Query 029923
Match_columns 185
No_of_seqs 156 out of 510
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 08:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029923.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029923hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2dida1 g.43.1.1 (A:8-47) Trip 78.5 0.82 5.9E-05 27.1 2.9 29 3-31 3-32 (40)
2 d1frea_ g.43.1.1 (A:) Nuclear 75.9 0.66 4.8E-05 27.5 1.9 28 4-31 3-31 (39)
3 d2csva1 g.43.1.1 (A:8-66) Trip 71.6 1.2 9.1E-05 27.9 2.6 37 3-45 13-49 (59)
4 d2djaa1 g.43.1.1 (A:8-78) Midl 63.9 2.3 0.00017 26.9 2.7 42 3-50 13-56 (71)
5 d2d8ua1 g.43.1.1 (A:8-58) Ubiq 58.2 2.2 0.00016 26.0 1.7 40 2-47 2-43 (51)
6 d1f62a_ g.50.1.2 (A:) Williams 49.8 5.2 0.00038 23.7 2.5 45 3-51 2-49 (51)
7 d2djaa1 g.43.1.1 (A:8-78) Midl 40.8 5.6 0.00041 25.0 1.6 41 35-78 3-44 (71)
8 d1z60a1 g.49.1.2 (A:328-386) T 39.8 5 0.00036 26.2 1.2 32 2-33 16-51 (59)
9 d2d8va1 g.43.1.1 (A:8-61) Zinc 30.4 20 0.0014 22.8 3.0 44 1-45 1-45 (54)
10 d1y0ja1 g.39.1.1 (A:200-238) E 29.4 11 0.00082 22.5 1.5 27 2-28 3-31 (39)
11 d2fc7a1 g.44.1.6 (A:8-76) Zinc 26.0 46 0.0034 21.0 4.3 28 3-30 16-51 (69)
12 d1joca1 g.50.1.1 (A:1348-1411) 25.5 11 0.00077 23.7 0.9 53 18-76 6-62 (64)
13 d2dq5a1 g.43.1.1 (A:168-214) M 25.0 15 0.0011 21.7 1.5 29 3-31 7-37 (47)
14 d1zbdb_ g.50.1.1 (B:) Effector 20.4 28 0.002 24.0 2.5 44 3-51 50-99 (124)
15 d1fp0a1 g.50.1.2 (A:19-88) Nuc 20.2 59 0.0043 20.0 3.9 13 20-32 19-31 (70)
No 1
>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}
Probab=78.49 E-value=0.82 Score=27.10 Aligned_cols=29 Identities=28% Similarity=0.657 Sum_probs=21.8
Q ss_pred CCCCCCCCceEEeccCccccChhhcc-ccc
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDA-KVH 31 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (185)
+|..-+.+=.+||..|...+|..|-. .-|
T Consensus 3 ~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 32 (40)
T d2dida1 3 LCPQHHEALSLFCYEDQEAVCLICAISHTH 32 (40)
T ss_dssp BCTTTCCBCCEEESSSCSEECHHHHTSSTT
T ss_pred cchhhCccceEEcccCCcEeeccCcCCCCc
Confidence 34444456779999999999999964 355
No 2
>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=75.93 E-value=0.66 Score=27.45 Aligned_cols=28 Identities=25% Similarity=0.577 Sum_probs=21.1
Q ss_pred CCCCCCCceEEeccCccccChhhcc-ccc
Q 029923 4 CELCGSPAKMFCESDQASLCWDCDA-KVH 31 (185)
Q Consensus 4 Cd~C~apA~vyC~aD~A~LC~~CDa-~VH 31 (185)
|..-+.+-.|||..|...+|..|-. .-|
T Consensus 3 C~~H~e~l~lfC~~d~~~iC~~C~~~~~H 31 (39)
T d1frea_ 3 CSEHDERLKLYCKDDGTLSCVICRDSLKH 31 (39)
T ss_dssp CCSSCSSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred CcccCcceeEEcccCCcEeeccCcCCCCc
Confidence 4444457789999999999999954 345
No 3
>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}
Probab=71.58 E-value=1.2 Score=27.92 Aligned_cols=37 Identities=35% Similarity=0.835 Sum_probs=27.3
Q ss_pred CCCCCCCCceEEeccCccccChhhccccccCCcCCCCceeeee
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLL 45 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpL 45 (185)
+|..-+.+-.|||..|...+|..|-..-| +.|.-++|
T Consensus 13 ~C~~H~e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l 49 (59)
T d2csva1 13 KCPVHGKTMELFCQTDQTCICYLCMFQEH------KNHSTVTV 49 (59)
T ss_dssp BCTTTCCBCCEEESSSCCEECHHHHHTTT------SSSCEEEH
T ss_pred chhhhCCccceECCCCCceECcccCcccC------CCCCeeCH
Confidence 45555567789999999999999966656 34665554
No 4
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=63.86 E-value=2.3 Score=26.93 Aligned_cols=42 Identities=24% Similarity=0.424 Sum_probs=30.1
Q ss_pred CCCCCC-CCceEEeccCccccChhhccc-cccCCcCCCCceeeeeccccc
Q 029923 3 KCELCG-SPAKMFCESDQASLCWDCDAK-VHGANFLVANHSRTLLCHVCQ 50 (185)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa~-VHsAN~La~rH~RvpLC~~C~ 50 (185)
.|..-. .+..+||..+...+|..|-.. .| +.|.-.+|=...+
T Consensus 13 ~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a~~ 56 (71)
T d2djaa1 13 TCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDRFE 56 (71)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSSCC
T ss_pred cCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHHHH
Confidence 466664 678999999999999999643 55 2466666655444
No 5
>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.18 E-value=2.2 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCCCCCC-CCceEEeccCccccChhhcc-ccccCCcCCCCceeeeecc
Q 029923 2 KKCELCG-SPAKMFCESDQASLCWDCDA-KVHGANFLVANHSRTLLCH 47 (185)
Q Consensus 2 ~~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VHsAN~La~rH~RvpLC~ 47 (185)
|+|..-. .+-.+||..+...+|..|-. ..| +.|.=.+|=.
T Consensus 2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~~ 43 (51)
T d2d8ua1 2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQS 43 (51)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTT
T ss_pred CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHHH
Confidence 4566665 68899999999999999954 355 2355555433
No 6
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.77 E-value=5.2 Score=23.67 Aligned_cols=45 Identities=24% Similarity=0.581 Sum_probs=26.0
Q ss_pred CCCCCCCCceEEeccCccccChhhcccccc--CCcCCCC-ceeeeecccccC
Q 029923 3 KCELCGSPAKMFCESDQASLCWDCDAKVHG--ANFLVAN-HSRTLLCHVCQS 51 (185)
Q Consensus 3 ~Cd~C~apA~vyC~aD~A~LC~~CDa~VHs--AN~La~r-H~RvpLC~~C~~ 51 (185)
+|.+|+... ..+...+|..|+...|. .++.+.+ =...|+|..|+.
T Consensus 2 ~C~vC~~~~----~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 2 RCKVCRKKG----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCcCcCCCC----CCCCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence 577777322 23556788999988885 3332222 123566776653
No 7
>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.81 E-value=5.6 Score=24.98 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=27.2
Q ss_pred cCCCCceeeeecccccCCCCCcccCCCCCCccccccccccC-CCC
Q 029923 35 FLVANHSRTLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGN-GSG 78 (185)
Q Consensus 35 ~La~rH~RvpLC~~C~~~~A~~~sg~C~~daasLC~sCd~~-~h~ 78 (185)
++...+.|...|.. ++...+...|..+...+|..|... .|.
T Consensus 3 P~~~~~~r~~~C~~---H~~e~l~~fC~~C~~~iC~~C~~~~~Hk 44 (71)
T d2djaa1 3 PVPDTHLRGITCLD---HENEKVNMYCVSDDQLICALCKLVGRHR 44 (71)
T ss_dssp CCCCCCSSCCCCSS---CSSSCCCEEETTTTEEECHHHHHTSTTT
T ss_pred CCCccccCCCcCcc---cCCccceeEcCCCCceeccccccCCCCC
Confidence 44556777776654 433333345999999999999654 564
No 8
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=39.85 E-value=5 Score=26.16 Aligned_cols=32 Identities=31% Similarity=0.620 Sum_probs=25.0
Q ss_pred CCCCCCC---C-CceEEeccCccccChhhccccccC
Q 029923 2 KKCELCG---S-PAKMFCESDQASLCWDCDAKVHGA 33 (185)
Q Consensus 2 ~~Cd~C~---a-pA~vyC~aD~A~LC~~CDa~VHsA 33 (185)
+.|-.|+ . ..++.|....-.+|..||.-||..
T Consensus 16 ~~C~gC~~~l~~~~~y~C~~C~~~FC~dCD~fiHe~ 51 (59)
T d1z60a1 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDS 51 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTT
T ss_pred CCccCCCCcCCCCceEECcCCCCccccccchhhhhh
Confidence 3577787 2 335669999999999999999954
No 9
>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.42 E-value=20 Score=22.84 Aligned_cols=44 Identities=23% Similarity=0.475 Sum_probs=35.9
Q ss_pred CCCCCCCCCCceEEeccCc-cccChhhccccccCCcCCCCceeeee
Q 029923 1 MKKCELCGSPAKMFCESDQ-ASLCWDCDAKVHGANFLVANHSRTLL 45 (185)
Q Consensus 1 m~~Cd~C~apA~vyC~aD~-A~LC~~CDa~VHsAN~La~rH~RvpL 45 (185)
+|.|-+|..-|+|-|.... -..|..|=+..| -++=.+.|+-++.
T Consensus 1 lPWC~ICneDA~lrC~gCdgdLyC~rC~rE~H-dd~e~~~H~~~~y 45 (54)
T d2d8va1 1 LPWCCICNEDATLRCAGCDGDLYCARCFREGH-DNFDLKEHQTSPY 45 (54)
T ss_dssp CSSCTTTCSCCCEEETTTTSEEECSSHHHHHT-TTSSTTTCCEECC
T ss_pred CCEeEEecCCCceEecCCCCceehHHHHHHhc-cccccccceeccc
Confidence 4789999999999999875 466999999999 4566778887764
No 10
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.42 E-value=11 Score=22.50 Aligned_cols=27 Identities=22% Similarity=0.529 Sum_probs=17.3
Q ss_pred CCCCCCC-C-CceEEeccCccccChhhcc
Q 029923 2 KKCELCG-S-PAKMFCESDQASLCWDCDA 28 (185)
Q Consensus 2 ~~Cd~C~-a-pA~vyC~aD~A~LC~~CDa 28 (185)
+.|..|+ . ...|.=-.+...||.+|..
T Consensus 3 r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl 31 (39)
T d1y0ja1 3 RECVNCGATATPLWRRDRTGHYLCNACGL 31 (39)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECSSHHH
T ss_pred CCCCCCCCCCCcccccCCCCCEeeHHhHH
Confidence 5788888 3 3334433444678988874
No 11
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.03 E-value=46 Score=21.01 Aligned_cols=28 Identities=29% Similarity=0.851 Sum_probs=21.4
Q ss_pred CCCCCC-CC---ceEEeccC----ccccChhhcccc
Q 029923 3 KCELCG-SP---AKMFCESD----QASLCWDCDAKV 30 (185)
Q Consensus 3 ~Cd~C~-ap---A~vyC~aD----~A~LC~~CDa~V 30 (185)
.|+.|+ .| .++.|... .--||..|=...
T Consensus 16 ~Cd~C~~~pi~G~R~~C~~Cp~~~d~DLC~~C~~~~ 51 (69)
T d2fc7a1 16 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCL 51 (69)
T ss_dssp CCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCC
T ss_pred EcCCCCCcCcCCcccCCCCCCCCCCccchHHhhcCc
Confidence 699999 54 67899877 578999994433
No 12
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.50 E-value=11 Score=23.70 Aligned_cols=53 Identities=19% Similarity=0.543 Sum_probs=28.5
Q ss_pred CccccChhhccccccCCcCCCCcee----eeecccccCCCCCcccCCCCCCccccccccccCC
Q 029923 18 DQASLCWDCDAKVHGANFLVANHSR----TLLCHVCQSLTPWNGSGPKLGPTISVCNVCVGNG 76 (185)
Q Consensus 18 D~A~LC~~CDa~VHsAN~La~rH~R----vpLC~~C~~~~A~~~sg~C~~daasLC~sCd~~~ 76 (185)
+.+..|..|.++.. .+.+||.. ..+|..|......+ +-....+-+|..|...+
T Consensus 6 ~~~~~C~~C~~~F~---~~~rrHHCR~CG~v~C~~Cs~~~~~~---~~~~~~~RVC~~C~~~l 62 (64)
T d1joca1 6 NEVQNCMACGKGFS---VTVRRHHCRQCGNIFCAECSAKNALT---PSSKKPVRVCDACFNDL 62 (64)
T ss_dssp GGCCBCTTTCCBCC---SSSCCEECTTTCCEECGGGSCEEECC---TTCSSCEEECHHHHHHT
T ss_pred ccCCcCcCcCCccc---CCccccchhhhCCeecccccCCceec---CCCCCccEehHHHHHHh
Confidence 35677888887764 33455543 24677776432221 11223355787776544
No 13
>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.97 E-value=15 Score=21.68 Aligned_cols=29 Identities=24% Similarity=0.542 Sum_probs=21.4
Q ss_pred CCCCCC-CCceEEeccCccccChhhcc-ccc
Q 029923 3 KCELCG-SPAKMFCESDQASLCWDCDA-KVH 31 (185)
Q Consensus 3 ~Cd~C~-apA~vyC~aD~A~LC~~CDa-~VH 31 (185)
.|..-. .+-.+||..+...+|..|-. ..|
T Consensus 7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H 37 (47)
T d2dq5a1 7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRH 37 (47)
T ss_dssp BCSSCTTSBEEEEETTTTEEEEHHHHHTSST
T ss_pred cchhhCCCcceEEcCCCCccCCccCcCcCCc
Confidence 344443 56789999999999999943 345
No 14
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.42 E-value=28 Score=24.00 Aligned_cols=44 Identities=27% Similarity=0.777 Sum_probs=28.9
Q ss_pred CCCCCC-C-----CceEEeccCccccChhhccccccCCcCCCCceeeeecccccC
Q 029923 3 KCELCG-S-----PAKMFCESDQASLCWDCDAKVHGANFLVANHSRTLLCHVCQS 51 (185)
Q Consensus 3 ~Cd~C~-a-----pA~vyC~aD~A~LC~~CDa~VHsAN~La~rH~RvpLC~~C~~ 51 (185)
.|..|+ . .-..+|+.....+|..|...+... +=..+++|.+|..
T Consensus 50 ~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~-----~~~~~w~C~~C~k 99 (124)
T d1zbdb_ 50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNN-----RPHPVWLCKICLE 99 (124)
T ss_dssp BCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCS-----SSSCCEEEHHHHH
T ss_pred cCcccCCcccCCCCCCCcCccCCcccccCCCCCccCC-----CCCCCEECccCcc
Confidence 588886 2 234678888889999887543311 1235688888873
No 15
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.23 E-value=59 Score=20.05 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=8.4
Q ss_pred cccChhhcccccc
Q 029923 20 ASLCWDCDAKVHG 32 (185)
Q Consensus 20 A~LC~~CDa~VHs 32 (185)
..+|..|+...|.
T Consensus 19 ll~Cd~C~~~~H~ 31 (70)
T d1fp0a1 19 LVMCNQCEFCFHL 31 (70)
T ss_dssp CEECTTSSCEECT
T ss_pred EEECCCCChhhcc
Confidence 4566667777773
Done!