ +.+.+|||||++.+...+..++
T Consensus 13 ~~~~~~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 92 (194)
T 3reg_A 13 GAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSY 92 (194)
T ss_dssp --------CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGC
T ss_pred ccccccccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhc
Confidence 3344555677899999999999999999999988774 44566664433 334444 5679999999999999999999
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC----CCHHHHHHhcCcccccCccceE-EE
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA----LTPTEIAKVLNLEAMDKTRHWK-IV 156 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (185)
+.+|++++|+|++++.++..+...|...+.. ...+.|+++|+||+|+.+. ...++....... .+++ ++
T Consensus 93 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~ 165 (194)
T 3reg_A 93 ADSDVVLLCFAVNNRTSFDNISTKWEPEIKH-YIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQK------LGCVAYI 165 (194)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHTHHHHHHH-HCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHH------HTCSCEE
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHh------cCCCEEE
Confidence 9999999999999999999974444444443 2357999999999998643 223333222211 3344 99
Q ss_pred eecccCCCCHHHHHHHHHHHHhhhcc
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
++||++|.|++++|++|.+.+.++.+
T Consensus 166 ~~Sa~~~~gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 166 EASSVAKIGLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHCSCC
T ss_pred EeecCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999998876543
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.6e-30 Score=177.69 Aligned_cols=163 Identities=19% Similarity=0.329 Sum_probs=120.6
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEEE--EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNIK--TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~~--~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
..+..++|+++|++|+|||||+++|.+..+. ...++.+.... .+..++ ..+.+|||||++.+...+..+++.+|
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d 85 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH 85 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence 3567899999999999999999999988774 44566664433 334554 58999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+.+.. ..++...... ..+++++++||++|
T Consensus 86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~ 158 (180)
T 2g6b_A 86 ALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAK------EYGLPFMETSAKTG 158 (180)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHH------HHTCCEEECCTTTC
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEeCCCC
Confidence 9999999999999998888877776542 2579999999999987542 2222222111 14568999999999
Q ss_pred CCHHHHHHHHHHHHhhhc
Q 029920 164 EGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~~ 181 (185)
.|++++++++.+.+.++.
T Consensus 159 ~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 159 LNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 41
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=180.53 Aligned_cols=162 Identities=21% Similarity=0.388 Sum_probs=129.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+++|++|+|||||+++|.+..+. ...++.+ .....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 456799999999999999999999988764 4445555 3444556665 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.... .+...... ..+++++++||++|.|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD------SLGIPFLETSAKNATN 165 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHH------HcCCcEEEEeCCCCCC
Confidence 9999999999999988887776554 3357899999999998654322 22222111 1456899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|++|.+.+.++.
T Consensus 166 v~~l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987654
No 42
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=5.2e-30 Score=177.29 Aligned_cols=158 Identities=14% Similarity=0.168 Sum_probs=120.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+.+||+++|++|+|||||+++|.+..+..+.+|.+.. ...+..++ ..+.+|||||++. ..+++.+|++++
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHHSCCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 457899999999999999999999998887777777643 33455554 6789999999986 356788999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCC----CCCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDING----ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
|||+++++++..+..|+..+.... ..++.|+++|+||+|+.. ....++...... ...+++++++||++|
T Consensus 79 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 79 VFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXA-----DMKRCSYYETXATYG 153 (178)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHH-----HHSSEEEEEEBTTTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHH-----hhcCCeEEEEecccc
Confidence 999999999999888654443321 225789999999999842 222333332211 113578999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|++++|+++.+.+.+.
T Consensus 154 ~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999987654
No 43
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.97 E-value=8.9e-30 Score=176.38 Aligned_cols=164 Identities=19% Similarity=0.277 Sum_probs=126.6
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
.......++|+++|++|+|||||+++|.+..+.. ..++.+ +....+..++ ..+.+|||||++.+...+..+++.+
T Consensus 6 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 85 (181)
T 2efe_B 6 AGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGA 85 (181)
T ss_dssp ----CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTC
T ss_pred CCCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccC
Confidence 3446678999999999999999999999887753 335554 3344455543 6899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccC
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
|++++|+|++++.+++....|+..+... ..++.|+++|+||+|+.+.. ..++...... ..+++++++||++
T Consensus 86 d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~ 158 (181)
T 2efe_B 86 AAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ------ENGLFFMETSAKT 158 (181)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCEEEECCSSS
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHH------HcCCEEEEEECCC
Confidence 9999999999999999988888877665 33579999999999986532 2333332221 1456899999999
Q ss_pred CCCHHHHHHHHHHHHhhh
Q 029920 163 GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~~ 180 (185)
|.|+++++++|.+.+.+.
T Consensus 159 g~gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 159 ATNVKEIFYEIARRLPRV 176 (181)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999887654
No 44
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=1.9e-30 Score=177.38 Aligned_cols=159 Identities=16% Similarity=0.247 Sum_probs=125.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..+ ...+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999987764 44555554332 23333 46899999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|++++.+++....|+..+.......+.|+++|+||+|+.+.. ..++...... .....+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR-----QWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH-----HTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHH-----HccCCcEEEecCCCCCCHHH
Confidence 9999999999988888888776555689999999999986532 2223322211 11367899999999999999
Q ss_pred HHHHHHHHHh
Q 029920 169 GFDWLVQDIA 178 (185)
Q Consensus 169 l~~~l~~~~~ 178 (185)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.97 E-value=1.1e-29 Score=175.49 Aligned_cols=160 Identities=19% Similarity=0.291 Sum_probs=126.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
..+.++|+++|++|+|||||+++|.+..+. ...++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 566899999999999999999999988764 34455553 344445544 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 164 (179)
T 1z0f_A 92 LMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAE------ENGLLFLEASAKTGEN 164 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred EEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence 9999999999999888887776554 3357999999999998643 22333332221 1456899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
++++|+++.+.+.+
T Consensus 165 i~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 165 VEDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 46
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.97 E-value=7.8e-30 Score=177.48 Aligned_cols=162 Identities=22% Similarity=0.325 Sum_probs=128.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.++.++|+++|++|+|||||+++|.+..+. ...++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 456799999999999999999999988775 34455553 334455555 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ....+...... ..+++++++||++|.|
T Consensus 87 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 159 (186)
T 2bme_A 87 LLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQ------ENELMFLETSALTGEN 159 (186)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEecCCCCCC
Confidence 9999999999999888887776543 2357999999999998542 22233322211 1557899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|+++.+.+.++.
T Consensus 160 i~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 160 VEEAFVQCARKILNKI 175 (186)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 47
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=9.9e-30 Score=179.66 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=130.2
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.+..+.++|+|+|++|+|||||+++|.+..+. .+.++.+.. ...+..++ +.+.+|||||++.+...+..+++.+|+
T Consensus 9 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 9 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp --CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 34567899999999999999999999987764 445555533 23445555 589999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++.++.....|+..+.......+.|+++|+||+|+.+. ....+...... ..+++++++||++|.
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~ 162 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAE------QWNVNYVETSAKTRA 162 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEEECTTTCT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHH------HhCCeEEEEeCCCCC
Confidence 9999999999999999888888877655568999999999998653 22333332221 145689999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 029920 165 GLLEGFDWLVQDIASR 180 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (185)
|++++|++|.+.+.++
T Consensus 163 gi~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 163 NVDKVFFDLMREIRAR 178 (206)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHc
Confidence 9999999999988653
No 48
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.97 E-value=1.7e-30 Score=185.24 Aligned_cols=163 Identities=20% Similarity=0.351 Sum_probs=127.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEc------------CeEEEEEEcCCchhhHHHH
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQ------------KYTLNIWDVGGQRTIRSYW 77 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~------------~~~~~~~D~~g~~~~~~~~ 77 (185)
.++.++|+|+|++|+|||||+++|.+..+. .+.++.+.. ...+.++ ...+.+|||||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 456799999999999999999999988774 344555432 2333333 5689999999999999999
Q ss_pred HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEE
Q 029920 78 RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKI 155 (185)
Q Consensus 78 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
..+++.+|++++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ...+...... ..++++
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~ 175 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAD------KYGIPY 175 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCCE
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHH------HCCCcE
Confidence 99999999999999999999999888887766554333679999999999986532 2222222211 145679
Q ss_pred EeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 156 VGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
+++||+++.|+++++++|.+.+.++.
T Consensus 176 ~~~Sa~~g~gi~~l~~~l~~~i~~~~ 201 (217)
T 2f7s_A 176 FETSAATGQNVEKAVETLLDLIMKRM 201 (217)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999886643
No 49
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=4.8e-30 Score=182.58 Aligned_cols=165 Identities=24% Similarity=0.332 Sum_probs=120.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEc---CeEEEEEEcCCchhhHH-HHHhhhcCCCEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQ---KYTLNIWDVGGQRTIRS-YWRNYFEQTDGL 87 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~ 87 (185)
...+.++|+++|++|+|||||+++|++..+....++.......+.++ ...+.+|||||++.+.. .+..+++.+|++
T Consensus 3 ~~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 3 RKSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp -----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 35678999999999999999999999888765555555555556666 67899999999999887 788889999999
Q ss_pred EEEEeCCCcc-cHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------------------
Q 029920 88 VWVVDSSDLR-RLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTPTEIAKVLNL-------------------- 144 (185)
Q Consensus 88 i~v~d~~~~~-s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-------------------- 144 (185)
++|+|+++.. ++.....++...+... ...+.|+++|+||+|+............+..
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~ 162 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSS 162 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC----------
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCc
Confidence 9999999853 4666666666665432 2346899999999999876554433222210
Q ss_pred ----------ccccC-c--cceEEEeecccCC------CCHHHHHHHHHHH
Q 029920 145 ----------EAMDK-T--RHWKIVGCSAYTG------EGLLEGFDWLVQD 176 (185)
Q Consensus 145 ----------~~~~~-~--~~~~~~~~Sa~~~------~~i~~l~~~l~~~ 176 (185)
..++. . ..+++++|||++| .|++++|++|.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 163 TAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp --CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 00111 0 1788999999999 9999999999875
No 50
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.97 E-value=6.7e-30 Score=180.05 Aligned_cols=160 Identities=24% Similarity=0.352 Sum_probs=127.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE--EEEEEEcC------------------------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN--IKTVTYQK------------------------------ 59 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~--~~~~~~~~------------------------------ 59 (185)
.+..++|+|+|++|+|||||+++|.+..+. .+.++.+.. ...+..++
T Consensus 4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC------------------------------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccc
Confidence 467899999999999999999999988774 444555533 33344333
Q ss_pred ---------eEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 60 ---------YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 60 ---------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
..+.+|||||++.+...+..+++.+|++++|+|++++.++.....|+..+.... +.|+++|+||+|..
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D~~ 160 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKIDKN 160 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTTCC
T ss_pred ccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCCcc
Confidence 789999999999999999999999999999999999999999888888776643 49999999999943
Q ss_pred C-CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 131 G-ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
. ....++....... .+++++++||++|.|+++++++|.+.+.++.
T Consensus 161 ~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 161 KFQVDILEVQKYAQD------NNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CCSCHHHHHHHHHH------TTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH------cCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 2 2233444333221 4568999999999999999999999887764
No 51
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=179.46 Aligned_cols=161 Identities=21% Similarity=0.347 Sum_probs=127.1
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
...+.++|+++|++|+|||||+++|.+..+. ...++.+ .....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 3567899999999999999999999998775 3445555 4445566666 789999999999999889999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++.++..+..|+..+.... ++.|+++|+||+|+.+.. ...+...... ..+++++++||++|.
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 156 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAG------QMGIQLFETSAKENV 156 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHH------HcCCeEEEEECCCCC
Confidence 999999999999999988888776543 479999999999986532 2222222111 145689999999999
Q ss_pred CHHHHHHHHHHHHhhh
Q 029920 165 GLLEGFDWLVQDIASR 180 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~ 180 (185)
|+++++++|.+.+.+.
T Consensus 157 gi~~l~~~l~~~~~~~ 172 (181)
T 3tw8_B 157 NVEEMFNCITELVLRA 172 (181)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999987653
No 52
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.97 E-value=2.7e-30 Score=182.04 Aligned_cols=164 Identities=24% Similarity=0.383 Sum_probs=118.1
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
.....+.++|+++|++|+|||||+++|.+..+. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 101 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKA 101 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHC
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhC
Confidence 334566799999999999999999999988764 4555555 3334455554 6799999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC--------CCCHHHHHHhcCcccccCccceEEE
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING--------ALTPTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
|++++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+ ....++... +. ...+++++
T Consensus 102 d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~-~~-----~~~~~~~~ 174 (199)
T 2p5s_A 102 DGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEK-LA-----MTYGALFC 174 (199)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHH-HH-----HHHTCEEE
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHH-HH-----HHcCCeEE
Confidence 9999999999999999888877665443 334789999999999852 111222211 11 11456899
Q ss_pred eecccCCCCHHHHHHHHHHHHhhh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
++||++|.|++++|++|.+.+.++
T Consensus 175 ~~SA~~g~gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 175 ETSAKDGSNIVEAVLHLAREVKKR 198 (199)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHTC-
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999988653
No 53
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.97 E-value=1.5e-30 Score=178.38 Aligned_cols=161 Identities=25% Similarity=0.402 Sum_probs=122.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..++|+++|++|+|||||+++|.+..+. ...++.+ +....+..++ ..+.+|||||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 5689999999999999999999988764 3445554 3344455544 689999999999988888899999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
|+|++++.++.....|+..+... ...+.|+++|+||+|+.......+....+.. ..+++++++||++|.|++++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCCcCccCHHHHHHHHH-----HcCCeEEEEECCCCCCHHHH
Confidence 99999999998888887777654 2357899999999999543222222222211 14568999999999999999
Q ss_pred HHHHHHHHhhhc
Q 029920 170 FDWLVQDIASRI 181 (185)
Q Consensus 170 ~~~l~~~~~~~~ 181 (185)
+++|.+.+.++.
T Consensus 156 ~~~l~~~~~~~~ 167 (170)
T 1g16_A 156 FFTLAKLIQEKI 167 (170)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHHh
Confidence 999999887653
No 54
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.97 E-value=2e-30 Score=181.24 Aligned_cols=162 Identities=19% Similarity=0.359 Sum_probs=127.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+++|++|+|||||+++|.+..+. ...++.+... ..+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 445799999999999999999999988774 4456666443 334443 36899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|
T Consensus 99 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 99 LLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLAD------DLGFEFFEASAKENIN 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHH------HcCCeEEEEECCCCCC
Confidence 9999999999999888887776554 23579999999999986532 2222222211 1456899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
+++++++|.+.+.++.
T Consensus 172 i~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 172 VKQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 55
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=8.3e-30 Score=179.11 Aligned_cols=165 Identities=20% Similarity=0.229 Sum_probs=122.9
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcC--eEEEEEEcCCchhhHH-HHHhhhcC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQK--YTLNIWDVGGQRTIRS-YWRNYFEQ 83 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~--~~~~~~D~~g~~~~~~-~~~~~~~~ 83 (185)
.......++|+++|++|||||||+++|.+.... ...+ +.......+.+++ +.+.+|||+|++.+.. ++..+++.
T Consensus 17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~ 96 (195)
T 3cbq_A 17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT 96 (195)
T ss_dssp -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence 334567899999999999999999999865442 2222 2234444555655 5788999999987654 77788899
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeeccc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+|++++|||++++.+|..+..|+..+.......+.|+++|+||+|+.+.. ..++... +. ...+++++++||+
T Consensus 97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~a-----~~~~~~~~e~Sa~ 170 (195)
T 3cbq_A 97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH-LA-----GTLSCKHIETSAA 170 (195)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHH-HH-----HHTTCEEEEEBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHH-HH-----HHhCCEEEEEcCC
Confidence 99999999999999999999998887665444579999999999996532 2223222 11 1134689999999
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 029920 162 TGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (185)
+|.|++++|+++++.+.+.
T Consensus 171 ~~~~v~~lf~~l~~~i~~~ 189 (195)
T 3cbq_A 171 LHHNTRELFEGAVRQIRLR 189 (195)
T ss_dssp TTBSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 56
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=4.7e-30 Score=177.61 Aligned_cols=163 Identities=17% Similarity=0.276 Sum_probs=130.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i 85 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL 85 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence 567899999999999999999999987664 4455555433 3345554 57899999999999888999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|++++.++..+..|+..++......+.|+++|+||+|+.+.. ...+... +. ...+++++++||++|.|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~gv 159 (181)
T 2fn4_A 86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA-FG-----ASHHVAYFEASAKLRLNV 159 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHTTCEEEECBTTTTBSH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHH-HH-----HHcCCeEEEecCCCCCCH
Confidence 999999999999999998888776555689999999999986532 2222222 11 114668999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
++++++|.+.+.+..
T Consensus 160 ~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 160 DEAFEQLVRAVRKYQ 174 (181)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999886643
No 57
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.97 E-value=9.1e-30 Score=178.40 Aligned_cols=162 Identities=25% Similarity=0.358 Sum_probs=122.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+++|++|+|||||+++|.+..+. ...++.+. ....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 556799999999999999999999988774 34555553 344455555 6899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++..... ....+.+++++||++|.|
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFA-----QQITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH-----HTSTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH-----HhcCCCeEEEEeCCCCCC
Confidence 9999999999999887776655433 34579999999999986432 222222211 111367899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
+++++++|.+.+.++
T Consensus 177 i~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 177 VDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988764
No 58
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-29 Score=178.64 Aligned_cols=161 Identities=19% Similarity=0.347 Sum_probs=127.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+|+|++|+|||||+++|.+..+. ...++.+... ..+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 346799999999999999999999998874 4556666443 334444 36899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 157 (203)
T 1zbd_A 85 ILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLAD------HLGFEFFEASAKDNIN 157 (203)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHH------HCCCeEEEEECCCCCC
Confidence 9999999999999888887776554 23579999999999996542 2222222211 1356899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.++
T Consensus 158 i~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 158 VKQTFERLVDVICEK 172 (203)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 59
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5e-30 Score=180.20 Aligned_cols=164 Identities=22% Similarity=0.315 Sum_probs=126.7
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
....+.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..++ ..+.+|||||++. ...+..+++.+|+
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 33567899999999999999999999988774 44556554332 244444 6799999999987 7778888999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|||++++++++.+..|+..+.......+.|+++|+||+|+.+. ...++...... ..+++++++||++|.
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~g~ 175 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT------ELACAFYECSACTGE 175 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSEEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHH------HhCCeEEEECCCcCC
Confidence 9999999999999998888888776544568999999999998653 22233222111 145689999999999
Q ss_pred -CHHHHHHHHHHHHhhhc
Q 029920 165 -GLLEGFDWLVQDIASRI 181 (185)
Q Consensus 165 -~i~~l~~~l~~~~~~~~ 181 (185)
|++++|++|.+.+.++.
T Consensus 176 ~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 176 GNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhhc
Confidence 99999999999887654
No 60
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.97 E-value=4.4e-30 Score=176.14 Aligned_cols=160 Identities=23% Similarity=0.301 Sum_probs=119.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+++|++|+|||||++++.+..+. ...++.+... ..+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 456799999999999999999999988764 4556665433 3444443 6889999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 155 (170)
T 1z08_A 83 ILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESYAE------SVGAKHYHTSAKQNKG 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEEBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCeEEEecCCCCCC
Confidence 9999999999999988887776543 2347999999999998653 22333332211 1456899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
+++++++|.+.+.+
T Consensus 156 i~~l~~~l~~~~~~ 169 (170)
T 1z08_A 156 IEELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 61
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.97 E-value=9.1e-30 Score=174.47 Aligned_cols=160 Identities=23% Similarity=0.313 Sum_probs=126.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+... ..+...+ ..+.+|||||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 356799999999999999999999988864 4566666443 3344444 7899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.++.....|+..+... ..++.|+++|+||+|+.+... .++...... ..+.+++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 155 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYAD------SIHAIFVETSAKNAIN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHH------HTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHH------HcCCEEEEEeCCCCcC
Confidence 9999999999999888777776553 346799999999999865322 222222111 1457899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
+++++++|.+.+.+
T Consensus 156 i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 156 INELFIEISRRIPS 169 (170)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987643
No 62
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.8e-30 Score=181.76 Aligned_cols=162 Identities=19% Similarity=0.365 Sum_probs=127.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..+||+|+|++|+|||||+++|.+..+. ...++.+ +....+.. ....+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 456799999999999999999999987764 3444444 33334433 458899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAE------QLGFDFFEASAKENIS 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEECCCCCC
Confidence 9999999999999888877776553 34579999999999985432 2222222111 1456899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|++|.+.+.++.
T Consensus 173 i~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 173 VRQAFERLVDAICDKM 188 (191)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999987764
No 63
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.97 E-value=6.9e-30 Score=178.45 Aligned_cols=161 Identities=19% Similarity=0.339 Sum_probs=124.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhH-HHHHhhhcCCCE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIR-SYWRNYFEQTDG 86 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~-~~~~~~~~~~d~ 86 (185)
..+.++|+++|++|+|||||+++|.+..+. ...++.+ +....+..++ ..+.+|||||++.+. ..+..+++.+|+
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ 96 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHA 96 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCE
Confidence 456799999999999999999999987775 3445555 3444556655 689999999999988 788899999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCC-
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG- 163 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~- 163 (185)
+++|+|++++.++..+..|+..+.......+.|+++|+||+|+.+.. ..++... +.. ..+++++++||+++
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~-----~~~~~~~~~Sa~~~~ 170 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQK-FAD-----THSMPLFETSAKNPN 170 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHH-HHH-----HTTCCEEECCSSSGG
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHH-HHH-----HcCCEEEEEeCCcCC
Confidence 99999999999999999888888776555689999999999986432 2222222 211 14568999999999
Q ss_pred --CCHHHHHHHHHHHHhh
Q 029920 164 --EGLLEGFDWLVQDIAS 179 (185)
Q Consensus 164 --~~i~~l~~~l~~~~~~ 179 (185)
.|++++|++|.+.+.+
T Consensus 171 ~~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 171 DNDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GGSCHHHHHHHHC-----
T ss_pred cccCHHHHHHHHHHHHhh
Confidence 9999999999887654
No 64
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=1.8e-30 Score=183.25 Aligned_cols=163 Identities=17% Similarity=0.201 Sum_probs=124.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-E--EEcCeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-V--TYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~--~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
...+.+||+++|++|+|||||+++|.+..+. .+.++.+..... + ....+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 3567899999999999999999999988775 344555533322 2 23458899999999999988899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|||++++.+++.+..|+..+.......++|+++|+||+|+.+... ..+..... ...+++++++||++|.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~Sa~~~~~ 173 (201)
T 3oes_A 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLA------ESWGATFMESSARENQL 173 (201)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHH------HHHTCEEEECCTTCHHH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHH------HHhCCeEEEEeCCCCCC
Confidence 99999999999999999988887765566899999999999864322 22222111 11456899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.+.
T Consensus 174 v~~l~~~l~~~i~~~ 188 (201)
T 3oes_A 174 TQGIFTKVIQEIARV 188 (201)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999988654
No 65
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.97 E-value=7.6e-30 Score=178.75 Aligned_cols=162 Identities=18% Similarity=0.312 Sum_probs=127.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+|+|++|+|||||+++|.+..+. ...++.+... ..+..+ ...+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 455799999999999999999999988775 3455655433 333443 47899999999999999999999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+... ....+...... ..+++++++||++|.|
T Consensus 102 i~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~g 174 (193)
T 2oil_A 102 LLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAE------NNGLLFLETSALDSTN 174 (193)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHH------HTTCEEEEECTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence 9999999999999888888777654 2357999999999998643 22233322211 1456899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
+++++++|.+.+.++.
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 175 VELAFETVLKEIFAKV 190 (193)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887653
No 66
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.97 E-value=2.2e-30 Score=177.21 Aligned_cols=159 Identities=16% Similarity=0.281 Sum_probs=125.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+++|++|+|||||+++|.+..+. .+.++.+ +....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 2 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 2 SEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred CceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 356899999999999999999999987764 4455554 4444555554 6899999999999888888999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++....|+..+.... .+.|+++|+||+|+.+. ...++...... ..+++++++||+++.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~~ 153 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAK------RLKLRFYRTSVKEDLN 153 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHH------HcCCeEEEEecCCCCC
Confidence 99999999999998888887776653 57999999999998643 22333332221 1456899999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029920 166 LLEGFDWLVQDIAS 179 (185)
Q Consensus 166 i~~l~~~l~~~~~~ 179 (185)
+++++++|.+.+.+
T Consensus 154 i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 154 VSEVFKYLAEKHLQ 167 (168)
T ss_dssp SHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988754
No 67
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.97 E-value=6.6e-30 Score=174.51 Aligned_cols=159 Identities=18% Similarity=0.267 Sum_probs=125.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.++|+++|++|+|||||++++.++.+. .+.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 4689999999999999999999887764 344554432 33445554 4699999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|++++.+++....++..+.......+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE------EWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHH------HHTSCEEEECTTCHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHH------HhCCCEEEecCCCCcCHHH
Confidence 9999999999999988888776555689999999999985432 2222222111 1356799999999999999
Q ss_pred HHHHHHHHHhh
Q 029920 169 GFDWLVQDIAS 179 (185)
Q Consensus 169 l~~~l~~~~~~ 179 (185)
++++|.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 68
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=2.3e-30 Score=184.43 Aligned_cols=163 Identities=17% Similarity=0.206 Sum_probs=123.0
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEE-EEE--cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKT-VTY--QKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~-~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
......+||+++|++|+|||||+++|.+..+. .+.+|.+..... +.. ..+.+.+|||||++.+...+..+++.+|+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 34566799999999999999999999988775 446676654432 223 34789999999999999999999999999
Q ss_pred EEEEEeCCCcccHHH-HHHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCcc
Q 029920 87 LVWVVDSSDLRRLDD-CKMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTR 151 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~ 151 (185)
+++|||+++++++.. ...|+..+... .++.|+++|+||+|+.+. ...++..... ...
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~ 173 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIA------KQL 173 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH------HHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHH------HHc
Confidence 999999999999998 46666665443 357999999999998642 2222222211 114
Q ss_pred ce-EEEeecccCCCC-HHHHHHHHHHHHhhhc
Q 029920 152 HW-KIVGCSAYTGEG-LLEGFDWLVQDIASRI 181 (185)
Q Consensus 152 ~~-~~~~~Sa~~~~~-i~~l~~~l~~~~~~~~ 181 (185)
++ +++++||++|.| ++++|+++.+.+.+..
T Consensus 174 ~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 174 GAEIYLEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred CCCEEEEeccCCCcccHHHHHHHHHHHHhccC
Confidence 55 899999999998 9999999999887654
No 69
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=1.8e-29 Score=178.59 Aligned_cols=161 Identities=22% Similarity=0.387 Sum_probs=128.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+|+|++|+|||||+++|.+..+. .+.++.+ +....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 456799999999999999999999988775 3445555 3444555655 5899999999999998899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ..++...... ..+++++++||++|.|
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~g~g 157 (206)
T 2bcg_Y 85 IIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD------ANKMPFLETSALDSTN 157 (206)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHH------HTTCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCeEEEEeCCCCCC
Confidence 9999999999999988888777554 23579999999999997532 2222222211 1456899999999999
Q ss_pred HHHHHHHHHHHHhhh
Q 029920 166 LLEGFDWLVQDIASR 180 (185)
Q Consensus 166 i~~l~~~l~~~~~~~ 180 (185)
++++|++|.+.+.+.
T Consensus 158 i~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 158 VEDAFLTMARQIKES 172 (206)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988654
No 70
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=7.9e-30 Score=179.25 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=125.6
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
+.+....++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 2 m~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 81 (199)
T 2gf0_A 2 MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGH 81 (199)
T ss_dssp ---CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCS
T ss_pred CccCCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCC
Confidence 344567899999999999999999999987765 44556554333 23333 358999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++|+|++++.++.....++..+..... ..+.|+++|+||+|+..... ..+... +.. ..+++++++||++|
T Consensus 82 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~-----~~~~~~~~~Sa~~~ 155 (199)
T 2gf0_A 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQA-VAQ-----EWKCAFMETSAKMN 155 (199)
T ss_dssp EEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHH-HHH-----HHTCEEEECBTTTT
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHH-HHH-----HhCCeEEEEecCCC
Confidence 99999999999999888877666554322 24689999999999875322 222222 111 14568999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|+++++++|.+.+.++
T Consensus 156 ~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 156 YNVKELFQELLTLETRR 172 (199)
T ss_dssp BSHHHHHHHHHHHCSSS
T ss_pred CCHHHHHHHHHHHHhhh
Confidence 99999999999987654
No 71
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=180.17 Aligned_cols=162 Identities=22% Similarity=0.344 Sum_probs=122.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
.+..++|+|+|++|+|||||+++|.+..+. ...++.+ +....+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 456799999999999999999999988774 3445544 4445556665 7899999999998888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|++++.+++.+..|+..+... ...+.|+++|+||+|+... ....+..... ...+++++++||++|.|
T Consensus 102 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~------~~~~~~~~~~SA~~g~g 174 (200)
T 2o52_A 102 LLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFA------QENELMFLETSALTGEN 174 (200)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999999999988888777554 2357999999999998543 2223332221 11457899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|++|.+.+.++.
T Consensus 175 i~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 175 VEEAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999886543
No 72
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=3.9e-29 Score=177.52 Aligned_cols=162 Identities=16% Similarity=0.193 Sum_probs=119.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC--cccccCcc--eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTD 85 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d 85 (185)
....+||+++|++|+|||||+++|.+... ....++.+ +....+.+++ +.+.+|||+|.+. ...+...+++.+|
T Consensus 34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~ 113 (211)
T 2g3y_A 34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD 113 (211)
T ss_dssp -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence 45679999999999999999999997544 22222333 3344556665 4678999999876 4556677788999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+. ....+.. .+ +...+++++++||++|
T Consensus 114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~-~~-----a~~~~~~~~e~SAk~g 187 (211)
T 2g3y_A 114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGR-AC-----AVVFDCKFIETSAAVQ 187 (211)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHH-HH-----HHHHTCEEEECBTTTT
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHH-HH-----HHHcCCEEEEEeCCCC
Confidence 99999999999999999888777765434457999999999998642 2222211 11 1114568999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|++++|++|.+.+..+
T Consensus 188 ~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 188 HNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987543
No 73
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=7.4e-30 Score=181.25 Aligned_cols=163 Identities=24% Similarity=0.390 Sum_probs=125.4
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.....++|+|+|++|+|||||+++|.+..+. ...++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 95 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMG 95 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCE
Confidence 3456799999999999999999999987764 4445555 4445566666 689999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.......+....+.. ..+++++++||++|.|+
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDMETRVVTADQGEALAK-----ELGIPFIESSAKNDDNV 169 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTCSSCCSCHHHHHHHHH-----HHTCCEEECBTTTTBSS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCcccccCHHHHHHHHH-----HcCCEEEEEeCCCCCCH
Confidence 99999999999998888887776554 2346899999999999533222222221211 13457999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029920 167 LEGFDWLVQDIASR 180 (185)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (185)
++++++|.+.+.++
T Consensus 170 ~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 170 NEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988664
No 74
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.97 E-value=1.1e-29 Score=175.45 Aligned_cols=161 Identities=20% Similarity=0.337 Sum_probs=125.5
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.+.+.++|+++|++|+|||||+++|.+..+. ...++.+ +....+..++ ..+.+|||||++.+...+..+++.+|+
T Consensus 10 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 89 (179)
T 2y8e_A 10 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTV 89 (179)
T ss_dssp --CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSE
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCE
Confidence 3456799999999999999999999977764 3445555 3344455555 689999999999999999999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|+|++++.++.....|+..+... ...+.|+++|+||+|+.+.. ...+...... ..+++++++||++|.
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~ 162 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTE-RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK------ELNVMFIETSAKAGY 162 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHH-HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHH------HHTCEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccCcCCHHHHHHHHH------HcCCeEEEEeCCCCC
Confidence 99999999999999988888877654 23579999999999986432 2223222211 145689999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
|+++++++|.+.+.+
T Consensus 163 ~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 163 NVKQLFRRVAAALPG 177 (179)
T ss_dssp SHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987654
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.9e-29 Score=171.94 Aligned_cols=159 Identities=18% Similarity=0.325 Sum_probs=124.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.++|+++|++|+|||||++++.+..+. ...++.+.. ...+..++ ..+.+|||||++.+...+..++..+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 3589999999999999999999887764 344444433 23344444 5689999999999888999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
+|++++.++.....|+..+.......+.|+++|+||+|+.+... .++...... ..+++++++||++|.|++++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~l 155 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLAR------SYGIPYIETSAKTRQGVEDA 155 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHH------HHTCCEEEECTTTCTTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHH------HcCCeEEEecCCCCCCHHHH
Confidence 99999999999888888776655445799999999999865332 223222211 14567999999999999999
Q ss_pred HHHHHHHHhh
Q 029920 170 FDWLVQDIAS 179 (185)
Q Consensus 170 ~~~l~~~~~~ 179 (185)
+++|.+.+.+
T Consensus 156 ~~~l~~~~~~ 165 (166)
T 2ce2_X 156 FYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 76
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=5.9e-30 Score=182.57 Aligned_cols=165 Identities=20% Similarity=0.272 Sum_probs=125.7
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEE--c-C--eEEEEEEcCCchhhHHHHHhhhcC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTY--Q-K--YTLNIWDVGGQRTIRSYWRNYFEQ 83 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~--~-~--~~~~~~D~~g~~~~~~~~~~~~~~ 83 (185)
+......+||+++|++|+|||||+++|.+..+. .+.++.+........ . + ..+.+|||||++.+...+..++..
T Consensus 5 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 84 (218)
T 4djt_A 5 MERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIG 84 (218)
T ss_dssp -----CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cccccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhc
Confidence 344667899999999999999999999987764 445666655544433 1 1 789999999999988888899999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeeccc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+|++++|+|++++.+++....|+..+... ...+.|+++|+||+|+.+.. .......... ..+++++++||+
T Consensus 85 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~ 157 (218)
T 4djt_A 85 ASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEVLK------GKNYEYFEISAK 157 (218)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHH-HCSSSCEEEEEECTTCC----CCHHHHHHHTT------TCCCEEEEEBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHH------HcCCcEEEEecC
Confidence 99999999999999999888877776554 33458999999999986542 2222222221 256789999999
Q ss_pred CCCCHHHHHHHHHHHHhhhc
Q 029920 162 TGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~ 181 (185)
+|.|++++|++|.+.+.+..
T Consensus 158 ~g~gv~~l~~~l~~~~~~~~ 177 (218)
T 4djt_A 158 TAHNFGLPFLHLARIFTGRP 177 (218)
T ss_dssp TTBTTTHHHHHHHHHHHCCT
T ss_pred CCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887643
No 77
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.97 E-value=1.1e-29 Score=175.83 Aligned_cols=164 Identities=20% Similarity=0.314 Sum_probs=115.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEc---CeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQ---KYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~---~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
...+.++|+++|++|+|||||+++|.+..+. .+.++.+ +....+..+ ...+.+|||||++.+...+..+++.+|
T Consensus 4 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 83 (182)
T 1ky3_A 4 RKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGAD 83 (182)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCC
T ss_pred ccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCC
Confidence 3567899999999999999999999988764 3445544 444445444 378999999999999999999999999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCC---CHHHHHHhcCcccccCccceEEEeec
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGAL---TPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
++++|+|++++.+++....|+..+..... ..+.|+++|+||+|+.... ...+...... .....+++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~-----~~~~~~~~~~S 158 (182)
T 1ky3_A 84 CCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAK-----SLGDIPLFLTS 158 (182)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHH-----HTTSCCEEEEB
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHH-----hcCCCeEEEEe
Confidence 99999999999999998888887765432 2578999999999985321 2222222111 01456799999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|.|+++++++|.+.+.++
T Consensus 159 a~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 159 AKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999988654
No 78
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.97 E-value=4e-30 Score=181.85 Aligned_cols=161 Identities=16% Similarity=0.192 Sum_probs=96.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC--CCc-ccccCcc--eEEEEEEEc----CeEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE--DTS-VISPTLG--FNIKTVTYQ----KYTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~--~~~-~~~~t~~--~~~~~~~~~----~~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
...++|+++|++|+|||||+++|.+. .+. .+.+|.+ +....+.++ ...+.+|||||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 45789999999999999999999988 553 4556665 444455665 46899999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCC-C--CCHHHHHHhcCcccccCccceEEEeec
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDING-A--LTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
|++++|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.. . ...++....... .+++++++|
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~------~~~~~~~~S 171 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATT------NTLDFFDVS 171 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHH------TTCEEEECC
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHH------cCCEEEEec
Confidence 999999999999999999988888766532 25799999999999865 2 223333332211 457899999
Q ss_pred ccC-CCCHHHHHHHHHHHHhhh
Q 029920 160 AYT-GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~-~~~i~~l~~~l~~~~~~~ 180 (185)
|++ |.|++++|++|.+.+.+.
T Consensus 172 a~~~~~gi~~l~~~i~~~~~~~ 193 (208)
T 2yc2_C 172 ANPPGKDADAPFLSIATTFYRN 193 (208)
T ss_dssp C-------CHHHHHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHHH
Confidence 999 999999999999987654
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.97 E-value=1.4e-29 Score=179.03 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=126.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE--EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI--KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+|+|++|+|||||+++|.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 567899999999999999999999988764 4455655433 3344443 6899999999999888888899999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTG 163 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 163 (185)
++|+|++++.++.....|+..+..... ..+.|+++|+||+|+.... ..++...... ....++++++||++|
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~g 159 (207)
T 1vg8_A 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY-----SKNNIPYFETSAKEA 159 (207)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHH-----HTTSCCEEECBTTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHH-----hcCCceEEEEeCCCC
Confidence 999999999999988888777765432 2468999999999987433 2222222211 015668999999999
Q ss_pred CCHHHHHHHHHHHHhhh
Q 029920 164 EGLLEGFDWLVQDIASR 180 (185)
Q Consensus 164 ~~i~~l~~~l~~~~~~~ 180 (185)
.|+++++++|.+.+.++
T Consensus 160 ~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 160 INVEQAFQTIARNALKQ 176 (207)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 80
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.97 E-value=5.4e-29 Score=173.93 Aligned_cols=162 Identities=18% Similarity=0.297 Sum_probs=116.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.++.+.. ...+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 446799999999999999999999987664 334444433 23445554 56999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|+|++++.++..+..|+..+.......+.|+++|+||+|+.... ..++....... .+++++++||++|.|++
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~Sa~~~~gi~ 171 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKS------YGIPFIETSAKTRQGVE 171 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHH------HTCCEEECCTTTCTTHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHH------cCCeEEEEeCCCCCCHH
Confidence 999999999999888887777665444579999999999986532 33333322211 34579999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
+++++|.+.+.+.
T Consensus 172 ~l~~~l~~~~~~~ 184 (190)
T 3con_A 172 DAFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 81
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=181.05 Aligned_cols=162 Identities=20% Similarity=0.356 Sum_probs=123.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+|+|++|+|||||+++|.+..+. ...++.+ +....+..++ +.+.+|||||++.+...+..+++.+|++
T Consensus 10 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 89 (223)
T 3cpj_B 10 YDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGA 89 (223)
T ss_dssp CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEE
T ss_pred CCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEE
Confidence 466799999999999999999999988775 3445554 4445566666 6899999999999998899999999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|||++++.+++.+..|+..+... ...+.|+++|+||+|+... ....+...... ..+++++++||++|.|
T Consensus 90 ilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~~~Sa~~~~g 162 (223)
T 3cpj_B 90 LIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ------ENQLLFTETSALNSEN 162 (223)
T ss_dssp EEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHH------HTTCEEEECCCC-CCC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHH------HcCCEEEEEeCCCCCC
Confidence 9999999999999988888777554 2357899999999998643 22233322211 1457899999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q 029920 166 LLEGFDWLVQDIASRI 181 (185)
Q Consensus 166 i~~l~~~l~~~~~~~~ 181 (185)
++++|++|.+.+.++.
T Consensus 163 i~~l~~~l~~~i~~~~ 178 (223)
T 3cpj_B 163 VDKAFEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 82
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=1.5e-29 Score=176.65 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=120.4
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
.......+||+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++ +.+.+|||||++.+... ..+++.+|
T Consensus 15 ~~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~ 93 (187)
T 3c5c_A 15 YFQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAH 93 (187)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCS
T ss_pred HhCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCC
Confidence 344667899999999999999999999988764 4566666443 2334443 68899999999887764 56889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccc--cCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecc-
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEER--LSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSA- 160 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa- 160 (185)
++++|||++++++++.+..|+..+..... ..+.|+++|+||+|+.+. ...++...... ..+++++++||
T Consensus 94 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~e~Sa~ 167 (187)
T 3c5c_A 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG------RFGCLFFEVSAC 167 (187)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH------HHTCEEEECCSS
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH------HcCCcEEEEeec
Confidence 99999999999999999988888766532 257999999999998543 22233322221 14568999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++|.|++++|++|.+.+.+
T Consensus 168 ~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 168 LDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SCSHHHHHHHHHHHHHHHC
T ss_pred CccccHHHHHHHHHHHHhh
Confidence 8999999999999998754
No 83
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-29 Score=172.88 Aligned_cols=160 Identities=19% Similarity=0.260 Sum_probs=122.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
+.++|+++|++|+|||||+++|.+..+. .+.++.+.... .+..++ ..+.+|||||++.+...+..+++.+|++++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v 81 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV 81 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEE
Confidence 5689999999999999999999988764 44555554333 333333 5799999999999999999999999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
+|++++.+++....++..+.... ..++.|+++|+||+|+.+... ..+... +. ...+++++++||++|.|++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~-~~-----~~~~~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 82 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA-LA-----RTWKCAFMETSAKLNHNVK 155 (172)
T ss_dssp EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHH-HH-----HHHTCEEEECBTTTTBSHH
T ss_pred EECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHH-HH-----HHhCCeEEEecCCCCcCHH
Confidence 99999999988888777665542 224789999999999864322 222221 11 1145689999999999999
Q ss_pred HHHHHHHHHHhhh
Q 029920 168 EGFDWLVQDIASR 180 (185)
Q Consensus 168 ~l~~~l~~~~~~~ 180 (185)
+++++|.+.+.++
T Consensus 156 ~l~~~l~~~~~~~ 168 (172)
T 2erx_A 156 ELFQELLNLEKRR 168 (172)
T ss_dssp HHHHHHHHTCCSS
T ss_pred HHHHHHHHHHhhh
Confidence 9999999877654
No 84
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.3e-29 Score=175.04 Aligned_cols=158 Identities=20% Similarity=0.231 Sum_probs=121.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 346799999999999999999999987764 4455555332 3445554 78999999999999989999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHHHHHHhcCcccccCccce
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL--------------TPTEIAKVLNLEAMDKTRHW 153 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~ 153 (185)
+|+|+++++++.... .|+..+... .++.|+++|+||+|+.+.. ..++..... ...+.
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~~ 166 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA------KEIGA 166 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH------HHHTC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH------HHcCC
Confidence 999999999999887 565555443 2479999999999997532 111111111 11233
Q ss_pred -EEEeecccCCCCHHHHHHHHHHHHh
Q 029920 154 -KIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 154 -~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+++++||++|.|++++|++|.+.+.
T Consensus 167 ~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 167 CCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp SCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 7999999999999999999998764
No 85
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.96 E-value=4.1e-30 Score=183.88 Aligned_cols=162 Identities=17% Similarity=0.310 Sum_probs=128.7
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcceEEEEEE--E--cCeEEEEEEcCCchhhHHHHHhhhcCCCE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLGFNIKTVT--Y--QKYTLNIWDVGGQRTIRSYWRNYFEQTDG 86 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 86 (185)
.....+||+++|++|||||||++++..+. ...+.++.+.+..... . ....+.+|||||++.+...+..+++.+|+
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 90 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQC 90 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCE
Confidence 45677999999999999999999955444 4556777775555433 3 34789999999999998888999999999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+.....+.. .+....+++++++||++|.|+
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi 162 (221)
T 3gj0_A 91 AIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI------VFHRKKNLQYYDISAKSNYNF 162 (221)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSSCGGGC------CHHHHHTCEEEECBGGGTBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccccHHHH------HHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999988888877653 479999999999997643322111 112225678999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
+++|++|.+.+.+..
T Consensus 163 ~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 163 EKPFLWLARKLIGDP 177 (221)
T ss_dssp THHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999886653
No 86
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=7e-29 Score=174.85 Aligned_cols=163 Identities=16% Similarity=0.191 Sum_probs=116.8
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
.....+.++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++ +.+.+|||||++.+...+..++..+|
T Consensus 14 ~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp ------CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 344677899999999999999999999988764 4455655333 3345555 57789999999999888888999999
Q ss_pred EEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC--------------CHHHHHHhcCcccccCc
Q 029920 86 GLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL--------------TPTEIAKVLNLEAMDKT 150 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~ 150 (185)
++++|||++++.++..+. .|+..+... .++.|+++|+||+|+.... ..++..... ..
T Consensus 94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~ 165 (201)
T 2q3h_A 94 IFLLCFSVVSPSSFQNVSEKWVPEIRCH--CPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLA------EE 165 (201)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH------HH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHH------Hh
Confidence 999999999999999887 565555443 2479999999999986421 111111111 11
Q ss_pred cc-eEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 151 RH-WKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 151 ~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
.+ .+++++||++|.|++++|++|.+.+.+.
T Consensus 166 ~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 166 IKAASYIECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp HTCSEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence 23 3899999999999999999999987653
No 87
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.96 E-value=9.7e-29 Score=174.33 Aligned_cols=166 Identities=18% Similarity=0.255 Sum_probs=120.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....+||+++|++|+|||||++++.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 356789999999999999999999987764 3445554322 3345554 58999999999999988899999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccce-EEEeec
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRHW-KIVGCS 159 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~~-~~~~~S 159 (185)
+|+|+++++++......|...+.. ..++.|+++|+||+|+.......+....... ..+....+. +++++|
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 180 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKH-FCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECS 180 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH-HSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEee
Confidence 999999999999885434444333 2247999999999998764221111111000 000111233 799999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q 029920 160 AYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (185)
|++|.|+++++++|.+.+.+
T Consensus 181 A~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 181 AKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999987653
No 88
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.96 E-value=3.1e-29 Score=177.31 Aligned_cols=167 Identities=18% Similarity=0.249 Sum_probs=117.4
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCC
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQT 84 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~ 84 (185)
+.....+.+||+++|++|+|||||++++.++.+. .+.++.+... ..+..++ +.+.+|||||++.+...+..+++.+
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 3444677899999999999999999999977764 4445554322 2334444 5677999999999999999999999
Q ss_pred CEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc---------ccccCccceE
Q 029920 85 DGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL---------EAMDKTRHWK 154 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 154 (185)
|++++|||++++.+++... .|+..+.... .+.|+++|+||+|+.+.....+....... .........+
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 180 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 180 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcE
Confidence 9999999999999999987 4544444332 57999999999998654322221111100 0111112357
Q ss_pred EEeecccCCCCHHHHHHHHHHHH
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
++++||++|.|++++|+++.+.+
T Consensus 181 ~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 181 YLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EEECCTTTCTTHHHHHHHHHHTT
T ss_pred EEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998754
No 89
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=6.5e-29 Score=172.85 Aligned_cols=160 Identities=17% Similarity=0.241 Sum_probs=119.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||+++|.+..+. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 456799999999999999999999988774 34566654332 23333 368999999999999888889999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCccce
Q 029920 89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTRHW 153 (185)
Q Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 153 (185)
+|+|++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. ...++..... ......
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~ 156 (184)
T 1m7b_A 84 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA-----KQIGAA 156 (184)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH-----HHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH-----HHcCCc
Confidence 99999999999988 4555554332 257999999999998642 1112211111 111236
Q ss_pred EEEeeccc-CCCCHHHHHHHHHHHHhh
Q 029920 154 KIVGCSAY-TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 154 ~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 179 (185)
+++++||+ ++.|++++|+.+.+.+.+
T Consensus 157 ~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 157 TYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 89999999 689999999999988754
No 90
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.2e-29 Score=178.31 Aligned_cols=166 Identities=22% Similarity=0.256 Sum_probs=114.5
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEE--E---EcCeEEEEEEcCCchhhHHHH---Hhh
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV--T---YQKYTLNIWDVGGQRTIRSYW---RNY 80 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~--~---~~~~~~~~~D~~g~~~~~~~~---~~~ 80 (185)
...+.++.+||+++|++|+|||||++++.+................+ . .....+.+|||||++.+.... ..+
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 92 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMI 92 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccc
Confidence 34557778999999999999999999998865544332222222211 2 344899999999999887666 788
Q ss_pred hcCCCEEEEEEeCCCc--ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCccccc---Ccc
Q 029920 81 FEQTDGLVWVVDSSDL--RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMD---KTR 151 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~---~~~ 151 (185)
++.+|++++|||++++ +++..+..|+..... ..++.|+++|+||+|+..... .+.+.......... ...
T Consensus 93 ~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 93 FRGTGALIYVIDAQDDYMEALTRLHITVSKAYK--VNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHH--HCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred cccCCEEEEEEECCCchHHHHHHHHHHHHHHHh--cCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999999997 566666666666533 234899999999999865321 11222211111111 126
Q ss_pred ceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 152 HWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 152 ~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
+++++++||++ .|++++|+.+++.+
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred CcceEEEEech-hhHHHHHHHHHHHh
Confidence 78999999999 99999999998865
No 91
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.4e-28 Score=174.25 Aligned_cols=166 Identities=19% Similarity=0.286 Sum_probs=119.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||+++|.+..+. .+.++.+... ..+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 456799999999999999999999988775 3345555333 3345554 68999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc--------cccCccc-eEEEee
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE--------AMDKTRH-WKIVGC 158 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~--------~~~~~~~-~~~~~~ 158 (185)
+|+|++++.++.... .|+..+.. ..++.|+++|+||+|+.......+....+... .+....+ .+++++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKH--FCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHH--HSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHH--hCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999884 44444433 23579999999999986542222111111100 0011122 389999
Q ss_pred cccCCCCHHHHHHHHHHHHhhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
||++|.|+++++++|.+.+.+.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSC
T ss_pred eCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987654
No 92
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=174.66 Aligned_cols=166 Identities=14% Similarity=0.208 Sum_probs=104.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.+..+. .+.++.... ...+..++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 346799999999999999999999988764 344555433 22344444 57999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--------cccccCccce-EEEee
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--------LEAMDKTRHW-KIVGC 158 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~ 158 (185)
+|+|++++.+++.+. .|+..+... .++.|+++|+||+|+.......+...... ...+....+. +++++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 999999999999887 455554432 25799999999999866422211110000 0011111333 89999
Q ss_pred cccCCCCHHHHHHHHHHHHhhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
||++|.|++++|++|.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988654
No 93
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.96 E-value=9.7e-29 Score=170.70 Aligned_cols=163 Identities=18% Similarity=0.164 Sum_probs=119.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccc-cc--CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-SP--TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
..+.++|+++|++|+|||||+++|.+..+... .+ +.......+..++..+.+|||||++.+...+..++..+|++++
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 84 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQVTDIVIL 84 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCCCCCEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHhhCCEEEE
Confidence 46789999999999999999999998877532 22 3334455677788899999999999988888888899999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc-ccccCcc--ceEEEeecccCCCCH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL-EAMDKTR--HWKIVGCSAYTGEGL 166 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~Sa~~~~~i 166 (185)
|+|++++..... ...+... ...+.|+++|+||+|+.+. ..++....+.. ....... ..+++++||++|.|+
T Consensus 85 v~d~~~~~~~~~-~~~l~~~----~~~~~p~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 158 (178)
T 2lkc_A 85 VVAADDGVMPQT-VEAINHA----KAANVPIIVAINKMDKPEA-NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL 158 (178)
T ss_dssp EEETTCCCCHHH-HHHHHHH----GGGSCCEEEEEETTTSSCS-CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred EEECCCCCcHHH-HHHHHHH----HhCCCCEEEEEECccCCcC-CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence 999988433222 2222322 2247899999999999764 33344333322 1122112 378999999999999
Q ss_pred HHHHHHHHHHHhhhc
Q 029920 167 LEGFDWLVQDIASRI 181 (185)
Q Consensus 167 ~~l~~~l~~~~~~~~ 181 (185)
++++++|.+.+....
T Consensus 159 ~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 159 DHLLEMILLVSEMEE 173 (178)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhc
Confidence 999999999876543
No 94
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=6e-29 Score=176.64 Aligned_cols=160 Identities=17% Similarity=0.210 Sum_probs=121.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||+++|.+..+. .+.+|.+... ..+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 457799999999999999999999987764 4456665333 2344444 68999999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCC----------CHHHHHHhcCcccccCccc-eEEE
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGAL----------TPTEIAKVLNLEAMDKTRH-WKIV 156 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~ 156 (185)
+|||++++++++... .|+..+... .++.|+++|+||+|+.+.. ...+..... .. .+ .+++
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~-----~~-~~~~~~~ 157 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRF--APNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELR-----KQ-IGAAAYI 157 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHH-----HH-HTCSEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHH-----HH-cCCceEE
Confidence 999999999999887 555555443 2479999999999986532 122221111 11 23 4899
Q ss_pred eecccCCCCHHHHHHHHHHHHhhh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
++||++|.|++++|++|.+.+.+.
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 158 ECSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred EccCCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999987653
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=2.1e-28 Score=170.03 Aligned_cols=165 Identities=21% Similarity=0.263 Sum_probs=120.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
.+.++|+++|++|+|||||+++|.++.+. .+.++.+... ..+..++ +.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 46799999999999999999999977764 4445554332 2344444 577799999999998888889999999999
Q ss_pred EEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccc-eEEEeec
Q 029920 90 VVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRH-WKIVGCS 159 (185)
Q Consensus 90 v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~S 159 (185)
|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+....... ..+....+ .+++++|
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 160 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHH--STTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred EEECCChhhHHHHHHHHHHHHHHh--CCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence 99999999999887 455555443 237999999999998653211111110000 00111123 3899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|.|++++++++.+.+.+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~ 181 (186)
T 1mh1_A 161 ALTQRGLKTVFDEAIRAVLCP 181 (186)
T ss_dssp TTTCTTHHHHHHHHHHHHSCC
T ss_pred CCCccCHHHHHHHHHHHHhcc
Confidence 999999999999999988654
No 96
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=2.2e-29 Score=174.60 Aligned_cols=158 Identities=16% Similarity=0.230 Sum_probs=109.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-E--EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-T--VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~--~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||++++.+..+. .+.+|.+.... . +......+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 456799999999999999999999987764 33444432211 1 1223466789999999999999999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCC------------HHHHHHhcCcccccCccc-eE
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALT------------PTEIAKVLNLEAMDKTRH-WK 154 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~ 154 (185)
+|+|++++.+++... .|+..+... .++.|+++|+||+|+.+... ..+... +....+ .+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~ 156 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHY--APGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEE------LKKLIGAPA 156 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHH------HHHHHTCSE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHH------HHHHcCCCE
Confidence 999999999999887 455554433 24799999999999865321 111111 111133 38
Q ss_pred EEeecccCCCCHHHHHHHHHHHHh
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
++++||++|.|++++|++|.+.+.
T Consensus 157 ~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 157 YIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 97
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=2.3e-28 Score=173.07 Aligned_cols=160 Identities=17% Similarity=0.242 Sum_probs=119.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEE-EEEEc--CeEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIK-TVTYQ--KYTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~-~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....+||+++|++|+|||||+++|.+..+. .+.+|.+.... .+..+ ...+.+|||||++.+...+..+++.+|+++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 104 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 104 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence 456799999999999999999999988775 34566554332 23333 378999999999999888889999999999
Q ss_pred EEEeCCCcccHHHH-HHHHHHHHhccccCCCeEEEEeecCCCCCC--------------CCHHHHHHhcCcccccCccce
Q 029920 89 WVVDSSDLRRLDDC-KMELDNLLKEERLSGASLLILANKQDINGA--------------LTPTEIAKVLNLEAMDKTRHW 153 (185)
Q Consensus 89 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~~~~~~~ 153 (185)
+|||++++.+++.+ ..|+..+... .++.|+++|+||+|+.+. ...++.... .......
T Consensus 105 lv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~ 177 (205)
T 1gwn_A 105 ICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM-----AKQIGAA 177 (205)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH-----HHHHTCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH-----HHHcCCC
Confidence 99999999999988 4555555433 247999999999998642 111111111 1111235
Q ss_pred EEEeeccc-CCCCHHHHHHHHHHHHhh
Q 029920 154 KIVGCSAY-TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 154 ~~~~~Sa~-~~~~i~~l~~~l~~~~~~ 179 (185)
+++++||+ ++.|++++|+.+.+.+.+
T Consensus 178 ~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 178 TYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 89999999 689999999999988754
No 98
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.96 E-value=2.5e-30 Score=182.16 Aligned_cols=162 Identities=20% Similarity=0.375 Sum_probs=118.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...+||+++|++|+|||||+++|.+..+.. ..++.+ .....+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999999887753 334333 5555666666 68999999999999888889999999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
+|+|++++.+++.+..|+..+... ...+.|+++|+||+|+.+...... .....+....+++++++||++|.|+++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 111 VVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDY----TTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp ECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCS----CC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCH----HHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999998887777554 335799999999999864321110 000111112456799999999999999
Q ss_pred HHHHHHHHHhhh
Q 029920 169 GFDWLVQDIASR 180 (185)
Q Consensus 169 l~~~l~~~~~~~ 180 (185)
+|++|.+.+.++
T Consensus 186 l~~~l~~~l~~~ 197 (199)
T 3l0i_B 186 SFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHTTTTTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=7.6e-29 Score=172.59 Aligned_cols=161 Identities=20% Similarity=0.285 Sum_probs=113.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC--CC-cccccCcceEEEEEEE-------cCeEEEEEEcCCchhhHHHHHhhhcCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE--DT-SVISPTLGFNIKTVTY-------QKYTLNIWDVGGQRTIRSYWRNYFEQTD 85 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~--~~-~~~~~t~~~~~~~~~~-------~~~~~~~~D~~g~~~~~~~~~~~~~~~d 85 (185)
.+||+++|++|||||||+++|++. .+ ..+.+|.+........ ....+.+|||+|++.+...+..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 589999999999999999999985 33 2355666655443321 3578999999999998888888899999
Q ss_pred EEEEEEeCCCc-ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce----EEEeecc
Q 029920 86 GLVWVVDSSDL-RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW----KIVGCSA 160 (185)
Q Consensus 86 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Sa 160 (185)
++++|+|++++ .++..+..|+..+.... ++.|+++|+||+|+.+.............. +....++ +++++||
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Sa 158 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKE-LLNKRGFPAIRDYHFVNA 158 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHH-TTTCTTSCEEEEEEECCT
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHH-HHHhcCCcchhheEEEec
Confidence 99999999987 57888888887775532 479999999999986532221111111111 1111233 4899999
Q ss_pred cCCC-CHHHHHHHHHHHHhh
Q 029920 161 YTGE-GLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~-~i~~l~~~l~~~~~~ 179 (185)
+++. +++++++.+.+.+.+
T Consensus 159 ~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 159 TEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TSCCHHHHHHHHHHHHHHHC
T ss_pred ccCchhHHHHHHHHHHHHhc
Confidence 9997 999999999888765
No 100
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.96 E-value=1.8e-27 Score=166.74 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=114.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCC--cccccCcc--eEEEEEEEcC--eEEEEEEcCCchh-hHHHHHhhhcCCCE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDT--SVISPTLG--FNIKTVTYQK--YTLNIWDVGGQRT-IRSYWRNYFEQTDG 86 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~--~~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 86 (185)
...+||+++|++|+|||||+++|.+... ....++.+ +....+.+++ +.+.+|||+|.+. ...+...+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 5679999999999999999999986432 22222222 3344556665 4668899999766 34455667788999
Q ss_pred EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 87 LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
+++|||++++++|+....|+..+.......+.|+++|+||+|+.... ...+.. .+ +...+++++++||++|.
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~-~~-----a~~~~~~~~e~SA~~g~ 157 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGR-AX-----AVVFDXKFIETSAAVQH 157 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHH-HH-----HHHTTCEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHH-HH-----HHHhCCceEEeccccCC
Confidence 99999999999999988887766554334579999999999985421 221111 11 11145689999999999
Q ss_pred CHHHHHHHHHHHHhh
Q 029920 165 GLLEGFDWLVQDIAS 179 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~ 179 (185)
|++++|+++.+.+..
T Consensus 158 ~v~~lf~~l~~~~~~ 172 (192)
T 2cjw_A 158 NVKELFEGIVRQVRL 172 (192)
T ss_dssp SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998754
No 101
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.95 E-value=5.6e-28 Score=169.34 Aligned_cols=159 Identities=19% Similarity=0.204 Sum_probs=109.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE--EEEEEcCeEEEEEEcCC----------chhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI--KTVTYQKYTLNIWDVGG----------QRTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g----------~~~~~~~~~~ 79 (185)
..+.++|+|+|++|+|||||+++|.+..+ ..+.++.+.+. .....+ ..+.+||||| ++.+...+..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN-DELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET-TTEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEEC-CcEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 45689999999999999999999998874 44445444322 222333 3799999999 6777777788
Q ss_pred hhcCC---CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEE
Q 029920 80 YFEQT---DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 80 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+.+..........+.. .+......+++
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~ 172 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDVQ--MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQ-TLNIDPEDELI 172 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHH--HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHH-HHTCCTTSEEE
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHHH--HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHH-HHcccCCCceE
Confidence 87776 9999999999877766532 1222222 47899999999999765444332222211 11122567899
Q ss_pred eecccCCCCHHHHHHHHHHHHh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
++||++|.|+++++++|.+.+.
T Consensus 173 ~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 173 LFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHT
T ss_pred EEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999998764
No 102
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=3.1e-27 Score=169.73 Aligned_cols=164 Identities=15% Similarity=0.107 Sum_probs=111.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCc------hhh---HHHHHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQ------RTI---RSYWRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~------~~~---~~~~~~~~ 81 (185)
.+.++|+|+|++|+|||||+++|++..+... ..+.......+...+..+.+|||||+ +.. ......+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 106 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALA 106 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhh
Confidence 4679999999999999999999999876411 12334555556667889999999998 331 12234457
Q ss_pred cCCCEEEEEEeCCCcccHH--HHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCccc--eEEE
Q 029920 82 EQTDGLVWVVDSSDLRRLD--DCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKTRH--WKIV 156 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~ 156 (185)
..+|++++|+|++++.++. ....++..+... ..+.|+++|+||+|+.+....... ..... .+....+ ++++
T Consensus 107 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 182 (228)
T 2qu8_A 107 HINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIK--QILDNVKNPIKFS 182 (228)
T ss_dssp TSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHH--HHHHHCCSCEEEE
T ss_pred ccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHH--HHHHhcCCCceEE
Confidence 8889999999999987764 223444444332 237999999999998654332111 11111 1111123 7899
Q ss_pred eecccCCCCHHHHHHHHHHHHhhhc
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
++||++|.|++++|++|.+.+.+..
T Consensus 183 ~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 183 SFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEecccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999886543
No 103
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.95 E-value=1.8e-28 Score=182.52 Aligned_cols=161 Identities=17% Similarity=0.223 Sum_probs=118.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcc----cccCcceEEEEEEEcCeEEEEEEcCCchhhHH---HHHhhhcCCCEEEEE
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSV----ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS---YWRNYFEQTDGLVWV 90 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~~i~v 90 (185)
||+++|+.|+|||||++++.++..+. ..+|.++....+. ..+.+++|||+|++++.. .+..|+++++++++|
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV 79 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYV 79 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEE
Confidence 68999999999999999988776543 4677776665542 348999999999999864 468899999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhcc--ccCCCeEEEEeecCCCCCCCCH----HHHHHhcCcccccC---ccceEEEeeccc
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEE--RLSGASLLILANKQDINGALTP----TEIAKVLNLEAMDK---TRHWKIVGCSAY 161 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Sa~ 161 (185)
||++++ +.+...+|..++... ..++.|+++++||+|+.+.... +++....+.+.+.. ..+++|++|||+
T Consensus 80 ~Ditd~--~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAk 157 (331)
T 3r7w_B 80 IDSQDE--YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIF 157 (331)
T ss_dssp CCCSSC--TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSS
T ss_pred EECCch--HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccC
Confidence 999987 444455554444321 2458999999999999764321 23333332222222 157899999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcc
Q 029920 162 TGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~~~ 182 (185)
+ .|+++.|..+++.+.++.+
T Consensus 158 d-~nV~eAFs~iv~~li~~~~ 177 (331)
T 3r7w_B 158 D-HSIYEAFSRIVQKLIPELS 177 (331)
T ss_dssp S-SHHHHHHHHHHTTSSTTHH
T ss_pred C-CcHHHHHHHHHHHHHhhHH
Confidence 8 5999999999988766543
No 104
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=2.4e-27 Score=163.43 Aligned_cols=151 Identities=21% Similarity=0.333 Sum_probs=110.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCeEEEEEEcCCchhhH----H----HHHhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKYTLNIWDVGGQRTIR----S----YWRNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----~----~~~~~~~ 82 (185)
+..+|+++|++|+|||||+++|.+....... .+.......+.+++..+.+|||||++... . ....+++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 4589999999999999999999987653222 23345556677888899999999986421 1 1224578
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccC
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYT 162 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 162 (185)
.+|++++|+|++++.++.. ..|+..+... ...++|+++|+||+|+..... ........+++++||++
T Consensus 83 ~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-----------~~~~~~~~~~~~~SA~~ 149 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-----------GMSEVNGHALIRLSART 149 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-----------EEEEETTEEEEECCTTT
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-----------hhhhccCCceEEEeCCC
Confidence 9999999999999877653 3455544433 234689999999999843211 11112467899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 029920 163 GEGLLEGFDWLVQDIA 178 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~ 178 (185)
|.|++++|++|.+.+.
T Consensus 150 g~gv~~l~~~l~~~~~ 165 (172)
T 2gj8_A 150 GEGVDVLRNHLKQSMG 165 (172)
T ss_dssp CTTHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHhh
Confidence 9999999999988764
No 105
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.95 E-value=1.6e-27 Score=166.73 Aligned_cols=161 Identities=17% Similarity=0.195 Sum_probs=113.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE-EEEcCeEEEEEEcCC----------chhhHHHHHhhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT-VTYQKYTLNIWDVGG----------QRTIRSYWRNYF 81 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g----------~~~~~~~~~~~~ 81 (185)
....++|+++|++|+|||||+++|.+.......++.+.+... ....+..+.+||||| ++.+...+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 456789999999999999999999998876666665533322 122345788999999 666677777777
Q ss_pred cCC---CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEee
Q 029920 82 EQT---DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 82 ~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
+.+ |++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+........+.... .+.....++++++
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 173 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKS---LNIPFTIVLTKMDKVKMSERAKKLEEHRK-VFSKYGEYTIIPT 173 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHH-HHHSSCCSCEEEC
T ss_pred hcCcCceEEEEEecCCCCCCHHHH--HHHHHHHH---cCCCEEEEEEChhcCChHHHHHHHHHHHH-HHhhcCCCceEEE
Confidence 665 999999999875443322 11222222 26999999999999765444333332221 1222245689999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|+++++++|.+.+.+
T Consensus 174 Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 174 SSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHC-
T ss_pred ecCCCCCHHHHHHHHHHHhhc
Confidence 999999999999999998765
No 106
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.7e-27 Score=162.98 Aligned_cols=148 Identities=26% Similarity=0.299 Sum_probs=106.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--C
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE--Q 83 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 83 (185)
+.++|+++|++|+|||||+++|.+..+. ...+ +.......+.+++..+.+|||||++.+. .....++. .
T Consensus 2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 3589999999999999999999987653 1222 3334455567778999999999987653 34455554 8
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEeec
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+|++++|+|+++.++ ...|+..+.. .+.|+++|+||+|+.... ...++.. ..+++++++|
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~---------~~~~~~~~~S 145 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEK---------ILGVKVVPLS 145 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCCCHHHHHH---------HHTSCEEECB
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhhHHHHHHH---------HhCCCEEEEE
Confidence 999999999987543 3344444433 369999999999974321 1111111 1345799999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 029920 160 AYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~ 178 (185)
|++|.|++++|+++.+.+.
T Consensus 146 A~~~~~v~~l~~~l~~~~~ 164 (165)
T 2wji_A 146 AAKKMGIEELKKAISIAVK 164 (165)
T ss_dssp GGGTBSHHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHhh
Confidence 9999999999999988763
No 107
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.91 E-value=1.2e-29 Score=179.27 Aligned_cols=168 Identities=20% Similarity=0.286 Sum_probs=120.3
Q ss_pred HHHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEE-EEEEE--cCeEEEEEEcCCchhhHHHHHhhhc
Q 029920 7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNI-KTVTY--QKYTLNIWDVGGQRTIRSYWRNYFE 82 (185)
Q Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~-~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~ 82 (185)
+++.....+.++|+++|++|+|||||+++|.++.+. ...++.+... ..+.. ..+.+.+|||||++.+...+..+++
T Consensus 21 m~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 100 (204)
T 3th5_A 21 MENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP 100 (204)
Confidence 344444577899999999999999999999987764 3334443222 12222 3467779999999999999999999
Q ss_pred CCCEEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHH---------HHHhcCcccccCccc
Q 029920 83 QTDGLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTE---------IAKVLNLEAMDKTRH 152 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~---------~~~~~~~~~~~~~~~ 152 (185)
.+|++++|+|++++.++.... .|+..+... .++.|+++|+||+|+.+.....+ ....... .+....+
T Consensus 101 ~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~--~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~ 177 (204)
T 3th5_A 101 QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL-AMAKEIG 177 (204)
Confidence 999999999999999998887 444444332 23789999999999865422111 1111111 1222234
Q ss_pred e-EEEeecccCCCCHHHHHHHHHHHH
Q 029920 153 W-KIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 153 ~-~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
. +++++||++|.|+++++++|.+.+
T Consensus 178 ~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 178 AVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 4 899999999999999999988754
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=3.4e-27 Score=176.49 Aligned_cols=165 Identities=20% Similarity=0.268 Sum_probs=121.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc----ccccCcceEEEEEEE-cCeEEEEEEcCCchhh-----HHHHHhhhcCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS----VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTI-----RSYWRNYFEQT 84 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 84 (185)
..+||+++|++|+|||||++++.++... .+.+|.+.....+.+ ++..+.+|||||++.+ ...+..+++.+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 4689999999999999999999887443 456788877777775 6789999999999988 56778888999
Q ss_pred CEEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHH---HHHhcCcccccCcc--ceEEEee
Q 029920 85 DGLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTE---IAKVLNLEAMDKTR--HWKIVGC 158 (185)
Q Consensus 85 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~ 158 (185)
|++++|+|++++++++.+..|...+.... ..++.|+++|+||+|+.+.....+ .............. .++++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~t 161 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPT 161 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEEC
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEe
Confidence 99999999999999988865543332211 235799999999999875322210 11111111111111 3789999
Q ss_pred cccCCCCHHHHHHHHHHHHhhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
||++ .++.++|..+++.+.+.
T Consensus 162 Sa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 162 SIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp CTTS-SHHHHHHHHHHHTTCSC
T ss_pred eecC-ChHHHHHHHHHHHHcCC
Confidence 9999 89999999988765443
No 109
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=1e-26 Score=157.99 Aligned_cols=147 Identities=18% Similarity=0.265 Sum_probs=106.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
++|+++|++|+|||||++++.+..+....+ +.......+..++..+.+|||||+.. +...+..+++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 689999999999999999999887543222 33345556677888999999999876 4556677889999
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYTGE 164 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~ 164 (185)
++++|+|++++.+... .++..++.. .+.|+++|+||+|+.+.. ++..+ +.. .+. +++++||++|.
T Consensus 82 ~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~--~~~~~------~~~-~~~~~~~~~Sa~~~~ 147 (161)
T 2dyk_A 82 VVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE--LYLGP------LYG-LGFGDPIPTSSEHAR 147 (161)
T ss_dssp EEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG--GGCGG------GGG-GSSCSCEECBTTTTB
T ss_pred EEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch--HhHHH------HHh-CCCCCeEEEecccCC
Confidence 9999999998644332 333444333 378999999999986541 11111 111 233 68999999999
Q ss_pred CHHHHHHHHHHHH
Q 029920 165 GLLEGFDWLVQDI 177 (185)
Q Consensus 165 ~i~~l~~~l~~~~ 177 (185)
|++++++++.+.+
T Consensus 148 gv~~l~~~l~~~l 160 (161)
T 2dyk_A 148 GLEELLEAIWERL 160 (161)
T ss_dssp SHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHhC
Confidence 9999999998765
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=2.2e-26 Score=172.16 Aligned_cols=165 Identities=19% Similarity=0.217 Sum_probs=122.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEc-CeEEEEEEcCCchh----------hHHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQ-KYTLNIWDVGGQRT----------IRSY 76 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~-~~~~~~~D~~g~~~----------~~~~ 76 (185)
.+.+.-.|+++|.+|+|||||+|+|.+..+...++..+ ........+ +.++.+|||||+.. +...
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 35667789999999999999999999998865544333 344455667 89999999999843 3356
Q ss_pred HHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC-CCCCHHHHHHhcCcccccCccceEE
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN-GALTPTEIAKVLNLEAMDKTRHWKI 155 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
...+++.+|++++|+|++++.++.....|+..+.. .+.|+++|+||+|+. +.....+....+.... ....++
T Consensus 86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~---~~~~~i 158 (308)
T 3iev_A 86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKH---PELTEI 158 (308)
T ss_dssp HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHC---TTCCCE
T ss_pred HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhc---cCCCeE
Confidence 67788999999999999998887775554444433 379999999999987 4333333333322111 023579
Q ss_pred EeecccCCCCHHHHHHHHHHHHhhhccc
Q 029920 156 VGCSAYTGEGLLEGFDWLVQDIASRIYL 183 (185)
Q Consensus 156 ~~~Sa~~~~~i~~l~~~l~~~~~~~~~~ 183 (185)
+++||++|.|++++++++.+.+.+.-+.
T Consensus 159 ~~vSA~~g~gv~~L~~~l~~~l~~~~~~ 186 (308)
T 3iev_A 159 VPISALKGANLDELVKTILKYLPEGEPL 186 (308)
T ss_dssp EECBTTTTBSHHHHHHHHHHHSCBCCCS
T ss_pred EEEeCCCCCCHHHHHHHHHHhCccCCCC
Confidence 9999999999999999999998765443
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.94 E-value=3.8e-26 Score=170.13 Aligned_cols=160 Identities=19% Similarity=0.148 Sum_probs=115.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchh--------hHHHHHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRT--------IRSYWRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 81 (185)
.+..+|+++|++|+|||||+|+|++..+...++ |.......+..++.++.+|||||... +......++
T Consensus 5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l 84 (301)
T 1wf3_A 5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL 84 (301)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence 455689999999999999999999988864433 22233334556789999999999765 556667788
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+.+|++++|+|++++.+.. ..++...+... .++.|+++|+||+|+..... ..+....+ ....+++++||
T Consensus 85 ~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-------~~~~~~~~iSA 154 (301)
T 1wf3_A 85 ADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEEAMKAYHEL-------LPEAEPRMLSA 154 (301)
T ss_dssp SSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHHHHHHHHHT-------STTSEEEECCT
T ss_pred hcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHHHHHHHHHh-------cCcCcEEEEeC
Confidence 9999999999999865443 34443333332 24689999999999875422 22222222 13457899999
Q ss_pred cCCCCHHHHHHHHHHHHhhhccc
Q 029920 161 YTGEGLLEGFDWLVQDIASRIYL 183 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~~ 183 (185)
++|.|++++++.+.+.+.+..+.
T Consensus 155 ~~g~gv~~l~~~l~~~l~~~~~~ 177 (301)
T 1wf3_A 155 LDERQVAELKADLLALMPEGPFF 177 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCBCCCS
T ss_pred CCCCCHHHHHHHHHHhcccCCCC
Confidence 99999999999999877654433
No 112
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.94 E-value=1.4e-25 Score=169.18 Aligned_cols=165 Identities=20% Similarity=0.250 Sum_probs=119.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceE-EEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFN-IKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
....++|+++|++|+|||||++++.++.+. .+.+|.+.. ...+..++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 456799999999999999999999977664 445555533 23345555 45669999999999989999999999999
Q ss_pred EEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCc--------ccccCccc-eEEEee
Q 029920 89 WVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNL--------EAMDKTRH-WKIVGC 158 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~ 158 (185)
+|+|++++.++.... .|+..+... ..+.|+++|+||+|+.......+....... ..+....+ .+++++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHH--CTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhh--CCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 999999999999887 444444333 237999999999998543111111110000 00111123 389999
Q ss_pred cccCCCCHHHHHHHHHHHHhh
Q 029920 159 SAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
||++|.|+++++++|.+.+.+
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999987754
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=1.5e-26 Score=161.31 Aligned_cols=160 Identities=17% Similarity=0.221 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEEEcCeEEEEEEcCC-----------chhhHHHHHhhhcC-
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVTYQKYTLNIWDVGG-----------QRTIRSYWRNYFEQ- 83 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~~~~- 83 (185)
++|+++|++|+|||||+++|.+..+. ...++.......+... .+.+||||| ++.+...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEEEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEEecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999998764 2334333333334444 789999999 66777777777776
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHH---------HHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDN---------LLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRH 152 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~---------~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~ 152 (185)
++++++|+++.+..++......|.. +.......+.|+++|+||+|+.... ..+++...++.. ... ..
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~-~~ 157 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVP-LSE-ID 157 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCC-GGG-HH
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhh-hhc-cC
Confidence 7766666666666777766332221 2222233579999999999987653 112222222210 000 12
Q ss_pred eEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 153 WKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 153 ~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
.+++++||++|.|++++++++.+.+.+.
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 4589999999999999999999988654
No 114
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.94 E-value=6.2e-25 Score=154.55 Aligned_cols=160 Identities=18% Similarity=0.326 Sum_probs=121.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcc--eEEEEEEEcC--eEEEEEEcCCchhhHHHHHhhhcCCCEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLG--FNIKTVTYQK--YTLNIWDVGGQRTIRSYWRNYFEQTDGLV 88 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~--~~~~~~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 88 (185)
...++|+++|++|||||||++++.+..+. ...++.+ +....+.+++ +.+.+||++|++.+...+..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45789999999999999999999998774 3445544 3344566666 56789999999988888888889999999
Q ss_pred EEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC--CHHHHHHhcCcccccCccceEEEeecccCCCCH
Q 029920 89 WVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL--TPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGL 166 (185)
Q Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 166 (185)
+|+|+++..++.....|+..+... ...+.|+++++||+|+.+.. ...+..... ...++.++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~~d~Sal~~~~i 155 (199)
T 2f9l_A 83 LVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNNLSFIETSALDSTNV 155 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHH------HHcCCeEEEEeCCCCCCH
Confidence 999999988888877776655432 23468999999999986432 222222211 115568899999999999
Q ss_pred HHHHHHHHHHHhhh
Q 029920 167 LEGFDWLVQDIASR 180 (185)
Q Consensus 167 ~~l~~~l~~~~~~~ 180 (185)
++++++|.+.+.+.
T Consensus 156 ~~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 156 EEAFKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987653
No 115
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.94 E-value=2.7e-26 Score=164.01 Aligned_cols=163 Identities=15% Similarity=0.132 Sum_probs=109.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC-CcccccCcc----eEEEEEE-EcCeEEEEEEcCCc----------hhhHHH
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED-TSVISPTLG----FNIKTVT-YQKYTLNIWDVGGQ----------RTIRSY 76 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-~~~~~~t~~----~~~~~~~-~~~~~~~~~D~~g~----------~~~~~~ 76 (185)
..+.++|+|+|.+|+|||||+++|++.. .....++.+ .....+. .++..+.+|||||. +.+...
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 4567899999999999999999999987 333333332 2222232 34578999999994 444556
Q ss_pred HHhhhcC---CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccccc-----
Q 029920 77 WRNYFEQ---TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMD----- 148 (185)
Q Consensus 77 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~----- 148 (185)
...++.. +|++++|+|++++.+.. ...+...+.. .+.|+++|+||+|+............+......
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 180 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTEL--DRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHH--HHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHH--HHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcc
Confidence 6666655 78899999999754322 2222233332 378999999999987643322222211111111
Q ss_pred CccceEEEeecccCCCCHHHHHHHHHHHHhhh
Q 029920 149 KTRHWKIVGCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 149 ~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
.....+++++||++|.|+++++++|.+.+.+.
T Consensus 181 ~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 181 YAGKLTVQLFSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp CCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence 02567899999999999999999999988653
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.94 E-value=2e-26 Score=168.33 Aligned_cols=149 Identities=23% Similarity=0.264 Sum_probs=109.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-cc--ccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--c
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VI--SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--E 82 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 82 (185)
.+.++|+++|++|||||||+|+|++..+. .. +.|.......+...+..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 46789999999999999999999987763 11 2233344555667789999999999876543 334444 5
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCcccccCccceEEEee
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+|++++|+|+++.++.. .++..+.. .+.|+++|+||+|+..... ...+.. ..+++++++
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~~~~~l~~---------~lg~~vi~~ 146 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKIDRYELQK---------HLGIPVVFT 146 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCBCHHHHHH---------HHCSCEEEC
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHHHHHHHHH---------HcCCCEEEE
Confidence 899999999999865433 34444433 2799999999999743211 122222 245689999
Q ss_pred cccCCCCHHHHHHHHHHHHh
Q 029920 159 SAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (185)
||++|.|++++++++.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999998775
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=2.6e-26 Score=159.91 Aligned_cols=152 Identities=25% Similarity=0.291 Sum_probs=111.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE-- 82 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 82 (185)
.+.++|+++|++|+|||||+++|++..+. ...+ +.......+..++..+.+|||||++.+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 35689999999999999999999987542 2223 3334555677788999999999987763 34555554
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEee
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGC 158 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (185)
.+|++++|+|.++ ++....++..+.. .+.|+++|+||+|+.... ...++... .+++++++
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---------~~~~~~~~ 148 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIEIDVDKLEKI---------LGVKVVPL 148 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCCCCHHHHHHH---------HTSCEEEC
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccchHHHHHHHHH---------hCCCeEEE
Confidence 5999999999975 4555555555543 378999999999974321 11222211 34579999
Q ss_pred cccCCCCHHHHHHHHHHHHhhhc
Q 029920 159 SAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
||+++.|++++++++.+.+.+..
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EecCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999887654
No 118
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.93 E-value=6e-27 Score=170.84 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=106.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH----------HHHhhh--
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS----------YWRNYF-- 81 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~-- 81 (185)
.+|+++|.+|||||||+|+|.+.... ....|.......+.+++..+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 58999999999999999999998652 122344455666777889999999999876543 455666
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+.+|++++|+|+++.+++..+.. .+.. .+.|+++|+||+|+............ +....+++++++||+
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~---~l~~----~~~pvilv~NK~Dl~~~~~~~~~~~~-----l~~~lg~~vi~~SA~ 149 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTS---QLFE----LGKPVVVALNMMDIAEHRGISIDTEK-----LESLLGCSVIPIQAH 149 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHH---HHTT----SCSCEEEEEECHHHHHHTTCEECHHH-----HHHHHCSCEEECBGG
T ss_pred CCCCEEEEEeeCCCchhHHHHHH---HHHH----cCCCEEEEEEChhcCCcCCcHHHHHH-----HHHHcCCCEEEEECC
Confidence 88999999999998654443332 2222 27999999999997543211111111 111145689999999
Q ss_pred CCCCHHHHHHHHHHH
Q 029920 162 TGEGLLEGFDWLVQD 176 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~ 176 (185)
+|.|++++++++.+.
T Consensus 150 ~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 150 KNIGIPALQQSLLHC 164 (256)
T ss_dssp GTBSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999876
No 119
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.93 E-value=3.5e-26 Score=166.89 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=110.2
Q ss_pred ccCceeEEEEEcCC---------CCChHHHHHHHhCC---CC-cccccCc-c--eEEE----------------EEEEcC
Q 029920 12 KKEKEMRILMVGLD---------NSGKTTIVLKINGE---DT-SVISPTL-G--FNIK----------------TVTYQK 59 (185)
Q Consensus 12 ~~~~~~~i~v~G~~---------~~GKttli~~l~~~---~~-~~~~~t~-~--~~~~----------------~~~~~~ 59 (185)
.....+||+++|.+ |+|||||+++|.+. .+ ..+.++. + +... .+....
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE 94 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence 35567999999999 99999999999984 33 2222322 1 1000 012344
Q ss_pred eEEEEEE-----------------------cCCchhhHHHHHhhhc---------------------CCCEEEEEEeCCC
Q 029920 60 YTLNIWD-----------------------VGGQRTIRSYWRNYFE---------------------QTDGLVWVVDSSD 95 (185)
Q Consensus 60 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~ 95 (185)
+.+.+|| ++|++.+...+..++. ++|++++|||+++
T Consensus 95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~ 174 (255)
T 3c5h_A 95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR 174 (255)
T ss_dssp -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence 7899999 5555555555555555 7999999999999
Q ss_pred c--ccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 96 L--RRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 96 ~--~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+ .+++.+..|+..+.......+.|+++|+||+|+.+....++.... .....+++++++||++|.|++++|++|
T Consensus 175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~-----~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTF-----ALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHH-----HHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHH-----HHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 8 999999988888776534457999999999998543222111111 111135689999999999999999999
Q ss_pred HHHHh
Q 029920 174 VQDIA 178 (185)
Q Consensus 174 ~~~~~ 178 (185)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.93 E-value=7.1e-27 Score=172.16 Aligned_cols=154 Identities=19% Similarity=0.183 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhH----------HHHHhhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR----------SYWRNYF 81 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~~~~~ 81 (185)
+.++|+++|.+|||||||+|+|++.... ..+.|.......+...+..+.+|||||+..+. .....++
T Consensus 2 ~~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 2 KKLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4689999999999999999999998752 11223444555667778899999999976654 2233333
Q ss_pred --cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 82 --EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 82 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+.+|++++|+|+++.++......++.. . +.|+++|+||+|+.+.......... +....+++++++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~---~----~~p~ivv~NK~Dl~~~~~~~~~~~~-----l~~~lg~~~i~~S 149 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLE---L----GIPCIVALNMLDIAEKQNIRIEIDA-----LSARLGCPVIPLV 149 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHH---H----TCCEEEEEECHHHHHHTTEEECHHH-----HHHHHTSCEEECC
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHh---c----CCCEEEEEECccchhhhhHHHHHHH-----HHHhcCCCEEEEE
Confidence 789999999999985544443333332 2 7999999999997543221111111 1111456899999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|.|++++++++.+.+.+.
T Consensus 150 A~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 150 STRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp CGGGHHHHHHHHHHHTCCCCC
T ss_pred cCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999998876543
No 121
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.4e-25 Score=175.16 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCc----ceEEEEEEEcCeEEEEEEcCCc----------hhhHHHHH-h
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTL----GFNIKTVTYQKYTLNIWDVGGQ----------RTIRSYWR-N 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~----~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~-~ 79 (185)
..++|+++|++|+|||||+|+|.+......++.. ......+..++..+.+|||||+ +.+..... .
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~ 253 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALK 253 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHH
Confidence 5689999999999999999999998764333322 2333456778889999999997 44444433 4
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEe
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+++.+|++++|+|++++.+++.. .++..+. ..++|+++|+||+|+.+... .++....+.. .+......++++
T Consensus 254 ~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~----~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~ 327 (436)
T 2hjg_A 254 AIDRSEVVAVVLDGEEGIIEQDK-RIAGYAH----EAGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPILF 327 (436)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHH-HHHHHHH----HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHH-HCGGGTTSCEEE
T ss_pred HHHhCCEEEEEEcCCcCCcHHHH-HHHHHHH----HcCCcEEEEEECccCCCcchHHHHHHHHHHHH-hcccCCCCCEEE
Confidence 78899999999999998887764 3333332 24799999999999876533 2233322221 122225678999
Q ss_pred ecccCCCCHHHHHHHHHHHHhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
+||++|.|++++++.+.+.+.+
T Consensus 328 ~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 328 MSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp CCTTTCTTGGGHHHHHHHHHHH
T ss_pred EecccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 122
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3e-26 Score=168.34 Aligned_cols=147 Identities=22% Similarity=0.262 Sum_probs=103.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc--CcceEEEEEEEcCeEEEEEEcCCchhhH------HHHHhhhc--C
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISP--TLGFNIKTVTYQKYTLNIWDVGGQRTIR------SYWRNYFE--Q 83 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~--~ 83 (185)
..++|+++|++|||||||+|+|++.... ...+ |.......+.. +..+.+|||||+..+. .....++. .
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~ 80 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQR 80 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTC
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCC
Confidence 3589999999999999999999987532 1112 22222333333 6789999999987764 44555664 6
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC----CHHHHHHhcCcccccCccceEEEeec
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL----TPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+|++++|+|+++.++. ..++..+.. .+.|+++++||+|+.... ....+.. ..+++++++|
T Consensus 81 ~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~---------~lg~~vi~~S 144 (272)
T 3b1v_A 81 ADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKKINVDKLSY---------HLGVPVVATS 144 (272)
T ss_dssp CSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCCCCHHHHHH---------HHTSCEEECB
T ss_pred CCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcHHHHHHHHH---------HcCCCEEEEE
Confidence 9999999999885443 333344333 379999999999974321 1122222 1356899999
Q ss_pred ccCCCCHHHHHHHHHHHHh
Q 029920 160 AYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~ 178 (185)
|++|.|++++++++.+.+.
T Consensus 145 A~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCT
T ss_pred ccCCCCHHHHHHHHHHHHh
Confidence 9999999999999988764
No 123
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=4.1e-24 Score=149.52 Aligned_cols=158 Identities=16% Similarity=0.309 Sum_probs=120.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcce--EEEEEEEcCe--EEEEEEcCCchhhHHHHHhhhcCCCEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGF--NIKTVTYQKY--TLNIWDVGGQRTIRSYWRNYFEQTDGL 87 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~--~~~~~~~~~~--~~~~~D~~g~~~~~~~~~~~~~~~d~~ 87 (185)
....++|+++|++|||||||++++.+..++ ...+|.+. ....+.+++. .+.+||++|.+.+...+..+++.++++
T Consensus 26 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 105 (191)
T 1oix_A 26 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGA 105 (191)
T ss_dssp CSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEE
Confidence 455799999999999999999999998775 45566654 3445666664 566799999988888888888999999
Q ss_pred EEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC--CCHHHHHHhcCcccccCccceEEEeecccCCCC
Q 029920 88 VWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEG 165 (185)
Q Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 165 (185)
++|+|+++..+++.+..|+..+... ...+.|+++++||+|+.+. .......... ...++.++++||+++.|
T Consensus 106 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~------~~~~~~~ld~Sald~~~ 178 (191)
T 1oix_A 106 LLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFA------EKNGLSFIETSALDSTN 178 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHH------HHTTCEEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHH------HHcCCEEEEEeCCCCCC
Confidence 9999999988888777766654332 2346899999999998642 2222222211 11456889999999999
Q ss_pred HHHHHHHHHHHH
Q 029920 166 LLEGFDWLVQDI 177 (185)
Q Consensus 166 i~~l~~~l~~~~ 177 (185)
++++++.|.+.+
T Consensus 179 v~~l~~~l~~~i 190 (191)
T 1oix_A 179 VEAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 124
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.92 E-value=4.8e-25 Score=172.97 Aligned_cols=156 Identities=19% Similarity=0.250 Sum_probs=99.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHH--------Hhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW--------RNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 80 (185)
.+..++|+++|.+|+|||||+|+|.+......++ |.......+.+++..+.+|||||+..+...+ ..+
T Consensus 230 ~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 230 VSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CC
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3456899999999999999999999986543333 3334445677889999999999987755433 336
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|++++.++..... ...++.... +.|+++|+||+|+........ +.+... ...+++++||
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~-~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~--~~l~~~-----~~~~~i~vSA 379 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTE-IRELKAAHP--AAKFLTVANKLDRAANADALI--RAIADG-----TGTEVIGISA 379 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHH-HHHHHHHCT--TSEEEEEEECTTSCTTTHHHH--HHHHHH-----HTSCEEECBT
T ss_pred cccCCEEEEEEECCCCcchhhhHH-HHHHHHhcC--CCCEEEEEECcCCCCccchhH--HHHHhc-----CCCceEEEEE
Confidence 789999999999999877753222 223333322 799999999999976543321 111110 1246899999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 029920 161 YTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (185)
++|.|+++++++|.+.+.
T Consensus 380 ktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 380 LNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp TTTBSHHHHHHHHTHHHH
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999999886
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.92 E-value=2.8e-25 Score=163.50 Aligned_cols=151 Identities=21% Similarity=0.204 Sum_probs=110.4
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH------HHHhhh--cC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS------YWRNYF--EQ 83 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~~ 83 (185)
+.++|+++|++|||||||+++|++..+. ....+.......+.+++..+.+|||||+..+.. ....++ ..
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 4689999999999999999999998762 112234455556777889999999999876554 455555 68
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC----CCHHHHHHhcCcccccCccceEEEeec
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA----LTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
+|++++|+|+++. .....++..+... ...|+++++||+|+.+. .....+... .+++++++|
T Consensus 82 ~d~vi~v~D~~~~---~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~---------lg~~~~~~S 146 (271)
T 3k53_A 82 ADVIVDIVDSTCL---MRNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKIDIKKMRKE---------LGVPVIPTN 146 (271)
T ss_dssp CSEEEEEEEGGGH---HHHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCCHHHHHHH---------HSSCEEECB
T ss_pred CcEEEEEecCCcc---hhhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHHHHHHHHH---------cCCcEEEEE
Confidence 9999999999874 3333444444333 13999999999996421 122222222 346799999
Q ss_pred ccCCCCHHHHHHHHHHHHhhh
Q 029920 160 AYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~~ 180 (185)
|++|.|++++++.+.+.+.+.
T Consensus 147 a~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 147 AKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp GGGTBTHHHHHHHHHHHHHTC
T ss_pred eCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 126
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.92 E-value=1.7e-24 Score=169.08 Aligned_cols=150 Identities=20% Similarity=0.279 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchh---------hHHHHHhhhcC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRT---------IRSYWRNYFEQ 83 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~~ 83 (185)
.+|+++|.||+|||||+|+|++.......++.+ .....+.+++..+.+|||||.+. +..+...+++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 589999999999999999999987654444433 44556778899999999999653 45567788999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHH-HHhcCcccccCccce-EEEeeccc
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEI-AKVLNLEAMDKTRHW-KIVGCSAY 161 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~Sa~ 161 (185)
+|++++|+|++++.+... .++..++.. .++|+++|+||+|+.+.. ..+. .+.. . .+. +++++||+
T Consensus 82 ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~~-~~~~~~~~~------~-lg~~~~~~iSA~ 148 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLREF-EREVKPELY------S-LGFGEPIPVSAE 148 (439)
T ss_dssp CSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHHH-HHHTHHHHG------G-GSSCSCEECBTT
T ss_pred CCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCcccc-HHHHHHHHH------h-cCCCCEEEEecc
Confidence 999999999987654432 233333332 268999999999974320 1111 1111 1 222 47999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 029920 162 TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (185)
+|.|++++++++.+.+.+
T Consensus 149 ~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 149 HNINLDTMLETIIKKLEE 166 (439)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999988764
No 127
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=8.1e-25 Score=165.20 Aligned_cols=159 Identities=22% Similarity=0.216 Sum_probs=115.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
.+|+++|.+|+|||||+++|++.... ....|.......+.+++ ..+.+|||||..+ +......+++.+|
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d 238 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTR 238 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhcc
Confidence 46899999999999999999887642 12244455555677765 8999999999643 2222333455699
Q ss_pred EEEEEEeCCC---cccHHHHHHHHHHHHhccc-cCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecc
Q 029920 86 GLVWVVDSSD---LRRLDDCKMELDNLLKEER-LSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 86 ~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++++|+|+++ +.+++....++..+..+.. ..++|+++|+||+|+....+ .+++...+. ...+++++||
T Consensus 239 ~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~-------~~~~v~~iSA 311 (342)
T 1lnz_A 239 VIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLT-------DDYPVFPISA 311 (342)
T ss_dssp EEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCC-------SCCCBCCCSS
T ss_pred EEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhh-------cCCCEEEEEC
Confidence 9999999998 7788887777776655421 34799999999999865321 112222221 1157899999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcc
Q 029920 161 YTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
+++.|+++++++|.+.+.+...
T Consensus 312 ~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 312 VTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CCSSTTHHHHHHHHHHHTSCCC
T ss_pred CCCcCHHHHHHHHHHHHhhCcc
Confidence 9999999999999999876543
No 128
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.92 E-value=1.5e-24 Score=173.18 Aligned_cols=157 Identities=19% Similarity=0.288 Sum_probs=108.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCcceEEEEEE--------E----cCeEEEEEEcCCchhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTLGFNIKTVT--------Y----QKYTLNIWDVGGQRTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~~~~~~~~~--------~----~~~~~~~~D~~g~~~~~~~~~~ 79 (185)
....+||+++|.+|||||||++++.+..+. ...+|.+....... . ....+.+|||||++.+......
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~ 117 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF 117 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence 456799999999999999999999998774 45566665554321 1 2589999999999999988888
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEEe
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIVG 157 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+++.+|++++|+|+++.+.. ..|+..+.... ++.|+++|+||+|+.+... .++....... .+.++++
T Consensus 118 ~l~~~d~ii~V~D~s~~~~~---~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~------~~~~~~~ 186 (535)
T 3dpu_A 118 FMTRSSVYMLLLDSRTDSNK---HYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA------IENRFHR 186 (535)
T ss_dssp HHHSSEEEEEEECGGGGGGH---HHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG------GTTCEEE
T ss_pred HccCCcEEEEEEeCCCchhH---HHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh------cCCceEE
Confidence 99999999999999876444 34444443332 3689999999999865432 3333333321 4457999
Q ss_pred ecccCCCCHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+||++|.|++++++++.+.+.+.
T Consensus 187 vSA~~g~gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 187 ISCKNGDGVESIAKSLKSAVLHP 209 (535)
T ss_dssp CCC-----CTTHHHHHHHHHTCT
T ss_pred EecCcccCHHHHHHHHHHHHhcc
Confidence 99999999999999999988664
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.92 E-value=6.2e-26 Score=161.71 Aligned_cols=123 Identities=24% Similarity=0.366 Sum_probs=95.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC----CCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ----TDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~~i 88 (185)
..+.++|+++|++|+|||||+++|.+..+.....+...+.. ..+....+.+|||||++.+...+..++.. +|+++
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 87 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 87 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE-TTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE-EEeeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEE
Confidence 56789999999999999999999998876432211111111 11255789999999999998888888877 89999
Q ss_pred EEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCCCHH
Q 029920 89 WVVDSS-DLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGALTPT 136 (185)
Q Consensus 89 ~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~ 136 (185)
+|+|++ +++++.....++..++.... ..+.|+++|+||+|+.......
T Consensus 88 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~ 139 (218)
T 1nrj_B 88 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPS 139 (218)
T ss_dssp EEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH
T ss_pred EEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH
Confidence 999999 88899999998888876532 2579999999999998766543
No 130
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=1.5e-24 Score=170.32 Aligned_cols=151 Identities=23% Similarity=0.329 Sum_probs=113.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCccc----ccCcceEEEEEEEcCeEEEEEEcCCch-hhH--------HHHHhhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVI----SPTLGFNIKTVTYQKYTLNIWDVGGQR-TIR--------SYWRNYF 81 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 81 (185)
..++|+++|.+|+|||||+|+|.+...... ..|.......+.+++..+.+|||||.. ... .....++
T Consensus 242 ~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~ 321 (482)
T 1xzp_A 242 RGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI 321 (482)
T ss_dssp HCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred CCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence 348999999999999999999998764322 234445566778889999999999987 432 2345678
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
+.+|++++|+|++++.+++.. ..+ ..+ .++|+++|+||+|+.+....+++..... ...+++++||+
T Consensus 322 ~~aD~vl~VvD~s~~~s~~~~-~il-~~l-----~~~piivV~NK~DL~~~~~~~~~~~~~~-------~~~~~i~iSAk 387 (482)
T 1xzp_A 322 EKADIVLFVLDASSPLDEEDR-KIL-ERI-----KNKRYLVVINKVDVVEKINEEEIKNKLG-------TDRHMVKISAL 387 (482)
T ss_dssp HHCSEEEEEEETTSCCCHHHH-HHH-HHH-----TTSSEEEEEEECSSCCCCCHHHHHHHHT-------CSTTEEEEEGG
T ss_pred hcccEEEEEecCCCCCCHHHH-HHH-HHh-----cCCCEEEEEECcccccccCHHHHHHHhc-------CCCcEEEEECC
Confidence 899999999999998777552 222 222 3689999999999976544444433221 23468999999
Q ss_pred CCCCHHHHHHHHHHHHhh
Q 029920 162 TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~ 179 (185)
+|.|+++++++|.+.+..
T Consensus 388 tg~Gi~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 388 KGEGLEKLEESIYRETQE 405 (482)
T ss_dssp GTCCHHHHHHHHHHHTHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999997653
No 131
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.91 E-value=1.4e-23 Score=159.96 Aligned_cols=158 Identities=15% Similarity=0.197 Sum_probs=116.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcc---cccCcceEEEEEEEcCeEEEEEEcCCchhhH---------HHHHhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV---ISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR---------SYWRNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~ 81 (185)
...++|+++|++|+|||||+++|.+..... ...|.......+..++..+.+|||||..... .......
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 467899999999999999999999987531 2335555566666778899999999974321 1222344
Q ss_pred cCCCEEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeec
Q 029920 82 EQTDGLVWVVDSSDLR--RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCS 159 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 159 (185)
..+|++++|+|++++. ++.....++..+..... +.|+++|+||+|+.......+...... ..+.+++++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~~~~~~~~~~~~~~------~~~~~~~~iS 316 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVADEENIKRLEKFVK------EKGLNPIKIS 316 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTCCHHHHHHHHHHHH------HTTCCCEECB
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccCChHHHHHHHHHHH------hcCCCeEEEe
Confidence 5689999999998876 67777777776655432 799999999999865432222222111 1456799999
Q ss_pred ccCCCCHHHHHHHHHHHHhh
Q 029920 160 AYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 160 a~~~~~i~~l~~~l~~~~~~ 179 (185)
|++|.|++++++++.+.+..
T Consensus 317 A~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 317 ALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp TTTTBTHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHH
Confidence 99999999999999998754
No 132
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.91 E-value=2.8e-24 Score=166.26 Aligned_cols=164 Identities=20% Similarity=0.102 Sum_probs=115.0
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE-----------------------EEEcCeEEEEEEcC
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT-----------------------VTYQKYTLNIWDVG 68 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~-----------------------~~~~~~~~~~~D~~ 68 (185)
...+.++|+++|++|+|||||+++|.+............+... .......+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 3567899999999999999999999985443211000000000 01112689999999
Q ss_pred CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc-c
Q 029920 69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA-M 147 (185)
Q Consensus 69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~ 147 (185)
|++.+...+..++..+|++++|+|+++..++.....++...... ...|+++++||+|+.+.....+..+.+.... .
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~ 160 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG 160 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999876666666666544332 1358999999999976532222222211100 1
Q ss_pred cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 148 DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.....++++++||++|.|+++++++|.+.+.
T Consensus 161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence 1124678999999999999999999998764
No 133
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.91 E-value=3.6e-24 Score=168.00 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=113.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCC----------chhhHHHHH-
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGG----------QRTIRSYWR- 78 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~- 78 (185)
...++|+++|.+|+|||||+++|.+......++..+ .....+..++..+.+||||| ++.+.....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~ 272 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL 272 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHH
Confidence 457899999999999999999999876543333222 33345677888999999999 666665544
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEE
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
.+++.+|++++|+|+++..+.. ..++...+.. .++|+++|+||+|+.+... .++..+.... .+......+++
T Consensus 273 ~~~~~ad~~llviD~~~~~~~~--~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 346 (456)
T 4dcu_A 273 KAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRD-HFQFLDYAPIL 346 (456)
T ss_dssp HHHHHCSEEEEEEETTTCCCHH--HHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHH-HCGGGTTSCEE
T ss_pred HHHhhCCEEEEEEeCCCCcCHH--HHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHH-hcccCCCCCEE
Confidence 4788999999999999854322 2223333332 3799999999999875432 2333322221 12222457899
Q ss_pred eecccCCCCHHHHHHHHHHHHhhh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
++||++|.|++++++++.+.+.+.
T Consensus 347 ~~SA~~g~gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 347 FMSALTKKRIHTLMPAIIKASENH 370 (456)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred EEcCCCCcCHHHHHHHHHHHHHHh
Confidence 999999999999999999887543
No 134
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=9e-24 Score=160.05 Aligned_cols=135 Identities=22% Similarity=0.364 Sum_probs=107.7
Q ss_pred cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhcccc
Q 029920 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~ 115 (185)
+|.++....+.++++.+++|||+|++.++..|..|+++++++|+|+|+++ ..++.+...++..+......
T Consensus 179 ~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~ 258 (353)
T 1cip_A 179 KTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWF 258 (353)
T ss_dssp CCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGG
T ss_pred ceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccc
Confidence 46667777788889999999999999999999999999999999999998 56799999999999887666
Q ss_pred CCCeEEEEeecCCCCC-----------------CCCHHHHHHhcCcc--ccc---CccceEEEeecccCCCCHHHHHHHH
Q 029920 116 SGASLLILANKQDING-----------------ALTPTEIAKVLNLE--AMD---KTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~-----------------~~~~~~~~~~~~~~--~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
.+.|+++++||+|+.. ....++........ .+. ....+++++|||+++.|++++|+++
T Consensus 259 ~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v 338 (353)
T 1cip_A 259 TDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAV 338 (353)
T ss_dssp TTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHH
T ss_pred cCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHH
Confidence 7899999999999842 12233333222110 010 1257889999999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.+.
T Consensus 339 ~~~i~~~ 345 (353)
T 1cip_A 339 TDVIIKN 345 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988654
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=7.5e-25 Score=169.38 Aligned_cols=154 Identities=18% Similarity=0.193 Sum_probs=108.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEEEEcCe-EEEEEEcCCchhhHHH-------HHhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTVTYQKY-TLNIWDVGGQRTIRSY-------WRNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~-------~~~~ 80 (185)
....++|+++|+.|+|||||+++|.+..+.... .|.......+.+.+. .+.+|||||+..+... ...+
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 456789999999999999999999998764322 244445556666654 9999999998765432 4567
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+..+|++++|+|+.... ....++..+... +.|+++|+||+|+...... +....+.. ..+.+++++||
T Consensus 111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~-~~~~~l~~-----~~g~~v~~vSA 177 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTP---YEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE-ELKGLYES-----RYEAKVLLVSA 177 (423)
T ss_dssp HTSCSEEEEECSSSCCH---HHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT-HHHHHSSC-----CTTCCCCCCSS
T ss_pred HhcCCEEEEEEeCCChH---HHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH-HHHHHHHH-----HcCCCEEEEEC
Confidence 88999999999993322 223343433332 7999999999999776554 23333322 24568999999
Q ss_pred cCCCCHHHHHHHHHHHHhh
Q 029920 161 YTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~ 179 (185)
++|.|+++++++|.+.+.+
T Consensus 178 ktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 178 LQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CCTTSTTTHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHhhhh
Confidence 9999999999999998854
No 136
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.91 E-value=1.5e-23 Score=156.78 Aligned_cols=136 Identities=20% Similarity=0.254 Sum_probs=108.3
Q ss_pred ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhccc
Q 029920 45 SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEER 114 (185)
Q Consensus 45 ~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~ 114 (185)
.+|.|+....+..+++.+++|||+|++.++..|..|+++++++|+|+|++ +..++.+...++..+.....
T Consensus 152 ~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~ 231 (327)
T 3ohm_A 152 VPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW 231 (327)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGG
T ss_pred CceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhc
Confidence 35777778888889999999999999999999999999999999999654 67789999999999988766
Q ss_pred cCCCeEEEEeecCCCCCC------------------CCHHHHHHhc----CcccccCccceEEEeecccCCCCHHHHHHH
Q 029920 115 LSGASLLILANKQDINGA------------------LTPTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 115 ~~~~~~ivv~nK~D~~~~------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 172 (185)
..+.|+++++||+|+... ...++....+ .....+....+.+++|||+++.||+++|+.
T Consensus 232 ~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~ 311 (327)
T 3ohm_A 232 FQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAA 311 (327)
T ss_dssp GTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred cCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHH
Confidence 678999999999997431 2233322221 111112235678899999999999999999
Q ss_pred HHHHHhhh
Q 029920 173 LVQDIASR 180 (185)
Q Consensus 173 l~~~~~~~ 180 (185)
+.+.+.++
T Consensus 312 v~~~Il~~ 319 (327)
T 3ohm_A 312 VKDTILQL 319 (327)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99988764
No 137
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.91 E-value=3.3e-24 Score=167.38 Aligned_cols=150 Identities=23% Similarity=0.335 Sum_probs=101.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCCch--------hhHHHHHhhhcC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGGQR--------TIRSYWRNYFEQ 83 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~~ 83 (185)
.++|+++|.+|+|||||+|+|++.......++.+.+.. .+.+++..+.+|||||++ .+...+..+++.
T Consensus 3 ~~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 3 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CCEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 37899999999999999999999887766666665433 344467889999999985 566777888999
Q ss_pred CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccce-EEEeecccC
Q 029920 84 TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHW-KIVGCSAYT 162 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 162 (185)
+|++++|+|+.++.+... .++...+.. .++|+++|+||+|+..... +. .... . .+. +++++||++
T Consensus 83 ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~--~~-----~~~~-~-lg~~~~~~iSA~~ 148 (436)
T 2hjg_A 83 ADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA--NI-----YDFY-S-LGFGEPYPISGTH 148 (436)
T ss_dssp CSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC-------CC-----CSSG-G-GSSCCCEECBTTT
T ss_pred CCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh--hH-----HHHH-H-cCCCCeEEEeCcC
Confidence 999999999998766543 344454443 3789999999999864311 10 1111 1 222 589999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 029920 163 GEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 163 ~~~i~~l~~~l~~~~~~ 179 (185)
|.|++++++++.+.+.+
T Consensus 149 g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 149 GLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp TBTHHHHHHHHHHTGGG
T ss_pred CCChHHHHHHHHHhcCc
Confidence 99999999999988753
No 138
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=2.1e-23 Score=162.94 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=109.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcc----eEEEEEEEcCeEEEEEEcCCchhhHHH------------HH
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLG----FNIKTVTYQKYTLNIWDVGGQRTIRSY------------WR 78 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~----~~~~~~~~~~~~~~~~D~~g~~~~~~~------------~~ 78 (185)
..++|+++|++|||||||+|+|.+......++..+ .....+.+++..+.+|||||....... ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~ 258 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVV 258 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHH
Confidence 45899999999999999999999987644443333 333456778889999999997543321 13
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC--HHHHHHhcCcccccCccceEEE
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT--PTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
.+++.+|++++|+|+++..+.+.. .+...+.. .++|+++++||+|+.+... .++....+.. .+......+++
T Consensus 259 ~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 332 (439)
T 1mky_A 259 DSIEKADVVVIVLDATQGITRQDQ--RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFRE-KLYFIDYSPLI 332 (439)
T ss_dssp HHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHH-HCGGGTTSCEE
T ss_pred HHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHH-HhccCCCCcEE
Confidence 456789999999999986665542 22333322 3799999999999865432 2223222211 11222456899
Q ss_pred eecccCCCCHHHHHHHHHHHHhh
Q 029920 157 GCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
++||++|.|++++++.+.+.+.+
T Consensus 333 ~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 333 FTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987755
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.90 E-value=1.3e-23 Score=156.58 Aligned_cols=158 Identities=19% Similarity=0.144 Sum_probs=107.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCcccccC----cceEEEEEEEcCeEEEEEEcCCch-hhH--------HHHHhhh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISPT----LGFNIKTVTYQKYTLNIWDVGGQR-TIR--------SYWRNYF 81 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t----~~~~~~~~~~~~~~~~~~D~~g~~-~~~--------~~~~~~~ 81 (185)
+..+|+++|++|+|||||+|+|.+..+...++. .......+..++.++.++||||+. ... .....++
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l 86 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHHH
Confidence 456899999999999999999999876543322 223334456678899999999987 322 2234456
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccc-eEEEeecc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRH-WKIVGCSA 160 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Sa 160 (185)
+.+|++++|+|+++ +.....++...+. ..+.|+++++||+|+... .......+.. +....+ ..++++||
T Consensus 87 ~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~--~~~~~~~l~~--l~~~~~~~~~i~iSA 156 (301)
T 1ega_A 87 GDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQE--KADLLPHLQF--LASQMNFLDIVPISA 156 (301)
T ss_dssp CCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCC--HHHHHHHHHH--HHTTSCCSEEEECCT
T ss_pred hcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCcc--HHHHHHHHHH--HHHhcCcCceEEEEC
Confidence 78999999999976 2222233333333 236899999999998752 1222211110 111122 36899999
Q ss_pred cCCCCHHHHHHHHHHHHhhhcc
Q 029920 161 YTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
+++.|++++++.+.+.+.+.-+
T Consensus 157 ~~g~~v~~l~~~i~~~l~~~~~ 178 (301)
T 1ega_A 157 ETGLNVDTIAAIVRKHLPEATH 178 (301)
T ss_dssp TTTTTHHHHHHHHHTTCCBCCC
T ss_pred CCCCCHHHHHHHHHHhCCcCCC
Confidence 9999999999999987665433
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.90 E-value=1.2e-23 Score=165.62 Aligned_cols=163 Identities=15% Similarity=0.178 Sum_probs=112.3
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCCC----Cc------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhh
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGED----TS------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNY 80 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~~----~~------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 80 (185)
....+.++|+++|++++|||||+++|.+.. .. ....|.......+.+++..+.+|||||++.+...+..+
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 334567999999999999999999999876 21 11124444444566788999999999999999888999
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCccc-cc-CccceEEEee
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEA-MD-KTRHWKIVGC 158 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 158 (185)
+..+|++++|+|+++... ....+.+. ++.. .++|.++++||+|+.+....++..+.+.... .. .....+++++
T Consensus 94 ~~~aD~~ilVvda~~g~~-~qt~e~l~-~~~~---~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~v 168 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPK-TQTGEHML-ILDH---FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPI 168 (482)
T ss_dssp TTSCCEEEEEEETTTCSC-HHHHHHHH-HHHH---TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEEC
T ss_pred HhhCCEEEEEEecCCCcc-HHHHHHHH-HHHH---cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEE
Confidence 999999999999987321 11222222 2222 2688899999999976322222222221100 00 1136789999
Q ss_pred cccCCCCHHHHHHHHHHHHh
Q 029920 159 SAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 159 Sa~~~~~i~~l~~~l~~~~~ 178 (185)
||++|.|+++++++|.+.+.
T Consensus 169 SA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 169 SAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred ECcCCCCHHHHHHHHHHhhc
Confidence 99999999999999998764
No 141
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=2.8e-22 Score=155.23 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=103.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc----cccc--CcceEEEEEEE---------------c--------CeEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISP--TLGFNIKTVTY---------------Q--------KYTLN 63 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~--t~~~~~~~~~~---------------~--------~~~~~ 63 (185)
+...++|+++|+.++|||||+++|.+.... ...+ |.......... . ...+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 456799999999999999999999865432 1112 44433322221 1 16899
Q ss_pred EEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHH
Q 029920 64 IWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIA 139 (185)
Q Consensus 64 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~ 139 (185)
+|||||++.+...+...+..+|++++|+|+++........+.+..+ ... ...|+++++||+|+.+... .+++.
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l--~~~~iivv~NK~Dl~~~~~~~~~~~~i~ 161 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EIL--GIDKIIIVQNKIDLVDEKQAEENYEQIK 161 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHT--TCCCEEEEEECTTSSCTTTTTTHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHc--CCCeEEEEEEccCCCCHHHHHHHHHHHH
Confidence 9999999999888888888999999999999643222223333322 211 1358999999999976532 22333
Q ss_pred HhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 140 KVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
..+... .....+++++||++|.|+++++++|.+.+.
T Consensus 162 ~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 162 EFVKGT---IAENAPIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp HHHTTS---TTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred HHHhhc---CCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 333211 114678999999999999999999998764
No 142
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=1.7e-22 Score=153.49 Aligned_cols=134 Identities=21% Similarity=0.309 Sum_probs=98.6
Q ss_pred CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhccccC
Q 029920 47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERLS 116 (185)
Q Consensus 47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 116 (185)
|.++....+.++++.+.+|||+|++.++..|..++++++++|+|+|+++ ..++.+...++..+.......
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 4556666777889999999999999999999999999999999999999 779999999999998876667
Q ss_pred CCeEEEEeecCCCCC------------------CCCHHHHHHhc-----CcccccCccceEEEeecccCCCCHHHHHHHH
Q 029920 117 GASLLILANKQDING------------------ALTPTEIAKVL-----NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWL 173 (185)
Q Consensus 117 ~~~~ivv~nK~D~~~------------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 173 (185)
+.|+|+++||+|+.. ....++..... ..........+.+++|||+++.|++++|+++
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v 347 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDV 347 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHH
Confidence 899999999999742 12333333322 1101000246789999999999999999999
Q ss_pred HHHHhhh
Q 029920 174 VQDIASR 180 (185)
Q Consensus 174 ~~~~~~~ 180 (185)
.+.+.+.
T Consensus 348 ~~~i~~~ 354 (362)
T 1zcb_A 348 KDTILHD 354 (362)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987653
No 143
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=1.9e-22 Score=147.42 Aligned_cols=162 Identities=13% Similarity=0.135 Sum_probs=105.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--cc---cCcceEEEEEEEcCeEEEEEEcCCchhh-----------HHH
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--IS---PTLGFNIKTVTYQKYTLNIWDVGGQRTI-----------RSY 76 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~~---~t~~~~~~~~~~~~~~~~~~D~~g~~~~-----------~~~ 76 (185)
....++|+|+|++|+|||||+++|.+..... .. .|.......+.+++..+.+|||||+..+ ...
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999999877432 22 2444556667788899999999997543 222
Q ss_pred HHhhhcCCCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEee-cCCCCCCCCHHH------------HHHhc
Q 029920 77 WRNYFEQTDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILAN-KQDINGALTPTE------------IAKVL 142 (185)
Q Consensus 77 ~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~n-K~D~~~~~~~~~------------~~~~~ 142 (185)
...+++.+|++++|+|+++.... .....++...... ....|.++++| |+|+... .... ....+
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 33467889999999999863222 2222333333221 11345666665 9998754 2222 11111
Q ss_pred CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
... ...+..+++||+++.|++++|++|.+.+.+.-
T Consensus 176 ~~~----~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGR----ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTC----EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCe----EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 110 00011288999999999999999999987643
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.89 E-value=3.5e-22 Score=152.13 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=108.1
Q ss_pred eeE-EEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCc---------hhhHHHHHhhhc
Q 029920 16 EMR-ILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQ---------RTIRSYWRNYFE 82 (185)
Q Consensus 16 ~~~-i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~---------~~~~~~~~~~~~ 82 (185)
.++ |+++|++|+|||||+|+|.+.... ....|.+.....+.+++..+.+|||+|. +.+..... .+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~ 256 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAK 256 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHH-GGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHH-HHH
Confidence 344 999999999999999999988762 2345666667778888899999999996 22333333 568
Q ss_pred CCCEEEEEEeCCCcc--cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh---cCcccccCccceEEEe
Q 029920 83 QTDGLVWVVDSSDLR--RLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV---LNLEAMDKTRHWKIVG 157 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 157 (185)
.+|++++|+|++++. ..... ..+..++......+.|+++|+||+|+.+.. ....... +... .. ....++++
T Consensus 257 ~aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~-l~-~~~~~~~~ 332 (364)
T 2qtf_A 257 YSDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKE-LY-SPIFDVIP 332 (364)
T ss_dssp GSSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHH-HC-SCEEEEEE
T ss_pred hCCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHH-hc-CCCCcEEE
Confidence 899999999999875 33332 333444444344578999999999987643 2211111 0000 00 13457899
Q ss_pred ecccCCCCHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
+||+++.|+++++++|.+.+...
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHhccc
Confidence 99999999999999999877653
No 145
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=1.6e-23 Score=164.36 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=101.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEE----EEEEcCeEEEEEEcCC--------chhhHHHHHhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIK----TVTYQKYTLNIWDVGG--------QRTIRSYWRNY 80 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 80 (185)
....++|+++|.+|||||||+|+|.+.......++.+.+.. .+.+.+..+.+||||| ++.+......+
T Consensus 20 ~m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 20 HMGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp ---CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 44568999999999999999999999877656555555433 3344568999999999 77778888889
Q ss_pred hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecc
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
++.+|++++|+|+.+.-+ ....++...+.. .++|+++|+||+|+.+.. ....+.+. . ....++++||
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~--~~~~e~~~-----l-g~~~~~~iSA 166 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILYR---TKKPVVLAVNKLDNTEMR--ANIYDFYS-----L-GFGEPYPISG 166 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT---CCSCEEEEEECC-----------CCSGG-----G-SSSSEEECCT
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH---cCCCEEEEEECccchhhh--hhHHHHHH-----c-CCCceEEeec
Confidence 999999999999876433 333445555544 479999999999985431 11111111 1 1113579999
Q ss_pred cCCCCHHHHHHHHHHHHh
Q 029920 161 YTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 161 ~~~~~i~~l~~~l~~~~~ 178 (185)
++|.|++++++.+.+.+.
T Consensus 167 ~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 167 THGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp TTCTTHHHHHHHHHTTGG
T ss_pred ccccchHHHHHHHHhhcc
Confidence 999999999999988764
No 146
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=1.4e-22 Score=160.88 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=89.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC------------------CCCcc-------cccCcceEEEEEEEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING------------------EDTSV-------ISPTLGFNIKTVTYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~------------------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~D~ 67 (185)
..+..+|+++|++|+|||||+++|+. ..... ...|.......+.+.+..+++|||
T Consensus 10 ~~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDT 89 (528)
T 3tr5_A 10 TAMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDT 89 (528)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECC
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEEC
Confidence 45678999999999999999999961 11111 123445556677888999999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
||+..+......+++.+|++++|+|+++..+..... .+..... .++|+++++||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~-~~~~~~~----~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 90 PGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIK-LMEVCRL----RHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHH-HHHHHHT----TTCCEEEEEECTTSCCSC
T ss_pred CCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEeCCCCcccc
Confidence 999999999999999999999999999876655433 3333322 379999999999996543
No 147
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.89 E-value=2.7e-22 Score=156.52 Aligned_cols=155 Identities=20% Similarity=0.197 Sum_probs=105.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 58 (185)
.+..++|+++|++|+|||||+++|.+.... ....|.......+..+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~ 93 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE 93 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence 456799999999999999999999543210 0112444455556778
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCccc---HH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRR---LD---DCKMELDNLLKEERLSGAS-LLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 131 (185)
+..+.+|||||++.+...+..++..+|++++|+|+++... |. .....+..... .+.| +++++||+|+..
T Consensus 94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPT 169 (439)
T ss_pred CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcc
Confidence 8899999999999999999999999999999999998532 11 22222222211 2566 999999999864
Q ss_pred CCC----HHHHHH----hcCcccccCccceEEEeecccCCCCHHHHHH
Q 029920 132 ALT----PTEIAK----VLNLEAMDKTRHWKIVGCSAYTGEGLLEGFD 171 (185)
Q Consensus 132 ~~~----~~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~ 171 (185)
... .+++.. .+....+.....++++++||++|.|++++.+
T Consensus 170 ~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 170 VNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 321 111111 1111111111257899999999999999654
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.89 E-value=2.1e-23 Score=163.16 Aligned_cols=152 Identities=16% Similarity=0.196 Sum_probs=102.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHH--------Hhhh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYW--------RNYF 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~ 81 (185)
+..++|+++|++|+|||||+|+|.+........ |..+....+..++..+.+|||||........ ..++
T Consensus 222 r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~ 301 (462)
T 3geh_A 222 RTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAA 301 (462)
T ss_dssp HHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhh
Confidence 356899999999999999999998865432222 2333344567788999999999986654332 2357
Q ss_pred cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeeccc
Q 029920 82 EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAY 161 (185)
Q Consensus 82 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 161 (185)
..+|++++|+|++++.+... ..++..+ .+.|+++|+||+|+....... ... .+. ...+++++||+
T Consensus 302 ~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~----~~~--~~~--~~~~~i~iSAk 366 (462)
T 3geh_A 302 NTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT----SLE--YPE--NITQIVHTAAA 366 (462)
T ss_dssp CSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST----TCC--CCT--TCCCEEEEBTT
T ss_pred hcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH----HHH--Hhc--cCCcEEEEECC
Confidence 88999999999998766554 2222222 247999999999986542221 111 111 34579999999
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 029920 162 TGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 162 ~~~~i~~l~~~l~~~~~~~ 180 (185)
+|.|+++++++|.+.+...
T Consensus 367 tg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 367 QKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp TTBSHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988654
No 149
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.89 E-value=9.2e-23 Score=153.08 Aligned_cols=134 Identities=22% Similarity=0.309 Sum_probs=106.0
Q ss_pred cCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhcccc
Q 029920 46 PTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERL 115 (185)
Q Consensus 46 ~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~ 115 (185)
+|.|+....+..+++.+++||++|++.++..|..|+++++++|+|+|++ +..++.+...++..+......
T Consensus 147 ~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~ 226 (340)
T 4fid_A 147 KTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFL 226 (340)
T ss_dssp CCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGG
T ss_pred ceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhcc
Confidence 4667777788888999999999999999999999999999999999998 678999999999999887666
Q ss_pred CCCeEEEEeecCCCCCC-----------------CCHHHHHHhcCccc----------ccCc-----------cceEEEe
Q 029920 116 SGASLLILANKQDINGA-----------------LTPTEIAKVLNLEA----------MDKT-----------RHWKIVG 157 (185)
Q Consensus 116 ~~~~~ivv~nK~D~~~~-----------------~~~~~~~~~~~~~~----------~~~~-----------~~~~~~~ 157 (185)
.+.|+++++||+|+... ...++....+.... .... +.+.+++
T Consensus 227 ~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~ 306 (340)
T 4fid_A 227 KGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNP 306 (340)
T ss_dssp TTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEE
T ss_pred CCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEE
Confidence 78999999999997431 11222211111100 0111 3578999
Q ss_pred ecccCCCCHHHHHHHHHHHHhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
|||++..|++.+|+.+.+.+.+
T Consensus 307 TsA~dt~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 307 TNATDGSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999998765
No 150
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.89 E-value=7.6e-23 Score=156.19 Aligned_cols=146 Identities=10% Similarity=0.058 Sum_probs=108.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
+|+++|++++|||||+++|. ....|.......+..++..+.+|||||++++.......+..+|++++|+| ++ .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~-----~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~-g 95 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG-----KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQ-G 95 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS-----EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TT-C
T ss_pred EEEEECCCCCCHHHHHHHHH-----hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CC-C
Confidence 99999999999999999998 34455666666677788899999999999998888888899999999999 54 3
Q ss_pred cHHHHHHHHHHHHhccccCCCeE-EEEee-cCCCCCCCCHH----HHHHhcCcccccCccceEEEe--ecccC---CCCH
Q 029920 98 RLDDCKMELDNLLKEERLSGASL-LILAN-KQDINGALTPT----EIAKVLNLEAMDKTRHWKIVG--CSAYT---GEGL 166 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~-ivv~n-K~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~Sa~~---~~~i 166 (185)
.+....+++..... .+.|. ++++| |+|+ +....+ ++.+.+... ....+++++ +||++ +.|+
T Consensus 96 ~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~---~~~~~~ii~~~~SA~~~~~g~gi 167 (370)
T 2elf_A 96 LDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGT---VLQDWECISLNTNKSAKNPFEGV 167 (370)
T ss_dssp CCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTS---TTTTCEEEECCCCTTSSSTTTTH
T ss_pred CcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhc---CCCceEEEecccccccCcCCCCH
Confidence 34444444443322 25676 89999 9999 432212 222222211 113579999 99999 9999
Q ss_pred HHHHHHHHHHHh
Q 029920 167 LEGFDWLVQDIA 178 (185)
Q Consensus 167 ~~l~~~l~~~~~ 178 (185)
+++++.|.+.+.
T Consensus 168 ~~L~~~l~~~~~ 179 (370)
T 2elf_A 168 DELKARINEVAE 179 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc
Confidence 999999988764
No 151
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=2e-22 Score=156.18 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=110.5
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCc----cccc--CcceEEEEEEEc-----------------------CeEE
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTS----VISP--TLGFNIKTVTYQ-----------------------KYTL 62 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~----~~~~--t~~~~~~~~~~~-----------------------~~~~ 62 (185)
.....++|+++|+.++|||||+++|.+.... ...+ |.........+. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 3566799999999999999999999865432 1122 444333332220 1689
Q ss_pred EEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH----HHH
Q 029920 63 NIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP----TEI 138 (185)
Q Consensus 63 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~----~~~ 138 (185)
.+|||||++.+.......+..+|++++|+|+++........+.+..+ ... ...|+++++||+|+.+.... +++
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~~--~~~~iivviNK~Dl~~~~~~~~~~~~i 162 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL-QII--GQKNIIIAQNKIELVDKEKALENYRQI 162 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH-HHH--TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH-HHc--CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence 99999999999888888888999999999999643122222323222 211 13589999999998764321 122
Q ss_pred HHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 139 AKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
...+... .....+++++||++|.|+++++++|.+.+.
T Consensus 163 ~~~l~~~---~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 163 KEFIEGT---VAENAPIIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp HHHHTTS---TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred HHHHHhc---CcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 2222211 114678999999999999999999998664
No 152
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.89 E-value=1.4e-24 Score=171.91 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=111.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVW 89 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 89 (185)
+++++|+++|++|+|||||+++|.+..+... ..|..+....+.. ++..+.+|||||++.|..++..++..+|++++
T Consensus 2 ~r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 2 PRSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 3578999999999999999999987554211 1122222222333 44689999999999999999999999999999
Q ss_pred EEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--HHHHHhcCcccccCccceEEEeecccCCCCHH
Q 029920 90 VVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP--TEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 167 (185)
|+|+++....+. ...+.... ..+.|+++++||+|+...... ..................+++++||++|.|++
T Consensus 82 VVDa~dg~~~qt-~e~l~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 82 VVAADDGVMKQT-VESIQHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp ECBSSSCCCHHH-HHHHHHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEECCCCccHHH-HHHHHHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999998655443 23333332 237899999999998643221 11111111111111135789999999999999
Q ss_pred HHHHHHHHHHh
Q 029920 168 EGFDWLVQDIA 178 (185)
Q Consensus 168 ~l~~~l~~~~~ 178 (185)
++++++...+.
T Consensus 157 eLle~I~~l~~ 167 (537)
T 3izy_P 157 ALAEATIALAE 167 (537)
T ss_dssp HHHHHHHHHHT
T ss_pred hHHHHHHHhhh
Confidence 99999988764
No 153
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.89 E-value=2.8e-22 Score=145.56 Aligned_cols=166 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccc-----cCcceEEEEEEEcCeEEEEEEcCCc--------hhhHHHHHh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVIS-----PTLGFNIKTVTYQKYTLNIWDVGGQ--------RTIRSYWRN 79 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~-----~t~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~ 79 (185)
....++|+++|.+|+|||||+|+|.+....... .|.......+..++..+.+|||||. +.+......
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 456899999999999999999999998774322 3445566677888999999999996 333333333
Q ss_pred hh----cCCCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC---cccccCcc
Q 029920 80 YF----EQTDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN---LEAMDKTR 151 (185)
Q Consensus 80 ~~----~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~---~~~~~~~~ 151 (185)
++ +.+|++++|+|+++.... .....++...... ...+.|+++++||+|+.... .++...... ...+...+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~-~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGS-LHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCC-HHHHHHHCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCC-HHHHHhhcccHHHHHHHHHc
Confidence 33 899999999999853221 2223334443322 22368999999999996642 222211100 00111112
Q ss_pred ceEEEeecccC-----CCCHHHHHHHHHHHHhhh
Q 029920 152 HWKIVGCSAYT-----GEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 152 ~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~~ 180 (185)
+..++.+++.. +.|+++|++.|.+.+.++
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 33344444333 689999999999988753
No 154
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.88 E-value=8.4e-23 Score=161.23 Aligned_cols=157 Identities=19% Similarity=0.125 Sum_probs=104.1
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEE
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKT 54 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~ 54 (185)
........++|+++|++|+|||||+++|++.... ....|.......
T Consensus 26 ~l~~~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~ 105 (483)
T 3p26_A 26 FVKSALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSH 105 (483)
T ss_dssp HHHHSCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEE
T ss_pred HHhcCCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEE
Confidence 3344677899999999999999999999654110 012244445556
Q ss_pred EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHH-----HHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 55 VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDD-----CKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 55 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
+...+..+.+|||||++.+...+..++..+|++++|+|+++..++.. .......+.... ...|+++|+||+|+
T Consensus 106 ~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl 183 (483)
T 3p26_A 106 FSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDN 183 (483)
T ss_dssp EECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGG
T ss_pred EecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCc
Confidence 67788999999999999999999999999999999999998644322 111112222221 23569999999998
Q ss_pred CCCCC--HHHHHHhcCc----ccccCccceEEEeecccCCCCHHH
Q 029920 130 NGALT--PTEIAKVLNL----EAMDKTRHWKIVGCSAYTGEGLLE 168 (185)
Q Consensus 130 ~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~Sa~~~~~i~~ 168 (185)
.+... .+++...+.. ..+ ....++++++||++|.|+++
T Consensus 184 ~~~~~~~~~~i~~~~~~~l~~~g~-~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 184 VDWSQQRFEEIKSKLLPYLVDIGF-FEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp GTTCHHHHHHHHHHHHHHHHHHTC-CGGGEEEEECCSSSCTTSSS
T ss_pred ccchHHHHHHHHHHHHHHHHHcCC-CcccceEEEEeeecCCCccc
Confidence 76321 1122222111 111 11368999999999999975
No 155
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.88 E-value=4e-23 Score=144.36 Aligned_cols=130 Identities=23% Similarity=0.364 Sum_probs=96.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcC----CCEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQ----TDGLV 88 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----~d~~i 88 (185)
....++|+++|++|||||||+++|.+..+.....+...+. ...+....+.+|||||++.+...+..++.. +|+++
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i 123 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLS-AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLI 123 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCce-eeeecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEE
Confidence 4567899999999999999999999887643211111111 012256789999999998877666666655 89999
Q ss_pred EEEeCC-CcccHHHHHHHHHHHHhccc---cCCCeEEEEeecCCCCCCCCHHHHHHhcC
Q 029920 89 WVVDSS-DLRRLDDCKMELDNLLKEER---LSGASLLILANKQDINGALTPTEIAKVLN 143 (185)
Q Consensus 89 ~v~d~~-~~~s~~~~~~~~~~~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~ 143 (185)
+|+|++ ++.++.....++..++.... ..+.|+++|+||+|+.+.....++...+.
T Consensus 124 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~ 182 (193)
T 2ged_A 124 FMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALE 182 (193)
T ss_dssp EEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHH
T ss_pred EEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCHHHHHHHHH
Confidence 999999 88899998888888876532 25799999999999987777666655543
No 156
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=8.7e-22 Score=142.27 Aligned_cols=168 Identities=12% Similarity=0.119 Sum_probs=101.4
Q ss_pred hhccCceeEEEEEcCCCCChHHHHHHHhCCCCccc-----ccCcceEEEEEEEcCeEEEEEEcCCc-----------hhh
Q 029920 10 IKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSVI-----SPTLGFNIKTVTYQKYTLNIWDVGGQ-----------RTI 73 (185)
Q Consensus 10 ~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~~D~~g~-----------~~~ 73 (185)
.......++|+++|++|+|||||+|+|++..+... ..|.......+.+++..+.+|||||. ..+
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~ 102 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI 102 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence 33456789999999999999999999999877422 23444566677888899999999993 334
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcC--cccccCc
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLN--LEAMDKT 150 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~ 150 (185)
......+.+.+|++++|+|+++.... .....++...+.. ....|+++|+||+|+.......+...... ...+...
T Consensus 103 ~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~--~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 103 IRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGE--RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHH--HHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhh--hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 44555556788999999999764332 1222222222221 12468999999999865433321111100 0011111
Q ss_pred cceEEEeecccC-----CCCHHHHHHHHHHHHhh
Q 029920 151 RHWKIVGCSAYT-----GEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 151 ~~~~~~~~Sa~~-----~~~i~~l~~~l~~~~~~ 179 (185)
++..++.+++.. +.++.++++.+.+.+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 333455555543 36899999998887755
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.88 E-value=4.6e-22 Score=159.57 Aligned_cols=158 Identities=22% Similarity=0.253 Sum_probs=105.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCC--Cc------ccc------cCcceE----EEEEEEc-----CeEEEEEEcCCc
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGED--TS------VIS------PTLGFN----IKTVTYQ-----KYTLNIWDVGGQ 70 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~~------~t~~~~----~~~~~~~-----~~~~~~~D~~g~ 70 (185)
++..+|+++|+.++|||||+++|.... .. ... .+.+.+ ...+.+. .+.+++|||||+
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 356799999999999999999997521 10 011 112222 2233443 378999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCc
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKT 150 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 150 (185)
..|...+..++..+|++++|+|+++..+.+....|... .. .++|+++++||+|+.... ..+....+... + ..
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~-~~----~~ipiIvViNKiDl~~a~-~~~v~~ei~~~-l-g~ 153 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTA-ME----MDLEVVPVLNKIDLPAAD-PERVAEEIEDI-V-GI 153 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHH-T-CC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHH-HH----CCCCEEEeeeccCccccc-HHHHHHHHHHH-h-CC
Confidence 99999999999999999999999987666655444333 22 378999999999997654 32222222111 0 00
Q ss_pred cceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 151 RHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 151 ~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
...+++++||++|.|++++++++.+.+..
T Consensus 154 ~~~~vi~vSAktg~GI~~Ll~~I~~~lp~ 182 (599)
T 3cb4_D 154 DATDAVRCSAKTGVGVQDVLERLVRDIPP 182 (599)
T ss_dssp CCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred CcceEEEeecccCCCchhHHHHHhhcCCC
Confidence 12247999999999999999999988753
No 158
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.88 E-value=6e-22 Score=158.71 Aligned_cols=159 Identities=16% Similarity=0.174 Sum_probs=108.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc------ccc----------cCcceEEEEEEEc-----CeEEEEEEcCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS------VIS----------PTLGFNIKTVTYQ-----KYTLNIWDVGG 69 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~------~~~----------~t~~~~~~~~~~~-----~~~~~~~D~~g 69 (185)
.++..+|+++|+.++|||||+++|+... .. ... .|.......+.+. .+.+++|||||
T Consensus 3 ~~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPG 82 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPG 82 (600)
T ss_dssp GGGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCC
Confidence 3467899999999999999999996521 10 011 1111111223332 27899999999
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK 149 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 149 (185)
+..|...+..++..+|++++|+|+++..+.+....|... .. .+.|+++++||+|+.... ..+....+.... .
T Consensus 83 h~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a-~~----~~ipiIvviNKiDl~~a~-~~~v~~el~~~l--g 154 (600)
T 2ywe_A 83 HVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKA-VE----QDLVIIPVINKIDLPSAD-VDRVKKQIEEVL--G 154 (600)
T ss_dssp SGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHH-HH----TTCEEEEEEECTTSTTCC-HHHHHHHHHHTS--C
T ss_pred cHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHH-HH----CCCCEEEEEeccCccccC-HHHHHHHHHHhh--C
Confidence 999999999999999999999999998776665544333 22 379999999999997653 333222221110 1
Q ss_pred ccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 150 TRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 150 ~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
....+++++||++|.|+++++++|.+.+..
T Consensus 155 ~~~~~vi~vSAktg~GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 155 LDPEEAILASAKEGIGIEEILEAIVNRIPP 184 (600)
T ss_dssp CCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred CCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence 112248999999999999999999988753
No 159
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.87 E-value=2.7e-22 Score=155.22 Aligned_cols=162 Identities=17% Similarity=0.131 Sum_probs=110.8
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhCC--------CCcc------------cccCcceEEEEEEEcCeEEEEEEcCCc
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKINGE--------DTSV------------ISPTLGFNIKTVTYQKYTLNIWDVGGQ 70 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~~--------~~~~------------~~~t~~~~~~~~~~~~~~~~~~D~~g~ 70 (185)
.+....++|+++|++|+|||||+++|.+. .+.. ...|.......+...+..+.+|||||+
T Consensus 6 ~~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~ 85 (405)
T 2c78_A 6 VRTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGH 85 (405)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCS
T ss_pred cCCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCCh
Confidence 34567899999999999999999999862 1111 112344444455667789999999999
Q ss_pred hhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCC-HH----HHHHhcCc
Q 029920 71 RTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALT-PT----EIAKVLNL 144 (185)
Q Consensus 71 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~-~~----~~~~~~~~ 144 (185)
+.+...+..++..+|++++|+|+++.... ....++..... .+.| +++++||+|+..... .+ ++...+..
T Consensus 86 ~~f~~~~~~~~~~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 86 ADYIKNMITGAAQMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp GGGHHHHHHHHTTCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999986543 33444443322 2677 899999999975211 11 11121111
Q ss_pred ccccCccceEEEeecccCCCC------------------HHHHHHHHHHHHh
Q 029920 145 EAMDKTRHWKIVGCSAYTGEG------------------LLEGFDWLVQDIA 178 (185)
Q Consensus 145 ~~~~~~~~~~~~~~Sa~~~~~------------------i~~l~~~l~~~~~ 178 (185)
..+.. ...+++++||++|.| ++++++.|.+.+.
T Consensus 161 ~~~~~-~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 161 YEFPG-DEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp TTSCT-TTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred hcccc-cCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 11111 246899999999987 7788888777653
No 160
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=2.2e-22 Score=152.43 Aligned_cols=123 Identities=22% Similarity=0.323 Sum_probs=92.7
Q ss_pred cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCC----------CcccHHHHHHHHHHHHhccccCCCeEEEEeecC
Q 029920 58 QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSS----------DLRRLDDCKMELDNLLKEERLSGASLLILANKQ 127 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~ 127 (185)
..+.+++|||+|++.++..+..|+++++++|+|+|++ +..++++...++..+.......+.|+++++||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3478999999999999999999999999999999998 788999999999998876555789999999999
Q ss_pred CCCCCC----C-------------------HHHHHHhcCccc--c------c--CccceEEEeecccCCCCHHHHHHHHH
Q 029920 128 DINGAL----T-------------------PTEIAKVLNLEA--M------D--KTRHWKIVGCSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 128 D~~~~~----~-------------------~~~~~~~~~~~~--~------~--~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (185)
|+.... . .++......... . . ....+.+++|||+++.||+++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 973210 0 111111111100 0 0 01346679999999999999999999
Q ss_pred HHHhhh
Q 029920 175 QDIASR 180 (185)
Q Consensus 175 ~~~~~~ 180 (185)
+.+.+.
T Consensus 341 ~~I~~~ 346 (354)
T 2xtz_A 341 ETLRRR 346 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887653
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.87 E-value=7.9e-23 Score=159.47 Aligned_cols=156 Identities=17% Similarity=0.241 Sum_probs=101.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC--CCcc--------------------------------cccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTSV--------------------------------ISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~~--------------------------------~~~t~~~~~~~~~~~ 58 (185)
.+..++|+++|++|+|||||+++|++. .+.. ...|.......+...
T Consensus 3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~ 82 (435)
T 1jny_A 3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK 82 (435)
T ss_dssp -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence 456799999999999999999999753 2210 112344444456677
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHH---HHHHHhccccCC-CeEEEEeecCCCCCCC-
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKME---LDNLLKEERLSG-ASLLILANKQDINGAL- 133 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~~-~~~ivv~nK~D~~~~~- 133 (185)
+..+.+|||||++.+...+..++..+|++++|+|+++ .+|+....+ ....+......+ .|+++++||+|+.+..
T Consensus 83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence 8899999999999999999999999999999999998 566643221 111111111123 4699999999997632
Q ss_pred CH---HH----HHHhcCcccccCccceEEEeecccCCCCHHHHH
Q 029920 134 TP---TE----IAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 134 ~~---~~----~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
.. +. +...+....+.. ..++++++||++|.|+.+++
T Consensus 162 ~~~~~~~~~~~i~~~~~~~~~~~-~~~~~i~iSA~~g~~v~e~~ 204 (435)
T 1jny_A 162 DEKRYKEIVDQVSKFMRSYGFNT-NKVRFVPVVAPSGDNITHKS 204 (435)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCC-TTCEEEECBTTTTBTTTBCC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCc-CCceEEEeecccCccccccc
Confidence 11 11 222211111111 24789999999999997543
No 162
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.87 E-value=5.7e-24 Score=167.15 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=106.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccc---ccCcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---SPTLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWV 90 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 90 (185)
.++++|+++|++++|||||+++|.+..+... ..|.......+.+++..+.+|||||++.|..++..++..+|++++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILV 81 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVLV 81 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEEE
Confidence 4678999999999999999999976433211 1122222223445667899999999999998888889999999999
Q ss_pred EeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc-cccC--ccceEEEeecccCCCCHH
Q 029920 91 VDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE-AMDK--TRHWKIVGCSAYTGEGLL 167 (185)
Q Consensus 91 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~Sa~~~~~i~ 167 (185)
+|+++....+ ....+... ...+.|+++++||+|+..... +++...+... .... ....+++++||++|.|++
T Consensus 82 Vda~~g~~~q-T~e~l~~~----~~~~vPiIVviNKiDl~~~~~-~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~ 155 (501)
T 1zo1_I 82 VAADDGVMPQ-TIEAIQHA----KAAQVPVVVAVNKIDKPEADP-DRVKNELSQYGILPEEWGGESQFVHVSAKAGTGID 155 (501)
T ss_dssp EETTTBSCTT-THHHHHHH----HHTTCCEEEEEECSSSSTTCC-CCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCT
T ss_pred eecccCccHH-HHHHHHHH----HhcCceEEEEEEeccccccCH-HHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcc
Confidence 9998832211 11222222 123789999999999965321 1222222111 1111 124789999999999999
Q ss_pred HHHHHHHHH
Q 029920 168 EGFDWLVQD 176 (185)
Q Consensus 168 ~l~~~l~~~ 176 (185)
++++++...
T Consensus 156 eLle~I~~~ 164 (501)
T 1zo1_I 156 ELLDAILLQ 164 (501)
T ss_dssp THHHHTTTT
T ss_pred hhhhhhhhh
Confidence 999998653
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.87 E-value=3.6e-22 Score=154.14 Aligned_cols=158 Identities=17% Similarity=0.090 Sum_probs=107.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC-------CCc------------ccccCcceEEEEEEEcCeEEEEEEcCCchhhHH
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE-------DTS------------VISPTLGFNIKTVTYQKYTLNIWDVGGQRTIRS 75 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~-------~~~------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 75 (185)
..++|+++|++++|||||+++|.+. .+. ....|.......+...+..+.+|||||++.+..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4689999999999999999999763 111 011122233333455678999999999999988
Q ss_pred HHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccccC
Q 029920 76 YWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAMDK 149 (185)
Q Consensus 76 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~~~ 149 (185)
.+..++..+|++++|+|+++....+ ..+.+... .. .++| +++++||+|+.+.... + ++.+.+....+..
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~q-t~e~l~~~-~~---~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQ-TREHLLLA-RQ---IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHH-HHHHHHHH-HH---TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHH-HHHHHHHH-HH---cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 8888999999999999999854333 33333222 22 2678 7899999998752111 1 1222221111111
Q ss_pred ccceEEEeecccCCCC----------HHHHHHHHHHHHh
Q 029920 150 TRHWKIVGCSAYTGEG----------LLEGFDWLVQDIA 178 (185)
Q Consensus 150 ~~~~~~~~~Sa~~~~~----------i~~l~~~l~~~~~ 178 (185)
..++++++||++|.| ++++++.|.+.+.
T Consensus 157 -~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 157 -EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp -TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred -ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 246899999999775 8899999888664
No 164
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.87 E-value=4e-22 Score=160.01 Aligned_cols=157 Identities=21% Similarity=0.222 Sum_probs=107.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcc-----cccCcceEEEEEE----------------EcCeEEEEEEcCCchh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSV-----ISPTLGFNIKTVT----------------YQKYTLNIWDVGGQRT 72 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~-----~~~t~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 72 (185)
.+.++|+++|++|+|||||+++|.+..+.. .+++.+....... +....+.+|||||++.
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 357899999999999999999998754432 2223333322211 1112699999999999
Q ss_pred hHHHHHhhhcCCCEEEEEEeCCC---cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH--------------
Q 029920 73 IRSYWRNYFEQTDGLVWVVDSSD---LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP-------------- 135 (185)
Q Consensus 73 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-------------- 135 (185)
|..++..++..+|++++|+|+++ +++++.+. .+ . ..+.|+++++||+|+......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l-~---~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~ 154 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----IL-R---MYRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQD 154 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HH-H---HTTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSC
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HH-H---HcCCeEEEEecccccccccccccCCchHHHHHHhH
Confidence 99888888899999999999998 44544322 22 1 237899999999998642110
Q ss_pred H-----------HHHHhcCcccc---------cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 136 T-----------EIAKVLNLEAM---------DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 136 ~-----------~~~~~~~~~~~---------~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
. ++...+....+ .....++++++||++|.|+++++++|...+.
T Consensus 155 ~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 155 IQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 1 11111111000 0124578999999999999999999998765
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.87 E-value=2.6e-21 Score=150.93 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=102.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc------------------------------------cccCcceEEEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV------------------------------------ISPTLGFNIKTVT 56 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~------------------------------------~~~t~~~~~~~~~ 56 (185)
.+..++|+++|++|+|||||+++|++..... ..-|.......+.
T Consensus 21 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~ 100 (434)
T 1zun_B 21 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS 100 (434)
T ss_dssp SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEee
Confidence 3456899999999999999999997543100 0112333444556
Q ss_pred EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCH-
Q 029920 57 YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTP- 135 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~- 135 (185)
..+..+.+|||||++.+...+..++..+|++++|+|+++.... ....++... ... ...|+++|+||+|+.+....
T Consensus 101 ~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~-qt~~~l~~~-~~~--~~~~iIvviNK~Dl~~~~~~~ 176 (434)
T 1zun_B 101 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQT-QTRRHSYIA-SLL--GIKHIVVAINKMDLNGFDERV 176 (434)
T ss_dssp CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCH-HHHHHHHHH-HHT--TCCEEEEEEECTTTTTSCHHH
T ss_pred cCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHH-HHc--CCCeEEEEEEcCcCCcccHHH
Confidence 6788999999999999998888899999999999999986432 233333322 221 12469999999999763211
Q ss_pred -HHHHHhcCcc--ccc-CccceEEEeecccCCCCHHHH
Q 029920 136 -TEIAKVLNLE--AMD-KTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 136 -~~~~~~~~~~--~~~-~~~~~~~~~~Sa~~~~~i~~l 169 (185)
.+....+... ... ....++++++||++|.|++++
T Consensus 177 ~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 177 FESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 1111111110 010 013578999999999999874
No 166
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.4e-22 Score=162.12 Aligned_cols=153 Identities=20% Similarity=0.152 Sum_probs=104.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc----------------------------------cccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV----------------------------------ISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~----------------------------------~~~t~~~~~~~~~~~ 58 (185)
....++|+++|++|+|||||+++|++..... .+.|.......+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 4567999999999999999999998653321 122444455566778
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+..+.+|||||++.+...+..++..+|++|+|+|+++.. ++ ......+. ..... ...|+++|+||+|+.+.
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~-~~~~l--gi~~iIVVvNKiDl~~~ 320 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL--GIHNLIIAMNKMDNVDW 320 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHH-HHHTT--TCCEEEEEEECTTTTTT
T ss_pred CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHH-HHHHc--CCCeEEEEEecccccch
Confidence 889999999999999999999999999999999998732 11 11122111 12211 13569999999999763
Q ss_pred CC--HHHHHHhc----CcccccCccceEEEeecccCCCCHHHH
Q 029920 133 LT--PTEIAKVL----NLEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 133 ~~--~~~~~~~~----~~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
.. .+++...+ ....+. ...++++++||++|.|++++
T Consensus 321 ~~~~~~ei~~~l~~~l~~~g~~-~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 321 SQQRFEEIKSKLLPYLVDIGFF-EDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCC-GGGCEEEECCTTTCTTTSSC
T ss_pred hHHHHHHHHHHHHHHHHhhccc-ccCccEEeeecccCCCcccc
Confidence 21 11112111 111111 13578999999999999865
No 167
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.87 E-value=2.4e-21 Score=144.15 Aligned_cols=156 Identities=15% Similarity=0.155 Sum_probs=101.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc-----ccccCcce--------------------------------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS-----VISPTLGF-------------------------------------- 50 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~~~~t~~~-------------------------------------- 50 (185)
...++|+|+|.+|+|||||+|+|.+..+. ..+...+.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 45689999999999999999999998763 11111110
Q ss_pred ------------EEEEEEEcCeEEEEEEcCCch-------------hhHHHHHhhhcCCCEEE-EEEeCCCcccHHHHHH
Q 029920 51 ------------NIKTVTYQKYTLNIWDVGGQR-------------TIRSYWRNYFEQTDGLV-WVVDSSDLRRLDDCKM 104 (185)
Q Consensus 51 ------------~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 104 (185)
.......+...+.+|||||.. .+......+++.++.++ +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000001113689999999963 35567778888888776 6999987544333222
Q ss_pred HHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCc-cceEEEeecccCCCCHHHHHHHHHHH
Q 029920 105 ELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKT-RHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
++..+ ...+.|+++|+||+|+.+... ..+.. ........ ...+++++||++|.|++++++++.+.
T Consensus 184 ~~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVL---ENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHH----CTTCSSEEEEEECGGGSCTTCCCHHHH---TTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHh----CCCCCeEEEEEEccccCCCCchHHHHH---hCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 22222 223689999999999865433 22221 11111111 23478999999999999999998763
No 168
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.86 E-value=5.6e-22 Score=151.93 Aligned_cols=134 Identities=23% Similarity=0.282 Sum_probs=101.9
Q ss_pred CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCC----------cccHHHHHHHHHHHHhccccC
Q 029920 47 TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSD----------LRRLDDCKMELDNLLKEERLS 116 (185)
Q Consensus 47 t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~~~~ 116 (185)
|.|+....+.++++.+++|||+|++.++..|..|+++++++|+|||+++ ..+|..+..|+..+.......
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 3444555667788999999999999999999999999999999999999 889999999999998765556
Q ss_pred CCeEEEEeecCCCCCC-----C------------------------C---HHHHHHhcCcc--cc-----cCccceEEEe
Q 029920 117 GASLLILANKQDINGA-----L------------------------T---PTEIAKVLNLE--AM-----DKTRHWKIVG 157 (185)
Q Consensus 117 ~~~~ivv~nK~D~~~~-----~------------------------~---~~~~~~~~~~~--~~-----~~~~~~~~~~ 157 (185)
+.|+++++||+|+... . . .++........ .. .....+.+++
T Consensus 284 ~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~ 363 (402)
T 1azs_C 284 TISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHF 363 (402)
T ss_dssp SCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEE
T ss_pred CCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEE
Confidence 8999999999997321 0 0 01111110000 00 0113577899
Q ss_pred ecccCCCCHHHHHHHHHHHHhhh
Q 029920 158 CSAYTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 158 ~Sa~~~~~i~~l~~~l~~~~~~~ 180 (185)
|||+++.||+++|+++.+.+.+.
T Consensus 364 TSA~d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 364 TCAVDTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEeecCcCHHHHHHHHHHHHHHH
Confidence 99999999999999998887653
No 169
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.86 E-value=1.2e-21 Score=144.26 Aligned_cols=158 Identities=16% Similarity=0.161 Sum_probs=87.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--c-------ccCcceEEEEEEE--cC--eEEEEEEcCCch-------h
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--I-------SPTLGFNIKTVTY--QK--YTLNIWDVGGQR-------T 72 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~-------~~t~~~~~~~~~~--~~--~~~~~~D~~g~~-------~ 72 (185)
+...++|+++|.+|+|||||+|+|++..... . .+|.+........ ++ ..+.+|||||.. .
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 4457999999999999999999988766532 2 4555544444333 33 589999999962 2
Q ss_pred hHHHH-------HhhhcC-------------CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 73 IRSYW-------RNYFEQ-------------TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 73 ~~~~~-------~~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
+.... ..++.. +|+++++++.++.. +......+...+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~-~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHG-LKPLDIEFMKRLHE----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSS-CCHHHHHHHHHHTT----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCC-CCHHHHHHHHHHhc----cCCEEEEEeccCCCCH
Confidence 33332 334433 78999999776522 22222222333332 6999999999998654
Q ss_pred CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
.........+.. .+. ..+++++.+||+++.|+++++++|.+.+
T Consensus 160 ~e~~~~~~~i~~-~l~-~~~i~v~~~sa~~~~~~~~l~~~l~~~~ 202 (274)
T 3t5d_A 160 EECQQFKKQIMK-EIQ-EHKIKIYEFPETDDEEENKLVKKIKDRL 202 (274)
T ss_dssp HHHHHHHHHHHH-HHH-HTTCCCCCC-----------CHHHHHTC
T ss_pred HHHHHHHHHHHH-HHH-HcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence 333222222211 111 1566789999999999999999988764
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.85 E-value=1.5e-21 Score=153.02 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=103.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 58 (185)
....++|+++|++|+|||||+++|++. .+. ....|.......+...
T Consensus 4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 456799999999999999999999753 111 1123444555566778
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD---DCKMELDNLLKEERLSGAS-LLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 131 (185)
+..+.+|||||++.+...+..++..+|++++|+|+++.. +|+ .....+... .. .+.| +++++||+|+.+
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~---~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT---LGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH---TTCCEEEEEEECGGGGT
T ss_pred CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH---cCCCeEEEEEEcccccc
Confidence 899999999999999999999999999999999998742 221 222222222 21 2454 999999999874
Q ss_pred CCC--HHHHHHhcC----cccccCccceEEEeecccCCCCHHHH
Q 029920 132 ALT--PTEIAKVLN----LEAMDKTRHWKIVGCSAYTGEGLLEG 169 (185)
Q Consensus 132 ~~~--~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~~i~~l 169 (185)
... .+++...+. ...+. ...++++++||++|.|++++
T Consensus 160 ~~~~~~~~i~~~~~~~l~~~g~~-~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 160 WDESRFQEIVKETSNFIKKVGYN-PKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCC-GGGCCEEECCTTTCBTTTBC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC-ccCceEEEeecccCcCcccc
Confidence 211 112222111 11111 02478999999999998743
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.85 E-value=1.6e-22 Score=158.93 Aligned_cols=154 Identities=18% Similarity=0.188 Sum_probs=90.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC--CCc--------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE--DTS--------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~~--------------------------------~~~~t~~~~~~~~~~~ 58 (185)
.+..++|+++|+.++|||||+++|... .+. ....|.......+..+
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 567799999999999999999998631 110 1122333434456667
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cHH---HHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RLD---DCKMELDNLLKEERLSGAS-LLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 131 (185)
+..+.+|||||++.|...+..++..+|++|+|+|+++.. +|+ .....+... ...++| +++++||+|+..
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~----~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA----RTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH----HHTTCSSEEEEEECTTSTT
T ss_pred CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH----HHcCCCEEEEEEECccCCC
Confidence 889999999999999988888899999999999999852 222 122222221 223576 999999999964
Q ss_pred CC-CHH---H----HHHhcCcc-cccCccceEEEeecccCCCCHHHHH
Q 029920 132 AL-TPT---E----IAKVLNLE-AMDKTRHWKIVGCSAYTGEGLLEGF 170 (185)
Q Consensus 132 ~~-~~~---~----~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~i~~l~ 170 (185)
.. ..+ + +...+... .+....+++++++||++|.|+++++
T Consensus 196 ~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 196 VQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 32 111 1 22211111 1100126889999999999998754
No 172
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.85 E-value=1.3e-20 Score=133.31 Aligned_cols=161 Identities=16% Similarity=0.142 Sum_probs=98.3
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCC-cccccCcceEE--EEEEEcCeEEEEEEcCCchh----------hHHHHH
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDT-SVISPTLGFNI--KTVTYQKYTLNIWDVGGQRT----------IRSYWR 78 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~D~~g~~~----------~~~~~~ 78 (185)
......+|+++|++|||||||+++|++..+ ..+.++.+... ..+.+++ .+.+|||||... +.....
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET-TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC-CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 345668999999999999999999998873 33344444322 2233333 678999999732 233333
Q ss_pred hhh---cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccC-ccceE
Q 029920 79 NYF---EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDK-TRHWK 154 (185)
Q Consensus 79 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~ 154 (185)
.++ ..++++++++|++++.+... ..+..++. ..+.|+++++||+|+.+........... ...+.. ...+.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~~~~~~~---~~~~~~~~v~nK~D~~s~~~~~~~~~~~-~~~~~~~~~~~~ 174 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLD--QQMIEWAV---DSNIAVLVLLTKADKLASGARKAQLNMV-REAVLAFNGDVQ 174 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHH---HTTCCEEEEEECGGGSCHHHHHHHHHHH-HHHHGGGCSCEE
T ss_pred HHHHhhhcccEEEEEEECCCCCchhH--HHHHHHHH---HcCCCeEEEEecccCCCchhHHHHHHHH-HHHHHhcCCCCc
Confidence 444 46899999999998655432 11222222 2368999999999986532111101111 011111 12467
Q ss_pred EEeecccCCCCHHHHHHHHHHHHhh
Q 029920 155 IVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
++++||+++.|++++++.|.+.+.+
T Consensus 175 ~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 175 VETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred eEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999887755
No 173
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.84 E-value=1.8e-19 Score=143.19 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=83.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-----------------------ccccCcceEEEEEEEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-----------------------VISPTLGFNIKTVTYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-----------------------~~~~t~~~~~~~~~~~~~~~~~~D~ 67 (185)
..+.++|+++|++|+|||||+++|+... +. ....+.......+.+++..+.+|||
T Consensus 10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 3567999999999999999999997531 10 0011222233456778899999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
||+..+......++..+|++++|+|+++..... ....+.. ....++|+++++||+|+....
T Consensus 90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~----~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEV----TRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHH----HTTTTCCEEEEEECTTSCCSC
T ss_pred CCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHH----HHHcCCCEEEEEcCcCCcccc
Confidence 999999888888999999999999999854322 2222222 223478999999999997653
No 174
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.83 E-value=1.6e-20 Score=157.91 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=106.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC-------Cc--------ccccCcceE----EEEEEEcCeEEEEEEcCCchhh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED-------TS--------VISPTLGFN----IKTVTYQKYTLNIWDVGGQRTI 73 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~-------~~--------~~~~t~~~~----~~~~~~~~~~~~~~D~~g~~~~ 73 (185)
....++|+++|++++|||||+++|.+.. +. ....+.+.+ ...+...+..+.+|||||++.+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF 372 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY 372 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence 4567999999999999999999997631 00 011122222 2234556789999999999999
Q ss_pred HHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCCCCCCCCH-H----HHHHhcCcccc
Q 029920 74 RSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQDINGALTP-T----EIAKVLNLEAM 147 (185)
Q Consensus 74 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~~~~~-~----~~~~~~~~~~~ 147 (185)
......++..+|++|+|+|+++.... ...+++..+.. .++| +|+++||+|+.+.... + ++...+....+
T Consensus 373 ~~~mi~gas~AD~aILVVDAtdGv~~-QTrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~ 447 (1289)
T 3avx_A 373 VKNMITGAAQMDGAILVVAATDGPMP-QTREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDF 447 (1289)
T ss_dssp HHHHHHTSCCCSEEEEEEETTTCSCT-THHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhCCEEEEEEcCCccCcH-HHHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccc
Confidence 98888899999999999999985432 23333333222 2677 7999999999753211 1 12222211111
Q ss_pred cCccceEEEeecccCC--------CCHHHHHHHHHHHHh
Q 029920 148 DKTRHWKIVGCSAYTG--------EGLLEGFDWLVQDIA 178 (185)
Q Consensus 148 ~~~~~~~~~~~Sa~~~--------~~i~~l~~~l~~~~~ 178 (185)
.. ..++++++||++| .|++++++.|.+.+.
T Consensus 448 ~~-~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 448 PG-DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp CT-TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cc-cceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 11 3578999999999 468889988887553
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.83 E-value=8.7e-20 Score=149.23 Aligned_cols=115 Identities=22% Similarity=0.148 Sum_probs=86.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC--CC------------c-------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE--DT------------S-------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~--~~------------~-------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
..+..+|+++|++|+|||||+++|... .+ . ....|.......+.+.+..+++|||||+.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 456789999999999999999999731 11 0 12234444555667788999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.+...+..+++.+|++++|+|+++..+...... |..... .+.|+++++||+|+...
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~-~~~~~~----~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETV-WRQAEK----YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHH-HHHHHH----cCCCEEEEEECCCcccC
Confidence 999999999999999999999998777665433 333322 37999999999998765
No 176
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.83 E-value=1.2e-22 Score=163.46 Aligned_cols=160 Identities=23% Similarity=0.192 Sum_probs=87.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc----------------------------------ccccCcceEEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS----------------------------------VISPTLGFNIKTVTYQ 58 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~----------------------------------~~~~t~~~~~~~~~~~ 58 (185)
.+..++|+++|++|+|||||+++|++.... ....|.......+..+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999531100 0111333334445556
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc---cH---HHHHHHHHHHHhccccCCCe-EEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR---RL---DDCKMELDNLLKEERLSGAS-LLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D~~~ 131 (185)
+..+.+|||||++.+...+..++..+|++|+|+|+++.. .+ ......+... .. .++| +|+|+||+|+..
T Consensus 254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~-~~---lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL-RA---LGISEIVVSVNKLDLMS 329 (592)
T ss_dssp -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHH-HH---SSCCCEEEEEECGGGGT
T ss_pred CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHH-HH---cCCCeEEEEEecccccc
Confidence 789999999999998888888889999999999998632 11 1112222222 22 2455 999999999865
Q ss_pred CCC--HH----HHHHhc-CcccccCccceEEEeecccCCCCHH--------------HHHHHHHHHH
Q 029920 132 ALT--PT----EIAKVL-NLEAMDKTRHWKIVGCSAYTGEGLL--------------EGFDWLVQDI 177 (185)
Q Consensus 132 ~~~--~~----~~~~~~-~~~~~~~~~~~~~~~~Sa~~~~~i~--------------~l~~~l~~~~ 177 (185)
... .. ++...+ ....+. ...++++++||++|.|++ +|++.|.+.+
T Consensus 330 ~~~~~~~~i~~el~~~l~~~~g~~-~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 330 WSEDRFQEIKNIVSDFLIKMVGFK-TSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp TCHHHHHHHHHHHHHHHTTTSCCC-GGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCC-ccceEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 321 11 122222 111111 135789999999999998 6777776543
No 177
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.1e-21 Score=147.02 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=83.8
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCCCcc--c--------ccCcceEEEEE--EEcC--eEEEEEEcCCc-------
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGEDTSV--I--------SPTLGFNIKTV--TYQK--YTLNIWDVGGQ------- 70 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~--------~~t~~~~~~~~--~~~~--~~~~~~D~~g~------- 70 (185)
.....++|+|+|++|+|||||+++|.+..... . .++.+...... ...+ ..+.+|||||.
T Consensus 33 ~~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~ 112 (361)
T 2qag_A 33 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 112 (361)
T ss_dssp HHCCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----------
T ss_pred cCCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccH
Confidence 35667999999999999999999987654321 1 13333332222 2233 47999999998
Q ss_pred hhhHHHHH-------hhhcCC-------------CEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 71 RTIRSYWR-------NYFEQT-------------DGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 71 ~~~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
+.+..+.. .++..+ |+++|+++.+ ..++......+...+. .+.|+|+|+||+|+.
T Consensus 113 e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l~----~~~piIlV~NK~Dl~ 187 (361)
T 2qag_A 113 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAIH----NKVNIVPVIAKADTL 187 (361)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHTC----S-SCEEEEEECCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHhc----cCCCEEEEEECCCCC
Confidence 44444443 444332 3455555532 3445444433333332 478999999999986
Q ss_pred CCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhcc
Q 029920 131 GALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
............. ......+++++++||+++.| ++.+.++.+.+.+..+
T Consensus 188 ~~~ev~~~k~~i~--~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 188 TLKERERLKKRIL--DEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp CHHHHHHHHHHHH--HHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHH--HHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 5422222111111 11122567899999999999 8888888888766543
No 178
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.82 E-value=8.7e-20 Score=136.73 Aligned_cols=161 Identities=15% Similarity=0.186 Sum_probs=99.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCC-c----ccccCcc---eEEE--------------------------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDT-S----VISPTLG---FNIK-------------------------------- 53 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~-~----~~~~t~~---~~~~-------------------------------- 53 (185)
...++|+|+|++|+|||||+|+|.+..+ + ..+.... ....
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE 101 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence 4568999999999999999999999876 1 1111110 0000
Q ss_pred -----------------------EEEEcCeEEEEEEcCCchh-------------hHHHHHhhhcCCCEEEEEEeCCCcc
Q 029920 54 -----------------------TVTYQKYTLNIWDVGGQRT-------------IRSYWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 54 -----------------------~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
........+.+|||||... +......++..+|++++|+|..+..
T Consensus 102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~ 181 (315)
T 1jwy_B 102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD 181 (315)
T ss_dssp HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence 0111346799999999753 5566778889999999999975422
Q ss_pred cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccC-ccceEEEeecccC---CCCHHHHHHH
Q 029920 98 RLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDK-TRHWKIVGCSAYT---GEGLLEGFDW 172 (185)
Q Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~---~~~i~~l~~~ 172 (185)
........+...+. ..+.|+++|+||+|+..... ..+.. ....... ....++..+|+.+ +.|++++++.
T Consensus 182 ~~~~~~~~i~~~~~---~~~~~~i~v~NK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~ 255 (315)
T 1jwy_B 182 LANSDALQLAKEVD---PEGKRTIGVITKLDLMDKGTDAMEVL---TGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKS 255 (315)
T ss_dssp STTCSHHHHHHHHC---SSCSSEEEEEECTTSSCSSCCCHHHH---TTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHH
T ss_pred hhhhHHHHHHHHhC---CCCCcEEEEEcCcccCCcchHHHHHH---hCCCccCCCCeEEEecCChhhhccCCCHHHHHHH
Confidence 11011111222222 23789999999999875433 11211 1111110 1234566677777 8999999999
Q ss_pred HHHHHhhh
Q 029920 173 LVQDIASR 180 (185)
Q Consensus 173 l~~~~~~~ 180 (185)
+.+.+...
T Consensus 256 ~~~~~~~~ 263 (315)
T 1jwy_B 256 EILYFKNH 263 (315)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhCC
Confidence 88887653
No 179
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=3.3e-19 Score=145.30 Aligned_cols=113 Identities=15% Similarity=0.144 Sum_probs=85.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc--------------c-------cccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS--------------V-------ISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~--------------~-------~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
..+..+|+++|+.|+|||||+++|.+.... . ...+.......+......+++|||||+.
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 456789999999999999999999742221 0 0123334455567788999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
.+......+++.+|++++|+|+++..... ...++..... .+.|+++++||+|+.
T Consensus 86 ~f~~~~~~~l~~ad~~ilVvD~~~g~~~q-t~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 86 DFVGEIRGALEAADAALVAVSAEAGVQVG-TERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred chHHHHHHHHhhcCcEEEEEcCCcccchh-HHHHHHHHHH----ccCCEEEEecCCchh
Confidence 99999999999999999999988754433 2233333322 379999999999987
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3e-19 Score=130.62 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=81.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHHHHHhhh--------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRSYWRNYF-------- 81 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~-------- 81 (185)
.+.++|+++|++|+|||||+|+|.+.......+ +.......+..++..+.+|||||+.++......++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~ 113 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLV 113 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHh
Confidence 468999999999999999999999987643332 44455666778889999999999876543322222
Q ss_pred -cCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEeecCCCCC
Q 029920 82 -EQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEER-LSGASLLILANKQDING 131 (185)
Q Consensus 82 -~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~ 131 (185)
..+|++++|+|+++.. +... ..++..+..... ....|+++|+||+|+..
T Consensus 114 ~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 114 NRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp TCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred cCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 2789999999987644 3322 233333332211 11248999999999853
No 181
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.81 E-value=9.8e-20 Score=148.99 Aligned_cols=162 Identities=20% Similarity=0.236 Sum_probs=106.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcce--------------EEEE------------------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGF--------------NIKT------------------------ 54 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~--------------~~~~------------------------ 54 (185)
....++|+|+|.+|+|||||+|+|.+......+...++ +...
T Consensus 66 ~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~ 145 (695)
T 2j69_A 66 QQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE 145 (695)
T ss_dssp HHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence 45679999999999999999999998876433221111 1100
Q ss_pred -------------------EEEcC----eEEEEEEcCCchh---hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHH
Q 029920 55 -------------------VTYQK----YTLNIWDVGGQRT---IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDN 108 (185)
Q Consensus 55 -------------------~~~~~----~~~~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~ 108 (185)
+.... ..+.+|||||... .......+++.+|++++|+|++++.+......+ ..
T Consensus 146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l-~~ 224 (695)
T 2j69_A 146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYL-EN 224 (695)
T ss_dssp HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHH-HH
T ss_pred HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHH-HH
Confidence 00000 3589999999655 345667788999999999999987766654332 22
Q ss_pred HHhccccCCCeEEEEeecCCCCCCC-----CHHH-------HHHh----cCccccc----CccceEEEeeccc-------
Q 029920 109 LLKEERLSGASLLILANKQDINGAL-----TPTE-------IAKV----LNLEAMD----KTRHWKIVGCSAY------- 161 (185)
Q Consensus 109 ~~~~~~~~~~~~ivv~nK~D~~~~~-----~~~~-------~~~~----~~~~~~~----~~~~~~~~~~Sa~------- 161 (185)
.+.. .+.|+++|+||+|+.... ...+ +... +.. ... .....+++++||+
T Consensus 225 ~l~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~-~~~~~g~~~~~~~v~~vSAk~al~~~~ 300 (695)
T 2j69_A 225 YIKG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAE-YCTVEGQNIYDERVFELSSIQALRRRL 300 (695)
T ss_dssp HTTT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGG-GGBSSSCBCGGGTEEECCHHHHHHHHH
T ss_pred HHHh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHH-hhcccccccCCCcEEEEeChHHHHhhc
Confidence 2222 267899999999985432 1101 1111 110 000 0123468999999
Q ss_pred -------CCCCHHHHHHHHHHHHhh
Q 029920 162 -------TGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 162 -------~~~~i~~l~~~l~~~~~~ 179 (185)
++.|++++++.+.+.+.+
T Consensus 301 ~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 301 KNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 182
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.81 E-value=3.8e-19 Score=137.24 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=108.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-eEEEEEEcCCchh-------hHHHHHhhhcCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-YTLNIWDVGGQRT-------IRSYWRNYFEQTD 85 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-~~~~~~D~~g~~~-------~~~~~~~~~~~~d 85 (185)
-.|+++|++|||||||++++++.... ....|.......+..++ ..+.++|+||..+ +........+.++
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 35899999999999999999987542 11223334455566665 7899999999632 1122233456799
Q ss_pred EEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCC
Q 029920 86 GLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGE 164 (185)
Q Consensus 86 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 164 (185)
.+++++|++ ...+..+..+..+..... .....|.++++||+|+........+...+. . .+.+++.+||+++.
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~-----~-~g~~vi~iSA~~g~ 310 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALA-----R-EGLAVLPVSALTGA 310 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHH-----T-TTSCEEECCTTTCT
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHH-----h-cCCeEEEEECCCcc
Confidence 999999998 555666655555544331 123588999999999865411122222221 1 35679999999999
Q ss_pred CHHHHHHHHHHHHhhhc
Q 029920 165 GLLEGFDWLVQDIASRI 181 (185)
Q Consensus 165 ~i~~l~~~l~~~~~~~~ 181 (185)
|+++++++|.+.+.+..
T Consensus 311 gi~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 311 GLPALKEALHALVRSTP 327 (416)
T ss_dssp THHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHHHHHHhcc
Confidence 99999999999987643
No 183
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=9.7e-19 Score=143.09 Aligned_cols=115 Identities=22% Similarity=0.170 Sum_probs=86.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC--CCCc-------------------ccccCcceEEEEEEEcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING--EDTS-------------------VISPTLGFNIKTVTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~--~~~~-------------------~~~~t~~~~~~~~~~~~~~~~~~D~~g~~ 71 (185)
..+..+|+++|++|+|||||+++|.. ..+. ....|.......+.+++..+++|||||+.
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 86 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV 86 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence 46678999999999999999999973 1110 01123333445567788999999999999
Q ss_pred hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 72 TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.+......+++.+|++++|+|+++..+...... +..... .+.|+++++||+|+...
T Consensus 87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~-~~~~~~----~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETV-WRQATT----YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHH-HHHHHH----TTCCEEEEEECTTSTTC
T ss_pred chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHH-HHHHHH----cCCCEEEEEECCCcccc
Confidence 998888999999999999999998766654433 333322 37999999999998765
No 184
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.80 E-value=2.3e-18 Score=141.05 Aligned_cols=115 Identities=18% Similarity=0.049 Sum_probs=84.5
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCC--Cc-------------------ccccCcceEEEEEEEcC-------eEEEE
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGED--TS-------------------VISPTLGFNIKTVTYQK-------YTLNI 64 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~--~~-------------------~~~~t~~~~~~~~~~~~-------~~~~~ 64 (185)
.++..+|+++|+.|+|||||+++|.... +. ....|.......+.+.+ +.+++
T Consensus 7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI 86 (704)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence 4567899999999999999999996421 11 01112323333455555 89999
Q ss_pred EEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 65 WDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 65 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
|||||+..|...+..+++.+|++|+|+|+++....+.. ..+.... ..+.|+++++||+|+...
T Consensus 87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~~~~----~~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWRQAN----KYKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHHHHH----HcCCCEEEEEeCCCcccc
Confidence 99999999999999999999999999999986544432 2333332 237899999999998654
No 185
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.78 E-value=7.3e-18 Score=123.79 Aligned_cols=118 Identities=20% Similarity=0.214 Sum_probs=79.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccccc----CcceEEEEEEEcCeEEEEEEcCCchhhHH-------HHHhh--
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISP----TLGFNIKTVTYQKYTLNIWDVGGQRTIRS-------YWRNY-- 80 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~----t~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~-- 80 (185)
...++|+++|.+|+|||||+|+|++..+....+ +.......+..++..+.+|||||...+.. ....+
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 458999999999999999999999887643332 22233445667788999999999765431 12222
Q ss_pred hcCCCEEEEEEeCCCcccHHHH-HHHHHHHHhccc-cCCCeEEEEeecCCCCCC
Q 029920 81 FEQTDGLVWVVDSSDLRRLDDC-KMELDNLLKEER-LSGASLLILANKQDINGA 132 (185)
Q Consensus 81 ~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~-~~~~~~ivv~nK~D~~~~ 132 (185)
...+|++++|+|++.. ++... ..++..+..... ....|+++|+||+|+...
T Consensus 117 ~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 117 DKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred cCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 2468999999998753 33332 233333332211 112699999999998654
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.77 E-value=1.1e-18 Score=133.04 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=96.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCc-ccccCc--c------------------------------------------
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTS-VISPTL--G------------------------------------------ 49 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~t~--~------------------------------------------ 49 (185)
..++|+|+|++|||||||+|+|.+..+. ....+. .
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4569999999999999999999997762 111000 0
Q ss_pred -------------eEEEEEEEcCeEEEEEEcCCchhh-------------HHHHHhhhcCCCEEEEEEeCCCcccHHHHH
Q 029920 50 -------------FNIKTVTYQKYTLNIWDVGGQRTI-------------RSYWRNYFEQTDGLVWVVDSSDLRRLDDCK 103 (185)
Q Consensus 50 -------------~~~~~~~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 103 (185)
............+.+|||||.... ......|+..+|++++|+|..+......
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 000111112356899999997665 6677888999999999998765332211
Q ss_pred HHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920 104 MELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (185)
.+..++......+.|+++|+||+|+.+... ..+..... ....+.+++++|+.++.++++.+....
T Consensus 191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~s~~~i~~~~~~~~ 256 (360)
T 3t34_A 191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGR-----SFKLKYPWVGVVNRSQADINKNVDMIA 256 (360)
T ss_dssp -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTS-----SSCCSSCCEEECCCCHHHHHTTCCHHH
T ss_pred -HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCc-----cccccCCeEEEEECChHHhccCCCHHH
Confidence 112223332334689999999999865432 22222111 122456789999999888876655433
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.77 E-value=1.7e-18 Score=131.73 Aligned_cols=156 Identities=15% Similarity=0.156 Sum_probs=95.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-----ccccCcce-------------------------------------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-----VISPTLGF------------------------------------- 50 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-----~~~~t~~~------------------------------------- 50 (185)
....++|+|+|.+|+|||||+|+|.+..+. ..+.....
T Consensus 28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~ 107 (353)
T 2x2e_A 28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 107 (353)
T ss_dssp GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence 345689999999999999999999998763 11111110
Q ss_pred -------------EEEEEEEcCeEEEEEEcCCch-------------hhHHHHHhhhcCCC-EEEEEEeCCCcccHHHHH
Q 029920 51 -------------NIKTVTYQKYTLNIWDVGGQR-------------TIRSYWRNYFEQTD-GLVWVVDSSDLRRLDDCK 103 (185)
Q Consensus 51 -------------~~~~~~~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~ 103 (185)
.......+...+.+|||||.. .+..+...|+..++ ++++|+|++....-....
T Consensus 108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~ 187 (353)
T 2x2e_A 108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 187 (353)
T ss_dssp HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence 000011124679999999952 34556667776655 555567766422211211
Q ss_pred HHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccccCccc-eEEEeecccCCCCHHHHHHHHHH
Q 029920 104 MELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAMDKTRH-WKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 104 ~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
..+..+ ...+.|+++|+||+|+.+... ..+... ........+ .+++++||+++.|++++++++.+
T Consensus 188 ~i~~~~----~~~~~~~i~V~NK~Dl~~~~~~~~~~~~---~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 188 KVAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHH----CTTCTTEEEEEECGGGSCTTCCCHHHHT---TCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHh----CcCCCceEEEeccccccCcchhHHHHHh---CCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 222222 234789999999999865433 122211 111111123 46899999999999999998876
No 188
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.77 E-value=1.6e-17 Score=132.59 Aligned_cols=116 Identities=16% Similarity=0.182 Sum_probs=86.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC------------------CCc-------ccccCcceEEEEEEEcCeEEEEEEc
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE------------------DTS-------VISPTLGFNIKTVTYQKYTLNIWDV 67 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~------------------~~~-------~~~~t~~~~~~~~~~~~~~~~~~D~ 67 (185)
..+..+|+|+|+.++|||||..+|+-. ... ...-|+......+.++++.++++||
T Consensus 28 ~~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDT 107 (548)
T 3vqt_A 28 AARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDT 107 (548)
T ss_dssp HHTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECC
T ss_pred ccccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeC
Confidence 456788999999999999999998411 110 1112444455567889999999999
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
||+..|.......++-+|++++|+|+.+.-..+. ...|+.... .++|.++++||+|.....
T Consensus 108 PGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT-~~v~~~a~~----~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 108 PGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQT-RKLMDVCRM----RATPVMTFVNKMDREALH 168 (548)
T ss_dssp CCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHH-HHHHHHHHH----TTCCEEEEEECTTSCCCC
T ss_pred CCcHHHHHHHHHHHHhcCceEEEeecCCCccccc-HHHHHHHHH----hCCceEEEEecccchhcc
Confidence 9999999999999999999999999998644343 333344433 379999999999987653
No 189
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.76 E-value=5.7e-20 Score=141.43 Aligned_cols=79 Identities=25% Similarity=0.277 Sum_probs=46.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccc----cCcceEEEEE--E-------------------Ec---CeEEEEEEcC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVIS----PTLGFNIKTV--T-------------------YQ---KYTLNIWDVG 68 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~----~t~~~~~~~~--~-------------------~~---~~~~~~~D~~ 68 (185)
++|+++|.+|+|||||+|+|++... ..+ .|........ . ++ ..++.+||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~-~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV-EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC-cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 5899999999999999999998763 211 1222222211 1 12 2689999999
Q ss_pred Cchhh----HHHHH---hhhcCCCEEEEEEeCCCc
Q 029920 69 GQRTI----RSYWR---NYFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 69 g~~~~----~~~~~---~~~~~~d~~i~v~d~~~~ 96 (185)
|.... ..+.. .+++.+|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 97532 22222 346889999999999875
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.72 E-value=2.3e-18 Score=131.10 Aligned_cols=155 Identities=17% Similarity=0.165 Sum_probs=95.6
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC------CCcccc--c--C-------------------cceEEE----------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE------DTSVIS--P--T-------------------LGFNIK---------- 53 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~------~~~~~~--~--t-------------------~~~~~~---------- 53 (185)
..+.++|+++|.+|+|||||+++|... +..... + + .+....
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~ 155 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGG 155 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccc
Confidence 456789999999999999999998521 111000 0 0 001000
Q ss_pred ----------EEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 54 ----------TVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 54 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
.+...+..+.++||||.... .......+|++++|+|....+...... . ...+.|.++|
T Consensus 156 ~~~~t~d~i~~~~~~~~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~--~~~~~p~ivV 223 (355)
T 3p32_A 156 VTRATRETVVLLEAAGFDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIK-------K--GVLELADIVV 223 (355)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCC-------T--TSGGGCSEEE
T ss_pred hhHHHHHHHHHHhhCCCCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHH-------H--hHhhcCCEEE
Confidence 00224678999999995432 223358899999999987654432211 1 1124689999
Q ss_pred eecCCCCCCCCHHHHHHhcCccc--cc---CccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 124 ANKQDINGALTPTEIAKVLNLEA--MD---KTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
+||+|+............+.... .. .....+++++||++|.|+++++++|.+.+..
T Consensus 224 lNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 224 VNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 99999864322222222221100 00 0014579999999999999999999988754
No 191
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.71 E-value=2.2e-17 Score=131.92 Aligned_cols=120 Identities=17% Similarity=0.234 Sum_probs=81.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc--ccccCcceEE-EEEEE---------------------------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS--VISPTLGFNI-KTVTY--------------------------------- 57 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~--~~~~t~~~~~-~~~~~--------------------------------- 57 (185)
...++|+|+|.+|+|||||+|+|.+..+. ..++...+.. ..+..
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 45689999999999999999999998764 2222111100 00000
Q ss_pred ------cC---eEEEEEEcCCchh-----------hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCC
Q 029920 58 ------QK---YTLNIWDVGGQRT-----------IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSG 117 (185)
Q Consensus 58 ------~~---~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 117 (185)
.+ ..+.++||||... +......++..+|++++|+|+++.........++..+. ..+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~~ 218 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GHE 218 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TCG
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hcC
Confidence 00 3589999999764 55667778899999999999987544444444444332 225
Q ss_pred CeEEEEeecCCCCCCCCHHH
Q 029920 118 ASLLILANKQDINGALTPTE 137 (185)
Q Consensus 118 ~~~ivv~nK~D~~~~~~~~~ 137 (185)
.|+++|+||+|+.......+
T Consensus 219 ~pvilVlNK~Dl~~~~el~~ 238 (550)
T 2qpt_A 219 DKIRVVLNKADMVETQQLMR 238 (550)
T ss_dssp GGEEEEEECGGGSCHHHHHH
T ss_pred CCEEEEEECCCccCHHHHHH
Confidence 78999999999876433333
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.70 E-value=3.6e-18 Score=127.13 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=78.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC-CCccc---------ccCcceEEEEEEE--c--CeEEEEEEcCCc-------h
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE-DTSVI---------SPTLGFNIKTVTY--Q--KYTLNIWDVGGQ-------R 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~-~~~~~---------~~t~~~~~~~~~~--~--~~~~~~~D~~g~-------~ 71 (185)
..-.++|+++|++|+|||||+++|.+. .++.. .++.......+.. . ...+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 445689999999999999999998875 33221 1222211111111 1 367899999997 4
Q ss_pred hhHHHHH-------hhhcC-------------CCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 72 TIRSYWR-------NYFEQ-------------TDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 72 ~~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
.+..... .++.. +++++|+.+.+. .+++.... .++... ..+.|+++|+||+|+..
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~---~~l~~l-~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV---AFMKAI-HNKVNIVPVIAKADTLT 169 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH---HHHHHH-TTTSCEEEEECCGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH---HHHHHH-HhcCCEEEEEEeCCCCC
Confidence 4433332 33322 344666665432 12333321 222221 13579999999999865
Q ss_pred CCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhcc
Q 029920 132 ALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRIY 182 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~~ 182 (185)
..+.....+.. ...+. ..+++++++||+++ |++++|..+.+.+.+..+
T Consensus 170 ~~e~~~~~~~~-~~~~~-~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p 217 (301)
T 2qnr_A 170 LKERERLKKRI-LDEIE-EHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP 217 (301)
T ss_dssp HHHHHHHHHHH-HHHHH-HTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred HHHHHHHHHHH-HHHHH-HcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence 32211111111 11111 14578999999999 999999999998876543
No 193
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.70 E-value=3.9e-17 Score=123.88 Aligned_cols=152 Identities=20% Similarity=0.208 Sum_probs=87.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC------CCcccc--cC---------------------cceEE------EE-----
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE------DTSVIS--PT---------------------LGFNI------KT----- 54 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~------~~~~~~--~t---------------------~~~~~------~~----- 54 (185)
....|+++|+||+|||||+|+|.+. ...... ++ ..... ..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~t 152 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGVT 152 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------C
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccch
Confidence 4689999999999999999999752 110000 00 00000 00
Q ss_pred ---------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEee
Q 029920 55 ---------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILAN 125 (185)
Q Consensus 55 ---------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~n 125 (185)
+...+..+.++||||..... ....+.+|++++|+|+.++...+.... .+ ...|.++|+|
T Consensus 153 r~~~~~~~~~~~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlN 220 (349)
T 2www_A 153 RTTNEAILLCEGAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVT 220 (349)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC---------------------CCSCSEEEEC
T ss_pred HHHHHHHHhhccCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEe
Confidence 01245789999999964222 233578999999999986533221111 11 1467899999
Q ss_pred cCCCCCCCCHH----HHHHhcCcccc-cCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 126 KQDINGALTPT----EIAKVLNLEAM-DKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 126 K~D~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
|+|+.+..... .+...+..... ......+++.+||++|.|+++++++|.+.+.
T Consensus 221 K~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 221 KSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp CCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred eecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 99985421111 12111111000 0012457899999999999999999988764
No 194
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.69 E-value=1.6e-17 Score=118.29 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=95.2
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCC-----cccccCc------------ceEEEEEE--------------
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDT-----SVISPTL------------GFNIKTVT-------------- 56 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~-----~~~~~t~------------~~~~~~~~-------------- 56 (185)
+......+..+|+++|++|+|||||+++|.+... ....... +.....+.
T Consensus 22 ~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (221)
T 2wsm_A 22 REALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYH 101 (221)
T ss_dssp HHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHT
T ss_pred HHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHH
Confidence 3344455678999999999999999999875421 1000000 11111111
Q ss_pred ----EcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 57 ----YQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 57 ----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
..+..+.++||+|+..... .+-...+.+++|+|+.+..... ..+. .. .+.|.++|+||+|+.+.
T Consensus 102 ~~~~~~~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~--~~~~----~~---~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 102 RLKKFSDCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV--EKHP----EI---FRVADLIVINKVALAEA 169 (221)
T ss_dssp TGGGGTTCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH--HHCH----HH---HHTCSEEEEECGGGHHH
T ss_pred HHHhcCCCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh--hhhh----hh---hhcCCEEEEecccCCcc
Confidence 1345788999999511110 1112568899999998653211 1111 11 14789999999998532
Q ss_pred --CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 133 --LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
....+....+... ...++++++||++|.|+++++++|.+.+..
T Consensus 170 ~~~~~~~~~~~~~~~----~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 170 VGADVEKMKADAKLI----NPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCCHHHHHHHHHHH----CTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHh----CCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 2344443333211 135689999999999999999999987754
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.8e-16 Score=118.31 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=80.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcCeEEEEEEcCCchh-------hHHHHHhhhcC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQKYTLNIWDVGGQRT-------IRSYWRNYFEQ 83 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 83 (185)
+...+|+++|.||+|||||+|+|++.... ....|.......+.+.+.+++++||||... ........++.
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 44568999999999999999999987653 234566677788899999999999999432 22334455788
Q ss_pred CCEEEEEEeCCCcccH-HHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 84 TDGLVWVVDSSDLRRL-DDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 84 ~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
+|++++|+|+++|... +.+...+..+- ....+.|.++++||.|.
T Consensus 150 ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~ 194 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEK 194 (376)
T ss_dssp CSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSS
T ss_pred cCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhh
Confidence 9999999999986332 22222222211 12235677778888875
No 196
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.69 E-value=2.9e-16 Score=128.46 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=97.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccc---cCc------------------------------------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVIS---PTL------------------------------------------ 48 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~---~t~------------------------------------------ 48 (185)
-..++|+|+|.+++|||||+|+|.+..+-... .|.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45689999999999999999999997661110 010
Q ss_pred -----c-----eEEEEEEEcCeEEEEEEcCCchh-------------hHHHHHhhh-cCCCEEEEEEeCCCcccHHHHHH
Q 029920 49 -----G-----FNIKTVTYQKYTLNIWDVGGQRT-------------IRSYWRNYF-EQTDGLVWVVDSSDLRRLDDCKM 104 (185)
Q Consensus 49 -----~-----~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 104 (185)
+ ........+...+.++||||... .......|+ ..+|++++|+|+++.........
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 0 00111111234688999999432 333445555 57899999999987433222212
Q ss_pred HHHHHHhccccCCCeEEEEeecCCCCCCCCH-HHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHH
Q 029920 105 ELDNLLKEERLSGASLLILANKQDINGALTP-TEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.+..+ ...+.|+++|+||+|+.+.... ..+.. ..... .....+++.+||++|.|++++++.+.+
T Consensus 209 ll~~L----~~~g~pvIlVlNKiDlv~~~~~~~~il~---~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 209 IAKEV----DPQGQRTIGVITKLDLMDEGTDARDVLE---NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHH----CTTCSSEEEEEECTTSSCTTCCSHHHHT---TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHH----HhcCCCEEEEEeCcccCCcchhhHHHHH---HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 22222 2236899999999998754332 22221 11111 113357899999999999999999886
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.68 E-value=1.3e-16 Score=133.10 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=85.2
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhCCC------------Cc-------ccccCcceEEEEEEEc--------------
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKINGED------------TS-------VISPTLGFNIKTVTYQ-------------- 58 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~~~------------~~-------~~~~t~~~~~~~~~~~-------------- 58 (185)
...+.++|+|+|++|+|||||+++|.... +. ....|+......+.+.
T Consensus 15 ~~~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 15 KVTNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp CGGGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 45677899999999999999999997531 10 0112333223333333
Q ss_pred --CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 59 --KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 59 --~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
+..+++|||||+..|...+..+++.+|++++|+|+++..+++....| ..... .+.|+++++||+|+.
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~-~~~~~----~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVL-RQALG----ERIKPVVVINKVDRA 163 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCEEEEEEECHHHH
T ss_pred CCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----cCCCeEEEEECCCcc
Confidence 57899999999999999999999999999999999998777764433 33322 379999999999975
No 198
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.67 E-value=1.9e-16 Score=110.10 Aligned_cols=111 Identities=21% Similarity=0.379 Sum_probs=85.5
Q ss_pred CCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHH---HHHHhccc-cCCCeEEEEeecC-CCCCCCCHHHHHHhc
Q 029920 68 GGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMEL---DNLLKEER-LSGASLLILANKQ-DINGALTPTEIAKVL 142 (185)
Q Consensus 68 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~~~~~~-~~~~~~ivv~nK~-D~~~~~~~~~~~~~~ 142 (185)
+|+..++..|..|++++|++|||+|.+|.+.++ +...+ ..++.... ..+.|++|++||. |+.......++.+.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L 188 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL 188 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence 478899999999999999999999999976654 55555 33343322 3578999999995 788888999999999
Q ss_pred CcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
+.... . +.|.+..|||.+|.|+.+.++||.+.+..+.
T Consensus 189 ~L~~l-~-R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 189 HLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp TGGGG-C-SCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred CCcCC-C-CCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 88766 3 7999999999999999999999998886653
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.66 E-value=3.7e-17 Score=123.75 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=91.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC------CCCccccc----Cc-------------------ceEEEE---------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING------EDTSVISP----TL-------------------GFNIKT--------- 54 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~~~~~----t~-------------------~~~~~~--------- 54 (185)
..+...|+++|++|+|||||++.|.+ ........ +. ......
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g 132 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGG 132 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----C
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccch
Confidence 45667899999999999999999853 22111000 00 000000
Q ss_pred -----------EEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 55 -----------VTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 55 -----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
+...+..+.++||||....... ....+|++++|+|+.+...++... . ...+.|.++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~----~-----~~~~~p~ivv 200 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK----K-----GLMEVADLIV 200 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC----H-----HHHHHCSEEE
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH----H-----hhhcccCEEE
Confidence 0134678999999997654432 358899999999997643221110 0 0014678999
Q ss_pred eecCCCCCCCCHHHHHHhcCc--cccc---CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 124 ANKQDINGALTPTEIAKVLNL--EAMD---KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 124 ~nK~D~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+||+|+............+.. .... .....+++++||++|.|+++++++|.+.+.
T Consensus 201 ~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 201 INKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 999998653222211111110 0000 001357899999999999999999988664
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.66 E-value=4.4e-17 Score=118.94 Aligned_cols=119 Identities=17% Similarity=0.089 Sum_probs=71.0
Q ss_pred eEEEEEEcCCchhhHHHH------HhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 60 YTLNIWDVGGQRTIRSYW------RNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 60 ~~~~~~D~~g~~~~~~~~------~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
+.+.++||||........ ...+.. +++++++|+....+.......+..........+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 589999999987654321 124456 8999999986533333222211111111122368999999999986542
Q ss_pred CHHHHHHhcCc-c----c------------------ccC-ccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 134 TPTEIAKVLNL-E----A------------------MDK-TRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 134 ~~~~~~~~~~~-~----~------------------~~~-~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
...++...+.. . . ... ....+++++||+++.|+++++++|.+.+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~ 257 (262)
T 1yrb_A 188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT 257 (262)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence 22222221100 0 0 001 122478999999999999999999887754
No 201
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.65 E-value=5.4e-17 Score=131.79 Aligned_cols=158 Identities=18% Similarity=0.215 Sum_probs=109.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC--CCCc---------cc----------ccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 16 EMRILMVGLDNSGKTTIVLKING--EDTS---------VI----------SPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~--~~~~---------~~----------~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
..+|+|+|+.++|||||..+|.. +... .+ .-|+......+.++++.++++||||+..|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 35799999999999999999841 1110 01 113333444567788999999999999999
Q ss_pred HHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHH---HHHHhcCccc-----
Q 029920 75 SYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPT---EIAKVLNLEA----- 146 (185)
Q Consensus 75 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~---~~~~~~~~~~----- 146 (185)
......++-+|++++|+|+.+.-.-+ ....|+....+ ++|.++++||+|........ ++.+.+....
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~q-T~~v~~~a~~~----~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~~~ 156 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQ-TRILFHALRKM----GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIKQK 156 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSH-HHHHHHHHHHH----TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHH-HHHHHHHHHHc----CCCeEEEEeccccccCCHHHHHHHHHHHhCCCccccce
Confidence 99999999999999999999743322 23334444443 78999999999986554322 2222221100
Q ss_pred --------------------------------------------------ccCccceEEEeecccCCCCHHHHHHHHHHH
Q 029920 147 --------------------------------------------------MDKTRHWKIVGCSAYTGEGLLEGFDWLVQD 176 (185)
Q Consensus 147 --------------------------------------------------~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~ 176 (185)
.....-.|++..||+++.|++.+++.+.+.
T Consensus 157 ~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~~~ 236 (638)
T 3j25_A 157 VELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVITNK 236 (638)
T ss_dssp CCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHHHS
T ss_pred eEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhhcc
Confidence 000123578889999999999999999876
Q ss_pred Hh
Q 029920 177 IA 178 (185)
Q Consensus 177 ~~ 178 (185)
+.
T Consensus 237 ~p 238 (638)
T 3j25_A 237 FY 238 (638)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 202
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=122.71 Aligned_cols=156 Identities=15% Similarity=0.142 Sum_probs=71.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCccc---------ccCcceEEEEE--EEcC--eEEEEEEcCCchhhH------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVI---------SPTLGFNIKTV--TYQK--YTLNIWDVGGQRTIR------ 74 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~---------~~t~~~~~~~~--~~~~--~~~~~~D~~g~~~~~------ 74 (185)
.-.++|+++|++|+|||||+++|++..+... .++.......+ ...+ ..+.+||++|.....
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 3457899999999999999999998766311 11221111111 1122 478999999975431
Q ss_pred -HH-------H-----------HhhhcCCC--EEEEEEeCCCcccHHHHH-HHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 75 -SY-------W-----------RNYFEQTD--GLVWVVDSSDLRRLDDCK-MELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 75 -~~-------~-----------~~~~~~~d--~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
.. . ..++..++ +++|+.+.+. .++.... .++..+ . .+.|+|+|+||+|+...
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L-~----~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRL-H----EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHH-T----TTSEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHH-h----ccCcEEEEEEcccCccH
Confidence 11 0 11233444 4444444331 2344333 233332 2 26899999999998653
Q ss_pred CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHH
Q 029920 133 LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDI 177 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 177 (185)
........... ..+.. .+++++++|++++.++++++..+.+.+
T Consensus 183 ~ev~~~k~~i~-~~~~~-~~i~~~~~sa~~~~~v~~~~~~l~~~i 225 (418)
T 2qag_C 183 EECQQFKKQIM-KEIQE-HKIKIYEFPETDDEEENKLVKKIKDRL 225 (418)
T ss_dssp HHHHHHHHHHH-HHHHH-HTCCCCCCC-----------------C
T ss_pred HHHHHHHHHHH-HHHHH-cCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence 22222111111 11111 567889999999999999888776654
No 203
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.63 E-value=4.3e-17 Score=121.40 Aligned_cols=133 Identities=17% Similarity=0.048 Sum_probs=96.0
Q ss_pred HHHHHHhCCCCc--ccccCcceEEEEEEE-cCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHH
Q 029920 31 TIVLKINGEDTS--VISPTLGFNIKTVTY-QKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMEL 106 (185)
Q Consensus 31 tli~~l~~~~~~--~~~~t~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~ 106 (185)
+|+.+++.+.+. .+.||++.... ... .+..+.+||+ ++.++.++..+++++|++++|+|++++. ++..+..|+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l 108 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETGSGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFL 108 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSSSEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EEEcCCCeEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHH
Confidence 577777776664 56788885444 222 2237899999 8888889999999999999999999987 787777777
Q ss_pred HHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHH
Q 029920 107 DNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 107 ~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (185)
..+.. .++|+++|+||+|+.+....++...... .+.. . ++++++||++|.|++++|..+.
T Consensus 109 ~~~~~----~~~piilv~NK~DL~~~~~v~~~~~~~~--~~~~-~-~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 109 VLAEK----NELETVMVINKMDLYDEDDLRKVRELEE--IYSG-L-YPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHH--HHTT-T-SCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHH----CCCCEEEEEeHHHcCCchhHHHHHHHHH--HHhh-h-CcEEEEECCCCcCHHHHHHHhc
Confidence 65533 3799999999999965322111111111 1111 1 6799999999999999998764
No 204
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.63 E-value=7.7e-15 Score=120.60 Aligned_cols=114 Identities=19% Similarity=0.182 Sum_probs=80.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC--------CC---cccc------c----CcceEEEEEEE-------cCeEEEEE
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE--------DT---SVIS------P----TLGFNIKTVTY-------QKYTLNIW 65 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~--------~~---~~~~------~----t~~~~~~~~~~-------~~~~~~~~ 65 (185)
++..+|+|+|+.++|||||..+|... .. ..+. . |+......+.+ +++.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 45678999999999999999998411 11 0111 1 22222223444 35899999
Q ss_pred EcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 66 DVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 66 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
||||+-.|.......++-+|++++|+|+...-..+ ....|+....+ ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~q-T~~v~~~a~~~----~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQ-SETVWRQANKY----GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHH-HHHHHHHHHHH----TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchh-HHHHHHHHHHc----CCCeEEEEccccccCc
Confidence 99999999999999999999999999999754433 23334444443 7999999999998654
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=1.9e-14 Score=109.01 Aligned_cols=79 Identities=22% Similarity=0.227 Sum_probs=55.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEcC-----------------eEEEEEEcCCchhhH--
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQRTIR-- 74 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~-- 74 (185)
++|+++|.||+|||||+|+|++.... ....|.......+.+.+ ..+.+|||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 68999999999999999999986632 11123333323344433 579999999986543
Q ss_pred -----HHHHhhhcCCCEEEEEEeCCC
Q 029920 75 -----SYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 75 -----~~~~~~~~~~d~~i~v~d~~~ 95 (185)
.....+++.+|++++|+|+++
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCC
Confidence 223345789999999999986
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.59 E-value=3.9e-15 Score=108.27 Aligned_cols=112 Identities=21% Similarity=0.389 Sum_probs=89.5
Q ss_pred cCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHH---HHHhccc-cCCCeEEEEeec-CCCCCCCCHHHHHHh
Q 029920 67 VGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELD---NLLKEER-LSGASLLILANK-QDINGALTPTEIAKV 141 (185)
Q Consensus 67 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~---~~~~~~~-~~~~~~ivv~nK-~D~~~~~~~~~~~~~ 141 (185)
.+|+...+..|..|++++|++|||+|.+|.+.++ ....+. .++.... ..+.|++|++|| -|+.......++.+.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~ 272 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE 272 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence 4578999999999999999999999999987655 444333 4443322 358999999997 589888899999999
Q ss_pred cCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhhhc
Q 029920 142 LNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIASRI 181 (185)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 181 (185)
++.... . +.|.+..|||.+|+|+.+.++||.+.+..+.
T Consensus 273 L~L~~l-~-r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 273 LHLNLL-N-HPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp TTGGGG-C-SCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred cCCccC-C-CcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 988766 3 7899999999999999999999999987653
No 207
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.57 E-value=5.1e-15 Score=105.62 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=84.6
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhCCCCcc-cccCcc----------------eEEEEEEEc------------
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKINGEDTSV-ISPTLG----------------FNIKTVTYQ------------ 58 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~~~~~-~~~t~~----------------~~~~~~~~~------------ 58 (185)
+......+.++|+++|++|||||||+++|+...+.. ..++.+ .....+..+
T Consensus 30 r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (226)
T 2hf9_A 30 RKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGH 109 (226)
T ss_dssp HHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHH
T ss_pred HHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHH
Confidence 334345578999999999999999999998653321 111111 011111100
Q ss_pred --------CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC
Q 029920 59 --------KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN 130 (185)
Q Consensus 59 --------~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~ 130 (185)
+..+.++|++|.-... ..+-...+..+.++|......... .. ... .+.|.++|+||+|+.
T Consensus 110 ~~~~l~~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~------~~~~~iiv~NK~Dl~ 177 (226)
T 2hf9_A 110 ALEDLNLDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KH-PGI------MKTADLIVINKIDLA 177 (226)
T ss_dssp HHTTSCGGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH------HTTCSEEEEECGGGH
T ss_pred HHHHHhcCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hh-hhH------hhcCCEEEEeccccC
Confidence 0134555555521100 001112344455666432111100 00 000 146789999999985
Q ss_pred CC--CCHHHHHHhcCcccccCccceEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 131 GA--LTPTEIAKVLNLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 131 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
+. ....+....+... ....+++++||++|.|++++|+++.+.+.+
T Consensus 178 ~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 178 DAVGADIKKMENDAKRI----NPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHTCCHHHHHHHHHHH----CTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHh----CCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 42 2333333322210 135689999999999999999999887754
No 208
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.56 E-value=3.4e-14 Score=108.11 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc--c-cccCcceEEEEEEE---------------------cCeEEEEEEcCCchh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS--V-ISPTLGFNIKTVTY---------------------QKYTLNIWDVGGQRT 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~--~-~~~t~~~~~~~~~~---------------------~~~~~~~~D~~g~~~ 72 (185)
++|+++|.+|+|||||+|+|++.... . ...|...+...... ....+.+|||||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 68999999999999999999875321 1 11122222222222 245799999999754
Q ss_pred h-------HHHHHhhhcCCCEEEEEEeCCC
Q 029920 73 I-------RSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 73 ~-------~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
. ......+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 2 2344556789999999999985
No 209
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.55 E-value=4.1e-15 Score=112.25 Aligned_cols=154 Identities=16% Similarity=0.163 Sum_probs=88.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC------CCCccccc----C-------------------cceEEE----------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING------EDTSVISP----T-------------------LGFNIK---------- 53 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~------~~~~~~~~----t-------------------~~~~~~---------- 53 (185)
......++++|++|||||||++.+.+ ........ + ......
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G 131 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGG 131 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcccccccCcccccccc
Confidence 34567899999999999999999973 32211100 0 000000
Q ss_pred ----------EEEEcCeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEE
Q 029920 54 ----------TVTYQKYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLIL 123 (185)
Q Consensus 54 ----------~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv 123 (185)
.+...+..+.++||||...... .....+|.+++++|....+..+.....+ ...+.+++
T Consensus 132 ~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~i---------~~~~~ivv 199 (337)
T 2qm8_A 132 VAAKTRETMLLCEAAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKGI---------FELADMIA 199 (337)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTTH---------HHHCSEEE
T ss_pred hHHHHHHHHHHHhcCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHHH---------hccccEEE
Confidence 0122568999999999754322 2346899999999986433211111000 12356777
Q ss_pred eecCCCCCCCC-H----HHHHHhcCccccc-CccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 124 ANKQDINGALT-P----TEIAKVLNLEAMD-KTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 124 ~nK~D~~~~~~-~----~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
+||+|+..... . .++...+...... .....+++.+||+++.|++++++.|.+...
T Consensus 200 lNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 200 VNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred EEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 89999754211 1 1121111111000 001346888999999999999999988654
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.33 E-value=2.4e-12 Score=98.47 Aligned_cols=85 Identities=21% Similarity=0.212 Sum_probs=52.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc---ccccCcceEEEEEEEc-----------------CeEEEEEEcCCchh
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS---VISPTLGFNIKTVTYQ-----------------KYTLNIWDVGGQRT 72 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~---~~~~t~~~~~~~~~~~-----------------~~~~~~~D~~g~~~ 72 (185)
....++|+++|.+|+|||||+|+|++.... ....|.......+.+. ...+.+|||||...
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 455689999999999999999999987652 1122333334444432 23599999999765
Q ss_pred hHH-------HHHhhhcCCCEEEEEEeCCCcc
Q 029920 73 IRS-------YWRNYFEQTDGLVWVVDSSDLR 97 (185)
Q Consensus 73 ~~~-------~~~~~~~~~d~~i~v~d~~~~~ 97 (185)
... .+..+++.+|++++|+|+++..
T Consensus 99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp --------CCHHHHHHHTSSSEEEEEEC----
T ss_pred ccchhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 433 4567789999999999998643
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.28 E-value=2.7e-12 Score=95.53 Aligned_cols=95 Identities=18% Similarity=0.081 Sum_probs=69.2
Q ss_pred chhhHHHHHhhhcCCCEEEEEEeCCCcc-cHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcc
Q 029920 70 QRTIRSYWRNYFEQTDGLVWVVDSSDLR-RLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLE 145 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~ 145 (185)
++.+..+...++.++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+... ..+....+.
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~-- 139 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYR-- 139 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHH--
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHH--
Confidence 5555556667899999999999999986 88877777765433 4799999999999965421 111111111
Q ss_pred cccCccceEEEeecccCCCCHHHHHHHHH
Q 029920 146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLV 174 (185)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 174 (185)
. .+.+++++||++|.|++++++.+.
T Consensus 140 ---~-~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 140 ---D-AGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp ---H-TTCEEEECCTTTCTTHHHHHHHTT
T ss_pred ---H-CCCeEEEEECCCCCCHHHHHhhcc
Confidence 1 356899999999999999998754
No 212
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.25 E-value=3e-13 Score=103.28 Aligned_cols=121 Identities=12% Similarity=0.099 Sum_probs=72.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC-----CCcccccCcceEEEE--EEEcCeEEEEEEcCCchhhH--------HHHHh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE-----DTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQRTIR--------SYWRN 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~-----~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~~~--------~~~~~ 79 (185)
...+++++|.+|+|||||+|+|.+. .....++..+++... +... ..+.++||||..... .....
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~-~~~~liDtPG~~~~~~~~~~l~~~~l~~ 239 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLE-SGATLYDTPGIINHHQMAHFVDARDLKI 239 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeC-CCeEEEeCCCcCcHHHHHHHHhHHHHHH
Confidence 3468999999999999999999876 333333333333322 2222 247999999953221 11122
Q ss_pred hh--cCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHh
Q 029920 80 YF--EQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKV 141 (185)
Q Consensus 80 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~ 141 (185)
++ ...+.++++++....--+... ..+......+.|+++++||.|.......+...+.
T Consensus 240 ~~~~~~i~~~~~~l~~~~~~~~g~l-----~~l~~l~~~~~~~~~v~~k~d~~~~~~~~~~~~~ 298 (369)
T 3ec1_A 240 ITPKREIHPRVYQLNEGQTLFFGGL-----ARLDYIKGGRRSFVCYMANELTVHRTKLEKADSL 298 (369)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETTT-----EEEEEEESSSEEEEEEECTTSCEEEEEGGGHHHH
T ss_pred HhcccccCceEEEEcCCceEEECCE-----EEEEEccCCCceEEEEecCCcccccccHHHHHHH
Confidence 22 678999999988432111110 0022333446899999999998655444444433
No 213
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.24 E-value=1.9e-11 Score=96.46 Aligned_cols=155 Identities=20% Similarity=0.173 Sum_probs=87.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHh------CCCCccccc-----C-----------cceEEEE-----------------
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKIN------GEDTSVISP-----T-----------LGFNIKT----------------- 54 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~------~~~~~~~~~-----t-----------~~~~~~~----------------- 54 (185)
.+...|+++|.+||||||+++.|. +.+...... . .+.....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345689999999999999999998 554321111 0 0011111
Q ss_pred EEEcCeEEEEEEcCCchhh----HHHHHhh--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeE-EEEeecC
Q 029920 55 VTYQKYTLNIWDVGGQRTI----RSYWRNY--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASL-LILANKQ 127 (185)
Q Consensus 55 ~~~~~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~ 127 (185)
....++.+.++||||.... ....... .-.+|.+++|+|+......... ...+ .. ..|+ .+|+||+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~---a~~~-~~----~~~i~gvVlNK~ 250 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQ---AKAF-KD----KVDVASVIVTKL 250 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHH---HHHH-HH----HHCCCCEEEECT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHH---HHHH-Hh----hcCceEEEEeCC
Confidence 0115678999999996532 1111111 2278999999999875432221 1222 11 1564 8999999
Q ss_pred CCCCCCCH-HHHHHhcCcc--------cccC-ccceEEEeecccCCCC-HHHHHHHHHHH
Q 029920 128 DINGALTP-TEIAKVLNLE--------AMDK-TRHWKIVGCSAYTGEG-LLEGFDWLVQD 176 (185)
Q Consensus 128 D~~~~~~~-~~~~~~~~~~--------~~~~-~~~~~~~~~Sa~~~~~-i~~l~~~l~~~ 176 (185)
|....... ..+...++.. .... ....+.+.+|+..|.| ++++++++.+.
T Consensus 251 D~~~~~g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 251 DGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp TSCCCCTHHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccccchHHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 98754332 1222222210 0000 0111235589999999 99999988765
No 214
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.14 E-value=1.6e-11 Score=93.74 Aligned_cols=123 Identities=10% Similarity=0.054 Sum_probs=71.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCC------CcccccCcceEEEEEEEc-CeEEEEEEcCCchhhH--------HHHHh
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGED------TSVISPTLGFNIKTVTYQ-KYTLNIWDVGGQRTIR--------SYWRN 79 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~------~~~~~~t~~~~~~~~~~~-~~~~~~~D~~g~~~~~--------~~~~~ 79 (185)
...+++++|.+|+|||||+|+|.+.. ....+...+++.....+. ...+.++||||..... .....
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~ 238 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKL 238 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHH
Confidence 34689999999999999999998753 222334444433332221 1238999999953322 11122
Q ss_pred h--hcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920 80 Y--FEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142 (185)
Q Consensus 80 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~ 142 (185)
+ ....+.+++++|....--... ...+......+.|+++++||.|.......+...+.+
T Consensus 239 ~~~~~~i~~~~~~l~~~~~~~~g~-----l~~~d~l~~~~~~~~~v~nk~d~~~~~~~~~~~~~~ 298 (368)
T 3h2y_A 239 ITPTKEIKPMVFQLNEEQTLFFSG-----LARFDYVSGGRRAFTCHFSNRLTIHRTKLEKADELY 298 (368)
T ss_dssp HSCSSCCCCEEEEECTTEEEEETT-----TEEEEEEESSSEEEEEEECTTSCEEEEEHHHHHHHH
T ss_pred hccccccCceEEEEcCCCEEEEcc-----eEEEEEecCCCceEEEEecCccccccccHHHHHHHH
Confidence 2 256788999998742111111 001222333468999999999987665555544443
No 215
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.10 E-value=3.2e-10 Score=86.89 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=59.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc----cccCcceEEEEEEEcC-----------------eEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV----ISPTLGFNIKTVTYQK-----------------YTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~~~D~~g~~ 71 (185)
.....+++++|++|+|||||+|+|++..... ...|.......+.+.+ ..+.++|+||..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~ 96 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT 96 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccc
Confidence 3446799999999999999999999865421 1224444444455543 468999999943
Q ss_pred -------hhHHHHHhhhcCCCEEEEEEeCCC
Q 029920 72 -------TIRSYWRNYFEQTDGLVWVVDSSD 95 (185)
Q Consensus 72 -------~~~~~~~~~~~~~d~~i~v~d~~~ 95 (185)
.+......+++.+|++++|+|+.+
T Consensus 97 ~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 97 KGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 234455667789999999999874
No 216
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=3.2e-10 Score=87.48 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=70.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCcc--cc-cCcceEEEEE--EE--cC--eEEEEEEcCCchhh----------
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTSV--IS-PTLGFNIKTV--TY--QK--YTLNIWDVGGQRTI---------- 73 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~~--~~-~t~~~~~~~~--~~--~~--~~~~~~D~~g~~~~---------- 73 (185)
+...++++|+|++|+|||||++.|+|..+.. .. ...+.....+ .. .+ ..+.++|++|....
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i 118 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI 118 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence 4445679999999999999999999875421 11 1112122211 11 22 36889999984321
Q ss_pred ----HHHHHhhh-------------cC--CCE-EEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC
Q 029920 74 ----RSYWRNYF-------------EQ--TDG-LVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL 133 (185)
Q Consensus 74 ----~~~~~~~~-------------~~--~d~-~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 133 (185)
...+..++ .. .|+ +.++.|...+-+... ..+...+. .+.|+|+|+||+|.....
T Consensus 119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D--ieilk~L~----~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD--LVTMKKLD----SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH--HHHHHHTC----SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH--HHHHHHHh----hCCCEEEEEcchhccchH
Confidence 11111111 11 233 445666654322222 22223222 478999999999986553
Q ss_pred CHHHHHHhcCcccccCccceEEEeecc
Q 029920 134 TPTEIAKVLNLEAMDKTRHWKIVGCSA 160 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (185)
+...+...+... +.. .+++++.+|.
T Consensus 193 E~~~l~~~I~~~-L~~-~gi~I~~is~ 217 (427)
T 2qag_B 193 ELTKFKIKITSE-LVS-NGVQIYQFPT 217 (427)
T ss_dssp HHHHHHHHHHHH-HBT-TBCCCCCCC-
T ss_pred HHHHHHHHHHHH-HHH-cCCcEEecCC
Confidence 433333332211 111 4555555553
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.02 E-value=3.5e-09 Score=81.67 Aligned_cols=159 Identities=12% Similarity=0.193 Sum_probs=86.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCCCccccc-Cc---ceE--EEEEEEcC-eEEEEEEcCCchhh----HHH-HHhhhc
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGEDTSVISP-TL---GFN--IKTVTYQK-YTLNIWDVGGQRTI----RSY-WRNYFE 82 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~-t~---~~~--~~~~~~~~-~~~~~~D~~g~~~~----~~~-~~~~~~ 82 (185)
....++++|++|||||||+|.+.|...+.... +. ..+ ........ ..+.++|++|.... ... ....+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 44589999999999999999999854321110 00 000 01112222 25789999985321 111 111234
Q ss_pred CCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCC---------CCCCHHHHHHhcCcccc---cC-
Q 029920 83 QTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDIN---------GALTPTEIAKVLNLEAM---DK- 149 (185)
Q Consensus 83 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~---------~~~~~~~~~~~~~~~~~---~~- 149 (185)
..+..++ ++..... ..+..+...+.. .+.|+++|.||.|+. +.....++.+.+..... ..
T Consensus 148 ~~~~~~~-lS~G~~~---kqrv~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~ 220 (413)
T 1tq4_A 148 EYDFFII-ISATRFK---KNDIDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN 220 (413)
T ss_dssp GCSEEEE-EESSCCC---HHHHHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEE-eCCCCcc---HHHHHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 4465555 6665211 111112222222 268999999999853 22333433333322110 00
Q ss_pred -ccceEEEeecc--cCCCCHHHHHHHHHHHHhhh
Q 029920 150 -TRHWKIVGCSA--YTGEGLLEGFDWLVQDIASR 180 (185)
Q Consensus 150 -~~~~~~~~~Sa--~~~~~i~~l~~~l~~~~~~~ 180 (185)
.....++.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 12235788999 56667999999999887654
No 218
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.02 E-value=3.2e-10 Score=83.46 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=68.8
Q ss_pred EEEcCCch-hhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhc
Q 029920 64 IWDVGGQR-TIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVL 142 (185)
Q Consensus 64 ~~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~ 142 (185)
+-..||+. .........++.+|+++.|+|+.+|.+... ..+..++ .++|.++|+||+|+.+....+.+.+.+
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~--~~l~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~ 75 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAVTQQWKEHF 75 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCC--HHHHHHH-----CCCCEEEEEECcccCCHHHHHHHHHHH
Confidence 44678875 455666778899999999999999876542 1223332 379999999999997642222333333
Q ss_pred CcccccCccceEEEeecccCCCCHHHHHHHHHHHHh
Q 029920 143 NLEAMDKTRHWKIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.. .+.+++.+||+++.|++++++.+.+.+.
T Consensus 76 ~~------~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 76 EN------QGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HT------TTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred Hh------cCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 11 3457899999999999999998887765
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.01 E-value=4.3e-10 Score=85.82 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=67.7
Q ss_pred CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCC-CHHHHHHhcCcccc
Q 029920 69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGAL-TPTEIAKVLNLEAM 147 (185)
Q Consensus 69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-~~~~~~~~~~~~~~ 147 (185)
..++|......+.+.+|++++|+|++++. ..|...+.+. ..++|+++|+||+|+.+.. ..++..+.+.. ..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~--~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~-~~ 126 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRF--VGNNKVLLVGNKADLIPKSVKHDKVKHWMRY-SA 126 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHH--SSSSCEEEEEECGGGSCTTSCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHH--hCCCcEEEEEEChhcCCcccCHHHHHHHHHH-HH
Confidence 46788889999999999999999999853 1222222221 1378999999999986543 22222222111 01
Q ss_pred cCccce---EEEeecccCCCCHHHHHHHHHHHHh
Q 029920 148 DKTRHW---KIVGCSAYTGEGLLEGFDWLVQDIA 178 (185)
Q Consensus 148 ~~~~~~---~~~~~Sa~~~~~i~~l~~~l~~~~~ 178 (185)
.. .+. +++.+||++|.|++++++.+.+...
T Consensus 127 ~~-~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 127 KQ-LGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HH-TTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HH-cCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 11 223 7899999999999999999977653
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.95 E-value=7e-10 Score=84.68 Aligned_cols=102 Identities=15% Similarity=0.117 Sum_probs=68.3
Q ss_pred CchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC-HHHHHHhcCcccc
Q 029920 69 GQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT-PTEIAKVLNLEAM 147 (185)
Q Consensus 69 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~-~~~~~~~~~~~~~ 147 (185)
.+++|+.....+.+.++++++|+|++++.+ .....+..++ .+.|+++|+||+|+.+... .+...+.+.. .+
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~--s~~~~l~~~l-----~~~piilV~NK~DLl~~~~~~~~~~~~l~~-~~ 128 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG--SFIPGLPRFA-----ADNPILLVGNKADLLPRSVKYPKLLRWMRR-MA 128 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG--GCCSSHHHHC-----TTSCEEEEEECGGGSCTTCCHHHHHHHHHH-HH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC--chhhHHHHHh-----CCCCEEEEEEChhcCCCccCHHHHHHHHHH-HH
Confidence 478899999988899999999999998653 1111122221 2689999999999865432 2233222111 01
Q ss_pred cCccc---eEEEeecccCCCCHHHHHHHHHHHHhh
Q 029920 148 DKTRH---WKIVGCSAYTGEGLLEGFDWLVQDIAS 179 (185)
Q Consensus 148 ~~~~~---~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 179 (185)
.. .+ .+++.+||++|.|++++++.+.+....
T Consensus 129 ~~-~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 129 EE-LGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp HT-TTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HH-cCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 11 22 368999999999999999999876543
No 221
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.91 E-value=9.9e-10 Score=80.37 Aligned_cols=113 Identities=16% Similarity=0.184 Sum_probs=60.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCcccc----------cCcceEEEEE--EEcC--eEEEEEEcCCchh---------
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTSVIS----------PTLGFNIKTV--TYQK--YTLNIWDVGGQRT--------- 72 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~~~~----------~t~~~~~~~~--~~~~--~~~~~~D~~g~~~--------- 72 (185)
.++++++|++|+|||||++.|++...+..+ .+.......+ ...+ ..+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 479999999999999999999875432211 1111011111 1111 3678999998321
Q ss_pred -hHH----HHHh--------------hhcCCCEEEEEEeCCC-cccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCC
Q 029920 73 -IRS----YWRN--------------YFEQTDGLVWVVDSSD-LRRLDDCKMELDNLLKEERLSGASLLILANKQDINGA 132 (185)
Q Consensus 73 -~~~----~~~~--------------~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~ 132 (185)
... .... .+..++++++++|-.. +-+ .....+...+.. ..++|+|++|+|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~--~lD~~~l~~L~~----~~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLR--PLDLEFMKHLSK----VVNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCC--HHHHHHHHHHHT----TSEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCC--HHHHHHHHHHHh----cCcEEEEEeccccCCH
Confidence 000 0111 1123588899998552 222 111112222222 2899999999998664
Q ss_pred CC
Q 029920 133 LT 134 (185)
Q Consensus 133 ~~ 134 (185)
.+
T Consensus 156 ~e 157 (270)
T 3sop_A 156 EE 157 (270)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.81 E-value=3e-09 Score=78.28 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=37.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCch
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQR 71 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~ 71 (185)
...++++++|.||+|||||+|+|.+......++..+.+... +.. +..+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKV-GKELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEEE-TTTEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEe-CCCEEEEECcCcC
Confidence 46789999999999999999999998765555554443322 222 3368999999954
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.76 E-value=1.7e-09 Score=78.78 Aligned_cols=55 Identities=29% Similarity=0.484 Sum_probs=35.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEE--EEEcCeEEEEEEcCCchh
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKT--VTYQKYTLNIWDVGGQRT 72 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~D~~g~~~ 72 (185)
++++++|.+|+|||||+|+|.+.......++.+.+... +.. +..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~-~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWFSL-ENGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEEEC-TTSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEEEe-CCCEEEEECCCccc
Confidence 69999999999999999999988775555555433221 222 34789999999654
No 224
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.74 E-value=3.9e-09 Score=82.01 Aligned_cols=108 Identities=21% Similarity=0.293 Sum_probs=61.9
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC------CCcccc----------------------------cCcc---eEEEEE-EE
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE------DTSVIS----------------------------PTLG---FNIKTV-TY 57 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~------~~~~~~----------------------------~t~~---~~~~~~-~~ 57 (185)
+..|+++|++|+||||+++.|... +..... .+.. .....+ ..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 457999999999999999988541 110000 0000 000000 01
Q ss_pred cCeEEEEEEcCCchhhHHH----HHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCC-e-EEEEeecCCC
Q 029920 58 QKYTLNIWDVGGQRTIRSY----WRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGA-S-LLILANKQDI 129 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~~----~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~-~-~ivv~nK~D~ 129 (185)
.++.+.++||||....... ... .+..+|.+++|+|+..... .......+ . ... | ..+|+||+|.
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~-~----~~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF-K----EAVGEIGSIIVTKLDG 250 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH-H----TTSCSCEEEEEECSSS
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH-h----hcccCCeEEEEeCCCC
Confidence 4578999999996543211 111 1236899999999876432 11111221 1 134 5 8899999998
Q ss_pred CC
Q 029920 130 NG 131 (185)
Q Consensus 130 ~~ 131 (185)
..
T Consensus 251 ~~ 252 (432)
T 2v3c_C 251 SA 252 (432)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 225
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.70 E-value=6e-08 Score=75.26 Aligned_cols=111 Identities=20% Similarity=0.194 Sum_probs=63.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHh------CCCCcc-----cc-----------cCcceEEEEE-----------------
Q 029920 15 KEMRILMVGLDNSGKTTIVLKIN------GEDTSV-----IS-----------PTLGFNIKTV----------------- 55 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~------~~~~~~-----~~-----------~t~~~~~~~~----------------- 55 (185)
++..|+++|++|+||||++..|. +.+... .. ...+......
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 35679999999999999998885 222210 00 0111111110
Q ss_pred EEcCeEEEEEEcCCchhhH----HHHH--hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCC
Q 029920 56 TYQKYTLNIWDVGGQRTIR----SYWR--NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDI 129 (185)
Q Consensus 56 ~~~~~~~~~~D~~g~~~~~----~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~ 129 (185)
..+++.+.++||||..... .... .....+|.+++|+|+.....-.... ..+... -.+..+|+||.|.
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a---~~f~~~----~~i~gVIlTKlD~ 251 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQA---LAFKEA----TPIGSIIVTKLDG 251 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHH---HHHHHS----CTTEEEEEECCSS
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHH---HHHHhh----CCCeEEEEECCCC
Confidence 0134789999999943211 1111 1234579999999998654332222 222221 2456799999998
Q ss_pred CCC
Q 029920 130 NGA 132 (185)
Q Consensus 130 ~~~ 132 (185)
...
T Consensus 252 ~~~ 254 (443)
T 3dm5_A 252 SAK 254 (443)
T ss_dssp CSS
T ss_pred ccc
Confidence 653
No 226
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.64 E-value=3.8e-08 Score=79.72 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDTS 42 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~~ 42 (185)
...++|+|+.|||||||++.+.|...+
T Consensus 45 lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 45 LPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred CCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 356999999999999999999987533
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.63 E-value=4.9e-08 Score=78.41 Aligned_cols=59 Identities=17% Similarity=0.239 Sum_probs=40.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCCCCc-cccc-CcceEEEEEE-------EcCeEEEEEEcCCch
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGEDTS-VISP-TLGFNIKTVT-------YQKYTLNIWDVGGQR 71 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~~~~-~~~~-t~~~~~~~~~-------~~~~~~~~~D~~g~~ 71 (185)
..+.++|+|+|.||+|||||+|+|.+.... .... +.+.+..... ..+..+.++||||..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456788999999999999999999997642 2221 2122222221 245789999999954
No 228
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.48 E-value=1.6e-07 Score=72.82 Aligned_cols=109 Identities=20% Similarity=0.267 Sum_probs=62.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHh------CCCCcc-----cc-----------cCcceEEEEE-----------------E
Q 029920 16 EMRILMVGLDNSGKTTIVLKIN------GEDTSV-----IS-----------PTLGFNIKTV-----------------T 56 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~------~~~~~~-----~~-----------~t~~~~~~~~-----------------~ 56 (185)
+..|+++|++|+||||++..|. +.+... +. ...+...... .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 5678999999999999998885 222210 00 0111111100 0
Q ss_pred EcCeEEEEEEcCCchh------hHHHHHh--hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCC
Q 029920 57 YQKYTLNIWDVGGQRT------IRSYWRN--YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQD 128 (185)
Q Consensus 57 ~~~~~~~~~D~~g~~~------~~~~~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D 128 (185)
.++..+.++||||... ....... .....|.+++|+|+............+.. . -.+..+|+||.|
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~f~~---~----~~~~gVIlTKlD 249 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASRFHQ---A----SPIGSVIITKMD 249 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHHHHH---H----CSSEEEEEECGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHHHhc---c----cCCcEEEEeccc
Confidence 1256889999999532 1111111 12256999999999865433333322222 1 245789999999
Q ss_pred CCC
Q 029920 129 ING 131 (185)
Q Consensus 129 ~~~ 131 (185)
...
T Consensus 250 ~~a 252 (433)
T 3kl4_A 250 GTA 252 (433)
T ss_dssp GCS
T ss_pred ccc
Confidence 764
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.45 E-value=3.5e-08 Score=71.81 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=59.6
Q ss_pred cCCchh-hHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCCHHHHHHhcCcc
Q 029920 67 VGGQRT-IRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALTPTEIAKVLNLE 145 (185)
Q Consensus 67 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~ 145 (185)
.||+.. ........+..+|+++.|+|+.+|.+.... .+. ++ ++|.++|+||+|+.+....+.+...+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~l~-ll------~k~~iivlNK~DL~~~~~~~~~~~~~~~- 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--GVD-FS------RKETIILLNKVDIADEKTTKKWVEFFKK- 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--TSC-CT------TSEEEEEEECGGGSCHHHHHHHHHHHHH-
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--HHH-hc------CCCcEEEEECccCCCHHHHHHHHHHHHH-
Confidence 466543 234566678999999999999987655421 111 11 6999999999999764222233332321
Q ss_pred cccCccceEEEeecccCCCCHHHHHHHHHH
Q 029920 146 AMDKTRHWKIVGCSAYTGEGLLEGFDWLVQ 175 (185)
Q Consensus 146 ~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~ 175 (185)
.+.++ .+||+++.|++++++.+..
T Consensus 74 -----~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 -----QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp -----TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred -----cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 23456 9999999999998877643
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=2e-07 Score=69.26 Aligned_cols=85 Identities=14% Similarity=0.029 Sum_probs=56.3
Q ss_pred hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC----HHHHHHhcCcccccCccceE
Q 029920 79 NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT----PTEIAKVLNLEAMDKTRHWK 154 (185)
Q Consensus 79 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+.++|.+++|+|+.+|..-... +..++......++|.++|+||+|+.+... ...+...+.. .+.+
T Consensus 82 ~~~anvD~v~~V~~~~~p~~~~~~---i~r~L~~~~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~------~g~~ 152 (307)
T 1t9h_A 82 PPICNVDQAVLVFSAVQPSFSTAL---LDRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRN------IGYD 152 (307)
T ss_dssp TTEECCCEEEEEEESTTTTCCHHH---HHHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHH------HTCC
T ss_pred HHHHhCCEEEEEEeCCCCCCCHHH---HHHHHHHHHHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHh------CCCe
Confidence 357899999999999976533332 33333222234799999999999987532 2333333321 3457
Q ss_pred EEeecccCCCCHHHHHHH
Q 029920 155 IVGCSAYTGEGLLEGFDW 172 (185)
Q Consensus 155 ~~~~Sa~~~~~i~~l~~~ 172 (185)
++.+||.++.|++++++.
T Consensus 153 v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 153 VYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EEECCHHHHTTCTTTGGG
T ss_pred EEEEecCCCCCHHHHHhh
Confidence 899999999988876643
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.24 E-value=4.6e-06 Score=61.71 Aligned_cols=66 Identities=17% Similarity=0.125 Sum_probs=40.3
Q ss_pred cCeEEEEEEcCCchh--hHH-HHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecCC
Q 029920 58 QKYTLNIWDVGGQRT--IRS-YWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQD 128 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~D 128 (185)
+++.+.++||||... ... ... .....+|.+++|+|+..... .......+.. ..+ ..+|+||+|
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~-----~~~i~gvVlnk~D 250 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ-----ASKIGTIIITKMD 250 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH-----TCTTEEEEEECGG
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh-----hCCCCEEEEeCCC
Confidence 457899999999765 321 111 12447899999999875322 2222222211 245 778999999
Q ss_pred CCC
Q 029920 129 ING 131 (185)
Q Consensus 129 ~~~ 131 (185)
...
T Consensus 251 ~~~ 253 (297)
T 1j8m_F 251 GTA 253 (297)
T ss_dssp GCT
T ss_pred CCc
Confidence 754
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.10 E-value=1.4e-05 Score=62.29 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+-.-|+|+|++++|||||+|.|.+.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34556999999999999999999753
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.06 E-value=1.7e-06 Score=64.87 Aligned_cols=25 Identities=44% Similarity=0.687 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+.--++++|++||||||+++.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999864
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.04 E-value=6.7e-07 Score=70.37 Aligned_cols=83 Identities=25% Similarity=0.311 Sum_probs=49.0
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEE--E--EcCeEEEEEEcCCchh--hHHHH--------Hh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTV--T--YQKYTLNIWDVGGQRT--IRSYW--------RN 79 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~--~~~~~--------~~ 79 (185)
.....|+++|.+||||||+.++|.........++..+....+ . .......+||..|.+. .+..+ ..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999987542211111111110000 0 0113345788888733 23332 45
Q ss_pred hhcCCCEEEEEEeCCCc
Q 029920 80 YFEQTDGLVWVVDSSDL 96 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~ 96 (185)
++...++.++|+|.++.
T Consensus 117 ~l~~~~G~~vV~D~tn~ 133 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT 133 (469)
T ss_dssp HHHTTCCSEEEEESCCC
T ss_pred HHHhCCCCEEEEeCCCC
Confidence 56667888999999986
No 235
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.03 E-value=3.8e-06 Score=65.30 Aligned_cols=110 Identities=19% Similarity=0.241 Sum_probs=62.2
Q ss_pred ceeEEEEEcCCCCChHHHHHHHh-------CCCCc-----cccc-----------CcceEEE-----------------E
Q 029920 15 KEMRILMVGLDNSGKTTIVLKIN-------GEDTS-----VISP-----------TLGFNIK-----------------T 54 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~-------~~~~~-----~~~~-----------t~~~~~~-----------------~ 54 (185)
++..|+++|..|+||||++..|. +.+.. ...+ ..+.... .
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999988875 43331 0000 0001000 0
Q ss_pred EEEcCeEEEEEEcCCchhhH-HHHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCe-EEEEeecC
Q 029920 55 VTYQKYTLNIWDVGGQRTIR-SYWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGAS-LLILANKQ 127 (185)
Q Consensus 55 ~~~~~~~~~~~D~~g~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-~ivv~nK~ 127 (185)
....++.+.++||||..... .... .....++.+++|+|+........ ....+-. ..+ .-+|+||.
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~-----~l~i~gvVlnK~ 250 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE-----ALPLTGVVLTKV 250 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH-----HSCCCCEEEECT
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc-----cCCCeEEEEecC
Confidence 01145789999999964331 1111 12447899999999986433222 2222211 233 34799999
Q ss_pred CCCCC
Q 029920 128 DINGA 132 (185)
Q Consensus 128 D~~~~ 132 (185)
|....
T Consensus 251 D~~~~ 255 (433)
T 2xxa_A 251 DGDAR 255 (433)
T ss_dssp TSSSC
T ss_pred CCCcc
Confidence 97544
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.00 E-value=1.5e-05 Score=60.34 Aligned_cols=83 Identities=18% Similarity=0.081 Sum_probs=51.3
Q ss_pred hhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCCCCC---HHHHHHhcCcccccCccceEEE
Q 029920 80 YFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDINGALT---PTEIAKVLNLEAMDKTRHWKIV 156 (185)
Q Consensus 80 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
...++|.+++|... +|..-... +..++......++|.++|+||+|+.+... ..++...+. . .+.+++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~---i~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~-----~-~G~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNI---IDRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYR-----N-IGYRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHH---HHHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHH-----T-TTCCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHH---HHHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHH-----h-CCCcEE
Confidence 35789999987554 55432222 22332211223788999999999976532 112222221 1 455789
Q ss_pred eecccCCCCHHHHHHH
Q 029920 157 GCSAYTGEGLLEGFDW 172 (185)
Q Consensus 157 ~~Sa~~~~~i~~l~~~ 172 (185)
.+||.++.|++++...
T Consensus 197 ~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEA 212 (358)
T ss_dssp ECBTTTTBTHHHHHHH
T ss_pred EEecCCCcCHHHHHHh
Confidence 9999999999987754
No 237
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.80 E-value=5e-05 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...++++|++|||||||+++|.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 356899999999999999998764
No 238
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.77 E-value=1.2e-05 Score=55.00 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
+++++|++|||||||++.+.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 239
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.65 E-value=2.3e-05 Score=54.39 Aligned_cols=34 Identities=26% Similarity=0.450 Sum_probs=21.6
Q ss_pred HHHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 6 IIRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 6 ~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
++..+......-.|+++|++||||||+++.|.+.
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 3444444455567999999999999999998653
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.64 E-value=2.1e-05 Score=53.72 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999764
No 241
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.63 E-value=2.6e-05 Score=55.12 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
---++|+|++|||||||++.|.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999997753
No 242
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.62 E-value=2.3e-05 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-.++++|++|||||||++.|.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36899999999999999998763
No 243
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.62 E-value=3e-05 Score=53.26 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.++++|++||||||+++.|.+.
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 346899999999999999999886
No 244
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.59 E-value=4.4e-05 Score=52.93 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=22.9
Q ss_pred hccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 11 KKKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 11 ~~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.....+..|++.|++||||||+.+.|..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3355567899999999999999999864
No 245
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.57 E-value=3e-05 Score=53.83 Aligned_cols=22 Identities=18% Similarity=0.308 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-++++|++|||||||++.|.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5899999999999999999765
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.56 E-value=3.2e-05 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.++++|++|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57999999999999999987753
No 247
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.56 E-value=3.2e-05 Score=53.11 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=19.1
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
++++|++|||||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999999754
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.54 E-value=4.3e-05 Score=53.38 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....|+|+|++|||||||++.|.+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999998764
No 249
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.53 E-value=4.8e-05 Score=54.31 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999998644
No 250
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.52 E-value=4.5e-05 Score=51.66 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 029920 18 RILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~ 37 (185)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999754
No 251
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.00028 Score=52.54 Aligned_cols=34 Identities=15% Similarity=0.083 Sum_probs=27.2
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+...-.......+.+.|+||+|||++++.++.
T Consensus 34 ~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~ 67 (318)
T 3te6_A 34 LPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMD 67 (318)
T ss_dssp HHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3455555567778899999999999999998864
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.52 E-value=4e-05 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
-.++++|++|||||||++.|.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999998754
No 253
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.48 E-value=5.9e-05 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 254
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.46 E-value=7.5e-05 Score=53.54 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHh---CCCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKIN---GEDT 41 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~---~~~~ 41 (185)
++-.|+++|++||||||+++.|. +...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~ 55 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH 55 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 35689999999999999999998 6544
No 255
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.44 E-value=7.1e-05 Score=53.63 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988643
No 256
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.44 E-value=6e-05 Score=50.48 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
=.++++|+.|||||||++.+.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 368999999999999999988754
No 257
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.43 E-value=7.5e-05 Score=54.20 Aligned_cols=24 Identities=33% Similarity=0.380 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 258
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.43 E-value=7.9e-05 Score=51.90 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....|+++|++||||||+++.|.+.
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 44567999999999999999999875
No 259
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.42 E-value=6.2e-05 Score=50.75 Aligned_cols=23 Identities=30% Similarity=0.445 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999998764
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.42 E-value=8.8e-05 Score=53.01 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999988643
No 261
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.42 E-value=7.8e-05 Score=54.49 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999999988643
No 262
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.42 E-value=7.7e-05 Score=52.05 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+...|+++|+.|||||||++.|.+.
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999999999998764
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.42 E-value=8.3e-05 Score=52.33 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999998643
No 264
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.41 E-value=5.4e-05 Score=58.63 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=37.5
Q ss_pred cCeEEEEEEcCCchhhHH-HHH-----hhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEEEEeecCCCCC
Q 029920 58 QKYTLNIWDVGGQRTIRS-YWR-----NYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLLILANKQDING 131 (185)
Q Consensus 58 ~~~~~~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~ 131 (185)
+++.+.++||||...... ... ...-.+|.+++|+|+.... ........+... -...-+|+||.|...
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq---~av~~a~~f~~~----l~i~GVIlTKlD~~~ 251 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQ---EALSVARAFDEK----VGVTGLVLTKLDGDA 251 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH----TCCCEEEEESGGGCS
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchH---HHHHHHHHHHhc----CCceEEEEeCcCCcc
Confidence 356799999999543211 111 1123589999999987532 222222222211 122567889999754
No 265
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=6.3e-05 Score=52.58 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.--|+++|++||||||+++.|.+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999997654
No 266
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.41 E-value=8.4e-05 Score=51.55 Aligned_cols=26 Identities=12% Similarity=0.348 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
..--|+++|++|||||||++.|.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34468899999999999999997643
No 267
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.41 E-value=8.3e-05 Score=53.80 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999988643
No 268
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=8.9e-05 Score=56.14 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998654
No 269
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.40 E-value=0.0008 Score=46.46 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=45.8
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhcc-ccCCCeEEEEeecCCCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEE-RLSGASLLILANKQDING 131 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~ivv~nK~D~~~ 131 (185)
.+.+.++|+|+... ......+..+|.+++++..... + ......+..+.... ..++.++.+|+|++|...
T Consensus 75 ~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp TSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 47899999998653 3444556779999999987654 3 44444444433221 134578899999999643
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.40 E-value=8.6e-05 Score=54.01 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 478999999999999999988643
No 271
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.39 E-value=0.0001 Score=53.06 Aligned_cols=24 Identities=33% Similarity=0.277 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999988644
No 272
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.39 E-value=0.0001 Score=52.89 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 273
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.38 E-value=9.2e-05 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Confidence 578999999999999999988643
No 274
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.38 E-value=7.5e-05 Score=51.20 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.++++|++||||||+++.|.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 275
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.38 E-value=0.0001 Score=49.52 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCChHHHHHHH
Q 029920 17 MRILMVGLDNSGKTTIVLKI 36 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l 36 (185)
..|++.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999999999
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.38 E-value=0.00011 Score=52.33 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 578999999999999999998644
No 277
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.38 E-value=0.00013 Score=55.35 Aligned_cols=33 Identities=18% Similarity=0.400 Sum_probs=25.0
Q ss_pred HHHHHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 5 SIIRKIKKKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 5 ~~~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+.+.....+. .++|+|++||||||+++.+.+
T Consensus 113 ~~l~~l~~~~~g-~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 113 EVFKRVSDVPRG-LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHHHHHCSSE-EEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-EEEEECCCCCCHHHHHHHHHh
Confidence 344554434444 799999999999999999865
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.37 E-value=9.8e-05 Score=52.87 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 578999999999999999998643
No 279
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.37 E-value=0.00011 Score=49.66 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..|++.|++||||||+++.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 280
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=0.0001 Score=53.30 Aligned_cols=24 Identities=25% Similarity=0.239 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 578999999999999999988643
No 281
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.35 E-value=0.0001 Score=51.10 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
...|+++|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999997754
No 282
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.35 E-value=0.00012 Score=53.09 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.++++|+.|||||||++.+.+-.
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58999999999999999998864
No 283
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.34 E-value=0.00012 Score=52.69 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998744
No 284
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.34 E-value=0.00012 Score=53.63 Aligned_cols=24 Identities=29% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999988643
No 285
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.34 E-value=0.00011 Score=52.94 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|+.|||||||++.+.|-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 286
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.34 E-value=8.4e-05 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.34 E-value=0.00012 Score=49.11 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.|++.|++||||||+++.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998643
No 288
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.34 E-value=0.00011 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..-|+++|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999998654
No 289
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.33 E-value=0.00013 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|+++|++||||||+.+.|..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998854
No 290
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.33 E-value=0.00013 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 579999999999999999988644
No 291
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.33 E-value=0.00015 Score=50.20 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=22.3
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
....-.|+++|++||||||+++.|.+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344567999999999999999988654
No 292
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.32 E-value=0.00014 Score=50.46 Aligned_cols=22 Identities=32% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999987
No 293
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.32 E-value=0.00013 Score=53.05 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|+.|||||||++.+.|-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999986
No 294
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=8.9e-05 Score=51.13 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998763
No 295
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.31 E-value=0.00017 Score=53.41 Aligned_cols=26 Identities=27% Similarity=0.276 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCCc
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDTS 42 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~~ 42 (185)
-.++++|++|||||||+|.|.+...+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccc
Confidence 36799999999999999999986553
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.31 E-value=0.00013 Score=50.19 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=18.9
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
|+|+||+|||||||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998654
No 297
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.30 E-value=0.00011 Score=54.47 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.=.++|+|++|||||||++.|.+-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 346899999999999999998753
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.30 E-value=0.00013 Score=52.68 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 299
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.30 E-value=0.00013 Score=52.99 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 578999999999999999988643
No 300
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.30 E-value=0.00014 Score=49.10 Aligned_cols=23 Identities=17% Similarity=0.426 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.-.|+++|++||||||+++.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35689999999999999998864
No 301
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.28 E-value=0.00016 Score=50.67 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999843
No 302
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.28 E-value=0.00012 Score=51.50 Aligned_cols=23 Identities=22% Similarity=0.250 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|+++|++||||||+++.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999865
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.28 E-value=0.00012 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.=.++|+|+.|||||||++.+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHh
Confidence 336899999999999999998763
No 304
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.27 E-value=0.00022 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.++.+|++.|++||||||+++.|..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999864
No 305
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.27 E-value=0.00013 Score=50.61 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 306
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00016 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999875
No 307
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.27 E-value=0.0002 Score=49.08 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|++||||||+++.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999864
No 308
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.26 E-value=0.00016 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34799999999999999999864
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.00017 Score=50.55 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
++|++.|++||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999853
No 310
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.26 E-value=0.00015 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.510 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999998644
No 311
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00051 Score=53.37 Aligned_cols=27 Identities=19% Similarity=0.304 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+--|++.||||||||+|++++++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 345567999999999999999999864
No 312
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.26 E-value=0.0002 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999863
No 313
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.26 E-value=5.1e-05 Score=56.29 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-.++++|++|+|||||+|.|.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC---
T ss_pred CEEEEECCCCCCHHHHHHHhccccc
Confidence 4789999999999999999988644
No 314
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.25 E-value=0.00011 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988754
No 315
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.25 E-value=9.2e-05 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=15.4
Q ss_pred eEEEEEcCCCCChHHHHHHHh-CC
Q 029920 17 MRILMVGLDNSGKTTIVLKIN-GE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~-~~ 39 (185)
-.++++|++|||||||++.|. +.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 358999999999999999999 65
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.25 E-value=0.00016 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..|++.|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999875
No 317
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.24 E-value=0.00018 Score=50.86 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=20.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|++.|++||||||+++.|..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999863
No 318
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.24 E-value=0.00022 Score=48.78 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+...|+++|++||||||+.+.|...
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34567999999999999999998764
No 319
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.23 E-value=0.00017 Score=53.69 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
......|+|+|++|||||||++.|.+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 355678999999999999999998764
No 320
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.22 E-value=0.00017 Score=50.72 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
....|+++|++||||||+++.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998854
No 321
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.22 E-value=0.00014 Score=51.22 Aligned_cols=21 Identities=24% Similarity=0.167 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++++|++|||||||++.+++
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.22 E-value=0.0002 Score=50.02 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+|+++|+|||||+|....|+.
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999864
No 323
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.22 E-value=0.0002 Score=49.00 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|++||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 324
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.21 E-value=0.0002 Score=49.44 Aligned_cols=21 Identities=33% Similarity=0.518 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999865
No 325
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.21 E-value=0.00018 Score=54.40 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999988644
No 326
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.00065 Score=52.52 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+--|++.||||+|||+|++++++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHH
Confidence 345567999999999999999999864
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.20 E-value=0.00022 Score=48.72 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..|++.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999854
No 328
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.19 E-value=0.00022 Score=52.52 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999988644
No 329
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.19 E-value=0.00019 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHCCCC
Confidence 478999999999999999988643
No 330
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.0002 Score=49.61 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...|+++|++||||||+++.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998643
No 331
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.19 E-value=0.00023 Score=48.48 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|+++|++||||||+.+.|..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999854
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.19 E-value=0.00021 Score=53.39 Aligned_cols=26 Identities=19% Similarity=0.139 Sum_probs=22.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...++-|++.|++|||||||++.|.+
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999988854
No 333
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.18 E-value=0.00013 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEEEECCCCchHHHHHHHHHcCCC
Confidence 689999999999999999987543
No 334
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.18 E-value=0.0002 Score=54.68 Aligned_cols=24 Identities=33% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHHcCCC
Confidence 478999999999999999988654
No 335
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.18 E-value=0.0002 Score=51.12 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 029920 18 RILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~ 37 (185)
-++++|++|||||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999876
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.18 E-value=0.00025 Score=48.68 Aligned_cols=24 Identities=42% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|++.|++||||||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998864
No 337
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.0002 Score=54.32 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCchHHHHHHHHhcCCC
Confidence 478999999999999999988644
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.18 E-value=0.00021 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.298 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.....|++.|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999876
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.17 E-value=0.00025 Score=48.52 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 340
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.17 E-value=0.0004 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.421 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.-.++++|++|+|||||+|.|. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3468999999999999999998 543
No 341
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.17 E-value=0.00024 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+|++.|++||||||+++.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998854
No 342
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.17 E-value=0.00017 Score=52.68 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|||||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 3999999999999999999874
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.16 E-value=0.00029 Score=48.74 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
......|++.|++||||||+.+.|..
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 44556899999999999999998863
No 344
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.16 E-value=0.0005 Score=53.28 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=22.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+--|++.||||||||+|++++++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 344556999999999999999999864
No 345
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.16 E-value=0.00024 Score=52.36 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=22.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+...|+|.|++|||||||++.|.+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 45678899999999999999988754
No 346
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.15 E-value=0.00028 Score=48.99 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 347
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.15 E-value=0.00023 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCcHHHHHHHHHHcCCC
Confidence 478999999999999999998644
No 348
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.00043 Score=53.75 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=23.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+-.|++.||||||||+|++++++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHH
Confidence 345567999999999999999999864
No 349
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.14 E-value=0.0003 Score=48.53 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..++..|+|.|++||||||+.+.|...
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 345678999999999999999999765
No 350
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.14 E-value=0.00023 Score=54.22 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHHcCCC
Confidence 478999999999999999988644
No 351
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.14 E-value=0.00028 Score=51.84 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=21.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.....-|++.|++||||||+++.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34456799999999999999999864
No 352
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.14 E-value=0.0022 Score=47.35 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=43.6
Q ss_pred CeEEEEEEcCCchhhHHHHHhhhcCCCEEEEEEeCCCcccHHHHHHHHHHHHhccccCCCeEE-EEeecCCC
Q 029920 59 KYTLNIWDVGGQRTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLSGASLL-ILANKQDI 129 (185)
Q Consensus 59 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~i-vv~nK~D~ 129 (185)
.+.+.++|+|+...... ....+..+|.+++|.... ..+...+...+..+.......+.+++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~~-~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCGG-FAAPLQHADQAVVVTAND-FDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCGG-GGGGGGTCSEEEEEECSS-HHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchHH-HHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 46899999987543221 123467899999999764 34555555544444332223456655 99999984
No 353
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.14 E-value=9.1e-05 Score=50.25 Aligned_cols=52 Identities=21% Similarity=0.246 Sum_probs=26.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCCcccccCcceEEEEEEEcCeEEEEEEcCCchhhH
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTVTYQKYTLNIWDVGGQRTIR 74 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~ 74 (185)
.++|+|++|||||||++.|.+...+. +.....+..++..+.-+|.++...++
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~-----g~~~G~I~~dg~~i~~~~~~~~d~~r 55 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRER-----GLRVAVVKRHAHGDFEIDKEGKDSWK 55 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHT-----TCCEEEEEC------------CHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhc-----CCceEEEEEcCcccccCCccchhHHH
Confidence 68999999999999999988652211 11233445555443334444554444
No 354
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.13 E-value=0.00024 Score=53.88 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEcCCCchHHHHHHHHhcCCC
Confidence 478999999999999999988644
No 355
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.12 E-value=0.00032 Score=48.46 Aligned_cols=24 Identities=42% Similarity=0.526 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...|++.|++||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999765
No 356
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.11 E-value=0.00017 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=22.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.-+++|+|++|||||||++.|.+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987644
No 357
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.10 E-value=0.00018 Score=47.55 Aligned_cols=24 Identities=17% Similarity=0.249 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.++++|++|+|||||++.+.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 346889999999999999998764
No 358
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.0018 Score=48.99 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-.+++.|++|+||||+++.+...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 44567999999999999999988753
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.10 E-value=0.00037 Score=47.60 Aligned_cols=26 Identities=38% Similarity=0.578 Sum_probs=21.8
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
......|+++|.+||||||+++.|..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 34556799999999999999998864
No 360
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.10 E-value=0.00031 Score=49.29 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|+++|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998854
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.10 E-value=0.00026 Score=47.88 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
+|+++|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999864
No 362
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.09 E-value=0.00035 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|++.|.+||||||+++.|..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999864
No 363
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.07 E-value=0.00036 Score=48.51 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|.+||||||+++.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999999864
No 364
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.06 E-value=0.00033 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.1
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
......|+++|++||||||+++.|.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34557899999999999999998865
No 365
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.06 E-value=0.0019 Score=42.14 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=22.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....|.+.|++|+|||++++.+...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh
Confidence 34567999999999999999988765
No 366
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.0003 Score=53.88 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5799999999999999999875
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.06 E-value=0.00024 Score=51.21 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...+..|+++|++||||||+.+.|..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44457899999999999999999854
No 368
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.06 E-value=0.00032 Score=52.07 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+...|+|+|++|||||||++.|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45578999999999999999998764
No 369
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.05 E-value=0.00018 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCccHHHHHHHHHcCCC
Confidence 478999999999999999988644
No 370
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.05 E-value=0.0004 Score=49.99 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 029920 16 EMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~ 37 (185)
...|+++|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 371
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.05 E-value=0.00067 Score=45.92 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.3
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-.+++.|++|+|||++++.+...
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHH
Confidence 44456899999999999999887653
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.05 E-value=0.00026 Score=50.86 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|+|||||++.+.+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999864
No 373
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.04 E-value=0.00036 Score=47.34 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|++||||||+++.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45689999999999999999863
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00041 Score=49.22 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=21.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
......|++.|.+||||||+++.|..
T Consensus 13 ~~~~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 13 SPKGVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44557899999999999999998864
No 375
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.04 E-value=0.00038 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.268 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|++||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999864
No 376
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.03 E-value=0.00042 Score=46.84 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...++++|++|||||||+.+|..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999865
No 377
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.03 E-value=0.0004 Score=46.46 Aligned_cols=21 Identities=33% Similarity=0.520 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
+|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 378
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.00043 Score=53.12 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=22.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+-.|++.||||+|||+|++++++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHh
Confidence 344567999999999999999999764
No 379
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.03 E-value=0.00032 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|++|||||||++.+.+...
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999987643
No 380
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.03 E-value=0.00028 Score=47.92 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=16.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+...|++.|.+||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999863
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.02 E-value=0.00047 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=20.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|.+||||||+.+.|..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.01 E-value=0.0004 Score=48.96 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|++||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998854
No 383
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.01 E-value=0.00069 Score=47.77 Aligned_cols=31 Identities=16% Similarity=0.220 Sum_probs=23.8
Q ss_pred HHhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 8 RKIKKKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 8 ~~~~~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.........-.+++.|++|+|||++++.+..
T Consensus 44 ~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 44 KSAASGDGVQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp HHHHHTCSCSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 3333333567899999999999999998864
No 384
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.01 E-value=0.00029 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.-.++++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999863
No 385
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.01 E-value=0.00035 Score=53.04 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-.++|+|+.|||||||++.+.+...
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999987643
No 386
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.00 E-value=0.00046 Score=49.90 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|+++|.+||||||+++.|..
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.98 E-value=0.00085 Score=46.79 Aligned_cols=30 Identities=23% Similarity=0.513 Sum_probs=23.5
Q ss_pred HhhccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 9 KIKKKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 9 ~~~~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
..........|+++|.+||||||+++.|..
T Consensus 18 ~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 18 TELRNQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp HHHHTSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred hcccCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 333345556789999999999999998865
No 388
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.98 E-value=0.0004 Score=50.05 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999864
No 389
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.97 E-value=0.00018 Score=54.42 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|-..
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 390
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.97 E-value=0.00049 Score=47.04 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999865
No 391
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.96 E-value=0.00052 Score=49.30 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=21.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+++.|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 44567899999999999999998854
No 392
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.95 E-value=0.01 Score=44.18 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.+++.|+||+|||+|++++...
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHHH
Confidence 357999999999999999998764
No 393
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00036 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999854
No 394
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.94 E-value=0.00054 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998653
No 395
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.94 E-value=0.00059 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
++.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 396
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.94 E-value=0.00036 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-.++++|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998764
No 397
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.93 E-value=0.0004 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
=.++|+|++||||||+++.+.+.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999998763
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.92 E-value=0.00059 Score=49.94 Aligned_cols=24 Identities=17% Similarity=0.397 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~ 37 (185)
..++.|+|.|.+||||||+.+.|.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 346789999999999999999987
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.91 E-value=0.00068 Score=47.73 Aligned_cols=21 Identities=33% Similarity=0.332 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-|+++|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 366789999999999998864
No 400
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.91 E-value=0.00053 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998854
No 401
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.91 E-value=0.0004 Score=50.61 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999864
No 402
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.90 E-value=0.00019 Score=50.00 Aligned_cols=21 Identities=43% Similarity=0.711 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-|+|.|++||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999864
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.90 E-value=0.00059 Score=48.56 Aligned_cols=24 Identities=13% Similarity=0.273 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.++.|++.|++||||||+.+.|..
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999863
No 404
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.89 E-value=0.00056 Score=45.93 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998864
No 405
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.89 E-value=0.00074 Score=45.57 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=20.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...-.+++.|++|+|||++++.+..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~ 65 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAI 65 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHH
Confidence 4456789999999999999988754
No 406
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.88 E-value=0.0005 Score=54.60 Aligned_cols=23 Identities=35% Similarity=0.229 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.++|+|++||||||+++.+.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999998754
No 407
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0004 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=22.0
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
.--.++|+|+.|||||||++.|++..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 44578999999999999999997653
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.85 E-value=0.0007 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.-.|++.|.+||||||+.+.|..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998854
No 409
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.85 E-value=0.0034 Score=48.00 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+++.|++|+|||++++.+...
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998654
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.85 E-value=0.0006 Score=48.32 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.+..-|++.|+.||||||+++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999998875
No 411
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.85 E-value=0.0005 Score=48.33 Aligned_cols=21 Identities=29% Similarity=0.357 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++++|++|+|||||+..+++
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999999863
No 412
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.85 E-value=0.0009 Score=46.18 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.9
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-.+...|++.|.+||||||+.+.|...
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHh
Confidence 356788999999999999999998754
No 413
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.83 E-value=0.00081 Score=45.55 Aligned_cols=23 Identities=26% Similarity=0.553 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...|++.|.+||||||+++.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999865
No 414
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.82 E-value=0.00051 Score=53.17 Aligned_cols=22 Identities=36% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++|+|+.||||||+++.+.+.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998763
No 415
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.80 E-value=0.0024 Score=47.56 Aligned_cols=21 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred EEEEcCCCCChHHHHHHHhCC
Q 029920 19 ILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~ 39 (185)
+.+.|+||+|||+|+..+...
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 689999999999999998753
No 416
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.80 E-value=0.00069 Score=48.68 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
+..+++.|++|+||||+++.+.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 446999999999999999998753
No 417
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.78 E-value=0.00063 Score=51.37 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
=+++++|++|+|||||++.+.+...
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999999999999999988743
No 418
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.77 E-value=0.00078 Score=45.70 Aligned_cols=20 Identities=35% Similarity=0.338 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 029920 18 RILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~ 37 (185)
-.+|+|+.|||||||++++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999974
No 419
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.77 E-value=0.0013 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+++.|++|+|||+|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999988864
No 420
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.77 E-value=0.0006 Score=50.12 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++|+|++|+|||||+..+++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~ 57 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQAL 57 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 478999999999999998754
No 421
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0017 Score=50.64 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.2
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-..+-.|++.|+||+|||+|++++++.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhc
Confidence 455667999999999999999999864
No 422
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.75 E-value=0.0006 Score=49.08 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.|+++|++||||||+.+.|.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
No 423
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.74 E-value=0.00063 Score=51.57 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.++++|+.||||||+++.|.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4689999999999999999854
No 424
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.74 E-value=0.0014 Score=42.92 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....|.+.|++|+|||++++.+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHh
Confidence 45567999999999999999998754
No 425
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.73 E-value=0.00086 Score=53.61 Aligned_cols=24 Identities=29% Similarity=0.410 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988543
No 426
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.72 E-value=0.001 Score=49.00 Aligned_cols=26 Identities=12% Similarity=0.047 Sum_probs=21.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+.-+++.|+||+|||+|++++...
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456778899999999999998754
No 427
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.0014 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.+++.|++|+|||++++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998865
No 428
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.69 E-value=0.00095 Score=53.88 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhhccC
Confidence 689999999999999999988644
No 429
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.69 E-value=0.0011 Score=47.06 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+..+++++|+|||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 4568999999999999999998854
No 430
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.68 E-value=0.0012 Score=46.74 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.3
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
....|++.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998653
No 431
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.0013 Score=52.62 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCCC
Confidence 579999999999999999998644
No 432
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.67 E-value=0.0017 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=21.9
Q ss_pred ccCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 12 KKEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 12 ~~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+.....+|+++|++|+||||+...|.+
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 344556899999999999999987643
No 433
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.67 E-value=0.00076 Score=53.12 Aligned_cols=22 Identities=45% Similarity=0.650 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.++++|+.|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4689999999999999999854
No 434
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.66 E-value=0.00083 Score=46.84 Aligned_cols=21 Identities=33% Similarity=0.289 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++++|++|+|||||+..+++
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999999999876
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.66 E-value=0.00083 Score=52.30 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
-=+++++|++|||||||++.+.+...
T Consensus 157 Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 157 GQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccC
Confidence 34789999999999999999987643
No 436
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.66 E-value=0.00082 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-++++|++|+|||||+..+++.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 5789999999999999998873
No 437
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.66 E-value=0.0015 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.9
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++|.|++|+||||+++.+.+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 438
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.63 E-value=0.0012 Score=48.51 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999875
No 439
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.63 E-value=0.001 Score=49.60 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~~ 40 (185)
..-++|.|+.|||||||++.+.+..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3457899999999999999998653
No 440
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.61 E-value=0.00089 Score=51.09 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.4
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
...-.++++|++|+|||||++.+.+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHh
Confidence 3445789999999999999999985
No 441
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.61 E-value=0.00087 Score=52.72 Aligned_cols=22 Identities=18% Similarity=0.256 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
=.++++|+.|||||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999999864
No 442
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.61 E-value=0.0014 Score=52.82 Aligned_cols=24 Identities=29% Similarity=0.307 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999987543
No 443
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.61 E-value=0.0014 Score=46.46 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=21.7
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
......|+++|++||||||+.+.|..
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34556899999999999999998864
No 444
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.0014 Score=53.10 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 589999999999999999988544
No 445
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.61 E-value=0.00099 Score=53.92 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCcC
Confidence 689999999999999999988644
No 446
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.60 E-value=0.00099 Score=50.07 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
..+++.|++|+||||+++.+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3499999999999999998866
No 447
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.58 E-value=0.0011 Score=53.71 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhcCcC
Confidence 689999999999999999988644
No 448
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.58 E-value=0.0032 Score=49.01 Aligned_cols=24 Identities=13% Similarity=0.157 Sum_probs=19.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHh
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~ 37 (185)
.+-.-|+|+|+.++|||+|+|.|.
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345567899999999999999654
No 449
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.58 E-value=0.0014 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.8
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 029920 19 ILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~ 37 (185)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4788999999999999864
No 450
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.58 E-value=0.0015 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+++.|++|+||||+++.+.+.
T Consensus 47 ~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 47 PHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998754
No 451
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.56 E-value=0.0016 Score=46.76 Aligned_cols=24 Identities=21% Similarity=0.285 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.+..+++.|++|+|||++++.+..
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 445689999999999999999875
No 452
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.56 E-value=0.0012 Score=48.33 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..-.+++.|++|+|||++++.+.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHH
Confidence 3467999999999999999998764
No 453
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.55 E-value=0.0015 Score=47.53 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=22.2
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....+++.|++|+|||++++.+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 44567999999999999999999754
No 454
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.55 E-value=0.044 Score=40.50 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=18.6
Q ss_pred CceeEE-EEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRI-LMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i-~v~G~~~~GKttli~~l~~~ 39 (185)
.+..++ .+-|++|+|||++++.+...
T Consensus 45 ~~~~~~~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 45 GKIPHIILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp TCCCSEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEeeCcCCCCHHHHHHHHHHH
Confidence 333344 44566999999999998754
No 455
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.54 E-value=0.0026 Score=48.16 Aligned_cols=33 Identities=36% Similarity=0.450 Sum_probs=24.5
Q ss_pred HHHhhccCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 7 IRKIKKKEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 7 ~~~~~~~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
+.........-.+.+.|++|+|||++++.+...
T Consensus 36 l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~ 68 (384)
T 2qby_B 36 IRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNE 68 (384)
T ss_dssp HHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred HHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 333333444558999999999999999988653
No 456
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.53 E-value=0.019 Score=42.78 Aligned_cols=26 Identities=38% Similarity=0.304 Sum_probs=21.7
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.....+++.|++|+|||++++.+...
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHH
Confidence 34457999999999999999998654
No 457
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.53 E-value=0.0029 Score=45.80 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
......+++.|++|+|||+++..+...
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 455678999999999999999998764
No 458
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.52 E-value=0.002 Score=52.27 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhCCCC
Confidence 589999999999999999988544
No 459
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.52 E-value=0.0027 Score=44.50 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.+++.|++|+||||+++.+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998754
No 460
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0021 Score=51.34 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999998644
No 461
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.50 E-value=0.0023 Score=44.53 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.+++.|+||+||||++.+++.
T Consensus 60 ~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999888764
No 462
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.50 E-value=0.00095 Score=53.85 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EEEEECCCCChHHHHHHHHhcCCC
Confidence 689999999999999999987544
No 463
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.49 E-value=0.0014 Score=48.29 Aligned_cols=26 Identities=27% Similarity=0.359 Sum_probs=21.9
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-.+++.|++|+|||++++.+.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHH
Confidence 34456999999999999999998764
No 464
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0022 Score=51.25 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 579999999999999999998644
No 465
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.45 E-value=0.0012 Score=47.70 Aligned_cols=27 Identities=22% Similarity=0.201 Sum_probs=22.0
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+...|++.|..||||||+++.|...
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHh
Confidence 345678999999999999999988754
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.45 E-value=0.002 Score=47.43 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=20.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
.....+++.|++|+|||++++.+..
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHH
Confidence 4455799999999999999986643
No 467
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.45 E-value=0.0013 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.253 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.+-..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCcc
Confidence 689999999999999999987543
No 468
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.41 E-value=0.0014 Score=47.70 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
-++|+|++|+|||||+..+++
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999988764
No 469
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.40 E-value=0.0024 Score=47.30 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=21.1
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+.-|+|+|++|||||||...|...
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh
Confidence 33456889999999999999998643
No 470
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.40 E-value=0.0026 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhCCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
.++++|+.|||||||++.+.|...
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999998644
No 471
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.37 E-value=0.0015 Score=48.53 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
.-.+.+.|++|+|||||++.+.+.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999998753
No 472
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.36 E-value=0.0023 Score=47.01 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
....+++.|++|+|||++++.+..
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999865
No 473
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.34 E-value=0.0026 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+++.|++|+||||+++.+.+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 34999999999999999988654
No 474
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.33 E-value=0.0025 Score=44.01 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhC
Q 029920 18 RILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~ 38 (185)
.|++.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999855
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.33 E-value=0.0014 Score=49.56 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=21.6
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-.+++.|++|+|||||++.+.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34457899999999999999998753
No 476
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.002 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=21.4
Q ss_pred EEEEcCCCCChHHHHHHHhCCCCc
Q 029920 19 ILMVGLDNSGKTTIVLKINGEDTS 42 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~~~~~~ 42 (185)
++++|+.|||||||++.+.|-..+
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~p 404 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALKP 404 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSCC
T ss_pred EEEECCCCCcHHHHHHHHhcCCCC
Confidence 799999999999999999886544
No 477
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.30 E-value=0.0027 Score=49.11 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456889999999999999998753
No 478
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.30 E-value=0.0014 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=17.6
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+.+.|+|.|++||||||+.+.|..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999988754
No 479
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.30 E-value=0.0018 Score=48.92 Aligned_cols=22 Identities=23% Similarity=0.129 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
-+.|+|++|||||||+..+++.
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998765
No 480
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.29 E-value=0.0048 Score=51.55 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..+-.|++.|+||+|||+|++++++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~e 261 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANE 261 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 34557999999999999999999875
No 481
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.28 E-value=0.0021 Score=47.42 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.1
Q ss_pred eeEEEEEcCCCCChHHHHHHHh
Q 029920 16 EMRILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~ 37 (185)
.-.++++|++|+||||++..|.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4478999999999999998874
No 482
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.27 E-value=0.0023 Score=48.65 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=17.1
Q ss_pred EEEEcCCCCChHHHHHHHh
Q 029920 19 ILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 19 i~v~G~~~~GKttli~~l~ 37 (185)
.+|+|+.|+|||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5689999999999999975
No 483
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0024 Score=45.25 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.0
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 029920 18 RILMVGLDNSGKTTIVLKIN 37 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~ 37 (185)
-++++|++|+|||||+..++
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47899999999999977663
No 484
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.26 E-value=0.0029 Score=47.10 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...+++.|+||+|||++++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 457999999999999999998754
No 485
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.26 E-value=0.021 Score=42.13 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.8
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
....+++.|++|+|||++++.+..
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999865
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.21 E-value=0.0033 Score=44.72 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCChHHHHHHHhCC
Q 029920 16 EMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...|++.|..||||||+++.|...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998654
No 487
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.21 E-value=0.0031 Score=43.65 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCChHHHHHHHhCCCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGEDT 41 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~~~ 41 (185)
..|+++|++|+|||||...|.....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999987643
No 488
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.20 E-value=0.0034 Score=46.16 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
-.+++.|++|+|||++++.+.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHH
Confidence 36999999999999999988653
No 489
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.20 E-value=0.0027 Score=47.34 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCChHHHHHHHhCC
Q 029920 17 MRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~~ 39 (185)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 490
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.17 E-value=0.0048 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.+++.|+||+|||++++.+..
T Consensus 71 ~~vLl~GppGtGKT~la~~la~ 92 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQ 92 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 491
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.14 E-value=0.003 Score=44.73 Aligned_cols=24 Identities=29% Similarity=0.334 Sum_probs=17.5
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+..-|++.|++||||||+++.|..
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999998854
No 492
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.13 E-value=0.0031 Score=47.37 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
.-|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999988864
No 493
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.12 E-value=0.0034 Score=46.48 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCChHHHHHHHhC
Q 029920 17 MRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 17 ~~i~v~G~~~~GKttli~~l~~ 38 (185)
-.++++|++|+||||++..|.+
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4588999999999999988753
No 494
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.12 E-value=0.0044 Score=48.37 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 13 KEKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 13 ~~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
......+++.|++|+||||+++.+...
T Consensus 47 ~~~~~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 47 AGHLHSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp HTCCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCcHHHHHHHHHHH
Confidence 334457999999999999999998764
No 495
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.11 E-value=0.0045 Score=48.61 Aligned_cols=26 Identities=19% Similarity=0.305 Sum_probs=21.5
Q ss_pred CceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 14 EKEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 14 ~~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
...-.++++|+||+|||++++.+...
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 44557899999999999999987543
No 496
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.11 E-value=0.0027 Score=50.87 Aligned_cols=25 Identities=20% Similarity=0.519 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCChHHHHHHHhCC
Q 029920 15 KEMRILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 15 ~~~~i~v~G~~~~GKttli~~l~~~ 39 (185)
+...++++|++|||||||++.|.+.
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHh
Confidence 4467999999999999999998764
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.08 E-value=0.0032 Score=43.92 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCChHHHHHHHhC
Q 029920 16 EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 16 ~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+..|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 498
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.08 E-value=0.0054 Score=44.41 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred HHHHHhhccC-c-eeEEEEEcCCCCChHHHHHHHhC
Q 029920 5 SIIRKIKKKE-K-EMRILMVGLDNSGKTTIVLKING 38 (185)
Q Consensus 5 ~~~~~~~~~~-~-~~~i~v~G~~~~GKttli~~l~~ 38 (185)
+++....+.. . .-.+++.|+||+|||.++.++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 3445544443 2 34599999999999999999876
No 499
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.05 E-value=0.0024 Score=56.32 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEcCCCCChHHHHHHHhCCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGED 40 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~~ 40 (185)
+|+++|+.|||||||++.|.+-.
T Consensus 1107 ~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp EEEEECSTTSSTTSHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCc
Confidence 79999999999999999997643
No 500
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.04 E-value=0.0028 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhCC
Q 029920 18 RILMVGLDNSGKTTIVLKINGE 39 (185)
Q Consensus 18 ~i~v~G~~~~GKttli~~l~~~ 39 (185)
.++++|++|+|||+|++.+.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
Done!