Query 029923
Match_columns 185
No_of_seqs 156 out of 510
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 08:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jun_A Midline-1; B-BOX, TRIM, 97.9 5.2E-06 1.8E-10 59.5 2.7 77 2-78 4-92 (101)
2 2ffw_A Midline-1; B-BOX, ring 87.4 0.32 1.1E-05 34.0 2.4 41 2-42 31-75 (78)
3 2did_A Tripartite motif protei 84.3 0.97 3.3E-05 28.7 3.4 39 3-47 10-49 (53)
4 2yrg_A Tripartite motif-contai 84.1 0.76 2.6E-05 30.3 2.9 38 3-46 16-54 (59)
5 1fre_A Nuclear factor XNF7; zi 82.0 0.86 2.9E-05 27.5 2.3 29 3-31 5-34 (42)
6 3ddt_A E3 ubiquitin-protein li 79.6 1.4 4.8E-05 27.5 2.7 30 3-32 8-39 (48)
7 2egm_A Tripartite motif-contai 78.6 0.73 2.5E-05 30.2 1.2 29 3-31 20-49 (57)
8 4hc9_A Trans-acting T-cell-spe 73.6 1.9 6.5E-05 32.7 2.5 69 2-74 6-88 (115)
9 2yvr_A Transcription intermedi 73.2 2.5 8.7E-05 26.3 2.7 38 3-46 8-46 (50)
10 2jun_A Midline-1; B-BOX, TRIM, 72.9 2.5 8.4E-05 29.6 2.8 31 2-32 60-92 (101)
11 2d8u_A Ubiquitin ligase TRIM63 72.0 4 0.00014 26.4 3.5 44 2-51 9-54 (64)
12 2csv_A Tripartite motif protei 70.6 2.8 9.6E-05 28.1 2.6 41 3-49 20-60 (72)
13 2dja_A Midline-2; tripartite m 68.1 5.9 0.0002 27.0 3.8 42 3-50 20-63 (84)
14 1f62_A Transcription factor WS 50.9 14 0.00047 23.2 3.0 45 3-51 2-49 (51)
15 2d8v_A Zinc finger FYVE domain 50.6 13 0.00043 26.4 3.0 44 2-46 9-53 (67)
16 2ffw_A Midline-1; B-BOX, ring 49.7 4.7 0.00016 28.0 0.7 36 43-78 30-65 (78)
17 1z60_A TFIIH basal transcripti 46.0 7 0.00024 26.7 1.1 31 3-33 17-51 (59)
18 2yqq_A Zinc finger HIT domain- 40.3 16 0.00056 24.7 2.2 26 1-26 12-38 (56)
19 2lri_C Autoimmune regulator; Z 38.2 19 0.00065 24.4 2.3 42 3-51 14-58 (66)
20 2csz_A Synaptotagmin-like prot 37.3 9.4 0.00032 27.5 0.7 42 2-52 26-73 (76)
21 1nvp_C Transcription initiatio 36.8 11 0.00036 27.3 0.9 10 158-167 46-55 (76)
22 1zbd_B Rabphilin-3A; G protein 35.5 17 0.00058 28.0 1.9 45 2-51 56-106 (134)
23 2dja_A Midline-2; tripartite m 35.0 12 0.00043 25.3 1.0 31 48-78 20-51 (84)
24 2d8v_A Zinc finger FYVE domain 34.5 26 0.00088 24.8 2.5 32 43-78 8-40 (67)
25 2co8_A NEDD9 interacting prote 29.6 44 0.0015 22.4 3.1 57 17-76 12-75 (82)
26 2ehe_A Four and A half LIM dom 29.2 29 0.001 22.9 2.1 62 13-76 4-74 (82)
27 2e6s_A E3 ubiquitin-protein li 28.8 33 0.0011 23.9 2.3 38 2-50 11-48 (77)
28 1weo_A Cellulose synthase, cat 28.6 40 0.0014 25.2 2.8 36 38-73 11-50 (93)
29 2yt5_A Metal-response element- 27.1 26 0.00089 22.9 1.5 27 3-32 8-35 (66)
30 2egq_A FHL1 protein; LIM domai 27.0 13 0.00045 24.3 -0.0 58 13-73 4-74 (77)
31 1mm2_A MI2-beta; PHD, zinc fin 26.2 78 0.0027 20.7 3.7 23 3-32 11-33 (61)
32 2lvu_A Zinc finger and BTB dom 31.7 14 0.0005 18.1 0.0 22 21-43 3-24 (26)
33 2zet_C Melanophilin; complex, 25.5 28 0.00096 27.4 1.6 42 2-51 69-116 (153)
34 2yql_A PHD finger protein 21A; 24.9 38 0.0013 21.7 2.0 23 3-32 11-33 (56)
35 2lvr_A Zinc finger and BTB dom 30.0 16 0.00055 18.2 0.0 23 21-44 4-26 (30)
36 1v6g_A Actin binding LIM prote 23.8 25 0.00086 23.2 0.9 64 12-78 3-75 (81)
37 2e6r_A Jumonji/ARID domain-con 23.7 44 0.0015 23.8 2.2 26 3-32 18-43 (92)
38 1x63_A Skeletal muscle LIM-pro 23.0 21 0.00071 23.6 0.4 59 13-74 4-72 (82)
39 1nh2_C Transcription initiatio 22.4 28 0.00095 25.3 1.0 9 158-166 48-56 (79)
40 2olm_A Nucleoporin-like protei 22.0 46 0.0016 25.8 2.2 31 2-33 26-57 (140)
41 3shb_A E3 ubiquitin-protein li 21.6 51 0.0017 23.0 2.2 38 3-51 12-49 (77)
42 1x3h_A Leupaxin; paxillin fami 20.9 31 0.001 22.6 0.9 57 13-73 4-69 (80)
43 3asl_A E3 ubiquitin-protein li 20.8 49 0.0017 22.4 1.9 16 3-18 4-19 (70)
44 2a20_A Regulating synaptic mem 20.5 61 0.0021 22.6 2.3 45 2-51 10-59 (62)
45 2fc7_A ZZZ3 protein; structure 20.4 1.4E+02 0.005 20.8 4.4 30 3-32 23-60 (82)
No 1
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.90 E-value=5.2e-06 Score=59.53 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=61.2
Q ss_pred CCCCCCC----CCceEEeccCccccChhhccccccCCcCCCCceee-eec------ccccCCCCCcccCCCCCCcccccc
Q 029923 2 KKCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHSRT-LLC------HVCQSLTPWNGSGPKLGPTISVCN 70 (185)
Q Consensus 2 ~~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~Rv-pLC------~~C~~~~A~~~sg~C~~daasLC~ 70 (185)
..|.+|. .+|+++|..+.+.||..|...+|..++.+++|..+ ++- ..|..++...+...|..+...+|.
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC~ 83 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLICA 83 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEECH
T ss_pred CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccch
Confidence 3699997 37999999999999999999999888888899876 332 247766433334469999999999
Q ss_pred cccc-CCCC
Q 029923 71 VCVG-NGSG 78 (185)
Q Consensus 71 sCd~-~~h~ 78 (185)
.|.. ..|.
T Consensus 84 ~C~~~~~H~ 92 (101)
T 2jun_A 84 LCKLVGRHR 92 (101)
T ss_dssp HHHHHTTTS
T ss_pred hcCCCCCcC
Confidence 9986 6775
No 2
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=87.39 E-value=0.32 Score=34.04 Aligned_cols=41 Identities=22% Similarity=0.417 Sum_probs=34.0
Q ss_pred CCCCCCC----CCceEEeccCccccChhhccccccCCcCCCCcee
Q 029923 2 KKCELCG----SPAKMFCESDQASLCWDCDAKVHGANFLVANHSR 42 (185)
Q Consensus 2 ~~Cd~C~----apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~R 42 (185)
..|++|. .+|+..|....+.||..|=...|...+.+++|.=
T Consensus 31 v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L 75 (78)
T 2ffw_A 31 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL 75 (78)
T ss_dssp CBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred ccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence 3799996 3699999999999999998877877777778863
No 3
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=84.32 E-value=0.97 Score=28.71 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=28.4
Q ss_pred CCCCCCCCceEEeccCccccChhhcc-ccccCCcCCCCceeeeecc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (185)
+|..-+.+-.|||..|...+|..|-. .-| +.|..++|-.
T Consensus 10 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e 49 (53)
T 2did_A 10 LCPQHHEALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG 49 (53)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred cChhhCCeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence 45555567789999999999999976 455 3566666543
No 4
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.13 E-value=0.76 Score=30.28 Aligned_cols=38 Identities=26% Similarity=0.705 Sum_probs=27.7
Q ss_pred CCCCCCCCceEEeccCccccChhhcc-ccccCCcCCCCceeeeec
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLC 46 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC 46 (185)
+|..-+.+-.|||..|.+.+|..|-. .-| +.|..++|-
T Consensus 16 ~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ 54 (59)
T 2yrg_A 16 HCARHGEKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTS 54 (59)
T ss_dssp BCTTTCCBCCEEETTTCSEECHHHHTSTTT------TTCCEEECC
T ss_pred cChhhCceeeeecCCCCcEEecccCCCCcC------CCCcEeeHH
Confidence 45555567789999999999999976 445 245555554
No 5
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=82.03 E-value=0.86 Score=27.54 Aligned_cols=29 Identities=28% Similarity=0.594 Sum_probs=23.0
Q ss_pred CCCCCCCCceEEeccCccccChhhcc-ccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDA-KVH 31 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (185)
+|..-+.+-.|||..|.+.+|..|-. .-|
T Consensus 5 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 34 (42)
T 1fre_A 5 KCSEHDERLKLYCKDDGTLSCVICRDSLKH 34 (42)
T ss_dssp CCCSSCSSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred cchhhCCeeeEEeCCCCeEEeccCCCCCCC
Confidence 45555567789999999999999976 445
No 6
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=79.59 E-value=1.4 Score=27.46 Aligned_cols=30 Identities=17% Similarity=0.482 Sum_probs=22.3
Q ss_pred CCCCCC-CCceEEeccCccccChhhc-ccccc
Q 029923 3 KCELCG-SPAKMFCESDQASLCWDCD-AKVHG 32 (185)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CD-a~VHs 32 (185)
+|..-. .+-.|||..|...+|..|- ..-|.
T Consensus 8 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~ 39 (48)
T 3ddt_A 8 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK 39 (48)
T ss_dssp BCSSSTTSBCCEEETTTTEEECHHHHHHSTTT
T ss_pred cCCCCCCccccEEcCCCCeeEcccccCCCcCC
Confidence 344444 4577999999999999996 44563
No 7
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.61 E-value=0.73 Score=30.24 Aligned_cols=29 Identities=31% Similarity=0.760 Sum_probs=23.0
Q ss_pred CCCCCCCCceEEeccCccccChhhcc-ccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDA-KVH 31 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (185)
+|..-+.+-.|||..|.+.+|..|-. .-|
T Consensus 20 ~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH 49 (57)
T 2egm_A 20 ICPKHQEALKLFCEVDEEAICVVCRESRSH 49 (57)
T ss_dssp BCTTTCCBCCEEETTTTEEECHHHHHSHHH
T ss_pred cChhhCceeeEEcCCCCcEEecccCCCCCC
Confidence 45555567889999999999999976 445
No 8
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=73.58 E-value=1.9 Score=32.69 Aligned_cols=69 Identities=28% Similarity=0.568 Sum_probs=42.3
Q ss_pred CCCCCCC-CCceEEeccC-ccccChhhc--cccccCCcCCCCcee--------eeecccccC--CCCCcccCCCCCCccc
Q 029923 2 KKCELCG-SPAKMFCESD-QASLCWDCD--AKVHGANFLVANHSR--------TLLCHVCQS--LTPWNGSGPKLGPTIS 67 (185)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD-~A~LC~~CD--a~VHsAN~La~rH~R--------vpLC~~C~~--~~A~~~sg~C~~daas 67 (185)
+.|..|+ ....+|=+.+ ...||..|. .+.|..|..+.+..+ ...|..|.. .|.|.- ......
T Consensus 6 ~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~nRP~~KpKKR~~~~~~~~~~C~~C~t~~tp~WRr----~~~g~~ 81 (115)
T 4hc9_A 6 RECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQNRPLIKPKRRLSAARRAGTSCANCQTTTTTLWRR----NANGDP 81 (115)
T ss_dssp CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSCCCCSSCCCCCCCCCCTTCCCTTTCCSCCSSCEE----CTTSCE
T ss_pred CCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccccccccccccccccccccccCCCcCCCCcceeEE----CCCCCC
Confidence 5799999 3333333444 358999999 566777764432221 236888885 344552 334468
Q ss_pred ccccccc
Q 029923 68 VCNVCVG 74 (185)
Q Consensus 68 LC~sCd~ 74 (185)
||..|-.
T Consensus 82 lCNaCgl 88 (115)
T 4hc9_A 82 VCNACGL 88 (115)
T ss_dssp ECHHHHH
T ss_pred cchHHHH
Confidence 9999943
No 9
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=73.17 E-value=2.5 Score=26.30 Aligned_cols=38 Identities=32% Similarity=0.686 Sum_probs=28.1
Q ss_pred CCCCC-CCCceEEeccCccccChhhccccccCCcCCCCceeeeec
Q 029923 3 KCELC-GSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLC 46 (185)
Q Consensus 3 ~Cd~C-~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (185)
.|..- +.+-.|||..|...+|..|-..-| +.|.-++|-
T Consensus 8 ~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~ 46 (50)
T 2yvr_A 8 YCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLE 46 (50)
T ss_dssp BCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETT
T ss_pred cCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHH
Confidence 56666 367789999999999999977555 246555553
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=72.90 E-value=2.5 Score=29.57 Aligned_cols=31 Identities=23% Similarity=0.474 Sum_probs=25.3
Q ss_pred CCCCCCC-CCceEEeccCccccChhhcc-cccc
Q 029923 2 KKCELCG-SPAKMFCESDQASLCWDCDA-KVHG 32 (185)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHs 32 (185)
+.|.... .+..+||..|...+|..|.. .-|.
T Consensus 60 ~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~ 92 (101)
T 2jun_A 60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHR 92 (101)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHHTTTS
T ss_pred CcCcCcCCCcceEECCCCCCccchhcCCCCCcC
Confidence 3577775 77899999999999999986 5663
No 11
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=71.96 E-value=4 Score=26.43 Aligned_cols=44 Identities=18% Similarity=0.365 Sum_probs=32.4
Q ss_pred CCCCCC-CCCceEEeccCccccChhhcc-ccccCCcCCCCceeeeecccccC
Q 029923 2 KKCELC-GSPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 2 ~~Cd~C-~apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
+.|..- +.+-.|||..|...+|..|-. .-|. .|.-++|-...+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~------~H~~~~l~~a~~~ 54 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHK------ACEVAPLQSVFQG 54 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTT------SSCEECTTTCCSS
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCC------CCCeeCHHHHHHH
Confidence 356666 367889999999999999975 4562 5777777665543
No 12
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=70.65 E-value=2.8 Score=28.11 Aligned_cols=41 Identities=32% Similarity=0.711 Sum_probs=29.6
Q ss_pred CCCCCCCCceEEeccCccccChhhccccccCCcCCCCceeeeecccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVC 49 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C 49 (185)
.|..-+.+-.+||..|...+|..|-..-| +.|.-++|-..-
T Consensus 20 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~ea~ 60 (72)
T 2csv_A 20 KCPVHGKTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEEAK 60 (72)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHHHH
T ss_pred cCcccCCceEEEeCCCCeEEccccCCCCC------CCCCEecHHHHH
Confidence 45555567789999999999999976555 356666665443
No 13
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=68.10 E-value=5.9 Score=26.96 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=30.8
Q ss_pred CCCCCC-CCceEEeccCccccChhhcc-ccccCCcCCCCceeeeeccccc
Q 029923 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCHVCQ 50 (185)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~~C~ 50 (185)
.|..-. .+-.+||..|...+|..|-. .-| +.|.-++|-...+
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea~~ 63 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE 63 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHHHHH
Confidence 566664 67889999999999999976 555 3466666655444
No 14
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=50.89 E-value=14 Score=23.18 Aligned_cols=45 Identities=27% Similarity=0.594 Sum_probs=24.7
Q ss_pred CCCCCCCCceEEeccCccccChhhccccccC--C-cCCCCceeeeecccccC
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGA--N-FLVANHSRTLLCHVCQS 51 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsA--N-~La~rH~RvpLC~~C~~ 51 (185)
.|.+|+... ..+...+|..|+...|.. + +|...=...|+|..|..
T Consensus 2 ~C~vC~~~~----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 477777322 134567788898888842 1 22222233556666653
No 15
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.56 E-value=13 Score=26.45 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=36.9
Q ss_pred CCCCCCCCCceEEeccC-ccccChhhccccccCCcCCCCceeeeec
Q 029923 2 KKCELCGSPAKMFCESD-QASLCWDCDAKVHGANFLVANHSRTLLC 46 (185)
Q Consensus 2 ~~Cd~C~apA~vyC~aD-~A~LC~~CDa~VHsAN~La~rH~RvpLC 46 (185)
+.|-+|..-|+|.|... .-..|..|=+..|. .+=.+.|+.++.-
T Consensus 9 pWC~ICneDAtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~ 53 (67)
T 2d8v_A 9 PWCCICNEDATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYH 53 (67)
T ss_dssp SSCTTTCSCCCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCC
T ss_pred CeeEEeCCCCeEEecCCCCceehHHHHHHHcc-chhhhccceeecc
Confidence 68999997799999988 56889999999994 4567889888863
No 16
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=49.66 E-value=4.7 Score=28.00 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=26.3
Q ss_pred eeecccccCCCCCcccCCCCCCccccccccccCCCC
Q 029923 43 TLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNGSG 78 (185)
Q Consensus 43 vpLC~~C~~~~A~~~sg~C~~daasLC~sCd~~~h~ 78 (185)
..+|+.|...++......|+.+.++||..|....|.
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~ 65 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 65 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcC
Confidence 357999986332333346999999999999886564
No 17
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=45.95 E-value=7 Score=26.66 Aligned_cols=31 Identities=32% Similarity=0.590 Sum_probs=24.4
Q ss_pred CCCCCC-CC---ceEEeccCccccChhhccccccC
Q 029923 3 KCELCG-SP---AKMFCESDQASLCWDCDAKVHGA 33 (185)
Q Consensus 3 ~Cd~C~-ap---A~vyC~aD~A~LC~~CDa~VHsA 33 (185)
.|-.|. .- .++.|......+|..||.-||..
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhHHHHhh
Confidence 477887 32 24669999999999999999943
No 18
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.34 E-value=16 Score=24.69 Aligned_cols=26 Identities=23% Similarity=0.550 Sum_probs=22.3
Q ss_pred CCCCCCCCCCceEEeccCccccCh-hh
Q 029923 1 MKKCELCGSPAKMFCESDQASLCW-DC 26 (185)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~A~LC~-~C 26 (185)
|.+|.+|+.++.+-|....+..|. .|
T Consensus 12 ~~~C~vC~~~~kY~CPrC~~~yCSl~C 38 (56)
T 2yqq_A 12 TVVCVICLEKPKYRCPACRVPYCSVVC 38 (56)
T ss_dssp CCCCTTTCSCCSEECTTTCCEESSHHH
T ss_pred CCccCcCcCCCeeeCCCCCCCeeCHHH
Confidence 457999999899999999998887 66
No 19
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=38.25 E-value=19 Score=24.43 Aligned_cols=42 Identities=24% Similarity=0.528 Sum_probs=25.4
Q ss_pred CCCCCCCCceEEeccCccccChhhcccccc--CC-cCCCCceeeeecccccC
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--AN-FLVANHSRTLLCHVCQS 51 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN-~La~rH~RvpLC~~C~~ 51 (185)
.|.+|+.. +...+|..|++..|. .+ +|...=...|+|..|..
T Consensus 14 ~C~vC~~~-------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 14 RCGVCGDG-------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CCTTTSCC-------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CcCCCCCC-------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 57888722 235667788888884 22 23333345677888864
No 20
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.29 E-value=9.4 Score=27.48 Aligned_cols=42 Identities=26% Similarity=0.619 Sum_probs=25.1
Q ss_pred CCCCCCC-CCc-----eEEeccCccccChhhccccccCCcCCCCceeeeecccccCC
Q 029923 2 KKCELCG-SPA-----KMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQSL 52 (185)
Q Consensus 2 ~~Cd~C~-apA-----~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~~ 52 (185)
+.|-.|+ .-. ...|.......|..|.... .+ ..|+|-+|...
T Consensus 26 r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~Crv~~--------~~-~~W~C~VC~k~ 73 (76)
T 2csz_A 26 RTCARCQESLGRLSPKTNTCRGCNHLVCRDCRIQE--------SN-GTWRCKVCSGP 73 (76)
T ss_dssp CBCSSSCCBCSSSCTTTSEETTTTEECCTTSEEEC--------ST-TCEEEHHHHSS
T ss_pred cchhhhCccccccccCCCcCcccChhhcccccccC--------CC-CCEEEeeCchh
Confidence 4677777 333 3446666666666665443 12 67888888754
No 21
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=36.75 E-value=11 Score=27.32 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=5.2
Q ss_pred ccceeeeecc
Q 029923 158 ESQMSFSLKH 167 (185)
Q Consensus 158 ~~~~~~~~~~ 167 (185)
+++--+.||-
T Consensus 46 KnkWKc~LKd 55 (76)
T 1nvp_C 46 KNKWKFHLKD 55 (76)
T ss_dssp TTEEEEEEEE
T ss_pred CceEEEEEec
Confidence 4555555553
No 22
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=35.52 E-value=17 Score=27.97 Aligned_cols=45 Identities=27% Similarity=0.746 Sum_probs=35.3
Q ss_pred CCCCCCC-CC-----ceEEeccCccccChhhccccccCCcCCCCceeeeecccccC
Q 029923 2 KKCELCG-SP-----AKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 2 ~~Cd~C~-ap-----A~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
..|..|. .. ....|....-..|..|...+.. ++....|+|.+|..
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~-----~~~~~~W~C~vC~k 106 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSN-----NRPHPVWLCKICLE 106 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCC-----SSSSCCEEEHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCC-----CCCccceechhhHH
Confidence 4688898 32 3578999999999999888753 25678899999984
No 23
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=35.03 E-value=12 Score=25.27 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=21.7
Q ss_pred cccCCCCCcccCCCCCCcccccccccc-CCCC
Q 029923 48 VCQSLTPWNGSGPKLGPTISVCNVCVG-NGSG 78 (185)
Q Consensus 48 ~C~~~~A~~~sg~C~~daasLC~sCd~-~~h~ 78 (185)
.|..+....+...|..+...+|..|.. ..|.
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~ 51 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHR 51 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTT
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCC
Confidence 466554333334699999999999987 6664
No 24
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=34.45 E-value=26 Score=24.82 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=21.5
Q ss_pred eeecccccCCCCCcccCCCCCC-ccccccccccCCCC
Q 029923 43 TLLCHVCQSLTPWNGSGPKLGP-TISVCNVCVGNGSG 78 (185)
Q Consensus 43 vpLC~~C~~~~A~~~sg~C~~d-aasLC~sCd~~~h~ 78 (185)
.|-|-+|..-+.+. |+++ .-..|+.|-...|.
T Consensus 8 ~pWC~ICneDAtlr----C~gCdgDLYC~rC~rE~H~ 40 (67)
T 2d8v_A 8 LPWCCICNEDATLR----CAGCDGDLYCARCFREGHD 40 (67)
T ss_dssp CSSCTTTCSCCCEE----ETTTTSEEECSSHHHHHTT
T ss_pred CCeeEEeCCCCeEE----ecCCCCceehHHHHHHHcc
Confidence 45677887664333 6655 56788888888773
No 25
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.63 E-value=44 Score=22.39 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=37.3
Q ss_pred cCccccChhhccccccCCcCC----CCceeeeecccccCC-CCCcccCCC--CCCccccccccccCC
Q 029923 17 SDQASLCWDCDAKVHGANFLV----ANHSRTLLCHVCQSL-TPWNGSGPK--LGPTISVCNVCVGNG 76 (185)
Q Consensus 17 aD~A~LC~~CDa~VHsAN~La----~rH~RvpLC~~C~~~-~A~~~sg~C--~~daasLC~sCd~~~ 76 (185)
.-.+..|..|...|..+..|. ..|..-..|..|..+ ....+ + ..+...+|..|....
T Consensus 12 ~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 12 AGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGY---EQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSE---ECCTTTCCCEETTTCCCC
T ss_pred CCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCce---eEeCcCCEEEChHHHHhh
Confidence 345788999999997554443 257777788888853 22221 2 246778888886544
No 26
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.23 E-value=29 Score=22.89 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=37.8
Q ss_pred EEeccCc----cccChhhccccccCCcCC-----CCceeeeecccccCCCCCcccCCCCCCccccccccccCC
Q 029923 13 MFCESDQ----ASLCWDCDAKVHGANFLV-----ANHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNG 76 (185)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La-----~rH~RvpLC~~C~~~~A~~~sg~C~~daasLC~sCd~~~ 76 (185)
+||..|- +..|..|...|.....++ ..|..-..|..|..+-... ..-..+...+|..|....
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~--~f~~~~~~~~C~~c~~~~ 74 (82)
T 2ehe_A 4 GSSGPCYDNTFANTCAECQQLIGHDSRELFYEDRHFHEGCFRCCRCQRSLADE--PFTCQDSELLCNDCYCSA 74 (82)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCSSCCBCCCSSCCCBTTTSBCTTTCCBCSSC--CEEEETTEEEETTTSSCC
T ss_pred eechhHhCcccCCcCccCCCccccCcEEEEeCCccccccCCeecCCCCccCCC--ccEeeCCEEECHHHHhhh
Confidence 5676662 467999999998322222 2577667788887532211 112456678888886543
No 27
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.78 E-value=33 Score=23.91 Aligned_cols=38 Identities=34% Similarity=0.802 Sum_probs=21.8
Q ss_pred CCCCCCCCCceEEeccCccccChhhccccccCCcCCCCceeeeeccccc
Q 029923 2 KKCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQ 50 (185)
Q Consensus 2 ~~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~ 50 (185)
..|..|.....++|..+ .|..|...-+. ..+++|+.|.
T Consensus 11 ~~c~~C~~~~~w~C~~c---~C~vC~~~~~~--------~~ll~CD~C~ 48 (77)
T 2e6s_A 11 TECDLCGGDPEKKCHSC---SCRVCGGKHEP--------NMQLLCDECN 48 (77)
T ss_dssp CCCTTTCSCSSSCCSSS---SCSSSCCCCCS--------TTEEECSSSC
T ss_pred ccChhhcCCCCeECCCC---CCcCcCCcCCC--------CCEEEcCCCC
Confidence 46777774446777554 56666543221 2455677665
No 28
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=28.63 E-value=40 Score=25.23 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=23.5
Q ss_pred CCceeeeecccccCCCCCcc----cCCCCCCccccccccc
Q 029923 38 ANHSRTLLCHVCQSLTPWNG----SGPKLGPTISVCNVCV 73 (185)
Q Consensus 38 ~rH~RvpLC~~C~~~~A~~~----sg~C~~daasLC~sCd 73 (185)
.+|.-.++|++|...-.+.. -..|..++..||..|.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCy 50 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCY 50 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHH
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHH
Confidence 45666788888885322111 1268888888888884
No 29
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=27.07 E-value=26 Score=22.85 Aligned_cols=27 Identities=19% Similarity=0.635 Sum_probs=15.9
Q ss_pred CCCCCCCC-ceEEeccCccccChhhcccccc
Q 029923 3 KCELCGSP-AKMFCESDQASLCWDCDAKVHG 32 (185)
Q Consensus 3 ~Cd~C~ap-A~vyC~aD~A~LC~~CDa~VHs 32 (185)
.|.+|+.. .. ......+|..|+...|.
T Consensus 8 ~C~vC~~~~~~---~~~~ll~Cd~C~~~~H~ 35 (66)
T 2yt5_A 8 VCTICQEEYSE---APNEMVICDKCGQGYHQ 35 (66)
T ss_dssp CBSSSCCCCCB---TTBCEEECSSSCCEEET
T ss_pred CCCCCCCCCCC---CCCCEEECCCCChHHHh
Confidence 57777722 10 12345677788888884
No 30
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=27.04 E-value=13 Score=24.29 Aligned_cols=58 Identities=16% Similarity=0.277 Sum_probs=33.7
Q ss_pred EEeccCc----cccChhhcccccc----CCcCC----CCceeeeecccccCC-CCCcccCCCCCCccccccccc
Q 029923 13 MFCESDQ----ASLCWDCDAKVHG----ANFLV----ANHSRTLLCHVCQSL-TPWNGSGPKLGPTISVCNVCV 73 (185)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHs----AN~La----~rH~RvpLC~~C~~~-~A~~~sg~C~~daasLC~sCd 73 (185)
+||..|- +..|..|...|.. +..+. ..|..-..|..|..+ .... .-..+...+|..|.
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~---f~~~~~~~yC~~cy 74 (77)
T 2egq_A 4 GSSGDCYKNFVAKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKR---FVFHQEQVYCPDCA 74 (77)
T ss_dssp SCCTTCCCSCCCCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSC---CCEETTEECCHHHH
T ss_pred eEchhHhchhhCccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCc---cEeECCEEEChHHh
Confidence 4666662 5679999999884 22221 246555677777753 2211 12445667777664
No 31
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=26.17 E-value=78 Score=20.67 Aligned_cols=23 Identities=22% Similarity=0.543 Sum_probs=15.0
Q ss_pred CCCCCCCCceEEeccCccccChhhcccccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (185)
.|.+|+. .....+|..|+...|.
T Consensus 11 ~C~vC~~-------~g~ll~Cd~C~~~fH~ 33 (61)
T 1mm2_A 11 FCRVCKD-------GGELLCCDTCPSSYHI 33 (61)
T ss_dssp SCTTTCC-------CSSCBCCSSSCCCBCS
T ss_pred cCCCCCC-------CCCEEEcCCCCHHHcc
Confidence 4666663 1345677788888774
No 32
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=31.69 E-value=14 Score=18.09 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=14.3
Q ss_pred ccChhhccccccCCcCCCCceee
Q 029923 21 SLCWDCDAKVHGANFLVANHSRT 43 (185)
Q Consensus 21 ~LC~~CDa~VHsAN~La~rH~Rv 43 (185)
+.|..|+...-.... +.+|+|+
T Consensus 3 ~~C~~C~k~f~~~~~-l~~H~~~ 24 (26)
T 2lvu_A 3 YVCERCGKRFVQSSQ-LANHIRH 24 (26)
Confidence 457788877664433 4678774
No 33
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.54 E-value=28 Score=27.35 Aligned_cols=42 Identities=19% Similarity=0.485 Sum_probs=31.9
Q ss_pred CCCCCCCC------CceEEeccCccccChhhccccccCCcCCCCceeeeecccccC
Q 029923 2 KKCELCGS------PAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 2 ~~Cd~C~a------pA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
+.|-.|.. .....|..+....|..|...+ +....|+|.+|..
T Consensus 69 ~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~--------~~~~~W~C~vC~k 116 (153)
T 2zet_C 69 THCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAH--------PEEQGWLCDPCHL 116 (153)
T ss_dssp TBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECC--------SSSSSCEEHHHHH
T ss_pred ccchhhcCccccccCCCCcCCCCCchhhccccccc--------CCCCcEeeHHHHH
Confidence 36888883 356889999999999998422 3457899999984
No 34
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.93 E-value=38 Score=21.66 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=14.3
Q ss_pred CCCCCCCCceEEeccCccccChhhcccccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (185)
.|.+|+.. ....+|..|+...|.
T Consensus 11 ~C~vC~~~-------g~ll~Cd~C~~~~H~ 33 (56)
T 2yql_A 11 FCSVCRKS-------GQLLMCDTCSRVYHL 33 (56)
T ss_dssp SCSSSCCS-------SCCEECSSSSCEECS
T ss_pred CCccCCCC-------CeEEEcCCCCcceEC
Confidence 56677632 245667777777774
No 35
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=30.03 E-value=16 Score=18.16 Aligned_cols=23 Identities=17% Similarity=0.439 Sum_probs=14.9
Q ss_pred ccChhhccccccCCcCCCCceeee
Q 029923 21 SLCWDCDAKVHGANFLVANHSRTL 44 (185)
Q Consensus 21 ~LC~~CDa~VHsAN~La~rH~Rvp 44 (185)
+.|..|+...-.... +.+|+|+-
T Consensus 4 ~~C~~C~k~f~~~~~-l~~H~~~h 26 (30)
T 2lvr_A 4 YVCIHCQRQFADPGA-LQRHVRIH 26 (30)
Confidence 567788877664443 46787753
No 36
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.77 E-value=25 Score=23.25 Aligned_cols=64 Identities=19% Similarity=0.373 Sum_probs=38.6
Q ss_pred eEEeccC----ccccChhhccccccCCcCC----CCceeeeecccccCCCC-CcccCCCCCCccccccccccCCCC
Q 029923 12 KMFCESD----QASLCWDCDAKVHGANFLV----ANHSRTLLCHVCQSLTP-WNGSGPKLGPTISVCNVCVGNGSG 78 (185)
Q Consensus 12 ~vyC~aD----~A~LC~~CDa~VHsAN~La----~rH~RvpLC~~C~~~~A-~~~sg~C~~daasLC~sCd~~~h~ 78 (185)
.+||..| -+..|..|...|. ...|. ..|..-..|..|..+-. ..+ .-+.....+|..|...+-.
T Consensus 3 ~~yC~~dy~~~~~~~C~~C~~~I~-~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~--~~~~~~~~~C~~C~~~~~~ 75 (81)
T 1v6g_A 3 SGSSGLDYQRLYGTRCFSCDQFIE-GEVVSALGKTYHPDCFVCAVCRLPFPPGDR--VTFNGKECMCQKCSLPVSV 75 (81)
T ss_dssp CCCCCSCGGGSCCCBCTTTCCBCC-SCCEEETTEEECTTTSSCSSSCCCCCSSSC--EEEETTEEEEHHHHSCCSS
T ss_pred CCcchHHHHhHhCCcCccccCEec-cceEEECCceeCccCCccccCCCCCCCCCE--EEeCCCCEEChhhhcccCC
Confidence 4678877 2568999999887 33321 13655567888875321 111 1123344689999877654
No 37
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.68 E-value=44 Score=23.81 Aligned_cols=26 Identities=31% Similarity=0.708 Sum_probs=15.7
Q ss_pred CCCCCCCCceEEeccCccccChhhcccccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG 32 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs 32 (185)
.|.+|+... ..+...+|..|+...|.
T Consensus 18 ~C~vC~~~~----~~~~ll~CD~C~~~~H~ 43 (92)
T 2e6r_A 18 ICQVCSRGD----EDDKLLFCDGCDDNYHI 43 (92)
T ss_dssp CCSSSCCSG----GGGGCEECTTTCCEECS
T ss_pred CCccCCCcC----CCCCEEEcCCCCchhcc
Confidence 577777321 12345677788887774
No 38
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.98 E-value=21 Score=23.59 Aligned_cols=59 Identities=14% Similarity=0.145 Sum_probs=35.1
Q ss_pred EEeccCc----cccChhhccccccCCcCCC-----CceeeeecccccCCC-CCcccCCCCCCcccccccccc
Q 029923 13 MFCESDQ----ASLCWDCDAKVHGANFLVA-----NHSRTLLCHVCQSLT-PWNGSGPKLGPTISVCNVCVG 74 (185)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La~-----rH~RvpLC~~C~~~~-A~~~sg~C~~daasLC~sCd~ 74 (185)
+||..|- +..|..|...|..+..++. .|..-..|..|..+- ...+ -..+...+|..|..
T Consensus 4 ~yC~~cy~~~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~---~~~~~~~yC~~cy~ 72 (82)
T 1x63_A 4 GSSGKCTTREDSPKCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSF---FPKGEDFYCVTCHE 72 (82)
T ss_dssp CCCCCCCSCCCSCBCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCE---EEETTEEEEHHHHH
T ss_pred cCchhHHccccCCcCccCCcccccCceEEEECccccccccCchhhCCCccCCCcc---EeeCCEEECHHHHH
Confidence 5666662 5689999999985443222 465556777787532 1111 13456677877753
No 39
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=22.44 E-value=28 Score=25.28 Aligned_cols=9 Identities=33% Similarity=0.427 Sum_probs=4.2
Q ss_pred ccceeeeec
Q 029923 158 ESQMSFSLK 166 (185)
Q Consensus 158 ~~~~~~~~~ 166 (185)
+++--+.||
T Consensus 48 KnKWKc~LK 56 (79)
T 1nh2_C 48 KARWKCSLK 56 (79)
T ss_dssp TTEEEEEEE
T ss_pred cceEEEEEe
Confidence 344444444
No 40
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=22.04 E-value=46 Score=25.80 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCCCCCC-CCceEEeccCccccChhhccccccC
Q 029923 2 KKCELCG-SPAKMFCESDQASLCWDCDAKVHGA 33 (185)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa~VHsA 33 (185)
+.|--|+ ....+-..+=..+||..| ..||..
T Consensus 26 ~~CaDCg~~~P~WaS~n~GvfiC~~C-sgiHR~ 57 (140)
T 2olm_A 26 RKCFDCDQRGPTYVNMTVGSFVCTSC-SGSLRG 57 (140)
T ss_dssp GSCTTTCSSCCCEEETTTTEEECHHH-HHHHTT
T ss_pred CcCCCCCCCCCCceeeccCEEEchhc-cchhcc
Confidence 3688899 566677777789999999 455543
No 41
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=21.65 E-value=51 Score=23.01 Aligned_cols=38 Identities=21% Similarity=0.694 Sum_probs=20.8
Q ss_pred CCCCCCCCceEEeccCccccChhhccccccCCcCCCCceeeeecccccC
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
.|..|+....++|... .|..|...-. -..+++|+.|..
T Consensus 12 ~c~~c~~~~~W~C~~C---~C~vC~~~~d--------~~~ll~CD~C~~ 49 (77)
T 3shb_A 12 SCKHCKDDVNRLCRVC---ACHLCGGRQD--------PDKQLMCDECDM 49 (77)
T ss_dssp SCTTTTTCTTSCCTTT---SBTTTCCCSC--------GGGEEECTTTCC
T ss_pred cccccCCCCCCCCCCC---cCCccCCCCC--------CcceeEeCCCCC
Confidence 4666664455666665 3555543322 134667777663
No 42
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.94 E-value=31 Score=22.62 Aligned_cols=57 Identities=18% Similarity=0.237 Sum_probs=33.5
Q ss_pred EEeccCc----cccChhhccccccCCcCC----CCceeeeecccccCC-CCCcccCCCCCCccccccccc
Q 029923 13 MFCESDQ----ASLCWDCDAKVHGANFLV----ANHSRTLLCHVCQSL-TPWNGSGPKLGPTISVCNVCV 73 (185)
Q Consensus 13 vyC~aD~----A~LC~~CDa~VHsAN~La----~rH~RvpLC~~C~~~-~A~~~sg~C~~daasLC~sCd 73 (185)
+||..|- +..|..|...|.. ..|. ..|..-..|..|..+ ....+ -..+...+|..|.
T Consensus 4 ~yC~~~y~~~~~~~C~~C~~~I~~-~~v~a~~~~~H~~CF~C~~C~~~L~~~~~---~~~~~~~yC~~~y 69 (80)
T 1x3h_A 4 GSSGKDFLAMFSPKCGGCNRPVLE-NYLSAMDTVWHPECFVCGDCFTSFSTGSF---FELDGRPFCELHY 69 (80)
T ss_dssp CCCCCCCCCCCSCBCTTTCCBCCS-SCEEETTEEECTTTCBCSSSCCBSCSSCC---EESSSCEECHHHH
T ss_pred ccchhHHhhhcCCccccCCCeecc-eeEEECCCeEecCcCChhhCCCCCCCCcE---EeECCEEECHHHH
Confidence 5666663 4579999998874 3321 246655677788753 22111 2345667777664
No 43
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=20.78 E-value=49 Score=22.43 Aligned_cols=16 Identities=19% Similarity=0.625 Sum_probs=8.7
Q ss_pred CCCCCCCCceEEeccC
Q 029923 3 KCELCGSPAKMFCESD 18 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD 18 (185)
-|..|...-.++|...
T Consensus 4 ~c~~c~~~~~w~C~~C 19 (70)
T 3asl_A 4 SCKHCKDDVNRLCRVC 19 (70)
T ss_dssp SCTTTTTCTTSCCTTT
T ss_pred ccccccCCCCeECCCC
Confidence 4666664345666544
No 44
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=20.45 E-value=61 Score=22.61 Aligned_cols=45 Identities=20% Similarity=0.569 Sum_probs=32.2
Q ss_pred CCCCCCC-C-C---ceEEeccCccccChhhccccccCCcCCCCceeeeecccccC
Q 029923 2 KKCELCG-S-P---AKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 2 ~~Cd~C~-a-p---A~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
.+|.+|. . - -.-.|.-.....|.+|.-+++.. .-.-+|+|..|+.
T Consensus 10 ~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr-----~~k~~WvC~lC~k 59 (62)
T 2a20_A 10 PTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLR-----SNKVMWVCNLCRK 59 (62)
T ss_dssp CCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESS-----TTCEEEEEHHHHH
T ss_pred chhhhhccceeccCCCccccccCCeeecccCCEeeec-----CCeEEEEehhhhh
Confidence 4788887 2 2 24678888899999999999842 2234688887763
No 45
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=20.35 E-value=1.4e+02 Score=20.84 Aligned_cols=30 Identities=30% Similarity=0.864 Sum_probs=22.8
Q ss_pred CCCCCC-CC---ceEEeccCcc----ccChhhcccccc
Q 029923 3 KCELCG-SP---AKMFCESDQA----SLCWDCDAKVHG 32 (185)
Q Consensus 3 ~Cd~C~-ap---A~vyC~aD~A----~LC~~CDa~VHs 32 (185)
.|+.|+ .| -++.|....- -||..|=...+.
T Consensus 23 ~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~ 60 (82)
T 2fc7_A 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHE 60 (82)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCC
T ss_pred CCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccc
Confidence 699999 44 5689988864 699999776543
Done!