BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029924
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SPV|A Chain A, Crystal Structure Of The Putative Phosphatase Of
Escherichia Coli, Northeast Structural Genomoics Target
Er58
Length = 184
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 93/174 (53%), Gaps = 15/174 (8%)
Query: 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGG-----FTAAAGPDLQKACYQIPEAQ 67
KT + + +GDI++ VD IV+ N L GG AAGP L AC ++ + Q
Sbjct: 2 KTRIHVVQGDITKLAVD----VIVNAANPSLXGGGGVDGAIHRAAGPALLDACLKVRQQQ 57
Query: 68 PRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPED-ILRSAYKNCLSVGKANNIQY 126
CP G A IT LP V+HTVGPV+ ED +L+ AY N L + AN+
Sbjct: 58 GD--CPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTS 115
Query: 127 IAFPAISCGVSQYPPDEAATIAISTVKEFANDF---KEVHFILFTDDIYNVWLK 177
+AFPAIS GV YP AA IA+ TV EF ++V+F+ + ++ +++ +
Sbjct: 116 VAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYER 169
>pdb|2X47|A Chain A, Crystal Structure Of Human Macrod1
Length = 235
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 20/158 (12%)
Query: 33 DAIVSPTNEILLLGG-----FTAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 87
DAIV+ N LL GG AAGP L C + C G+A+IT G++LP
Sbjct: 77 DAIVNAANSSLLGGGGVDGCIHRAAGPLLTDECRTLQS------CKTGKAKITGGYRLPA 130
Query: 88 SHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAA 145
+VIHTVGP+ + LRS Y + L + + ++ +AFP IS GV YP + AA
Sbjct: 131 KYVIHTVGPIAYGEPSASQAAELRSCYLSSLDLLLEHRLRSVAFPCISTGVFGYPCEAAA 190
Query: 146 TIAISTVKEFANDFKE-------VHFILFTDDIYNVWL 176
I ++T++E+ K+ F+ +DIY L
Sbjct: 191 EIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRL 228
>pdb|3Q6Z|A Chain A, Human Parp14 (Artd8)-Macro Domain 1 In Complex With
Adenosine-5- Diphosphoribose
Length = 214
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 57/182 (31%), Positives = 90/182 (49%), Gaps = 19/182 (10%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEIL-----LLGGFTAAAGPDLQKACYQIPEAQPRV 70
L + +GD++R VD +V+ +NE L L + AAGP+LQ C QI + + R+
Sbjct: 39 LIVQQGDLARLPVD----VVVNASNEDLKHYGGLAAALSKAAGPELQADCDQIVKREGRL 94
Query: 71 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDI--LRSAYKNCLSVGKANNIQYIA 128
PG A I+ KLP HVIH VGP ++ + P + LR A + L + + + IA
Sbjct: 95 L--PGNATISKAGKLPYHHVIHAVGPRWSGYEAPRCVYLLRRAVQLSLCLAEKYKYRSIA 152
Query: 129 FPAISCGVSQYPPDEAATIAISTVKE---FAND---FKEVHFILFTDDIYNVWLKKAKEL 182
PAIS GV +P +S +KE F D KE++ + ++ + + K +
Sbjct: 153 IPAISSGVFGFPLGRCVETIVSAIKENFQFKKDGHCLKEIYLVDVSEKTVEAFAEAVKTV 212
Query: 183 LQ 184
+
Sbjct: 213 FK 214
>pdb|1YD9|A Chain A, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|B Chain B, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|C Chain C, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1.
pdb|1YD9|D Chain D, 1.6a Crystal Structure Of The Non-Histone Domain Of The
Histone Variant Macroh2a1.1
Length = 193
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 19/189 (10%)
Query: 5 VQTLSFSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQK-ACYQI 63
+ T S L++ + DI+ +D SDA+V PTN +GG G L+K +
Sbjct: 10 LSTKSLFLGQKLQVVQADIA--SID--SDAVVHPTNTDFYIGG---EVGSTLEKKGGKEF 62
Query: 64 PEAQPRVRCPPG-----EARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSV 118
EA +R G A ++ G LP VIH PV+ E++L KNCL++
Sbjct: 63 VEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGSD-KCEELLEKTVKNCLAL 121
Query: 119 GKANNIQYIAFPAISCGVSQYPPDEAATI---AIST--VKEFANDFKEVHFILFTDDIYN 173
++ IAFP+I G + +P AA + AIS+ V ++ K V+F+LF +
Sbjct: 122 ADDRKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIG 181
Query: 174 VWLKKAKEL 182
+++++ +L
Sbjct: 182 IYVQEMAKL 190
>pdb|1ZR3|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|C Chain C, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|1ZR3|D Chain D, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form B)
pdb|2FXK|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|2FXK|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.1 (Form A)
pdb|3IID|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form A)
pdb|3IIF|A Chain A, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|B Chain B, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
pdb|3IIF|C Chain C, Crystal Structure Of The Macro Domain Of Human Histone
Macroh2a1.1 In Complex With Adp-Ribose (Form B)
Length = 211
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 90/179 (50%), Gaps = 21/179 (11%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQK-ACYQIPEAQPRVRCPP 74
L++ + DI+ +D SDA+V PTN +GG G L+K + EA +R
Sbjct: 39 LQVVQADIA--SID--SDAVVHPTNTDFYIGG---EVGNTLEKKGGKEFVEAVLELRKKN 91
Query: 75 G-----EARITPGFKLPVSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIA 128
G A ++ G LP VIH PV+ C E++L KNCL++ ++ IA
Sbjct: 92 GPLEVAGAAVSAGHGLPAKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIA 149
Query: 129 FPAISCGVSQYPPDEAATI---AIST--VKEFANDFKEVHFILFTDDIYNVWLKKAKEL 182
FP+I G + +P AA + AIS+ V ++ K V+F+LF + +++++ +L
Sbjct: 150 FPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKL 208
>pdb|2DX6|A Chain A, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
pdb|2DX6|B Chain B, Crystal Structure Of Conserved Hypothetical Protein,
Ttha0132 From Thermus Thermophilus Hb8
Length = 159
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 75/160 (46%), Gaps = 18/160 (11%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRV 70
+++ +GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++
Sbjct: 4 IRVVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KI 55
Query: 71 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130
R GEA +T LPV +VIH V + +R A K+ L ++ +AFP
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFP 111
Query: 131 AISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDD 170
+ GV P + A + + +K+ A D EV + ++
Sbjct: 112 LLGTGVGGLPVEAVARVXLEEIKK-APDTLEVTLYGYREE 150
>pdb|1ZR5|A Chain A, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
pdb|1ZR5|B Chain B, Crystal Structure Of The Macro-Domain Of Human Core
Histone Variant Macroh2a1.2
Length = 214
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 17/162 (10%)
Query: 33 DAIVSPTNEILLLGGFTAAAGPDLQK-ACYQIPEAQPRVRCPPG-----EARITPGFKLP 86
+AI++PTN + L G L+K + EA +R G A ++ G LP
Sbjct: 55 EAIINPTNADIDL---KDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLP 111
Query: 87 VSHVIHTVGPVFNF-HCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAA 145
VIH PV+ C E++L KNCL++ ++ IAFP+I G + +P AA
Sbjct: 112 AKFVIHCNSPVWGADKC--EELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAA 169
Query: 146 TI---AIST--VKEFANDFKEVHFILFTDDIYNVWLKKAKEL 182
+ AIS+ V ++ K V+F+LF + +++++ +L
Sbjct: 170 QLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKL 211
>pdb|3Q71|A Chain A, Human Parp14 (Artd8) - Macro Domain 2 In Complex With
Adenosine-5- Diphosphoribose
Length = 221
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 9/129 (6%)
Query: 52 AGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVF-NFHCNPEDILRS 110
AGP+LQ+ + + V G T + L +V+H V P + N + I+
Sbjct: 79 AGPELQEELDTVGQG---VAVSMGTVLKTSSWNLDCRYVLHVVAPEWRNGSTSSLKIMED 135
Query: 111 AYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND-----FKEVHFI 165
+ C+ + ++ +++ IAFPAI G +P + A + IS V +F++ +EVHF+
Sbjct: 136 IIRECMEITESLSLKSIAFPAIGTGNLGFPKNIFAELIISEVFKFSSKNQLKTLQEVHFL 195
Query: 166 LFTDDIYNV 174
L D N+
Sbjct: 196 LHPSDHENI 204
>pdb|1VHU|A Chain A, Crystal Structure Of A Putative Phosphoesterase
Length = 211
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 88/189 (46%), Gaps = 25/189 (13%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACY-------QIPEAQ 67
+LK+++GDI+++ + AIV+ N+ L GG A A + KAC +I +
Sbjct: 22 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYA---IAKACAGDAGLYTEISKKA 74
Query: 68 PRVR-----CPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLS 117
R + GE +TP L + +V HTVGP+ + + E + L A+ L
Sbjct: 75 XREQFGRDYIDHGEVVVTPAXNLEERGIKYVFHTVGPICSGXWSEELKEKLYKAFLGPLE 134
Query: 118 VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWL 176
+ ++ IAFPA+S G+ ++ + VK F + KEV +++ V L
Sbjct: 135 KAEEXGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVAL 194
Query: 177 KKAKELLQG 185
K + L+G
Sbjct: 195 KVFERSLEG 203
>pdb|1HJZ|A Chain A, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
pdb|1HJZ|B Chain B, Crystal Structure Of Af1521 Protein Containing A Macroh2a
Domain
Length = 192
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACY------------Q 62
+LK+++GDI+++ + AIV+ N+ L GG A A + KAC
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYA---IAKACAGDAGLYTEISKKA 65
Query: 63 IPEAQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLS 117
+ E R GE +TP L + +V HTVGP+ + + E + L A+ L
Sbjct: 66 MREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLE 125
Query: 118 VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWL 176
+ ++ IAFPA+S G+ ++ + VK F + KEV +++ V L
Sbjct: 126 KAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVAL 185
Query: 177 K 177
K
Sbjct: 186 K 186
>pdb|2BFR|A Chain A, The Macro Domain Is An Adp-Ribose Binding Module
pdb|2BFQ|A Chain A, Macro Domains Are Adp-Ribose Binding Molecules
Length = 192
Score = 53.1 bits (126), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 25/181 (13%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACY------------Q 62
+LK+++GDI+++ + AIV+ N+ L GG A A + KAC
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYA---IAKACAGDAGLYTEISKKA 65
Query: 63 IPEAQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLS 117
+ E R GE +TP L + +V HTVGP+ + + E + L A+ L
Sbjct: 66 MREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLE 125
Query: 118 VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF-ANDFKEVHFILFTDDIYNVWL 176
+ ++ IAFPA+S G+ ++ + VK F + KEV +++ V L
Sbjct: 126 KAEEMGVESIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVAL 185
Query: 177 K 177
K
Sbjct: 186 K 186
>pdb|4GVW|A Chain A, Three-Dimensional Structure Of The De Novo Designed Serine
Hydrolase 2bfq_3, Northeast Structural Genomics
Consortium (Nesg) Target Or248
Length = 199
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 28/170 (16%)
Query: 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKAC------------YQ 62
+LK+++GDI+++ + AIV+ N+ L GG A A + KAC
Sbjct: 13 TLKLAQGDITQY----PAKAIVNAANKRLEHGGGVAYA---IAKACAGDAGLYTEISKKA 65
Query: 63 IPEAQPRVRCPPGEARITPGFKLP---VSHVIHTVGPVFNFHCNPE--DILRSAYKNCLS 117
+ E R GE +TP L + +V HTVGP+ + + E + L A+ L
Sbjct: 66 MREQFGRDYIDHGEVVVTPAMNLEERGIKYVFHTVGPICSGMWSEELKEKLYKAFLGPLE 125
Query: 118 VGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF----ANDFKEVH 163
+ ++ IAFPA+S G+ ++ ++ VK F + EVH
Sbjct: 126 KAEEMGVESIAFPAVSAGIYGCDAEKVVETSLEAVKNFKGSAVKEVAEVH 175
>pdb|3V45|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase
Osh55, Northeast Structural Genomics Consortium Target
Or130
Length = 167
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRVRCPP 74
+GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KIRV-- 57
Query: 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 134
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 135 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 169
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|4ESS|A Chain A, Crystal Structure Of E6dL155R VARIANT OF DE NOVO DESIGNED
SERINE Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or187
Length = 167
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRVRCPP 74
+GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KIRV-- 57
Query: 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 134
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 135 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 169
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|4ETJ|A Chain A, Crystal Structure Of E6h Variant Of De Novo Designed
Serine Hydrolase Osh55, Northeast Structural Genomics
Consortium (Nesg) Target Or185
Length = 167
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 18/155 (11%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRVRCPP 74
+GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KIRV-- 57
Query: 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 134
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 135 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 169
V P + + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVLRVMLEEIKK-APDTLEVTGVHGTE 149
>pdb|4GVV|A Chain A, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|B Chain B, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|C Chain C, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
pdb|4GVV|D Chain D, Crystal Structure Of De Novo Design Serine Hydrolase
Osh55.27, Northeast Structural Genomics Consortium
(Nesg) Target Or246
Length = 167
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 18/155 (11%)
Query: 20 KGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRVRCPP 74
+GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++R
Sbjct: 8 QGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KIRV-- 57
Query: 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC 134
GEA +T LPV +VIH V + +R A K+ L ++ +AF A+
Sbjct: 58 GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGA 115
Query: 135 GVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 169
V P + + +K+ A D EV + T+
Sbjct: 116 WVGGLPAEAVFRVXFEEIKK-APDTLEVTGVHGTE 149
>pdb|4ETK|A Chain A, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
pdb|4ETK|B Chain B, Crystal Structure Of E6aL130DA155H VARIANT OF DE NOVO
DESIGNED Serine Hydrolase, Northeast Structural Genomics
Consortium (Nesg) Target Or186
Length = 167
Score = 49.7 bits (117), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAA-----GPDLQKACYQIPEAQPRV 70
++ +GDI+ + DAIV+ N L LG A A GP +Q+ C +I ++
Sbjct: 4 IRAVQGDITEF----QGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIG----KI 55
Query: 71 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130
R GEA +T LPV +VIH V + +R A K+ L ++ +AF
Sbjct: 56 RV--GEAAVTGAGNLPVRYVIHA--AVLGDEPASLETVRKATKSALEKAVELGLKTVAFT 111
Query: 131 AISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTD 169
A+ V P + + +K+ A D EV + T+
Sbjct: 112 ALGAWVGGLPAEAVLRVXDEEIKK-APDTLEVTGVHGTE 149
>pdb|4ABK|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3 In Complex
With Adenosine-5-Diphosphoribose
pdb|4ABL|A Chain A, Human Parp14 (Artd8, Bal2) - Macro Domain 3
Length = 183
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPT-NEILLLGGFTAA----AGPDLQKACYQIPEAQPRV 70
+++ GDI++ +D IV+ T N L G + A AG ++++ C Q +AQ R
Sbjct: 24 FQVASGDITK----EEADVIVNSTSNSFNLKAGVSKAILECAGQNVERECSQ--QAQQR- 76
Query: 71 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130
+ IT G L ++IH +G + ++S+ + L + N I P
Sbjct: 77 ---KNDYIITGGGFLRCKNIIHVIGG---------NDVKSSVSSVLQECEKKNYSSICLP 124
Query: 131 AISCGVSQYPPDEAATIAISTVKEF-----ANDFKEVHFILFTDDIYNVWLKKAKE 181
AI G ++ PD+ A I +++F A K+V ++F + +V+ K+
Sbjct: 125 AIGTGNAKQHPDKVAEAIIDAIEDFVQKGSAQSVKKVKVVIFLPQVLDVFYANMKK 180
>pdb|2XD7|A Chain A, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|B Chain B, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|C Chain C, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
pdb|2XD7|D Chain D, Crystal Structure Of The Macro Domain Of Human Core
Histone H2a
Length = 193
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 14/177 (7%)
Query: 16 LKISKGDISRWCVDRSSDAIVSPTN-EILL---LG-GFTAAAGPDLQKACYQIPEAQPRV 70
L +++ DIS R + IV PT EI L +G A G + + ++ ++Q +
Sbjct: 21 LSLTQSDISHIGSMRV-EGIVHPTTAEIDLKEDIGKALEKAGGKEFLETVKELRKSQGPL 79
Query: 71 RCPPGEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130
EA ++ L VIH P + E+ L KNCLS + ++ +AFP
Sbjct: 80 EV--AEAAVSQSSGLAAKFVIHCHIPQWGSD-KCEEQLEETIKNCLSAAEDKKLKSVAFP 136
Query: 131 AISCGVSQYPPDEAATIAISTVKEFAND-----FKEVHFILFTDDIYNVWLKKAKEL 182
G + +P AA + + + +D K V+F+LF + +++++ +L
Sbjct: 137 PFPSGRNCFPKQTAAQVTLKAISAHFDDSSASSLKNVYFLLFDSESIGIYVQEMAKL 193
>pdb|3GQE|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQE|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus
pdb|3GQO|A Chain A, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|B Chain B, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|C Chain C, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
pdb|3GQO|D Chain D, Crystal Structure Of Macro Domain Of Venezuelan Equine
Encephalitis Virus In Complex With Adp-Ribose
Length = 168
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 75 GEARITPGFKLPVSHVIHTVGPVFN--FHCNPEDILRSAYKNCLSVGKANNIQYIAFPAI 132
G+AR+ G H+IH VGP FN + L AY++ + NN + +A P +
Sbjct: 55 GKARLVKG---AAKHIIHAVGPNFNKVSEVEGDKQLAEAYESIAKIVNDNNYKSVAIPLL 111
Query: 133 SCGV 136
S G+
Sbjct: 112 STGI 115
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Query: 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPE--DILRSAYKNCLSVGKANNIQYIAFPAI 132
G AR+T VIH VGP F H E +L++AY + +NI+ +A P +
Sbjct: 395 GTARMTVCLG---KKVIHAVGPDFRKHPEAEALKLLQNAYHAVADLVNEHNIKSVAIPLL 451
Query: 133 SCGV 136
S G+
Sbjct: 452 STGI 455
>pdb|2VRI|A Chain A, Structure Of The Nsp3 X-Domain Of Human Coronavirus Nl63
Length = 174
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 11/129 (8%)
Query: 10 FSTKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGFTAAAGPDLQKACYQIPEAQPR 69
F+ ++K GDIS S D +V+ NE LL GG A A L + Q+
Sbjct: 13 FAVYKNVKFYLGDISHLVNCVSFDFVVNAANENLLHGGGVARAIDILTEG--QLQSLSKD 70
Query: 70 VRCPPGEARITPGFKLPVS--HVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYI 127
G ++ G L +V + VGP H +L AY + L N I +
Sbjct: 71 YISSNGPLKVGAGVMLECEKFNVFNVVGPRTGKH--EHSLLVEAYNSILF---ENGIPLM 125
Query: 128 AFPAISCGV 136
P +SCG+
Sbjct: 126 --PLLSCGI 132
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 47 GFTAAAGPDLQKAC-YQIPEAQPRVRCPPGEARITPG---FKLPVSHVIHTV----GPVF 98
GFT + L K C + EA+ R PG A I PG +L S + + GP
Sbjct: 194 GFTRSFAERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPV 253
Query: 99 NFHCNPEDIL-----RSAYKNCLSV---GKANNIQYIAFPAISCGVSQYPPDEAATIAIS 150
N H D+L + A +N + V G N+ G +EA+ +
Sbjct: 254 NRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAMYQAGAWTIAQNEASCVVFG 313
Query: 151 TVKEFAN 157
+E N
Sbjct: 314 MPREAIN 320
>pdb|1CHD|A Chain A, Cheb Methylesterase Domain
Length = 203
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 48/127 (37%), Gaps = 16/127 (12%)
Query: 47 GFTAAAGPDLQKACY-QIPEAQPRVRCPPGEARITPG---FKLPVSHVIHTV----GPVF 98
GFT + L K C + EA+ R PG A I PG +L S + + GP
Sbjct: 48 GFTRSFAERLNKLCQISVKEAEDGERVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPV 107
Query: 99 NFHCNPEDIL-----RSAYKNCLSV---GKANNIQYIAFPAISCGVSQYPPDEAATIAIS 150
N H D+L + A +N + V G N+ G +EA+ +
Sbjct: 108 NRHRPSVDVLFHSVAKHAGRNAVGVILTGMGNDGAAGMLAMYQAGAWTIAQNEASCVVFG 167
Query: 151 TVKEFAN 157
+E N
Sbjct: 168 MPREAIN 174
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,665,293
Number of Sequences: 62578
Number of extensions: 224669
Number of successful extensions: 424
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 26
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)