Query 029921
Match_columns 185
No_of_seqs 173 out of 1426
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 08:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fkm_A Protein (GYP1P), ORF YO 100.0 2.7E-31 9.1E-36 223.8 11.3 116 1-171 31-146 (396)
2 2qfz_A TBC1 domain family memb 100.0 2.2E-31 7.4E-36 220.7 9.9 128 1-183 48-196 (345)
3 2qq8_A TBC1 domain family memb 100.0 3.6E-29 1.2E-33 206.6 7.5 131 2-183 47-178 (334)
4 3hzj_A Rabgap1L, RAB GTPase-ac 99.9 9.1E-27 3.1E-31 190.3 11.0 108 2-183 32-139 (310)
5 3qye_A TBC1 domain family memb 99.9 1.5E-27 5.2E-32 196.5 2.0 70 107-183 104-173 (331)
6 4hl4_A TBC1 domain family memb 99.9 2.1E-24 7.1E-29 175.0 5.0 73 106-183 82-154 (292)
7 3qwl_A TBC1 domain family memb 99.5 2.4E-15 8.3E-20 121.7 -2.1 42 3-46 51-92 (294)
8 1erd_A Pheromone ER-2; NMR {Eu 34.6 11 0.00037 19.6 0.5 14 147-160 12-25 (40)
9 2js3_A Uncharacterized protein 34.5 9.6 0.00033 24.0 0.3 12 153-164 17-28 (96)
10 1v2z_A Circadian clock protein 19.1 1.1E+02 0.0038 20.2 3.3 40 18-59 5-44 (111)
No 1
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.97 E-value=2.7e-31 Score=223.85 Aligned_cols=116 Identities=32% Similarity=0.560 Sum_probs=103.4
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
.+|||+. +|+.||++|||++|.+.++|...+++++..|.++++++.....
T Consensus 31 ~~GIP~~--lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~---------------------------- 80 (396)
T 1fkm_A 31 WNGIPKI--HRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQH---------------------------- 80 (396)
T ss_dssp TTCCCGG--GHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSC----------------------------
T ss_pred HcCCCHH--HHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccC----------------------------
Confidence 3799999 9999999999999999999999999999999999988753100
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~ 160 (185)
..+.+..++|++||.||+|++++|+.. .+++.|.|||++||++||++|||||||+
T Consensus 81 --------------------~~~~~~~~qI~~Dv~RT~p~~~~F~~~-----~~~~~L~rIL~aya~~np~iGY~QGmn~ 135 (396)
T 1fkm_A 81 --------------------SRDIPTWHQIEIDIPRTNPHIPLYQFK-----SVQNSLQRILYLWAIRHPASGYVQGIND 135 (396)
T ss_dssp --------------------STHHHHHHHHHHHGGGSSTTSGGGGSH-----HHHHHHHHHHHHHHHHCTTTCSCTTHHH
T ss_pred --------------------cccHHHHHHHHHHhhhhCCCcccccCc-----hHHHHHHHHHHHHHHHCCCCCcccCcHH
Confidence 134567899999999999999999976 8999999999999999999999999999
Q ss_pred HHHHHHHHhCC
Q 029921 161 ILAPLYYVFKS 171 (185)
Q Consensus 161 i~~~ll~~~~~ 171 (185)
|++||++++..
T Consensus 136 i~a~ll~v~~~ 146 (396)
T 1fkm_A 136 LVTPFFETFLT 146 (396)
T ss_dssp HHHHHHHHHHG
T ss_pred HHHHHHHHHHH
Confidence 99999998743
No 2
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.97 E-value=2.2e-31 Score=220.65 Aligned_cols=128 Identities=27% Similarity=0.496 Sum_probs=108.9
Q ss_pred CCCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 1 MQGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 1 ~~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
.+|||+. +|+.||++|||++|.+.+.|...+++++..|.++++++...+..
T Consensus 48 ~~GiP~~--~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~--------------------------- 98 (345)
T 2qfz_A 48 WSGIPKP--VRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRND--------------------------- 98 (345)
T ss_dssp TTCCCGG--GHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC---------------------------------
T ss_pred HCCCCHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc---------------------------
Confidence 3799999 99999999999999999999999999999999999887532100
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~ 160 (185)
-.+.+..++|++||.||+|+ ++|+.. ..++.|.|||.+||++||++|||||||+
T Consensus 99 --------------------~~~~~~~~~I~~Dv~RT~p~-~~F~~~-----~~~~~L~rIL~~ya~~~p~vgY~QGm~~ 152 (345)
T 2qfz_A 99 --------------------EVHQDTYRQIHIDIPRMSPE-ALILQP-----KVTEIFERILFIWAIRHPASGYVQGIND 152 (345)
T ss_dssp ----------------------CHHHHHHHHHHGGGCSCH-HHHTSH-----HHHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred --------------------cchHHHHHHHHHhCcccCCc-cccCCc-----hHHHHHHHHHHHHHHHCCCCCcccChHH
Confidence 02446789999999999999 999876 7889999999999999999999999999
Q ss_pred HHHHHHHHhCCCC---------------------cHHhhhhhhh
Q 029921 161 ILAPLYYVFKSDP---------------------DEEFSVSTFH 183 (185)
Q Consensus 161 i~~~ll~~~~~e~---------------------~~~~af~~f~ 183 (185)
|+|||++++.++. .|+.|||||+
T Consensus 153 i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~ 196 (345)
T 2qfz_A 153 LVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMS 196 (345)
T ss_dssp HHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHH
Confidence 9999999885432 3788999985
No 3
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.6e-29 Score=206.63 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=91.8
Q ss_pred CCCCCCCCChHHHHHHHhCcC-CCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCcccc
Q 029921 2 QGIPDGAGIRSTVWKLLLVYL-PPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRS 80 (185)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~-~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
+|||++ +|+.||++|||+. +.+...+...+++.+..|.++......
T Consensus 47 ~GIP~~--lR~~vW~~llg~~~~~~~~~y~~ll~~~~~~~~~~~~~~~~------------------------------- 93 (334)
T 2qq8_A 47 QGIPPS--VRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSE------------------------------- 93 (334)
T ss_dssp TCCCHH--HHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHC----------------------------------------
T ss_pred CCCCHH--HHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHhcccccc-------------------------------
Confidence 799999 9999999999984 333333445555555555554332110
Q ss_pred ccCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHH
Q 029921 81 EITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNE 160 (185)
Q Consensus 81 ~~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~ 160 (185)
.+..+.|++.. .+.+..++|++||.||+|++++|+..+ .+++.|.|||.+||.+||++|||||||+
T Consensus 94 -~~~~d~~~~~~---------~~~~~~~~I~~Dv~RT~p~~~~F~~~~----~~~~~L~rIL~aya~~~p~vgY~QGm~~ 159 (334)
T 2qq8_A 94 -VENEDAGFSAA---------DREASLELIKLDISRTFPNLCIFQQGG----PYHDMLHSILGAYTCYRPDVGYVQGMSF 159 (334)
T ss_dssp -----------------------CCHHHHHHHHHHTSSGGGCSSSTTS----TTHHHHHHHHHHHHHHCTTTCCCTTHHH
T ss_pred -Ccccccccccc---------cchhHHHHHHHHHhhcCCCchhhcCCC----chHHHHHHHHHHHHHhCCCCCcchhHHH
Confidence 01111222111 234568999999999999999998753 6789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcHHhhhhhhh
Q 029921 161 ILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 161 i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
|+|+|++++. |+.|||||+
T Consensus 160 iaa~lLl~~~----E~~aF~~~~ 178 (334)
T 2qq8_A 160 IAAVLILNLD----TADAFIAFS 178 (334)
T ss_dssp HHHHHHHHSC----HHHHHHHHH
T ss_pred HHHHHHhcCC----HHHHHHHHH
Confidence 9999999875 788999885
No 4
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.94 E-value=9.1e-27 Score=190.30 Aligned_cols=108 Identities=26% Similarity=0.421 Sum_probs=90.6
Q ss_pred CCCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcccccchhhhhhhhccCCCccccc
Q 029921 2 QGIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLDKSTIYESEEWKCESSGFLSRSE 81 (185)
Q Consensus 2 ~Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (185)
+|||+. +|+.||++|+|+.+. ...+..|..++++.
T Consensus 32 ~GIP~~--lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~---------------------------------- 66 (310)
T 3hzj_A 32 SGVPEA--LRAEVWQLLAGCHDN---------QAMLDRYRILITKD---------------------------------- 66 (310)
T ss_dssp HCCCGG--GHHHHHHHHTTCCCC---------HHHHHHHHHHTTSC----------------------------------
T ss_pred CCCCHH--HHHHHHHHHHCCCcc---------hhHHHHHHHHHhcc----------------------------------
Confidence 599999 999999999999762 23446677653220
Q ss_pred cCCCCCCCCCCCCCccccccCChHHHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHH
Q 029921 82 ITHDEHPLSLGKSSIWNQFFQDSEIMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEI 161 (185)
Q Consensus 82 ~~~~~~pl~~~~~s~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i 161 (185)
....++|++||.||+|++++|....+ .+++.|.|||.+|+.+||++|||||||+|
T Consensus 67 ----------------------~~~~~~I~~Dv~Rt~p~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i 121 (310)
T 3hzj_A 67 ----------------------SAQESVITRDIHRTFPAHDYFKDTGG---DGQESLYKICKAYSVYDEDIGYCQGQSFL 121 (310)
T ss_dssp ----------------------CTTHHHHHHHHTTSSTTSTTTSSTTS---HHHHHHHHHHHHHHHHCTTTCSCTTHHHH
T ss_pred ----------------------CCcHHHHHHHHHhhCCCchhhcCCCc---hhHHHHHHHHHHHHHHCCCCCccCCHHHH
Confidence 11257999999999999999998765 78999999999999999999999999999
Q ss_pred HHHHHHHhCCCCcHHhhhhhhh
Q 029921 162 LAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 162 ~~~ll~~~~~e~~~~~af~~f~ 183 (185)
+|+|++++. |+.|||||+
T Consensus 122 aa~lL~~~~----e~~aF~~l~ 139 (310)
T 3hzj_A 122 AAVLLLHMP----EEQAFCVLV 139 (310)
T ss_dssp HHHHHHHSC----HHHHHHHHH
T ss_pred HHHHHHhCC----HHHHHHHHH
Confidence 999999984 788888875
No 5
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.93 E-value=1.5e-27 Score=196.49 Aligned_cols=70 Identities=27% Similarity=0.387 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921 107 MEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 107 ~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
.++|++||.||+|++++|....+ .+++.|.|||.+|+.+||++|||||||+|+|+|++++. |+.|||||+
T Consensus 104 ~~~I~~Dv~Rt~~~~~~f~~~~~---~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~----E~~aF~~l~ 173 (331)
T 3qye_A 104 QHAILIDLGRTFPTHPYFSAQLG---AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS----EEEAFKMLK 173 (331)
T ss_dssp HHHHHHHHTTSSTTSTTTCSTTC---HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSC----HHHHHHHHH
T ss_pred hhHHHHhhcccCCCchhhcCCCc---ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhh----HHHHHHHHH
Confidence 47999999999999999998765 89999999999999999999999999999999998884 778888885
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.89 E-value=2.1e-24 Score=175.04 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCCCCccccCCCCcchhHHHHHHHHHHHHHhhCCCCCccCcHHHHHHHHHHHhCCCCcHHhhhhhhh
Q 029921 106 IMEQIDRDVKRTHPDMHFFSGDSSFATSNQEALKNILIVFAKLNPGIRYVQGMNEILAPLYYVFKSDPDEEFSVSTFH 183 (185)
Q Consensus 106 ~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~~~~L~rIL~~y~~~~p~igY~QGM~~i~~~ll~~~~~e~~~~~af~~f~ 183 (185)
..++|++||.||+|+++.|..... ....++.|.|||.+|+.+||++|||||||+|+|+|++++. |+.|||||+
T Consensus 82 ~~~qI~~Dv~RT~~~~~~~~~~~~-~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~----e~~aF~~l~ 154 (292)
T 4hl4_A 82 DYQQVLLDVRRSLRRFPPGMPEEQ-REGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVG----ERLATSLVE 154 (292)
T ss_dssp THHHHHHHHHTTGGGSCTTSCHHH-HHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHC----HHHHHHHHH
T ss_pred hHHHHHHhhhhhhhhccCCCCHHH-HHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcC----HHHHHHHHH
Confidence 368999999999999887754210 0156889999999999999999999999999999999885 888999885
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=99.46 E-value=2.4e-15 Score=121.71 Aligned_cols=42 Identities=29% Similarity=0.506 Sum_probs=40.1
Q ss_pred CCCCCCCChHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHHHHh
Q 029921 3 GIPDGAGIRSTVWKLLLVYLPPDRGLWPSELAKKRSQYKHFKDD 46 (185)
Q Consensus 3 Gip~~~~~R~~vW~~lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~ 46 (185)
|||+. +|+.||++||||+|.+++.|..+++++|++|.++++.
T Consensus 51 ~IP~~--~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~ 92 (294)
T 3qwl_A 51 PLPSM--YRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHA 92 (294)
T ss_dssp CCCHH--HHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCCHH--HHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence 49999 9999999999999999999999999999999999876
No 8
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=34.59 E-value=11 Score=19.65 Aligned_cols=14 Identities=21% Similarity=-0.019 Sum_probs=9.9
Q ss_pred hhCCCCCccCcHHH
Q 029921 147 KLNPGIRYVQGMNE 160 (185)
Q Consensus 147 ~~~p~igY~QGM~~ 160 (185)
..|.-.|||||--.
T Consensus 12 cehtmcgycqgply 25 (40)
T 1erd_A 12 CEHTMCGYCQGPLY 25 (40)
T ss_dssp TCGGGGGGSCHHHH
T ss_pred ccccccccccCCee
Confidence 45667899998533
No 9
>2js3_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural G PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris}
Probab=34.49 E-value=9.6 Score=24.02 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=9.4
Q ss_pred CccCcHHHHHHH
Q 029921 153 RYVQGMNEILAP 164 (185)
Q Consensus 153 gY~QGM~~i~~~ 164 (185)
-|.|||-++++-
T Consensus 17 lyfqgM~~~a~E 28 (96)
T 2js3_A 17 LYFQGMTDTAAE 28 (96)
T ss_dssp BTTBSTTTHHHH
T ss_pred eeeccccccCHH
Confidence 499999887653
No 10
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=19.14 E-value=1.1e+02 Score=20.19 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=29.0
Q ss_pred HhCcCCCCCCCcHHHHHHHHHHHHHHHHhhccCchhhhhhcc
Q 029921 18 LLVYLPPDRGLWPSELAKKRSQYKHFKDDLLVNPSEITRRLD 59 (185)
Q Consensus 18 lLg~~~~~~~~~~~~l~~~r~~Y~~l~~~~~~~~~~~~~~~~ 59 (185)
+++.+|+ .+.++.+++.+..|+.++-.|...+......++
T Consensus 5 f~r~l~~--~er~~ll~~L~~~YR~ill~YF~~d~~~nq~Id 44 (111)
T 1v2z_A 5 FFRRMSP--ADKRKLLDELRSIYRTIVLEYFNTDAKVNERID 44 (111)
T ss_dssp HHHHHCC--SCCHHHHHHHHHHHHHHHHHTTCTTSCHHHHHH
T ss_pred HHHhCCH--HHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 4444554 445788999999999999999987766554433
Done!