Query 029921
Match_columns 185
No_of_seqs 173 out of 1426
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 05:45:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4567 GTPase-activating prot 100.0 2.7E-37 5.9E-42 245.6 9.8 159 1-177 33-213 (370)
2 KOG1091 Ypt/Rab-specific GTPas 99.9 9.8E-28 2.1E-32 203.2 7.4 140 9-174 28-168 (625)
3 smart00164 TBC Domain in Tre-2 99.9 5.5E-27 1.2E-31 180.9 9.9 116 1-183 2-117 (199)
4 KOG2058 Ypt/Rab GTPase activat 99.9 1.2E-26 2.7E-31 195.1 9.9 74 105-184 195-269 (436)
5 COG5210 GTPase-activating prot 99.8 3.6E-21 7.8E-26 167.4 9.6 117 2-183 211-327 (496)
6 KOG1092 Ypt/Rab-specific GTPas 99.8 3.7E-21 8.1E-26 158.8 3.3 116 2-170 187-302 (484)
7 KOG2224 Uncharacterized conser 99.8 4.9E-21 1.1E-25 159.0 3.8 129 1-179 433-565 (781)
8 PF00566 RabGAP-TBC: Rab-GTPas 99.8 6.7E-19 1.4E-23 136.6 10.8 73 103-183 43-115 (214)
9 KOG2223 Uncharacterized conser 99.8 3.4E-19 7.4E-24 147.7 6.3 70 105-182 354-423 (586)
10 KOG2222 Uncharacterized conser 99.7 1.4E-17 3.1E-22 139.8 7.3 112 2-182 169-280 (848)
11 KOG2197 Ypt/Rab-specific GTPas 99.7 8.1E-18 1.8E-22 145.2 3.4 71 107-183 238-308 (488)
12 KOG2221 PDZ-domain interacting 99.6 2.1E-16 4.5E-21 121.0 3.2 74 103-183 139-212 (267)
13 KOG4347 GTPase-activating prot 99.5 4.8E-15 1E-19 128.3 3.5 112 1-183 200-311 (671)
14 KOG1102 Rab6 GTPase activator 99.5 2.8E-14 6.1E-19 120.9 4.6 68 108-183 187-254 (397)
15 KOG4436 Predicted GTPase activ 99.2 4E-12 8.7E-17 112.4 3.0 71 105-182 620-690 (948)
16 KOG1093 Predicted protein kina 99.1 1.2E-10 2.6E-15 100.3 5.1 71 107-182 391-462 (725)
17 KOG4436 Predicted GTPase activ 98.5 7.4E-07 1.6E-11 79.7 8.8 76 103-182 224-303 (948)
18 KOG2595 Predicted GTPase activ 98.2 7.3E-07 1.6E-11 73.0 1.8 63 107-170 97-159 (395)
19 KOG1648 Uncharacterized conser 97.6 3.3E-06 7.1E-11 72.4 -3.8 68 107-180 607-674 (813)
20 KOG2224 Uncharacterized conser 97.1 0.00052 1.1E-08 58.3 4.0 83 84-181 507-595 (781)
21 KOG3636 Uncharacterized conser 65.7 12 0.00026 32.8 4.6 72 107-182 67-140 (669)
22 KOG2801 Probable Rab-GAPs [Int 60.5 11 0.00023 31.2 3.3 44 133-176 109-152 (559)
23 PF08109 Antimicrobial14: Lact 47.1 14 0.00031 18.8 1.3 15 152-166 3-17 (31)
24 COG5460 Uncharacterized conser 36.3 29 0.00062 22.6 1.8 18 154-171 51-68 (82)
25 smart00188 IL10 Interleukin-10 34.4 73 0.0016 23.2 3.8 52 105-165 78-129 (137)
26 PF15128 T_cell_tran_alt: T-ce 20.5 97 0.0021 20.6 2.1 25 135-159 36-63 (92)
27 PF13864 Enkurin: Calmodulin-b 20.4 60 0.0013 21.8 1.3 26 27-52 40-65 (98)
No 1
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=2.7e-37 Score=245.60 Aligned_cols=159 Identities=55% Similarity=0.960 Sum_probs=134.1
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
+.|+|++.++|+.+|++||||+|++.+.|.+.++++|..|.+++++....|...... .+. ..
T Consensus 33 ~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~----------------~~v--~~ 94 (370)
T KOG4567|consen 33 FYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNS----------------KKV--DS 94 (370)
T ss_pred hcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccc----------------ccc--cc
Confidence 369998777999999999999999999999999999999999999988766532110 000 01
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcch----------------------hHHHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFAT----------------------SNQEAL 138 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~----------------------~~~~~L 138 (185)
..+..+|||+.+++|.|++||++.+.+.||++||.||.|+..||+.....++ -.....
T Consensus 95 ~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~ 174 (370)
T KOG4567|consen 95 NDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAA 174 (370)
T ss_pred CcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHH
Confidence 2256799999999999999999999999999999999999999998765541 123346
Q ss_pred HHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHh
Q 029921 139 KNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEF 177 (185)
Q Consensus 139 ~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~ 177 (185)
.|||++||+.||+||||||||+|+|||++||.+|+++++
T Consensus 175 erilfiyAKLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~ 213 (370)
T KOG4567|consen 175 ERILFIYAKLNPGIGYVQGMNEILAPIYYVFANDPDEEN 213 (370)
T ss_pred HHHHHHHhhcCCcchHHhhhHHHhhhhheeeccCCchhh
Confidence 899999999999999999999999999999999887655
No 2
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=9.8e-28 Score=203.18 Aligned_cols=140 Identities=37% Similarity=0.731 Sum_probs=126.8
Q ss_pred CChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccccCCCCCC
Q 029921 9 GIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSEITHDEHP 88 (185)
Q Consensus 9 ~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (185)
.+|+.+|+++||++|.+.+.|...+++.+..|..+.+.++.+|+..... .+.....++|
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~id~~~~~ra~~r~~r~~~L~dPh~~k~~---------------------~s~d~~idnP 86 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSWIDNLRRLRANYRRLRRRLLIDPHNLKEN---------------------HSPDLPIDNP 86 (625)
T ss_pred hhhhHHHHHhheecCCCchhHHHHHHHHhhhhhccccccccCccccccc---------------------cCCCcccCCc
Confidence 4899999999999999999999999999999999999999888864321 1123467999
Q ss_pred CCCCCCCccccccCChHHHHHHHHhhcCCCCCC-ccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHH
Q 029921 89 LSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYY 167 (185)
Q Consensus 89 l~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~ 167 (185)
||+.++|.|++||++.++.+.|++||.||||++ .||+.+ ..+.+|++||++||..||.+||.||||+|.||+++
T Consensus 87 LSq~~~S~W~rfF~d~EL~~~i~qDvsRtfPe~~~fFqs~-----~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~f 161 (625)
T KOG1091|consen 87 LSQNPQSVWNRFFRDAELEKTIDQDVSRTFPEHSLFFQSP-----EVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLF 161 (625)
T ss_pred cccCCCchhhhhcCcHHHHHhhcchhhccCcchhhhhcCc-----hhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhh
Confidence 999999999999999999999999999999999 899988 89999999999999999999999999999999999
Q ss_pred HhCCCCc
Q 029921 168 VFKSDPD 174 (185)
Q Consensus 168 ~~~~e~~ 174 (185)
|+.-|..
T Consensus 162 Vl~~D~q 168 (625)
T KOG1091|consen 162 VLHVDNQ 168 (625)
T ss_pred heehhHH
Confidence 9876544
No 3
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.94 E-value=5.5e-27 Score=180.95 Aligned_cols=116 Identities=34% Similarity=0.619 Sum_probs=95.6
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
.+|||++ +|+.+|+.++|+.+...+. .+..|.+++++...
T Consensus 2 ~~Gip~~--~R~~vW~~ll~~~~~~~~~-------~~~~Y~~l~~~~~~------------------------------- 41 (199)
T smart00164 2 RKGVPPS--LRGVVWKLLLNAQPMDTSA-------DKDLYSRLLKETAP------------------------------- 41 (199)
T ss_pred CCCCCHH--HHHHHHHHHhCCchhhhcc-------cchHHHHHHHhhcC-------------------------------
Confidence 3799999 9999999999998854432 36788887765421
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~ 160 (185)
.+.+..++|++||.||+|+..+|+.... ..++.|.|||.+|+.+||++|||||||+
T Consensus 42 ---------------------~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~~~~~~~p~~gY~QGm~~ 97 (199)
T smart00164 42 ---------------------KDKSIVHQIEKDLRRTFPEHSFFQDKEG---PGQESLRRVLKAYALYNPEVGYCQGMNF 97 (199)
T ss_pred ---------------------CChhhHHHHhcccCCCCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCCceeccHHH
Confidence 1223468999999999999999987544 7999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHhhhhhhh
Q 029921 161 ILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 161 i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
||++|++++.+ |+.|||+|.
T Consensus 98 i~~~ll~~~~~---e~~af~~~~ 117 (199)
T smart00164 98 LAAPLLLVMPD---EEDAFWCLV 117 (199)
T ss_pred HHHHHHHhcCC---HHHHHHHHH
Confidence 99999999876 666777764
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.2e-26 Score=195.06 Aligned_cols=74 Identities=32% Similarity=0.522 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCCCCC-ccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921 105 EIMEQIDRDVKRTHPDM-HFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~-~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
...++|+.|+.||||++ +.|....+ .++..|+|||.+||.+||.||||||||.|||++|+++.+ |+.|||+|+
T Consensus 195 ~~~~qI~~DL~RTfP~n~~~~~~~~~---~~~~~LrRvL~Aya~hNp~vGYCQGmNflAallLL~~~~---EE~AFW~Lv 268 (436)
T KOG2058|consen 195 PVVKQIKLDLPRTFPDNFKGFDSEDS---DGRQTLRRVLLAYARHNPSVGYCQGMNFLAALLLLLMPS---EEDAFWMLV 268 (436)
T ss_pred hHHHHHHhccccccCCCcccCCCCCc---hHHHHHHHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 46899999999999999 78888866 679999999999999999999999999999999999987 888999997
Q ss_pred c
Q 029921 184 F 184 (185)
Q Consensus 184 ~ 184 (185)
+
T Consensus 269 ~ 269 (436)
T KOG2058|consen 269 A 269 (436)
T ss_pred H
Confidence 5
No 5
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.85 E-value=3.6e-21 Score=167.42 Aligned_cols=117 Identities=34% Similarity=0.537 Sum_probs=91.9
Q ss_pred CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (185)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
+|||++ +|+.+|..++|+++. .......|..+.+.+.....
T Consensus 211 ~gip~~--~r~~vw~~~~~~~~~--------~~~~~~~y~~~~~~~~~~~~----------------------------- 251 (496)
T COG5210 211 KGIPNE--LRGDVWEFLLGIGFD--------LDKNPGLYERLLNLHREAKI----------------------------- 251 (496)
T ss_pred hcCChH--hhhhhHHHHhccchh--------hccCchHHHHHHHHHHhcCC-----------------------------
Confidence 689999 999999999999773 23344555555543321100
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (185)
Q Consensus 82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i 161 (185)
.......+|++||.||+|.+..|+...+ ...+.|.|||.+|+.+||++|||||||+|
T Consensus 252 --------------------~~~~~~~~i~~Dl~rt~~~~~~f~~~~s---~~~~~L~rvL~ays~~~p~vgY~QgMn~l 308 (496)
T COG5210 252 --------------------PTQEIISQIEKDLSRTFPDNSLFQTEIS---IRAENLRRVLKAYSLYNPEVGYVQGMNFL 308 (496)
T ss_pred --------------------CcHHHHHHHHccccccccccccccCccc---ccHHHHHHHHHHHHhcCCCCceeccHHHH
Confidence 0114589999999999999999998754 34456999999999999999999999999
Q ss_pred HHHHHHHhCCCCcHHhhhhhhh
Q 029921 162 LAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 162 ~~~ll~~~~~e~~~~~af~~f~ 183 (185)
+|+|+.++.. |+.|||||+
T Consensus 309 ~a~ll~~~~~---Ee~AF~~l~ 327 (496)
T COG5210 309 AAPLLLVLES---EEQAFWCLV 327 (496)
T ss_pred HHHHHHHhhh---hHHHHHHHH
Confidence 9999999987 777888875
No 6
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.7e-21 Score=158.82 Aligned_cols=116 Identities=33% Similarity=0.589 Sum_probs=103.1
Q ss_pred CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (185)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
+|||.. .|+.+|++|+||+|+++....-+++.+|++|..++.++.......
T Consensus 187 ~Gvp~~--~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~--------------------------- 237 (484)
T KOG1092|consen 187 NGVPSK--MRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNG--------------------------- 237 (484)
T ss_pred CCCCcc--ccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCc---------------------------
Confidence 699999 999999999999999999999999999999999999986532210
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (185)
Q Consensus 82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i 161 (185)
-.+.+..+||..|++|+.|+..+|+.. ..++.+.|||++|+.+||..||+||.|++
T Consensus 238 -------------------~~~~d~~rQI~id~prm~p~~~l~q~~-----~vq~~lerIl~iwairhpAsGyvqgindl 293 (484)
T KOG1092|consen 238 -------------------DEDQDTWRQIPIDIPRMNPHIPLFQQK-----IVQEMLERILYIWAIRHPASGYVQGINDL 293 (484)
T ss_pred -------------------cccCccccccccCCCCCCccccchhhH-----HHHHHHHHHHHHHHHhcccccccccceee
Confidence 023345789999999999999999988 89999999999999999999999999999
Q ss_pred HHHHHHHhC
Q 029921 162 LAPLYYVFK 170 (185)
Q Consensus 162 ~~~ll~~~~ 170 (185)
+.|++.++.
T Consensus 294 vtpf~vvfl 302 (484)
T KOG1092|consen 294 VTPFFVVFL 302 (484)
T ss_pred echhhhhhh
Confidence 999997764
No 7
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.82 E-value=4.9e-21 Score=158.95 Aligned_cols=129 Identities=32% Similarity=0.595 Sum_probs=100.3
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCC--cHHHHHHHHHHHHHHHHhhcc--CchhhhhhcccccchhhhhhhhccCCC
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGL--WPSELAKKRSQYKHFKDDLLV--NPSEITRRLDKSTIYESEEWKCESSGF 76 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~--~~~~l~~~r~~Y~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (185)
.+||... +|+.||++||.+|...++. ....+..+|++|.++.++-+. +|.+..
T Consensus 433 fggid~s--ir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~--------------------- 489 (781)
T KOG2224|consen 433 FGGIDKS--IRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHI--------------------- 489 (781)
T ss_pred eccchhh--hhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHH---------------------
Confidence 3699999 9999999999999887654 344567999999998766432 222110
Q ss_pred ccccccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccC
Q 029921 77 LSRSEITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQ 156 (185)
Q Consensus 77 ~~~~~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~Q 156 (185)
.|+++. .-.++|||.||.++++||.++.. ++.+.+++||.-||++||.+||-|
T Consensus 490 ----------------------~fwknv--q~tvdkdvvrtdrnn~ff~gddn---pn~e~mk~illn~avyn~~m~ysq 542 (781)
T KOG2224|consen 490 ----------------------AFWKNV--QFTVDKDVVRTDRNNPFFCGDDN---PNTESMKNILLNFAVYNPAMGYSQ 542 (781)
T ss_pred ----------------------HHHhhe--EEEEecceeeccCCCCcccCCCC---CcHHHHHHHHHhheeecccccccc
Confidence 111121 22488999999999999999887 899999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCcHHhhh
Q 029921 157 GMNEILAPLYYVFKSDPDEEFSV 179 (185)
Q Consensus 157 GM~~i~~~ll~~~~~e~~~~~af 179 (185)
||++++||.+.-..+|++.||+|
T Consensus 543 gmsdllapvlcevqnesetfwcf 565 (781)
T KOG2224|consen 543 GMSDLLAPVLCEVQNESETFWCF 565 (781)
T ss_pred cchhhcchhhhhhccccchhhhh
Confidence 99999888888888766544443
No 8
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.79 E-value=6.7e-19 Score=136.64 Aligned_cols=73 Identities=48% Similarity=0.780 Sum_probs=61.3
Q ss_pred ChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f 182 (185)
+.+..++|.+||.||+++...+... ..+..|.+||.+|+..+|++||+|||++|++++++++.+ ++.|||||
T Consensus 43 ~~~~~~~I~~Dv~rt~~~~~~~~~~-----~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~~ll~~~~~---e~~af~~~ 114 (214)
T PF00566_consen 43 DNKIFEQIDKDVNRTFPNSFLFKNE-----QNQKSLERILSAYAKYNPDVGYCQGMNDIAAPLLLVFLD---EEEAFWCF 114 (214)
T ss_dssp CHTCHHHHHHHHCTSSTSCCCSTTH-----HHHHHHHHHHHHHHHHTTTTSS-TTHHHHHHHHHHTCSH---HHHHHHHH
T ss_pred cchHHHHHHHhhhhhcccchhhhhc-----chHHHHHHHHHHhccccccccccchhhhhhhhhhhhccc---ccchhccc
Confidence 3455899999999999955555554 899999999999999999999999999999999988776 56677776
Q ss_pred h
Q 029921 183 H 183 (185)
Q Consensus 183 ~ 183 (185)
.
T Consensus 115 ~ 115 (214)
T PF00566_consen 115 V 115 (214)
T ss_dssp H
T ss_pred c
Confidence 4
No 9
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.77 E-value=3.4e-19 Score=147.74 Aligned_cols=70 Identities=27% Similarity=0.428 Sum_probs=62.6
Q ss_pred HHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f 182 (185)
.-+.+|+.|+.||||+..+|+..+ +..+.|..||.+|+.+.|++||+|||++|+|+|++.+. ...||-||
T Consensus 354 ~sv~~i~LDisrTfpsl~iFqk~G----Py~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnmd----~~~AFiaf 423 (586)
T KOG2223|consen 354 ASVELIKLDISRTFPSLSIFQKGG----PYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNMD----LADAFIAF 423 (586)
T ss_pred cchhheeechhccCcceeeeccCC----chHHHHHHHhhhheeecCccccccchHHHHHHHHHcCC----cHHHHHHH
Confidence 347899999999999999999886 79999999999999999999999999999999999885 45566555
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.71 E-value=1.4e-17 Score=139.78 Aligned_cols=112 Identities=29% Similarity=0.406 Sum_probs=93.0
Q ss_pred CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (185)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
+|||.. +|+..|+.|.|.+. ..+.....|+..++.+-.
T Consensus 169 ggiphs--lr~~lw~rlsga~~--------kkk~ae~sy~~ilk~~an-------------------------------- 206 (848)
T KOG2222|consen 169 GGIPHS--LRAFLWMRLSGALA--------KKKDAETSYEDILKACAN-------------------------------- 206 (848)
T ss_pred CCCCcc--hhHHHHHHhhhhhh--------hhccccccHHHHHHHhcc--------------------------------
Confidence 589999 99999999999854 223334567777665421
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (185)
Q Consensus 82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i 161 (185)
+...+-.||++|+-|+.|++..|...++ .+...|+|||.+.|...|++||||||.-|
T Consensus 207 --------------------dk~~~~~qiekdllr~lpnn~cf~k~n~---~gi~~lrrilk~ia~ifpdigycqg~gvi 263 (848)
T KOG2222|consen 207 --------------------DKLMIGKQIEKDLLRILPNNACFSKKNG---EGIEALRRILKCIAFIFPDIGYCQGMGVI 263 (848)
T ss_pred --------------------cccchhHHHHHHHHHhCCCcceeeCCCC---cchHHHHHHHhhheeecCCcccccCccHH
Confidence 1123458999999999999999999888 89999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcHHhhhhhh
Q 029921 162 LAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 162 ~~~ll~~~~~e~~~~~af~~f 182 (185)
+|.+++.+. |+.+||+.
T Consensus 264 va~lllf~~----ee~afwmm 280 (848)
T KOG2222|consen 264 VACLLLFCE----EENAFWMM 280 (848)
T ss_pred HHHHHHHhc----chhHHHHH
Confidence 999999886 77888875
No 11
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.69 E-value=8.1e-18 Score=145.17 Aligned_cols=71 Identities=27% Similarity=0.561 Sum_probs=62.1
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
...|.+||.||.+.+.+|.+... ++...|.+||.+|+.+|+++||||||+++++|++.++.+|. .+||||+
T Consensus 238 ~~~i~~dv~rtDr~~~~~~~~~n---~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~---~aFwcFv 308 (488)
T KOG2197|consen 238 KSRIEKDVGRTDRSLEFYEGEEN---PHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEV---EAFWCFV 308 (488)
T ss_pred hhhhhhhccccchhhhhhhcccc---cCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCch---HHHHHHH
Confidence 46799999999999999998732 35999999999999999999999999999999999999844 4666664
No 12
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-16 Score=121.05 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=68.5
Q ss_pred ChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f 182 (185)
+..+.+.|++|+.|-||.+..|..... .++..|+|+|.+|.+++|+.||||+-..|++++++.+. +++|||||
T Consensus 139 ~p~t~e~i~kdl~rqfp~hemf~s~~k---~gkqelfr~lka~ti~~pe~g~cq~qapiaa~llmhmp----~rdaf~~~ 211 (267)
T KOG2221|consen 139 DPKTAEGIHKDLHRQFPFHEMFGSSGK---TGKQELFRVLKAYTIYKPEEGYCQAQAPIAAVLLMHMP----ARDAFWCF 211 (267)
T ss_pred CCcchhhhccccccCCCcccccccccc---cchHHHHHHHHHHHHhCchhhhhhhhchHHHHHHhccc----HHHHHHHH
Confidence 445678999999999999999988776 78999999999999999999999999999999999998 89999999
Q ss_pred h
Q 029921 183 H 183 (185)
Q Consensus 183 ~ 183 (185)
+
T Consensus 212 v 212 (267)
T KOG2221|consen 212 V 212 (267)
T ss_pred H
Confidence 6
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.52 E-value=4.8e-15 Score=128.33 Aligned_cols=112 Identities=25% Similarity=0.393 Sum_probs=92.1
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
+.|||.. .|++.|.++.|... .+......|..+++....
T Consensus 200 ~~gipe~--~rgeiW~l~sGav~--------~~l~~~Geygkll~~~~G------------------------------- 238 (671)
T KOG4347|consen 200 YNGFPED--PRGEIWYLASGAVA--------SLLLNPGEYGKLLHSVTG------------------------------- 238 (671)
T ss_pred HHhcCCC--hHHHHHHhhhHHHH--------HhhcCcHHhhhhhhcccC-------------------------------
Confidence 4799999 99999999999733 455566777776654321
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~ 160 (185)
+..-..+.|++|+.|..|+++-|+.+ .+...|+|||.+||..||+|||||-||-
T Consensus 239 ---------------------~~~~a~eEIE~Dl~rsLpEhpA~Q~e-----~gi~aLR~vL~Aya~~Np~vGYcQaMNI 292 (671)
T KOG4347|consen 239 ---------------------KRSVATEEIEPDLGRSLPEHPAFQSE-----PGIAALRRVLTAYAWSNPEVGYCQAMNI 292 (671)
T ss_pred ---------------------CcccccccccCCCCCCCCcchhhhCC-----CchhhHHHHHHhhhccCCchhHHHHHHH
Confidence 01223567999999999999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHhhhhhhh
Q 029921 161 ILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 161 i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
+++.++.... ++.|||+++
T Consensus 293 V~s~lll~~~----EEeafwll~ 311 (671)
T KOG4347|consen 293 VGSELLLFCK----EEEAFWLLS 311 (671)
T ss_pred HHHhhhhhhc----cchHHHHHH
Confidence 9998887775 788999874
No 14
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.48 E-value=2.8e-14 Score=120.89 Aligned_cols=68 Identities=34% Similarity=0.525 Sum_probs=61.2
Q ss_pred HHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921 108 EQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 108 ~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
.+| +|+.||+|.+..|....+ ..++.|.+||.+|++++|++||||||..++++++.++. ++.|||.++
T Consensus 187 ~~~-~d~~Rt~~~~~~f~~~~~---~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~~----ee~af~~lv 254 (397)
T KOG1102|consen 187 EII-RDLSRTFPAHLLFRKRYG---VGQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYLP----EEEAFPLLV 254 (397)
T ss_pred HHH-hhccCcCcchhhhhhhcC---cccccccccchhhcccCCCcccccchhhHhhhhhccCc----hhhhhhhhh
Confidence 566 999999999999998666 88999999999999999999999999999999999987 667777664
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.23 E-value=4e-12 Score=112.41 Aligned_cols=71 Identities=28% Similarity=0.400 Sum_probs=63.3
Q ss_pred HHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f 182 (185)
+..+.|..|.-||||++++|...-+ .++..+.++|.+|+..+|++|||||..++|++||+.+. |+.||-.+
T Consensus 620 e~qhAi~idlgrtfp~h~~~~~qlg---~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~~----e~~afell 690 (948)
T KOG4436|consen 620 EQQHAILIDLGRTFPTHPYFSDQLG---LGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHMS----EENAFELL 690 (948)
T ss_pred HHHHHHHHhhccccCCCHHHHhhcc---ccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhcc----hhhHHHHH
Confidence 3467899999999999999998766 89999999999999999999999999999999999986 66666554
No 16
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=99.08 E-value=1.2e-10 Score=100.30 Aligned_cols=71 Identities=25% Similarity=0.461 Sum_probs=60.6
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHH-hCCCCcHHhhhhhh
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYV-FKSDPDEEFSVSTF 182 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~-~~~e~~~~~af~~f 182 (185)
-+||+.|++|+.........+ .+.+.|+|+|.+|+-.+|...|.||.-.+++||++. ++++..+|.++..|
T Consensus 391 drqievdiprchQyd~~lsSp-----~~~r~lrRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~f 462 (725)
T KOG1093|consen 391 DRQIEVDIPRCHQYDELLSSP-----KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATF 462 (725)
T ss_pred hhhhhcccchhhhcccccCCH-----HHHHHHHHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHH
Confidence 579999999999877777766 899999999999999999999999999999999987 46655555555554
No 17
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=98.47 E-value=7.4e-07 Score=79.74 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=63.0
Q ss_pred ChHHHHHHHHhhcCCCCCCccccCCCCcc----hhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhh
Q 029921 103 DSEIMEQIDRDVKRTHPDMHFFSGDSSFA----TSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFS 178 (185)
Q Consensus 103 ~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~----~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~a 178 (185)
+..+...|..|+.||.|++.+|....... .-.++.|+++...|...+-++|||||=+.+++.+++.+. ++.+
T Consensus 224 k~~~~~~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~~----~E~a 299 (948)
T KOG4436|consen 224 KELHIGIIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQMP----VEEA 299 (948)
T ss_pred hhHHHHHHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcCc----HHHH
Confidence 34567899999999999999998765410 125999999999999999999999999999999999986 5556
Q ss_pred hhhh
Q 029921 179 VSTF 182 (185)
Q Consensus 179 f~~f 182 (185)
|..+
T Consensus 300 ssv~ 303 (948)
T KOG4436|consen 300 SSVK 303 (948)
T ss_pred HHHH
Confidence 5544
No 18
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=98.17 E-value=7.3e-07 Score=72.99 Aligned_cols=63 Identities=19% Similarity=0.272 Sum_probs=44.0
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhC
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFK 170 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~ 170 (185)
.+|+..||.|++...+.-... ......++.|..++..--..+|.+.|-||.||||..|++++.
T Consensus 97 ~nQV~LDv~RSl~rfppg~p~-~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~g 159 (395)
T KOG2595|consen 97 YNQVILDVERSLGRFPPGIPK-ELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVVG 159 (395)
T ss_pred cceEEEehhhhhccCCCCCCH-HHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhhh
Confidence 468999999997544321111 000134556666555556777999999999999999999986
No 19
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=97.60 E-value=3.3e-06 Score=72.38 Aligned_cols=68 Identities=31% Similarity=0.557 Sum_probs=57.6
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhh
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVS 180 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~ 180 (185)
+..|++|+.|..++..||.+. .+.+. +++.++|...|-+-||.|||.|+.+|++..+.++...-++|.
T Consensus 607 ~~~~~kd~e~~~~~~~~fs~~-----~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s 674 (813)
T KOG1648|consen 607 LHRIDKDVERCDRNLMFFSNK-----DNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFS 674 (813)
T ss_pred eeeecchhhhCcchheeecCC-----cchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCc
Confidence 467999999999999999987 55666 889999999999999999999999999988887665554443
No 20
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=97.12 E-value=0.00052 Score=58.34 Aligned_cols=83 Identities=20% Similarity=0.312 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhC------CCCCccCc
Q 029921 84 HDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLN------PGIRYVQG 157 (185)
Q Consensus 84 ~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~------p~igY~QG 157 (185)
+-.||..-+++++ +.+.++.|-....--.|.+.+-++. .+.|.-||-- +.| .-+|-+||
T Consensus 507 drnn~ff~gddnp------n~e~mk~illn~avyn~~m~ysqgm-------sdllapvlce--vqnesetfwcfvglmqg 571 (781)
T KOG2224|consen 507 DRNNPFFCGDDNP------NTESMKNILLNFAVYNPAMGYSQGM-------SDLLAPVLCE--VQNESETFWCFVGLMQG 571 (781)
T ss_pred cCCCCcccCCCCC------cHHHHHHHHHhheeecccccccccc-------hhhcchhhhh--hccccchhhhhhhhhcc
Confidence 4456776666653 6677887876654444444433332 2333333321 111 13799999
Q ss_pred HHHHHHHHHHHhCCCCcHHhhhhh
Q 029921 158 MNEILAPLYYVFKSDPDEEFSVST 181 (185)
Q Consensus 158 M~~i~~~ll~~~~~e~~~~~af~~ 181 (185)
|++++||++.-..+|++.||+|..
T Consensus 572 msdlvapilaevldesdtfwcfvg 595 (781)
T KOG2224|consen 572 MSDLVAPILAEVLDESDTFWCFVG 595 (781)
T ss_pred chhhhhhHHHhhhccccchhhhhh
Confidence 999999999999987775555543
No 21
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=65.66 E-value=12 Score=32.76 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=47.1
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccC--cHHHHHHHHHHHhCCCCcHHhhhhhh
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQ--GMNEILAPLYYVFKSDPDEEFSVSTF 182 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~Q--GM~~i~~~ll~~~~~e~~~~~af~~f 182 (185)
..+|++|..|.--...-=.... .+....|.-++.-||+.. ++.|.- |--.|+-||+..-..-+++|.+|.++
T Consensus 67 Q~~lr~DC~~~~d~l~n~ee~~---v~vv~dlES~iTfYCK~R-n~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai 140 (669)
T KOG3636|consen 67 QCALRNDCRKLADGLKNKEEDK---VPVVSDLESFITFYCKKR-NMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAI 140 (669)
T ss_pred hhHHHHHHHHHHhhcCCchhhc---cchhHhhhhHhhhhhhcc-CCcccccccHHHHHHHHHHhcCCcchhhhhhHhh
Confidence 3567777766532221111110 144557888999998864 677755 55677888888877888899999876
No 22
>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.53 E-value=11 Score=31.20 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHH
Q 029921 133 SNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEE 176 (185)
Q Consensus 133 ~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~ 176 (185)
.+....+.||.+.+..-|+|++|-.+--++++++..-.+|++.|
T Consensus 109 rgegavrkilKOGanqfpdisfcpalpavvalllhysideaecf 152 (559)
T KOG2801|consen 109 RGEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECF 152 (559)
T ss_pred cCchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHH
Confidence 45667889999999999999999999999999988777754443
No 23
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=47.10 E-value=14 Score=18.85 Aligned_cols=15 Identities=27% Similarity=0.549 Sum_probs=11.0
Q ss_pred CCccCcHHHHHHHHH
Q 029921 152 IRYVQGMNEILAPLY 166 (185)
Q Consensus 152 igY~QGM~~i~~~ll 166 (185)
.||.||+-+.+--.+
T Consensus 3 sgyiqgipdflkgyl 17 (31)
T PF08109_consen 3 SGYIQGIPDFLKGYL 17 (31)
T ss_pred cccccccHHHHHHHH
Confidence 489999887765544
No 24
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=36.34 E-value=29 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=15.2
Q ss_pred ccCcHHHHHHHHHHHhCC
Q 029921 154 YVQGMNEILAPLYYVFKS 171 (185)
Q Consensus 154 Y~QGM~~i~~~ll~~~~~ 171 (185)
|.||+++-.+.+..-+.+
T Consensus 51 YNQGi~da~a~i~ekl~d 68 (82)
T COG5460 51 YNQGIKDARAVIEEKLAD 68 (82)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 789999999998877654
No 25
>smart00188 IL10 Interleukin-10 family. Interleukin-10 inhibits the synthesis of a number of cytokines, including IFN-gamma, IL-2, IL-3, TNF and GM-CSF produced by activated macrophages and by helper T cells.
Probab=34.36 E-value=73 Score=23.20 Aligned_cols=52 Identities=19% Similarity=0.340 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHH
Q 029921 105 EIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPL 165 (185)
Q Consensus 105 ~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~l 165 (185)
+.+..|.+|+.|+. .+|..+ ...+.+.+|..+|.+.. +-|=.-+|.++=..|
T Consensus 78 ~~f~~lk~~l~~C~---~~~~Ce-----~~~~a~~qi~~~f~kl~-~kG~~KAmgElDill 129 (137)
T smart00188 78 EKLKTLRLRLRRCH---RFLPCE-----NKSKAVEQVKNAFNKLQ-EKGVYKAMSEFDIFI 129 (137)
T ss_pred HHHHHHHHHHHHCc---cccCcc-----chhHHHHHHHHHHHHHH-HhHHHHHHHHHHHHH
Confidence 34788999999995 345554 56777899999999998 888888888875544
No 26
>PF15128 T_cell_tran_alt: T-cell leukemia translocation-altered
Probab=20.46 E-value=97 Score=20.59 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhhCCCC---CccCcHH
Q 029921 135 QEALKNILIVFAKLNPGI---RYVQGMN 159 (185)
Q Consensus 135 ~~~L~rIL~~y~~~~p~i---gY~QGM~ 159 (185)
.-.|.-|+++|-.+-+.| -|.|||.
T Consensus 36 vlsLl~I~lAWk~yG~TV~dmyyRqG~g 63 (92)
T PF15128_consen 36 VLSLLAIHLAWKVYGNTVNDMYYRQGTG 63 (92)
T ss_pred HHHHHHHHHHHHHhccccccceeCCCCC
Confidence 345666777777776554 5899985
No 27
>PF13864 Enkurin: Calmodulin-binding
Probab=20.40 E-value=60 Score=21.85 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=20.1
Q ss_pred CCcHHHHHHHHHHHHHHHHhhccCch
Q 029921 27 GLWPSELAKKRSQYKHFKDDLLVNPS 52 (185)
Q Consensus 27 ~~~~~~l~~~r~~Y~~l~~~~~~~~~ 52 (185)
.+....++..++.+.++..+|...|.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~~lp~ 65 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQKLPF 65 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34557788899999999998876654
Done!