Query 029924
Match_columns 185
No_of_seqs 126 out of 1079
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:48:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02904 Macro_H2A_like Macro d 100.0 1.1E-47 2.4E-52 297.1 18.6 163 7-176 11-185 (186)
2 cd02907 Macro_Af1521_BAL_like 100.0 9.9E-45 2.1E-49 280.0 19.4 164 13-182 1-175 (175)
3 cd02908 Macro_Appr_pase_like M 100.0 4.2E-44 9.1E-49 274.1 19.3 155 15-179 1-164 (165)
4 PRK00431 RNase III inhibitor; 100.0 8.8E-44 1.9E-48 275.2 19.9 167 12-184 1-176 (177)
5 PRK04143 hypothetical protein; 100.0 6.2E-44 1.4E-48 289.4 19.6 166 12-182 81-262 (264)
6 cd02905 Macro_GDAP2_like Macro 100.0 3E-43 6.5E-48 262.2 15.9 132 15-156 2-140 (140)
7 COG2110 Predicted phosphatase 100.0 3.4E-40 7.4E-45 253.1 17.9 166 14-183 3-176 (179)
8 cd02906 Macro_1 Macro domain, 100.0 5.6E-40 1.2E-44 246.7 14.1 134 15-153 1-147 (147)
9 cd02903 Macro_BAL_like Macro d 100.0 8.1E-39 1.8E-43 238.0 15.7 130 14-155 1-137 (137)
10 cd03330 Macro_2 Macro domain, 100.0 3.3E-34 7.1E-39 212.1 15.6 127 15-152 1-132 (133)
11 KOG2633 Hismacro and SEC14 dom 100.0 2.8E-31 6.1E-36 205.0 13.1 160 5-180 22-194 (200)
12 cd02900 Macro_Appr_pase Macro 100.0 8.6E-31 1.9E-35 203.1 15.5 144 13-156 18-186 (186)
13 smart00506 A1pp Appr-1"-p proc 100.0 1.6E-29 3.5E-34 186.0 14.5 125 16-148 2-133 (133)
14 cd02749 Macro Macro domain, a 100.0 6.1E-29 1.3E-33 186.1 15.1 131 15-152 1-146 (147)
15 PF01661 Macro: Macro domain; 99.9 5.6E-28 1.2E-32 174.1 8.5 111 36-148 1-118 (118)
16 PRK13341 recombination factor 99.9 2.7E-29 5.7E-34 228.6 -2.1 167 12-183 473-706 (725)
17 cd02901 Macro_Poa1p_like Macro 99.9 5.9E-23 1.3E-27 152.9 13.3 128 15-153 1-138 (140)
18 PHA02595 tk.4 hypothetical pro 99.8 1.8E-17 3.9E-22 125.4 15.8 145 15-169 2-153 (154)
19 PF14519 Macro_2: Macro-like d 99.3 4.3E-11 9.3E-16 97.3 10.0 139 14-156 42-214 (280)
20 cd03331 Macro_Poa1p_like_SNF2 98.8 1.6E-07 3.4E-12 70.9 13.1 132 16-151 2-148 (152)
21 TIGR02452 conserved hypothetic 98.1 2.1E-05 4.5E-10 64.5 9.2 87 90-176 164-265 (266)
22 COG4295 Uncharacterized protei 97.5 0.00097 2.1E-08 52.8 9.2 78 105-182 199-281 (285)
23 PF10154 DUF2362: Uncharacteri 97.4 0.0023 5E-08 56.8 11.5 115 70-184 370-503 (510)
24 PHA00684 hypothetical protein 81.2 16 0.00035 26.6 7.8 49 104-152 54-102 (128)
25 PHA03033 hypothetical protein; 78.9 7.8 0.00017 28.2 5.5 74 15-101 2-82 (142)
26 KOG1502 Flavonol reductase/cin 61.2 21 0.00045 30.4 5.2 46 86-131 78-128 (327)
27 PF01073 3Beta_HSD: 3-beta hyd 57.6 33 0.00071 28.1 5.8 45 86-130 66-114 (280)
28 PRK14827 undecaprenyl pyrophos 53.6 1E+02 0.0022 25.8 8.1 39 109-147 97-135 (296)
29 KOG4506 Uncharacterized conser 53.0 19 0.00041 31.3 3.7 65 71-135 416-483 (598)
30 PLN02214 cinnamoyl-CoA reducta 50.9 31 0.00067 28.9 4.8 41 87-130 82-125 (342)
31 PRK14837 undecaprenyl pyrophos 50.4 33 0.00071 27.7 4.6 49 107-156 34-82 (230)
32 CHL00194 ycf39 Ycf39; Provisio 49.6 1.3E+02 0.0028 24.7 8.3 43 87-129 65-107 (317)
33 cd06155 eu_AANH_C_1 A group of 46.6 91 0.002 21.2 6.0 43 142-184 25-74 (101)
34 TIGR00055 uppS undecaprenyl di 45.2 44 0.00096 26.9 4.5 47 109-156 29-75 (226)
35 cd00475 CIS_IPPS Cis (Z)-Isopr 45.1 46 0.001 26.6 4.7 47 109-156 30-76 (221)
36 PLN02657 3,8-divinyl protochlo 44.9 1.5E+02 0.0032 25.5 8.1 45 86-130 136-180 (390)
37 PRK07475 hypothetical protein; 43.0 87 0.0019 25.2 6.1 97 71-171 26-134 (245)
38 COG1088 RfbB dTDP-D-glucose 4, 42.9 2.1E+02 0.0046 24.4 9.0 33 11-43 48-86 (340)
39 PRK14842 undecaprenyl pyrophos 41.1 58 0.0013 26.4 4.7 47 109-156 38-84 (241)
40 PRK14833 undecaprenyl pyrophos 41.0 54 0.0012 26.5 4.5 47 109-156 34-80 (233)
41 PRK14841 undecaprenyl pyrophos 40.1 56 0.0012 26.4 4.5 48 107-155 31-78 (233)
42 PRK14840 undecaprenyl pyrophos 38.5 63 0.0014 26.4 4.5 40 109-148 52-91 (250)
43 PF07993 NAD_binding_4: Male s 37.9 1.2E+02 0.0026 24.0 6.1 37 87-123 88-126 (249)
44 PRK06052 5-methyltetrahydropte 37.6 95 0.0021 26.6 5.6 77 74-154 112-192 (344)
45 PRK14839 undecaprenyl pyrophos 37.5 68 0.0015 26.0 4.5 47 109-156 39-85 (239)
46 PRK14832 undecaprenyl pyrophos 37.4 71 0.0015 26.2 4.7 40 109-148 48-87 (253)
47 PRK14829 undecaprenyl pyrophos 37.2 75 0.0016 25.8 4.8 39 109-147 44-82 (243)
48 PRK14838 undecaprenyl pyrophos 36.6 75 0.0016 25.8 4.7 49 107-156 38-86 (242)
49 PTZ00372 endonuclease 4-like p 36.2 2.5E+02 0.0055 24.7 8.1 56 109-166 217-273 (413)
50 PRK10240 undecaprenyl pyrophos 35.8 84 0.0018 25.3 4.8 47 109-156 23-69 (229)
51 PRK15181 Vi polysaccharide bio 35.7 72 0.0016 26.7 4.7 45 87-131 91-140 (348)
52 PRK14831 undecaprenyl pyrophos 35.3 75 0.0016 25.9 4.5 39 109-147 50-88 (249)
53 PRK14834 undecaprenyl pyrophos 35.2 90 0.002 25.5 5.0 39 109-147 44-82 (249)
54 cd06154 YjgF_YER057c_UK114_lik 35.2 1.4E+02 0.0031 20.9 5.5 51 104-184 42-92 (119)
55 PF13460 NAD_binding_10: NADH( 35.0 60 0.0013 24.0 3.8 36 86-129 60-95 (183)
56 KOG1602 Cis-prenyltransferase 34.5 75 0.0016 26.2 4.3 42 107-148 64-105 (271)
57 PRK14828 undecaprenyl pyrophos 33.9 92 0.002 25.5 4.8 40 109-148 57-96 (256)
58 cd00448 YjgF_YER057c_UK114_fam 33.4 1.5E+02 0.0032 19.7 5.4 24 161-184 57-80 (107)
59 cd06150 YjgF_YER057c_UK114_lik 33.2 1.6E+02 0.0034 20.1 6.0 24 161-184 54-77 (105)
60 PF01042 Ribonuc_L-PSP: Endori 33.0 1.6E+02 0.0035 20.6 5.5 25 160-184 67-91 (121)
61 PRK14835 undecaprenyl pyrophos 32.8 96 0.0021 25.7 4.8 39 109-147 71-109 (275)
62 PTZ00349 dehydrodolichyl dipho 32.7 84 0.0018 26.7 4.5 42 107-148 47-88 (322)
63 COG0648 Nfo Endonuclease IV [D 32.5 2.9E+02 0.0064 23.0 8.0 65 87-157 68-132 (280)
64 TIGR00004 endoribonuclease L-P 32.5 1.6E+02 0.0034 20.7 5.4 24 161-184 73-96 (124)
65 COG2388 Predicted acetyltransf 32.4 73 0.0016 22.2 3.5 41 88-131 40-80 (99)
66 PF01255 Prenyltransf: Putativ 32.4 81 0.0018 25.1 4.2 45 110-155 25-69 (223)
67 PLN02662 cinnamyl-alcohol dehy 32.3 1.5E+02 0.0032 24.0 6.0 44 87-130 77-125 (322)
68 KOG0079 GTP-binding protein H- 31.8 40 0.00087 25.7 2.2 19 1-19 43-62 (198)
69 PF09039 HTH_Tnp_Mu_2: Mu DNA 31.4 35 0.00076 24.1 1.8 25 106-133 49-73 (108)
70 TIGR03234 OH-pyruv-isom hydrox 30.3 2.7E+02 0.0059 21.9 7.1 49 107-156 81-129 (254)
71 PTZ00325 malate dehydrogenase; 29.7 1.7E+02 0.0036 24.8 5.8 44 86-129 76-122 (321)
72 KOG3716 Carnitine O-acyltransf 29.4 1.1E+02 0.0024 28.7 5.0 55 98-152 511-568 (764)
73 PRK11401 putative endoribonucl 29.4 2.1E+02 0.0046 20.3 6.0 24 161-184 73-96 (129)
74 TIGR03610 RutC pyrimidine util 29.3 1.9E+02 0.0041 20.6 5.4 51 104-184 48-98 (127)
75 PRK10810 anti-sigma28 factor F 28.4 74 0.0016 22.2 2.9 26 132-157 71-96 (98)
76 PF15162 DUF4580: Domain of un 27.7 1.4E+02 0.0031 22.6 4.5 57 125-183 40-100 (162)
77 COG1252 Ndh NADH dehydrogenase 27.1 3.7E+02 0.008 23.6 7.7 104 79-182 92-214 (405)
78 PF05185 PRMT5: PRMT5 arginine 27.0 44 0.00096 29.6 2.0 27 13-39 240-266 (448)
79 PRK06199 ornithine cyclodeamin 26.8 2.4E+02 0.0052 24.4 6.5 68 107-183 136-205 (379)
80 PRK14836 undecaprenyl pyrophos 26.1 1.2E+02 0.0027 24.7 4.3 50 105-155 40-89 (253)
81 COG0621 MiaB 2-methylthioadeni 25.6 2.1E+02 0.0046 25.4 5.9 85 79-169 150-237 (437)
82 PRK14830 undecaprenyl pyrophos 25.6 1.5E+02 0.0032 24.2 4.7 44 105-148 48-91 (251)
83 PF12683 DUF3798: Protein of u 24.7 1.4E+02 0.0029 24.9 4.3 94 75-175 119-215 (275)
84 PLN02778 3,5-epimerase/4-reduc 23.6 1.5E+02 0.0032 24.3 4.4 44 86-129 57-108 (298)
85 PF04316 FlgM: Anti-sigma-28 f 23.5 66 0.0014 19.6 1.8 20 132-151 37-56 (57)
86 PLN02986 cinnamyl-alcohol dehy 23.4 2.3E+02 0.005 23.0 5.6 44 87-130 78-126 (322)
87 COG4019 Uncharacterized protei 22.5 2.3E+02 0.0049 20.9 4.6 34 149-182 26-59 (156)
88 PLN02725 GDP-4-keto-6-deoxyman 21.5 1.8E+02 0.0038 23.3 4.5 43 86-129 49-98 (306)
89 PF05028 PARG_cat: Poly (ADP-r 21.2 4.4E+02 0.0096 22.4 7.0 26 15-43 144-170 (340)
90 TIGR01578 MiaB-like-B MiaB-lik 21.1 3.3E+02 0.0072 23.7 6.4 85 76-166 136-220 (420)
91 PRK14338 (dimethylallyl)adenos 20.7 5.9E+02 0.013 22.5 9.2 85 77-167 159-245 (459)
No 1
>cd02904 Macro_H2A_like Macro domain, Macro_H2A_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family are similar to macroH2A, a variant of the major-type core histone H2A, which contains an N-terminal H2A domain and a C-terminal nonhistone macro domain. Histone macroH2A is enriched on the inactive X chromosome of mammalian female cells. It does not bind poly ADP-r
Probab=100.00 E-value=1.1e-47 Score=297.07 Aligned_cols=163 Identities=25% Similarity=0.437 Sum_probs=149.8
Q ss_pred EeeeCCCcEEEEEEccc--cccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEE
Q 029924 7 TLSFSTKTSLKISKGDI--SRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARI 79 (185)
Q Consensus 7 ~~~~~~~~~i~i~~GDI--~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~ 79 (185)
+++...+.+|.+++||| |++++ |+|||++|++|.+++| +++||++|++||+++.+ ..+++++|++++
T Consensus 11 ~~~~~~~~~i~i~~gDI~~t~~~v----DaIVNaaN~~L~~ggGV~~AI~~aaG~~l~~ec~~~~~--~~g~~~~G~~~i 84 (186)
T cd02904 11 TKSLFLGQKLSLVQSDISIGSIDV----EGIVHPTNADIDLKGEVGNALEKKGGKEFVEAVKELRK--SNGPLEIAGAAV 84 (186)
T ss_pred chhhcCCCEEEEEECCccccceec----cEEEcCCccccCCCCcHhHHHHHHcCHHHHHHHHHHHH--hcCCCCCCCEEE
Confidence 34455689999999999 99886 9999999999999988 99999999999998763 346899999999
Q ss_pred ccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc--
Q 029924 80 TPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN-- 157 (185)
Q Consensus 80 T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~-- 157 (185)
|++|+||||||||+|+|.|+.+ .+++.|++||++||+.|++++++|||||+||||++|||++++|++|++++++|++
T Consensus 85 T~a~~Lp~k~VIHtVgP~~~~~-~~~~~L~~~~~~~L~~A~e~~~~SIAfPaIstG~~g~P~~~aA~i~~~~i~~~l~~~ 163 (186)
T cd02904 85 SQAHGLPAKFVIHCHSPQWGSD-KCEEQLEKTVKNCLAAAEDKKLKSIAFPSLPSGRNGFPKQTAAQLILKAISSYFVST 163 (186)
T ss_pred ccCCCCCCCEEEEeCCCCCCCC-chHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999765 4578999999999999999999999999999999999999999999999999985
Q ss_pred ---CCCeEEEEecChHHHHHHH
Q 029924 158 ---DFKEVHFILFTDDIYNVWL 176 (185)
Q Consensus 158 ---~l~~V~~v~~~~~~~~~f~ 176 (185)
++++|+||+|+++.+++|.
T Consensus 164 ~~~~l~~I~fv~~~~~~~~~y~ 185 (186)
T cd02904 164 MSSSIKQIYFVLFDSESIGIYV 185 (186)
T ss_pred CCCCccEEEEEECCHHHHHHhh
Confidence 4789999999999999984
No 2
>cd02907 Macro_Af1521_BAL_like Macro domain, Af1521- and BAL-like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. The macro domains in this family show similarity to Af1521, a protein from Archaeoglobus fulgidus containing a stand-alone macro domain. Af1521 binds ADP-ribose and exhibits phosphatase activity toward Appr-1"-p. Also included in this family are the N-terminal (or first) macro domains
Probab=100.00 E-value=9.9e-45 Score=280.03 Aligned_cols=164 Identities=32% Similarity=0.470 Sum_probs=152.5
Q ss_pred CcEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029924 13 KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 87 (185)
Q Consensus 13 ~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~ 87 (185)
|.+|++++|||+++++ |+||||+|+.+.+++| ++++|++++++|+++.+ ..+++++|++++|++|+|+|
T Consensus 1 ~~~i~i~~GdI~~~~~----DaIVn~an~~~~~~ggv~~ai~~~~G~~l~~e~~~~~~--~~g~~~~G~~~~T~~~~L~~ 74 (175)
T cd02907 1 GVTLSVIKGDITRFPV----DAIVNAANEDLKHGGGLALAIVKAGGPEIQEESDEYVR--KNGPVPTGEVVVTSAGKLPC 74 (175)
T ss_pred CcEEEEEECCcceeec----CEEEECCCCCcCCCCCHHHHHHHHHhHHHHHHHHHHHH--hcCCCCCCcEEEecCCCCCC
Confidence 4789999999999987 9999999999999988 89999999999998763 34689999999999999999
Q ss_pred CeEEEecCCCcCCCC--ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc----CCCe
Q 029924 88 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN----DFKE 161 (185)
Q Consensus 88 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~----~l~~ 161 (185)
|||||+++|.|+.+. .+.+.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+. .+++
T Consensus 75 k~IiH~v~P~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIA~P~lgtG~~g~p~~~~a~~~~~~i~~fl~~~~~~l~~ 154 (175)
T cd02907 75 KYVIHAVGPRWSGGEAEECVEKLKKAILNSLRKAEELGLRSIAIPAISSGIFGFPLERCVETIVEAVKEFLETKGSALKE 154 (175)
T ss_pred CEEEEeCCCcCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHHhcCCCccE
Confidence 999999999999874 4678999999999999999999999999999999999999999999999999986 5789
Q ss_pred EEEEecChHHHHHHHHHHHHH
Q 029924 162 VHFILFTDDIYNVWLKKAKEL 182 (185)
Q Consensus 162 V~~v~~~~~~~~~f~~~~~~~ 182 (185)
|+||+++++.+++|++.++.+
T Consensus 155 I~~v~~~~~~~~~~~~al~~~ 175 (175)
T cd02907 155 IYLVDYDEQTVEAFEKALEVF 175 (175)
T ss_pred EEEEECCHHHHHHHHHHHhhC
Confidence 999999999999999988753
No 3
>cd02908 Macro_Appr_pase_like Macro domain, Appr-1"-pase_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins that show similarity to Appr-1"-pase, containing conserved putative active site residues. Appr-1"-pase is a phosphatase specific for ADP-ribose-1"-monophosphate.
Probab=100.00 E-value=4.2e-44 Score=274.12 Aligned_cols=155 Identities=46% Similarity=0.767 Sum_probs=146.5
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 89 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k~ 89 (185)
+|+|++|||+++++ |+|||++|+++.+++| ++++|++|++||++.. ++++|++++|++|+|+|+|
T Consensus 1 ~i~i~~GdI~~~~~----daIVn~an~~l~~~ggv~~ai~~~~G~~l~~e~~~~~------~~~~G~~v~T~~~~l~~~~ 70 (165)
T cd02908 1 KIEIIQGDITKLEV----DAIVNAANSSLLGGGGVDGAIHRAAGPELLEECRELR------GCPTGEAVITSGYNLPAKY 70 (165)
T ss_pred CeEEEecccceeec----CEEEECCCCcccCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCCEEEeeCCCCCCCE
Confidence 48899999999986 9999999999999998 8999999999999886 6799999999999999999
Q ss_pred EEEecCCCcCCCC-ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeEEEE
Q 029924 90 VIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN---DFKEVHFI 165 (185)
Q Consensus 90 IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~---~l~~V~~v 165 (185)
|||+++|.|+.+. ++.+.|++||++||+.|++++++|||||+||||++|||++.+|++|++++++|++ .+++|+||
T Consensus 71 IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~igtG~~g~p~~~~a~~~~~ai~~fl~~~~~l~~V~~v 150 (165)
T cd02908 71 VIHTVGPVWRGGQHNEAELLASCYRNSLELARENGLRSIAFPAISTGVYGYPLDEAARIALKTVREFLEEHDAIERVIFV 150 (165)
T ss_pred EEEEcCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCEEEECceecCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 9999999998763 5689999999999999999999999999999999999999999999999999996 58899999
Q ss_pred ecChHHHHHHHHHH
Q 029924 166 LFTDDIYNVWLKKA 179 (185)
Q Consensus 166 ~~~~~~~~~f~~~~ 179 (185)
+++++++++|++.+
T Consensus 151 ~~~~~~~~~f~~~l 164 (165)
T cd02908 151 CFSEEDYEIYEKAL 164 (165)
T ss_pred eCCHHHHHHHHHHh
Confidence 99999999999876
No 4
>PRK00431 RNase III inhibitor; Provisional
Probab=100.00 E-value=8.8e-44 Score=275.16 Aligned_cols=167 Identities=39% Similarity=0.630 Sum_probs=154.5
Q ss_pred CCcEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCC
Q 029924 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP 86 (185)
Q Consensus 12 ~~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~ 86 (185)
++.+|+|++|||+++++ |||||++|+.+.+++| ++++|++++++|+++.+ .++++++|++++|++++|+
T Consensus 1 ~~~~i~i~~Gdi~~~~~----daIVn~aN~~~~~~ggva~aI~~~~G~~l~~e~~~~~~--~~~~l~~G~~~~T~~~~l~ 74 (177)
T PRK00431 1 MGMRIEVVQGDITELEV----DAIVNAANSSLLGGGGVDGAIHRAAGPEILEECRELRQ--QQGPCPTGEAVITSAGRLP 74 (177)
T ss_pred CCcEEEEEeCCcccccC----CEEEECCCccccCCCcHHHHHHHHHHHHHHHHHHHHHH--hcCCCCCCeEEEecCCCCC
Confidence 36799999999999976 9999999999999988 89999999999998863 3469999999999999999
Q ss_pred CCeEEEecCCCcCCCC-ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc---CCCeE
Q 029924 87 VSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN---DFKEV 162 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~---~l~~V 162 (185)
++||||+++|.|+.+. .+.+.|++||++||+.|++++++|||||+||||++|+|++++|++|++++++|+. .+++|
T Consensus 75 ~~~IiH~v~P~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIa~P~lgtG~~g~p~~~~A~~~~~~i~~f~~~~~~l~~I 154 (177)
T PRK00431 75 AKYVIHTVGPVWRGGEDNEAELLASAYRNSLRLAAELGLRSIAFPAISTGVYGYPLEDAARIAVKTVREFLTRHKSPEEV 154 (177)
T ss_pred CCEEEEecCCeecCCCCcHHHHHHHHHHHHHHHHHHcCCceEEECccccCccCCCHHHHHHHHHHHHHHHHhcCCCcCEE
Confidence 9999999999998765 3578999999999999999999999999999999999999999999999999975 57899
Q ss_pred EEEecChHHHHHHHHHHHHHhc
Q 029924 163 HFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 163 ~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
+||+++++++++|+++|....+
T Consensus 155 ~~v~~~~~~~~~f~~~l~~~~~ 176 (177)
T PRK00431 155 YFVCYDEEAYRLYERLLTQQGD 176 (177)
T ss_pred EEEECCHHHHHHHHHHHHHhhc
Confidence 9999999999999999987653
No 5
>PRK04143 hypothetical protein; Provisional
Probab=100.00 E-value=6.2e-44 Score=289.40 Aligned_cols=166 Identities=35% Similarity=0.517 Sum_probs=150.5
Q ss_pred CCcEEEEEEccccccccCCCCcEEEEccCCCCCCC-----ch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEcc
Q 029924 12 TKTSLKISKGDISRWCVDRSSDAIVSPTNEILLLG-----GF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITP 81 (185)
Q Consensus 12 ~~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~-----~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~ 81 (185)
.+.+|.|++||||++++ |||||+||+.|.++ +| +++||++|+++|+++++. ++..+++|++++|+
T Consensus 81 ~~~~i~i~~GDIt~l~v----DAIVNAANs~L~g~~~p~~ggId~aI~~aAG~~L~~eC~~~~~~-~g~~~~~G~a~iT~ 155 (264)
T PRK04143 81 KYDNIFLWQGDITRLKV----DAIVNAANSRLLGCFQPNHDCIDNAIHTFAGVQLRLDCAEIMTE-QGRKEATGQAKITR 155 (264)
T ss_pred CCCEEEEEECCcceeec----CEEEeCcccccccCCCCCCCcHHHHHHHHhChHHHHHHHHHHHH-cCCCCCCceEEEec
Confidence 47899999999999986 99999999999864 44 899999999999998753 34578999999999
Q ss_pred CCCCCCCeEEEecCCCcCCC---CChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhcC
Q 029924 82 GFKLPVSHVIHTVGPVFNFH---CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAND 158 (185)
Q Consensus 82 ~~~L~~k~IiH~v~P~~~~~---~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~ 158 (185)
+|+|+|+||||+|+|.|+.+ ..+.+.|++||++||+.|.+++++|||||+||||++|||++.+|++|++++++|++.
T Consensus 156 ~~nLp~kyVIHtVgP~~~~g~~~~~~~~~L~~cy~s~L~~A~~~~~kSIAfP~IsTGi~gfP~~~aA~ia~~tv~~fl~~ 235 (264)
T PRK04143 156 AYNLPAKYVIHTVGPIIRKQPVSPIRADLLASCYRSCLKLAEKAGLKSIAFCCISTGVFGFPKEEAAEIAIKTVLSWLKE 235 (264)
T ss_pred CCCCCCCEEEEECCCcccCCCCCcchHHHHHHHHHHHHHHHHHcCCCEEEeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999874 245789999999999999999999999999999999999999999999999999962
Q ss_pred ---CCeEEEEecChHHHHHHHHHHHHH
Q 029924 159 ---FKEVHFILFTDDIYNVWLKKAKEL 182 (185)
Q Consensus 159 ---l~~V~~v~~~~~~~~~f~~~~~~~ 182 (185)
..+|+|++|+++.++.|++.|...
T Consensus 236 ~~~~~~Vif~vf~~~d~~iy~~~l~~~ 262 (264)
T PRK04143 236 NPSKLKVVFNVFTDEDLELYQKALNKE 262 (264)
T ss_pred CCCCCEEEEEEcCHHHHHHHHHHHHHh
Confidence 358999999999999999998753
No 6
>cd02905 Macro_GDAP2_like Macro domain, GDAP2_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family contains proteins similar to human GDAP2, the ganglioside induced differentiation associated protein 2, whose gene is expressed at a higher level in differentiated Neuro2a cells compared with non-differentiated cells. GDAP2 contains an N-terminal macro domain and a C-terminal
Probab=100.00 E-value=3e-43 Score=262.23 Aligned_cols=132 Identities=39% Similarity=0.623 Sum_probs=124.8
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 89 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k~ 89 (185)
+|.+++||||++++ |||||++|++|.+++| ++++|++|++||++.. ++++|++++|++|+|+|||
T Consensus 2 ki~l~~GdIt~~~v----DaIVNaan~~l~~~ggv~~aI~~aaG~~l~~e~~~~~------~~~~G~~~~T~~~~L~~k~ 71 (140)
T cd02905 2 RIVLWEGDICNLNV----DAIVNSTNETLTDKNPISDKIFARAGSELREEIQTLG------GCRTGEAKLTKGYNLPARF 71 (140)
T ss_pred eEEEEeCccCcccC----CEEEeCCccccCCCCcHHHHHHHHhCHHHHHHHHHhC------CCCCCcEEEecCCCCCccE
Confidence 68899999999987 9999999999998888 8999999999999875 6899999999999999999
Q ss_pred EEEecCCCcCCCCC--hHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 90 VIHTVGPVFNFHCN--PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 90 IiH~v~P~~~~~~~--~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
|||+++|.|+.++. .++.|++||++||+.|.+++++|||||+||||++|||++++|++|++++++|+
T Consensus 72 VIH~vgP~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIAfPai~tG~~gfP~~~aa~i~l~~v~~~l 140 (140)
T cd02905 72 IIHTVGPKYNVKYRTAAENALYSCYRNVLQLAKELGLESIALCVISSEKRNYPPEAAAHIALRTVRRFL 140 (140)
T ss_pred EEEecCCccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHhC
Confidence 99999999998753 47899999999999999999999999999999999999999999999999985
No 7
>COG2110 Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1 [General function prediction only]
Probab=100.00 E-value=3.4e-40 Score=253.12 Aligned_cols=166 Identities=37% Similarity=0.609 Sum_probs=154.1
Q ss_pred cEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCC
Q 029924 14 TSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVS 88 (185)
Q Consensus 14 ~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k 88 (185)
..|.+++||||++.+ |+|||+||+.+.+|+| ++++|++++++|++....+++.+.++|++++|++++|+++
T Consensus 3 ~~i~~v~GDIt~~~~----daIVnaAN~~l~~gGGVd~AI~~~~g~~l~~~~~~~~~~~~~~~~~~G~Avit~~~~l~a~ 78 (179)
T COG2110 3 TNIRVVQGDITKLEA----DAIVNAANSQLLGGGGVAGAIHRAAGPQLEEECAEIAPKRGGGRIPVGEAVITEAGRLPAK 78 (179)
T ss_pred ceEEEEecccceeeh----hheeecccccCCCCCcHHHHHHHHhhHHHHHHHHHHhhhhcCCCCCceEEEEccCcCCCCC
Confidence 578999999999987 9999999999999998 8999999999999987555566788999999999999999
Q ss_pred eEEEecCCCcCCCC-ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc--CCCeEEEE
Q 029924 89 HVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN--DFKEVHFI 165 (185)
Q Consensus 89 ~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~--~l~~V~~v 165 (185)
||||+++|.|..+. ...+.|..||+++|++|.+++++|||||++|||.+|||++.+|+++++++++|+. .+..|.|+
T Consensus 79 ~ViH~vgp~~~~g~~~~~e~l~~a~~~~l~~a~~~g~~SiAfPaistGv~G~p~~~aa~i~~~~v~~~~~~~~~~~v~~v 158 (179)
T COG2110 79 YVIHTVGPSWRGGSKDEAELLAAAYRAALRLAKEAGVRSVAFPAISTGVYGFPLEEAARIAVEAVKDFLPEASIETVIFV 158 (179)
T ss_pred EEEecCCCcccCCChhHHHHHHHHHHHHHHHHHHcCCceeecccccCcccCCCHHHHHHHHHHHHHHhcccccccEEEEE
Confidence 99999999998875 4568999999999999999999999999999999999999999999999999996 67899999
Q ss_pred ecChHHHHHHHHHHHHHh
Q 029924 166 LFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 166 ~~~~~~~~~f~~~~~~~~ 183 (185)
+++++.+..|...+.+..
T Consensus 159 ~~~~e~~~~~~~~~~~~~ 176 (179)
T COG2110 159 VYGEETARVYEELLSTHL 176 (179)
T ss_pred ecCchhHHHHHHHHhhhc
Confidence 999999999999887654
No 8
>cd02906 Macro_1 Macro domain, Unknown family 1. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a macro domain, either as a stand-alone domain or in addition to a C-terminal SIR2 (silent information regulator 2) domain.
Probab=100.00 E-value=5.6e-40 Score=246.70 Aligned_cols=134 Identities=41% Similarity=0.656 Sum_probs=121.9
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCC-----ch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCC
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLG-----GF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK 84 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~-----~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~ 84 (185)
+|++++|||+++++ |||||++|++|.++ +| ++++|++|++||+++.+. .++.+++|++++|++++
T Consensus 1 ~i~v~~GdIt~~~~----DaIVNaaN~~l~~~~g~~~ggv~~aI~~~aG~~l~~e~~~~~~~-~g~~~~~G~a~~T~~~~ 75 (147)
T cd02906 1 SIYLWKGDITTLKV----DAIVNAANSTLLGCFQPLHRCIDNIIHTFAGPQLRQACFELMTK-QGREEPTGQAKITPGYN 75 (147)
T ss_pred CeEEEECCcCCccC----CEEECCCCcccCcCcCCCCCcHHHHHHHHhCHHHHHHHHHHHHh-cCCCCCCCeEEEEeCCC
Confidence 47899999999986 99999999999754 44 899999999999998743 34578999999999999
Q ss_pred CCCCeEEEecCCCcCCCC---ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHH
Q 029924 85 LPVSHVIHTVGPVFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 153 (185)
Q Consensus 85 L~~k~IiH~v~P~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~ 153 (185)
|+|+||||+++|.|+.+. ++.+.|++||++||+.|.+++++|||||+||||++|||++++|++++++++
T Consensus 76 L~~k~VIHavgP~~~~~~~~~~~~~~L~~~~~~~L~~a~~~~~~sIA~P~i~tG~~g~p~~~aA~i~~~~v~ 147 (147)
T cd02906 76 LPAKYVIHTVGPIIERGLTTPIHRDLLAKCYLSCLDLAEKAGLKSIAFCCISTGLFGFPQEEAAQIAIKTVL 147 (147)
T ss_pred CCCCEEEEECCCcccCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHhC
Confidence 999999999999998764 457899999999999999999999999999999999999999999999875
No 9
>cd02903 Macro_BAL_like Macro domain, BAL_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to BAL (B-aggressive lymphoma) proteins, which contain one to three macro domains. Most BAL family macro domains belong to this family except for the most N-terminal domain in multiple-domain containing proteins. Most BAL proteins also contain a C-termin
Probab=100.00 E-value=8.1e-39 Score=237.95 Aligned_cols=130 Identities=33% Similarity=0.443 Sum_probs=120.3
Q ss_pred cEEEEEEccccccccCCCCcEEEEccCCC-CCCCch-----hhhhCHHHHHHHhhccccCCCCCCC-CCcEEEccCCCCC
Q 029924 14 TSLKISKGDISRWCVDRSSDAIVSPTNEI-LLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCP-PGEARITPGFKLP 86 (185)
Q Consensus 14 ~~i~i~~GDI~~~~~~~~~D~IVn~an~~-l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~-~G~~~~T~~~~L~ 86 (185)
.+|++++|||+++++ |||||++|+. +.+++| ++++|++++++|+++. .++ +|++++|++++|+
T Consensus 1 ~~i~i~~GdI~~~~~----DaIVN~an~~~~~~~ggv~~aI~~~~G~~l~~~~~~~~------~~~~~G~~~vT~~~~L~ 70 (137)
T cd02903 1 LTLQVAKGDIEDETT----DVIVNSVNPDLFLLKGGVSKAILRKAGPELQKELDKAK------LGQTVGSVIVTKGGNLP 70 (137)
T ss_pred CEEEEEeCccCCccC----CEEEECCCCccCCCCCCHHHHHHHhccHHHHHHHHHHc------CCCCCCeEEEecCCCCC
Confidence 378999999999986 9999999999 677776 8999999999999876 233 6999999999999
Q ss_pred CCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 029924 87 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 155 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~ 155 (185)
||||||+++|.|..+ +.+.|++||++||+.|++++++|||||+||||.+|||++++|++|++++++|
T Consensus 71 ~k~IiH~~~p~~~~~--~~~~l~~~~~~~L~~a~~~~~~SIAfP~igtG~~g~p~~~~A~~~~~~i~~f 137 (137)
T cd02903 71 CKYVYHVVLPNWSNG--ALKILKDIVSECLEKCEELSYTSISFPAIGTGNLGFPKDVVAKIMFDEVFKF 137 (137)
T ss_pred CCEEEEecCCCCCCc--hHHHHHHHHHHHHHHHHHCCCcEEEECCCcCcCCCCCHHHHHHHHHHHHHhC
Confidence 999999999999875 5789999999999999999999999999999999999999999999999886
No 10
>cd03330 Macro_2 Macro domain, Unknown family 2. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. This family is composed of uncharacterized proteins containing a stand-alone macro domain.
Probab=100.00 E-value=3.3e-34 Score=212.06 Aligned_cols=127 Identities=30% Similarity=0.446 Sum_probs=117.3
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 89 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k~ 89 (185)
.|++++|||+++++ |+|||++|+.+.+++| ++++|++++++|.+.. ++++|++++|++++|+|||
T Consensus 1 ~i~i~~GdI~~~~~----DaIVn~~N~~~~~g~Gva~ai~~~~G~~~~~~~~~~~------~~~~G~~~~t~~~~l~~k~ 70 (133)
T cd03330 1 ELEVVQGDITKVDA----DAIVNAANSRLRMGGGVAGAIKRAGGSVIEREAVRKA------PIPVGEAVITGAGDLPARY 70 (133)
T ss_pred CEEEEEcccccccC----CEEEeCCCCCCCCCCcHHHHHHHHhCHHHHHHHHHcC------CCCCCeEEEEeCCCCCCCE
Confidence 37899999999986 9999999999999998 8899999999998753 7899999999999999999
Q ss_pred EEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHH
Q 029924 90 VIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 152 (185)
Q Consensus 90 IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i 152 (185)
|||+++|.+.. ..+.+.|++||+++|+.|.+++++|||||+||||.+|+|++++|++|.++|
T Consensus 71 Iih~~~~~~~~-~~~~~~l~~~~~~~l~~a~~~~~~sIA~P~igtG~~g~~~~~~a~i~~~~i 132 (133)
T cd03330 71 VIHAATMEEPG-RSSEESVRKATRAALALADELGIESVAFPAMGTGVGGLPKEDVARLMVEVI 132 (133)
T ss_pred EEEeCCCCCCC-CCHHHHHHHHHHHHHHHHHHcCCCEEEECcccccCCCCCHHHHHHHHHHHh
Confidence 99999997654 356789999999999999999999999999999999999999999999886
No 11
>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=2.8e-31 Score=204.99 Aligned_cols=160 Identities=33% Similarity=0.558 Sum_probs=141.1
Q ss_pred eeEeeeCC--CcEEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcE
Q 029924 5 VQTLSFST--KTSLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEA 77 (185)
Q Consensus 5 ~~~~~~~~--~~~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~ 77 (185)
.+.|++.+ |..|.+++||++..++ |+|| |..|+| ++++||++.+||..+. .+++|.+
T Consensus 22 l~~f~~~~~~~~~i~lwr~d~~~l~v----~avv------l~~g~~~~~ai~~aagp~l~~e~~~~~------~c~tG~a 85 (200)
T KOG2633|consen 22 LEVFKIDKPDNGGISLWRGDGKTLEV----DAVV------LLGGKGVDEAIHRAAGPELPLECAYLH------GCRTGAA 85 (200)
T ss_pred cchhhccCccccCeeEeecccccccc----eeee------eccCcchhHHHHHhcCCcchHHHHhhc------CCCCCee
Confidence 34556644 8899999999999997 9998 555555 9999999999999884 5999999
Q ss_pred EEccCCCCCCCeEEEecCCCcCCCCCh-HHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 78 RITPGFKLPVSHVIHTVGPVFNFHCNP-EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 78 ~~T~~~~L~~k~IiH~v~P~~~~~~~~-~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
++|++++||+|+|||+++|.|...+.+ ...|..||++||..|.+++++|||||.|++|.+|||++.+|++.++++++|+
T Consensus 86 k~t~~~~Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~~~ls~iAf~~I~sg~~gyP~e~aa~~~l~ti~~~f 165 (200)
T KOG2633|consen 86 KSTGGYGLPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIEKLLSSIAFPKISSGRVGYPWEDAAKIELETIRVFF 165 (200)
T ss_pred EecCCCCCceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHHhccceeeeeeeeccccCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988733 2369999999999999999999999999999999999999999999999998
Q ss_pred c-----CCCeEEEEecChHHHHHHHHHHH
Q 029924 157 N-----DFKEVHFILFTDDIYNVWLKKAK 180 (185)
Q Consensus 157 ~-----~l~~V~~v~~~~~~~~~f~~~~~ 180 (185)
. .++.+.|+.++.+.|..|..++.
T Consensus 166 ~~~~d~~l~~~~f~~~d~e~~~~~l~~~~ 194 (200)
T KOG2633|consen 166 VKNKDSSLKTVPFLDYDSESYGAYLPEYA 194 (200)
T ss_pred hhCCCceEEEEEEeccCCchHHHHHhhhc
Confidence 5 35568899999999998877654
No 12
>cd02900 Macro_Appr_pase Macro domain, Appr-1"-pase family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. The yeast protein Ymx7 and related proteins in this family contain a stand-alone macro domain and may be specific phosphatases catalyzing the conversion of ADP-ribose-1"-monophosphate (Appr-1"-p) to ADP-ribose. Appr-1"-p is an intermediate in a metabolic pathway involved in pre-tRNA splicing.
Probab=99.97 E-value=8.6e-31 Score=203.14 Aligned_cols=144 Identities=20% Similarity=0.172 Sum_probs=120.9
Q ss_pred CcEEEEEEcccccccc------CCCCcEEEEccCCCCCCCch-----hhhhC-HHHHHHHhhccccCCCCCCCCCcEEEc
Q 029924 13 KTSLKISKGDISRWCV------DRSSDAIVSPTNEILLLGGF-----TAAAG-PDLQKACYQIPEAQPRVRCPPGEARIT 80 (185)
Q Consensus 13 ~~~i~i~~GDI~~~~~------~~~~D~IVn~an~~l~~~~g-----~~~~G-~~l~~e~~~~~~~~~~~~~~~G~~~~T 80 (185)
...+.+++|+++++.. .+++|+||||||+.+.+|+| ++++| ++|+++|++....+..+.+++|++++|
T Consensus 18 ~~~v~~~~~~~~~i~~~~~~~~~~~~DaIVnpANs~~~mgGGvD~AI~~~~G~~~le~~~q~~~~~~~~g~lpvG~a~it 97 (186)
T cd02900 18 SKYVCIVNGGLETIEDSVRKLHHGHFDSIVSPANSYGYLDGGFDLAIRNFFGGKPLETWVQNQLLRKYLGYLPVGSATVV 97 (186)
T ss_pred CCCeEEEeCCceecchhhcccccCccCEEEeCCCcccCCCCcHHHHHHHHcChHHHHHHHHHHHHHhcCCCCCCCcEEEe
Confidence 3457777777776652 12359999999999999999 88889 789999976542233579999999999
Q ss_pred cCCCCC----------CCeEEEecCCCcC-CCCChHHHHHHHHHHHHHHHHHc--CcceeeecccccCCCCCCHHHHHHH
Q 029924 81 PGFKLP----------VSHVIHTVGPVFN-FHCNPEDILRSAYKNCLSVGKAN--NIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 81 ~~~~L~----------~k~IiH~v~P~~~-~~~~~~~~L~~~~~~~L~~a~~~--~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
++++|+ ++||||++++.+. ....+.+.|++||+++|+.|.++ +++|||||+||||.+|+|++++|++
T Consensus 98 ~~~~l~~~~~~~~~~~~~~iIHaPtm~~P~~~~~~~~~l~~a~~~~L~~a~~~~~~i~sIa~P~igTGvgg~p~~~aA~~ 177 (186)
T cd02900 98 PLGRALLEKTIYCRWGIPYLIHAPTMRVPSPVITGTEPVFDAMWNALNAIPKENQEINTLVLPGLGTGYGGVPPEIAAKQ 177 (186)
T ss_pred cCCCCccccccccccCCCEEEEcCcccCCCCCCCcHHHHHHHHHHHHHHHHhccCCCCEEEECchhcCCCCCCHHHHHHH
Confidence 999999 9999999886665 22245679999999999999987 8999999999999999999999999
Q ss_pred HHHHHHHHh
Q 029924 148 AISTVKEFA 156 (185)
Q Consensus 148 ~l~~i~~~~ 156 (185)
|+.++++|.
T Consensus 178 m~~ai~~f~ 186 (186)
T cd02900 178 MAFAIRLFN 186 (186)
T ss_pred HHHHHHHhC
Confidence 999999874
No 13
>smart00506 A1pp Appr-1"-p processing enzyme. Function determined by Martzen et al. Extended family detected by reciprocal PSI-BLAST searches (unpublished results, and Pehrson & Fuji).
Probab=99.97 E-value=1.6e-29 Score=185.98 Aligned_cols=125 Identities=38% Similarity=0.540 Sum_probs=112.4
Q ss_pred EEEEEccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHH-HHHHhhccccCCCCCCCCCcEEEccCCCCCCCe
Q 029924 16 LKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDL-QKACYQIPEAQPRVRCPPGEARITPGFKLPVSH 89 (185)
Q Consensus 16 i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l-~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k~ 89 (185)
|++++|||+++++ |+|||++|+++.+++| ++++|+++ ++++++.. ++++++|++++|+++++++++
T Consensus 2 i~~~~Gdi~~~~~----d~IV~~~n~~~~~~~g~a~~i~~~~g~~~~~~~~~~~~----~~~~~~G~~~~~~~~~~~~~~ 73 (133)
T smart00506 2 LKVVKGDITKPRA----DAIVNAANSDGAHGGGVAGAIARAAGKALEKEAFRKLA----GGECPVGTAVVTEGGNLPAKY 73 (133)
T ss_pred eEEEeCCCCcccC----CEEEECCCcccCCCCcHHHHHHHHhChHHHHHHHHHhc----CCCcCCccEEEecCCCCCCCE
Confidence 7899999999976 9999999999999988 78889986 55555442 237899999999999999999
Q ss_pred EEEecCCCcCCC-CChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 90 VIHTVGPVFNFH-CNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 90 IiH~v~P~~~~~-~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
|||+++|+|... ..+.+.|++||++||+.|.+++++||+||+||||++|+|++++++++
T Consensus 74 Iih~~~p~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~ 133 (133)
T smart00506 74 VIHAVGPRASGHSNEGFELLENAYRNCLELAIELGITSVAIPLIGTGIYGVPKDRSAQAL 133 (133)
T ss_pred EEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHhhC
Confidence 999999999887 36789999999999999999999999999999999999999999864
No 14
>cd02749 Macro Macro domain, a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes.
Probab=99.96 E-value=6.1e-29 Score=186.09 Aligned_cols=131 Identities=33% Similarity=0.545 Sum_probs=119.0
Q ss_pred EEEEEEccccc-cccCCCCcEEEEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCC-C
Q 029924 15 SLKISKGDISR-WCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLP-V 87 (185)
Q Consensus 15 ~i~i~~GDI~~-~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~-~ 87 (185)
.|++++|||++ .++ |+|||++|+.+.+++| ++++|+++++++++..+.+ .+++|++.+|++++++ +
T Consensus 1 ~i~~~~GDi~~~~~~----d~IVn~~n~~~~~g~gi~~ai~~~~g~~~~~~~~~~~~~~---~~~~G~~~~t~~~~~~~~ 73 (147)
T cd02749 1 KIKVVSGDITKPLGS----DAIVNAANSSGRDGGGVNLAISKKAGKELEEESKKLRKEL---ELQVGEAVLTKGYNLDGA 73 (147)
T ss_pred CEEEEECCCCCCCCC----CEEEeCCCCCCCCCChHHHHHHHHhCHHHHHHHHHHhccc---CCCCCCEEECcCCCCCcC
Confidence 37899999999 765 9999999999999998 6788999999999876322 3789999999999999 9
Q ss_pred CeEEEecCCCcCCCC--ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCC------CHHHHHHHHHHHH
Q 029924 88 SHVIHTVGPVFNFHC--NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY------PPDEAATIAISTV 152 (185)
Q Consensus 88 k~IiH~v~P~~~~~~--~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~------p~~~~a~~~l~~i 152 (185)
+||||+++|+|.... .+.+.|++||++||+.|.+++++|||||.||||.+|+ |++.++++|++++
T Consensus 74 ~~vih~~~p~~~~~~~~~~~~~l~~a~~~~L~~~~~~~~~sIa~P~igtG~~g~~~~~~~~~~~~~~i~~~~~ 146 (147)
T cd02749 74 KYLIHIVGPKYNQGNNKAAFELLKNAYENCLKEAEEKGIKSIAFPLIGTGPAGFPKDEREPWEDAIKIALEAA 146 (147)
T ss_pred CEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHHHHHcCCCEEEECCcccccCCCCccccCCHHHHHHHHHHHh
Confidence 999999999998874 3578999999999999999999999999999999999 9999999999875
No 15
>PF01661 Macro: Macro domain; InterPro: IPR002589 The Macro or A1pp domain is a module of about 180 amino acids which can bind ADP-ribose, an NAD metabolite or related ligands. Binding to ADP-ribose could be either covalent or non-covalent []: in certain cases it is believed to bind non-covalently []; while in other cases (such as Aprataxin) it appears to bind both non-covalently through a zinc finger motif, and covalently through a separate region of the protein []. The domain was described originally in association with ADP-ribose 1''-phosphate (Appr-1''-P) processing activity (A1pp) of the yeast YBR022W protein []. The domain is also called Macro domain as it is the C-terminal domain of mammalian core histone macro-H2A [, ]. Macro domain proteins can be found in eukaryotes, in (mostly pathogenic) bacteria, in archaea and in ssRNA viruses, such as coronaviruses, Rubella and Hepatitis E viruses. In vertebrates the domain occurs e.g. in histone macroH2A, in predicted poly-ADP-ribose polymerases (PARPs) and in B aggressive lymphoma (BAL) protein. The macro domain can be associated with catalytic domains, such as PARP, or sirtuin. The Macro domain can recognise ADP-ribose or in some cases poly-ADP-ribose, which can be involved in ADP-ribosylation reactions that occur in important processes, such as chromatin biology, DNA repair and transcription regulation []. The human macroH2A1.1 Macro domain binds an NAD metabolite O-acetyl-ADP-ribose []. The Macro domain has been suggested to play a regulatory role in ADP-ribosylation, which is involved in inter- and intracellular signaling, transcriptional regulation, DNA repair pathways and maintenance of genomic stability, telomere dynamics, cell differentiation and proliferation, and necrosis and apoptosis. The 3D structure of the Macro domain has a mixed alpha/beta fold of a mixed beta sheet sandwiched between four helices. Several Macro domain only domains are shorter than the structure of AF1521 and lack either the first strand or the C-terminal helix 5. Well conserved residues form a hydrophobic cleft and cluster around the AF1521-ADP-ribose binding site [, , , ]. ; PDB: 2DX6_A 2XD7_D 3Q71_A 2FAV_B 1SPV_A 3EKE_A 3EJF_A 1YD9_B 3GPG_B 3GPQ_A ....
Probab=99.95 E-value=5.6e-28 Score=174.07 Aligned_cols=111 Identities=43% Similarity=0.672 Sum_probs=101.7
Q ss_pred EEccCCCCCCCch-----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCCCeEEEecCCCcCCCC--ChHHHH
Q 029924 36 VSPTNEILLLGGF-----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPVSHVIHTVGPVFNFHC--NPEDIL 108 (185)
Q Consensus 36 Vn~an~~l~~~~g-----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~k~IiH~v~P~~~~~~--~~~~~L 108 (185)
||++|+++.+++| ++++|++++++|++..+. ++++++|++++|++++|++++|||+++|.|.... .+.+.|
T Consensus 1 Vn~~N~~~~~g~Gva~ai~~~~g~~~~~~~~~~~~~--~~~~~~G~~~~t~~~~l~~~~Iih~v~P~~~~~~~~~~~~~L 78 (118)
T PF01661_consen 1 VNAANCFLSMGGGVAKAIFKAAGPALQEECKEIKKK--GGELPVGEVIVTPGGNLPCKYIIHAVGPTYNSPGEKNSYEAL 78 (118)
T ss_dssp EEEEETTSSBSSHHHHHHHHHHTHHHHHHHHHHHHH--HHSSSTTSEEEEEETTSSSSEEEEEEEEETTTSTSTTHHHHH
T ss_pred CcCCCCCCCCCchHHHHHHHhchHHHHHHHHHhhcc--cCcccCCCeeeecCCCccccceEEEecceeccccccccHHHH
Confidence 8999999999999 889999999999887521 2368999999999999999999999999997443 678999
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
+++|+++|+.|++++++||+||+||||++|+|+++++++|
T Consensus 79 ~~~~~~~l~~a~~~~~~sIa~P~ig~G~~g~~~~~~a~i~ 118 (118)
T PF01661_consen 79 ESAYRNALQKAEENGIKSIAFPAIGTGIGGFPWDEVAEIM 118 (118)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEESTTSSTTSBTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcccccCcccCCCCCCCHHHHHhhC
Confidence 9999999999999999999999999999999999999986
No 16
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.94 E-value=2.7e-29 Score=228.62 Aligned_cols=167 Identities=20% Similarity=0.275 Sum_probs=148.9
Q ss_pred CCcEEEEEE----ccccccccCCCCcEEEEccCCCCCCCch-----hhhhCHHH---HHHHhhcccc-------------
Q 029924 12 TKTSLKISK----GDISRWCVDRSSDAIVSPTNEILLLGGF-----TAAAGPDL---QKACYQIPEA------------- 66 (185)
Q Consensus 12 ~~~~i~i~~----GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~~~G~~l---~~e~~~~~~~------------- 66 (185)
++.++.+++ ||||.+++ |+|||++|..+.+|+| +++||+++ +++|+++..+
T Consensus 473 ~~~~~~~~~~~~~~dit~~~~----d~ivnaan~~ll~~~g~~~ai~~~~g~~~~~~~~~~~~~~~~~~~l~~~~rp~~~ 548 (725)
T PRK13341 473 EGERLAILRDRLWSDITWQRH----DRVLNLANRSLLWALGPLRAVPEGGVTVLCSSQEDSDRLVAQLELLDPLERPVLL 548 (725)
T ss_pred cccHHHHHHHHHhcccccccc----ceeEEccCccchhhhhHHHhccCCCeEEecCCHHHHHHHHHHHhhcchhhCcccc
Confidence 356788889 99999986 9999999999999998 89999999 8888874321
Q ss_pred -------CC----------CCCCCCCcEEEc------------cCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHH
Q 029924 67 -------QP----------RVRCPPGEARIT------------PGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLS 117 (185)
Q Consensus 67 -------~~----------~~~~~~G~~~~T------------~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~ 117 (185)
+. .|.+++|++++| ++|+|+++||||++||.|..+.. ...|.+||+++|.
T Consensus 549 ~~~~~~~~~l~~~~~f~~~~g~~~~g~a~~T~~~~~~l~~~~~~~g~L~~~~vIh~vGp~~~~~~~-~~~l~~~~~~~L~ 627 (725)
T PRK13341 549 DGSLEALKTLPANLQFEWIGGRLPTGDAVVTKELWQQLTEKLTPAGKLKLLYSIPAVGPAWALLSE-DELLYKALYSALL 627 (725)
T ss_pred ccchhhhhhcCcccceeeeeccCcccchhhHHHHHHHHHHhcCCCCeeEEEEeccccChHhhhcCc-cchhHHHHHHHHH
Confidence 00 368999999999 99999999999999999987654 5689999999999
Q ss_pred HHHHcCcc----------eeeecccccCCCCCCHHHHHHHHHHHHHHHhcC---CCeEEEEecChHHHHHHHHHHHHHh
Q 029924 118 VGKANNIQ----------YIAFPAISCGVSQYPPDEAATIAISTVKEFAND---FKEVHFILFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 118 ~a~~~~~~----------SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~---l~~V~~v~~~~~~~~~f~~~~~~~~ 183 (185)
.|++++++ |||||+||||++|||.+++++++++++++|+.. ..++.++.++++++..|++.+.++|
T Consensus 628 ~Aee~~~~~~~~~~~~~~sia~p~istgv~~~p~~~a~~i~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 706 (725)
T PRK13341 628 EAEELWLKLQWDQSLLQQSLEMPGWSTGIEQWPEELALGIDSKLIKRWLAQGPDYRQALATNLEEERICNLDEELTRIL 706 (725)
T ss_pred HHHHHhcccccchhHHHHHHHhcCCccceecCCcccccccCHHHHHHHHhcCCcHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 99999999 999999999999999999999999999999963 3467799999999999999999887
No 17
>cd02901 Macro_Poa1p_like Macro domain, Poa1p_like family. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.
Probab=99.90 E-value=5.9e-23 Score=152.88 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=106.4
Q ss_pred EEEEEEcccccc-ccCCCCcEEEEccCCCCCCCch----hhhhCH----HHHHHHhhccccCCCCCCCCCcEE-EccCCC
Q 029924 15 SLKISKGDISRW-CVDRSSDAIVSPTNEILLLGGF----TAAAGP----DLQKACYQIPEAQPRVRCPPGEAR-ITPGFK 84 (185)
Q Consensus 15 ~i~i~~GDI~~~-~~~~~~D~IVn~an~~l~~~~g----~~~~G~----~l~~e~~~~~~~~~~~~~~~G~~~-~T~~~~ 84 (185)
+|++++|||++. ++ |+|||++|..+.+|+| ++..+| ++++.|++. .+..|++. ++.+++
T Consensus 1 ~i~~v~GDi~~~~~~----d~Iv~~~N~~~~mG~Gia~~i~~~~p~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~ 69 (140)
T cd02901 1 MITYVKGDLLHAPEA----AALAHAVNCDGVMGKGIALQFKEKFPEFVEEYRAACKKK-------ELLLGGVAVLERGSS 69 (140)
T ss_pred CeEEEcCccccCCCC----CEEEEEEcCCCccChHHHHHHHHHCcHHHHHHHHHHHhc-------CCCCCcEEEEecCCC
Confidence 478999999999 65 9999999999999999 444334 445555543 24456655 466677
Q ss_pred CCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHH
Q 029924 85 LPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK 153 (185)
Q Consensus 85 L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~ 153 (185)
+++++|+|+++|.|.........|++|++++++.|.+++++||+||.||||.+|+|++++++++.+.+.
T Consensus 70 ~~~~~I~~~~t~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~sva~P~iG~G~~G~~w~~v~~ii~~~~~ 138 (140)
T cd02901 70 LVSRYIYNLPTKVHYGPKSRYEAIEKSLRELRAHARDNGIKSVAMPRIGCGLGGLDWEEVEPLIEKALA 138 (140)
T ss_pred CCceEEEEeeccCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEeeCCCCCcCCCCCHHHHHHHHHHHhc
Confidence 889999999999877655667899999999999999999999999999999999999999999887764
No 18
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=99.78 E-value=1.8e-17 Score=125.45 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=115.6
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCCch----hhhhCHHHHHHHhhccccCCCCCCCCCcEEE-ccCCCCCCCe
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF----TAAAGPDLQKACYQIPEAQPRVRCPPGEARI-TPGFKLPVSH 89 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~-T~~~~L~~k~ 89 (185)
.|++++|||++...++ .++|||++|....+|+| ++..+|++.++.++.. .+++.+.|++.+ +.+++.+.+|
T Consensus 2 ~i~~v~GDl~~~~~~~-~~~i~h~~N~~g~mG~GIA~~~k~~~P~~~~~y~~~~---~~~~~~lG~~~~~~~~~~~~~~~ 77 (154)
T PHA02595 2 IVDYIKGDIVALFLQG-KGNIAHGCNCFHTMGSGIAGQLAKAFPQILEADKLTT---EGDVEKLGTFSVWEKYVGGHKAY 77 (154)
T ss_pred eEEEECCcccccccCC-CceEEEeeCCCCcCChHHHHHHHHHcChHHHHHHHHh---cCCccccceEEEEEeeccCCCEE
Confidence 4788999998874322 36999999999999999 7787888888776654 233677899976 5667777899
Q ss_pred EEEecCCCcCCCC-ChHHHHHHHHHHHHHHHHHcCc-ceeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEec
Q 029924 90 VIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNI-QYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILF 167 (185)
Q Consensus 90 IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~-~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~ 167 (185)
|+|..+- |+.+. .+...|++++++..+.+.++++ .||+||.||||.+|.|++++.+++.+. ++.+ +|.++.|
T Consensus 78 I~nl~tq-~~~~~~~~y~ai~~~l~~l~~~~~~~~~~~sIa~P~IG~GlgGl~W~~V~~ii~~~----~~~~-~i~Vy~~ 151 (154)
T PHA02595 78 CFNLYTQ-FDPGPNLEYSALMNCFEELNEVFEGTLFKPTIYIPRIGAGIAGGDWDKIEAIIDEA----TPDI-DIVVVEY 151 (154)
T ss_pred EEEEecc-CCCCCCCcHHHHHHHHHHHHHHHHhcCCCcEEeeCCCCccCCCCCHHHHHHHHHHh----cCCC-cEEEEEe
Confidence 9999776 87665 3456799999999999999998 999999999999999999999887654 3344 4666666
Q ss_pred Ch
Q 029924 168 TD 169 (185)
Q Consensus 168 ~~ 169 (185)
++
T Consensus 152 ~~ 153 (154)
T PHA02595 152 EK 153 (154)
T ss_pred cC
Confidence 54
No 19
>PF14519 Macro_2: Macro-like domain; PDB: 1TXZ_A 1TY8_A 1NJR_A.
Probab=99.26 E-value=4.3e-11 Score=97.29 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=85.3
Q ss_pred cEEEEEEcccccccc---------CCCCcEEEEccCCCCCCCch------hhhhCHHHHHHHhhccccCCCCCCCCCcEE
Q 029924 14 TSLKISKGDISRWCV---------DRSSDAIVSPTNEILLLGGF------TAAAGPDLQKACYQIPEAQPRVRCPPGEAR 78 (185)
Q Consensus 14 ~~i~i~~GDI~~~~~---------~~~~D~IVn~an~~l~~~~g------~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~ 78 (185)
..+.+..|++....- +...|+||.|+|+...+||| -..+|+.++..+++.. .++..++|++-
T Consensus 42 ~~~~ih~~~~e~l~~~~~~~~~~~~~~~~aIVSPaNSfGyMgGGFDLai~~~fggk~~E~~~r~~l---~~~y~pvGs~t 118 (280)
T PF14519_consen 42 NYVCIHNGKFESLNHTLRKSNKNHSTKKDAIVSPANSFGYMGGGFDLAISEYFGGKPFENWFRAQL---GERYHPVGSCT 118 (280)
T ss_dssp --EEEEES-HHHHHHHTTSS--------EEEEEEEETT----SHHHHHHHHHHTSHHHHHHHHHHT---TTS---TT--E
T ss_pred ceeeeecCcHHHHHHHHhhccccCCCCcceEECCchhcccCCCchhHHHHHHhCCchhHHHHHHHH---hccccCCCeeE
Confidence 347888888764421 23479999999999999999 3356777777776543 23346788887
Q ss_pred EccCC----------CCCCCeEEEecCC------CcCCCC---ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCC
Q 029924 79 ITPGF----------KLPVSHVIHTVGP------VFNFHC---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQY 139 (185)
Q Consensus 79 ~T~~~----------~L~~k~IiH~v~P------~~~~~~---~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~ 139 (185)
+.+-. +-.++||+|+.+. .|.... ...+.+.++++|.+..+. ..+.+|.+|.||||.+|+
T Consensus 119 vIdL~~~~~~~~~~~~~~i~yIi~~PTMv~P~~~~~d~~~~~~t~~~~vfn~~WN~l~~~p-~~IdtLiiPGLgTGyGgV 197 (280)
T PF14519_consen 119 VIDLPKCFEPSSIYNNWGIRYIIHVPTMVVPEKPVWDREVPYETGWSLVFNAMWNALRHAP-EDIDTLIIPGLGTGYGGV 197 (280)
T ss_dssp EEEGGGGG--------TTEEEEEEEEEES-TTS-S--TT-TTTTTHHHHHHHHHHHHHTS--TT-SEEEE--SSSSTT--
T ss_pred EEECchhhhhhhcccccCceEEEECCccccCCCcccchhHHHHHHHHHHHHHHHHhhccCC-CCCCeEEECCcccccCCC
Confidence 76542 2346899999863 243332 124567788999887764 579999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 029924 140 PPDEAATIAISTVKEFA 156 (185)
Q Consensus 140 p~~~~a~~~l~~i~~~~ 156 (185)
|++.+|+.|+-+++-|.
T Consensus 198 ~p~~sAk~M~fAl~l~~ 214 (280)
T PF14519_consen 198 PPEISAKQMAFALRLYN 214 (280)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999999986
No 20
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=98.83 E-value=1.6e-07 Score=70.92 Aligned_cols=132 Identities=14% Similarity=0.042 Sum_probs=94.8
Q ss_pred EEEEEccccccccC-CCCcEEEEccCCCCCCC-ch----hhhhCHHHHHHHhhccccCCCCCCCCCcEEEccCCC----C
Q 029924 16 LKISKGDISRWCVD-RSSDAIVSPTNEILLLG-GF----TAAAGPDLQKACYQIPEAQPRVRCPPGEARITPGFK----L 85 (185)
Q Consensus 16 i~i~~GDI~~~~~~-~~~D~IVn~an~~l~~~-~g----~~~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~----L 85 (185)
|+.++||+++...+ .+...|++.+|.....| +| ++.-.|+..+.-++-. ..+.+..|++.+.+... .
T Consensus 2 I~yv~GD~~~p~~~~~~~~iI~H~cN~~G~WG~gGia~al~~k~p~~~~~Y~~~~---~~~dl~LG~~~li~v~~~~~~~ 78 (152)
T cd03331 2 VRYVYGDVTHPSAVCAEDAIIVHCVDDSGHWGRGGLFTALEKRSDQPRKAYELAG---KMKDLHLGDLHLFPIDDKNSRL 78 (152)
T ss_pred eEEEeCccCCCCccCCCCeEEEEEECCCCCCCcchHHHHHHHhCCcHHHHHHHHH---hcCCCccccEEEEEeccccCCC
Confidence 78899999998641 11359999999999998 46 5655666654444321 12357789999876532 1
Q ss_pred -CCCeEEEecCCCcCCCC----ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHH
Q 029924 86 -PVSHVIHTVGPVFNFHC----NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAIST 151 (185)
Q Consensus 86 -~~k~IiH~v~P~~~~~~----~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~ 151 (185)
+..+|...++....... -+...|++|+.++-..|.+ +-.||.+|-||+|.+|.|++.+-+++-+.
T Consensus 79 ~~~~~va~l~~q~~~~~~~~~~~~~~aL~~~L~~~~~~a~~-~~~sVhmPrIg~Gl~g~~W~~~E~li~k~ 148 (152)
T cd03331 79 KGPDWVALIVAQHRDKSNPLSGIKLSALEKGLKKIYFAAKQ-KSASVHLPRIGHSTKSFNWYGTERLIRKY 148 (152)
T ss_pred CCCeEEEEEEeEccCCCCCCCccCHHHHHHHHHHHHHHHHc-CCCEEEeCCCCCCCCCCCHHHHHHHHHHH
Confidence 13588888887654432 3568888999888888876 45889999999999999999997775443
No 21
>TIGR02452 conserved hypothetical protein TIGR02452. Members of this uncharacterized protein family are found in Streptomyces, Nostoc sp. PCC 7120, Clostridium acetobutylicum, Lactobacillus johnsonii NCC 533, Deinococcus radiodurans, and Pirellula sp. for a broad but sparse phylogenetic distibution that at least suggests lateral gene transfer.
Probab=98.11 E-value=2.1e-05 Score=64.46 Aligned_cols=87 Identities=22% Similarity=0.291 Sum_probs=71.5
Q ss_pred EEEecCCCcCCC-----C---ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHH---HHhcC
Q 029924 90 VIHTVGPVFNFH-----C---NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVK---EFAND 158 (185)
Q Consensus 90 IiH~v~P~~~~~-----~---~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~---~~~~~ 158 (185)
||=++.|++... . .....++.-++.+|..|..+|.+++.+-++|||.|+-|+.++|+...+.+. +|...
T Consensus 164 vIT~aA~n~~~~~~~~~~~~~~~~~~~k~rm~~vL~ia~~~g~~~LVLGA~GCG~f~N~p~~VA~~f~evL~~~~ef~g~ 243 (266)
T TIGR02452 164 FITSPAPNARPVARLYPISYEEIPMTLKNRMYKVLNIAEDQNIDALVLGAWGCGVFGNDPAEVAKIFHDLLSPGGIFKGR 243 (266)
T ss_pred EEEeCCCCCcchhccCCCccHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccccCCCHHHHHHHHHHHhccCccccCc
Confidence 555666776421 1 124688889999999999999999999999999999999999999999987 67778
Q ss_pred CCeEEEEecChH----HHHHHH
Q 029924 159 FKEVHFILFTDD----IYNVWL 176 (185)
Q Consensus 159 l~~V~~v~~~~~----~~~~f~ 176 (185)
++.|.|-++|.. .+++|+
T Consensus 244 F~~VvFAI~d~~~~~~~~~~F~ 265 (266)
T TIGR02452 244 IKEVVFAILDRHGQSTNTQIFR 265 (266)
T ss_pred eeEEEEEEeCCCCCCcHHhHhh
Confidence 999999999843 467665
No 22
>COG4295 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.51 E-value=0.00097 Score=52.75 Aligned_cols=78 Identities=26% Similarity=0.386 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh---cCCCeEEEEecChH--HHHHHHHHH
Q 029924 105 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA---NDFKEVHFILFTDD--IYNVWLKKA 179 (185)
Q Consensus 105 ~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~---~~l~~V~~v~~~~~--~~~~f~~~~ 179 (185)
.+.|..-++++|.+|..++.+.+.+-+.|||.|+-++..+|+++.+.+.+-. ..++.|.|-++|.+ +..+|++++
T Consensus 199 ~~~l~~R~~kil~la~~~~~~alVLGAwGCGVFrNdPA~Va~iF~~~Lleg~~~~g~fkhv~FavlD~n~~~~~iFr~el 278 (285)
T COG4295 199 REALNIRIKKILKLALSKNPKALVLGAWGCGVFRNDPADVAKIFCQQLLEGISKLGDFKHVVFAVLDRNMTIVNIFRKEL 278 (285)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEcccccccccCCHHHHHHHHHHHHhhhhhhhcccceEEEEEecCCchHHHHHHHHH
Confidence 4678888999999999999999999999999999999999999998887654 47889999999855 689999988
Q ss_pred HHH
Q 029924 180 KEL 182 (185)
Q Consensus 180 ~~~ 182 (185)
+.+
T Consensus 279 e~f 281 (285)
T COG4295 279 EYF 281 (285)
T ss_pred Hhh
Confidence 765
No 23
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=97.42 E-value=0.0023 Score=56.82 Aligned_cols=115 Identities=18% Similarity=0.215 Sum_probs=87.3
Q ss_pred CCCCCCcEEEccCCCCCC-CeEEEecCCC-cCCCC-ChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCH-----
Q 029924 70 VRCPPGEARITPGFKLPV-SHVIHTVGPV-FNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP----- 141 (185)
Q Consensus 70 ~~~~~G~~~~T~~~~L~~-k~IiH~v~P~-~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~----- 141 (185)
..+.+|++++|.-.||.. .-|+|.|.-. .+.+. .+..-+-..+||+|+.|..+++.+|.+|++-+....-..
T Consensus 370 ~~l~~gd~yitrhsnl~~~~vvfhlv~d~~~~~~~~~~r~~~~~glrnil~~~~~~~i~t~~iplll~~~~~e~mt~~wc 449 (510)
T PF10154_consen 370 STLKPGDFYITRHSNLSDVHVVFHLVVDDSLRSSNINSRHPIILGLRNILRTASRYDITTLTIPLLLVHEMSEEMTIPWC 449 (510)
T ss_pred CcCCCCceEEecccCcccceEEEEEEecCccccCCCCCcChHHHHHHHHHHHHHHcCCCeeeehhhhcCccchhccHHHH
Confidence 456899999999999974 6688988532 22222 455678889999999999999999999999887543322
Q ss_pred HHHHHHHHHHHHHHhc--------CCCeEEEEecC---hHHHHHHHHHHHHHhc
Q 029924 142 DEAATIAISTVKEFAN--------DFKEVHFILFT---DDIYNVWLKKAKELLQ 184 (185)
Q Consensus 142 ~~~a~~~l~~i~~~~~--------~l~~V~~v~~~---~~~~~~f~~~~~~~~~ 184 (185)
-+=|+..++.++-|+- ..+.|.|++-+ ++.+..+...++..|.
T Consensus 450 ~~Raelv~k~vkg~~~e~~~~~~~~~~tvqf~~P~~~~~~~f~~~~~~~~~~fr 503 (510)
T PF10154_consen 450 LKRAELVFKCVKGFMMEMASWGGGESRTVQFLLPQGISDEMFTQLSNMLPSIFR 503 (510)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCccceeEEEeCCCCCCHHHHHHHHhhchhhhc
Confidence 2346777888888872 24689998765 4678899999888873
No 24
>PHA00684 hypothetical protein
Probab=81.16 E-value=16 Score=26.56 Aligned_cols=49 Identities=10% Similarity=0.127 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHH
Q 029924 104 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTV 152 (185)
Q Consensus 104 ~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i 152 (185)
+.+.++..+..-+..|.++--.+.-+..||||+.||..++.|....++.
T Consensus 54 ~l~~I~~~V~~Fi~ya~~hp~~~F~VT~IGCGiAG~~~~eIAplF~~a~ 102 (128)
T PHA00684 54 SLPDIGAAVNRFIAYATAHPHLNFQVTRVGCGLAGHLDADIAPMFRDAP 102 (128)
T ss_pred cHHHHHHHHHHHHHHHHhCCCcEEEeeeeccccccCCHHHHHHHHhcCC
Confidence 4678999999999999999999999999999999999999998876543
No 25
>PHA03033 hypothetical protein; Provisional
Probab=78.85 E-value=7.8 Score=28.24 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=47.9
Q ss_pred EEEEEEccccccccCCCCcEEEEccCCCCCCCch-----hh--hhCHHHHHHHhhccccCCCCCCCCCcEEEccCCCCCC
Q 029924 15 SLKISKGDISRWCVDRSSDAIVSPTNEILLLGGF-----TA--AAGPDLQKACYQIPEAQPRVRCPPGEARITPGFKLPV 87 (185)
Q Consensus 15 ~i~i~~GDI~~~~~~~~~D~IVn~an~~l~~~~g-----~~--~~G~~l~~e~~~~~~~~~~~~~~~G~~~~T~~~~L~~ 87 (185)
++.-+.|+|.+.-.+.+...++.....++.+|.| ++ .+| .++.++. ...+|++.+-.-. -
T Consensus 2 ~i~eIng~~~DLFS~p~~~sLaHCIsAD~~MGaGIA~v~FKkkyg~---V~eLk~Q-------kk~~GeVAvLk~d---~ 68 (142)
T PHA03033 2 KIEYINENIWDFLSDDDNINIISFISADFILCKDDCFIYIKKKYNS---IKELKKQ-------KKKKGEVAYIYKN---N 68 (142)
T ss_pred ceEEecCcchhhhcCCCcceEeeeehhhhhcCCChhhhhHHHHhCC---HHHHHhh-------ccCCCeEEEEecC---C
Confidence 4666889666554444567888888888899988 22 333 2334433 3456777654433 3
Q ss_pred CeEEEecCCCcCCC
Q 029924 88 SHVIHTVGPVFNFH 101 (185)
Q Consensus 88 k~IiH~v~P~~~~~ 101 (185)
|||+..++-.|-+.
T Consensus 69 RyIYYLITKdyie~ 82 (142)
T PHA03033 69 KYIIYIIIADYIED 82 (142)
T ss_pred EEEEEEEeHHHHHH
Confidence 89999998877554
No 26
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=61.17 E-value=21 Score=30.40 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=31.4
Q ss_pred CCCeEEEecCCCcCCCCC-hHHHH---HHHHHHHHHHHHHcC-cceeeecc
Q 029924 86 PVSHVIHTVGPVFNFHCN-PEDIL---RSAYKNCLSVGKANN-IQYIAFPA 131 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~~~-~~~~L---~~~~~~~L~~a~~~~-~~SIafP~ 131 (185)
+|++|||++.|.-....+ +.+.+ -+...|+|+.|.+.+ ++.|.+..
T Consensus 78 gcdgVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TS 128 (327)
T KOG1502|consen 78 GCDGVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTS 128 (327)
T ss_pred CCCEEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEec
Confidence 399999999996544332 22333 366778888888766 77777743
No 27
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=57.61 E-value=33 Score=28.14 Aligned_cols=45 Identities=22% Similarity=0.384 Sum_probs=30.1
Q ss_pred CCCeEEEecCCCcCCCC-ChH---HHHHHHHHHHHHHHHHcCcceeeec
Q 029924 86 PVSHVIHTVGPVFNFHC-NPE---DILRSAYKNCLSVGKANNIQYIAFP 130 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~~-~~~---~~L~~~~~~~L~~a~~~~~~SIafP 130 (185)
.|+.|||++.|.-..+. ..+ ..=-...+++|+.|.+.+++.+.+.
T Consensus 66 g~d~V~H~Aa~~~~~~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVyt 114 (280)
T PF01073_consen 66 GVDVVFHTAAPVPPWGDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYT 114 (280)
T ss_pred CCceEEEeCccccccCcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEE
Confidence 37899999987422221 122 1223678899999999999877663
No 28
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=53.58 E-value=1e+02 Score=25.85 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
...++++++.|.+.|++.|++=++|+.++.=|.+++...
T Consensus 97 ~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~L 135 (296)
T PRK14827 97 EAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFL 135 (296)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHH
Confidence 456778888889999999999999999999999987544
No 29
>KOG4506 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.95 E-value=19 Score=31.34 Aligned_cols=65 Identities=20% Similarity=0.180 Sum_probs=44.6
Q ss_pred CCCCCcEEEccCCCCCC-CeEEEecCC-CcCCCC-ChHHHHHHHHHHHHHHHHHcCcceeeecccccC
Q 029924 71 RCPPGEARITPGFKLPV-SHVIHTVGP-VFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAFPAISCG 135 (185)
Q Consensus 71 ~~~~G~~~~T~~~~L~~-k~IiH~v~P-~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG 135 (185)
.+-+|++.++....+.- ..++|.+.- ...++. ++..---..++|+++.|..+++++|.+|+|--.
T Consensus 416 nllP~eal~qd~sc~seihiafHL~VDd~lkS~eInaR~P~iaGlRNIiktaar~d~sTIhIPLLLid 483 (598)
T KOG4506|consen 416 NLLPGEALIQDHSCLSEIHIAFHLCVDDHLKSGEINARDPAIAGLRNIIKTAARHDISTIHIPLLLID 483 (598)
T ss_pred hcCchhhhhcCccccchhheeeEeeehhhhhcCCccCcCcHHHHHHHHHHHHHhcCCceeeeeeEEec
Confidence 46679999888877653 346676542 223332 222233467899999999999999999998643
No 30
>PLN02214 cinnamoyl-CoA reductase
Probab=50.94 E-value=31 Score=28.88 Aligned_cols=41 Identities=20% Similarity=0.380 Sum_probs=27.9
Q ss_pred CCeEEEecCCCcCCCCChHHHHH---HHHHHHHHHHHHcCcceeeec
Q 029924 87 VSHVIHTVGPVFNFHCNPEDILR---SAYKNCLSVGKANNIQYIAFP 130 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~~~~L~---~~~~~~L~~a~~~~~~SIafP 130 (185)
++.|||+++|.... ....+. ....++++.|.+.+++.+.+.
T Consensus 82 ~d~Vih~A~~~~~~---~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~ 125 (342)
T PLN02214 82 CDGVFHTASPVTDD---PEQMVEPAVNGAKFVINAAAEAKVKRVVIT 125 (342)
T ss_pred CCEEEEecCCCCCC---HHHHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 68999999986432 222232 456778888888888777654
No 31
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=50.36 E-value=33 Score=27.68 Aligned_cols=49 Identities=10% Similarity=0.053 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
.=...++++++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 34 ~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm-~L~~~~l 82 (230)
T PRK14837 34 EGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLM-FLIADYL 82 (230)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH-HHHHHHH
Confidence 334667788888889999999999999999999999987543 3333333
No 32
>CHL00194 ycf39 Ycf39; Provisional
Probab=49.64 E-value=1.3e+02 Score=24.72 Aligned_cols=43 Identities=19% Similarity=0.149 Sum_probs=28.6
Q ss_pred CCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeee
Q 029924 87 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 129 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIaf 129 (185)
++.|||++++.|.........=.....++++.|.+.|++.+.+
T Consensus 65 ~d~Vi~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~ 107 (317)
T CHL00194 65 VTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIF 107 (317)
T ss_pred CCEEEECCCCCCCCccchhhhhHHHHHHHHHHHHHcCCCEEEE
Confidence 6899999876654322111111345678889999999987766
No 33
>cd06155 eu_AANH_C_1 A group of hypothetical eukaryotic proteins, characterized by the presence of an adenine nucleotide alpha hydrolase (AANH)-like domain located N-terminal to two distinctly different YjgF-YER057c-UK114-like domains. This CD contains the first of these domains. The YjgF-YER057c-UK114 protein family is a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=46.63 E-value=91 Score=21.20 Aligned_cols=43 Identities=14% Similarity=0.092 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHhc-------CCCeEEEEecChHHHHHHHHHHHHHhc
Q 029924 142 DEAATIAISTVKEFAN-------DFKEVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 142 ~~~a~~~l~~i~~~~~-------~l~~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
+.-++.+++.|+..++ .+-++.+.+.|.+.+..+.+...++|.
T Consensus 25 ~~Q~~~v~~ni~~~L~~aG~~~~dVv~~~iyl~d~~~~~~~n~~~~~~f~ 74 (101)
T cd06155 25 EEQMESIFSKLREILQSNGLSLSDILYVTLYLRDMSDFAEVNSVYGTFFD 74 (101)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHEEEEEEEECCHHHHHHHHHHHHHHcC
Confidence 3344444555555443 223555666778889999999998884
No 34
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=45.25 E-value=44 Score=26.86 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...++++++.|.+.|++.+++=++|+.++.=|++++...| +-+.+++
T Consensus 29 ~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm-~L~~~~l 75 (226)
T TIGR00055 29 VKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLM-ELFEKKL 75 (226)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHH-HHHHHHH
Confidence 4567778888889999999999999999999999986543 4444443
No 35
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=45.13 E-value=46 Score=26.60 Aligned_cols=47 Identities=11% Similarity=0.144 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...+++++..|.+.|++.+++=++|+.++.=|++++... ++-+..++
T Consensus 30 ~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~L-m~l~~~~l 76 (221)
T cd00475 30 AEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFL-MELFRDVL 76 (221)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHH-HHHHHHHH
Confidence 456677888888999999999999999999999998644 34444443
No 36
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=44.87 E-value=1.5e+02 Score=25.47 Aligned_cols=45 Identities=20% Similarity=0.153 Sum_probs=29.4
Q ss_pred CCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeec
Q 029924 86 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFP 130 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP 130 (185)
+++.|||++++.+.........-.....++++.|.+.|.+.+.+-
T Consensus 136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478999998875433222122223456788898998998877663
No 37
>PRK07475 hypothetical protein; Provisional
Probab=43.00 E-value=87 Score=25.21 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=56.7
Q ss_pred CCCCCcEEEccCCCCCCCeEEEecC---CCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeeccccc---------CCCC
Q 029924 71 RCPPGEARITPGFKLPVSHVIHTVG---PVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISC---------GVSQ 138 (185)
Q Consensus 71 ~~~~G~~~~T~~~~L~~k~IiH~v~---P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~t---------G~~g 138 (185)
+..+|++.--..+ ++.-.++.+- |.---. .....+...+.++.+..+..|.+.|++|+ ++ ...+
T Consensus 26 p~~pgd~~~~~t~--~~pv~~~~v~g~~~~~~~~-~~~~~~~~~l~~aa~~L~~~G~d~I~~~C-gt~~~~~~~l~~~~~ 101 (245)
T PRK07475 26 PRIPGDVGNAATW--PFPVRYKVVRGATPERVVE-GDDPSLLDAFVAAARELEAEGVRAITTSC-GFLALFQRELAAALG 101 (245)
T ss_pred CCCCCCCCCcccC--CcCEEEEeeCCCCHHHHhc-CCCccHHHHHHHHHHHHHHcCCCEEEech-HHHHHHHHHHHHHcC
Confidence 3456777544444 3344445442 211000 11234566667777777788999999998 32 2345
Q ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEecChHH
Q 029924 139 YPPDEAATIAISTVKEFANDFKEVHFILFTDDI 171 (185)
Q Consensus 139 ~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~ 171 (185)
.|.-..+...+..++......++|-++..+...
T Consensus 102 VPv~~ss~~~v~~l~~~~~~~~kIGILtt~~t~ 134 (245)
T PRK07475 102 VPVATSSLLQVPLIQALLPAGQKVGILTADASS 134 (245)
T ss_pred CCEeccHHHHHHHHHHhccCCCeEEEEeCCchh
Confidence 666666666666666655445788888777763
No 38
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=42.87 E-value=2.1e+02 Score=24.36 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=23.5
Q ss_pred CCCcEEEEEEcccccccc------CCCCcEEEEccCCCC
Q 029924 11 STKTSLKISKGDISRWCV------DRSSDAIVSPTNEIL 43 (185)
Q Consensus 11 ~~~~~i~i~~GDI~~~~~------~~~~D~IVn~an~~l 43 (185)
.++....+++|||.+.+. .-+.|+|||-|-++.
T Consensus 48 ~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~VvhfAAESH 86 (340)
T COG1088 48 EDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHFAAESH 86 (340)
T ss_pred hcCCCceEEeccccCHHHHHHHHHhcCCCeEEEechhcc
Confidence 346789999999995422 114799999876654
No 39
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.10 E-value=58 Score=26.45 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...++++++.|.+.|++.|++=++|+.++.=|++++... ++-+.+++
T Consensus 38 ~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~L-m~L~~~~l 84 (241)
T PRK14842 38 ANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSI-FGLLVEFI 84 (241)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHH-HHHHHHHH
Confidence 466777888888999999999999999999999988544 44444444
No 40
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.04 E-value=54 Score=26.45 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...++++++.|.+.|++.|++=++|+.++.=|++++...| +-+.+++
T Consensus 34 ~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm-~L~~~~l 80 (233)
T PRK14833 34 VKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLM-KLLKKYL 80 (233)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHH-HHHHHHH
Confidence 4566777788888999999999999999999999886543 4444443
No 41
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=40.10 E-value=56 Score=26.36 Aligned_cols=48 Identities=13% Similarity=0.098 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 155 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~ 155 (185)
.=...++++++.|.+.|++.|++=++|+.++.=|++++...| +-+.++
T Consensus 31 ~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm-~L~~~~ 78 (233)
T PRK14841 31 RGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLM-DLFVQM 78 (233)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHH-HHHHHH
Confidence 334667778888889999999999999999999999986544 333333
No 42
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=38.52 E-value=63 Score=26.41 Aligned_cols=40 Identities=13% Similarity=0.084 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
...++++++.|.+.|++.|++=++|+.++.=|++++...|
T Consensus 52 ~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm 91 (250)
T PRK14840 52 AKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELF 91 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 4567777888889999999999999999999999986554
No 43
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=37.85 E-value=1.2e+02 Score=24.01 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=16.5
Q ss_pred CCeEEEecCC-CcCCCCCh-HHHHHHHHHHHHHHHHHcC
Q 029924 87 VSHVIHTVGP-VFNFHCNP-EDILRSAYKNCLSVGKANN 123 (185)
Q Consensus 87 ~k~IiH~v~P-~~~~~~~~-~~~L~~~~~~~L~~a~~~~ 123 (185)
++.|||++.. +|...+.+ ...=-...+++++.|.+.+
T Consensus 88 v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~ 126 (249)
T PF07993_consen 88 VDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGK 126 (249)
T ss_dssp --EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS
T ss_pred cceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhcc
Confidence 4678888765 44443322 2222356677777776433
No 44
>PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional
Probab=37.65 E-value=95 Score=26.64 Aligned_cols=77 Identities=14% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCcEEEccCCCCCCCeEEEecCCCcCCCC-ChHHHHHHHHHHHHHHHHHcCcceeee--cccccCC-CCCCHHHHHHHHH
Q 029924 74 PGEARITPGFKLPVSHVIHTVGPVFNFHC-NPEDILRSAYKNCLSVGKANNIQYIAF--PAISCGV-SQYPPDEAATIAI 149 (185)
Q Consensus 74 ~G~~~~T~~~~L~~k~IiH~v~P~~~~~~-~~~~~L~~~~~~~L~~a~~~~~~SIaf--P~l~tG~-~g~p~~~~a~~~l 149 (185)
.=.+.+|+++.|-.. .+- ...|.+.. .-...|...+++.++.+...|++.|.+ |+||+|. .+|..+.+.++ +
T Consensus 112 ~VKv~iTGP~tL~~~-~f~--~~~Y~d~~~~la~~ia~~l~~e~~~l~~~gv~~IqIDEP~l~~~~~~~~~~~~~i~A-l 187 (344)
T PRK06052 112 EVRVCVTGPTELYLQ-EFG--GTIYTDILLILAKSVERFVENAIKSAKNFKIKTISIDEPSLGINPEIQFSDDEIISA-L 187 (344)
T ss_pred CeEEEecCHHHHHHH-HcC--CccccchHHHHHHHHHHHHHHHHHHHHHCCCCEEEecCcccccCCccccCHHHHHHH-H
Confidence 344667777666321 111 11333311 224677888888888899999999999 9999996 56676666555 4
Q ss_pred HHHHH
Q 029924 150 STVKE 154 (185)
Q Consensus 150 ~~i~~ 154 (185)
+.+..
T Consensus 188 ~~a~~ 192 (344)
T PRK06052 188 TVAST 192 (344)
T ss_pred HHHHh
Confidence 44433
No 45
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.53 E-value=68 Score=26.04 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...++++++.|.+.|++.|++=++|+.++.=|++++... ++-+.+++
T Consensus 39 ~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~L-m~L~~~~l 85 (239)
T PRK14839 39 VEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGL-MRLLRAYL 85 (239)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHH-HHHHHHHH
Confidence 466777888888999999999999999999999998644 44444443
No 46
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.38 E-value=71 Score=26.16 Aligned_cols=40 Identities=23% Similarity=0.135 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
...++++++.|.+.|++.+++=++|+.++.=|++++...|
T Consensus 48 ~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm 87 (253)
T PRK14832 48 ARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLM 87 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHH
Confidence 4667778888889999999999999999999999886554
No 47
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.17 E-value=75 Score=25.81 Aligned_cols=39 Identities=13% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
...+++++..|.+.|++.|++=++|++++.=|.+++...
T Consensus 44 ~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~l 82 (243)
T PRK14829 44 EPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFL 82 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHH
Confidence 456677788888999999999999999999999877643
No 48
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.61 E-value=75 Score=25.82 Aligned_cols=49 Identities=12% Similarity=0.116 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
.=...++++++.|.+.|++.|++=++|+.++.=|++++... ++-+.+++
T Consensus 38 ~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~L-m~l~~~~l 86 (242)
T PRK14838 38 AGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAAL-MSLLLDSI 86 (242)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHH-HHHHHHHH
Confidence 33466777888888999999999999999999999888544 44444444
No 49
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=36.22 E-value=2.5e+02 Score=24.74 Aligned_cols=56 Identities=20% Similarity=0.252 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCcceeee-cccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe
Q 029924 109 RSAYKNCLSVGKANNIQYIAF-PAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFIL 166 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIaf-P~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~ 166 (185)
.+.+++.|+.|.+.|+..|.| |-- .....+.+.+-+.+.+++.+-+..-..|.+++
T Consensus 217 v~~~~~eL~rA~~LGa~~VV~HPGs--~~~~~~~ee~i~~i~e~L~~~la~~~gV~IlL 273 (413)
T PTZ00372 217 YDAFLDDLQRCEQLGIKLYNFHPGS--TVGQCSKEEGIKNIADCINKAHEETKSVIIVL 273 (413)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc--CCCCCCHHHHHHHHHHHHHHHHhCcCCCEEEE
Confidence 567888999999999999999 432 22344556677777777666543222354444
No 50
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.76 E-value=84 Score=25.29 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...++++++.|.+.|++.|++=++|+.++.=|.+++... ++-+.+++
T Consensus 23 ~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~L-m~l~~~~l 69 (229)
T PRK10240 23 AKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSAL-MELFVWAL 69 (229)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHH-HHHHHHHH
Confidence 355677778888899999999999999999998888543 44444443
No 51
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=35.68 E-value=72 Score=26.66 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCeEEEecCCCcCCCC--ChHHHH---HHHHHHHHHHHHHcCcceeeecc
Q 029924 87 VSHVIHTVGPVFNFHC--NPEDIL---RSAYKNCLSVGKANNIQYIAFPA 131 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~--~~~~~L---~~~~~~~L~~a~~~~~~SIafP~ 131 (185)
+++|||.++....... +..... -....++|+.|.+.+++.+.++.
T Consensus 91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~S 140 (348)
T PRK15181 91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAA 140 (348)
T ss_pred CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEee
Confidence 6899999975322111 122222 24566889999999998888764
No 52
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.31 E-value=75 Score=25.90 Aligned_cols=39 Identities=23% Similarity=0.124 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
...+++++..|.+.|++.|++=++|+.++.=|.+++...
T Consensus 50 ~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~L 88 (249)
T PRK14831 50 VDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFL 88 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHH
Confidence 456677888888999999999999999999999887533
No 53
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=35.21 E-value=90 Score=25.47 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
...+++++..|.+.|++.|++=++|+.++.=|.+++...
T Consensus 44 ~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~L 82 (249)
T PRK14834 44 VEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDL 82 (249)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHH
Confidence 456677778888899999999999999999999888644
No 54
>cd06154 YjgF_YER057c_UK114_like_6 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=35.17 E-value=1.4e+02 Score=20.88 Aligned_cols=51 Identities=6% Similarity=-0.024 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029924 104 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 104 ~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 183 (185)
-+.+.++++.|+.....+.|.+ .+ .+-++.+.+.+.+.+..+.+.+.++|
T Consensus 42 ~~~Q~~~~~~ni~~~L~~aG~~---------------~~---------------dVvk~~vyl~d~~~~~~~~~~~~~~f 91 (119)
T cd06154 42 AYEQTRQCLEIIEAALAEAGAS---------------LE---------------DVVRTRMYVTDIADFEAVGRAHGEVF 91 (119)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---------------HH---------------HEEEEEEEECCHHHHHHHHHHHHHHc
Confidence 4677888888877766654421 11 22245555566777888888888887
Q ss_pred c
Q 029924 184 Q 184 (185)
Q Consensus 184 ~ 184 (185)
.
T Consensus 92 ~ 92 (119)
T cd06154 92 G 92 (119)
T ss_pred C
Confidence 4
No 55
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.02 E-value=60 Score=23.95 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=28.5
Q ss_pred CCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeee
Q 029924 86 PVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF 129 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIaf 129 (185)
+++.|||+++|.+.. ...++++++.+.+.+.+.+.+
T Consensus 60 ~~d~vi~~~~~~~~~--------~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 60 GADAVIHAAGPPPKD--------VDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TSSEEEECCHSTTTH--------HHHHHHHHHHHHHTTSSEEEE
T ss_pred hcchhhhhhhhhccc--------cccccccccccccccccccee
Confidence 379999999887641 667788888888889887776
No 56
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=34.46 E-value=75 Score=26.20 Aligned_cols=42 Identities=21% Similarity=0.146 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
.=-..+.++|+.|.+.|++.|++=++|..+|.=|++++-..|
T Consensus 64 aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM 105 (271)
T KOG1602|consen 64 AGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLM 105 (271)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHH
Confidence 334567788999999999999999999999999998875444
No 57
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=33.93 E-value=92 Score=25.51 Aligned_cols=40 Identities=10% Similarity=0.148 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
...+.++++.|.+.|++.|++=++|+.++.=|.+++...|
T Consensus 57 ~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm 96 (256)
T PRK14828 57 AAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLL 96 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHH
Confidence 4567778888889999999999999999999998886554
No 58
>cd00448 YjgF_YER057c_UK114_family YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.44 E-value=1.5e+02 Score=19.75 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=16.9
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029924 161 EVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 161 ~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
++.+.+.+.+.+..+.+..+++|.
T Consensus 57 ~~~~yv~~~~~~~~~~~~~~~~~~ 80 (107)
T cd00448 57 KVTVYLTDMADFAAVNEVYDEFFG 80 (107)
T ss_pred EEEEEEecHHHHHHHHHHHHHHhC
Confidence 455555667778888888888774
No 59
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=33.18 E-value=1.6e+02 Score=20.06 Aligned_cols=24 Identities=4% Similarity=-0.130 Sum_probs=17.9
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029924 161 EVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 161 ~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
++.+.+.|.+.+..+.+.+.++|.
T Consensus 54 k~~vyl~d~~~~~~~~~~~~~~f~ 77 (105)
T cd06150 54 SATIWLADMADFAAMNAVWDAWVP 77 (105)
T ss_pred EEEEEEccHHHHHHHHHHHHHHcC
Confidence 455666677788888888888874
No 60
>PF01042 Ribonuc_L-PSP: Endoribonuclease L-PSP; InterPro: IPR006175 This domain is found in endoribonuclease, that is active on single-stranded mRNA and inhibits protein synthesis by cleavage of mRNA []. Previously it was thought to inhibit protein synthesis initiation []. This endoribonuclease may also be involved in the regulation of purine biosynthesis []. ; PDB: 3GTZ_B 3V4D_E 1J7H_A 3R0P_D 2IG8_A 1QD9_B 3L7Q_E 3VCZ_A 3QUW_A 2EWC_K ....
Probab=33.03 E-value=1.6e+02 Score=20.56 Aligned_cols=25 Identities=16% Similarity=0.038 Sum_probs=19.0
Q ss_pred CeEEEEecChHHHHHHHHHHHHHhc
Q 029924 160 KEVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 160 ~~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
-++.+.+.+.+.+..+.+.++.+|.
T Consensus 67 v~~~~yl~d~~~~~~~~~v~~~~f~ 91 (121)
T PF01042_consen 67 VKVTVYLTDMSDFPAVNEVWKEFFP 91 (121)
T ss_dssp EEEEEEESSGGGHHHHHHHHHHHST
T ss_pred eeeeehhhhhhhhHHHHHHHHHHhc
Confidence 3566666777778888888888884
No 61
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.82 E-value=96 Score=25.71 Aligned_cols=39 Identities=15% Similarity=0.036 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHH
Q 029924 109 RSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATI 147 (185)
Q Consensus 109 ~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~ 147 (185)
...+.++++.|.+.|++.|++=++|+.++.=|++++...
T Consensus 71 ~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~L 109 (275)
T PRK14835 71 VQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETL 109 (275)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHH
Confidence 456677788888999999999999999999999888655
No 62
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=32.73 E-value=84 Score=26.70 Aligned_cols=42 Identities=12% Similarity=0.054 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
.=...++++++.|.+.|++.+++=++|+.++.=|++++.-.|
T Consensus 47 ~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm 88 (322)
T PTZ00349 47 MGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLF 88 (322)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHH
Confidence 334677788888999999999999999999999999986554
No 63
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=32.47 E-value=2.9e+02 Score=22.96 Aligned_cols=65 Identities=9% Similarity=0.036 Sum_probs=42.4
Q ss_pred CCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhc
Q 029924 87 VSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFAN 157 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~ 157 (185)
+.|+|+...|.- ...+.=.+++...++.|...|++.|.|=+=+. .+-+++++-+.+.+++.+-++
T Consensus 68 ApYlINl~s~~~----e~~ekS~~~l~~e~~r~~~lG~~~lv~HpG~~--~~~~~e~~l~~i~~~Ln~~~~ 132 (280)
T COG0648 68 APYLINLASPEK----EKVEKSIERLIDEIDRCEQLGAKLLVFHPGSY--LGQGKEEGLNRIAEALNELLE 132 (280)
T ss_pred cceeecCCCCCH----HHHHHHHHHHHHHHHHHHHcCCcEEEECCccc--cCCCHHHHHHHHHHHHHHHhh
Confidence 578888877741 11233356667777888999999999943111 223378887777777766553
No 64
>TIGR00004 endoribonuclease L-PSP, putative. This protein was described initially as an inhibitor of protein synthesis intiation but is now viewed as an endoribonuclease active on single-stranded mRNA. The cleavage of mRNA is responsible for the inhibition of protein synthesis. A role in purine regulation has also been suggested.
Probab=32.45 E-value=1.6e+02 Score=20.68 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=16.3
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029924 161 EVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 161 ~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
++.+.+.+.+.+..+.+.+.++|.
T Consensus 73 ~~~vyv~~~~~~~~~~~~~~~~f~ 96 (124)
T TIGR00004 73 KTTVFLTDLNDFAEVNEVYGQYFD 96 (124)
T ss_pred EEEEEEeChHHHHHHHHHHHHHcC
Confidence 444445566778888888887774
No 65
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=32.44 E-value=73 Score=22.17 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=31.8
Q ss_pred CeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecc
Q 029924 88 SHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPA 131 (185)
Q Consensus 88 k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~ 131 (185)
-.|.|+..|.|-.++- .=+..+..+++.|.+.|++-|.+++
T Consensus 40 i~i~HT~V~d~lrGqG---ia~~L~~~al~~ar~~g~kiiP~Cs 80 (99)
T COG2388 40 IIIDHTYVPDELRGQG---IAQKLVEKALEEAREAGLKIIPLCS 80 (99)
T ss_pred EEEecCcCCHHHcCCc---HHHHHHHHHHHHHHHcCCeEcccch
Confidence 3677999998877652 4456678899999999999887755
No 66
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=32.44 E-value=81 Score=25.06 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 029924 110 SAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 155 (185)
Q Consensus 110 ~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~ 155 (185)
+.++++++.|.+.|++.|++=++|+.++.=|++++...| +.+.++
T Consensus 25 ~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm-~l~~~~ 69 (223)
T PF01255_consen 25 EKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALM-DLFERY 69 (223)
T ss_dssp HHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHH-HHHHHH
Confidence 455677778888999999999999999999999985543 333333
No 67
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=32.30 E-value=1.5e+02 Score=24.03 Aligned_cols=44 Identities=16% Similarity=0.335 Sum_probs=27.0
Q ss_pred CCeEEEecCCCcCCCCChH-HHHH---HHHHHHHHHHHHc-Ccceeeec
Q 029924 87 VSHVIHTVGPVFNFHCNPE-DILR---SAYKNCLSVGKAN-NIQYIAFP 130 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~~-~~L~---~~~~~~L~~a~~~-~~~SIafP 130 (185)
+++|||+++|......... ..++ ....++|+.|.+. +.+.+.+.
T Consensus 77 ~d~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~ 125 (322)
T PLN02662 77 CEGVFHTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVT 125 (322)
T ss_pred CCEEEEeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEc
Confidence 6899999988543221221 2222 4556777777765 77777653
No 68
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=31.76 E-value=40 Score=25.66 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=14.5
Q ss_pred CceeeeEeeeCC-CcEEEEE
Q 029924 1 MTFKVQTLSFST-KTSLKIS 19 (185)
Q Consensus 1 ~~~~~~~~~~~~-~~~i~i~ 19 (185)
||||++++.++| ..+++|+
T Consensus 43 vDfkirTv~i~G~~VkLqIw 62 (198)
T KOG0079|consen 43 VDFKIRTVDINGDRVKLQIW 62 (198)
T ss_pred eeEEEEEeecCCcEEEEEEe
Confidence 789999999976 5555555
No 69
>PF09039 HTH_Tnp_Mu_2: Mu DNA binding, I gamma subdomain; InterPro: IPR015126 This domain is responsible for binding the DNA attachment sites at each end of the Mu genome. They adopt a secondary structure comprising a four helix bundle tightly packed around a hydrophobic core consisting of aliphatic and aromatic amino acid residues. Helices 1 and 2 are oriented antiparallel to each other. Helix 3 crosses helices 1 and 2 at angles of 60 and 120 degrees, respectively. Excluding the C-terminal helix 4, the fold of the I-gamma subdomain is remarkably similar to that of the homeodomain family of helix-turn-helix DNA-binding proteins, although their amino acid sequences are completely unrelated []. ; PDB: 2EZL_A 2EZH_A 2EZI_A 2EZK_A.
Probab=31.36 E-value=35 Score=24.10 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHcCcceeeecccc
Q 029924 106 DILRSAYKNCLSVGKANNIQYIAFPAIS 133 (185)
Q Consensus 106 ~~L~~~~~~~L~~a~~~~~~SIafP~l~ 133 (185)
-.+..||+.....|.++|+ .+|+..
T Consensus 49 Ps~~~cyrr~~~~a~~~Gw---~iPS~~ 73 (108)
T PF09039_consen 49 PSFSACYRRLKRAAKENGW---PIPSEK 73 (108)
T ss_dssp --HHHHHHHHHHHHHHHT--------HH
T ss_pred CCHHHHHHHHHHHHHHcCC---CCCCHH
Confidence 3689999999999999997 455544
No 70
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=30.35 E-value=2.7e+02 Score=21.91 Aligned_cols=49 Identities=14% Similarity=0.138 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHh
Q 029924 107 ILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFA 156 (185)
Q Consensus 107 ~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~ 156 (185)
...+.++++++.|.+.|.+.|.++. |......+.++.-+.+.+.+++..
T Consensus 81 ~~~~~~~~~i~~a~~lg~~~i~~~~-g~~~~~~~~~~~~~~~~~~l~~l~ 129 (254)
T TIGR03234 81 EFREGVALAIAYARALGCPQVNCLA-GKRPAGVSPEEARATLVENLRYAA 129 (254)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEECc-CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 4556788999999999999997653 222344556666666666666654
No 71
>PTZ00325 malate dehydrogenase; Provisional
Probab=29.67 E-value=1.7e+02 Score=24.78 Aligned_cols=44 Identities=9% Similarity=0.055 Sum_probs=34.0
Q ss_pred CCCeEEEecCCCcCCCCChHHHHHH---HHHHHHHHHHHcCcceeee
Q 029924 86 PVSHVIHTVGPVFNFHCNPEDILRS---AYKNCLSVGKANNIQYIAF 129 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~~~~~~~L~~---~~~~~L~~a~~~~~~SIaf 129 (185)
.++.|+|++++.-.++..-...|.. .++++++...+.+.+.+.+
T Consensus 76 gaDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~ivi 122 (321)
T PTZ00325 76 GADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVG 122 (321)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 4799999999865544333456666 8899999999999988876
No 72
>KOG3716 consensus Carnitine O-acyltransferase CPTI [Lipid transport and metabolism]
Probab=29.42 E-value=1.1e+02 Score=28.72 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=46.4
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCC---CCCCHHHHHHHHHHHH
Q 029924 98 FNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGV---SQYPPDEAATIAISTV 152 (185)
Q Consensus 98 ~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~---~g~p~~~~a~~~l~~i 152 (185)
|.........++.||...=..+++..+.+++|...|-|. .|.++|-..|.+|+-.
T Consensus 511 wd~p~~~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA 568 (764)
T KOG3716|consen 511 WDIPKECLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLA 568 (764)
T ss_pred ecCChhHHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHH
Confidence 444334567889999999999999999999999999995 7999999999988765
No 73
>PRK11401 putative endoribonuclease L-PSP; Provisional
Probab=29.38 E-value=2.1e+02 Score=20.34 Aligned_cols=24 Identities=4% Similarity=0.081 Sum_probs=17.4
Q ss_pred eEEEEecChHHHHHHHHHHHHHhc
Q 029924 161 EVHFILFTDDIYNVWLKKAKELLQ 184 (185)
Q Consensus 161 ~V~~v~~~~~~~~~f~~~~~~~~~ 184 (185)
++.+.+.|.+.+..+.+.+.++|.
T Consensus 73 k~~vyl~d~~~~~~~~~v~~~~f~ 96 (129)
T PRK11401 73 KMTVFITDLNDFATINEVYKQFFD 96 (129)
T ss_pred EEEEEEccHHHHHHHHHHHHHHhC
Confidence 455555667778888888888874
No 74
>TIGR03610 RutC pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.
Probab=29.28 E-value=1.9e+02 Score=20.65 Aligned_cols=51 Identities=16% Similarity=0.021 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029924 104 PEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 104 ~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 183 (185)
-+.+.+++++|+.....+.|.+ .+ ++-++.+.+.|.+.+..+.+...++|
T Consensus 48 ~~~Q~~~~l~ni~~iL~~aG~~---------------~~---------------dvv~~~iyl~d~~~~~~~~~~~~~~f 97 (127)
T TIGR03610 48 AAAQTRHVLETIKSVIETAGGT---------------MD---------------DVTFNHIFIRDWADYAAINEVYAEYF 97 (127)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC---------------HH---------------HEEEEEEEEcCHHHHHHHHHHHHHHc
Confidence 4567777777776665554422 21 22355566667778888888888887
Q ss_pred c
Q 029924 184 Q 184 (185)
Q Consensus 184 ~ 184 (185)
.
T Consensus 98 ~ 98 (127)
T TIGR03610 98 P 98 (127)
T ss_pred C
Confidence 4
No 75
>PRK10810 anti-sigma28 factor FlgM; Provisional
Probab=28.44 E-value=74 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=22.6
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhc
Q 029924 132 ISCGVSQYPPDEAATIAISTVKEFAN 157 (185)
Q Consensus 132 l~tG~~g~p~~~~a~~~l~~i~~~~~ 157 (185)
|..|.|.++.+..|..|++..+++++
T Consensus 71 I~~G~y~vD~~kIAd~Ll~~a~ell~ 96 (98)
T PRK10810 71 IRNGELKMDTGKIADALIKEAQSDLQ 96 (98)
T ss_pred HHcCCcccCHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999998875
No 76
>PF15162 DUF4580: Domain of unknown function (DUF4580)
Probab=27.73 E-value=1.4e+02 Score=22.64 Aligned_cols=57 Identities=11% Similarity=0.279 Sum_probs=35.0
Q ss_pred ceeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEE----ecChHHHHHHHHHHHHHh
Q 029924 125 QYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFI----LFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 125 ~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v----~~~~~~~~~f~~~~~~~~ 183 (185)
.||.||+=|..-.-.+..++-. ++..|.+|.+..+.=+++ +.++++|....+. .+++
T Consensus 40 ~svIFpLSGvAFLL~d~~~~~~-~l~ki~kF~~ihrNsflvL~aalhg~~ew~~m~~i-qRFL 100 (162)
T PF15162_consen 40 GSVIFPLSGVAFLLMDAQECFM-FLAKIEKFIDIHRNSFLVLSAALHGPEEWKLMFRI-QRFL 100 (162)
T ss_pred CeEEEEcccceeeEeccHHHhh-HHHHHHHHHhccCCceEEeehhhcCHHHHHHHHHH-HHHh
Confidence 4777777766666666666655 777777777655443333 3445567766666 4444
No 77
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=27.07 E-value=3.7e+02 Score=23.62 Aligned_cols=104 Identities=9% Similarity=0.041 Sum_probs=57.4
Q ss_pred EccCCCCCCCeEEEecCC--CcCCCC------------ChHHHHHHHHHHHHHHHHHcCc--ceeeecccccCCCCCCHH
Q 029924 79 ITPGFKLPVSHVIHTVGP--VFNFHC------------NPEDILRSAYKNCLSVGKANNI--QYIAFPAISCGVSQYPPD 142 (185)
Q Consensus 79 ~T~~~~L~~k~IiH~v~P--~~~~~~------------~~~~~L~~~~~~~L~~a~~~~~--~SIafP~l~tG~~g~p~~ 142 (185)
+.+...++.++.+=+.|- .+.+-. ++...|++-+.++++.|....- .-+.|-..|.|-.|+...
T Consensus 92 ~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~IvGgG~TGVElA 171 (405)
T COG1252 92 LADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELA 171 (405)
T ss_pred eCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEEECCChhHHHHH
Confidence 333467889998877762 222111 1245667777788898884433 456677789888876443
Q ss_pred HHHHHHHHHHHH-HhcCCC--eEEEEecChHHHHHHHHHHHHH
Q 029924 143 EAATIAISTVKE-FANDFK--EVHFILFTDDIYNVWLKKAKEL 182 (185)
Q Consensus 143 ~~a~~~l~~i~~-~~~~l~--~V~~v~~~~~~~~~f~~~~~~~ 182 (185)
-...-.+..+.. |..... +|.+|--.+.++..|...+.++
T Consensus 172 geL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~ 214 (405)
T COG1252 172 GELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKY 214 (405)
T ss_pred HHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHH
Confidence 332222332222 221122 5666655566666655555443
No 78
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=27.00 E-value=44 Score=29.64 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=19.9
Q ss_pred CcEEEEEEccccccccCCCCcEEEEcc
Q 029924 13 KTSLKISKGDISRWCVDRSSDAIVSPT 39 (185)
Q Consensus 13 ~~~i~i~~GDI~~~~~~~~~D~IVn~a 39 (185)
+.+|+|++||+.+++...++|+||.--
T Consensus 240 ~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 240 GDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp TTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred CCeEEEEeCcccCCCCCCceeEEEEec
Confidence 357999999999998766789999854
No 79
>PRK06199 ornithine cyclodeaminase; Validated
Probab=26.78 E-value=2.4e+02 Score=24.37 Aligned_cols=68 Identities=6% Similarity=0.028 Sum_probs=46.0
Q ss_pred HHHHHHHHHH--HHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHHh
Q 029924 107 ILRSAYKNCL--SVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEFANDFKEVHFILFTDDIYNVWLKKAKELL 183 (185)
Q Consensus 107 ~L~~~~~~~L--~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~~ 183 (185)
.++.+--.++ +.....+.++++ .||||.- |+..++++......+++|++...+++--+.|.+.+...|
T Consensus 136 a~RTaA~salaa~~LAr~da~~l~--iiG~G~Q-------A~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~ 205 (379)
T PRK06199 136 AYRTGAVPGVGARHLARKDSKVVG--LLGPGVM-------GKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETY 205 (379)
T ss_pred hhHHHHHHHHHHHHhccCCCCEEE--EECCcHH-------HHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc
Confidence 4444444443 222345666776 6888854 455566666655568999999999999999999988665
No 80
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.10 E-value=1.2e+02 Score=24.73 Aligned_cols=50 Identities=14% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 029924 105 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 155 (185)
Q Consensus 105 ~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~ 155 (185)
...-...++++++.|.+.|++.+++=++|+.++.=|.+++... ++-+..+
T Consensus 40 H~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~L-m~l~~~~ 89 (253)
T PRK14836 40 HRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSAL-MELFLKA 89 (253)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHH-HHHHHHH
Confidence 4566778889999999999999999999999999998887544 3344443
No 81
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.58 E-value=2.1e+02 Score=25.42 Aligned_cols=85 Identities=8% Similarity=-0.014 Sum_probs=52.7
Q ss_pred EccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHH---HHHHHHHHHHHHH
Q 029924 79 ITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPD---EAATIAISTVKEF 155 (185)
Q Consensus 79 ~T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~---~~a~~~l~~i~~~ 155 (185)
+..|.+-.|.| |+.|.-++...+ .-+.+.+.++-+ ..+.|++-|.+-..-++.+|.+.. ....-+|+.+.+
T Consensus 150 I~eGCn~~Ctf---CiiP~~RG~~rS-r~~e~Il~ev~~-Lv~~G~kEI~L~gqdv~aYG~D~~~~~~~l~~Ll~~l~~- 223 (437)
T COG0621 150 IQEGCNKFCTF---CIIPYARGKERS-RPPEDILKEVKR-LVAQGVKEIVLTGQDVNAYGKDLGGGKPNLADLLRELSK- 223 (437)
T ss_pred hhcCcCCCCCe---eeeeccCCCccC-CCHHHHHHHHHH-HHHCCCeEEEEEEEehhhccccCCCCccCHHHHHHHHhc-
Confidence 44455555554 555655554422 123334444433 335899999999999999999974 344445666655
Q ss_pred hcCCCeEEEEecCh
Q 029924 156 ANDFKEVHFILFTD 169 (185)
Q Consensus 156 ~~~l~~V~~v~~~~ 169 (185)
.+.+.+|+|-...+
T Consensus 224 I~G~~riR~~~~~P 237 (437)
T COG0621 224 IPGIERIRFGSSHP 237 (437)
T ss_pred CCCceEEEEecCCc
Confidence 55677888866554
No 82
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.56 E-value=1.5e+02 Score=24.23 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHH
Q 029924 105 EDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIA 148 (185)
Q Consensus 105 ~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~ 148 (185)
...-...+.+++..|.+.|++.+++=++|+.++.=|.+++...|
T Consensus 48 h~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm 91 (251)
T PRK14830 48 HKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLM 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHH
Confidence 45666788889999999999999999999999999998887664
No 83
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=24.65 E-value=1.4e+02 Score=24.86 Aligned_cols=94 Identities=15% Similarity=0.194 Sum_probs=52.4
Q ss_pred CcEEEccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeee--cccccCCCCCCHHHHHHHHHHHH
Q 029924 75 GEARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAF--PAISCGVSQYPPDEAATIAISTV 152 (185)
Q Consensus 75 G~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIaf--P~l~tG~~g~p~~~~a~~~l~~i 152 (185)
|..++.-+.+|+++..+|..-|+.-. ...|.+--..--+.|.++|++=+-. |..-++.. ..-+-+-+++-+
T Consensus 119 G~~i~~~Ak~mGAktFVh~sfprhms----~~~l~~Rr~~M~~~C~~lGi~fv~~taPDP~sd~g---v~gaqqfIlE~v 191 (275)
T PF12683_consen 119 GYTIVWAAKKMGAKTFVHYSFPRHMS----YELLARRRDIMEEACKDLGIKFVEVTAPDPTSDVG---VAGAQQFILEDV 191 (275)
T ss_dssp HHHHHHHHHHTT-S-EEEEEETTGGG----SHHHHHHHHHHHHHHHHCT--EEEEEE---SSTCH---HHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCceEEEEechhhcc----hHHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCC---cHHHHHHHHHHH
Confidence 44444556678899999999887533 2344433333345577888776555 55555543 666667788888
Q ss_pred HHHhcCC-CeEEEEecChHHHHHH
Q 029924 153 KEFANDF-KEVHFILFTDDIYNVW 175 (185)
Q Consensus 153 ~~~~~~l-~~V~~v~~~~~~~~~f 175 (185)
-+|++.. +++-|.+.+....+..
T Consensus 192 p~~i~kYGkdtaff~TN~a~~epl 215 (275)
T PF12683_consen 192 PKWIKKYGKDTAFFCTNDAMTEPL 215 (275)
T ss_dssp HHHHHHH-S--EEEESSHHHHHHH
T ss_pred HHHHHHhCCceeEEecCccccHHH
Confidence 8888743 5666666666554433
No 84
>PLN02778 3,5-epimerase/4-reductase
Probab=23.58 E-value=1.5e+02 Score=24.33 Aligned_cols=44 Identities=9% Similarity=0.112 Sum_probs=27.1
Q ss_pred CCCeEEEecCCCcCCC-----CChHHHH---HHHHHHHHHHHHHcCcceeee
Q 029924 86 PVSHVIHTVGPVFNFH-----CNPEDIL---RSAYKNCLSVGKANNIQYIAF 129 (185)
Q Consensus 86 ~~k~IiH~v~P~~~~~-----~~~~~~L---~~~~~~~L~~a~~~~~~SIaf 129 (185)
.+++|||++++..... .+....+ -....++++.|.+.+++-+.+
T Consensus 57 ~~D~ViH~Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~ 108 (298)
T PLN02778 57 KPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNY 108 (298)
T ss_pred CCCEEEECCcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 4799999998753211 0122222 234568888888888875544
No 85
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=23.52 E-value=66 Score=19.65 Aligned_cols=20 Identities=15% Similarity=0.228 Sum_probs=12.3
Q ss_pred cccCCCCCCHHHHHHHHHHH
Q 029924 132 ISCGVSQYPPDEAATIAIST 151 (185)
Q Consensus 132 l~tG~~g~p~~~~a~~~l~~ 151 (185)
|..|.|.++.+..|+.|++.
T Consensus 37 I~~G~Y~vd~~~iA~~ml~~ 56 (57)
T PF04316_consen 37 IASGTYKVDAEKIAEKMLDF 56 (57)
T ss_dssp HHTT-----HHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHhc
Confidence 45689999999999999875
No 86
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=23.40 E-value=2.3e+02 Score=23.04 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=26.4
Q ss_pred CCeEEEecCCCcCCCCCh-HHHHH---HHHHHHHHHHHHc-Ccceeeec
Q 029924 87 VSHVIHTVGPVFNFHCNP-EDILR---SAYKNCLSVGKAN-NIQYIAFP 130 (185)
Q Consensus 87 ~k~IiH~v~P~~~~~~~~-~~~L~---~~~~~~L~~a~~~-~~~SIafP 130 (185)
++.|||+++|......+. ...+. ....++|+.|.+. +++.|.+.
T Consensus 78 ~d~vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~ 126 (322)
T PLN02986 78 CDAVFHTASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILT 126 (322)
T ss_pred CCEEEEeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEe
Confidence 689999999853221111 12232 3446777777764 67777664
No 87
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.48 E-value=2.3e+02 Score=20.89 Aligned_cols=34 Identities=6% Similarity=0.163 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCeEEEEecChHHHHHHHHHHHHH
Q 029924 149 ISTVKEFANDFKEVHFILFTDDIYNVWLKKAKEL 182 (185)
Q Consensus 149 l~~i~~~~~~l~~V~~v~~~~~~~~~f~~~~~~~ 182 (185)
++.|++|+.+-+++.++..+++.+.+..+.+.++
T Consensus 26 ve~ireyi~sA~r~vV~t~N~~K~~aindvlrrf 59 (156)
T COG4019 26 VEKIREYIVSAKRIVVATNNQKKFKAINDVLRRF 59 (156)
T ss_pred HHHHHHHHhccceEEEecCCHHHHHHHHHHHHHh
Confidence 5778888888889999999999999999988765
No 88
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=21.48 E-value=1.8e+02 Score=23.31 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCeEEEecCCC----cCCCCChHH---HHHHHHHHHHHHHHHcCcceeee
Q 029924 86 PVSHVIHTVGPV----FNFHCNPED---ILRSAYKNCLSVGKANNIQYIAF 129 (185)
Q Consensus 86 ~~k~IiH~v~P~----~~~~~~~~~---~L~~~~~~~L~~a~~~~~~SIaf 129 (185)
.++.|||++++. +...+ ... .-.....++++.|.+.+++.+.+
T Consensus 49 ~~d~Vih~A~~~~~~~~~~~~-~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 49 KPTYVILAAAKVGGIHANMTY-PADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred CCCEEEEeeeeecccchhhhC-cHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 358999999763 12111 121 22245778888898888877776
No 89
>PF05028 PARG_cat: Poly (ADP-ribose) glycohydrolase (PARG); InterPro: IPR007724 Poly(ADP-ribose) glycohydrolase (PARG) is a ubiquitously expressed exo- and endoglycohydrolase which mediates oxidative and excitotoxic neuronal death [].; GO: 0004649 poly(ADP-ribose) glycohydrolase activity, 0005975 carbohydrate metabolic process; PDB: 4FC2_D 3UEL_C 3UEK_A.
Probab=21.19 E-value=4.4e+02 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=15.4
Q ss_pred EEEEE-EccccccccCCCCcEEEEccCCCC
Q 029924 15 SLKIS-KGDISRWCVDRSSDAIVSPTNEIL 43 (185)
Q Consensus 15 ~i~i~-~GDI~~~~~~~~~D~IVn~an~~l 43 (185)
.+.+. .|.|.+.. .....|+.||..+
T Consensus 144 ~~~v~~~g~IEd~~---~~~lqVDFANk~I 170 (340)
T PF05028_consen 144 PVEVFHDGRIEDSG---SGCLQVDFANKYI 170 (340)
T ss_dssp -EEEESSS-HHHHT---TTSEEEEEE-SST
T ss_pred CceeecCCccccCC---CCcEEEEEecccc
Confidence 34433 67777662 2478999999975
No 90
>TIGR01578 MiaB-like-B MiaB-like tRNA modifying enzyme, archaeal-type. This clade is a member of a subfamily (TIGR00089) and spans the archaea and eukaryotes. The only archaeal miaB-like genes are in this clade, while eukaryotes have sequences described by this model as well as ones falling within the scope of the MiaB equivalog model.
Probab=21.10 E-value=3.3e+02 Score=23.67 Aligned_cols=85 Identities=8% Similarity=-0.088 Sum_probs=41.8
Q ss_pred cEEEccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCHHHHHHHHHHHHHHH
Q 029924 76 EARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPPDEAATIAISTVKEF 155 (185)
Q Consensus 76 ~~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~~~~a~~~l~~i~~~ 155 (185)
-+.++.+.+..|.| |..|.+++.... ..+++.++++-... +.|++.|.|-...++.+|.+...-...+++.+.+.
T Consensus 136 ~i~isrGC~~~Csf---C~ip~~~G~~rs-r~~e~Vl~Ei~~l~-~~G~~ei~l~g~d~~~yg~d~~~~l~~Ll~~l~~i 210 (420)
T TIGR01578 136 IIPINQGCLGNCSY---CITKHARGKLAS-YPPEKIVEKARQLV-AEGCKEIWITSQDTGAYGRDIGSRLPELLRLITEI 210 (420)
T ss_pred EEEEccCCCCCCCC---CccccCCCCccc-CCHHHHHHHHHHHH-HCCCeEEEEEeeccccccCCCCcCHHHHHHHHHhC
Confidence 34467777777876 222333332211 12233333332222 36999999988877777765322223334444332
Q ss_pred hcCCCeEEEEe
Q 029924 156 ANDFKEVHFIL 166 (185)
Q Consensus 156 ~~~l~~V~~v~ 166 (185)
+....+++-.
T Consensus 211 -~~~~~ir~~~ 220 (420)
T TIGR01578 211 -PGEFRLRVGM 220 (420)
T ss_pred -CCCcEEEEcC
Confidence 2223455543
No 91
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=20.69 E-value=5.9e+02 Score=22.46 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=44.9
Q ss_pred EEEccCCCCCCCeEEEecCCCcCCCCChHHHHHHHHHHHHHHHHHcCcceeeecccccCCCCCCH--HHHHHHHHHHHHH
Q 029924 77 ARITPGFKLPVSHVIHTVGPVFNFHCNPEDILRSAYKNCLSVGKANNIQYIAFPAISCGVSQYPP--DEAATIAISTVKE 154 (185)
Q Consensus 77 ~~~T~~~~L~~k~IiH~v~P~~~~~~~~~~~L~~~~~~~L~~a~~~~~~SIafP~l~tG~~g~p~--~~~a~~~l~~i~~ 154 (185)
+-++.+.+..|.| |..|...+...+ ..+...++++-.. .+.|++.|.|-....+.+|.+. ......+++.+.+
T Consensus 159 i~I~rGC~~~Csf---C~~p~~~G~~rs-r~~e~Il~ei~~l-~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~ 233 (459)
T PRK14338 159 VPIIYGCNMSCSY---CVIPLRRGRERS-RPLAEIVEEVRRI-AARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHE 233 (459)
T ss_pred EEcccCCCCCCCc---CCeeccCCCCcc-CCHHHHHHHHHHH-HHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHh
Confidence 3467788888876 333332222111 1233333333222 3469999999887777777542 3334455565554
Q ss_pred HhcCCCeEEEEec
Q 029924 155 FANDFKEVHFILF 167 (185)
Q Consensus 155 ~~~~l~~V~~v~~ 167 (185)
. ..+..|+|...
T Consensus 234 ~-~gi~~ir~~~~ 245 (459)
T PRK14338 234 I-PGLERLRFLTS 245 (459)
T ss_pred c-CCcceEEEEec
Confidence 2 23456766543
Done!