Query 029925
Match_columns 185
No_of_seqs 102 out of 173
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 05:49:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029925.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029925hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02679 ComA: (2R)-phospho-3- 100.0 1.2E-55 2.6E-60 379.7 11.9 142 13-160 1-143 (244)
2 COG1809 (2R)-phospho-3-sulfola 100.0 2E-50 4.4E-55 344.0 10.5 159 9-178 2-177 (258)
3 TIGR03849 arch_ComA phosphosul 100.0 1.1E-49 2.4E-54 341.5 14.2 127 26-158 1-128 (237)
4 PRK06294 coproporphyrinogen II 96.4 0.0079 1.7E-07 54.3 6.6 90 52-148 57-158 (370)
5 PRK08446 coproporphyrinogen II 96.3 0.014 3.1E-07 52.2 7.4 88 53-145 51-149 (350)
6 PRK05628 coproporphyrinogen II 95.9 0.026 5.5E-07 50.7 6.8 93 52-148 58-163 (375)
7 PRK13209 L-xylulose 5-phosphat 95.7 0.015 3.3E-07 49.3 4.3 58 90-148 11-75 (283)
8 PRK05904 coproporphyrinogen II 95.3 0.062 1.3E-06 48.5 7.3 90 52-146 55-156 (353)
9 TIGR00539 hemN_rel putative ox 95.3 0.045 9.8E-07 49.0 6.4 90 53-145 51-151 (360)
10 PRK07379 coproporphyrinogen II 95.1 0.042 9.1E-07 50.2 5.6 92 52-146 65-168 (400)
11 COG0826 Collagenase and relate 95.1 0.12 2.6E-06 47.1 8.3 92 42-146 15-116 (347)
12 cd06547 GH85_ENGase Endo-beta- 94.9 0.1 2.2E-06 47.3 7.5 89 51-142 30-134 (339)
13 TIGR00538 hemN oxygen-independ 94.9 0.085 1.8E-06 48.8 7.1 90 53-145 102-202 (455)
14 PRK13210 putative L-xylulose 5 94.9 0.06 1.3E-06 45.4 5.6 57 90-147 6-69 (284)
15 cd07944 DRE_TIM_HOA_like 4-hyd 94.8 0.1 2.2E-06 45.4 6.9 108 24-142 72-179 (266)
16 PRK13347 coproporphyrinogen II 94.8 0.11 2.3E-06 48.3 7.4 89 53-145 103-203 (453)
17 PRK08195 4-hyroxy-2-oxovalerat 94.6 0.17 3.8E-06 45.6 8.1 108 24-142 78-185 (337)
18 cd07937 DRE_TIM_PC_TC_5S Pyruv 94.4 0.19 4E-06 43.8 7.6 106 32-142 83-190 (275)
19 PRK09249 coproporphyrinogen II 94.4 0.085 1.9E-06 48.8 5.8 89 53-144 102-201 (453)
20 PRK08208 coproporphyrinogen II 94.4 0.13 2.9E-06 47.3 7.0 91 54-146 92-193 (430)
21 PRK05660 HemN family oxidoredu 94.3 0.094 2E-06 47.5 5.7 92 52-146 57-159 (378)
22 TIGR03217 4OH_2_O_val_ald 4-hy 93.9 0.31 6.7E-06 43.9 8.2 108 24-142 77-184 (333)
23 TIGR03551 F420_cofH 7,8-dideme 93.8 0.73 1.6E-05 41.1 10.4 109 39-148 71-197 (343)
24 PRK06582 coproporphyrinogen II 93.6 0.27 5.8E-06 45.0 7.4 92 51-146 60-163 (390)
25 PRK05799 coproporphyrinogen II 93.6 0.23 5E-06 44.4 6.8 89 53-145 51-150 (374)
26 cd07939 DRE_TIM_NifV Streptomy 93.5 0.3 6.5E-06 41.8 7.1 97 44-142 73-180 (259)
27 TIGR00542 hxl6Piso_put hexulos 93.5 0.13 2.9E-06 43.7 4.9 55 92-147 8-69 (279)
28 PRK09057 coproporphyrinogen II 93.4 0.13 2.8E-06 46.6 5.0 95 52-149 54-159 (380)
29 PRK08599 coproporphyrinogen II 93.4 0.9 1.9E-05 40.8 10.3 89 53-145 51-151 (377)
30 PRK13111 trpA tryptophan synth 93.1 0.42 9.1E-06 41.8 7.4 106 39-151 24-150 (258)
31 cd07943 DRE_TIM_HOA 4-hydroxy- 93.0 0.46 1E-05 40.8 7.5 108 24-142 75-182 (263)
32 TIGR02668 moaA_archaeal probab 92.9 1.6 3.6E-05 37.6 10.9 94 39-145 41-149 (302)
33 PRK08207 coproporphyrinogen II 92.6 0.43 9.4E-06 45.2 7.4 93 52-146 217-322 (488)
34 COG3623 SgaU Putative L-xylulo 92.4 0.34 7.3E-06 43.1 5.9 56 91-147 9-71 (287)
35 COG0159 TrpA Tryptophan syntha 92.3 0.67 1.5E-05 41.2 7.7 110 39-155 29-159 (265)
36 COG2896 MoaA Molybdenum cofact 92.1 0.62 1.3E-05 42.4 7.5 99 39-146 44-154 (322)
37 cd07941 DRE_TIM_LeuA3 Desulfob 92.0 0.55 1.2E-05 40.8 6.8 91 51-142 89-192 (273)
38 PLN02591 tryptophan synthase 91.9 0.71 1.5E-05 40.3 7.3 104 40-150 15-138 (250)
39 TIGR02495 NrdG2 anaerobic ribo 91.9 2.6 5.7E-05 33.7 10.2 98 39-147 48-157 (191)
40 cd03174 DRE_TIM_metallolyase D 91.8 0.15 3.2E-06 42.7 2.9 97 41-142 78-187 (265)
41 PRK11858 aksA trans-homoaconit 91.7 0.54 1.2E-05 42.9 6.7 96 42-142 80-186 (378)
42 PRK00164 moaA molybdenum cofac 91.5 2.6 5.6E-05 37.0 10.5 93 39-144 50-158 (331)
43 PRK09856 fructoselysine 3-epim 91.5 0.51 1.1E-05 39.7 5.8 46 102-147 14-64 (275)
44 cd07940 DRE_TIM_IPMS 2-isoprop 91.3 0.8 1.7E-05 39.4 6.9 99 42-142 74-184 (268)
45 TIGR02109 PQQ_syn_pqqE coenzym 90.9 2.4 5.2E-05 37.5 9.8 96 39-146 38-148 (358)
46 TIGR02660 nifV_homocitr homoci 90.9 0.62 1.3E-05 42.2 6.1 90 51-142 83-183 (365)
47 smart00729 Elp3 Elongator prot 90.6 4.3 9.4E-05 31.3 10.0 87 54-147 52-154 (216)
48 TIGR02666 moaA molybdenum cofa 90.5 3.5 7.6E-05 36.3 10.4 94 39-145 44-154 (334)
49 PRK07094 biotin synthase; Prov 90.4 4.3 9.4E-05 35.5 10.8 85 53-148 86-183 (323)
50 CHL00200 trpA tryptophan synth 90.3 1.1 2.4E-05 39.3 7.0 108 39-153 27-154 (263)
51 PRK09989 hypothetical protein; 90.3 0.62 1.3E-05 39.3 5.3 42 102-147 16-57 (258)
52 PRK13361 molybdenum cofactor b 90.2 3.9 8.4E-05 36.2 10.5 93 39-144 46-154 (329)
53 PF04055 Radical_SAM: Radical 90.1 4 8.7E-05 30.1 9.0 95 39-145 29-142 (166)
54 cd04724 Tryptophan_synthase_al 89.9 2.9 6.3E-05 35.7 9.2 101 41-148 14-134 (242)
55 TIGR03470 HpnH hopanoid biosyn 89.9 3 6.6E-05 37.0 9.6 94 39-147 60-166 (318)
56 TIGR01212 radical SAM protein, 89.8 1.1 2.3E-05 39.6 6.6 96 57-156 81-189 (302)
57 TIGR03234 OH-pyruv-isom hydrox 89.8 0.71 1.5E-05 38.6 5.2 43 102-148 15-57 (254)
58 PF00682 HMGL-like: HMGL-like 89.8 0.43 9.2E-06 39.8 3.9 100 41-142 67-178 (237)
59 TIGR03128 RuMP_HxlA 3-hexulose 89.6 3.5 7.6E-05 33.5 9.1 97 39-150 10-109 (206)
60 PRK09058 coproporphyrinogen II 89.5 0.74 1.6E-05 42.8 5.6 89 53-145 114-214 (449)
61 TIGR03699 mena_SCO4550 menaqui 89.4 3 6.5E-05 36.9 9.1 94 54-148 89-199 (340)
62 PF00290 Trp_syntA: Tryptophan 89.2 1.9 4.1E-05 37.9 7.6 110 39-155 22-152 (259)
63 PRK01060 endonuclease IV; Prov 89.1 1.1 2.3E-05 38.0 5.9 44 102-145 13-62 (281)
64 smart00642 Aamy Alpha-amylase 89.0 1.3 2.7E-05 36.0 6.0 51 106-156 24-96 (166)
65 PRK09997 hydroxypyruvate isome 88.8 0.66 1.4E-05 39.1 4.3 48 95-148 11-58 (258)
66 TIGR00262 trpA tryptophan synt 88.7 2.1 4.6E-05 37.2 7.5 100 40-147 23-144 (256)
67 PRK05692 hydroxymethylglutaryl 88.6 1.3 2.7E-05 39.1 6.1 88 53-142 92-196 (287)
68 PRK05301 pyrroloquinoline quin 88.5 3.4 7.3E-05 37.0 8.9 96 39-146 47-157 (378)
69 PRK13813 orotidine 5'-phosphat 88.3 1.7 3.6E-05 35.9 6.4 36 39-74 14-49 (215)
70 TIGR01211 ELP3 histone acetylt 87.8 4.8 0.0001 38.8 9.9 110 47-156 127-268 (522)
71 TIGR00736 nifR3_rel_arch TIM-b 87.8 6.9 0.00015 33.8 10.1 96 39-142 78-188 (231)
72 COG1082 IolE Sugar phosphate i 87.6 1.4 3E-05 36.7 5.5 45 102-146 16-61 (274)
73 cd04726 KGPDC_HPS 3-Keto-L-gul 87.5 4.1 8.9E-05 32.8 8.1 96 39-149 11-109 (202)
74 smart00481 POLIIIAc DNA polyme 87.5 1.8 4E-05 29.3 5.2 46 100-148 14-59 (67)
75 PRK08446 coproporphyrinogen II 87.4 3.4 7.4E-05 37.0 8.3 116 27-145 54-180 (350)
76 COG1105 FruK Fructose-1-phosph 87.3 6.8 0.00015 35.6 10.1 77 26-102 101-181 (310)
77 PF01212 Beta_elim_lyase: Beta 86.9 2.2 4.7E-05 37.7 6.6 78 39-122 107-193 (290)
78 TIGR02090 LEU1_arch isopropylm 86.8 2.3 4.9E-05 38.6 6.9 87 54-142 85-182 (363)
79 cd06543 GH18_PF-ChiA-like PF-C 86.8 2.1 4.6E-05 38.0 6.5 78 69-146 53-142 (294)
80 cd02874 GH18_CFLE_spore_hydrol 86.7 2.8 6.1E-05 36.4 7.2 89 46-138 18-125 (313)
81 cd03174 DRE_TIM_metallolyase D 86.7 5.9 0.00013 33.0 8.8 91 44-148 25-133 (265)
82 PRK12344 putative alpha-isopro 86.3 2.2 4.7E-05 40.9 6.7 119 20-142 69-199 (524)
83 TIGR00423 radical SAM domain p 85.9 8.3 0.00018 33.8 9.8 109 39-148 37-163 (309)
84 PRK13347 coproporphyrinogen II 85.9 4.6 9.9E-05 37.5 8.5 120 27-146 106-235 (453)
85 cd07948 DRE_TIM_HCS Saccharomy 85.9 1.8 3.9E-05 37.7 5.5 97 41-142 75-182 (262)
86 PRK05660 HemN family oxidoredu 85.3 5.9 0.00013 35.9 8.7 119 27-145 61-189 (378)
87 PF01261 AP_endonuc_2: Xylose 85.0 0.57 1.2E-05 36.7 1.8 40 107-146 1-43 (213)
88 PRK07379 coproporphyrinogen II 84.8 6.6 0.00014 36.0 8.9 119 27-145 69-197 (400)
89 PLN02746 hydroxymethylglutaryl 84.8 2.1 4.5E-05 39.2 5.6 97 41-142 125-238 (347)
90 cd07938 DRE_TIM_HMGL 3-hydroxy 84.6 2.8 6.2E-05 36.6 6.2 97 41-142 77-190 (274)
91 PRK09061 D-glutamate deacylase 84.6 7.1 0.00015 37.0 9.2 103 43-151 171-283 (509)
92 PF00215 OMPdecase: Orotidine 84.5 1.6 3.5E-05 36.5 4.4 50 39-88 11-60 (226)
93 cd07945 DRE_TIM_CMS Leptospira 84.3 2.3 4.9E-05 37.4 5.4 97 42-142 79-188 (280)
94 PRK00125 pyrF orotidine 5'-pho 84.2 5.5 0.00012 35.4 7.8 93 43-143 43-141 (278)
95 PLN02951 Molybderin biosynthes 84.2 11 0.00025 34.3 10.1 44 39-84 91-136 (373)
96 cd04722 TIM_phosphate_binding 84.0 8.4 0.00018 29.4 8.0 107 42-153 13-124 (200)
97 PRK05926 hypothetical protein; 83.9 15 0.00033 33.7 10.8 88 61-148 122-225 (370)
98 PRK08323 phenylhydantoinase; V 83.8 22 0.00048 32.3 11.8 95 52-151 140-260 (459)
99 PRK08445 hypothetical protein; 83.7 16 0.00034 33.1 10.7 99 50-148 86-200 (348)
100 cd02875 GH18_chitobiase Chitob 83.2 3.1 6.7E-05 37.6 6.0 50 72-123 66-121 (358)
101 TIGR00539 hemN_rel putative ox 83.1 6.5 0.00014 35.2 7.9 118 27-145 54-182 (360)
102 cd01335 Radical_SAM Radical SA 83.0 17 0.00036 27.4 9.2 98 43-152 34-147 (204)
103 PF04476 DUF556: Protein of un 83.0 8.2 0.00018 33.9 8.2 102 42-146 69-183 (235)
104 PRK14010 potassium-transportin 82.8 5 0.00011 39.8 7.6 64 67-146 441-506 (673)
105 PRK01122 potassium-transportin 82.7 4.8 0.0001 39.9 7.5 70 68-153 446-518 (679)
106 PRK13125 trpA tryptophan synth 82.6 29 0.00064 29.5 11.9 112 39-155 16-141 (244)
107 PF01301 Glyco_hydro_35: Glyco 82.6 3.4 7.4E-05 36.9 5.9 51 101-151 24-84 (319)
108 PF10566 Glyco_hydro_97: Glyco 82.5 3.2 7E-05 36.9 5.7 46 101-146 32-89 (273)
109 PF01261 AP_endonuc_2: Xylose 82.5 0.89 1.9E-05 35.6 2.0 98 54-151 9-133 (213)
110 cd00019 AP2Ec AP endonuclease 82.1 2.3 5E-05 36.1 4.5 20 102-121 11-30 (279)
111 cd07937 DRE_TIM_PC_TC_5S Pyruv 82.0 5.1 0.00011 34.9 6.7 98 43-148 26-136 (275)
112 PRK09249 coproporphyrinogen II 82.0 7.6 0.00016 36.1 8.2 120 27-146 105-234 (453)
113 TIGR01740 pyrF orotidine 5'-ph 81.7 14 0.0003 30.8 9.0 44 39-86 9-52 (213)
114 cd01314 D-HYD D-hydantoinases 81.6 24 0.00052 32.0 11.1 93 54-151 144-262 (447)
115 cd06545 GH18_3CO4_chitinase Th 81.6 4.8 0.0001 34.1 6.2 72 70-142 46-127 (253)
116 cd01011 nicotinamidase Nicotin 81.5 5.7 0.00012 32.6 6.5 65 75-146 129-195 (196)
117 cd01315 L-HYD_ALN L-Hydantoina 81.4 33 0.00072 31.1 12.0 124 23-151 81-262 (447)
118 cd00946 FBP_aldolase_IIA Class 81.3 8.2 0.00018 35.5 8.0 79 73-157 77-168 (345)
119 cd04725 OMP_decarboxylase_like 81.2 9.5 0.00021 31.9 7.8 93 39-143 9-102 (216)
120 PRK05904 coproporphyrinogen II 81.1 11 0.00023 34.2 8.6 117 27-146 59-186 (353)
121 cd06542 GH18_EndoS-like Endo-b 80.9 13 0.00027 31.4 8.5 95 47-142 21-140 (255)
122 PF05913 DUF871: Bacterial pro 80.4 2.8 6.1E-05 38.4 4.7 60 83-150 3-67 (357)
123 PRK13209 L-xylulose 5-phosphat 80.3 11 0.00024 31.9 8.0 107 41-150 24-158 (283)
124 cd00598 GH18_chitinase-like Th 79.3 14 0.00031 29.4 8.0 120 2-142 2-136 (210)
125 TIGR00538 hemN oxygen-independ 78.7 14 0.0003 34.3 8.8 118 29-146 107-234 (455)
126 PRK12331 oxaloacetate decarbox 78.6 8.4 0.00018 36.4 7.3 95 42-142 97-195 (448)
127 TIGR00542 hxl6Piso_put hexulos 78.5 35 0.00075 28.9 10.6 81 69-149 51-152 (279)
128 PF00128 Alpha-amylase: Alpha 78.5 3.6 7.8E-05 33.9 4.4 54 103-156 6-78 (316)
129 PRK15447 putative protease; Pr 78.3 14 0.0003 32.7 8.3 89 42-146 16-110 (301)
130 TIGR03470 HpnH hopanoid biosyn 77.9 5.3 0.00011 35.4 5.5 68 71-141 150-227 (318)
131 cd02801 DUS_like_FMN Dihydrour 77.9 14 0.00031 30.2 7.8 97 40-142 66-181 (231)
132 TIGR01037 pyrD_sub1_fam dihydr 77.5 22 0.00047 30.8 9.2 76 42-125 107-193 (300)
133 PRK05628 coproporphyrinogen II 77.5 14 0.00031 33.1 8.3 120 27-146 62-191 (375)
134 cd00740 MeTr MeTr subgroup of 77.5 35 0.00076 29.6 10.4 93 42-137 31-144 (252)
135 PRK09282 pyruvate carboxylase 77.4 14 0.00031 36.0 8.7 96 41-142 96-195 (592)
136 TIGR02631 xylA_Arthro xylose i 77.4 6 0.00013 36.4 5.9 46 102-147 33-85 (382)
137 PTZ00331 alpha/beta hydrolase; 77.3 7.4 0.00016 32.5 6.0 65 77-148 139-205 (212)
138 PRK04302 triosephosphate isome 77.3 6.9 0.00015 32.8 5.8 49 104-152 75-123 (223)
139 PRK05927 hypothetical protein; 77.3 33 0.00072 31.2 10.6 89 59-148 98-203 (350)
140 PRK15452 putative protease; Pr 77.2 12 0.00025 35.4 7.8 78 39-122 12-97 (443)
141 PRK08208 coproporphyrinogen II 77.0 17 0.00037 33.5 8.8 117 27-146 94-224 (430)
142 cd02911 arch_FMN Archeal FMN-b 77.0 25 0.00055 30.0 9.3 96 40-146 84-194 (233)
143 PRK08898 coproporphyrinogen II 77.0 7.1 0.00015 35.6 6.2 92 52-146 72-174 (394)
144 TIGR03128 RuMP_HxlA 3-hexulose 76.9 4.9 0.00011 32.6 4.7 69 42-124 68-136 (206)
145 smart00518 AP2Ec AP endonuclea 76.5 30 0.00065 29.1 9.5 82 44-125 13-108 (273)
146 TIGR01182 eda Entner-Doudoroff 76.3 6.4 0.00014 33.5 5.4 39 71-122 89-129 (204)
147 PRK06015 keto-hydroxyglutarate 76.1 3.6 7.8E-05 34.9 3.8 40 70-122 84-125 (201)
148 cd01948 EAL EAL domain. This d 76.1 7.8 0.00017 31.1 5.6 80 22-118 142-227 (240)
149 PHA02754 hypothetical protein; 75.9 2 4.4E-05 30.5 1.9 20 40-59 20-39 (67)
150 TIGR01497 kdpB K+-transporting 75.9 10 0.00022 37.7 7.4 63 68-146 447-511 (675)
151 PRK07535 methyltetrahydrofolat 75.8 41 0.0009 29.3 10.4 100 42-144 30-152 (261)
152 TIGR01769 GGGP geranylgeranylg 75.8 11 0.00024 32.1 6.6 68 103-178 13-81 (205)
153 PRK00915 2-isopropylmalate syn 75.6 5.5 0.00012 37.9 5.3 87 54-142 93-190 (513)
154 cd02810 DHOD_DHPD_FMN Dihydroo 75.5 16 0.00036 31.2 7.8 79 41-125 111-200 (289)
155 PRK09997 hydroxypyruvate isome 75.3 29 0.00063 29.1 9.1 76 72-150 42-144 (258)
156 TIGR01496 DHPS dihydropteroate 74.9 32 0.00069 29.9 9.5 74 72-145 63-163 (257)
157 TIGR03234 OH-pyruv-isom hydrox 74.6 20 0.00044 29.8 7.9 77 72-150 41-143 (254)
158 PRK13210 putative L-xylulose 5 74.5 19 0.00042 30.2 7.8 82 69-150 51-153 (284)
159 PRK12313 glycogen branching en 74.4 8.1 0.00018 37.5 6.2 54 103-156 173-246 (633)
160 PRK07360 FO synthase subunit 2 74.4 46 0.001 30.2 10.7 94 54-148 108-219 (371)
161 PRK02227 hypothetical protein; 74.3 17 0.00038 31.9 7.6 105 41-146 68-183 (238)
162 TIGR02127 pyrF_sub2 orotidine 74.3 18 0.00039 31.7 7.8 94 41-142 41-139 (261)
163 PRK13306 ulaD 3-keto-L-gulonat 74.2 11 0.00024 31.9 6.2 94 39-145 14-108 (216)
164 PRK14024 phosphoribosyl isomer 74.0 9.9 0.00021 32.3 6.0 116 25-155 75-202 (241)
165 PRK13307 bifunctional formalde 74.0 14 0.0003 34.5 7.3 97 39-148 183-281 (391)
166 PRK08207 coproporphyrinogen II 73.7 23 0.0005 33.7 8.9 119 27-145 221-351 (488)
167 TIGR01515 branching_enzym alph 73.7 9 0.00019 37.2 6.3 53 104-156 160-232 (613)
168 PF03644 Glyco_hydro_85: Glyco 73.7 9.3 0.0002 34.3 6.0 66 52-120 27-105 (311)
169 PRK06294 coproporphyrinogen II 73.6 24 0.00051 32.0 8.6 114 28-145 62-185 (370)
170 PLN03228 methylthioalkylmalate 73.6 8.8 0.00019 36.9 6.1 87 54-142 182-280 (503)
171 TIGR01108 oadA oxaloacetate de 73.6 21 0.00045 34.9 8.7 97 42-142 92-190 (582)
172 PRK09441 cytoplasmic alpha-amy 73.3 8.9 0.00019 35.8 6.0 54 103-156 24-107 (479)
173 PRK10785 maltodextrin glucosid 73.1 11 0.00023 36.6 6.6 55 103-157 181-253 (598)
174 smart00518 AP2Ec AP endonuclea 72.9 11 0.00024 31.7 6.0 44 103-146 12-61 (273)
175 PLN02447 1,4-alpha-glucan-bran 72.9 11 0.00024 38.1 6.8 54 104-157 254-327 (758)
176 PRK12677 xylose isomerase; Pro 72.7 7.5 0.00016 35.8 5.2 46 102-147 32-84 (384)
177 COG1038 PycA Pyruvate carboxyl 72.3 4.8 0.0001 41.5 4.1 68 72-148 69-138 (1149)
178 cd02072 Glm_B12_BD B12 binding 72.3 12 0.00025 29.8 5.6 95 39-146 15-111 (128)
179 PRK14042 pyruvate carboxylase 72.3 25 0.00054 34.6 9.0 115 23-142 75-195 (596)
180 COG4130 Predicted sugar epimer 72.2 5.8 0.00013 35.1 4.2 46 101-146 17-65 (272)
181 PRK09505 malS alpha-amylase; R 72.1 12 0.00027 37.1 7.0 55 103-157 232-319 (683)
182 TIGR00510 lipA lipoate synthas 72.1 28 0.00062 31.1 8.7 119 39-182 125-256 (302)
183 PRK05985 cytosine deaminase; P 72.0 25 0.00054 31.4 8.3 77 69-149 190-271 (391)
184 PF13380 CoA_binding_2: CoA bi 72.0 7 0.00015 29.8 4.2 41 101-147 66-106 (116)
185 TIGR02104 pulA_typeI pullulana 71.5 9 0.00019 37.1 5.7 54 102-155 165-254 (605)
186 TIGR02617 tnaA_trp_ase tryptop 71.3 19 0.00042 34.5 7.8 100 39-142 168-293 (467)
187 cd06564 GH20_DspB_LnbB-like Gl 71.1 11 0.00025 33.4 5.9 27 126-152 78-104 (326)
188 PRK00230 orotidine 5'-phosphat 71.0 15 0.00034 31.1 6.5 74 39-121 13-87 (230)
189 TIGR02403 trehalose_treC alpha 70.8 12 0.00025 35.9 6.2 54 103-156 29-101 (543)
190 TIGR01647 ATPase-IIIA_H plasma 70.3 9.9 0.00022 37.8 5.9 69 67-146 442-537 (755)
191 TIGR01210 conserved hypothetic 70.0 19 0.0004 32.1 7.0 102 42-153 54-178 (313)
192 TIGR03700 mena_SCO4494 putativ 70.0 67 0.0015 28.8 10.6 88 61-148 103-206 (351)
193 PRK13745 anaerobic sulfatase-m 70.0 23 0.00049 32.5 7.7 97 39-146 49-169 (412)
194 TIGR02026 BchE magnesium-proto 69.9 43 0.00094 31.5 9.8 90 54-149 240-342 (497)
195 PF03740 PdxJ: Pyridoxal phosp 69.9 6.6 0.00014 34.5 4.1 72 67-148 108-190 (239)
196 COG2008 GLY1 Threonine aldolas 69.9 5.8 0.00013 36.6 3.8 87 25-121 99-197 (342)
197 PF00857 Isochorismatase: Isoc 69.7 5.2 0.00011 31.2 3.1 92 43-148 78-171 (174)
198 PRK15122 magnesium-transportin 69.6 11 0.00025 38.3 6.2 68 68-146 551-640 (903)
199 PF01081 Aldolase: KDPG and KH 69.6 4.2 9E-05 34.4 2.7 39 70-121 88-128 (196)
200 cd00854 NagA N-acetylglucosami 69.6 7.3 0.00016 35.0 4.4 45 39-91 147-194 (374)
201 TIGR00238 KamA family protein. 69.5 43 0.00092 30.1 9.3 98 41-146 145-253 (331)
202 PRK08599 coproporphyrinogen II 69.1 33 0.00071 30.8 8.5 104 39-145 66-182 (377)
203 PF02811 PHP: PHP domain; Int 68.8 9.7 0.00021 29.1 4.4 48 98-148 13-60 (175)
204 cd02803 OYE_like_FMN_family Ol 68.8 5.2 0.00011 34.9 3.2 41 102-142 229-279 (327)
205 PRK07114 keto-hydroxyglutarate 68.5 6.9 0.00015 33.7 3.8 42 70-124 99-142 (222)
206 PRK14041 oxaloacetate decarbox 68.3 28 0.00062 33.1 8.2 87 50-142 105-194 (467)
207 TIGR01501 MthylAspMutase methy 68.2 15 0.00033 29.3 5.5 95 39-146 17-113 (134)
208 COG4724 Endo-beta-N-acetylgluc 68.1 17 0.00036 34.9 6.5 112 32-146 89-222 (553)
209 PRK09240 thiH thiamine biosynt 68.1 56 0.0012 29.7 9.8 97 39-146 105-219 (371)
210 PRK09856 fructoselysine 3-epim 68.1 46 0.001 27.9 8.7 81 70-150 47-149 (275)
211 PRK10933 trehalose-6-phosphate 68.0 16 0.00034 35.2 6.5 54 103-156 35-107 (551)
212 PF04405 ScdA_N: Domain of Unk 67.7 15 0.00032 25.2 4.6 39 74-113 14-55 (56)
213 PRK15108 biotin synthase; Prov 67.6 45 0.00098 30.1 9.1 67 70-147 111-188 (345)
214 TIGR00973 leuA_bact 2-isopropy 67.4 11 0.00024 35.8 5.3 87 54-142 90-187 (494)
215 PRK14040 oxaloacetate decarbox 67.3 60 0.0013 31.9 10.4 109 24-142 77-196 (593)
216 cd06565 GH20_GcnA-like Glycosy 67.2 14 0.00031 32.5 5.7 66 66-152 13-82 (301)
217 cd06522 GH25_AtlA-like AtlA is 67.0 38 0.00081 27.7 7.8 93 47-146 21-126 (192)
218 PRK05301 pyrroloquinoline quin 66.9 15 0.00032 32.9 5.8 70 66-145 45-116 (378)
219 cd03321 mandelate_racemase Man 66.8 9.5 0.0002 34.1 4.5 62 24-95 236-300 (355)
220 PRK05718 keto-hydroxyglutarate 66.8 8.9 0.00019 32.6 4.2 41 71-124 96-138 (212)
221 PRK12568 glycogen branching en 66.5 14 0.0003 37.2 6.0 55 103-157 272-346 (730)
222 KOG3349 Predicted glycosyltran 66.4 7.6 0.00017 32.5 3.5 60 83-146 5-65 (170)
223 PF00563 EAL: EAL domain; Int 66.3 5.4 0.00012 31.9 2.6 78 22-119 144-229 (236)
224 PLN02389 biotin synthase 66.2 24 0.00053 32.5 7.2 69 70-147 153-230 (379)
225 PRK06846 putative deaminase; V 66.1 29 0.00063 31.4 7.6 74 70-148 206-285 (410)
226 PLN02951 Molybderin biosynthes 65.9 69 0.0015 29.2 10.0 118 24-146 105-231 (373)
227 PRK09234 fbiC FO synthase; Rev 65.7 37 0.00081 34.7 8.9 85 61-146 581-682 (843)
228 PF00150 Cellulase: Cellulase 65.7 12 0.00027 30.7 4.7 50 102-151 22-83 (281)
229 PRK10517 magnesium-transportin 65.6 14 0.00031 37.6 6.0 68 68-146 551-640 (902)
230 TIGR02401 trehalose_TreY malto 65.6 15 0.00032 37.6 6.0 55 103-157 18-92 (825)
231 cd00429 RPE Ribulose-5-phospha 65.5 58 0.0013 26.0 8.5 96 39-150 10-112 (211)
232 PRK05402 glycogen branching en 65.5 15 0.00032 36.5 6.0 54 102-155 267-340 (726)
233 cd00950 DHDPS Dihydrodipicolin 65.1 14 0.0003 31.8 5.1 78 68-146 19-98 (284)
234 cd03413 CbiK_C Anaerobic cobal 65.0 38 0.00082 25.5 6.9 84 59-149 6-98 (103)
235 cd01297 D-aminoacylase D-amino 65.0 88 0.0019 28.4 10.5 92 54-151 181-282 (415)
236 PRK09389 (R)-citramalate synth 64.9 14 0.00031 35.1 5.5 96 42-142 78-184 (488)
237 TIGR02100 glgX_debranch glycog 64.8 18 0.0004 35.9 6.4 52 106-157 189-272 (688)
238 COG1891 Uncharacterized protei 64.2 8 0.00017 33.4 3.3 54 58-121 155-208 (235)
239 TIGR00559 pdxJ pyridoxine 5'-p 64.2 30 0.00064 30.5 6.9 70 68-147 108-186 (237)
240 PRK07259 dihydroorotate dehydr 64.1 63 0.0014 28.0 9.0 78 41-125 104-193 (301)
241 PLN00196 alpha-amylase; Provis 64.0 21 0.00046 33.4 6.4 54 103-156 46-118 (428)
242 TIGR03821 AblA_like_1 lysine-2 63.8 64 0.0014 28.9 9.2 97 43-147 161-268 (321)
243 TIGR03217 4OH_2_O_val_ald 4-hy 63.8 78 0.0017 28.6 9.8 43 102-145 115-158 (333)
244 cd07944 DRE_TIM_HOA_like 4-hyd 63.8 65 0.0014 28.0 9.0 90 42-146 24-125 (266)
245 cd06525 GH25_Lyc-like Lyc mura 63.5 12 0.00027 30.2 4.2 87 54-146 24-120 (184)
246 PRK07572 cytosine deaminase; V 63.4 53 0.0012 29.9 8.8 74 70-148 191-270 (426)
247 PRK05581 ribulose-phosphate 3- 63.2 76 0.0016 25.7 8.9 104 30-150 6-116 (220)
248 smart00052 EAL Putative diguan 63.2 24 0.00053 28.2 5.9 77 22-118 143-228 (241)
249 COG1060 ThiH Thiamine biosynth 63.2 9.2 0.0002 35.3 3.8 122 17-153 46-181 (370)
250 PRK14706 glycogen branching en 63.1 16 0.00035 36.0 5.7 52 104-155 171-242 (639)
251 TIGR01524 ATPase-IIIB_Mg magne 63.0 19 0.0004 36.5 6.2 68 68-146 516-605 (867)
252 PLN02361 alpha-amylase 63.0 19 0.00041 33.5 5.9 54 102-155 30-101 (401)
253 PRK03705 glycogen debranching 62.9 14 0.0003 36.6 5.2 51 106-156 184-268 (658)
254 TIGR00612 ispG_gcpE 1-hydroxy- 62.8 25 0.00055 32.6 6.5 98 26-132 73-182 (346)
255 TIGR02137 HSK-PSP phosphoserin 62.7 14 0.0003 30.8 4.5 42 103-144 93-145 (203)
256 cd00423 Pterin_binding Pterin 62.7 99 0.0022 26.5 10.0 101 42-145 29-165 (258)
257 TIGR03822 AblA_like_2 lysine-2 62.7 75 0.0016 28.3 9.4 30 54-83 137-166 (321)
258 cd01299 Met_dep_hydrolase_A Me 62.7 28 0.00061 30.0 6.6 12 23-34 53-64 (342)
259 COG2102 Predicted ATPases of P 62.7 83 0.0018 27.5 9.3 95 41-149 76-179 (223)
260 PLN02960 alpha-amylase 62.7 19 0.00042 37.1 6.3 54 104-157 420-493 (897)
261 PRK02261 methylaspartate mutas 62.6 27 0.00058 27.6 5.9 95 39-146 19-115 (137)
262 cd01293 Bact_CD Bacterial cyto 62.5 23 0.00049 30.9 6.0 76 68-148 187-268 (398)
263 cd04885 ACT_ThrD-I Tandem C-te 62.5 17 0.00037 24.7 4.2 46 100-146 9-66 (68)
264 TIGR00433 bioB biotin syntheta 62.2 34 0.00073 29.2 6.9 17 130-146 158-174 (296)
265 cd06570 GH20_chitobiase-like_1 62.2 22 0.00048 31.8 6.0 28 126-153 64-91 (311)
266 PRK08417 dihydroorotase; Provi 62.0 1.2E+02 0.0027 27.3 12.6 30 126-155 202-231 (386)
267 PRK09248 putative hydrolase; V 61.8 20 0.00044 30.2 5.4 16 103-118 203-218 (246)
268 TIGR03151 enACPred_II putative 61.7 43 0.00093 29.8 7.7 72 67-151 45-117 (307)
269 COG0284 PyrF Orotidine-5'-phos 61.6 14 0.00031 32.1 4.5 50 26-80 14-63 (240)
270 PRK12581 oxaloacetate decarbox 61.6 42 0.00091 32.2 8.0 111 24-142 85-204 (468)
271 COG0296 GlgB 1,4-alpha-glucan 61.5 20 0.00043 35.6 5.9 91 49-148 116-232 (628)
272 PRK09490 metH B12-dependent me 61.4 91 0.002 33.5 11.0 100 44-146 391-519 (1229)
273 PF01136 Peptidase_U32: Peptid 61.3 21 0.00046 29.5 5.4 37 102-148 3-41 (233)
274 cd06565 GH20_GcnA-like Glycosy 61.2 11 0.00023 33.4 3.7 84 67-168 57-144 (301)
275 PRK14511 maltooligosyl trehalo 60.8 25 0.00053 36.3 6.6 56 102-157 21-96 (879)
276 cd02871 GH18_chitinase_D-like 60.8 23 0.00051 31.2 5.8 56 69-124 59-120 (312)
277 cd01012 YcaC_related YcaC rela 60.8 37 0.0008 26.6 6.4 92 43-148 53-147 (157)
278 PRK09058 coproporphyrinogen II 60.7 33 0.00072 32.0 7.0 119 27-145 117-245 (449)
279 PRK12330 oxaloacetate decarbox 60.6 37 0.0008 32.8 7.5 110 24-142 77-196 (499)
280 COG0821 gcpE 1-hydroxy-2-methy 60.3 33 0.00072 31.9 6.8 92 26-126 75-178 (361)
281 PRK11059 regulatory protein Cs 60.2 26 0.00057 33.6 6.4 79 22-118 543-628 (640)
282 PLN02321 2-isopropylmalate syn 60.0 19 0.00042 35.6 5.6 85 56-142 185-281 (632)
283 TIGR03822 AblA_like_2 lysine-2 59.9 84 0.0018 28.0 9.2 117 24-146 135-261 (321)
284 cd02932 OYE_YqiM_FMN Old yello 59.8 11 0.00024 33.4 3.7 40 103-142 243-288 (336)
285 PF13344 Hydrolase_6: Haloacid 59.6 19 0.00041 26.6 4.3 13 104-116 45-57 (101)
286 PRK13758 anaerobic sulfatase-m 59.5 40 0.00086 29.9 7.1 55 56-121 60-122 (370)
287 cd00003 PNPsynthase Pyridoxine 59.0 21 0.00045 31.4 5.0 72 67-148 107-187 (234)
288 PRK10551 phage resistance prot 58.7 51 0.0011 31.3 8.0 116 43-172 370-498 (518)
289 TIGR00284 dihydropteroate synt 58.6 1.4E+02 0.003 28.8 11.0 117 22-144 151-280 (499)
290 TIGR01768 GGGP-family geranylg 58.6 30 0.00066 29.9 6.0 68 103-178 16-83 (223)
291 PRK08444 hypothetical protein; 58.5 1.5E+02 0.0032 27.1 10.9 88 61-148 104-207 (353)
292 PLN02428 lipoic acid synthase 58.5 28 0.00062 32.0 6.1 72 70-146 231-317 (349)
293 TIGR03471 HpnJ hopanoid biosyn 58.2 1.2E+02 0.0027 28.1 10.3 88 54-150 246-343 (472)
294 TIGR02456 treS_nterm trehalose 58.2 34 0.00074 32.6 6.8 52 104-155 31-101 (539)
295 TIGR00977 LeuA_rel 2-isopropyl 57.9 22 0.00047 34.3 5.4 69 73-142 125-195 (526)
296 cd02742 GH20_hexosaminidase Be 57.8 28 0.00061 30.6 5.8 76 66-152 12-94 (303)
297 PRK02083 imidazole glycerol ph 57.7 85 0.0018 26.6 8.6 116 25-155 74-209 (253)
298 PRK07329 hypothetical protein; 57.7 31 0.00066 29.4 5.8 76 69-147 164-243 (246)
299 PRK06552 keto-hydroxyglutarate 57.5 15 0.00032 31.3 3.8 38 70-120 96-135 (213)
300 PRK05265 pyridoxine 5'-phospha 57.5 24 0.00051 31.1 5.2 70 68-147 111-188 (239)
301 TIGR00742 yjbN tRNA dihydrouri 57.5 46 0.001 29.8 7.2 82 57-142 96-192 (318)
302 TIGR02402 trehalose_TreZ malto 57.4 25 0.00055 33.7 5.8 49 107-155 117-185 (542)
303 TIGR02666 moaA molybdenum cofa 57.4 68 0.0015 28.2 8.1 100 42-146 75-185 (334)
304 cd06415 GH25_Cpl1-like Cpl-1 l 57.4 78 0.0017 25.9 8.0 91 47-146 17-124 (196)
305 PRK13404 dihydropyrimidinase; 57.0 1.1E+02 0.0024 28.6 9.9 80 67-151 163-266 (477)
306 COG1921 SelA Selenocysteine sy 57.0 17 0.00038 34.1 4.5 86 72-173 176-272 (395)
307 PF09587 PGA_cap: Bacterial ca 56.9 30 0.00065 29.2 5.7 44 103-146 64-108 (250)
308 PF05913 DUF871: Bacterial pro 56.5 14 0.0003 34.0 3.8 92 40-146 13-114 (357)
309 cd07941 DRE_TIM_LeuA3 Desulfob 56.3 26 0.00056 30.4 5.3 40 102-144 21-60 (273)
310 PF14871 GHL6: Hypothetical gl 56.2 35 0.00077 26.9 5.6 44 103-146 2-60 (132)
311 PRK14705 glycogen branching en 56.1 27 0.00059 37.2 6.2 52 103-154 768-839 (1224)
312 cd02930 DCR_FMN 2,4-dienoyl-Co 56.0 1.1E+02 0.0023 27.5 9.3 16 71-86 78-93 (353)
313 PRK08508 biotin synthase; Prov 55.8 1E+02 0.0023 26.7 9.0 37 106-145 142-181 (279)
314 cd02742 GH20_hexosaminidase Be 55.6 13 0.00028 32.7 3.3 93 66-169 68-162 (303)
315 PRK06852 aldolase; Validated 55.6 69 0.0015 29.0 7.9 87 56-148 96-209 (304)
316 PRK09195 gatY tagatose-bisphos 55.6 71 0.0015 28.5 8.0 53 105-157 88-142 (284)
317 TIGR01858 tag_bisphos_ald clas 55.5 71 0.0015 28.5 8.0 53 105-157 86-140 (282)
318 TIGR02493 PFLA pyruvate format 55.4 14 0.00031 30.4 3.4 48 39-87 47-98 (235)
319 PRK10415 tRNA-dihydrouridine s 55.4 40 0.00088 30.0 6.4 85 56-146 105-197 (321)
320 PF01983 CofC: Guanylyl transf 55.2 10 0.00022 32.6 2.5 123 23-153 62-209 (217)
321 cd00947 TBP_aldolase_IIB Tagat 55.2 80 0.0017 28.1 8.2 53 105-157 83-137 (276)
322 PRK07998 gatY putative fructos 55.1 63 0.0014 28.9 7.6 109 42-158 5-143 (283)
323 PRK05799 coproporphyrinogen II 55.1 1E+02 0.0022 27.6 9.0 117 27-146 54-182 (374)
324 PRK10992 iron-sulfur cluster r 55.0 38 0.00083 28.8 6.0 59 75-136 18-79 (220)
325 PF03447 NAD_binding_3: Homose 55.0 13 0.00028 27.5 2.8 48 101-149 70-117 (117)
326 KOG4175 Tryptophan synthase al 54.7 63 0.0014 28.6 7.2 73 72-151 82-156 (268)
327 PRK15108 biotin synthase; Prov 54.4 28 0.00061 31.4 5.3 72 66-145 75-148 (345)
328 PRK11145 pflA pyruvate formate 54.2 40 0.00088 28.1 6.0 48 39-87 52-103 (246)
329 cd01297 D-aminoacylase D-amino 54.1 76 0.0017 28.8 8.1 44 103-146 169-215 (415)
330 cd06563 GH20_chitobiase-like T 53.8 31 0.00067 31.1 5.5 27 126-152 82-108 (357)
331 COG5014 Predicted Fe-S oxidore 53.7 26 0.00055 30.3 4.6 45 103-147 80-124 (228)
332 COG0800 Eda 2-keto-3-deoxy-6-p 53.7 15 0.00032 31.8 3.3 45 65-123 89-135 (211)
333 PRK05481 lipoyl synthase; Prov 53.6 44 0.00095 29.4 6.3 70 71-145 181-265 (289)
334 TIGR00510 lipA lipoate synthas 53.5 44 0.00096 29.9 6.4 71 71-146 192-277 (302)
335 PRK11858 aksA trans-homoaconit 53.4 26 0.00056 32.0 5.0 42 102-146 27-68 (378)
336 PRK08573 phosphomethylpyrimidi 53.4 32 0.0007 32.0 5.7 56 24-87 46-101 (448)
337 PRK07369 dihydroorotase; Provi 53.3 1.9E+02 0.004 26.7 12.2 31 126-156 234-264 (418)
338 COG0535 Predicted Fe-S oxidore 53.2 1.3E+02 0.0028 25.6 9.0 93 43-145 56-160 (347)
339 cd06562 GH20_HexA_HexB-like Be 53.0 18 0.00039 32.6 3.8 96 62-168 62-162 (348)
340 cd04731 HisF The cyclase subun 52.9 60 0.0013 27.1 6.8 114 26-154 72-204 (243)
341 cd03319 L-Ala-DL-Glu_epimerase 52.9 17 0.00036 31.8 3.5 65 24-98 227-294 (316)
342 COG1237 Metal-dependent hydrol 52.8 95 0.0021 27.7 8.2 70 41-125 181-256 (259)
343 TIGR02351 thiH thiazole biosyn 52.8 75 0.0016 28.8 7.8 98 39-147 104-219 (366)
344 TIGR02109 PQQ_syn_pqqE coenzym 52.7 39 0.00084 29.9 5.9 70 66-145 36-107 (358)
345 COG0635 HemN Coproporphyrinoge 52.7 30 0.00065 32.2 5.3 95 48-146 80-189 (416)
346 PF07894 DUF1669: Protein of u 52.7 10 0.00022 34.1 2.2 68 41-121 137-204 (284)
347 TIGR01517 ATPase-IIB_Ca plasma 52.6 33 0.00073 35.0 6.1 68 68-146 580-671 (941)
348 COG0502 BioB Biotin synthase a 52.6 38 0.00083 31.1 5.9 44 104-147 144-196 (335)
349 cd04730 NPD_like 2-Nitropropan 52.5 29 0.00062 28.6 4.7 41 102-149 68-108 (236)
350 PRK12928 lipoyl synthase; Prov 52.3 51 0.0011 29.2 6.5 18 128-145 217-234 (290)
351 PRK13523 NADPH dehydrogenase N 52.3 1.1E+02 0.0023 27.7 8.6 17 107-123 148-164 (337)
352 COG0191 Fba Fructose/tagatose 52.2 87 0.0019 28.3 8.0 121 39-167 27-154 (286)
353 PRK08898 coproporphyrinogen II 52.2 95 0.0021 28.3 8.4 117 27-144 76-202 (394)
354 cd06564 GH20_DspB_LnbB-like Gl 51.9 18 0.00039 32.1 3.6 92 63-168 75-170 (326)
355 cd00408 DHDPS-like Dihydrodipi 51.6 37 0.0008 29.0 5.4 77 69-146 17-95 (281)
356 cd01015 CSHase N-carbamoylsarc 51.6 51 0.0011 26.3 5.9 80 50-143 87-168 (179)
357 cd07939 DRE_TIM_NifV Streptomy 51.2 33 0.00071 29.3 5.0 40 102-144 21-60 (259)
358 PRK14510 putative bifunctional 51.2 29 0.00063 36.8 5.5 54 105-158 191-275 (1221)
359 cd01299 Met_dep_hydrolase_A Me 51.2 1.6E+02 0.0035 25.3 10.1 91 39-149 118-221 (342)
360 PRK11145 pflA pyruvate formate 51.2 54 0.0012 27.3 6.3 39 83-126 73-111 (246)
361 PRK12737 gatY tagatose-bisphos 51.1 45 0.00098 29.7 6.0 53 105-157 88-142 (284)
362 cd03316 MR_like Mandelate race 51.0 21 0.00046 31.4 3.9 58 24-93 239-301 (357)
363 PRK09248 putative hydrolase; V 50.6 42 0.0009 28.3 5.5 44 102-146 141-188 (246)
364 PRK07328 histidinol-phosphatas 50.6 18 0.0004 31.0 3.4 75 70-147 177-255 (269)
365 PRK03170 dihydrodipicolinate s 50.5 38 0.00082 29.3 5.3 78 68-146 20-99 (292)
366 PRK05985 cytosine deaminase; P 50.3 1.3E+02 0.0029 26.8 9.0 119 24-145 110-235 (391)
367 COG3589 Uncharacterized conser 50.1 37 0.0008 31.6 5.4 41 74-118 20-66 (360)
368 TIGR00735 hisF imidazoleglycer 50.1 79 0.0017 26.9 7.2 117 25-154 74-210 (254)
369 TIGR03581 EF_0839 conserved hy 50.0 1.2E+02 0.0026 26.7 8.3 100 38-150 90-210 (236)
370 cd07940 DRE_TIM_IPMS 2-isoprop 49.8 29 0.00063 29.8 4.5 38 102-142 21-58 (268)
371 COG1874 LacA Beta-galactosidas 49.7 28 0.00061 34.9 4.9 60 85-148 16-86 (673)
372 PF00563 EAL: EAL domain; Int 49.6 18 0.0004 28.8 3.0 99 41-149 106-209 (236)
373 PRK14507 putative bifunctional 49.6 37 0.0008 37.5 6.0 55 102-156 759-833 (1693)
374 PRK12857 fructose-1,6-bisphosp 49.5 1.1E+02 0.0024 27.3 8.2 53 105-157 88-142 (284)
375 PRK13561 putative diguanylate 49.5 48 0.001 31.6 6.3 94 22-133 544-644 (651)
376 PRK09057 coproporphyrinogen II 49.3 1.1E+02 0.0025 27.6 8.4 117 27-144 58-184 (380)
377 cd04740 DHOD_1B_like Dihydroor 49.0 1.7E+02 0.0037 25.2 9.2 78 41-125 102-190 (296)
378 cd07947 DRE_TIM_Re_CS Clostrid 48.9 54 0.0012 28.9 6.1 97 41-142 78-198 (279)
379 PRK06801 hypothetical protein; 48.7 1E+02 0.0022 27.5 7.8 47 104-152 87-137 (286)
380 PRK09059 dihydroorotase; Valid 48.7 2.2E+02 0.0047 26.3 10.3 126 22-153 88-265 (429)
381 COG0119 LeuA Isopropylmalate/h 48.6 64 0.0014 30.2 6.9 99 42-142 81-187 (409)
382 PF02449 Glyco_hydro_42: Beta- 48.6 40 0.00088 30.2 5.4 43 102-146 11-63 (374)
383 TIGR02090 LEU1_arch isopropylm 48.5 33 0.00071 31.2 4.8 42 102-146 23-64 (363)
384 PF10566 Glyco_hydro_97: Glyco 48.5 56 0.0012 29.1 6.1 76 66-146 69-153 (273)
385 TIGR01501 MthylAspMutase methy 48.4 38 0.00082 27.0 4.6 88 42-139 40-131 (134)
386 COG0621 MiaB 2-methylthioadeni 48.3 81 0.0018 30.0 7.5 101 41-146 212-328 (437)
387 PRK01130 N-acetylmannosamine-6 48.2 44 0.00095 27.6 5.2 48 104-151 78-127 (221)
388 TIGR02826 RNR_activ_nrdG3 anae 48.1 52 0.0011 26.2 5.4 51 67-124 46-98 (147)
389 cd04738 DHOD_2_like Dihydrooro 48.0 2E+02 0.0043 25.6 9.6 80 40-127 147-242 (327)
390 PLN02784 alpha-amylase 48.0 81 0.0017 32.8 7.8 56 102-157 522-595 (894)
391 cd00019 AP2Ec AP endonuclease 47.9 76 0.0016 26.8 6.7 81 69-149 44-142 (279)
392 cd06416 GH25_Lys1-like Lys-1 i 47.8 54 0.0012 26.7 5.6 94 49-146 20-126 (196)
393 PF03102 NeuB: NeuB family; I 47.8 54 0.0012 28.5 5.9 67 66-148 52-118 (241)
394 PLN03059 beta-galactosidase; P 47.7 34 0.00074 35.1 5.2 50 101-150 59-118 (840)
395 COG2200 Rtn c-di-GMP phosphodi 47.7 77 0.0017 27.1 6.8 114 45-172 110-237 (256)
396 PF01373 Glyco_hydro_14: Glyco 47.6 38 0.00082 32.0 5.2 81 71-153 17-112 (402)
397 cd02801 DUS_like_FMN Dihydrour 47.6 38 0.00083 27.7 4.7 41 102-142 68-121 (231)
398 cd06414 GH25_LytC-like The Lyt 47.5 1.3E+02 0.0028 24.4 7.8 91 50-148 21-131 (191)
399 PRK13523 NADPH dehydrogenase N 47.5 18 0.0004 32.6 3.0 68 70-142 193-273 (337)
400 PRK15447 putative protease; Pr 47.3 59 0.0013 28.7 6.1 45 102-146 16-64 (301)
401 cd03318 MLE Muconate Lactonizi 47.2 28 0.00061 31.0 4.1 63 24-96 238-303 (365)
402 COG0439 AccC Biotin carboxylas 47.1 44 0.00096 31.8 5.6 98 32-142 80-187 (449)
403 PRK11440 putative hydrolase; P 46.9 64 0.0014 25.9 5.9 78 51-142 95-174 (188)
404 PRK00278 trpC indole-3-glycero 46.9 44 0.00096 28.9 5.2 56 107-164 126-182 (260)
405 TIGR02660 nifV_homocitr homoci 46.8 36 0.00079 30.8 4.8 41 102-145 24-64 (365)
406 cd04909 ACT_PDH-BS C-terminal 46.7 42 0.0009 22.2 4.0 17 130-146 53-69 (69)
407 TIGR01212 radical SAM protein, 46.7 1.8E+02 0.004 25.5 9.1 114 26-145 79-208 (302)
408 COG3981 Predicted acetyltransf 46.6 19 0.00042 30.3 2.8 41 82-129 103-145 (174)
409 cd04886 ACT_ThrD-II-like C-ter 46.5 75 0.0016 20.2 5.8 46 102-147 11-72 (73)
410 cd07948 DRE_TIM_HCS Saccharomy 46.5 1.1E+02 0.0023 26.6 7.6 92 41-146 25-128 (262)
411 cd02072 Glm_B12_BD B12 binding 46.4 41 0.00088 26.7 4.5 75 42-124 38-117 (128)
412 PRK12394 putative metallo-depe 46.4 40 0.00086 30.2 5.0 47 41-87 142-190 (379)
413 PRK13561 putative diguanylate 46.4 41 0.00089 32.0 5.3 64 109-173 567-636 (651)
414 PRK00366 ispG 4-hydroxy-3-meth 46.4 54 0.0012 30.6 5.9 98 26-132 81-191 (360)
415 smart00636 Glyco_18 Glycosyl h 46.0 75 0.0016 27.6 6.5 50 72-122 54-115 (334)
416 TIGR01490 HAD-SF-IB-hyp1 HAD-s 45.9 92 0.002 24.6 6.6 98 65-175 87-200 (202)
417 PF00728 Glyco_hydro_20: Glyco 45.8 17 0.00036 31.8 2.4 27 126-152 69-95 (351)
418 PRK10319 N-acetylmuramoyl-l-al 45.7 1.2E+02 0.0026 27.0 7.8 45 102-150 90-134 (287)
419 cd03324 rTSbeta_L-fuconate_deh 45.7 32 0.00069 32.0 4.3 84 39-129 305-406 (415)
420 PRK10076 pyruvate formate lyas 45.6 65 0.0014 27.2 5.9 61 72-139 21-90 (213)
421 PRK07374 dnaE DNA polymerase I 45.4 37 0.00079 36.1 5.2 50 96-148 14-63 (1170)
422 PLN02621 nicotinamidase 45.3 65 0.0014 26.3 5.7 82 51-146 101-184 (197)
423 PRK09389 (R)-citramalate synth 45.2 38 0.00082 32.3 4.9 42 102-146 25-66 (488)
424 TIGR02826 RNR_activ_nrdG3 anae 45.1 50 0.0011 26.4 4.9 49 39-90 47-97 (147)
425 TIGR03820 lys_2_3_AblA lysine- 44.8 1.4E+02 0.003 28.2 8.5 105 39-146 139-248 (417)
426 PF04551 GcpE: GcpE protein; 44.6 56 0.0012 30.5 5.7 82 51-132 92-191 (359)
427 PRK05673 dnaE DNA polymerase I 44.6 39 0.00084 35.7 5.2 50 95-148 12-62 (1135)
428 cd06568 GH20_SpHex_like A subg 44.5 22 0.00047 31.9 3.0 100 60-168 65-167 (329)
429 cd02810 DHOD_DHPD_FMN Dihydroo 44.4 22 0.00047 30.5 2.9 41 102-142 112-160 (289)
430 cd01302 Cyclic_amidohydrolases 44.4 2.1E+02 0.0045 25.3 9.1 122 23-153 35-180 (337)
431 PLN02803 beta-amylase 44.4 51 0.0011 32.4 5.6 68 81-148 83-162 (548)
432 PLN00197 beta-amylase; Provisi 43.9 52 0.0011 32.5 5.6 68 81-148 103-182 (573)
433 PRK07259 dihydroorotate dehydr 43.7 39 0.00085 29.3 4.4 41 102-142 105-155 (301)
434 PLN02801 beta-amylase 43.7 52 0.0011 32.1 5.5 47 100-146 36-90 (517)
435 COG0269 SgbH 3-hexulose-6-phos 43.7 1.2E+02 0.0026 26.4 7.2 95 41-152 71-173 (217)
436 PRK02261 methylaspartate mutas 43.6 61 0.0013 25.5 5.1 59 77-145 25-84 (137)
437 PRK12999 pyruvate carboxylase; 43.6 71 0.0015 33.8 6.9 101 39-142 625-732 (1146)
438 cd01293 Bact_CD Bacterial cyto 43.5 1.1E+02 0.0024 26.6 7.2 74 70-145 158-233 (398)
439 PRK12928 lipoyl synthase; Prov 43.5 1.9E+02 0.0041 25.6 8.7 53 127-179 185-250 (290)
440 PRK04165 acetyl-CoA decarbonyl 43.3 3E+02 0.0066 26.3 10.7 83 54-144 128-226 (450)
441 PF14098 SSPI: Small, acid-sol 43.2 62 0.0014 23.2 4.6 32 68-99 15-49 (65)
442 TIGR02082 metH 5-methyltetrahy 43.1 2.6E+02 0.0056 30.0 10.8 97 47-146 378-503 (1178)
443 PF08901 DUF1847: Protein of u 43.1 40 0.00088 28.0 4.1 85 69-155 7-104 (157)
444 cd04729 NanE N-acetylmannosami 43.1 1.9E+02 0.0041 23.8 8.8 45 105-149 83-129 (219)
445 cd01013 isochorismatase Isocho 43.0 62 0.0013 26.6 5.3 73 58-143 122-196 (203)
446 TIGR01235 pyruv_carbox pyruvat 43.0 24 0.00052 37.2 3.4 40 103-142 691-730 (1143)
447 smart00052 EAL Putative diguan 42.9 1.6E+02 0.0034 23.4 7.6 119 42-174 104-236 (241)
448 cd04734 OYE_like_3_FMN Old yel 42.9 72 0.0016 28.7 6.1 56 70-126 192-254 (343)
449 PRK09234 fbiC FO synthase; Rev 42.7 86 0.0019 32.2 7.2 113 24-143 572-708 (843)
450 PRK13586 1-(5-phosphoribosyl)- 42.6 72 0.0016 27.3 5.8 89 39-137 84-186 (232)
451 cd04740 DHOD_1B_like Dihydroor 42.6 61 0.0013 27.9 5.4 46 102-147 103-158 (296)
452 COG1646 Predicted phosphate-bi 42.5 72 0.0016 28.2 5.8 70 102-179 29-99 (240)
453 COG0366 AmyA Glycosidases [Car 42.4 55 0.0012 29.5 5.3 54 105-158 33-105 (505)
454 cd00331 IGPS Indole-3-glycerol 42.4 1.2E+02 0.0027 24.8 7.0 83 68-164 106-196 (217)
455 TIGR03572 WbuZ glycosyl amidat 42.4 1.5E+02 0.0032 24.6 7.6 116 25-153 74-207 (232)
456 cd06660 Aldo_ket_red Aldo-keto 42.4 2E+02 0.0044 24.0 9.6 96 41-146 97-195 (285)
457 cd01316 CAD_DHOase The eukaryo 42.3 74 0.0016 28.7 6.1 122 25-155 37-184 (344)
458 COG0560 SerB Phosphoserine pho 42.3 1.9E+02 0.0042 24.2 8.2 99 32-160 61-174 (212)
459 PRK08649 inosine 5-monophospha 42.2 1E+02 0.0022 28.4 7.0 71 70-148 118-192 (368)
460 PRK14017 galactonate dehydrata 42.0 24 0.00051 32.0 2.8 57 25-93 228-289 (382)
461 PF00701 DHDPS: Dihydrodipicol 41.7 66 0.0014 27.7 5.5 40 102-141 23-65 (289)
462 PRK11609 nicotinamidase/pyrazi 41.7 79 0.0017 25.9 5.7 65 76-147 134-202 (212)
463 PRK15454 ethanol dehydrogenase 41.6 2E+02 0.0043 26.4 8.8 82 63-149 28-112 (395)
464 PF00704 Glyco_hydro_18: Glyco 41.6 98 0.0021 26.5 6.5 49 79-127 69-128 (343)
465 TIGR01949 AroFGH_arch predicte 41.5 1.1E+02 0.0025 26.0 6.9 122 20-153 67-202 (258)
466 PF13378 MR_MLE_C: Enolase C-t 41.4 28 0.00061 25.4 2.7 53 39-97 6-59 (111)
467 PRK15446 phosphonate metabolis 41.4 65 0.0014 29.2 5.6 62 67-147 211-272 (383)
468 cd00945 Aldolase_Class_I Class 41.3 1.7E+02 0.0036 22.7 8.1 75 70-147 35-117 (201)
469 TIGR03552 F420_cofC 2-phospho- 41.1 1.5E+02 0.0032 23.5 7.1 113 23-138 63-186 (195)
470 PRK10551 phage resistance prot 41.0 75 0.0016 30.2 6.2 95 22-137 407-511 (518)
471 PRK06582 coproporphyrinogen II 40.9 1.7E+02 0.0036 26.9 8.2 114 26-143 64-190 (390)
472 cd01320 ADA Adenosine deaminas 40.7 2.4E+02 0.0052 24.4 10.0 50 39-88 139-191 (325)
473 cd06563 GH20_chitobiase-like T 40.6 29 0.00063 31.3 3.2 93 66-169 82-179 (357)
474 TIGR03699 mena_SCO4550 menaqui 40.6 54 0.0012 29.0 4.9 18 67-84 72-89 (340)
475 PRK06267 hypothetical protein; 40.5 95 0.0021 28.0 6.5 81 53-147 79-170 (350)
476 PRK06256 biotin synthase; Vali 40.5 65 0.0014 28.3 5.3 70 72-145 151-231 (336)
477 COG0474 MgtA Cation transport 40.3 73 0.0016 32.7 6.3 81 58-146 537-641 (917)
478 PF01902 ATP_bind_4: ATP-bindi 40.2 1.3E+02 0.0029 25.6 7.0 22 104-125 124-145 (218)
479 PRK13361 molybdenum cofactor b 40.1 2.5E+02 0.0055 24.7 9.0 102 41-146 76-186 (329)
480 smart00854 PGA_cap Bacterial c 40.1 79 0.0017 26.4 5.6 43 104-146 63-106 (239)
481 TIGR00097 HMP-P_kinase phospho 40.0 63 0.0014 27.1 5.0 40 41-84 53-94 (254)
482 COG2216 KdpB High-affinity K+ 39.9 49 0.0011 32.9 4.7 57 72-146 452-512 (681)
483 PRK14085 imidazolonepropionase 39.9 1.3E+02 0.0029 26.8 7.3 41 47-88 185-225 (382)
484 TIGR02668 moaA_archaeal probab 39.8 97 0.0021 26.6 6.2 69 66-145 39-110 (302)
485 cd07381 MPP_CapA CapA and rela 39.7 78 0.0017 26.3 5.5 44 103-146 66-110 (239)
486 cd08574 GDPD_GDE_2_3_6 Glycero 39.6 1.9E+02 0.0041 24.5 7.9 99 41-147 114-227 (252)
487 COG1004 Ugd Predicted UDP-gluc 39.5 95 0.0021 29.5 6.4 84 58-146 255-346 (414)
488 PLN02795 allantoinase 39.5 3.2E+02 0.007 25.9 10.1 28 127-154 293-321 (505)
489 PF02677 DUF208: Uncharacteriz 39.5 91 0.002 26.2 5.8 93 63-161 31-145 (176)
490 PLN02161 beta-amylase 39.4 65 0.0014 31.5 5.4 68 81-148 89-172 (531)
491 cd00331 IGPS Indole-3-glycerol 39.4 87 0.0019 25.7 5.7 44 105-150 85-128 (217)
492 PRK12581 oxaloacetate decarbox 39.4 65 0.0014 30.9 5.5 44 102-147 106-149 (468)
493 PRK08185 hypothetical protein; 39.4 1.2E+02 0.0027 26.9 6.9 90 56-156 41-134 (283)
494 TIGR01919 hisA-trpF 1-(5-phosp 39.4 1.1E+02 0.0025 26.2 6.6 103 39-153 85-203 (243)
495 PRK10060 RNase II stability mo 39.2 81 0.0018 30.6 6.2 63 110-173 572-643 (663)
496 cd08551 Fe-ADH iron-containing 39.2 1.9E+02 0.0042 25.7 8.2 72 69-146 8-83 (370)
497 PRK05588 histidinol-phosphatas 38.9 1.1E+02 0.0023 25.9 6.3 75 69-146 165-243 (255)
498 PRK06256 biotin synthase; Vali 38.8 74 0.0016 27.9 5.4 68 71-148 127-205 (336)
499 PLN02428 lipoic acid synthase 38.6 30 0.00065 31.8 3.0 54 69-122 261-322 (349)
500 PRK02412 aroD 3-dehydroquinate 38.4 51 0.0011 28.4 4.3 83 44-137 102-186 (253)
No 1
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=100.00 E-value=1.2e-55 Score=379.70 Aligned_cols=142 Identities=37% Similarity=0.651 Sum_probs=120.3
Q ss_pred CCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cH
Q 029925 13 EYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DW 91 (185)
Q Consensus 13 ~l~~R~~KPR~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tl 91 (185)
++|.|++|||++|+|||+|||+ |+++++|+|++||+|||++|||||||+|||+++|++||++||+|||+|||| |+
T Consensus 1 ~~~~R~~KPR~~GlT~v~Dkgl----g~~~~~dlLe~ag~yID~~K~g~Gt~~l~~~~~l~eki~l~~~~gV~v~~GGtl 76 (244)
T PF02679_consen 1 NLPERPEKPRSRGLTMVIDKGL----GLRYLEDLLESAGDYIDFLKFGWGTSALYPEEILKEKIDLAHSHGVYVYPGGTL 76 (244)
T ss_dssp -TTGGG-SS-SSS-EEEEESS------HHHHHHHHHHHGGG-SEEEE-TTGGGGSTCHHHHHHHHHHHCTT-EEEE-HHH
T ss_pred CCCCCCCCCCCCCcEEEecCCC----CHHHHHHHHHHhhhhccEEEecCceeeecCHHHHHHHHHHHHHcCCeEeCCcHH
Confidence 4799999999999999999998 888999999999999999999999999999999999999999999999997 79
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccCCCCCC
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~di~ 160 (185)
||+|++|+ ++++|+++||++||++|||||||++||+++|+++|++++++||+|+||+|+|++..+..
T Consensus 77 ~E~a~~q~--~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~~~~~~ 143 (244)
T PF02679_consen 77 FEVAYQQG--KFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFKVLSEVGKKDPESDFS 143 (244)
T ss_dssp HHHHHHTT---HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSEEEEEES-SSHHHHTT
T ss_pred HHHHHhcC--hHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCEEeecccCCCchhccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999875544
No 2
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=100.00 E-value=2e-50 Score=343.96 Aligned_cols=159 Identities=26% Similarity=0.463 Sum_probs=146.2
Q ss_pred ccCCC-CCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec
Q 029925 9 KSFDE-YEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (185)
Q Consensus 9 ~~f~~-l~~R~~KPR~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (185)
++|.- .|.|++|||.+|+|+|+|||| |++.++|+|++||+|||++||||||+.|.+++++++||++||+|||+||
T Consensus 2 ~aF~f~~~~r~~kPr~~G~T~vldkg~----~p~f~~D~~~vagdyVDfvKfgwGT~~Li~kd~V~ekid~y~e~~i~v~ 77 (258)
T COG1809 2 NAFEFLPPARPEKPRTFGMTVVLDKGL----GPRFVEDVLKVAGDYVDFVKFGWGTSSLIDKDQVKEKIDMYKENDIYVF 77 (258)
T ss_pred CcccccCCCCCCCCccCCeEEEEeCCC----ChHHHHHHHHhhhhheeeeeecccccccccHHHHHHHHHHHHHcCceec
Confidence 45664 467999999999999999999 8889999999999999999999999999999999999999999999999
Q ss_pred Cc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccCC----------
Q 029925 88 TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNK---------- 156 (185)
Q Consensus 88 ~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~---------- 156 (185)
|| |+||+++.|+ ++++|+++|+++||++|||||||++|+.++||++|+++.++||+|+||+|+|.+.
T Consensus 78 pGGtlfe~a~~~~--kvdeyl~e~~~lGfe~iEIS~G~i~m~~eek~~lIe~a~d~Gf~vlsEvGkk~~e~~~~l~~~d~ 155 (258)
T COG1809 78 PGGTLFEIAYSQD--KVDEYLNEAKELGFEAIEISNGTIPMSTEEKCRLIERAVDEGFMVLSEVGKKDPESDSALSPDDR 155 (258)
T ss_pred CCceEEEeehhcc--cHHHHHHHHHHcCccEEEecCCeeecchHHHHHHHHHHHhcccEEehhhcccCcchhhhcChHHH
Confidence 96 8999999999 9999999999999999999999999999999999999999999999999999986
Q ss_pred -----CCCCCccccccccccccCCCCc
Q 029925 157 -----SDIPSDRDRAFGAYVARAPRST 178 (185)
Q Consensus 157 -----~di~~g~d~~~~~~~~~~~~~~ 178 (185)
.|+++|++ ||+--+|-|
T Consensus 156 ~k~i~~dvdaGa~-----~vi~eAres 177 (258)
T COG1809 156 VKLINDDVDAGAE-----YVIAEARES 177 (258)
T ss_pred HHHHHHHHHcchH-----Hhhhhhhhh
Confidence 45667776 665544433
No 3
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=100.00 E-value=1.1e-49 Score=341.54 Aligned_cols=127 Identities=22% Similarity=0.417 Sum_probs=123.4
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHH
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFK 104 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~ 104 (185)
+|||+|||| |+++++|+|++||+|||++||||||++|||+++|+|||++||+|||+|||| ||||+|+.|+ +++
T Consensus 1 lT~v~dkgl----~~~~~~d~Le~~g~yID~lKfg~Gt~~l~~~~~l~eki~la~~~~V~v~~GGtl~E~~~~q~--~~~ 74 (237)
T TIGR03849 1 ITMVLDKGL----PPKFVEDYLKVCGDYITFVKFGWGTSALIDRDIVKEKIEMYKDYGIKVYPGGTLFEIAHSKG--KFD 74 (237)
T ss_pred CceEecCCC----CHHHHHHHHHHhhhheeeEEecCceEeeccHHHHHHHHHHHHHcCCeEeCCccHHHHHHHhh--hHH
Confidence 799999999 888999999999999999999999999999999999999999999999997 6999999998 999
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccCCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~d 158 (185)
+|+++||+|||++|||||||++||+++|+++|++++++||+|+||+|+|+...+
T Consensus 75 ~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~ 128 (237)
T TIGR03849 75 EYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKD 128 (237)
T ss_pred HHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCccc
Confidence 999999999999999999999999999999999999999999999999998543
No 4
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=96.44 E-value=0.0079 Score=54.30 Aligned_cols=90 Identities=20% Similarity=0.440 Sum_probs=69.4
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE---- 126 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~---- 126 (185)
..|+-|-||+||-.+.|.+.|++.++..+++.. .|+.+.-+|+.+ ++.++.++++||+.|.|.--|.+
T Consensus 57 ~~i~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~-------~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L 129 (370)
T PRK06294 57 HFIDTVFFGGGTPSLVPPALIQDILKTLEAPHA-------TEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLL 129 (370)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHhCCC-------CeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHH
Confidence 458899999999999999999999999987622 133333456665 78899999999999988776662
Q ss_pred ------CChhHHHHHHHHHHHCCCe-ecc
Q 029925 127 ------IPEETLLRYVRLVKSAGLK-AKP 148 (185)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~-v~~ 148 (185)
-+.++-.+.|+.+++.||. |..
T Consensus 130 ~~l~R~~~~~~~~~ai~~~~~~g~~~v~~ 158 (370)
T PRK06294 130 KLLGRTHSSSKAIDAVQECSEHGFSNLSI 158 (370)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 2445666788999999996 533
No 5
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=96.32 E-value=0.014 Score=52.24 Aligned_cols=88 Identities=19% Similarity=0.379 Sum_probs=65.4
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (185)
-|+.|-||+||..+.+.+.+++.++..+++ +..+ .|+.+.-+|+.+ ++.++.+++.||+.|.|+--|.+
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~---~~~~--~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~ 125 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPY---LSKD--CEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLK 125 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHh---cCCC--ceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHH
Confidence 588999999999999999999999998887 2223 244443344443 68888899999999888766652
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 029925 127 -----IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+.++-.+.|+.+++.||.
T Consensus 126 ~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 126 FLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3455666788889999986
No 6
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=95.86 E-value=0.026 Score=50.75 Aligned_cols=93 Identities=19% Similarity=0.283 Sum_probs=69.4
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL---- 125 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti---- 125 (185)
.-|+-+-||+||..+.+.+.|++.++.++++ ++.. . .|..+.-+|+.+ ++.++.++++||+.|.|.--|.
T Consensus 58 ~~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~--~--~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~ 133 (375)
T PRK05628 58 PPVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAP--G--AEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHV 133 (375)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCC--C--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH
Confidence 4589999999999999999999999999874 4422 1 133332234443 5789999999999999877666
Q ss_pred ------cCChhHHHHHHHHHHHCCCe-ecc
Q 029925 126 ------EIPEETLLRYVRLVKSAGLK-AKP 148 (185)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~-v~~ 148 (185)
..+.++-.+.++.+++.||. |..
T Consensus 134 L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~ 163 (375)
T PRK05628 134 LAVLDRTHTPGRAVAAAREARAAGFEHVNL 163 (375)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCCcEEE
Confidence 24566677889999999998 633
No 7
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=95.66 E-value=0.015 Score=49.32 Aligned_cols=58 Identities=24% Similarity=0.401 Sum_probs=47.6
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeecc
Q 029925 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
|++|+++.++ -.+++.++.++++||++||++-.. ..++.++..++-+.+++.|+++..
T Consensus 11 ~~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 11 GIYEKALPAG-ECWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred eeecccCCCC-CCHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCceeE
Confidence 7889999765 479999999999999999998543 244777788888889999999843
No 8
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=95.34 E-value=0.062 Score=48.52 Aligned_cols=90 Identities=14% Similarity=0.244 Sum_probs=68.9
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (185)
..++-|=||+||..+.+.+.|++.++.++++ + .++ .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~-~--~~~--~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL 129 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPY-V--DNN--CEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNIL 129 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHh-c--CCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 5588899999999999999999999999987 2 222 244554555554 6889999999999988876655
Q ss_pred -----cCChhHHHHHHHHHHHCCCe-e
Q 029925 126 -----EIPEETLLRYVRLVKSAGLK-A 146 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~-v 146 (185)
.-+.++-.+.|+.+++.||. |
T Consensus 130 ~~l~R~~~~~~~~~ai~~lr~~G~~~v 156 (353)
T PRK05904 130 KQLNRTHTIQDSKEAINLLHKNGIYNI 156 (353)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCCcE
Confidence 34556667889999999986 5
No 9
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=95.34 E-value=0.045 Score=48.96 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=62.3
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE----- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~----- 126 (185)
-|+.|=||+||-.+.+.+.|.+.++..+++- .+..+ .|+.+.-+|+.+ ++.++.++++|++.|.|+--+.+
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~-~~~~~--~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~ 127 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHA-SLSDD--CEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLL 127 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHH
Confidence 4788889999999888888888888877531 11111 233333344343 57778888889888888766652
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 029925 127 -----IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+.++-.+.|+.+++.||.
T Consensus 128 ~lgR~~~~~~~~~ai~~l~~~G~~ 151 (360)
T TIGR00539 128 FLGRQHSAKNIAPAIETALKSGIE 151 (360)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCCC
Confidence 4556777888888888885
No 10
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=95.11 E-value=0.042 Score=50.22 Aligned_cols=92 Identities=22% Similarity=0.387 Sum_probs=68.8
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCcc-----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti----- 125 (185)
.-|+-|=||+||..+.|.+.|++.++..+++ +.+.+. .|+.+.-+|+.+ ++.++.+++.|++.|.|.--|.
T Consensus 65 ~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~-~~~~~~--~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L 141 (400)
T PRK07379 65 QPLQTVFFGGGTPSLLSVEQLERILTTLDQR-FGIAPD--AEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELL 141 (400)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHh-CCCCCC--CEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHH
Confidence 4589999999999999999999999999876 222221 233333344443 5788999999999988876655
Q ss_pred -----cCChhHHHHHHHHHHHCCCe-e
Q 029925 126 -----EIPEETLLRYVRLVKSAGLK-A 146 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~-v 146 (185)
..+.++-.+.++.+++.||. |
T Consensus 142 ~~l~R~~~~~~~~~ai~~l~~~G~~~v 168 (400)
T PRK07379 142 ALCGRSHRVKDIFAAVDLIHQAGIENF 168 (400)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCeE
Confidence 35666777889999999998 5
No 11
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.12 Score=47.12 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=65.3
Q ss_pred HHHHHHHhhcccccEEeeeCc-----ccc-cCChhHHHHHHHHHHhCCceecC-c-cHHHHHHHhCCchHHHHHHHHHHc
Q 029925 42 VLEDIFESMGQFVDGLKFSGG-----SHS-LMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQV 113 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~G-----Ts~-l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~qg~~~~~~yl~~~k~l 113 (185)
.++++-.......|-|=+|.- ..+ -++.+.|++-|+++|+||+++|- . +++-..-.. .+.+|++.+.++
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~---~~~~~l~~l~e~ 91 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELE---TLERYLDRLVEL 91 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhh---HHHHHHHHHHHc
Confidence 555555554444788777743 122 24556699999999999997765 4 543322222 478999999999
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCC--Cee
Q 029925 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAG--LKA 146 (185)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~G--f~v 146 (185)
|.|+|+++| .-+|..+++.+ +.+
T Consensus 92 GvDaviv~D----------pg~i~l~~e~~p~l~i 116 (347)
T COG0826 92 GVDAVIVAD----------PGLIMLARERGPDLPI 116 (347)
T ss_pred CCCEEEEcC----------HHHHHHHHHhCCCCcE
Confidence 999999999 57888888887 655
No 12
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=94.95 E-value=0.1 Score=47.30 Aligned_cols=89 Identities=22% Similarity=0.315 Sum_probs=57.8
Q ss_pred cccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC--------c-cHHHHHHHhCCc----hHHHHHHHHHHcCCCE
Q 029925 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--------G-DWAEHLIRNGPS----AFKEYVEDCKQVGFDT 117 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--------G-tlfE~al~qg~~----~~~~yl~~~k~lGF~~ 117 (185)
=+|||.. .-|+-+++..+ =..-|+.||+|||+|.+ + .+++.++.++++ -+++.++.|+.+|||.
T Consensus 30 W~yvD~f-vywsh~~~~iP--p~~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDG 106 (339)
T cd06547 30 WQYVDTF-VYFSHSAVTIP--PADWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDG 106 (339)
T ss_pred hhhhhee-ecccCccccCC--CcHHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCc
Confidence 3688887 44555444433 24668899999999973 2 366777765221 2788999999999999
Q ss_pred EEecCCcccCChhHHHH---HHHHHHHC
Q 029925 118 IELNVGSLEIPEETLLR---YVRLVKSA 142 (185)
Q Consensus 118 IEISdGti~i~~~~r~~---lI~~~~~~ 142 (185)
+=|+-=+.--+.+.+.+ .++.+++.
T Consensus 107 w~iN~E~~~~~~~~~~~l~~F~~~L~~~ 134 (339)
T cd06547 107 WLINIETELGDAEKAKRLIAFLRYLKAK 134 (339)
T ss_pred eEeeeeccCCcHHHHHHHHHHHHHHHHH
Confidence 88876665423344333 44444444
No 13
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=94.93 E-value=0.085 Score=48.82 Aligned_cols=90 Identities=21% Similarity=0.415 Sum_probs=66.4
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (185)
-|.-|-||+||..+.+.+.|.+.++.++++ ..+..+ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~-~~~~~~--~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~ 178 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIREN-FPFNAD--AEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQ 178 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHh-CCCCCC--CeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHH
Confidence 477889999999999999999999999986 111111 12222222323 367899999999999999866653
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 029925 127 -----IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+.++-.+.|+.+++.||+
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~~ 202 (455)
T TIGR00538 179 AVNRIQPEEMIFELMNHAREAGFT 202 (455)
T ss_pred HhCCCCCHHHHHHHHHHHHhcCCC
Confidence 3556667899999999996
No 14
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=94.89 E-value=0.06 Score=45.42 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=41.1
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeec
Q 029925 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
|.|+..+-++ -.+++.++.++++||+.||++-.. ...+.++..++-+.+++.|+++.
T Consensus 6 g~~~~~~~~~-~~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~ 69 (284)
T PRK13210 6 GIYEKALPKH-LSWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIP 69 (284)
T ss_pred chhhhhcCCC-CCHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCce
Confidence 4456666442 368889999999999999997321 24456677788888889998874
No 15
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=94.83 E-value=0.1 Score=45.42 Aligned_cols=108 Identities=13% Similarity=0.079 Sum_probs=84.1
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (185)
.=+..+.+++- ...+|+......-||.+.+++..+.+ +.+++-++.++++|..|..+ +|.+....++.+
T Consensus 72 ~~~~~~~~~~~------~~~~~l~~a~~~gv~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~--~~~a~~~~~~~~ 140 (266)
T cd07944 72 TKIAVMVDYGN------DDIDLLEPASGSVVDMIRVAFHKHEF---DEALPLIKAIKEKGYEVFFN--LMAISGYSDEEL 140 (266)
T ss_pred CEEEEEECCCC------CCHHHHHHHhcCCcCEEEEecccccH---HHHHHHHHHHHHCCCeEEEE--EEeecCCCHHHH
Confidence 44555555552 14567777777889999999876643 55999999999999988864 111122445688
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++++.+.+.|.+.|-|.|-.-.+.+++-.++++.++++
T Consensus 141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999875
No 16
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=94.79 E-value=0.11 Score=48.30 Aligned_cols=89 Identities=24% Similarity=0.441 Sum_probs=65.9
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (185)
-|.-|=||+||..+.|.+.|++.++.++++ ++ ..+ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~--~~~--~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl 178 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDF--APE--AEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQ 178 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCC--CCC--ceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHH
Confidence 367788999999999999999999999885 22 111 13222223333 378899999999999999876663
Q ss_pred ------CChhHHHHHHHHHHHCCCe
Q 029925 127 ------IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+.++-.+.|+.+++.||.
T Consensus 179 ~~l~R~~~~~~~~~ai~~lr~~G~~ 203 (453)
T PRK13347 179 KAINRIQPEEMVARAVELLRAAGFE 203 (453)
T ss_pred HHhCCCCCHHHHHHHHHHHHhcCCC
Confidence 4666778899999999986
No 17
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=94.62 E-value=0.17 Score=45.59 Aligned_cols=108 Identities=11% Similarity=0.044 Sum_probs=84.6
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (185)
.=+++++.||. + ..+|+-.....-||.+.+.. .....+.+++-|+.+|++|..++.. ++.+....++.+
T Consensus 78 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~---~~~e~~~~~~~i~~ak~~G~~v~~~--l~~a~~~~~e~l 146 (337)
T PRK08195 78 AKIAALLLPGI----G--TVDDLKMAYDAGVRVVRVAT---HCTEADVSEQHIGLARELGMDTVGF--LMMSHMAPPEKL 146 (337)
T ss_pred CEEEEEeccCc----c--cHHHHHHHHHcCCCEEEEEE---ecchHHHHHHHHHHHHHCCCeEEEE--EEeccCCCHHHH
Confidence 45677788875 2 34676666677899999886 3455677999999999999987763 222333444577
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.++|.+.|-|.|-.-.+.+++-.++|+.++++
T Consensus 147 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 185 (337)
T PRK08195 147 AEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAA 185 (337)
T ss_pred HHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 788888999999999999999999999999999999876
No 18
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=94.43 E-value=0.19 Score=43.83 Aligned_cols=106 Identities=12% Similarity=0.121 Sum_probs=79.1
Q ss_pred CCCCCCcchhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHH
Q 029925 32 PHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 32 kG~s~~~g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~ 109 (185)
+|+... ..+..++.++.+.+. +|.+-+....+-+ +.+++-|+.++++|..+... .. +.+-...++.+.++.+.
T Consensus 83 ~~~~~~-p~~~~~~di~~~~~~g~~~iri~~~~~~~---~~~~~~i~~ak~~G~~v~~~i~~-~~~~~~~~~~~~~~~~~ 157 (275)
T cd07937 83 VGYRHY-PDDVVELFVEKAAKNGIDIFRIFDALNDV---RNLEVAIKAVKKAGKHVEGAICY-TGSPVHTLEYYVKLAKE 157 (275)
T ss_pred cCccCC-CcHHHHHHHHHHHHcCCCEEEEeecCChH---HHHHHHHHHHHHCCCeEEEEEEe-cCCCCCCHHHHHHHHHH
Confidence 444333 334567777776665 8999998766553 56999999999999876642 11 01112234577888889
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.++|.+.|-|.|-.-.+.+++-.++|+.++++
T Consensus 158 ~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (275)
T cd07937 158 LEDMGADSICIKDMAGLLTPYAAYELVKALKKE 190 (275)
T ss_pred HHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999886
No 19
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=94.40 E-value=0.085 Score=48.84 Aligned_cols=89 Identities=20% Similarity=0.356 Sum_probs=65.2
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE----- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~----- 126 (185)
-|+.+=||+||..+.+.+.|.+.++.++++- .+.++ .|+.+.-+|+. -++.++.+++.|++.|.|+--+.+
T Consensus 102 ~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~ 178 (453)
T PRK09249 102 PVSQLHWGGGTPTFLSPEQLRRLMALLREHF-NFAPD--AEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQK 178 (453)
T ss_pred ceEEEEECCcccccCCHHHHHHHHHHHHHhC-CCCCC--CEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHH
Confidence 4889999999999999999999999998761 11112 12222222323 368888899999999998866663
Q ss_pred -----CChhHHHHHHHHHHHCCC
Q 029925 127 -----IPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf 144 (185)
-+.++-.+.|+.+++.||
T Consensus 179 ~l~r~~~~~~~~~ai~~l~~~G~ 201 (453)
T PRK09249 179 AVNRIQPFEFTFALVEAARELGF 201 (453)
T ss_pred HhCCCCCHHHHHHHHHHHHHcCC
Confidence 566677789999999998
No 20
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=94.37 E-value=0.13 Score=47.31 Aligned_cols=91 Identities=14% Similarity=0.269 Sum_probs=66.1
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc------
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE------ 126 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~------ 126 (185)
|.-+=||+||-.+.+.+.|++-++.++++- .+.++. .|+.+.-+|+.+ ++.++.++++||+.|.|+--|.+
T Consensus 92 i~~i~~GGGTPs~l~~~~l~~Ll~~i~~~~-~~~~~~-~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~ 169 (430)
T PRK08208 92 FASFAVGGGTPTLLNAAELEKLFDSVERVL-GVDLGN-IPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHA 169 (430)
T ss_pred eeEEEEcCCccccCCHHHHHHHHHHHHHhC-CCCCCC-ceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHH
Confidence 667889999999999999999999987642 122211 133333334343 78899999999999999877662
Q ss_pred ----CChhHHHHHHHHHHHCCCee
Q 029925 127 ----IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 127 ----i~~~~r~~lI~~~~~~Gf~v 146 (185)
-+.++-.+.|+.+++.||.+
T Consensus 170 l~R~~~~~~~~~ai~~l~~~g~~~ 193 (430)
T PRK08208 170 LHRPQKRADVHQALEWIRAAGFPI 193 (430)
T ss_pred hCCCCCHHHHHHHHHHHHHcCCCe
Confidence 24556678899999999974
No 21
>PRK05660 HemN family oxidoreductase; Provisional
Probab=94.30 E-value=0.094 Score=47.54 Aligned_cols=92 Identities=18% Similarity=0.291 Sum_probs=68.3
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCccc----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSLE---- 126 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti~---- 126 (185)
.-|+-|=||+||..+.+.+.|.+.++.++++= .+.++ .|+.+.-+|+. -++.++.++++||+.|.|+--+.+
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~-~~~~~--~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L 133 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARL-PFAPD--AEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKL 133 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhC-CCCCC--cEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHH
Confidence 45899999999999999999999999998741 11111 23333333333 347888899999999998876663
Q ss_pred ------CChhHHHHHHHHHHHCCCee
Q 029925 127 ------IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v 146 (185)
-+.++-.+.|+.+++.||..
T Consensus 134 ~~l~r~~~~~~~~~ai~~~~~~G~~~ 159 (378)
T PRK05660 134 KRLGRIHGPDEAKRAAKLAQGLGLRS 159 (378)
T ss_pred HHhCCCCCHHHHHHHHHHHHHcCCCe
Confidence 35667778899999999963
No 22
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=93.91 E-value=0.31 Score=43.95 Aligned_cols=108 Identities=11% Similarity=0.040 Sum_probs=84.1
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (185)
.=+++++.||. + ..+|+=.....-||.+-+... ....+.+++-|+.+|+.|..++.. ++.+....++.+
T Consensus 77 ~~~~~ll~pg~----~--~~~dl~~a~~~gvd~iri~~~---~~e~d~~~~~i~~ak~~G~~v~~~--l~~s~~~~~e~l 145 (333)
T TIGR03217 77 AKVAVLLLPGI----G--TVHDLKAAYDAGARTVRVATH---CTEADVSEQHIGMARELGMDTVGF--LMMSHMTPPEKL 145 (333)
T ss_pred CEEEEEeccCc----c--CHHHHHHHHHCCCCEEEEEec---cchHHHHHHHHHHHHHcCCeEEEE--EEcccCCCHHHH
Confidence 45788888885 2 345655555567999998863 455677999999999999877642 222334455678
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
-++.+.+.+.|.+.|-|.|-.-.+.+++-.++|+.++++
T Consensus 146 ~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~ 184 (333)
T TIGR03217 146 AEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAV 184 (333)
T ss_pred HHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999999876
No 23
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=93.83 E-value=0.73 Score=41.12 Aligned_cols=109 Identities=12% Similarity=0.208 Sum_probs=75.9
Q ss_pred chhHHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQ 112 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~ 112 (185)
.+.++.+.++.+-+ .+.-+-|..|.....+.+.+.+-++..+++ ++.++.-|=.|+.+ .-| -..++.++.+|+
T Consensus 71 s~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g-~~~~e~l~~Lke 149 (343)
T TIGR03551 71 SLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSG-LSVEEALKRLKE 149 (343)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 44455555544433 366788888877767788889999999988 46655434455432 222 346899999999
Q ss_pred cCCCEEE-ecCCcc-----------cCChhHHHHHHHHHHHCCCeecc
Q 029925 113 VGFDTIE-LNVGSL-----------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 113 lGF~~IE-ISdGti-----------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.|++.+- .+.-+. .++.++|.+.|+.+++.|+++..
T Consensus 150 AGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s 197 (343)
T TIGR03551 150 AGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTA 197 (343)
T ss_pred hCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccc
Confidence 9999884 222222 36788999999999999999844
No 24
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=93.63 E-value=0.27 Score=45.02 Aligned_cols=92 Identities=17% Similarity=0.355 Sum_probs=69.6
Q ss_pred cccccEEeeeCcccccCChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCCchH-HHHHHHHHHcCCCEEEecCCccc--
Q 029925 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAF-KEYVEDCKQVGFDTIELNVGSLE-- 126 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~~~~-~~yl~~~k~lGF~~IEISdGti~-- 126 (185)
+..|+-|=||+||-.+.+.+.|++.++.++++. +. .-.|+.+.-+|+.+ ++.++.++++|++.|.|.--|.+
T Consensus 60 ~~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~----~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~ 135 (390)
T PRK06582 60 NKYIKSIFFGGGTPSLMNPVIVEGIINKISNLAIID----NQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSLKED 135 (390)
T ss_pred CCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCC----CCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHH
Confidence 346999999999999999999999999999863 21 11244444466665 78999999999999988766652
Q ss_pred --------CChhHHHHHHHHHHHCCCee
Q 029925 127 --------IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 127 --------i~~~~r~~lI~~~~~~Gf~v 146 (185)
-+.++-.+.++.+++.+..|
T Consensus 136 ~L~~lgR~h~~~~~~~ai~~~~~~~~~v 163 (390)
T PRK06582 136 DLKKLGRTHDCMQAIKTIEAANTIFPRV 163 (390)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHhCCcE
Confidence 24556667888888875556
No 25
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=93.55 E-value=0.23 Score=44.44 Aligned_cols=89 Identities=13% Similarity=0.259 Sum_probs=57.2
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCc-hHHHHHHHHHHcCCCEEEecCCccc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-AFKEYVEDCKQVGFDTIELNVGSLE----- 126 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~-~~~~yl~~~k~lGF~~IEISdGti~----- 126 (185)
-++.|=||.||..+.+.+.+++-.+..+++++. ++ .|+.+.-+|+ --++.++.++++|++.|.|+--|.+
T Consensus 51 ~~~~i~~gGGtps~l~~~~l~~L~~~i~~~~~~--~~--~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~ 126 (374)
T PRK05799 51 KIKSIFIGGGTPTYLSLEALEILKETIKKLNKK--ED--LEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLK 126 (374)
T ss_pred ceeEEEECCCcccCCCHHHHHHHHHHHHhCCCC--CC--CEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHH
Confidence 367788888888888887787777777655432 12 1222222222 2357788888888888777655542
Q ss_pred -----CChhHHHHHHHHHHHCCCe
Q 029925 127 -----IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 127 -----i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+.++-.+.|+.+++.||.
T Consensus 127 ~l~R~~~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 127 YLGRIHTFEEFLENYKLARKLGFN 150 (374)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCCC
Confidence 2445566778888888875
No 26
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=93.49 E-value=0.3 Score=41.83 Aligned_cols=97 Identities=22% Similarity=0.265 Sum_probs=73.8
Q ss_pred HHHHHhhcccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHH
Q 029925 44 EDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ 112 (185)
Q Consensus 44 eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~ 112 (185)
+|+=......+|.+.+...+|-.+.. +.+++-++.++++|..|..+- |.+-...++.+.+..+.+.+
T Consensus 73 ~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~~~~ 150 (259)
T cd07939 73 EDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGA--EDASRADPDFLIEFAEVAQE 150 (259)
T ss_pred HHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEee--ccCCCCCHHHHHHHHHHHHH
Confidence 33333334468999998877765422 347789999999999888763 22223345578888888899
Q ss_pred cCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 113 VGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 113 lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.|.+.|-|.|-.-.+.+++-.++|+.+++.
T Consensus 151 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 180 (259)
T cd07939 151 AGADRLRFADTVGILDPFTTYELIRRLRAA 180 (259)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999876
No 27
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=93.48 E-value=0.13 Score=43.72 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=40.5
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeec
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
|+.++.++ -.+.+-++.++++||++|||+-+. .+++.++...+-+.+++.|+++.
T Consensus 8 ~~~~~~~~-~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 8 YEKALPKG-ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred ehhhCCCC-CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 44555532 267788888999999999997443 35567788888888999999874
No 28
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=93.44 E-value=0.13 Score=46.59 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=68.4
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHH-HHHHHHHHcCCCEEEecCCccc----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFK-EYVEDCKQVGFDTIELNVGSLE---- 126 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~-~yl~~~k~lGF~~IEISdGti~---- 126 (185)
.-|+-|=||+||..+.|.+.|++.++.++++= ++.+ -.|+.+.-+|+.++ +.++.+++.||+.|.|---|.+
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f-~~~~--~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL 130 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLW-PVAD--DIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADL 130 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhC-CCCC--CccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 35889999999999999999999999998731 1111 13554444555554 8999999999999888655542
Q ss_pred ------CChhHHHHHHHHHHHCCCeeccc
Q 029925 127 ------IPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 127 ------i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
-+.++-.+.|+.+++.+..|...
T Consensus 131 ~~l~R~~~~~~~~~ai~~~~~~~~~v~~d 159 (380)
T PRK09057 131 RFLGRLHSVAEALAAIDLAREIFPRVSFD 159 (380)
T ss_pred HHcCCCCCHHHHHHHHHHHHHhCccEEEE
Confidence 24555667888888887767443
No 29
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=93.44 E-value=0.9 Score=40.80 Aligned_cols=89 Identities=20% Similarity=0.317 Sum_probs=59.2
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (185)
-|+-+=||+||..+.+.+.|++.++.++++ ++.. ..|+.+.-+|+. -++.++.+++.|++.|.|+--|.
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~----~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l 126 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSG----LEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELL 126 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHH
Confidence 366677788888888878888888888875 2210 012221122222 25777788888888888876666
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 029925 126 -----EIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (185)
..+.++..+.|+.+++.||.
T Consensus 127 ~~l~r~~~~~~~~~~i~~l~~~g~~ 151 (377)
T PRK08599 127 KKIGRTHNEEDVYEAIANAKKAGFD 151 (377)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 24566777888888888876
No 30
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=93.07 E-value=0.42 Score=41.75 Aligned_cols=106 Identities=14% Similarity=0.211 Sum_probs=71.7
Q ss_pred chhHHHHHHH-hhcccccEEeeeCccc-ccCChhHHHH-----------------HHHHHH--hCCceecCccHHHHHHH
Q 029925 39 SHNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIEE-----------------VVKRAH--QHDVYVSTGDWAEHLIR 97 (185)
Q Consensus 39 g~~~~eDlLe-~ag~yID~lKfg~GTs-~l~p~~~L~e-----------------KI~l~~--~~gV~v~~GtlfE~al~ 97 (185)
.++.+.+++. ..-.-+|+|=+|+=.| .+.+-..+++ .++-.+ ..++++..=|++...++
T Consensus 24 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~ 103 (258)
T PRK13111 24 DLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQ 103 (258)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhh
Confidence 3344555333 4445699999997542 1222222222 222222 23555444477888887
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccc
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
+| +++|++.|++.|++.+=|- +||.++..++++.+++.|+...+-+-
T Consensus 104 ~G---~e~f~~~~~~aGvdGviip----DLp~ee~~~~~~~~~~~gl~~I~lva 150 (258)
T PRK13111 104 YG---VERFAADAAEAGVDGLIIP----DLPPEEAEELRAAAKKHGLDLIFLVA 150 (258)
T ss_pred cC---HHHHHHHHHHcCCcEEEEC----CCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 75 9999999999999999996 68999999999999999999865333
No 31
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=92.99 E-value=0.46 Score=40.79 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=81.0
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAF 103 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~ 103 (185)
.-++++..++. + ..+|+-.....-+|.+-+..-.+- .+.+++-++.+|++|..+...- |.+....++.+
T Consensus 75 ~~~~~~~~~~~----~--~~~~i~~a~~~g~~~iri~~~~s~---~~~~~~~i~~ak~~G~~v~~~~--~~~~~~~~~~~ 143 (263)
T cd07943 75 AKLGVLLLPGI----G--TVDDLKMAADLGVDVVRVATHCTE---ADVSEQHIGAARKLGMDVVGFL--MMSHMASPEEL 143 (263)
T ss_pred CEEEEEecCCc----c--CHHHHHHHHHcCCCEEEEEechhh---HHHHHHHHHHHHHCCCeEEEEE--EeccCCCHHHH
Confidence 34555666654 2 245655556667999888765443 3569999999999999776531 22233344578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.+.|.+.|-+.|-+-.+.+++-.++++.++++
T Consensus 144 ~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~ 182 (263)
T cd07943 144 AEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREA 182 (263)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 888899999999999999999999999999999999886
No 32
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=92.93 E-value=1.6 Score=37.64 Aligned_cols=94 Identities=22% Similarity=0.401 Sum_probs=56.7
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCc-e--ecC-ccHHHHHHHhCCchHHHHHHHHHHc
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQV 113 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~--v~~-GtlfE~al~qg~~~~~~yl~~~k~l 113 (185)
...++..+++.+.++ +..|.|.+|--.+.+. +.+.++.++++|+ . +.+ |++++ ++++.+++.
T Consensus 41 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~iv~~l~~~g~~~v~i~TNG~ll~-----------~~~~~l~~~ 107 (302)
T TIGR02668 41 SPEEIERIVRVASEFGVRKVKITGGEPLLRKD--LIEIIRRIKDYGIKDVSMTTNGILLE-----------KLAKKLKEA 107 (302)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECcccccccC--HHHHHHHHHhCCCceEEEEcCchHHH-----------HHHHHHHHC
Confidence 555777777765554 7889999898877765 7789999998876 3 344 65443 223334555
Q ss_pred CCCEEEecCCccc----------CChhHHHHHHHHHHHCCCe
Q 029925 114 GFDTIELNVGSLE----------IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 114 GF~~IEISdGti~----------i~~~~r~~lI~~~~~~Gf~ 145 (185)
|++.|-||=-+.+ -+.+.-.+-|+.+++.|+.
T Consensus 108 g~~~v~iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~ 149 (302)
T TIGR02668 108 GLDRVNVSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLT 149 (302)
T ss_pred CCCEEEEEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCC
Confidence 5555555544331 1233444555555555543
No 33
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=92.61 E-value=0.43 Score=45.19 Aligned_cols=93 Identities=18% Similarity=0.296 Sum_probs=68.0
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHh-CCc-hHHHHHHHHHHcCCCEEEecCCccc---
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN-GPS-AFKEYVEDCKQVGFDTIELNVGSLE--- 126 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q-g~~-~~~~yl~~~k~lGF~~IEISdGti~--- 126 (185)
.-|+.+=||+||-.+.+.+.|.+.++.++++-..+. ..-|+.+.. .|+ --++.++.+++.|++.|.|+--|.+
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~--~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~v 294 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVK--NVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDET 294 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccC--CceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHH
Confidence 358889999999999999999999999877521110 111333322 222 2367888999999999998877764
Q ss_pred -------CChhHHHHHHHHHHHCCC-ee
Q 029925 127 -------IPEETLLRYVRLVKSAGL-KA 146 (185)
Q Consensus 127 -------i~~~~r~~lI~~~~~~Gf-~v 146 (185)
-+.++-.+.++.+++.|| .+
T Consensus 295 Lk~igR~ht~e~v~~ai~~ar~~Gf~~I 322 (488)
T PRK08207 295 LKAIGRHHTVEDIIEKFHLAREMGFDNI 322 (488)
T ss_pred HHHhCCCCCHHHHHHHHHHHHhCCCCeE
Confidence 577888899999999999 45
No 34
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=92.43 E-value=0.34 Score=43.11 Aligned_cols=56 Identities=27% Similarity=0.459 Sum_probs=45.0
Q ss_pred HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc-------ccCChhHHHHHHHHHHHCCCeec
Q 029925 91 WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS-------LEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 91 lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt-------i~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
..|.|+-.+ -+..+=+..+|++|||.||+|-.- ++-+.++|..+++...+.|+.+-
T Consensus 9 IYEKAlp~~-~sW~erl~~AK~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ip 71 (287)
T COG3623 9 IYEKALPNG-FSWLERLALAKELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIP 71 (287)
T ss_pred eehhhccCC-CCHHHHHHHHHHcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCcc
Confidence 346666554 356677788999999999999753 58899999999999999998873
No 35
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=92.30 E-value=0.67 Score=41.15 Aligned_cols=110 Identities=14% Similarity=0.162 Sum_probs=79.1
Q ss_pred chhHHHHHHHh-hcccccEEeeeCcccc-cCC-----------------hhHHHHHHHHHHhCCceecCc--cHHHHHHH
Q 029925 39 SHNVLEDIFES-MGQFVDGLKFSGGSHS-LMP-----------------KPFIEEVVKRAHQHDVYVSTG--DWAEHLIR 97 (185)
Q Consensus 39 g~~~~eDlLe~-ag~yID~lKfg~GTs~-l~p-----------------~~~L~eKI~l~~~~gV~v~~G--tlfE~al~ 97 (185)
++..+.+++.. --.-.|++=||+=.|= +++ .+..-+.++..++.++.+.-+ |+.--.+.
T Consensus 29 ~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~ 108 (265)
T COG0159 29 DLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFN 108 (265)
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHH
Confidence 34455555554 4455899999986551 222 123445666777666765555 78888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
+| ++.|++.|++.|++.+=| .+||.|+..++...++++|+..++-+--..+
T Consensus 109 ~G---ie~F~~~~~~~GvdGliv----pDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~ 159 (265)
T COG0159 109 YG---IEKFLRRAKEAGVDGLLV----PDLPPEESDELLKAAEKHGIDPIFLVAPTTP 159 (265)
T ss_pred hh---HHHHHHHHHHcCCCEEEe----CCCChHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 85 999999999999999876 5799999999999999999998664443333
No 36
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=92.15 E-value=0.62 Score=42.39 Aligned_cols=99 Identities=18% Similarity=0.387 Sum_probs=74.0
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
.+.++..+...+..+ |+=||+.+|=-.|=.. |.+.|+..+++++ .|+++.-|.-.+..+.+.+|+.|++.
T Consensus 44 s~eei~~~~~~~~~~Gv~kvRlTGGEPllR~d--l~eIi~~l~~~~~-------~~islTTNG~~L~~~a~~Lk~AGl~r 114 (322)
T COG2896 44 SLEEIRRLVRAFAELGVEKVRLTGGEPLLRKD--LDEIIARLARLGI-------RDLSLTTNGVLLARRAADLKEAGLDR 114 (322)
T ss_pred CHHHHHHHHHHHHHcCcceEEEeCCCchhhcC--HHHHHHHHhhccc-------ceEEEecchhhHHHHHHHHHHcCCcE
Confidence 677888888888888 8899999999877655 9999999999833 34444433344667777799999999
Q ss_pred EEecCCccc------CC----hhHHHHHHHHHHHCCCe-e
Q 029925 118 IELNVGSLE------IP----EETLLRYVRLVKSAGLK-A 146 (185)
Q Consensus 118 IEISdGti~------i~----~~~r~~lI~~~~~~Gf~-v 146 (185)
|-||--|++ |. .+.=.+=|+.|.+.||. |
T Consensus 115 VNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pV 154 (322)
T COG2896 115 VNVSLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPV 154 (322)
T ss_pred EEeecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCce
Confidence 999988763 22 12233567899999997 5
No 37
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=92.00 E-value=0.55 Score=40.80 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=67.8
Q ss_pred cccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCc-c-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~G-t-lfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
..-+|.+.+...+|-.+.. +.+++-++++|++|..|+.+ . +++. ..-.++.+.++++.+.+.|.+.
T Consensus 89 ~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~-~~~~~~~~~~~~~~~~~~g~~~ 167 (273)
T cd07941 89 EAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDG-YKANPEYALATLKAAAEAGADW 167 (273)
T ss_pred hCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEecccc-CCCCHHHHHHHHHHHHhCCCCE
Confidence 3356777776665543222 24688999999999988875 2 3331 1223446777788889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHC
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|-|.|-.-.+.+++-.++++.++++
T Consensus 168 i~l~DT~G~~~P~~v~~lv~~l~~~ 192 (273)
T cd07941 168 LVLCDTNGGTLPHEIAEIVKEVRER 192 (273)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999886
No 38
>PLN02591 tryptophan synthase
Probab=91.91 E-value=0.71 Score=40.29 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=69.1
Q ss_pred hhHHHHHHH-hhcccccEEeeeCccc-ccCChhHHH--------------HHHHHHHh----CCceecCccHHHHHHHhC
Q 029925 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKPFIE--------------EVVKRAHQ----HDVYVSTGDWAEHLIRNG 99 (185)
Q Consensus 40 ~~~~eDlLe-~ag~yID~lKfg~GTs-~l~p~~~L~--------------eKI~l~~~----~gV~v~~GtlfE~al~qg 99 (185)
++.+.+++. ..-..+|+|=+|+=.| .+.+-..++ +-.++.++ ..+++..=|++...+..|
T Consensus 15 ~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G 94 (250)
T PLN02591 15 LDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRG 94 (250)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhH
Confidence 334444333 3345599999997443 122222222 22222222 455444337777777764
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+++|++.|++.|++.+=|- +||.++..++++.++++|+..++-+
T Consensus 95 ---~~~F~~~~~~aGv~Gviip----DLP~ee~~~~~~~~~~~gl~~I~lv 138 (250)
T PLN02591 95 ---IDKFMATIKEAGVHGLVVP----DLPLEETEALRAEAAKNGIELVLLT 138 (250)
T ss_pred ---HHHHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 9999999999999999887 5889999999999999999985544
No 39
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=91.90 E-value=2.6 Score=33.70 Aligned_cols=98 Identities=17% Similarity=0.374 Sum_probs=68.8
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC-CCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG-FDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG-F~~ 117 (185)
.+.++.++++.+..++..+-|.+|-..+.++ +.+-++.+++.|+.++.=| .| ..++.++...+.| .+.
T Consensus 48 ~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~--l~~li~~~~~~g~~v~i~T-------Ng--~~~~~l~~l~~~g~~~~ 116 (191)
T TIGR02495 48 EVEFLLEFLRSRQGLIDGVVITGGEPTLQAG--LPDFLRKVRELGFEVKLDT-------NG--SNPRVLEELLEEGLVDY 116 (191)
T ss_pred CHHHHHHHHHHhcCCCCeEEEECCcccCcHh--HHHHHHHHHHCCCeEEEEe-------CC--CCHHHHHHHHhcCCCcE
Confidence 5668888888888889999999999888776 8999999999998655311 12 1234555566678 488
Q ss_pred EEecCCcc-c----C-----Ch-hHHHHHHHHHHHCCCeec
Q 029925 118 IELNVGSL-E----I-----PE-ETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 118 IEISdGti-~----i-----~~-~~r~~lI~~~~~~Gf~v~ 147 (185)
|-||-... + + .. +.-.+.|+.+++.|+.+.
T Consensus 117 v~isl~~~~~~~~~~~g~~~~~~~~~~~~i~~l~~~gi~~~ 157 (191)
T TIGR02495 117 VAMDVKAPPEKYPELYGLEKNGSNNILKSLEILLRSGIPFE 157 (191)
T ss_pred EEEeccCChHHHHHHHCCCCchHHHHHHHHHHHHHcCCCEE
Confidence 87754421 1 1 11 145688899999998764
No 40
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=91.75 E-value=0.15 Score=42.69 Aligned_cols=97 Identities=20% Similarity=0.221 Sum_probs=72.9
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccC-----------ChhHHHHHHHHHHhCCceecCccHHHHHHH--hCCchHHHHH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIR--NGPSAFKEYV 107 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~--qg~~~~~~yl 107 (185)
..++.+.+. | +|.+-+...++-.+ .-+.+.+-|+.++++|+.+.... |.+.. .+++.+.+++
T Consensus 78 ~~i~~a~~~-g--~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~l~~~~ 152 (265)
T cd03174 78 KGIERALEA-G--VDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL--EDAFGCKTDPEYVLEVA 152 (265)
T ss_pred hhHHHHHhC-C--cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeecCCCCCHHHHHHHH
Confidence 344444443 3 78888887666210 12348889999999999877641 11222 5556899999
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.+.++|.+.|-+.|-+-.+.+++-.++|+.+++.
T Consensus 153 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 153 KALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred HHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999986
No 41
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=91.71 E-value=0.54 Score=42.86 Aligned_cols=96 Identities=20% Similarity=0.219 Sum_probs=76.7
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~ 110 (185)
.++..+++ -+|.+-+...+|-++-+ +.+++-++.++++|..|+.+ +|.+-..+++.+.++++.+
T Consensus 80 di~~a~~~---g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~--~ed~~r~~~~~l~~~~~~~ 154 (378)
T PRK11858 80 DIDASIDC---GVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFS--AEDASRTDLDFLIEFAKAA 154 (378)
T ss_pred HHHHHHhC---CcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eccCCCCCHHHHHHHHHHH
Confidence 44444443 37888888877776433 44778899999999988876 4555555667889999999
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.+.|.+.|-+.|-.-.+.+++-.++|+.+++.
T Consensus 155 ~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 155 EEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred HhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999876
No 42
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=91.45 E-value=2.6 Score=36.97 Aligned_cols=93 Identities=20% Similarity=0.347 Sum_probs=56.0
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhC----CceecC-ccHHHHHHHhCCchHHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~ 112 (185)
.+.++.++++.+.++ +.-|.|.+|--.+.++ +.+.++.+++. .|.+.+ |+++. ++++.+++
T Consensus 50 s~eei~~~i~~~~~~gi~~I~~tGGEPll~~~--l~~li~~i~~~~~~~~i~itTNG~ll~-----------~~~~~L~~ 116 (331)
T PRK00164 50 SLEEIERLVRAFVALGVRKVRLTGGEPLLRKD--LEDIIAALAALPGIRDLALTTNGYLLA-----------RRAAALKD 116 (331)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcCccC--HHHHHHHHHhcCCCceEEEEcCchhHH-----------HHHHHHHH
Confidence 455777777665555 7788898899877765 78888888886 344455 54432 23344555
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHCCC
Q 029925 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~Gf 144 (185)
.|.+.|-||--+.+ -+.+...+.|+.+++.|+
T Consensus 117 agl~~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~ 158 (331)
T PRK00164 117 AGLDRVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGL 158 (331)
T ss_pred cCCCEEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCC
Confidence 56665555533221 233444555566666655
No 43
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=91.45 E-value=0.51 Score=39.73 Aligned_cols=46 Identities=15% Similarity=0.279 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-----cCChhHHHHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL-----EIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-----~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
.+++-++.++++||+.||+..+.. +++..+..++-+.+++.|++|.
T Consensus 14 ~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~v~ 64 (275)
T PRK09856 14 PIEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQTYQMPII 64 (275)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHHcCCeEE
Confidence 466667777777777777753311 2333445556666667777663
No 44
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=91.26 E-value=0.8 Score=39.41 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=72.8
Q ss_pred HHHHHHHhhc-ccccEEeeeCcccccC-----------ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 029925 42 VLEDIFESMG-QFVDGLKFSGGSHSLM-----------PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 42 ~~eDlLe~ag-~yID~lKfg~GTs~l~-----------p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~ 109 (185)
.++..++.-. ..+|.+.+...+|-+. .-+.+++-++.++++|..++.+. |.+-...++.+.++.+.
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~--~~~~~~~~~~~~~~~~~ 151 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSA--EDATRTDLDFLIEVVEA 151 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEee--ecCCCCCHHHHHHHHHH
Confidence 4444444322 2289998877655442 11447789999999999888652 12222344577888889
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.++|.+.|-+.|-+-.+.+++-.++++.+++.
T Consensus 152 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~ 184 (268)
T cd07940 152 AIEAGATTINIPDTVGYLTPEEFGELIKKLKEN 184 (268)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999986
No 45
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=90.91 E-value=2.4 Score=37.50 Aligned_cols=96 Identities=26% Similarity=0.406 Sum_probs=63.9
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCceec--C-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
....+.++++.+.+. +..|-|++|--.+.|. +.+.++.++++|+.+. + |+++. ++.++.+++.|
T Consensus 38 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~ii~~~~~~g~~~~l~TNG~ll~----------~e~~~~L~~~g 105 (358)
T TIGR02109 38 TTEEWTDVLTQAAELGVLQLHFSGGEPLARPD--LVELVAHARRLGLYTNLITSGVGLT----------EARLDALADAG 105 (358)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEeCcccccccc--HHHHHHHHHHcCCeEEEEeCCccCC----------HHHHHHHHhCC
Confidence 455667777665443 5668898899888775 8899999999998543 3 65431 34556677788
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHCCCee
Q 029925 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~Gf~v 146 (185)
++.|.||=...+ . +.+.-.+.|+.+++.|+.+
T Consensus 106 ~~~v~iSldg~~~e~~d~~rg~~g~f~~v~~~i~~l~~~g~~v 148 (358)
T TIGR02109 106 LDHVQLSFQGVDEALADRIAGYKNAFEQKLAMARAVKAAGLPL 148 (358)
T ss_pred CCEEEEeCcCCCHHHHHHhcCCccHHHHHHHHHHHHHhCCCce
Confidence 888888855442 1 1223355677778888765
No 46
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=90.89 E-value=0.62 Score=42.18 Aligned_cols=90 Identities=21% Similarity=0.210 Sum_probs=72.4
Q ss_pred cccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 51 GQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
..-+|.+-+...+|-++-+ +.+++-|+.++++|..|..+ +|.+-...++.+.++.+.+.+.|.+.|-
T Consensus 83 ~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~--~ed~~r~~~~~l~~~~~~~~~~Ga~~i~ 160 (365)
T TIGR02660 83 RCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG--GEDASRADPDFLVELAEVAAEAGADRFR 160 (365)
T ss_pred cCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe--ecCCCCCCHHHHHHHHHHHHHcCcCEEE
Confidence 3457888888877754322 22558899999999988876 4555555667888899999999999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHC
Q 029925 120 LNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.|-.--+.+++-.++|+.+++.
T Consensus 161 l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 161 FADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred EcccCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 47
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=90.62 E-value=4.3 Score=31.26 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=57.4
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCC-----ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-----VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--- 125 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-----V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--- 125 (185)
++.+-|+.|+..+.+.+.+.+.++.+++.. ..+...| .+...-++.++.+++.|++.|-||--+.
T Consensus 52 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t-------n~~~~~~~~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 52 VGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIET-------RPGTLTEELLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred eeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-------CcccCCHHHHHHHHHcCCCeEEEecccCCHH
Confidence 578888888888888655777777777764 2222211 1111235677778888888888776542
Q ss_pred -------cCChhHHHHHHHHHHHCC-Ceec
Q 029925 126 -------EIPEETLLRYVRLVKSAG-LKAK 147 (185)
Q Consensus 126 -------~i~~~~r~~lI~~~~~~G-f~v~ 147 (185)
.-+.+...+.|+.+++.| +.|.
T Consensus 125 ~~~~~~~~~~~~~~~~~i~~~~~~g~~~v~ 154 (216)
T smart00729 125 VLKAINRGHTVEDVLEAVEKLREAGPIKVS 154 (216)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHhCCcceE
Confidence 235577788888888888 5553
No 48
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=90.46 E-value=3.5 Score=36.26 Aligned_cols=94 Identities=21% Similarity=0.341 Sum_probs=54.1
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHh-CCc-e--ecC-ccHHHHHHHhCCchHHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDV-Y--VST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV-~--v~~-GtlfE~al~qg~~~~~~yl~~~k~ 112 (185)
.+.++.++++.+.++ |.-|.|.+|-..+.+. +.+.++.+++ .|+ . +.+ |.+++ ++++..++
T Consensus 44 s~eei~~~i~~~~~~gv~~V~ltGGEPll~~~--l~~li~~i~~~~gi~~v~itTNG~ll~-----------~~~~~L~~ 110 (334)
T TIGR02666 44 TFEEIERLVRAFVGLGVRKVRLTGGEPLLRKD--LVELVARLAALPGIEDIALTTNGLLLA-----------RHAKDLKE 110 (334)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECccccccCC--HHHHHHHHHhcCCCCeEEEEeCchhHH-----------HHHHHHHH
Confidence 555777776665433 7888898888877765 7788887766 455 3 334 54332 23344555
Q ss_pred cCCCEEEecCCccc-----------CChhHHHHHHHHHHHCCCe
Q 029925 113 VGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 113 lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~ 145 (185)
.|++.|-||=-+.+ .+.+.-.+-|+.+++.|+.
T Consensus 111 ~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~ 154 (334)
T TIGR02666 111 AGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLE 154 (334)
T ss_pred cCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 56665555543321 1234445555555565554
No 49
>PRK07094 biotin synthase; Provisional
Probab=90.36 E-value=4.3 Score=35.45 Aligned_cols=85 Identities=16% Similarity=0.215 Sum_probs=58.8
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHh-CCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---- 125 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---- 125 (185)
-+..+-|..|....++.+.+.+.++..++ .++.+.. |. .-++.++.+++.|++.|-++--+.
T Consensus 86 g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l~~Lk~aG~~~v~~glEs~~~~~ 154 (323)
T PRK07094 86 GYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEYKAWKEAGADRYLLRHETADKEL 154 (323)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHHHHHHHcCCCEEEeccccCCHHH
Confidence 35667777776555666778888888887 4665432 21 235677788888888876654443
Q ss_pred ------cCChhHHHHHHHHHHHCCCeecc
Q 029925 126 ------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 126 ------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+.+++.+.|+.+++.|+.|.+
T Consensus 155 ~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~ 183 (323)
T PRK07094 155 YAKLHPGMSFENRIACLKDLKELGYEVGS 183 (323)
T ss_pred HHHhCCCCCHHHHHHHHHHHHHcCCeecc
Confidence 46778888888888888887744
No 50
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=90.35 E-value=1.1 Score=39.29 Aligned_cols=108 Identities=12% Similarity=0.154 Sum_probs=70.8
Q ss_pred chhHHHHHHHh-hcccccEEeeeCccc-ccCChhHHHHHHHHH------------------HhCCceecCccHHHHHHHh
Q 029925 39 SHNVLEDIFES-MGQFVDGLKFSGGSH-SLMPKPFIEEVVKRA------------------HQHDVYVSTGDWAEHLIRN 98 (185)
Q Consensus 39 g~~~~eDlLe~-ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~------------------~~~gV~v~~GtlfE~al~q 98 (185)
.++.+.+++.. .-.-+|+|=+|+=.| .+.+-..+++--+.+ +++++++..=|++...++.
T Consensus 27 ~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~ 106 (263)
T CHL00200 27 DIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHY 106 (263)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHh
Confidence 33455554432 233499999997443 222222333222222 2245554433777777777
Q ss_pred CCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccc
Q 029925 99 GPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
| +++|++.|++.|++.|=|= ++|.++..++++.++++|+.+.+-+.-.
T Consensus 107 G---~e~F~~~~~~aGvdgviip----DLP~ee~~~~~~~~~~~gi~~I~lv~Pt 154 (263)
T CHL00200 107 G---INKFIKKISQAGVKGLIIP----DLPYEESDYLISVCNLYNIELILLIAPT 154 (263)
T ss_pred C---HHHHHHHHHHcCCeEEEec----CCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5 9999999999999999874 5788999999999999999985544433
No 51
>PRK09989 hypothetical protein; Provisional
Probab=90.27 E-value=0.62 Score=39.29 Aligned_cols=42 Identities=19% Similarity=0.368 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
.+.+-++.++++||+.||+.. ....+ ..++-+.+++.|++|.
T Consensus 16 ~l~~~l~~~~~~Gfd~VEl~~-~~~~~---~~~~~~~l~~~Gl~v~ 57 (258)
T PRK09989 16 PFIERFAAARKAGFDAVEFLF-PYDYS---TLQIQKQLEQNHLTLA 57 (258)
T ss_pred CHHHHHHHHHHcCCCEEEECC-cccCC---HHHHHHHHHHcCCcEE
Confidence 789999999999999999963 22333 3467777889999985
No 52
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=90.24 E-value=3.9 Score=36.24 Aligned_cols=93 Identities=16% Similarity=0.290 Sum_probs=55.1
Q ss_pred chhHHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhCC-c---eecC-ccHHHHHHHhCCchHHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-V---YVST-GDWAEHLIRNGPSAFKEYVEDCKQ 112 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V---~v~~-GtlfE~al~qg~~~~~~yl~~~k~ 112 (185)
...++..+++.+.+ -|..|.|.+|.-.+.+. +.+.++.+++++ + .+.+ |+++. +.++.+++
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~tGGEPllr~d--l~~li~~i~~~~~l~~i~itTNG~ll~-----------~~~~~L~~ 112 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRLTGGEPLVRRG--CDQLVARLGKLPGLEELSLTTNGSRLA-----------RFAAELAD 112 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECcCCCcccc--HHHHHHHHHhCCCCceEEEEeChhHHH-----------HHHHHHHH
Confidence 45566666664433 37889999999877665 778888888765 2 2334 54432 23344556
Q ss_pred cCCCEEEecCCccc----------CChhHHHHHHHHHHHCCC
Q 029925 113 VGFDTIELNVGSLE----------IPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 113 lGF~~IEISdGti~----------i~~~~r~~lI~~~~~~Gf 144 (185)
.|++.|-||-.+++ -+.+.-.+.|+.+++.|+
T Consensus 113 aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi 154 (329)
T PRK13361 113 AGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGF 154 (329)
T ss_pred cCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCC
Confidence 66666666655442 123344555666666665
No 53
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=90.06 E-value=4 Score=30.15 Aligned_cols=95 Identities=23% Similarity=0.413 Sum_probs=69.5
Q ss_pred chhHHHHHHHhhc-cc-ccEEeeeCcccccCChhHHHHHHHHHHhC---CceecC---ccHHHHHHHhCCchHHHHHHHH
Q 029925 39 SHNVLEDIFESMG-QF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQH---DVYVST---GDWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 39 g~~~~eDlLe~ag-~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~---gV~v~~---GtlfE~al~qg~~~~~~yl~~~ 110 (185)
.+..+.+.+.... +. +..+=++.|...+.++ ..+++..+++. ++.+.. |++.. +++++.+
T Consensus 29 ~~e~i~~~~~~~~~~~~~~~i~~~~gep~~~~~--~~~~~~~~~~~~~~~~~i~~~t~~~~~~----------~~~l~~l 96 (166)
T PF04055_consen 29 SPEEILEEIKELKQDKGVKEIFFGGGEPTLHPD--FIELLELLRKIKKRGIRISINTNGTLLD----------EELLDEL 96 (166)
T ss_dssp HHHHHHHHHHHHHHHTTHEEEEEESSTGGGSCH--HHHHHHHHHHCTCTTEEEEEEEESTTHC----------HHHHHHH
T ss_pred CHHHHHHHHHHHhHhcCCcEEEEeecCCCcchh--HHHHHHHHHHhhccccceeeeccccchh----------HHHHHHH
Confidence 4445555555552 32 8999999999999987 77777777775 776654 44432 6778889
Q ss_pred HHcCCCEEEecCCccc-----------CChhHHHHHHHHHHHCCCe
Q 029925 111 KQVGFDTIELNVGSLE-----------IPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 111 k~lGF~~IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~ 145 (185)
+++|++.|.+|--+.+ -+.++..+.++.+++.|+.
T Consensus 97 ~~~~~~~i~~~l~s~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~ 142 (166)
T PF04055_consen 97 KKLGVDRIRISLESLDEESVLRIINRGKSFERVLEALERLKEAGIP 142 (166)
T ss_dssp HHTTCSEEEEEEBSSSHHHHHHHHSSTSHHHHHHHHHHHHHHTTSE
T ss_pred HhcCccEEecccccCCHHHhhhhhcCCCCHHHHHHHHHHHHHcCCC
Confidence 9999999998755542 3456777899999999988
No 54
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=89.92 E-value=2.9 Score=35.71 Aligned_cols=101 Identities=16% Similarity=0.286 Sum_probs=63.8
Q ss_pred hHHHHHHHhh-cccccEEeeeCcc-cccCChhHHHH-----------------HHHHHHh-CCceecCccHHHHHHHhCC
Q 029925 41 NVLEDIFESM-GQFVDGLKFSGGS-HSLMPKPFIEE-----------------VVKRAHQ-HDVYVSTGDWAEHLIRNGP 100 (185)
Q Consensus 41 ~~~eDlLe~a-g~yID~lKfg~GT-s~l~p~~~L~e-----------------KI~l~~~-~gV~v~~GtlfE~al~qg~ 100 (185)
..+.+++... ..-+|++=+|.=. -.+++-+.++. -++..++ .++++..=+.+...+..|
T Consensus 14 ~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G- 92 (242)
T cd04724 14 ETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYG- 92 (242)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhC-
Confidence 3444433332 2248999999411 12444444443 3333443 245433214445555553
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+++|++.|++.|++.|=|-| +|.++..++++.++++|+++.+
T Consensus 93 --~~~fi~~~~~aG~~giiipD----l~~ee~~~~~~~~~~~g~~~i~ 134 (242)
T cd04724 93 --LERFLRDAKEAGVDGLIIPD----LPPEEAEEFREAAKEYGLDLIF 134 (242)
T ss_pred --HHHHHHHHHHCCCcEEEECC----CCHHHHHHHHHHHHHcCCcEEE
Confidence 89999999999999998864 5677888999999999998744
No 55
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=89.92 E-value=3 Score=36.98 Aligned_cols=94 Identities=19% Similarity=0.263 Sum_probs=56.0
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCcee--cC-ccHHHHHHHhCCchHHHHHHHHHHcCC
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~-GtlfE~al~qg~~~~~~yl~~~k~lGF 115 (185)
.+.+..+.++..|. =.|-|.+|=-.+.|. +.+.++.+++.|+.+ .+ |++++.. + +..+..|.
T Consensus 60 s~ee~~~~i~e~g~--~~V~i~GGEPLL~pd--l~eiv~~~~~~g~~v~l~TNG~ll~~~-------~----~~l~~~~~ 124 (318)
T TIGR03470 60 SVEECLRAVDECGA--PVVSIPGGEPLLHPE--IDEIVRGLVARKKFVYLCTNALLLEKK-------L----DKFEPSPY 124 (318)
T ss_pred CHHHHHHHHHHcCC--CEEEEeCcccccccc--HHHHHHHHHHcCCeEEEecCceehHHH-------H----HHHHhCCC
Confidence 33344555555553 357788888888876 899999999988644 45 7765422 1 22344566
Q ss_pred CEEEec-CCcccCC---------hhHHHHHHHHHHHCCCeec
Q 029925 116 DTIELN-VGSLEIP---------EETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 116 ~~IEIS-dGti~i~---------~~~r~~lI~~~~~~Gf~v~ 147 (185)
..|-|| ||.-+.- -+.-.+.|+.+++.|+.|.
T Consensus 125 ~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~v~ 166 (318)
T TIGR03470 125 LTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFRVT 166 (318)
T ss_pred cEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCcEE
Confidence 666666 4432111 1222456777777776653
No 56
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=89.85 E-value=1.1 Score=39.63 Aligned_cols=96 Identities=16% Similarity=0.243 Sum_probs=60.5
Q ss_pred EeeeCcccccCChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcc--------
Q 029925 57 LKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSL-------- 125 (185)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF-~~IEISdGti-------- 125 (185)
+=|+.||....|.+.|++.++.++++. +.++.+|=-+.. ++..-+.++.+++.|+ ..||+.-=|.
T Consensus 81 iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~trpd~l----~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i 156 (302)
T TIGR01212 81 AYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTRPDCV----PDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKKI 156 (302)
T ss_pred EEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEecCCcC----CHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHHH
Confidence 668999999999999999999888752 122222211111 1123355555666799 4677743333
Q ss_pred --cCChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 126 --EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
..+.++..+.|+.+++.|++|...+=.-++.
T Consensus 157 ~Rg~t~~~~~~ai~~l~~~gi~v~~~lI~GlPg 189 (302)
T TIGR01212 157 NRGHDFACYVDAVKRARKRGIKVCSHVILGLPG 189 (302)
T ss_pred cCcChHHHHHHHHHHHHHcCCEEEEeEEECCCC
Confidence 2355677888999999999886554444333
No 57
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=89.78 E-value=0.71 Score=38.59 Aligned_cols=43 Identities=21% Similarity=0.190 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.+++.++.++++||+.||+..-. ..+..++.+.+++.|+++..
T Consensus 15 ~l~e~~~~~~e~G~~~vEl~~~~----~~~~~~l~~~l~~~gl~v~~ 57 (254)
T TIGR03234 15 PFLERFAAAAQAGFTGVEYLFPY----DWDAEALKARLAAAGLEQVL 57 (254)
T ss_pred CHHHHHHHHHHcCCCEEEecCCc----cCCHHHHHHHHHHcCCeEEE
Confidence 78999999999999999996421 23466677788899999853
No 58
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=89.78 E-value=0.43 Score=39.76 Aligned_cols=100 Identities=25% Similarity=0.204 Sum_probs=71.1
Q ss_pred hHHHHHHH-hhcccccEEeeeCcccccCC-----------hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHH
Q 029925 41 NVLEDIFE-SMGQFVDGLKFSGGSHSLMP-----------KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (185)
Q Consensus 41 ~~~eDlLe-~ag~yID~lKfg~GTs~l~p-----------~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~ 108 (185)
..++..++ ....=+|.+-+...+|-++. -+.+++-++.++++|..++.+. |.+-...++.+.++.+
T Consensus 67 ~~i~~~~~~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~--~~~~~~~~~~~~~~~~ 144 (237)
T PF00682_consen 67 EDIERAVEAAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGC--EDASRTDPEELLELAE 144 (237)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEE--TTTGGSSHHHHHHHHH
T ss_pred HHHHHHHHhhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCc--cccccccHHHHHHHHH
Confidence 34444333 23456777777776665221 2458888999999999998763 1112334457888899
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.+.++|.+.|-|.|..-.+.+++-.++|+.++++
T Consensus 145 ~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~ 178 (237)
T PF00682_consen 145 ALAEAGADIIYLADTVGIMTPEDVAELVRALREA 178 (237)
T ss_dssp HHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHH
T ss_pred HHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999986
No 59
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.61 E-value=3.5 Score=33.52 Aligned_cols=97 Identities=18% Similarity=0.181 Sum_probs=57.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCcc-HHHHHHHhCCchHHHH-HHHHHHcCC
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD-WAEHLIRNGPSAFKEY-VEDCKQVGF 115 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt-lfE~al~qg~~~~~~y-l~~~k~lGF 115 (185)
.+.....+.+..++.||++|+|+ +...+.. ++.--++.+.| +..+.-++ ++ ++. .| ++.+.+.|.
T Consensus 10 ~~~~a~~~~~~l~~~v~~iev~~--~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~------d~~---~~~~~~~~~~Ga 77 (206)
T TIGR03128 10 DIEEALELAEKVADYVDIIEIGT--PLIKNEG-IEAVKEMKEAFPDRKVLADLKTM------DAG---EYEAEQAFAAGA 77 (206)
T ss_pred CHHHHHHHHHHcccCeeEEEeCC--HHHHHhC-HHHHHHHHHHCCCCEEEEEEeec------cch---HHHHHHHHHcCC
Confidence 56677888888899999999964 3333322 22222222332 33333332 22 211 23 556778888
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
++|=+.--+ +...-.++|+.+++.|+++.+++
T Consensus 78 d~i~vh~~~---~~~~~~~~i~~~~~~g~~~~~~~ 109 (206)
T TIGR03128 78 DIVTVLGVA---DDATIKGAVKAAKKHGKEVQVDL 109 (206)
T ss_pred CEEEEeccC---CHHHHHHHHHHHHHcCCEEEEEe
Confidence 888544322 33445678888888888887763
No 60
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=89.51 E-value=0.74 Score=42.81 Aligned_cols=89 Identities=11% Similarity=0.143 Sum_probs=63.0
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (185)
-|+-|=||+||..+.+.+.|++.++.++++ .+.. -.|+.+.-+|+. -++.++.+++.||+.|.|---|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~----~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vL 189 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAP----DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVR 189 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCC----CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHH
Confidence 488999999999999999999999999885 2211 122222222222 36788899999999988765554
Q ss_pred -----cCChhHHHHHHHHHHHCCCe
Q 029925 126 -----EIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.-+.++-.+.|+.+++.||.
T Consensus 190 k~lgR~~~~~~~~~~i~~l~~~g~~ 214 (449)
T PRK09058 190 RRAGRKDDREEVLARLEELVARDRA 214 (449)
T ss_pred HHhCCCCCHHHHHHHHHHHHhCCCC
Confidence 23455666778888888854
No 61
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=89.36 E-value=3 Score=36.91 Aligned_cols=94 Identities=17% Similarity=0.214 Sum_probs=63.3
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-c-cHHHHHHHh---CCchHHHHHHHHHHcCCCEEEe-----c-C
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G-DWAEHLIRN---GPSAFKEYVEDCKQVGFDTIEL-----N-V 122 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G-tlfE~al~q---g~~~~~~yl~~~k~lGF~~IEI-----S-d 122 (185)
+.-+=|..|.....+.+.+.+.++..++++..+.. . +..|+.... | -..++-++.+|+.|++.+-- . +
T Consensus 89 ~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g-~~~~e~l~~Lk~aG~~~~~~~g~E~~~~ 167 (340)
T TIGR03699 89 GTQILLQGGVNPDLGLDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEG-LSLREVLERLKEAGLDSIPGGGAEILSD 167 (340)
T ss_pred CcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCC-CCHHHHHHHHHHcCCCcCCCCcccccCH
Confidence 56666777766666777788888888887643332 2 556654322 3 12488899999999877631 1 1
Q ss_pred Ccc------cCChhHHHHHHHHHHHCCCeecc
Q 029925 123 GSL------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 123 Gti------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
-+. ..+.+++.+.|+.+++.|+++.+
T Consensus 168 ~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~ 199 (340)
T TIGR03699 168 RVRKIISPKKISSEEWLEVMETAHKLGLPTTA 199 (340)
T ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCCCccc
Confidence 111 24778889999999999998854
No 62
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=89.19 E-value=1.9 Score=37.93 Aligned_cols=110 Identities=16% Similarity=0.266 Sum_probs=71.8
Q ss_pred chhHHHHHHHhhcc-cccEEeeeCccc-ccCChhHHHHH-----------------HHHHH--hCCceecCccHHHHHHH
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFSGGSH-SLMPKPFIEEV-----------------VKRAH--QHDVYVSTGDWAEHLIR 97 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg~GTs-~l~p~~~L~eK-----------------I~l~~--~~gV~v~~GtlfE~al~ 97 (185)
.+..+.+++...-+ -+|+|=+|+=.| .+.+-.++++- ++-.+ ..++++..=|++...+.
T Consensus 22 ~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~ 101 (259)
T PF00290_consen 22 DLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQ 101 (259)
T ss_dssp SHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhc
Confidence 44566666665544 889999997543 22222333322 22222 34566666688888888
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
.| +++|++.|++.|++.+=| -+||.++...+.+.++++|+...+-+--...
T Consensus 102 ~G---~e~F~~~~~~aGvdGlIi----pDLP~ee~~~~~~~~~~~gl~~I~lv~p~t~ 152 (259)
T PF00290_consen 102 YG---IERFFKEAKEAGVDGLII----PDLPPEESEELREAAKKHGLDLIPLVAPTTP 152 (259)
T ss_dssp H----HHHHHHHHHHHTEEEEEE----TTSBGGGHHHHHHHHHHTT-EEEEEEETTS-
T ss_pred cc---hHHHHHHHHHcCCCEEEE----cCCChHHHHHHHHHHHHcCCeEEEEECCCCC
Confidence 86 999999999999999877 4688899999999999999998654444333
No 63
>PRK01060 endonuclease IV; Provisional
Probab=89.12 E-value=1.1 Score=37.97 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cc---cCChhHHHHHHHHHHHCCCe
Q 029925 102 AFKEYVEDCKQVGFDTIELNVG---SL---EIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti---~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+++.++.++++||+.||+.-+ +. .+++++..++-+.+++.|++
T Consensus 13 ~~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~ 62 (281)
T PRK01060 13 GLEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGIS 62 (281)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3777888899999999999653 21 45666666777788888987
No 64
>smart00642 Aamy Alpha-amylase domain.
Probab=89.01 E-value=1.3 Score=36.00 Aligned_cols=51 Identities=18% Similarity=0.157 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCEEEecCCccc-----------------C-----ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 106 YVEDCKQVGFDTIELNVGSLE-----------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~-----------------i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
-+++++++||++|.++-=+-. + +.++..++|+.++++|++|..++=.....
T Consensus 24 ~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~V~NH~~ 96 (166)
T smart00642 24 KLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVILDVVINHTS 96 (166)
T ss_pred HHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 355678899999988642211 1 23788999999999999998776555543
No 65
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=88.76 E-value=0.66 Score=39.13 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=35.5
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.+.+. .+++.++.+++.||+.||+.. ... .+..++-+.+++.|+++..
T Consensus 11 ~~~~~--~l~~~l~~~a~~Gf~~VEl~~-~~~---~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 11 LFGEY--DFLARFEKAAQCGFRGVEFMF-PYD---YDIEELKQVLASNKLEHTL 58 (258)
T ss_pred hccCC--CHHHHHHHHHHhCCCEEEEcC-CCC---CCHHHHHHHHHHcCCcEEE
Confidence 34454 689999999999999999954 222 2455666777899999853
No 66
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=88.67 E-value=2.1 Score=37.16 Aligned_cols=100 Identities=22% Similarity=0.317 Sum_probs=66.0
Q ss_pred hhHHHHHHH-hhcccccEEeeeCccc-ccCChh-----------------HHHHHHHHHHh--CCceecCc-cHHHHHHH
Q 029925 40 HNVLEDIFE-SMGQFVDGLKFSGGSH-SLMPKP-----------------FIEEVVKRAHQ--HDVYVSTG-DWAEHLIR 97 (185)
Q Consensus 40 ~~~~eDlLe-~ag~yID~lKfg~GTs-~l~p~~-----------------~L~eKI~l~~~--~gV~v~~G-tlfE~al~ 97 (185)
+..+.+++. ..-.-+|+|=+|.=.| .+.+-. .+-+-++-.++ .++++. - +...-.+.
T Consensus 23 ~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv-~m~Y~Npi~~ 101 (256)
T TIGR00262 23 LETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG-LLTYYNLIFR 101 (256)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE-EEEeccHHhh
Confidence 344445333 3344599999997221 111111 12233444443 366655 4 66666666
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
.| +++|++.|++.|++.|=|=| +|.++..++++.++++|+.+.
T Consensus 102 ~G---~e~f~~~~~~aGvdgviipD----lp~ee~~~~~~~~~~~gl~~i 144 (256)
T TIGR00262 102 KG---VEEFYAKCKEVGVDGVLVAD----LPLEESGDLVEAAKKHGVKPI 144 (256)
T ss_pred hh---HHHHHHHHHHcCCCEEEECC----CChHHHHHHHHHHHHCCCcEE
Confidence 64 89999999999999998874 577888999999999999864
No 67
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=88.58 E-value=1.3 Score=39.15 Aligned_cols=88 Identities=18% Similarity=0.053 Sum_probs=67.0
Q ss_pred cccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CccHHHHHHHhCCchHHHHHHHHHHcCC
Q 029925 53 FVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAFKEYVEDCKQVGF 115 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~~~yl~~~k~lGF 115 (185)
-+|.+-+...+|-.+.. +.+++-|+.++++|+.+. .|..++.. -.++.+.++.+.+.++|.
T Consensus 92 g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~ 169 (287)
T PRK05692 92 GADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGE--VPPEAVADVAERLFALGC 169 (287)
T ss_pred CCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCC--CCHHHHHHHHHHHHHcCC
Confidence 46777777666644222 137889999999999874 23333332 234578888899999999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 116 DTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.|-|.|-.--+.+.+-.++|+.++++
T Consensus 170 d~i~l~DT~G~~~P~~v~~lv~~l~~~ 196 (287)
T PRK05692 170 YEISLGDTIGVGTPGQVRAVLEAVLAE 196 (287)
T ss_pred cEEEeccccCccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999876
No 68
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=88.52 E-value=3.4 Score=37.00 Aligned_cols=96 Identities=26% Similarity=0.332 Sum_probs=63.3
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCcee--cC-ccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--ST-GDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~-GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
....+.++++.+.+. +-.|-|.+|--.+.|. +.+.++.+++.|+.+ .+ |+++- ++.++.+++.|
T Consensus 47 ~~e~~~~ii~~~~~~g~~~v~~~GGEPll~~~--~~~il~~~~~~g~~~~i~TNG~ll~----------~~~~~~L~~~g 114 (378)
T PRK05301 47 STEEWIRVLREARALGALQLHFSGGEPLLRKD--LEELVAHARELGLYTNLITSGVGLT----------EARLAALKDAG 114 (378)
T ss_pred CHHHHHHHHHHHHHcCCcEEEEECCccCCchh--HHHHHHHHHHcCCcEEEECCCccCC----------HHHHHHHHHcC
Confidence 455667777665443 4567788899888775 789999999998854 34 54321 23445567778
Q ss_pred CCEEEecCCccc---------C--ChhHHHHHHHHHHHCCCee
Q 029925 115 FDTIELNVGSLE---------I--PEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 115 F~~IEISdGti~---------i--~~~~r~~lI~~~~~~Gf~v 146 (185)
++.|.||=-..+ . +.+.-.+.|+.+++.|+.|
T Consensus 115 ~~~v~iSldg~~~e~~d~irg~~g~f~~~~~~i~~l~~~g~~v 157 (378)
T PRK05301 115 LDHIQLSFQDSDPELNDRLAGTKGAFAKKLAVARLVKAHGYPL 157 (378)
T ss_pred CCEEEEEecCCCHHHHHHHcCCCchHHHHHHHHHHHHHCCCce
Confidence 888888755431 1 2445556777788888776
No 69
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=88.31 E-value=1.7 Score=35.89 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=26.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEE 74 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~e 74 (185)
.......+++..++++|++|.|..-..-+..+.+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~vk~g~~l~~~~G~~~v~~ 49 (215)
T PRK13813 14 DRERALKIAEELDDYVDAIKVGWPLVLASGLGIIEE 49 (215)
T ss_pred CHHHHHHHHHhccccCCEEEEcHHHHHhhCHHHHHH
Confidence 667888899999999999999965433344443433
No 70
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=87.82 E-value=4.8 Score=38.75 Aligned_cols=110 Identities=23% Similarity=0.304 Sum_probs=74.6
Q ss_pred HHhhcccccEE--eeeCcccccCChhHHHHHHHHHHhCC-ceecC--c-cHHHHHHH---------------hCCch-HH
Q 029925 47 FESMGQFVDGL--KFSGGSHSLMPKPFIEEVVKRAHQHD-VYVST--G-DWAEHLIR---------------NGPSA-FK 104 (185)
Q Consensus 47 Le~ag~yID~l--Kfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~--G-tlfE~al~---------------qg~~~-~~ 104 (185)
|+..|+.+|=+ =|.+||+.-+|.+.++.-|+.++++= -+... + .-+|-+.. -.|+. -+
T Consensus 127 l~~~g~~~~kvE~i~~GGTft~l~~~y~~~fl~~~~~a~~~~~~~~~~~~~~~~~~~~ne~a~~~~vgitiEtRPD~i~~ 206 (522)
T TIGR01211 127 LEQIGHPVDKVELIIMGGTFPARDLDYQEWFIKRCLNAMNGFDQELKGNSTLEEAIRINETSKHRCVGLTIETRPDYCRE 206 (522)
T ss_pred HHHhCCCCceEEEEEECCCcccCCHHHHHHHHHHHHHHhccccccccccchHHHHHHhhhcccCCeEEEEEEEcCCcCCH
Confidence 44578887643 38999999999999999999998761 11111 1 00222211 12333 47
Q ss_pred HHHHHHHHcCCCEEEecCCcc----------cCChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti----------~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+.++.++++|++.||+.-=|. --+.++-.+.++.+++.||+|...+=.-.+.
T Consensus 207 e~L~~L~~~G~~rVslGVQS~~d~VL~~inRght~~~v~~Ai~~lr~~G~~v~~~LM~GLPg 268 (522)
T TIGR01211 207 EHIDRMLKLGATRVELGVQTIYNDILERTKRGHTVRDVVEATRLLRDAGLKVVYHIMPGLPG 268 (522)
T ss_pred HHHHHHHHcCCCEEEEECccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEEEEeecCCCC
Confidence 899999999999999866555 2445666788999999999985554444444
No 71
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=87.81 E-value=6.9 Score=33.85 Aligned_cols=96 Identities=14% Similarity=0.184 Sum_probs=68.2
Q ss_pred chhHHHHHHHhhcccccEEee------------eCcccccCChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchH
Q 029925 39 SHNVLEDIFESMGQFVDGLKF------------SGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAF 103 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKf------------g~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~ 103 (185)
.+..+..+.+...+|.|++=+ |.|++.+.+.+.+.+-++..++.+++|+- -++ .....
T Consensus 78 ~~ee~~~~a~~v~~~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~-------~~~~~ 150 (231)
T TIGR00736 78 DLEEAYDVLLTIAEHADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNC-------IPLDE 150 (231)
T ss_pred CHHHHHHHHHHHhcCCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCC-------CcchH
Confidence 455666666666667776655 67788899999999999999998887764 122 11134
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.+.|.+.|-|..+.-.-+..+ .++|+++++.
T Consensus 151 ~~~a~~l~~aGad~i~Vd~~~~g~~~a~-~~~I~~i~~~ 188 (231)
T TIGR00736 151 LIDALNLVDDGFDGIHVDAMYPGKPYAD-MDLLKILSEE 188 (231)
T ss_pred HHHHHHHHHcCCCEEEEeeCCCCCchhh-HHHHHHHHHh
Confidence 5777789999999999975443222234 4889998886
No 72
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=87.57 E-value=1.4 Score=36.67 Aligned_cols=45 Identities=22% Similarity=0.392 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+++.++.|+++||+.||++. +....+.++..++.+.+++.|+++
T Consensus 16 ~l~~~l~~~~~~G~~gvEi~~~~~~~~~~~~~~~l~~~l~~~gl~i 61 (274)
T COG1082 16 PLEEILRKAAELGFDGVELSPGDLFPADYKELAELKELLADYGLEI 61 (274)
T ss_pred CHHHHHHHHHHhCCCeEecCCcccCCchhhhHHHHHHHHHHcCcEE
Confidence 344444444444444444444 222222222344444444444444
No 73
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.54 E-value=4.1 Score=32.80 Aligned_cols=96 Identities=16% Similarity=0.101 Sum_probs=62.3
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC--CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCC
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF 115 (185)
.+....++++...+.||.+|+|+- ..++.. -+-|+..+++ ++++... ... + --..+++.+.+.|.
T Consensus 11 ~~~~~~~~~~~l~~~i~~ieig~~--~~~~~g--~~~i~~i~~~~~~~~i~~~~~v~------~--~~~~~~~~~~~aGa 78 (202)
T cd04726 11 DLEEALELAKKVPDGVDIIEAGTP--LIKSEG--MEAVRALREAFPDKIIVADLKTA------D--AGALEAEMAFKAGA 78 (202)
T ss_pred CHHHHHHHHHHhhhcCCEEEcCCH--HHHHhC--HHHHHHHHHHCCCCEEEEEEEec------c--ccHHHHHHHHhcCC
Confidence 677889999999999999999642 222221 2344445543 6665443 322 1 11233577889999
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCeeccc
Q 029925 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
+.|=+..-+ +.+.-.++++.+++.|.++..+
T Consensus 79 d~i~~h~~~---~~~~~~~~i~~~~~~g~~~~v~ 109 (202)
T cd04726 79 DIVTVLGAA---PLSTIKKAVKAAKKYGKEVQVD 109 (202)
T ss_pred CEEEEEeeC---CHHHHHHHHHHHHHcCCeEEEE
Confidence 998887654 2344567888889988887543
No 74
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=87.48 E-value=1.8 Score=29.25 Aligned_cols=46 Identities=20% Similarity=0.293 Sum_probs=34.9
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 100 PSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
....++|++.|++.|+++|=|+|=..--.. .++.+.+++.|++|.|
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~~~~~~---~~~~~~~~~~gi~~i~ 59 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHGNLFGA---VEFYKAAKKAGIKPII 59 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCCcccCH---HHHHHHHHHcCCeEEE
Confidence 347899999999999999999997622222 3445566678999987
No 75
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=87.44 E-value=3.4 Score=37.02 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=80.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhccccc-EEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVD-GLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP- 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID-~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~- 100 (185)
|.-+.-|-|..-.+..++++++..-.++. ...+ |.-..|..+-.++++.++++|| .++.| ++=+..+.. |+
T Consensus 54 ~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~L~~lgR~ 130 (350)
T PRK08446 54 SVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEI---TTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDKLKFLGRI 130 (350)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCceE---EEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 66677776643378889999998877621 1222 2334566667899999999999 77778 676555522 31
Q ss_pred ---chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 101 ---SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+-++.+++.||+.| -+-=|.-.-+.+++.+-++.+.+.+..
T Consensus 131 ~~~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~~l~~~ 180 (350)
T PRK08446 131 HSQKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAKELPIN 180 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 235556778888999854 555565566778888999999988755
No 76
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=87.33 E-value=6.8 Score=35.58 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred ceeEecCCCCCC-cchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCc
Q 029925 26 VTEMRSPHYTLS-SSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPS 101 (185)
Q Consensus 26 lTmV~DkG~s~~-~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~ 101 (185)
.|++-+||..+. .-.++|.+.+...-.=-|++=+++---.=+|.++..+-++++++.|++|.. |-.+..++.++|.
T Consensus 101 ~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~ 180 (310)
T COG1105 101 ETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPW 180 (310)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCc
Confidence 899999998765 244555555556566679999998777788999999999999999998875 5577777777664
Q ss_pred h
Q 029925 102 A 102 (185)
Q Consensus 102 ~ 102 (185)
-
T Consensus 181 l 181 (310)
T COG1105 181 L 181 (310)
T ss_pred E
Confidence 3
No 77
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=86.94 E-value=2.2 Score=37.68 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=53.7
Q ss_pred chhHHHHHHHhhcccccEEee---eCcccc----cCChhHHHHHHHHHHhCCceecC-cc-HHHHHHHhCCchHHHHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKF---SGGSHS----LMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKf---g~GTs~----l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al~qg~~~~~~yl~~ 109 (185)
.+..++..++..+.|---.|+ ..-|-. +++.+.|++..++||+|||+++. |. |+|.+...+ ..+.++.
T Consensus 107 ~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDGARl~~a~~~~~-~~~~e~~-- 183 (290)
T PF01212_consen 107 TPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDGARLANAAAALG-VSLAEIA-- 183 (290)
T ss_dssp -HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEETTHHHHHCHHH-HHHHHHH--
T ss_pred CHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEehhhHHHhhhccc-ccHHHHh--
Confidence 788999999998864444443 332222 78888899999999999999999 74 999885554 2344444
Q ss_pred HHHcCCCEEEecC
Q 029925 110 CKQVGFDTIELNV 122 (185)
Q Consensus 110 ~k~lGF~~IEISd 122 (185)
-+||.+=||-
T Consensus 184 ---~~~D~v~~~~ 193 (290)
T PF01212_consen 184 ---AGADSVSFGG 193 (290)
T ss_dssp ---TTSSEEEEET
T ss_pred ---hhCCEEEEEE
Confidence 7899999884
No 78
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=86.84 E-value=2.3 Score=38.62 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=68.6
Q ss_pred ccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
+|.+-+-..+|-++.+ +.+.+-|+.++++|..|..+ +|.+....++.+.++++.+.++|.+.|-+.|
T Consensus 85 ~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~--~eda~r~~~~~l~~~~~~~~~~g~~~i~l~D 162 (363)
T TIGR02090 85 VDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFS--AEDATRTDIDFLIKVFKRAEEAGADRINIAD 162 (363)
T ss_pred cCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEE--EeecCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 7777777776655321 34668889999999988754 2444445556788888889999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 029925 123 GSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (185)
-.-.+.+++-.++|+.+++.
T Consensus 163 T~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 163 TVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred CCCccCHHHHHHHHHHHhcc
Confidence 99999999999999999876
No 79
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=86.84 E-value=2.1 Score=38.03 Aligned_cols=78 Identities=10% Similarity=0.123 Sum_probs=54.2
Q ss_pred hhHHHHHHHHHHhCCceec--CccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHH
Q 029925 69 KPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRL 138 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~ 138 (185)
...+...|.-+|+.|++|. .|||-...+.+... -++.|.+.++.+||+.|.|.==.-... .+.+.++|+.
T Consensus 53 ~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~ 132 (294)
T cd06543 53 GGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALAL 132 (294)
T ss_pred chhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCCCeEEEeccCCccccchhHHHHHHHHHH
Confidence 4568889999999999665 48776554443322 256788899999999999843222222 2678889999
Q ss_pred HHHC--CCee
Q 029925 139 VKSA--GLKA 146 (185)
Q Consensus 139 ~~~~--Gf~v 146 (185)
++++ ++++
T Consensus 133 Lq~~~p~l~v 142 (294)
T cd06543 133 LQKEYPDLKI 142 (294)
T ss_pred HHHHCCCcEE
Confidence 8887 4444
No 80
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=86.71 E-value=2.8 Score=36.45 Aligned_cols=89 Identities=13% Similarity=0.208 Sum_probs=53.7
Q ss_pred HHHhhcccccEEeeeCccc----ccCChhHHHHHHHHHHhCCceecC--ccH---------HHHHHHhCCc----hHHHH
Q 029925 46 IFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST--GDW---------AEHLIRNGPS----AFKEY 106 (185)
Q Consensus 46 lLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~--Gtl---------fE~al~qg~~----~~~~y 106 (185)
.++..++.++.|=.-|-.. .+.+. ...+.+..+|++||++.+ |+| +..++. ++. -++..
T Consensus 18 ~~~~~~~~lt~v~p~w~~~~~~g~~~~~-~~~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~-~~~~r~~fi~~i 95 (313)
T cd02874 18 SLRANAPYLTYIAPFWYGVDADGTLTGL-PDERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLS-NPEARQRLINNI 95 (313)
T ss_pred HHHHhcCCCCEEEEEEEEEcCCCCCCCC-CCHHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhc-CHHHHHHHHHHH
Confidence 4445556666654333210 12222 246889999999999987 544 344432 222 46788
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 029925 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (185)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (185)
++.+++.|||.|+|.=-. ++.+++..++..
T Consensus 96 v~~l~~~~~DGidiDwE~--~~~~d~~~~~~f 125 (313)
T cd02874 96 LALAKKYGYDGVNIDFEN--VPPEDREAYTQF 125 (313)
T ss_pred HHHHHHhCCCcEEEeccc--CCHHHHHHHHHH
Confidence 888999999999996433 344555544433
No 81
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=86.67 E-value=5.9 Score=33.02 Aligned_cols=91 Identities=19% Similarity=0.274 Sum_probs=61.9
Q ss_pred HHHHHhhcccccEEeeeCcccc----cCChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 44 EDIFESMGQFVDGLKFSGGSHS----LMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 44 eDlLe~ag~yID~lKfg~GTs~----l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
-+.|..+| ||.+=+|++.+. +++. ..+.++.+++.+ +++.. +.++ . .+.++.+++.|++.
T Consensus 25 ~~~L~~~G--V~~IEvg~~~~~~~~p~~~~--~~~~i~~l~~~~~~~~~~~-------l~~~--~-~~~i~~a~~~g~~~ 90 (265)
T cd03174 25 AEALDEAG--VDSIEVGSGASPKAVPQMED--DWEVLRAIRKLVPNVKLQA-------LVRN--R-EKGIERALEAGVDE 90 (265)
T ss_pred HHHHHHcC--CCEEEeccCcCccccccCCC--HHHHHHHHHhccCCcEEEE-------EccC--c-hhhHHHHHhCCcCE
Confidence 34444556 999999999886 4433 455666666655 54421 1122 1 66788889999999
Q ss_pred EEecCCcccC------------ChhHHHHHHHHHHHCCCeecc
Q 029925 118 IELNVGSLEI------------PEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 118 IEISdGti~i------------~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
|-|+....+. ..+.-.+.|+.+++.|+.|..
T Consensus 91 i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 133 (265)
T cd03174 91 VRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEG 133 (265)
T ss_pred EEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 9999876631 345566889999999998744
No 82
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=86.27 E-value=2.2 Score=40.89 Aligned_cols=119 Identities=13% Similarity=0.061 Sum_probs=81.7
Q ss_pred CCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChh-----------HHHHHHHHHHhCCceecC
Q 029925 20 KPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVST 88 (185)
Q Consensus 20 KPR~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~ 88 (185)
+++-.++++.+.+++... --..++.+++ .-+|.+-+...||-++-+. .+++-++.++++|..|..
T Consensus 69 ~~~i~~~~~~~~~~i~~~-~d~~~e~~~~---~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~ 144 (524)
T PRK12344 69 HAKLAAFGSTRRAGVSAE-EDPNLQALLD---AGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIF 144 (524)
T ss_pred CcEEEEEeeccccCCCcc-cHHHHHHHHh---CCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 345555555555555221 1123333333 3467788887777554332 355888999999999887
Q ss_pred cc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 89 GD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 89 Gt-lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+. ++.-+....++.+-++.+.+.+.|.+.|-|.|-.--+.+.+-.++|+.++++
T Consensus 145 ~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~ 199 (524)
T PRK12344 145 DAEHFFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAA 199 (524)
T ss_pred ccccccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHh
Confidence 63 3333334445567778888899999999999999999999999999999886
No 83
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=85.95 E-value=8.3 Score=33.83 Aligned_cols=109 Identities=13% Similarity=0.192 Sum_probs=68.0
Q ss_pred chhHHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhCCc--eecCccHHHHHHH---hCCchHHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTGDWAEHLIR---NGPSAFKEYVEDCKQ 112 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~GtlfE~al~---qg~~~~~~yl~~~k~ 112 (185)
.+.++.+.++.+-+ =++-+-|-.|.....+.+.+.+-++..++.+. .++.=+-.|+... .| -..++.++.+|+
T Consensus 37 s~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g-~~~~e~l~~Lke 115 (309)
T TIGR00423 37 SLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEG-LSIEEVLKRLKK 115 (309)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcC-CCHHHHHHHHHH
Confidence 34444444442211 24556666666655667778888998888753 3332255665432 22 135888999999
Q ss_pred cCCCEE-EecCCc--------c---cCChhHHHHHHHHHHHCCCeecc
Q 029925 113 VGFDTI-ELNVGS--------L---EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 113 lGF~~I-EISdGt--------i---~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.|++.+ .++.-+ + .++.+++.+.|+.+++.|+++..
T Consensus 116 AGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s 163 (309)
T TIGR00423 116 AGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTA 163 (309)
T ss_pred cCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 999877 232111 1 35778889999999999998843
No 84
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=85.89 E-value=4.6 Score=37.54 Aligned_cols=120 Identities=13% Similarity=0.110 Sum_probs=82.7
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (185)
+..+.=|-+..-.+..++++++..-.++++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. |
T Consensus 106 ~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~~ 185 (453)
T PRK13347 106 QLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRIQ 185 (453)
T ss_pred EEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445555444226789999999888776542211112234566666899999999999 77778 676655532 1
Q ss_pred -CchHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 100 -PSAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.+.+-++.+++.||+. +.+.-|.=.-+.++..+-++.+.+.+..-
T Consensus 186 ~~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~p~~ 235 (453)
T PRK13347 186 PEEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKVIALSPDR 235 (453)
T ss_pred CHHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 124666788889999984 55666777778888889999999988654
No 85
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=85.87 E-value=1.8 Score=37.69 Aligned_cols=97 Identities=13% Similarity=0.132 Sum_probs=69.8
Q ss_pred hHHHHHHHhhcccccEEeeeCccccc-----------CChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSL-----------MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l-----------~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~ 109 (185)
..++..++. =+|.+-+...+|-. ..-+.+++-|+.++++|+.|+.+- |.+..-.++.+.++++.
T Consensus 75 ~di~~a~~~---g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~--eda~r~~~~~l~~~~~~ 149 (262)
T cd07948 75 DDARIAVET---GVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS--EDSFRSDLVDLLRVYRA 149 (262)
T ss_pred HHHHHHHHc---CcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE--EeeCCCCHHHHHHHHHH
Confidence 345555554 45666665544421 112335666799999999887642 23333344578889999
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+.++|.+.|-+.|-.--+.+++-.++++.+++.
T Consensus 150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999886
No 86
>PRK05660 HemN family oxidoreductase; Provisional
Probab=85.25 E-value=5.9 Score=35.93 Aligned_cols=119 Identities=12% Similarity=0.087 Sum_probs=83.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P- 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~- 100 (185)
|.-+.=|=|..-....++++++....+.++.+-.==|.-.-|..+-+++++.++++|| .++.| ++-+..+.. | .
T Consensus 61 ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~~ 140 (378)
T PRK05660 61 SIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRIH 140 (378)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCCC
Confidence 5556555444335788999999988876543211112234567778899999999999 77778 666555532 1 1
Q ss_pred --chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 101 --SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 101 --~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+-++.+++.||+ .+-+.-|.-.-+.+++.+-++.+.+.|..
T Consensus 141 ~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~~~l~~~~~l~p~ 189 (378)
T PRK05660 141 GPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEALDDLRQAIALNPP 189 (378)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhcCCC
Confidence 2355567788999997 47778888888899999999999998744
No 87
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=85.02 E-value=0.57 Score=36.68 Aligned_cols=40 Identities=28% Similarity=0.404 Sum_probs=33.0
Q ss_pred HHHHHHcCCCEEEecCCcccCCh---hHHHHHHHHHHHCCCee
Q 029925 107 VEDCKQVGFDTIELNVGSLEIPE---ETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~---~~r~~lI~~~~~~Gf~v 146 (185)
|+.++++||+.||++-....... ++..++.+.+++.|+++
T Consensus 1 l~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i 43 (213)
T PF01261_consen 1 LEAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKI 43 (213)
T ss_dssp HHHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEE
T ss_pred ChHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHHcCCeE
Confidence 57899999999999877665554 57778999999999996
No 88
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=84.81 E-value=6.6 Score=35.96 Aligned_cols=119 Identities=18% Similarity=0.097 Sum_probs=80.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (185)
|.-++-|-+....+..++.+++..-.+++..+-.-=|.-.-|..+=.++++.++++|| .++.| ++-+..+.. |
T Consensus 69 ~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~~ 148 (400)
T PRK07379 69 TVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSLGVQAFQDELLALCGRSH 148 (400)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCCC
Confidence 4455555433227789999999988876543222223335566667899999999999 78888 677776643 1
Q ss_pred -CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 100 -PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+.+-++.+++.||+.| -+--|.=.-+.+++.+-++.+.+.+..
T Consensus 149 ~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~ 197 (400)
T PRK07379 149 RVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDWQASLEAAIALNPT 197 (400)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHcCCCC
Confidence 1345667778899999854 445555555677777788888877654
No 89
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=84.77 E-value=2.1 Score=39.21 Aligned_cols=97 Identities=15% Similarity=0.057 Sum_probs=69.7
Q ss_pred hHHHHHHHhhcccccEEeeeCccccc--------CChhH---HHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSL--------MPKPF---IEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l--------~p~~~---L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (185)
..++..+++- +|.+-+...+|-. .+++. +++-|++++++|+.|. .|..++.. -.++.+
T Consensus 125 ~die~A~~~g---~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r--~~~~~l 199 (347)
T PLN02746 125 KGFEAAIAAG---AKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGP--VPPSKV 199 (347)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCC--CCHHHH
Confidence 3555555553 4556666544422 23333 4489999999999883 34322222 345578
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.+.|.+.|-|.|-.--+.+.+-.++++.+++.
T Consensus 200 ~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 200 AYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred HHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999999999876
No 90
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=84.61 E-value=2.8 Score=36.60 Aligned_cols=97 Identities=19% Similarity=0.109 Sum_probs=70.1
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceec------CccHHHHHHHhCCchH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVS------TGDWAEHLIRNGPSAF 103 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~------~GtlfE~al~qg~~~~ 103 (185)
+.++..+++- +|.+-+...+|-.+.. +.+.+.++.++++|..+. .|..++--. .++.+
T Consensus 77 ~dv~~A~~~g---~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~--~~~~~ 151 (274)
T cd07938 77 RGAERALAAG---VDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEV--PPERV 151 (274)
T ss_pred HHHHHHHHcC---cCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCC--CHHHH
Confidence 3455555543 6777777666643211 446777999999999873 232222111 23467
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.++|.+.|-+.|-.-.+.+.+-.++|+.++++
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~ 190 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHH
Confidence 788888999999999999999999999999999999886
No 91
>PRK09061 D-glutamate deacylase; Validated
Probab=84.59 E-value=7.1 Score=36.96 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=67.9
Q ss_pred HHHHHH---hhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-c---cHHH-HHHHhCCchHHHHHHHHHHcC
Q 029925 43 LEDIFE---SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G---DWAE-HLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 43 ~eDlLe---~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G---tlfE-~al~qg~~~~~~yl~~~k~lG 114 (185)
++++++ .+| ++.+|.+-.-..-.+.+.|.+-.+.+++||..+.. - ++.. ..... .+++.++.+++.|
T Consensus 171 m~~ll~~al~~G--a~gis~~~~y~p~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~~~~~~e~~---av~~~i~lA~~~G 245 (509)
T PRK09061 171 ILELLEQGLDEG--ALGIGIGAGYAPGTGHKEYLELARLAARAGVPTYTHVRYLSNVDPRSSVD---AYQELIAAAAETG 245 (509)
T ss_pred HHHHHHHHHHCC--CCEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEEEecCcccCCchhHHH---HHHHHHHHHHHhC
Confidence 455555 234 58888753222234777899999999999998865 1 2311 11111 5788899999999
Q ss_pred CCEEEecCCcc--cCChhHHHHHHHHHHHCCCeeccccc
Q 029925 115 FDTIELNVGSL--EIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 115 F~~IEISdGti--~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
+. +-||--+. ..+.++-+++|+++++.|..|..|+-
T Consensus 246 ~r-v~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~ 283 (509)
T PRK09061 246 AH-MHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAY 283 (509)
T ss_pred CC-EEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEec
Confidence 75 44542111 12446668999999999999987774
No 92
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=84.45 E-value=1.6 Score=36.51 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=42.7
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~ 88 (185)
...++.++++..++|||++|+|+--..-+..+.+++-++.+++.+.++.-
T Consensus 11 ~~~~a~~i~~~~~~~v~~iKvG~~l~~~~G~~~l~~~i~~l~~~~~~I~~ 60 (226)
T PF00215_consen 11 DLEEALRIADELGDYVDIIKVGTPLFLAYGLEALPEIIEELKERGKPIFL 60 (226)
T ss_dssp SHHHHHHHHHHHGGGSSEEEEEHHHHHHHCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHhcCcceEEEEChHHHhcCChhhHHHHHHHHHHhcCCEee
Confidence 56788899999999999999998776666766899999999999976664
No 93
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=84.32 E-value=2.3 Score=37.44 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=69.6
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCCh--------h---HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK--------P---FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVE 108 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~--------~---~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~ 108 (185)
.++..+++- +|.+.+...+|-.+.+ + .+++-|+.++++|..|..+ +|.- .+.-.++.+.++.+
T Consensus 79 ~~~~A~~~g---~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~-~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAG---AKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSN-GMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCC---CCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCC-CCcCCHHHHHHHHH
Confidence 344444443 3556666655543332 2 2566699999999988775 4321 11335568889999
Q ss_pred HHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 109 DCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 109 ~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.+.++|.+.|-|.|-.--+.+.+-.++++.+++.
T Consensus 155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~ 188 (280)
T cd07945 155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKR 188 (280)
T ss_pred HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999875
No 94
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.20 E-value=5.5 Score=35.35 Aligned_cols=93 Identities=13% Similarity=0.140 Sum_probs=68.1
Q ss_pred HHHHHHhhcccccEEeeeCcccccCChh---HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH--HcCCC
Q 029925 43 LEDIFESMGQFVDGLKFSGGSHSLMPKP---FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK--QVGFD 116 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs~l~p~~---~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k--~lGF~ 116 (185)
.+.+++..++++.++|.|+.-..-+-.+ .|++.|+.+++.|++|..- =+..+- +-+..|.+.+- ++|+|
T Consensus 43 ~~~ivd~~~~~v~~vK~gla~f~~~G~~G~~~l~~~i~~l~~~g~~VilD~K~~DI~-----nTv~~ya~a~~~~~~g~D 117 (278)
T PRK00125 43 CRIIVDATADLVAAFKPQIAYFEAHGAEGLAQLERTIAYLREAGVLVIADAKRGDIG-----STAEAYAKAAFESPLEAD 117 (278)
T ss_pred HHHHHHhcCCcccEEeccHHHHHhcCchhhhHHHHHHHHHHHCCCcEEEEeecCChH-----HHHHHHHHHHhcCccCCc
Confidence 3889999999999999999776666444 6889999999999988764 354443 13455666565 79999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCC
Q 029925 117 TIELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
+|-|+- -+..+....+++.+++.|
T Consensus 118 avTVhp---~~G~d~l~~~~~~~~~~~ 141 (278)
T PRK00125 118 AVTVSP---YMGFDSLEPYLEYAEEHG 141 (278)
T ss_pred EEEECC---cCCHHHHHHHHHHHHhcC
Confidence 999984 455566666666665443
No 95
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=84.16 E-value=11 Score=34.27 Aligned_cols=44 Identities=18% Similarity=0.321 Sum_probs=30.7
Q ss_pred chhHHHHHHHhh-cccccEEeeeCcccccCChhHHHHHHHHHHhC-Cc
Q 029925 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DV 84 (185)
Q Consensus 39 g~~~~eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV 84 (185)
.+.++.++++.+ ..-|..|.|.+|--.+.+. |.+.++.+++. |+
T Consensus 91 s~eei~~~i~~~~~~Gv~~I~~tGGEPllr~d--l~eli~~l~~~~gi 136 (373)
T PLN02951 91 SQDEIVRLAGLFVAAGVDKIRLTGGEPTLRKD--IEDICLQLSSLKGL 136 (373)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEECCCCcchhh--HHHHHHHHHhcCCC
Confidence 455666666543 2346778899888777765 88888888886 65
No 96
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=84.00 E-value=8.4 Score=29.44 Aligned_cols=107 Identities=13% Similarity=0.076 Sum_probs=59.9
Q ss_pred HHHHHHHhhccc-ccEEeeeCcccccCChhHH--HHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 029925 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 42 ~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (185)
...+.++.+.+. +|++-++.-.......... +....+.+..++++......-... +.+....+.+++.|+|.|
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~g~d~v 88 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAA----AAVDIAAAAARAAGADGV 88 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCch----hhhhHHHHHHHHcCCCEE
Confidence 334444444343 8888888644333322112 124455666777666542211000 011122467999999999
Q ss_pred EecCCcccCChhHHHHHHHHHHHC--CCeeccccccc
Q 029925 119 ELNVGSLEIPEETLLRYVRLVKSA--GLKAKPKFAVM 153 (185)
Q Consensus 119 EISdGti~i~~~~r~~lI~~~~~~--Gf~v~~E~G~k 153 (185)
||..+....+ +.-.++++.+++. ++.+...+...
T Consensus 89 ~l~~~~~~~~-~~~~~~~~~i~~~~~~~~v~~~~~~~ 124 (200)
T cd04722 89 EIHGAVGYLA-REDLELIRELREAVPDVKVVVKLSPT 124 (200)
T ss_pred EEeccCCcHH-HHHHHHHHHHHHhcCCceEEEEECCC
Confidence 9999887553 3334677777776 78776666543
No 97
>PRK05926 hypothetical protein; Provisional
Probab=83.86 E-value=15 Score=33.68 Aligned_cols=88 Identities=19% Similarity=0.288 Sum_probs=57.9
Q ss_pred CcccccCChhHHHHHHHHHHhC--CceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCEE-----EecCCcc------
Q 029925 61 GGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTI-----ELNVGSL------ 125 (185)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg--~~~~~~yl~~~k~lGF~~I-----EISdGti------ 125 (185)
.|-..-.+-+.+.+.++..++. +|.++.=+-.|++.... .-..++.++..|+.|++.+ |+.+-++
T Consensus 122 ~G~~p~~~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l~~LkeAGl~~~~g~GaEi~~e~~r~~~~p 201 (370)
T PRK05926 122 AGCFPSCNLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVLQTLKIAGLDSIPGGGAEILVDEIRETLAP 201 (370)
T ss_pred eCcCCCCCHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHHHHHHHcCcCccCCCCchhcCHHHHHhhCC
Confidence 3555445566778888888876 67655434456665432 1246888899999998654 3333332
Q ss_pred -cCChhHHHHHHHHHHHCCCeecc
Q 029925 126 -EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 126 -~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+.++|++.++.+++.|+++..
T Consensus 202 ~~~t~~e~l~~i~~a~~~Gi~~~s 225 (370)
T PRK05926 202 GRLSSQGFLEIHKTAHSLGIPSNA 225 (370)
T ss_pred CCCCHHHHHHHHHHHHHcCCcccC
Confidence 34668899999999999998833
No 98
>PRK08323 phenylhydantoinase; Validated
Probab=83.81 E-value=22 Score=32.29 Aligned_cols=95 Identities=11% Similarity=0.113 Sum_probs=62.5
Q ss_pred ccccEEeeeCc--ccccCChhHHHHHHHHHHhCCceecC--cc--HHHHH----HHhCC----------------chHHH
Q 029925 52 QFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHL----IRNGP----------------SAFKE 105 (185)
Q Consensus 52 ~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~a----l~qg~----------------~~~~~ 105 (185)
..++.+|+..+ .....+.+.|++-++.++++|+.+.. -+ ..+.+ ...|. ..+++
T Consensus 140 ~g~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~ 219 (459)
T PRK08323 140 EGITSFKLFMAYKGALMLDDDELLRALQRAAELGALPMVHAENGDAIAYLQAKLLAEGKTGPEYHALSRPPEVEGEATNR 219 (459)
T ss_pred cCCCEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCEEEEEcCChHHHHHHHHHHHHcCCCChhhhhccCCHHHHHHHHHH
Confidence 34577887643 33456677899999999999988754 22 22221 11121 13444
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccc
Q 029925 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
-++.++.+|.... | .-++.++-.++|+.+++.|..|..|+.
T Consensus 220 ~~~~a~~~~~~~~-i----~H~s~~~~~~~i~~ak~~g~~vt~e~~ 260 (459)
T PRK08323 220 AIMLAELAGAPLY-I----VHVSCKEALEAIRRARARGQRVFGETC 260 (459)
T ss_pred HHHHHHHhCCCEE-E----EeCCCHHHHHHHHHHHHCCCeEEEEcC
Confidence 5778888886654 3 556667778999999999988765553
No 99
>PRK08445 hypothetical protein; Provisional
Probab=83.67 E-value=16 Score=33.11 Aligned_cols=99 Identities=16% Similarity=0.233 Sum_probs=69.2
Q ss_pred hcccccEEeeeCcccccCChhHHHHHHHHHHhCC--ceecC-c-cHHHHHHHhCCchHHHHHHHHHHcCCC-----EEEe
Q 029925 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD--VYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFD-----TIEL 120 (185)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~-G-tlfE~al~qg~~~~~~yl~~~k~lGF~-----~IEI 120 (185)
.....+-+=+.+|-...++.+.+.+-++..+++. +.+.. . +=..++...+.-..++-++.+|+.|++ .+|+
T Consensus 86 ~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e~L~~LkeAGl~~~~g~glE~ 165 (348)
T PRK08445 86 LAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKEVLERLQAKGLSSIPGAGAEI 165 (348)
T ss_pred HHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHHHHHHHHHcCCCCCCCCceee
Confidence 3344667777778888888888899999888875 44432 1 223333332312458999999999997 2786
Q ss_pred cCCc----c---cCChhHHHHHHHHHHHCCCeecc
Q 029925 121 NVGS----L---EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 121 SdGt----i---~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
++-. + ..+.++|.+.|+.+++.|+++..
T Consensus 166 ~~d~v~~~~~pk~~t~~~~i~~i~~a~~~Gi~~~s 200 (348)
T PRK08445 166 LSDRVRDIIAPKKLDSDRWLEVHRQAHLIGMKSTA 200 (348)
T ss_pred CCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCeeee
Confidence 6542 2 57788999999999999999844
No 100
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=83.18 E-value=3.1 Score=37.63 Aligned_cols=50 Identities=26% Similarity=0.296 Sum_probs=36.3
Q ss_pred HHHHHHHHHhCCceecC-cc-HHHHH----HHhCCchHHHHHHHHHHcCCCEEEecCC
Q 029925 72 IEEVVKRAHQHDVYVST-GD-WAEHL----IRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~~-Gt-lfE~a----l~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (185)
=.+-+..+|++||+|.+ |+ -++.+ .++. -++.-++.+++.|||.|.|.==
T Consensus 66 ~~~~~~~A~~~~v~v~~~~~~~~~~l~~~~~R~~--fi~siv~~~~~~gfDGIdIDwE 121 (358)
T cd02875 66 DDELLCYAHSKGVRLVLKGDVPLEQISNPTYRTQ--WIQQKVELAKSQFMDGINIDIE 121 (358)
T ss_pred CHHHHHHHHHcCCEEEEECccCHHHcCCHHHHHH--HHHHHHHHHHHhCCCeEEEccc
Confidence 35778899999999998 54 23321 1221 3688899999999999998643
No 101
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=83.13 E-value=6.5 Score=35.21 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=79.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCc-ccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP- 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~G-Ts~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~- 100 (185)
|..+.=|=|..-.+..++++++....++++- .+.- |.-.-|..+=.++++.++++|| .++.| ++=+..+.. |+
T Consensus 54 ~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~-~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~~~~~l~~lgR~ 132 (360)
T TIGR00539 54 SIFIGGGTPNTLSVEAFERLFESIYQHASLS-DDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSFRDDKLLFLGRQ 132 (360)
T ss_pred EEEeCCCchhcCCHHHHHHHHHHHHHhCCCC-CCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCChHHHHHhCCC
Confidence 6677766543226788999998887766421 1111 2223455556799999999999 66668 565444422 21
Q ss_pred ---chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 101 ---SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 101 ---~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+-++.+++.||+.| -+.-|.-.-+.++..+.++.+.+.|..
T Consensus 133 ~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (360)
T TIGR00539 133 HSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELKLAKELPIN 182 (360)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHHHHHccCCC
Confidence 245556778889999855 446777777888888999999988864
No 102
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=83.01 E-value=17 Score=27.40 Aligned_cols=98 Identities=22% Similarity=0.375 Sum_probs=70.4
Q ss_pred HHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC--Cceec--C-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH--DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~--gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
.+...+.....+..+=|++|...+.+ .+.+.++.+++. ++.+. + |..+ + ++.++.+.+.|+..
T Consensus 34 ~~~~~~~~~~~~~~i~~~ggep~~~~--~~~~~i~~~~~~~~~~~~~i~T~~~~~------~----~~~~~~l~~~g~~~ 101 (204)
T cd01335 34 LDIVLEAKERGVEVVILTGGEPLLYP--ELAELLRRLKKELPGFEISIETNGTLL------T----EELLKELKELGLDG 101 (204)
T ss_pred HHHHHHHHhcCceEEEEeCCcCCccH--hHHHHHHHHHhhCCCceEEEEcCcccC------C----HHHHHHHHhCCCce
Confidence 34444556677888889999988888 488889888888 66443 3 2222 1 56677788889999
Q ss_pred EEecCCccc-----------CChhHHHHHHHHHHHCCCeecccccc
Q 029925 118 IELNVGSLE-----------IPEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 118 IEISdGti~-----------i~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
|.+|--+.+ .+.++..+.|+++++.|..+...+=.
T Consensus 102 i~i~le~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 147 (204)
T cd01335 102 VGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLV 147 (204)
T ss_pred EEEEcccCCHHHHHHHhcCCcCHHHHHHHHHHHHHcCCCceEEEEE
Confidence 999877653 34477888999999988887554333
No 103
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=82.98 E-value=8.2 Score=33.88 Aligned_cols=102 Identities=22% Similarity=0.227 Sum_probs=64.8
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCC--hhHHHHHHHHHHh--CCceecCccHHHHHHHhCCchHH--HHHHHHHHcCC
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQ--HDVYVSTGDWAEHLIRNGPSAFK--EYVEDCKQVGF 115 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p--~~~L~eKI~l~~~--~gV~v~~GtlfE~al~qg~~~~~--~yl~~~k~lGF 115 (185)
.....+..+..=+||+|+|.--.-=.. -+.++.-++.+++ .+..+..-.+.... .-| .++ +..+.+++.||
T Consensus 69 ~~~aa~~~a~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~-r~~--~~~p~~l~~~a~~aG~ 145 (235)
T PF04476_consen 69 ASLAALGAAATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQ-RVG--SISPLDLPEIAAEAGF 145 (235)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchh-hhc--CCCHHHHHHHHHHcCC
Confidence 334566666667999999952110000 1123333333443 34555555566543 223 333 55788999999
Q ss_pred CEEEecCC-------cccCChhHHHHHHHHHHHCCCee
Q 029925 116 DTIELNVG-------SLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 116 ~~IEISdG-------ti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+=|... +--++.++..++++.++++|+.+
T Consensus 146 ~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~ 183 (235)
T PF04476_consen 146 DGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMC 183 (235)
T ss_pred CEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchh
Confidence 99988643 23689999999999999999987
No 104
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=82.83 E-value=5 Score=39.83 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=49.0
Q ss_pred CChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
-+++..++-|+.+|+.||.+. +|.=-+.|-. -++++|++.+ +-.+.+++|.++|+..++.|-
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGI~~v-----~A~~~PedK~~iV~~lQ~~G~ 504 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAAT-----------IAKEAGVDRF-----VAECKPEDKINVIREEQAKGH 504 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCceE-----EcCCCHHHHHHHHHHHHhCCC
Confidence 356678999999999999654 5754333322 2788998743 568899999999999999998
Q ss_pred ee
Q 029925 145 KA 146 (185)
Q Consensus 145 ~v 146 (185)
.|
T Consensus 505 ~V 506 (673)
T PRK14010 505 IV 506 (673)
T ss_pred EE
Confidence 77
No 105
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=82.73 E-value=4.8 Score=39.95 Aligned_cols=70 Identities=20% Similarity=0.147 Sum_probs=50.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+++-.++-|+.+|+.||.+. +|.=-+.|-. -++++|++.+ .-...+++|.++|+..++.|-.
T Consensus 446 ~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~a-----------IA~elGId~v-----~A~~~PedK~~iV~~lQ~~G~~ 509 (679)
T PRK01122 446 VKPGIKERFAELRKMGIKTVMITGDNPLTAAA-----------IAAEAGVDDF-----LAEATPEDKLALIRQEQAEGRL 509 (679)
T ss_pred CchhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCcEE-----EccCCHHHHHHHHHHHHHcCCe
Confidence 34568899999999999654 5754444422 2778888643 5678999999999999999976
Q ss_pred e-ccccccc
Q 029925 146 A-KPKFAVM 153 (185)
Q Consensus 146 v-~~E~G~k 153 (185)
| -.-.|++
T Consensus 510 VaMtGDGvN 518 (679)
T PRK01122 510 VAMTGDGTN 518 (679)
T ss_pred EEEECCCcc
Confidence 6 3333433
No 106
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=82.59 E-value=29 Score=29.50 Aligned_cols=112 Identities=17% Similarity=0.247 Sum_probs=68.1
Q ss_pred chhHHHHHHHhhcccccEEeeeCccccc-CChhHHHHHHHHHHhCC-------------ceecCccHHHHHHHhCCchHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSL-MPKPFIEEVVKRAHQHD-------------VYVSTGDWAEHLIRNGPSAFK 104 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~g-------------V~v~~GtlfE~al~qg~~~~~ 104 (185)
.+..+.++++..-+-+|.+=+|.=.+-. .+-..+++..+.+.++| +++..=+.+-. + +. ..+
T Consensus 16 ~~~~~~~~~~~l~~~ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~-~-~~--~~~ 91 (244)
T PRK13125 16 NVESFKEFIIGLVELVDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLED-Y-VD--SLD 91 (244)
T ss_pred CHHHHHHHHHHHHhhCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecch-h-hh--CHH
Confidence 3344555555432339999999855444 23444555544444333 33211011122 1 22 588
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
+|++.|++.|.+.|=|=|-.++- .++-.++++.+++.|+++..++.-..+
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~-~~~~~~~~~~~~~~Gl~~~~~v~p~T~ 141 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDY-PDDLEKYVEIIKNKGLKPVFFTSPKFP 141 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCc-HHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 99999999999999985433322 356679999999999999776665443
No 107
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=82.56 E-value=3.4 Score=36.93 Aligned_cols=51 Identities=18% Similarity=0.393 Sum_probs=36.1
Q ss_pred chHHHHHHHHHHcCCCEEEe---------cCCcccCC-hhHHHHHHHHHHHCCCeeccccc
Q 029925 101 SAFKEYVEDCKQVGFDTIEL---------NVGSLEIP-EETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEI---------SdGti~i~-~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
+.-.+-|+.+|++||++|++ ..|..+.+ ..+..++|+.|+++||.|+--.|
T Consensus 24 ~~W~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpG 84 (319)
T PF01301_consen 24 EYWRDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPG 84 (319)
T ss_dssp GGHHHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEE
T ss_pred hHHHHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEeccc
Confidence 35677888899999999987 45777776 45678999999999999965544
No 108
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=82.55 E-value=3.2 Score=36.89 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=37.0
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc------------cCChhHHHHHHHHHHHCCCee
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSL------------EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti------------~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+..++|++.|.++||++|-|++|=- ..+..+..++|+.++++|..|
T Consensus 32 ~~~k~yIDfAa~~G~eYvlvD~GW~~~~~~~~~d~~~~~~~~dl~elv~Ya~~KgVgi 89 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLVDAGWYGWEKDDDFDFTKPIPDFDLPELVDYAKEKGVGI 89 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEEBTTCCGS--TTT--TT-B-TT--HHHHHHHHHHTT-EE
T ss_pred HHHHHHHHHHHHcCCCEEEeccccccccccccccccccCCccCHHHHHHHHHHcCCCE
Confidence 3689999999999999999999975 578889999999999999776
No 109
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=82.50 E-value=0.89 Score=35.60 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=59.4
Q ss_pred ccEEeeeCcccccCC--hhHHHHHHHHHHhCCceecCc---c-HHHHH---------HHhCCchHHHHHHHHHHcCCCEE
Q 029925 54 VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTG---D-WAEHL---------IRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 54 ID~lKfg~GTs~l~p--~~~L~eKI~l~~~~gV~v~~G---t-lfE~a---------l~qg~~~~~~yl~~~k~lGF~~I 118 (185)
.|.+-+......... .+.+++-.++++++||.+..- + +...- -.+..+.+++.++.|+.+|.+.|
T Consensus 9 ~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lg~~~i 88 (213)
T PF01261_consen 9 FDGVELRFDDGQPWDEKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLAKRLGAKYI 88 (213)
T ss_dssp HSEEEEEHHHHSHHTHHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHHHHHTBSEE
T ss_pred CCEEEEecCCCcccccchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHHHHhCCCce
Confidence 445555443333332 245889999999999984431 1 11100 00001268899999999999999
Q ss_pred EecCC----cccCChh--------HHHHHHHHHHHCCCeeccccc
Q 029925 119 ELNVG----SLEIPEE--------TLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 119 EISdG----ti~i~~~--------~r~~lI~~~~~~Gf~v~~E~G 151 (185)
=+.-| ....+.+ ...++.+.+++.|+++..|--
T Consensus 89 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~ 133 (213)
T PF01261_consen 89 VVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH 133 (213)
T ss_dssp EEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S
T ss_pred eecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc
Confidence 99977 2222222 335666778888988866643
No 110
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=82.10 E-value=2.3 Score=36.08 Aligned_cols=20 Identities=25% Similarity=0.620 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHcCCCEEEec
Q 029925 102 AFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS 121 (185)
.+++-++.++++||+.|||+
T Consensus 11 ~l~~~l~~a~~~G~d~vEl~ 30 (279)
T cd00019 11 GLENALKRAKEIGFDTVAMF 30 (279)
T ss_pred cHHHHHHHHHHcCCCEEEEE
Confidence 34444444444444444443
No 111
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=82.03 E-value=5.1 Score=34.85 Aligned_cols=98 Identities=18% Similarity=0.231 Sum_probs=58.6
Q ss_pred HHHHHHhhcccccEEeeeCccc--------ccCChhHHHHHHHHHHhCCceecCccHHH----HHHHhCC-chHHHHHHH
Q 029925 43 LEDIFESMGQFVDGLKFSGGSH--------SLMPKPFIEEVVKRAHQHDVYVSTGDWAE----HLIRNGP-SAFKEYVED 109 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs--------~l~p~~~L~eKI~l~~~~gV~v~~GtlfE----~al~qg~-~~~~~yl~~ 109 (185)
.-..|..+| ||.+=+|++++ .-.|.+.+++-.+...+..+ ..|.= ..+..-| +-.++.++.
T Consensus 26 ia~~L~~~G--v~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l----~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 26 IAEALDEAG--FFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPL----QMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHcC--CCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCce----ehhcccccccCccCCCcHHHHHHHHH
Confidence 344677778 99999999874 33333334433333222111 22210 0000011 136888888
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+.+.|++.|-|+...-++ +.-...|+.+++.|++|..
T Consensus 100 ~~~~g~~~iri~~~~~~~--~~~~~~i~~ak~~G~~v~~ 136 (275)
T cd07937 100 AAKNGIDIFRIFDALNDV--RNLEVAIKAVKKAGKHVEG 136 (275)
T ss_pred HHHcCCCEEEEeecCChH--HHHHHHHHHHHHCCCeEEE
Confidence 999999999997765553 4455788999999988754
No 112
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=81.97 E-value=7.6 Score=36.06 Aligned_cols=120 Identities=15% Similarity=0.116 Sum_probs=79.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P- 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~- 100 (185)
|..+.=|-+....+..++++++......++.+-.-=|.-.-|..+-++++++++++|+ .++.| ++-+..+.. + .
T Consensus 105 ~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~L~~l~r~~ 184 (453)
T PRK09249 105 QLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEVQKAVNRIQ 184 (453)
T ss_pred EEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCCC
Confidence 4445545433225788999999887765432100012234455556899999999999 66668 665554422 1 1
Q ss_pred --chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 101 --SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 101 --~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.+-++.+++.||+ .+-+.-|.-.-+.++..+.++.+.+.|..-
T Consensus 185 ~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 234 (453)
T PRK09249 185 PFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVLELRPDR 234 (453)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 2455677888899997 455667777888899999999999988653
No 113
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=81.73 E-value=14 Score=30.79 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=30.4
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCcee
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV 86 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v 86 (185)
.+....++++..++|+|++|+|+--..-+.. +-|+.+++.+..+
T Consensus 9 ~~~~a~~~~~~~~~~v~~iKig~~l~~~~G~----~~v~~l~~~~~~v 52 (213)
T TIGR01740 9 TKDEALDLADSLGPEIEVIKVGIDLLLDGGD----KIIDELAKLNKLI 52 (213)
T ss_pred CHHHHHHHHHhcCCcCcEEEECHHHHHhcCH----HHHHHHHHcCCCE
Confidence 5678888999999999999999855444443 3344455545433
No 114
>cd01314 D-HYD D-hydantoinases (D-HYD) also called dihydropyrimidases (DHPase) and related proteins; DHPases are a family of enzymes that catalyze the reversible hydrolytic ring opening of the amide bond in five- or six-membered cyclic diamides, like dihydropyrimidine or hydantoin. The hydrolysis of dihydropyrimidines is the second step of reductive catabolism of pyrimidines in human. The hydrolysis of 5-substituted hydantoins in microorganisms leads to enantiomerically pure N-carbamyl amino acids, which are used for the production of antibiotics, peptide hormones, pyrethroids, and pesticides. HYDs are classified depending on their stereoselectivity. This family also includes collapsin response regulators (CRMPs), cytosolic proteins involved in neuronal differentiation and axonal guidance which have strong homology to DHPases, but lack most of the active site residues.
Probab=81.61 E-value=24 Score=32.01 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=60.3
Q ss_pred ccEEeeeCcc--cccCChhHHHHHHHHHHhCCceecC--cc--HHHHHHH----hCCc----------------hHHHHH
Q 029925 54 VDGLKFSGGS--HSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIR----NGPS----------------AFKEYV 107 (185)
Q Consensus 54 ID~lKfg~GT--s~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~al~----qg~~----------------~~~~yl 107 (185)
++.+|+..+. ....+.+.|++-++.++++|+.+.. -+ +.+.... +|.. .+...+
T Consensus 144 ~~~ik~~~~~~~~~~~s~~~l~~~~~~a~~~g~~v~~H~E~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~v~~~~ 223 (447)
T cd01314 144 ISSFKVFMAYKGLLMVDDEELLDVLKRAKELGALVMVHAENGDVIAELQKKLLAQGKTGPEYHALSRPPEVEAEATARAI 223 (447)
T ss_pred CCEEEEEeccCCCCCCCHHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHHHcCCCChHHhhhcCCHHHHHHHHHHHH
Confidence 4678876433 2344778899999999999988753 22 3332221 1311 112235
Q ss_pred HHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccc
Q 029925 108 EDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 108 ~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
+.++.+|...+ ..-++..+-.++|+.+++.|..|..|+.
T Consensus 224 ~la~~~~~~~~-----~~H~s~~~~~~~i~~~k~~g~~v~~~~~ 262 (447)
T cd01314 224 RLAELAGAPLY-----IVHVSSKEAADEIARARKKGLPVYGETC 262 (447)
T ss_pred HHHHHhCCCEE-----EEeCCCHHHHHHHHHHHHCCCeEEEecC
Confidence 66778888776 5566777777899999999987755543
No 115
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=81.56 E-value=4.8 Score=34.14 Aligned_cols=72 Identities=18% Similarity=0.305 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHhCCceecC--ccH----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 029925 70 PFIEEVVKRAHQHDVYVST--GDW----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--Gtl----fE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (185)
..+...++.+|++|++|.+ |+| +..++ .++. -++..++.+++.|||.|.|.--....+.+....+|+.+
T Consensus 46 ~~~~~~~~~~~~~~~kvl~sigg~~~~~~~~~~-~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~~~~~~~~fv~~L 124 (253)
T cd06545 46 SELNSVVNAAHAHNVKILISLAGGSPPEFTAAL-NDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDVTFGDYLVFIRAL 124 (253)
T ss_pred HHHHHHHHHHHhCCCEEEEEEcCCCCCcchhhh-cCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCccHhHHHHHHHHH
Confidence 3477888999999998886 543 22222 1111 46788899999999999997655443345566666666
Q ss_pred HHC
Q 029925 140 KSA 142 (185)
Q Consensus 140 ~~~ 142 (185)
++.
T Consensus 125 r~~ 127 (253)
T cd06545 125 YAA 127 (253)
T ss_pred HHH
Confidence 653
No 116
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=81.46 E-value=5.7 Score=32.56 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=51.8
Q ss_pred HHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 75 VVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 75 KI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
..++++++|| .++ .|--.++|+..- ...+.++||+.+=++|++-+.+.+.....++.++..|.++
T Consensus 129 L~~~L~~~~i~~lii~G~~t~~CV~~T-------~~~a~~~g~~v~v~~Da~~~~~~~~~~~al~~~~~~G~~i 195 (196)
T cd01011 129 LAEYLRERGIDRVDVVGLATDYCVKAT-------ALDALKAGFEVRVLEDACRAVDPETIERAIEEMKEAGVVL 195 (196)
T ss_pred HHHHHHHCCCCEEEEEEecccHHHHHH-------HHHHHHCCCEEEEeccccCCCCHHHHHHHHHHHHHccCEE
Confidence 3556778999 444 477888888763 3346668999999999999999999999999999988765
No 117
>cd01315 L-HYD_ALN L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.
Probab=81.39 E-value=33 Score=31.07 Aligned_cols=124 Identities=14% Similarity=0.135 Sum_probs=72.9
Q ss_pred CCCceeEecCCCC---CCcchhHHHHHHHhhc--ccccEEeee------------------------Ccc-----cccCC
Q 029925 23 RFGVTEMRSPHYT---LSSSHNVLEDIFESMG--QFVDGLKFS------------------------GGS-----HSLMP 68 (185)
Q Consensus 23 ~~GlTmV~DkG~s---~~~g~~~~eDlLe~ag--~yID~lKfg------------------------~GT-----s~l~p 68 (185)
..|+|.|+|-+.. .......+++.++.+. .++|+.-.+ .+. ....+
T Consensus 81 ~gGvTtv~d~p~~~~p~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ei~~l~~~G~~giKv~~~~~~~~~~~~~~ 160 (447)
T cd01315 81 AGGITTIIDMPLNSIPPTTTVENLEAKLEAAQGKLHVDVGFWGGLVPGNLDQLRPLDEAGVVGFKCFLCPSGVDEFPAVD 160 (447)
T ss_pred hCCceEEEeCCCCCCCCcCCHHHHHHHHHHhccCceeeEEEEEeecCCCHHHHHHHHHcCCcEEEEEecccCCCCcccCC
Confidence 3499999987531 2225567777777653 355553222 111 01235
Q ss_pred hhHHHHHHHHHHhCCceecC--c--cHHHHHHH--------------h------CCchHHHHHHHHHHcCCCEEEecCCc
Q 029925 69 KPFIEEVVKRAHQHDVYVST--G--DWAEHLIR--------------N------GPSAFKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--G--tlfE~al~--------------q------g~~~~~~yl~~~k~lGF~~IEISdGt 124 (185)
.+.+++-++.++++|+.++. . .++..... + -...+.++++.+++.|... =|+-
T Consensus 161 ~~~l~~~~~~a~~~g~~v~vH~e~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~e~~~~~~~~~la~~~g~~i-hi~h-- 237 (447)
T cd01315 161 DEQLEEAMKELAKTGSVLAVHAENPEITEALQEQAKAKGKRDYRDYLASRPVFTEVEAIQRILLLAKETGCRL-HIVH-- 237 (447)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHhHhhcCCCChHHhhccCCHHHHHHHHHHHHHHHHHhCCCE-EEEe--
Confidence 56788888888888887764 3 23221110 0 0125788888999998543 2222
Q ss_pred ccCChhHHHHHHHHHHHCCCeeccccc
Q 029925 125 LEIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
++...=.++|+.++..|+.+..|+-
T Consensus 238 --~s~~~~~~~i~~~~~~g~~i~~e~~ 262 (447)
T cd01315 238 --LSSAEAVPLIREARAEGVDVTVETC 262 (447)
T ss_pred --CCCHHHHHHHHHHHHCCCceEEEec
Confidence 2235567888999999988765543
No 118
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=81.30 E-value=8.2 Score=35.52 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCceecC----c-c----HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHH----HHHHHHH
Q 029925 73 EEVVKRAHQHDVYVST----G-D----WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETL----LRYVRLV 139 (185)
Q Consensus 73 ~eKI~l~~~~gV~v~~----G-t----lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r----~~lI~~~ 139 (185)
.--..+++++.|+|+. | + |||.++.- +.+++..|.+.||+.|=|.--. +|.++= .++++++
T Consensus 77 ~~v~~~A~~~~VPValHLDHg~~~~~~~~~~~~~a----~~~~~~~a~~~GftSVMiDgS~--lp~eENI~~TkevVe~A 150 (345)
T cd00946 77 HHVRSMAEHYGVPVVLHTDHCAKKLLPWFDGLLEA----DEEYFKQHGEPLFSSHMLDLSE--EPLEENIEICKKYLERM 150 (345)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCccchhhHHHHHH----HHHHHHHhccCCCceEEeeCCC--CCHHHHHHHHHHHHHHH
Confidence 3445688899999885 5 4 68888765 4688999999999999775443 455543 3567888
Q ss_pred HHCCCeeccccccccCCC
Q 029925 140 KSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 140 ~~~Gf~v~~E~G~k~~~~ 157 (185)
...|.-|-.|+|.=-+.+
T Consensus 151 h~~gvsVEaElG~igg~e 168 (345)
T cd00946 151 AKINMWLEMEIGITGGEE 168 (345)
T ss_pred HHcCCEEEEEecccCCcc
Confidence 889999999999864443
No 119
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=81.22 E-value=9.5 Score=31.95 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=60.7
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
......++++..++|+|++|+|+.- +.. ...+-|+.+++.+.++..- =+..+= +-+..|.+.+.+.|+|+
T Consensus 9 ~~~~a~~i~~~~~~~v~~iKvg~~l--~~~--~g~~~i~~l~~~~~~i~~DlK~~DIg-----~tv~~~~~~~~~~gad~ 79 (216)
T cd04725 9 DEEFALALIDALGPYVCAVKVGLEL--FEA--AGPEIVKELRELGFLVFLDLKLGDIP-----NTVAAAAEALLGLGADA 79 (216)
T ss_pred CHHHHHHHHHhcCCcccEEEECHHH--HHh--cCHHHHHHHHHCCCcEEEEeecCchH-----HHHHHHHHHHHhcCCCE
Confidence 5568889999999999999999744 332 2567788888877666543 232221 13334445556678888
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCC
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
+-|+- -...+....+++.+++.+
T Consensus 80 ~Tvh~---~~G~~~l~~~~~~~~~~~ 102 (216)
T cd04725 80 VTVHP---YGGSDMLKAALEAAEEKG 102 (216)
T ss_pred EEECC---cCCHHHHHHHHHHHhccC
Confidence 88874 444566666666666443
No 120
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=81.10 E-value=11 Score=34.20 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=82.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEE-eeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~ 100 (185)
|.-++=|-|..-.+..++.+|+....+++-. -+ |.-..|..+-.+++++++++|| .++.| ++=+..+.. | +
T Consensus 59 tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~ei---tiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~ 135 (353)
T PRK05904 59 TIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEF---TIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT 135 (353)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhcCCCCeE---EEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC
Confidence 5556656443327789999999988875321 11 3445577777899999999999 77778 665655532 2 1
Q ss_pred ---chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 101 ---SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 101 ---~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.+-++.|++.||+ .+.+--|.=.-+.++..+.++.+.+.+..-
T Consensus 136 ~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~~l~p~~ 186 (353)
T PRK05904 136 HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFILKHKINH 186 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHHhcCCCE
Confidence 2355566778889998 456667777788888888899998887653
No 121
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=80.88 E-value=13 Score=31.36 Aligned_cols=95 Identities=11% Similarity=0.070 Sum_probs=58.5
Q ss_pred HHhhcccccEEeeeCcccccCC--------hhHHHHHHHHHHhCCceecC--ccHHH-HHH--HhCCc----hHHHHHHH
Q 029925 47 FESMGQFVDGLKFSGGSHSLMP--------KPFIEEVVKRAHQHDVYVST--GDWAE-HLI--RNGPS----AFKEYVED 109 (185)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p--------~~~L~eKI~l~~~~gV~v~~--GtlfE-~al--~qg~~----~~~~yl~~ 109 (185)
|....+.+|+|=+ |+...=.. .+..++.|..+|+.|++|.. |+|.. ..+ ...+. -++..++.
T Consensus 21 l~~~pds~D~v~l-f~~~~~~~~~~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~~~~~~~~~~~~~~fa~~l~~~ 99 (255)
T cd06542 21 LLNLPDSVDMVSL-FAANINLDAATAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGAGFANNLSDAAAKAYAKAIVDT 99 (255)
T ss_pred cccCCCcceEEEE-cccccCcccccchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCCCccccCCHHHHHHHHHHHHHH
Confidence 3345588888877 55432222 36688999999999998864 54321 110 11111 25666778
Q ss_pred HHHcCCCEEEecCCccc--------CChhHHHHHHHHHHHC
Q 029925 110 CKQVGFDTIELNVGSLE--------IPEETLLRYVRLVKSA 142 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~--------i~~~~r~~lI~~~~~~ 142 (185)
|+++|||.|-|.--... -..+....+|+.+++.
T Consensus 100 v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~~ 140 (255)
T cd06542 100 VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRKY 140 (255)
T ss_pred HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHHH
Confidence 88999999988543221 1345566778777764
No 122
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=80.37 E-value=2.8 Score=38.45 Aligned_cols=60 Identities=25% Similarity=0.303 Sum_probs=31.1
Q ss_pred CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC----ChhHHHHHHHHHHHCCCeecccc
Q 029925 83 DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI----PEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 83 gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i----~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
||-|||| ..+| ...+|++.++++||+.|=.|=-..+= -.+...++++.|++.||+|...+
T Consensus 3 GiSvY~~~~~~~--------~~~~yi~~a~~~Gf~~iFTSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Di 67 (357)
T PF05913_consen 3 GISVYPGQSSFE--------ENKAYIEKAAKYGFKRIFTSLHIPEDDPEDYLERLKELLKLAKELGMEVIADI 67 (357)
T ss_dssp EEEE-CCCS-HH--------HHHHHHHHHHCTTEEEEEEEE---------HHHHHHHHHHHHHHCT-EEEEEE
T ss_pred EEEEeCCCCCHH--------HHHHHHHHHHHCCCCEEECCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 5566666 3222 44667777777777776655222221 11333466677777777774443
No 123
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=80.28 E-value=11 Score=31.86 Aligned_cols=107 Identities=12% Similarity=0.066 Sum_probs=65.0
Q ss_pred hHHHHHHHhhc-ccccEEeeeCcccc------cCChhHHHHHHHHHHhCCceecCc--cH---------HHHHHHhCCch
Q 029925 41 NVLEDIFESMG-QFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQHDVYVSTG--DW---------AEHLIRNGPSA 102 (185)
Q Consensus 41 ~~~eDlLe~ag-~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~gV~v~~G--tl---------fE~al~qg~~~ 102 (185)
.+.=+.+..+| ++|++. ..... =++.+.+++.-++++++|+.++.. +. -+..-.+.-+.
T Consensus 24 ~e~~~~~~~~G~~~iEl~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~ 100 (283)
T PRK13209 24 LEKLAIAKTAGFDFVEMS---VDESDERLARLDWSREQRLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEI 100 (283)
T ss_pred HHHHHHHHHcCCCeEEEe---cCccccchhccCCCHHHHHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHH
Confidence 34555555566 666652 22211 113456888899999999987531 11 11111111126
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc--CC--------hhHHHHHHHHHHHCCCeecccc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLE--IP--------EETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~--i~--------~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+++.++.|+++|.+.|=+..+... .+ .+...++.+.+++.|.++..|-
T Consensus 101 ~~~~i~~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLAGYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHcCCCEEEECCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 889999999999999987644321 11 1223567888889999887775
No 124
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=79.32 E-value=14 Score=29.42 Aligned_cols=120 Identities=19% Similarity=0.262 Sum_probs=67.4
Q ss_pred CccccccccCCCCCCCCCCCCCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHh
Q 029925 2 SGYYYGWKSFDEYEDRAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ 81 (185)
Q Consensus 2 ~~~~~~~~~f~~l~~R~~KPR~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~ 81 (185)
.||+..|..= ..+. +.+-...++|+|+=--+.+. . .|.- .. +.+ .+.+...+.+..+++
T Consensus 2 v~y~~~w~~~-~~~~-~~~~~~~~~thvi~~f~~v~----~-------~~~~---~~--~~~---~~~~~~~~~i~~l~~ 60 (210)
T cd00598 2 ICYYDGWSSG-RGPD-PTDIPLSLCTHIIYAFAEIS----S-------DGSL---NL--FGD---KSEEPLKGALEELAS 60 (210)
T ss_pred EEEEcccccc-CCCC-hhhCCcccCCEEEEeeEEEC----C-------CCCE---ec--ccC---cccHHHHHHHHHHHH
Confidence 4778888652 2222 45666668888775443221 0 0000 00 111 122346677777777
Q ss_pred C--CceecC--ccHHHHH---HHhCCc----hHHHHHHHHHHcCCCEEEecCCcccCC----hhHHHHHHHHHHHC
Q 029925 82 H--DVYVST--GDWAEHL---IRNGPS----AFKEYVEDCKQVGFDTIELNVGSLEIP----EETLLRYVRLVKSA 142 (185)
Q Consensus 82 ~--gV~v~~--GtlfE~a---l~qg~~----~~~~yl~~~k~lGF~~IEISdGti~i~----~~~r~~lI~~~~~~ 142 (185)
. |++|.+ |+|-... +..++. -++...+.+++.|||.|+|.=-..... .+....+|+.+++.
T Consensus 61 ~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 61 KKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSA 136 (210)
T ss_pred hCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHH
Confidence 6 888776 6533211 122211 367788889999999999976555444 35566777777665
No 125
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=78.71 E-value=14 Score=34.26 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=78.3
Q ss_pred EecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh--CC---
Q 029925 29 MRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN--GP--- 100 (185)
Q Consensus 29 V~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q--g~--- 100 (185)
-+.=|-+..-.+..+.++++..-.+..+.+-..-|.-+.|..+-.++++.++++|+ .++.| ++=+..+.. ..
T Consensus 107 ~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~l~r~~~~ 186 (455)
T TIGR00538 107 HWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQAVNRIQPE 186 (455)
T ss_pred EECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHhCCCCCH
Confidence 34444332225788899998887764322211123344555556789999999999 66667 555444422 11
Q ss_pred chHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 101 SAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.+-++.+++.||+ .+-+.-|.-.-+.++..+.++.+.+.+..-
T Consensus 187 ~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~~~l~~~~ 234 (455)
T TIGR00538 187 EMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKVAELNPDR 234 (455)
T ss_pred HHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHHHhcCCCE
Confidence 2356678888899998 456667777788899999999999988653
No 126
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=78.56 E-value=8.4 Score=36.37 Aligned_cols=95 Identities=14% Similarity=0.137 Sum_probs=71.5
Q ss_pred HHHHHHHhh-cccccEEeeeCcccccCChhHHHHHHHHHHhCCceec--Cc-cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 42 VLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--TG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 42 ~~eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
..+..++.| ..-||.+-+....+-+. .+++-|+.++++|..+. .. +.-. ...++.+.++.+.+.+.|.+.
T Consensus 97 vv~~~v~~A~~~Gvd~irif~~lnd~~---n~~~~v~~ak~~G~~v~~~i~~t~~p---~~~~~~~~~~a~~l~~~Gad~ 170 (448)
T PRK12331 97 VVESFVQKSVENGIDIIRIFDALNDVR---NLETAVKATKKAGGHAQVAISYTTSP---VHTIDYFVKLAKEMQEMGADS 170 (448)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcHH---HHHHHHHHHHHcCCeEEEEEEeecCC---CCCHHHHHHHHHHHHHcCCCE
Confidence 455555554 44599999988766553 49999999999997542 22 2211 133346777888889999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHC
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|=|.|-.--+.+.+=.++|+.+++.
T Consensus 171 I~i~Dt~G~l~P~~v~~lv~alk~~ 195 (448)
T PRK12331 171 ICIKDMAGILTPYVAYELVKRIKEA 195 (448)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 127
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=78.53 E-value=35 Score=28.94 Aligned_cols=81 Identities=16% Similarity=0.176 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHhCCceecC---cc-----HH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc---CCh-----
Q 029925 69 KPFIEEVVKRAHQHDVYVST---GD-----WA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE---IPE----- 129 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~---Gt-----lf---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~---i~~----- 129 (185)
...+++--+++.++||.++. +. |. +....+.-+.+++.++.|+++|.+.|=+..+... .+.
T Consensus 51 ~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (279)
T TIGR00542 51 REQRLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYYEEHDEETRRR 130 (279)
T ss_pred HHHHHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCcccccCcCCHHHHHH
Confidence 45578888899999998763 21 11 1111122225888899999999999987654221 112
Q ss_pred --hHHHHHHHHHHHCCCeeccc
Q 029925 130 --ETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 130 --~~r~~lI~~~~~~Gf~v~~E 149 (185)
+...++++.|++.|.++.-|
T Consensus 131 ~~~~l~~l~~~A~~~Gv~l~lE 152 (279)
T TIGR00542 131 FREGLKEAVELAARAQVTLAVE 152 (279)
T ss_pred HHHHHHHHHHHHHHcCCEEEEe
Confidence 23346677888889988777
No 128
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=78.46 E-value=3.6 Score=33.93 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------cC-----ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL--------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti--------------~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+.+=|+++++|||++|++|-=+- .+ +.++..+||+.+.++|++|.-.+=..+.+
T Consensus 6 i~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~V~NH~~ 78 (316)
T PF00128_consen 6 IIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDVVPNHTS 78 (316)
T ss_dssp HHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEEETSEEE
T ss_pred HHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEeeeccccc
Confidence 34446788999999999873111 11 24788999999999999996665555443
No 129
>PRK15447 putative protease; Provisional
Probab=78.32 E-value=14 Score=32.71 Aligned_cols=89 Identities=21% Similarity=0.140 Sum_probs=52.8
Q ss_pred HHHHHHHhhcc-cccEEeeeCccccc---CChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCC
Q 029925 42 VLEDIFESMGQ-FVDGLKFSGGSHSL---MPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGF 115 (185)
Q Consensus 42 ~~eDlLe~ag~-yID~lKfg~GTs~l---~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF 115 (185)
.++++.....+ -+|-|=+|...... +..+.+++-++.+|++|.++|.- ..+.. .. .++.+.+.++ .|.
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~---~~--e~~~l~~~l~-~~~ 89 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEA---PS--ELKELRRLVE-NGE 89 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccC---HH--HHHHHHHHHh-cCC
Confidence 45666655533 48888888554332 55567999999999999988764 22110 11 2333333222 367
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 116 DTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.|.|+| ...++.+++.|+.+
T Consensus 90 ~~v~v~d----------~g~l~~~~e~~~~l 110 (301)
T PRK15447 90 FLVEAND----------LGAVRLLAERGLPF 110 (301)
T ss_pred CEEEEeC----------HHHHHHHHhcCCCE
Confidence 7888766 34445555555555
No 130
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=77.92 E-value=5.3 Score=35.45 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 029925 71 FIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (185)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (185)
.+.+-|+.++++|+.|..- |++. ..+.+.+.+++++++++|++.|-||-++- -++.++-.++++.+.
T Consensus 150 ~~l~~I~~l~~~G~~v~v~~tv~~---~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~~~~~~~ 226 (318)
T TIGR03470 150 RAVEAIREAKARGFRVTTNTTLFN---DTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKKLFREVL 226 (318)
T ss_pred HHHHHHHHHHHCCCcEEEEEEEeC---CCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHHHHHHHH
Confidence 3567788888888776654 3332 13445788888888888888888876532 244555455555544
Q ss_pred H
Q 029925 141 S 141 (185)
Q Consensus 141 ~ 141 (185)
+
T Consensus 227 ~ 227 (318)
T TIGR03470 227 S 227 (318)
T ss_pred h
Confidence 3
No 131
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=77.91 E-value=14 Score=30.21 Aligned_cols=97 Identities=15% Similarity=0.287 Sum_probs=63.2
Q ss_pred hhHHHHHHHhhcc-cccEEeee------------CcccccCChhHHHHHHHHHHhC-CceecCc---cHHHHHHHhCCch
Q 029925 40 HNVLEDIFESMGQ-FVDGLKFS------------GGSHSLMPKPFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGPSA 102 (185)
Q Consensus 40 ~~~~eDlLe~ag~-yID~lKfg------------~GTs~l~p~~~L~eKI~l~~~~-gV~v~~G---tlfE~al~qg~~~ 102 (185)
+..+.+..+.+-+ ..|.|++- +|++.+-..+.+.+.++-.++. ++++.-. +|-+. ..
T Consensus 66 ~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~------~~ 139 (231)
T cd02801 66 PETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDE------EE 139 (231)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCc------hH
Confidence 4455444444444 68999885 5666777778889999888764 2333332 34221 26
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA 142 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~ 142 (185)
..++++.+.+.|++.|.|+.++... ...-..++++++++.
T Consensus 140 ~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~ 181 (231)
T cd02801 140 TLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEA 181 (231)
T ss_pred HHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhC
Confidence 7788889999999999999987532 212234667777664
No 132
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=77.52 E-value=22 Score=30.83 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=52.1
Q ss_pred HHHHHHHhhcccccEEeeeCcc--------cccCChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GT--------s~l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~~yl~~~ 110 (185)
..-+.++.++.+.|++=+-.|+ +.....+.+.+.++-.++. ++++.. .. +.+...++.+.+
T Consensus 107 ~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~--------~~~~~~~~a~~l 178 (300)
T TIGR01037 107 EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP--------NVTDITEIAKAA 178 (300)
T ss_pred HHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC--------ChhhHHHHHHHH
Confidence 3444455555678888876664 4556677889999888875 666553 21 112456777889
Q ss_pred HHcCCCEEEecCCcc
Q 029925 111 KQVGFDTIELNVGSL 125 (185)
Q Consensus 111 k~lGF~~IEISdGti 125 (185)
.+.|.|.|.|++++.
T Consensus 179 ~~~G~d~i~v~nt~~ 193 (300)
T TIGR01037 179 EEAGADGLTLINTLR 193 (300)
T ss_pred HHcCCCEEEEEccCC
Confidence 999999999997653
No 133
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=77.50 E-value=14 Score=33.13 Aligned_cols=120 Identities=13% Similarity=0.115 Sum_probs=78.3
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-Cc
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~~ 101 (185)
|.-+.=|-+..-++..++++++....++++..---=|.-.-|..+-.++++.++++|| .++.| ++-+..+.. | ..
T Consensus 62 ~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~~ 141 (375)
T PRK05628 62 TVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRTH 141 (375)
T ss_pred EEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 4444545433226789999999887765432211112223566666799999999999 77778 666665533 1 12
Q ss_pred ---hHHHHHHHHHHcCCCEEEec--CCcccCChhHHHHHHHHHHHCCCee
Q 029925 102 ---AFKEYVEDCKQVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ---~~~~yl~~~k~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.+-++.+++.||+.|-++ -|.=.-+.+++.+-++.+.+.|..-
T Consensus 142 s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~ 191 (375)
T PRK05628 142 TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDH 191 (375)
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCE
Confidence 35556667888999855433 5656677788888889988888653
No 134
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=77.50 E-value=35 Score=29.61 Aligned_cols=93 Identities=13% Similarity=0.087 Sum_probs=63.1
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCcc----HHHHHHHh--CC------------ch
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP------------SA 102 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al~q--g~------------~~ 102 (185)
..+.+++.-+++|| +|.+...+-+++.+++.+...++. +++++-.| -+|.|+.. |. ++
T Consensus 31 ~A~~~~~~GAdiID---IG~~~~~~~~~ee~~r~v~~i~~~~~~piSIDT~~~~v~e~aL~~~~G~~iINsIs~~~~~e~ 107 (252)
T cd00740 31 VARQQVEGGAQILD---LNVDYGGLDGVSAMKWLLNLLATEPTVPLMLDSTNWEVIEAGLKCCQGKCVVNSINLEDGEER 107 (252)
T ss_pred HHHHHHHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHHhcCCcEEeeCCcHHHHHHHHhhCCCCcEEEeCCCCCCccc
Confidence 44555666677777 587776566677777777778876 99998864 67888874 21 24
Q ss_pred HHHHHHHHHHcCCCEEEecCC--cccCChhHHHHHHH
Q 029925 103 FKEYVEDCKQVGFDTIELNVG--SLEIPEETLLRYVR 137 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG--ti~i~~~~r~~lI~ 137 (185)
+++.++.+++.|...|=+... -+..+.+.|.++.+
T Consensus 108 ~~~~~~~~~~~~~~vV~m~~~~~g~p~t~~~~~~~~~ 144 (252)
T cd00740 108 FLKVARLAKEHGAAVVVLAFDEQGQAKTRDKKVEIAE 144 (252)
T ss_pred cHHHHHHHHHhCCCEEEeccCCCCCCCCHHHHHHHHH
Confidence 778889999999999987752 23444444544443
No 135
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=77.41 E-value=14 Score=36.04 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=72.5
Q ss_pred hHHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 029925 41 NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (185)
Q Consensus 41 ~~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (185)
+-.+..++.|.+ -||.+.+....+-+ +-+++-|+.++++|..+... |+-- ...++.+-++.+.+.+.|.+
T Consensus 96 ~vv~~~v~~A~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~p---~~t~~~~~~~a~~l~~~Gad 169 (592)
T PRK09282 96 DVVEKFVEKAAENGIDIFRIFDALNDV---RNMEVAIKAAKKAGAHVQGTISYTTSP---VHTIEKYVELAKELEEMGCD 169 (592)
T ss_pred hhhHHHHHHHHHCCCCEEEEEEecChH---HHHHHHHHHHHHcCCEEEEEEEeccCC---CCCHHHHHHHHHHHHHcCCC
Confidence 345666666554 59999998766655 45999999999999977521 1100 12234666777788889999
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHC
Q 029925 117 TIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.|=|.|-.--+.+.+-.++|+.+++.
T Consensus 170 ~I~i~Dt~G~~~P~~~~~lv~~lk~~ 195 (592)
T PRK09282 170 SICIKDMAGLLTPYAAYELVKALKEE 195 (592)
T ss_pred EEEECCcCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999886
No 136
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=77.36 E-value=6 Score=36.37 Aligned_cols=46 Identities=17% Similarity=0.266 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc---ccCChhHH----HHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGS---LEIPEETL----LRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt---i~i~~~~r----~~lI~~~~~~Gf~v~ 147 (185)
...+.++.++++||+.||+.+.- ...+.+++ .++-+.+++.|++|.
T Consensus 33 ~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~v~ 85 (382)
T TIGR02631 33 DPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLKVP 85 (382)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCeEE
Confidence 67888999999999999998754 23443332 466677888999963
No 137
>PTZ00331 alpha/beta hydrolase; Provisional
Probab=77.33 E-value=7.4 Score=32.53 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=53.9
Q ss_pred HHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 77 KRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 77 ~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
++++++|| .++. |-..++|+.+- ...+.++||+.+=++|++-..+.+.....++.++..|-+|..
T Consensus 139 ~~L~~~gi~~lvi~G~~t~~CV~~T-------a~~a~~~g~~v~vv~Da~~~~~~~~~~~al~~~~~~g~~v~~ 205 (212)
T PTZ00331 139 QILKAHGVRRVFICGLAFDFCVLFT-------ALDAVKLGFKVVVLEDATRAVDPDAISKQRAELLEAGVILLT 205 (212)
T ss_pred HHHHHCCCCEEEEEEeccCHHHHHH-------HHHHHHCCCEEEEeCcCccCCCHHHHHHHHHHHHHCCCEEEe
Confidence 45678999 5555 76888888774 244678999999999999999999999999999999988753
No 138
>PRK04302 triosephosphate isomerase; Provisional
Probab=77.33 E-value=6.9 Score=32.79 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccccc
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
+.+.+.++++|.+.|-+-+.--.++.++-.++++.+++.|+.+..+++-
T Consensus 75 ~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~ 123 (223)
T PRK04302 75 HILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN 123 (223)
T ss_pred hhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3457778888888888887655677777778888888888887655554
No 139
>PRK05927 hypothetical protein; Provisional
Probab=77.26 E-value=33 Score=31.19 Aligned_cols=89 Identities=15% Similarity=0.236 Sum_probs=64.5
Q ss_pred eeCcccccCChhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHHcCCC-----EEEecCCcc---
Q 029925 59 FSGGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD-----TIELNVGSL--- 125 (185)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~-----~IEISdGti--- 125 (185)
|..|-..=.+-+.+.+-++..++. +|.+..=+-.|+++ .-| -..++.++.+|+.|.+ ..|+++-.+
T Consensus 98 i~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G-~~~~e~l~~Lk~aGl~~l~g~~~Et~~~~~~~~ 176 (350)
T PRK05927 98 LQGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSG-ISTEQALERLWDAGQRTIPGGGAEILSERVRKI 176 (350)
T ss_pred EeCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcC-CCHHHHHHHHHHcCcccCCCCCchhCCHHHhhc
Confidence 555655445667788888888864 46444224555442 223 4689999999999998 899998443
Q ss_pred ----cCChhHHHHHHHHHHHCCCeecc
Q 029925 126 ----EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.++.++|++.|+.|++.|+++.+
T Consensus 177 ~~p~k~~~~~rl~~i~~A~~lGi~~~s 203 (350)
T PRK05927 177 ISPKKMGPDGWIQFHKLAHRLGFRSTA 203 (350)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCcCc
Confidence 56779999999999999999943
No 140
>PRK15452 putative protease; Provisional
Probab=77.22 E-value=12 Score=35.41 Aligned_cols=78 Identities=9% Similarity=-0.031 Sum_probs=53.5
Q ss_pred chhHHHHHHHhhcccccEEeeeCccc------ccCChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSH------SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs------~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~ 110 (185)
.+..++..++.- .|-|=+|.... ..+..+.|++-++++|++|+++|.- ++..-- ... .+.+|++.+
T Consensus 12 ~~e~l~aAi~~G---ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~-el~--~~~~~l~~l 85 (443)
T PRK15452 12 TLKNMRYAFAYG---ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNA-KLK--TFIRDLEPV 85 (443)
T ss_pred CHHHHHHHHHCC---CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHH-HHH--HHHHHHHHH
Confidence 556677666654 45555544322 2334466999999999999988864 333211 112 678889999
Q ss_pred HHcCCCEEEecC
Q 029925 111 KQVGFDTIELNV 122 (185)
Q Consensus 111 k~lGF~~IEISd 122 (185)
.++|+|+|=|+|
T Consensus 86 ~~~gvDgvIV~d 97 (443)
T PRK15452 86 IAMKPDALIMSD 97 (443)
T ss_pred HhCCCCEEEEcC
Confidence 999999999997
No 141
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=77.04 E-value=17 Score=33.55 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=78.9
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeC---c-ccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSG---G-SHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN- 98 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~---G-Ts~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q- 98 (185)
|..++=|-+..-.+..++++++....+.. +.+ . |.-..|..+-.++++.++++|| .++.| ++-+..+..
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~---~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~~~~~L~~l 170 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLG---VDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSFHDSELHAL 170 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCC---CCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHh
Confidence 44555554332267888999998876553 222 1 2224466666899999999999 77778 664444422
Q ss_pred CC----chHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 99 GP----SAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 99 g~----~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
|+ +.+.+-++.|++.||+.| -+--|.=.-+.++..+-++.+.+.|..-
T Consensus 171 ~R~~~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~~l~~~~ 224 (430)
T PRK08208 171 HRPQKRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQALVYRPEE 224 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHhCCCCE
Confidence 21 245667788899999875 5566766777788888899998887653
No 142
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=76.98 E-value=25 Score=29.98 Aligned_cols=96 Identities=17% Similarity=0.101 Sum_probs=65.2
Q ss_pred hhHHHHHHHhhcccccEE------------eeeCcccccCChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHH
Q 029925 40 HNVLEDIFESMGQFVDGL------------KFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFK 104 (185)
Q Consensus 40 ~~~~eDlLe~ag~yID~l------------Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~ 104 (185)
+..+....+...++.|+| |-|.|...+.+.+.+.+.++-.++.+++|+. . +|- . ...
T Consensus 84 ~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~------~--~~~ 155 (233)
T cd02911 84 LEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD------V--DDE 155 (233)
T ss_pred HHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC------c--CHH
Confidence 445555555544455555 4467888888899999999999999887775 2 332 1 455
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+..+.+.+.|.+.|-++.+.-. ...+ .++|++++ ....|
T Consensus 156 ~la~~l~~aG~d~ihv~~~~~g-~~ad-~~~I~~i~-~~ipV 194 (233)
T cd02911 156 ELARLIEKAGADIIHVDAMDPG-NHAD-LKKIRDIS-TELFI 194 (233)
T ss_pred HHHHHHHHhCCCEEEECcCCCC-CCCc-HHHHHHhc-CCCEE
Confidence 6778889999999999876543 2223 37788776 33433
No 143
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=76.97 E-value=7.1 Score=35.63 Aligned_cols=92 Identities=12% Similarity=0.143 Sum_probs=61.2
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCcc-----
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGti----- 125 (185)
.-|+-|=||+||..+++.+.|++.++.++++= ++.+. .|+.+.-+|+. -++.++.++++||+.|.|---|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~-~~~~~--~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L 148 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALL-PLDPD--AEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL 148 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhC-CCCCC--CeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH
Confidence 45888999999999999999999999887651 11111 13333333322 24788899999999888755444
Q ss_pred -----cCChhHHHHHHHHHHHCCCee
Q 029925 126 -----EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.-+.++-.+.|+.+++.+..|
T Consensus 149 ~~l~R~~~~~~~~~~i~~~~~~~~~v 174 (394)
T PRK08898 149 KALGRIHDGAEARAAIEIAAKHFDNF 174 (394)
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCCce
Confidence 123345556777777765545
No 144
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=76.86 E-value=4.9 Score=32.64 Aligned_cols=69 Identities=22% Similarity=0.225 Sum_probs=43.0
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
.++.+.+.-+++|=+- ...+...+.+-++.++++|+++.++ ..++....+-.+.+.++|.+.|-+.
T Consensus 68 ~~~~~~~~Gad~i~vh-------~~~~~~~~~~~i~~~~~~g~~~~~~-------~~~~~t~~~~~~~~~~~g~d~v~~~ 133 (206)
T TIGR03128 68 EAEQAFAAGADIVTVL-------GVADDATIKGAVKAAKKHGKEVQVD-------LINVKDKVKRAKELKELGADYIGVH 133 (206)
T ss_pred HHHHHHHcCCCEEEEe-------ccCCHHHHHHHHHHHHHcCCEEEEE-------ecCCCChHHHHHHHHHcCCCEEEEc
Confidence 3666666666655433 1234445889999999999988652 0011123334445677899999887
Q ss_pred CCc
Q 029925 122 VGS 124 (185)
Q Consensus 122 dGt 124 (185)
.|+
T Consensus 134 pg~ 136 (206)
T TIGR03128 134 TGL 136 (206)
T ss_pred CCc
Confidence 664
No 145
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=76.49 E-value=30 Score=29.06 Aligned_cols=82 Identities=11% Similarity=0.249 Sum_probs=53.9
Q ss_pred HHHHHhhccc-ccEEeeeCccccc-----CChhHHHHHHHHHHhCCceecC-ccHH-------HHHHHhCCchHHHHHHH
Q 029925 44 EDIFESMGQF-VDGLKFSGGSHSL-----MPKPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVED 109 (185)
Q Consensus 44 eDlLe~ag~y-ID~lKfg~GTs~l-----~p~~~L~eKI~l~~~~gV~v~~-Gtlf-------E~al~qg~~~~~~yl~~ 109 (185)
++.++.+.++ +|.+-|-.+.... ++.+.+++--++++++||.++. +.+. +....+.-+.+.+.++.
T Consensus 13 ~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~ 92 (273)
T smart00518 13 YKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR 92 (273)
T ss_pred hHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556666666 7777766555533 3445688888889999997765 4321 11111111257888899
Q ss_pred HHHcCCCEEEecCCcc
Q 029925 110 CKQVGFDTIELNVGSL 125 (185)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (185)
|+++|.+.|=+--|+.
T Consensus 93 A~~lGa~~vv~h~g~~ 108 (273)
T smart00518 93 CEELGIKALVFHPGSY 108 (273)
T ss_pred HHHcCCCEEEEccccc
Confidence 9999999988877765
No 146
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=76.32 E-value=6.4 Score=33.48 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 71 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
.-.+-++.++++||++.|| |--|+.- +.++|.+.|-+==
T Consensus 89 ~~~~v~~~~~~~~i~~iPG~~TptEi~~-------------A~~~Ga~~vKlFP 129 (204)
T TIGR01182 89 LTPELAKHAQDHGIPIIPGVATPSEIML-------------ALELGITALKLFP 129 (204)
T ss_pred CCHHHHHHHHHcCCcEECCCCCHHHHHH-------------HHHCCCCEEEECC
Confidence 4668889999999999999 8888865 4468888887754
No 147
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=76.14 E-value=3.6 Score=34.94 Aligned_cols=40 Identities=18% Similarity=0.274 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
..-.+.++.++++||.+.|| |--|+.- +.++|++.|-+==
T Consensus 84 ~~~~~vi~~a~~~~i~~iPG~~TptEi~~-------------A~~~Ga~~vK~FP 125 (201)
T PRK06015 84 GTTQELLAAANDSDVPLLPGAATPSEVMA-------------LREEGYTVLKFFP 125 (201)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-------------HHHCCCCEEEECC
Confidence 45677889999999999999 8999875 4468888887754
No 148
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=76.07 E-value=7.8 Score=31.06 Aligned_cols=80 Identities=19% Similarity=0.181 Sum_probs=0.0
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEeeeCcccccCC-----hhHHHHHHHHHHhCCceecCccHHHHH
Q 029925 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-----KPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (185)
Q Consensus 22 R~~GlTmV~Dk-G~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p-----~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (185)
|..|....+|- |. +...++-+.+.. +|+||+...-..-+. ...++.-+.+++.+|+.+.-.+-
T Consensus 142 ~~~G~~l~ld~~g~----~~~~~~~l~~~~---~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gV---- 210 (240)
T cd01948 142 RALGVRIALDDFGT----GYSSLSYLKRLP---VDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVVAEGV---- 210 (240)
T ss_pred HHCCCeEEEeCCCC----cHhhHHHHHhCC---CCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEEEEec----
Q ss_pred HHhCCchHHHHHHHHHHcCCCEE
Q 029925 96 IRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~I 118 (185)
.-.+-++.++++|++.+
T Consensus 211 ------e~~~~~~~~~~~gi~~~ 227 (240)
T cd01948 211 ------ETEEQLELLRELGCDYV 227 (240)
T ss_pred ------CCHHHHHHHHHcCCCee
No 149
>PHA02754 hypothetical protein; Provisional
Probab=75.90 E-value=2 Score=30.52 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=18.3
Q ss_pred hhHHHHHHHhhcccccEEee
Q 029925 40 HNVLEDIFESMGQFVDGLKF 59 (185)
Q Consensus 40 ~~~~eDlLe~ag~yID~lKf 59 (185)
.++++|+|+.+|-|||-+|.
T Consensus 20 MRelkD~LSe~GiYi~RIka 39 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKA 39 (67)
T ss_pred HHHHHHHHhhCceEEEEEEE
Confidence 46899999999999999985
No 150
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=75.90 E-value=10 Score=37.67 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=48.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+++-.++-|+.+|++||.+. +|+--+.|..- ++++|++.+ .-.+.+++|.++|+..++.|-.
T Consensus 447 ~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~i-----------A~~lGI~~v-----~a~~~PedK~~~v~~lq~~g~~ 510 (675)
T TIGR01497 447 VKGGIKERFAQLRKMGIKTIMITGDNRLTAAAI-----------AAEAGVDDF-----IAEATPEDKIALIRQEQAEGKL 510 (675)
T ss_pred chhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH-----------HHHcCCCEE-----EcCCCHHHHHHHHHHHHHcCCe
Confidence 45558899999999999654 57655555433 788898754 3468899999999999999876
Q ss_pred e
Q 029925 146 A 146 (185)
Q Consensus 146 v 146 (185)
|
T Consensus 511 V 511 (675)
T TIGR01497 511 V 511 (675)
T ss_pred E
Confidence 5
No 151
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=75.81 E-value=41 Score=29.31 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=67.3
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCcc----HHHHHHHh--CC----------chHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRN--GP----------SAFK 104 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al~q--g~----------~~~~ 104 (185)
..+.+++.-+++|| +|.+++.--..+.+..-|+..++. +++++-.| -+|.|+.. |. .+.+
T Consensus 30 ~A~~~~~~GAdiID---Vg~~~~~~eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsIs~~~~~~~ 106 (261)
T PRK07535 30 LALKQAEAGADYLD---VNAGTAVEEEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSVSAEGEKLE 106 (261)
T ss_pred HHHHHHHCCCCEEE---ECCCCCchhHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeCCCCCccCH
Confidence 44555566666666 688876544445677788877664 89888753 68888875 32 2367
Q ss_pred HHHHHHHHcCCCEEEecCCcccCC--h----hHHHHHHHHHHHCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIP--E----ETLLRYVRLVKSAGL 144 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~--~----~~r~~lI~~~~~~Gf 144 (185)
+.+..+++.|...|=+-...-.+| . +...++++++.+.|+
T Consensus 107 ~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI 152 (261)
T PRK07535 107 VVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGI 152 (261)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 889999999999996543222234 2 334456778899999
No 152
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=75.76 E-value=11 Score=32.10 Aligned_cols=68 Identities=22% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC-CCeeccccccccCCCCCCCccccccccccccCCCCc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~-Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~~~~~~ 178 (185)
+++..+.+.+.|.|+|+|+ ||..+..+.-.++++.+|+. .+-|.-|.|-- ..+.-++| ||..||==||
T Consensus 13 ~~~ia~~v~~~gtDaI~VG-GS~gvt~~~~~~~v~~ik~~~~lPvilfp~~~---~~i~~~aD----~~~~~sllns 81 (205)
T TIGR01769 13 IEKIAKNAKDAGTDAIMVG-GSLGIVESNLDQTVKKIKKITNLPVILFPGNV---NGLSRYAD----AVFFMSLLNS 81 (205)
T ss_pred HHHHHHHHHhcCCCEEEEc-CcCCCCHHHHHHHHHHHHhhcCCCEEEECCCc---cccCcCCC----EEEEEEeecC
Confidence 4555668999999999997 66778889999999999985 46666664432 23333444 6777764443
No 153
>PRK00915 2-isopropylmalate synthase; Validated
Probab=75.55 E-value=5.5 Score=37.95 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=66.8
Q ss_pred ccEEeeeCcccccCChh-----------HHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
++.+-+...+|-++-+. .+++-|+.++++|..|..+ .|.+..-+++.+-++++.+.+.|.+.|-+.|
T Consensus 93 ~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~--~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 170 (513)
T PRK00915 93 APRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFS--AEDATRTDLDFLCRVVEAAIDAGATTINIPD 170 (513)
T ss_pred CCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEE--eCCCCCCCHHHHHHHHHHHHHcCCCEEEEcc
Confidence 45566666666554322 2478899999999988765 2233334455788888899999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 029925 123 GSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (185)
-.--+.+++-.++|+.+++.
T Consensus 171 TvG~~~P~~~~~~i~~l~~~ 190 (513)
T PRK00915 171 TVGYTTPEEFGELIKTLRER 190 (513)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 154
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=75.47 E-value=16 Score=31.24 Aligned_cols=79 Identities=8% Similarity=0.071 Sum_probs=50.0
Q ss_pred hHHHHHHHhhccc-ccEEeeeCcccc-------cCChhHHHHHHHHHHhC-CceecC--ccHHHHHHHhCCchHHHHHHH
Q 029925 41 NVLEDIFESMGQF-VDGLKFSGGSHS-------LMPKPFIEEVVKRAHQH-DVYVST--GDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 41 ~~~eDlLe~ag~y-ID~lKfg~GTs~-------l~p~~~L~eKI~l~~~~-gV~v~~--GtlfE~al~qg~~~~~~yl~~ 109 (185)
..+.+..+.+-++ +|.|=+-+++-. +...+.+.+.++-.++. ++++.- ++.. ..+.+.+..+.
T Consensus 111 ~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~------~~~~~~~~a~~ 184 (289)
T cd02810 111 EDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF------DLEDIVELAKA 184 (289)
T ss_pred HHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC------CHHHHHHHHHH
Confidence 4444555555555 777777666533 23445677888877776 544443 2211 11256777888
Q ss_pred HHHcCCCEEEecCCcc
Q 029925 110 CKQVGFDTIELNVGSL 125 (185)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (185)
+.+.|.|.|.+++++.
T Consensus 185 l~~~Gad~i~~~~~~~ 200 (289)
T cd02810 185 AERAGADGLTAINTIS 200 (289)
T ss_pred HHHcCCCEEEEEcccC
Confidence 9999999999998764
No 155
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=75.33 E-value=29 Score=29.14 Aligned_cols=76 Identities=17% Similarity=0.222 Sum_probs=50.9
Q ss_pred HHHHHHHHHhCCceec----C-ccHHH------------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH-
Q 029925 72 IEEVVKRAHQHDVYVS----T-GDWAE------------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET- 131 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~----~-GtlfE------------~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~- 131 (185)
+++.-+++.++|+.++ | |+|.. .... . .+++.++.|+++|.+.|-+--|... .+.++
T Consensus 42 ~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~a~~lga~~i~~~~g~~~~~~~~~~~ 118 (258)
T PRK09997 42 IEELKQVLASNKLEHTLHNLPAGDWAAGERGIACIPGREEEFR-D--GVAAAIRYARALGNKKINCLVGKTPAGFSSEQI 118 (258)
T ss_pred HHHHHHHHHHcCCcEEEEcCCCCccccCcCccccCCCcHHHHH-H--HHHHHHHHHHHhCCCEEEECCCCCCCCCCHHHH
Confidence 7777788889999875 2 44431 1112 2 6889999999999999988666542 22222
Q ss_pred H-------HHHHHHHHHCCCeecccc
Q 029925 132 L-------LRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 132 r-------~~lI~~~~~~Gf~v~~E~ 150 (185)
+ .++.+.+++.|+++--|-
T Consensus 119 ~~~~~~~l~~l~~~a~~~Gv~l~lE~ 144 (258)
T PRK09997 119 HATLVENLRYAANMLMKEDILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 2 344566778888876663
No 156
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=74.90 E-value=32 Score=29.85 Aligned_cols=74 Identities=18% Similarity=0.195 Sum_probs=53.4
Q ss_pred HHHHHHHHHhC-CceecCcc----HHHHHHHhCCch--------HHHHHHHHHHcCCCEEEecCCcccCC----------
Q 029925 72 IEEVVKRAHQH-DVYVSTGD----WAEHLIRNGPSA--------FKEYVEDCKQVGFDTIELNVGSLEIP---------- 128 (185)
Q Consensus 72 L~eKI~l~~~~-gV~v~~Gt----lfE~al~qg~~~--------~~~yl~~~k~lGF~~IEISdGti~i~---------- 128 (185)
|+..|+.+++. +++++--| -+|.|+..|.+- .++.+..+++.|..+|=+.+.-+.-+
T Consensus 63 l~~~v~~~~~~~~~plsiDT~~~~vi~~al~~G~~iINsis~~~~~~~~~l~~~~~~~vV~m~~~g~p~~~~~~~~~~~~ 142 (257)
T TIGR01496 63 VVPVIKALRDQPDVPISVDTYRAEVARAALEAGADIINDVSGGQDPAMLEVAAEYGVPLVLMHMRGTPRTMQENPHYEDV 142 (257)
T ss_pred HHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCCCchhHHHHHHcCCcEEEEeCCCCCcccccCCCcccH
Confidence 88888999887 99998643 788888776421 45689999999999998876433222
Q ss_pred hhH----HHHHHHHHHHCCCe
Q 029925 129 EET----LLRYVRLVKSAGLK 145 (185)
Q Consensus 129 ~~~----r~~lI~~~~~~Gf~ 145 (185)
.++ ..+.|+++.+.|++
T Consensus 143 ~~~~~~~~~~~i~~~~~~Gi~ 163 (257)
T TIGR01496 143 VEEVLRFLEARAEELVAAGVA 163 (257)
T ss_pred HHHHHHHHHHHHHHHHHcCCC
Confidence 122 34667778999984
No 157
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=74.61 E-value=20 Score=29.81 Aligned_cols=77 Identities=14% Similarity=0.127 Sum_probs=52.7
Q ss_pred HHHHHHHHHhCCceecC-c----cHHH-----------HHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH--
Q 029925 72 IEEVVKRAHQHDVYVST-G----DWAE-----------HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET-- 131 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~~-G----tlfE-----------~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~-- 131 (185)
+.+--++++++|+.+.. + .|.. ..-.. +.+++.++.|+++|...|-+-.|... .+.++
T Consensus 41 ~~~l~~~l~~~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~a~~lg~~~i~~~~g~~~~~~~~~~~~ 118 (254)
T TIGR03234 41 AEALKARLAAAGLEQVLFNLPAGDWAAGERGIACLPGREEEFR--EGVALAIAYARALGCPQVNCLAGKRPAGVSPEEAR 118 (254)
T ss_pred HHHHHHHHHHcCCeEEEEeCCCCccccCCCccccCCccHHHHH--HHHHHHHHHHHHhCCCEEEECcCCCCCCCCHHHHH
Confidence 77778899999998763 2 1210 00011 26888999999999999998888653 22222
Q ss_pred ------HHHHHHHHHHCCCeecccc
Q 029925 132 ------LLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 132 ------r~~lI~~~~~~Gf~v~~E~ 150 (185)
..++.+.|++.|.++..|-
T Consensus 119 ~~~~~~l~~l~~~A~~~gi~l~lE~ 143 (254)
T TIGR03234 119 ATLVENLRYAADALDRIGLTLLIEP 143 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3466777888999887774
No 158
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=74.46 E-value=19 Score=30.16 Aligned_cols=82 Identities=18% Similarity=0.122 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHHhCCceecC---ccH--H------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--cC-Ch-----
Q 029925 69 KPFIEEVVKRAHQHDVYVST---GDW--A------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--EI-PE----- 129 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~---Gtl--f------E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--~i-~~----- 129 (185)
...+++--+.++++||.++. ++. + +....+.-+.+++.++.|+.||.+.|=+..+.. .- +.
T Consensus 51 ~~~~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~ 130 (284)
T PRK13210 51 KEERLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQR 130 (284)
T ss_pred HHHHHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHH
Confidence 34578888899999997752 210 1 111111112688999999999999998753321 11 11
Q ss_pred --hHHHHHHHHHHHCCCeecccc
Q 029925 130 --ETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 130 --~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+...++.+.+++.|+++..|-
T Consensus 131 ~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 131 FIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEe
Confidence 224567788888999886665
No 159
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.43 E-value=8.1 Score=37.51 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=39.4
Q ss_pred HHHHHHHHHHcCCCEEEecCC----------c-----ccC-----ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVG----------S-----LEI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG----------t-----i~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
.++.++++++||+++||++== . ..+ +.++..++|+.+.++|++|+-.+=..+..
T Consensus 173 ~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~V~nH~~ 246 (633)
T PRK12313 173 ADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFAPTSRYGTPEDFMYLVDALHQNGIGVILDWVPGHFP 246 (633)
T ss_pred HHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCcCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCC
Confidence 455678999999999998531 1 111 25688899999999999997665544443
No 160
>PRK07360 FO synthase subunit 2; Reviewed
Probab=74.39 E-value=46 Score=30.20 Aligned_cols=94 Identities=17% Similarity=0.294 Sum_probs=62.0
Q ss_pred ccEEeeeCcccccCC-hhHHHHHHHHHHhC--CceecCccHHHHHH---HhCCchHHHHHHHHHHcCCCEE-EecCC---
Q 029925 54 VDGLKFSGGSHSLMP-KPFIEEVVKRAHQH--DVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFDTI-ELNVG--- 123 (185)
Q Consensus 54 ID~lKfg~GTs~l~p-~~~L~eKI~l~~~~--gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~~I-EISdG--- 123 (185)
+.-+=+-.|...-.+ -+.+.+.++..++. +|.++.=+..|+.+ ..| ...++.++.+|+.|.+.+ |-|.-
T Consensus 108 ~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G-~~~~e~l~~LkeAGld~~~~t~~e~l~ 186 (371)
T PRK07360 108 ATEVCIQGGLHPAADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDG-LSYEEVLKALKDAGLDSMPGTAAEILV 186 (371)
T ss_pred CCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcC-CCHHHHHHHHHHcCCCcCCCcchhhcc
Confidence 566666666544443 45677888888874 35444325555544 223 346788999999999988 33321
Q ss_pred -------cc-cCChhHHHHHHHHHHHCCCeecc
Q 029925 124 -------SL-EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 124 -------ti-~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+- ..+.++|.+.++.+++.|+++.+
T Consensus 187 ~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~s 219 (371)
T PRK07360 187 DEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTS 219 (371)
T ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHcCCCcee
Confidence 11 35778999999999999999843
No 161
>PRK02227 hypothetical protein; Provisional
Probab=74.32 E-value=17 Score=31.89 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=69.7
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCC--hhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMP--KPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p--~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (185)
......+..+..=+||+|.|.--..-.+ -+.++..+...+.+ +..+..-.+.+.--...+ .-.+-.+.+++.||+
T Consensus 68 ~~~~aa~~~a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~-~~~~l~~~a~~aGf~ 146 (238)
T PRK02227 68 TISLAALGAAATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSV-SPLSLPAIAADAGFD 146 (238)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCC-ChHHHHHHHHHcCCC
Confidence 3667788888888999999952111111 12234444444444 445555566664322221 234677889999999
Q ss_pred EEEecCC-------cccCChhHHHHHHHHHHHCCCee
Q 029925 117 TIELNVG-------SLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 117 ~IEISdG-------ti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+=|... +--|+.++..++++++++.|+..
T Consensus 147 g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~ 183 (238)
T PRK02227 147 GAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGLMS 183 (238)
T ss_pred EEEEecccCCCcchHhhCCHHHHHHHHHHHHHcccHh
Confidence 9998653 23699999999999999999987
No 162
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=74.32 E-value=18 Score=31.71 Aligned_cols=94 Identities=12% Similarity=0.129 Sum_probs=60.5
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhH---HHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHH-HcCC
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPF---IEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCK-QVGF 115 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~---L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k-~lGF 115 (185)
++...+++..++|+..+|+|+.-..-+..+. |++.++.++++|.+|..- =+..+- +-+..|.+..- .+|+
T Consensus 41 ~f~~~ii~~l~~~v~~vK~g~~lf~~~G~~gi~~l~~~~~~~~~~g~~VilD~K~~DIp-----nTv~~~a~a~~~~~g~ 115 (261)
T TIGR02127 41 AFCLRIIDATAEYAAVVKPQVAFFERFGSEGFKALEEVIAHARSLGLPVLADVKRGDIG-----STASAYAKAWLGHLHA 115 (261)
T ss_pred HHHHHHHHhcCCcceEEecCHHHHHhcCHHHHHHHHHHHHHHHHCCCeEEEEeeccChH-----HHHHHHHHHHHhhcCC
Confidence 3457899999999999999997655554433 677779999999887653 233332 12334444444 6777
Q ss_pred CEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 116 DTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 116 ~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|+|-|+- -+..+....+++.+.+.
T Consensus 116 D~vTvh~---~~G~d~l~~~~~~~~~~ 139 (261)
T TIGR02127 116 DALTVSP---YLGLDSLRPFLEYARAN 139 (261)
T ss_pred CEEEECC---cCCHHHHHHHHHHHhhc
Confidence 7777773 44445555555554443
No 163
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=74.18 E-value=11 Score=31.87 Aligned_cols=94 Identities=9% Similarity=-0.046 Sum_probs=52.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHH-HHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE-DCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~-~~k~lGF~~ 117 (185)
......++++...+++|++|+|+--..-+..+.+++.-+++. |.++..- .-+. + +..|+. .+.+.|.+.
T Consensus 14 ~~~~a~~l~~~l~~~v~~~kvG~~l~~~~G~~~i~~lk~~~~--~~~v~~D----LK~~-D---i~~~v~~~~~~~Gad~ 83 (216)
T PRK13306 14 DLESAIEDAKKVAEEVDIIEVGTILLLAEGMKAVRVLRALYP--DKIIVAD----TKIA-D---AGKILAKMAFEAGADW 83 (216)
T ss_pred CHHHHHHHHHHccccCCEEEEChHHHHHhCHHHHHHHHHHCC--CCEEEEE----Eeec-C---CcHHHHHHHHHCCCCE
Confidence 566788899999999999999987666555555554444321 3222211 0000 0 111211 255666777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+-|.--+ +.+.-.+.++.+++.|.+
T Consensus 84 vTvH~~a---~~~~i~~~~~~~~~~g~~ 108 (216)
T PRK13306 84 VTVICAA---HIPTIKAALKVAKEFNGE 108 (216)
T ss_pred EEEeCCC---CHHHHHHHHHHHHHcCCE
Confidence 6666422 444455566655555543
No 164
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=74.01 E-value=9.9 Score=32.33 Aligned_cols=116 Identities=16% Similarity=0.139 Sum_probs=74.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCce----ecCc-----cHHHHH
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY----VSTG-----DWAEHL 95 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~----v~~G-----tlfE~a 95 (185)
++....|=|+ + .+..++.+|+.-.+ |.+.||+++.+.+.+++-++.+.+. |. +.-| ||-+
T Consensus 75 ~~pv~vgGGi--r-s~edv~~~l~~Ga~-----kvviGs~~l~~p~l~~~i~~~~~~~-i~vsld~~~~~v~~~Gw~~-- 143 (241)
T PRK14024 75 DVKVELSGGI--R-DDESLEAALATGCA-----RVNIGTAALENPEWCARVIAEHGDR-VAVGLDVRGHTLAARGWTR-- 143 (241)
T ss_pred CCCEEEcCCC--C-CHHHHHHHHHCCCC-----EEEECchHhCCHHHHHHHHHHhhhh-EEEEEEEeccEeccCCeee--
Confidence 4555666665 4 66677777775444 7899999999999999999888654 32 2112 4543
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHC-CCeeccccccccC
Q 029925 96 IRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA-GLKAKPKFAVMFN 155 (185)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~-Gf~v~~E~G~k~~ 155 (185)
... ...++.+.+.++|++.|=+-+=+-+ ..-.+ .++|+++++. .+.|+..=|+...
T Consensus 144 -~~~--~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d-~~~i~~i~~~~~ipviasGGi~s~ 202 (241)
T PRK14024 144 -DGG--DLWEVLERLDSAGCSRYVVTDVTKDGTLTGPN-LELLREVCARTDAPVVASGGVSSL 202 (241)
T ss_pred -cCc--cHHHHHHHHHhcCCCEEEEEeecCCCCccCCC-HHHHHHHHhhCCCCEEEeCCCCCH
Confidence 222 6788999999999998877543321 11113 4666766664 5566555444433
No 165
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=74.00 E-value=14 Score=34.50 Aligned_cols=97 Identities=6% Similarity=0.015 Sum_probs=58.4
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHH-HHHHHHcCCC
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEY-VEDCKQVGFD 116 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~y-l~~~k~lGF~ 116 (185)
.+.....+++..+++ ++++|+|+--..-+..+.+++.-+...+ ..+..- .. .. ....| .+.+.+.|.+
T Consensus 183 ~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~G~~iVk~Lr~~~~~--~~I~~D----LK-~~---Di~~~vv~~~a~aGAD 252 (391)
T PRK13307 183 DLEEVERVLSQLPKSDHIIIEAGTPLIKKFGLEVISKIREVRPD--AFIVAD----LK-TL---DTGNLEARMAADATAD 252 (391)
T ss_pred CHHHHHHHHHhcccccceEEEECHHHHHHhCHHHHHHHHHhCCC--CeEEEE----ec-cc---ChhhHHHHHHHhcCCC
Confidence 677888999999999 9999999866666655555554443211 112111 00 00 12233 5556677777
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.+-|.-- -+.+.-.+.++.+++.|.++..
T Consensus 253 ~vTVH~e---a~~~ti~~ai~~akk~GikvgV 281 (391)
T PRK13307 253 AVVISGL---APISTIEKAIHEAQKTGIYSIL 281 (391)
T ss_pred EEEEecc---CCHHHHHHHHHHHHHcCCEEEE
Confidence 7777742 2344556677777777776644
No 166
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=73.71 E-value=23 Score=33.71 Aligned_cols=119 Identities=17% Similarity=0.153 Sum_probs=75.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc-cEEeeeCcccc-cCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV-DGLKFSGGSHS-LMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G- 99 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yI-D~lKfg~GTs~-l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g- 99 (185)
|..+.=|-+..-....++++++..-..+ +.-.+.-=|.- .-|..+-.++++.++++|| .++.| ++=+..+.. |
T Consensus 221 tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR 300 (488)
T PRK08207 221 TIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQTMNDETLKAIGR 300 (488)
T ss_pred EEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCC
Confidence 4555555333225788999999876654 32111111111 2455667899999999999 56667 555444422 2
Q ss_pred ---CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 100 ---PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 100 ---~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+.+-++.+++.||+.| -+--|.-.-+.++..+-++.+.+.+..
T Consensus 301 ~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd 351 (488)
T PRK08207 301 HHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPE 351 (488)
T ss_pred CCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcC
Confidence 1346666788899999754 455666667788888888888887764
No 167
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=73.66 E-value=9 Score=37.21 Aligned_cols=53 Identities=17% Similarity=0.234 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEecCCc----------c-----cC-----ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 104 KEYVEDCKQVGFDTIELNVGS----------L-----EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGt----------i-----~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
++.++++++||+++||++-=+ - .+ +.++..++|+.+.++|++|+-.+=..+..
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~V~NH~~ 232 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDWVPGHFP 232 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEecccCcC
Confidence 344588899999999995311 1 11 25688899999999999997766554443
No 168
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=73.65 E-value=9.3 Score=34.26 Aligned_cols=66 Identities=23% Similarity=0.362 Sum_probs=38.2
Q ss_pred ccccEEeeeCcccccCChhHHHHHHHHHHhCCceec-----C-c---cHHHHHHHhCCc----hHHHHHHHHHHcCCCEE
Q 029925 52 QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS-----T-G---DWAEHLIRNGPS----AFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 52 ~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~-----~-G---tlfE~al~qg~~----~~~~yl~~~k~lGF~~I 118 (185)
+|||..=. |.-..+..+ =-.=|+.||+|||+|. . + .|++.++.+..+ -+++.++.|+-+|||..
T Consensus 27 ~yiD~fvy-wsh~~i~iP--~~~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw 103 (311)
T PF03644_consen 27 QYIDIFVY-WSHGLITIP--PAGWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGW 103 (311)
T ss_dssp GG-SEEEE-T-TBSSE-----HHHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EE
T ss_pred cceeeEee-cccccccCC--CchhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCce
Confidence 68887533 544444422 2356799999999986 2 2 388999884322 27899999999999975
Q ss_pred Ee
Q 029925 119 EL 120 (185)
Q Consensus 119 EI 120 (185)
=|
T Consensus 104 ~i 105 (311)
T PF03644_consen 104 LI 105 (311)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 169
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=73.62 E-value=24 Score=31.97 Aligned_cols=114 Identities=13% Similarity=0.230 Sum_probs=77.8
Q ss_pred eEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C----
Q 029925 28 EMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G---- 99 (185)
Q Consensus 28 mV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g---- 99 (185)
.-+.-|-|..-.+..++.+++..... +..-+.+ -.-|..+-.++++.++++|| .++.| ++-+..+.. |
T Consensus 62 iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~---E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~~~ 137 (370)
T PRK06294 62 VFFGGGTPSLVPPALIQDILKTLEAP-HATEITL---EANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRTHS 137 (370)
T ss_pred EEECCCccccCCHHHHHHHHHHHHhC-CCCeEEE---EeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCCCC
Confidence 33454543333677889998887554 3344544 34566666899999999999 78888 677766643 2
Q ss_pred CchHHHHHHHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 100 PSAFKEYVEDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+.+-++.+++.||+.| -+--|.=.=+.+++.+-++.+.+.+..
T Consensus 138 ~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~~l~~~ 185 (370)
T PRK06294 138 SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAITLPIT 185 (370)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHHccCCC
Confidence 1246667778899999854 445665566777788888888887753
No 170
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=73.60 E-value=8.8 Score=36.88 Aligned_cols=87 Identities=10% Similarity=0.007 Sum_probs=67.3
Q ss_pred ccEEeeeCcccccCChh-----------HHHHHHHHHHhCCce-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 54 VDGLKFSGGSHSLMPKP-----------FIEEVVKRAHQHDVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~-----------~L~eKI~l~~~~gV~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
+|.+-+-..+|-++-+. .+.+-|+.++++|.. |..|. |.+-.-+++.+.++++.+.+.|.+.|-|.
T Consensus 182 ~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~--EDa~Rtd~efl~~~~~~a~~~Gad~I~l~ 259 (503)
T PLN03228 182 RPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGC--EDGGRSDKEFLCKILGEAIKAGATSVGIA 259 (503)
T ss_pred CCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEecc--ccccccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 35666777777665332 247788999999984 55553 44444555577889999999999999999
Q ss_pred CCcccCChhHHHHHHHHHHHC
Q 029925 122 VGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 122 dGti~i~~~~r~~lI~~~~~~ 142 (185)
|-.--+.+.+-.++|+.+++.
T Consensus 260 DTvG~~tP~~v~~lV~~l~~~ 280 (503)
T PLN03228 260 DTVGINMPHEFGELVTYVKAN 280 (503)
T ss_pred cCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999875
No 171
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=73.55 E-value=21 Score=34.89 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=70.9
Q ss_pred HHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 42 VLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 42 ~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
-.+..++.|.+ -||.+-+....+-+ +-+++-|+.++++|..+... .+.- +=...++.+-++.+.+.+.|.+.|-
T Consensus 92 vv~~~v~~a~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~-~p~~~~~~~~~~~~~~~~~Gad~I~ 167 (582)
T TIGR01108 92 VVERFVKKAVENGMDVFRIFDALNDP---RNLQAAIQAAKKHGAHAQGTISYTT-SPVHTLETYLDLAEELLEMGVDSIC 167 (582)
T ss_pred hHHHHHHHHHHCCCCEEEEEEecCcH---HHHHHHHHHHHHcCCEEEEEEEecc-CCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 35555665444 49998888655443 45999999999999877643 1100 1012224667777778889999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHC
Q 029925 120 LNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|.|-.--+.+.+-.++|+.+++.
T Consensus 168 i~Dt~G~~~P~~v~~lv~~lk~~ 190 (582)
T TIGR01108 168 IKDMAGILTPKAAYELVSALKKR 190 (582)
T ss_pred ECCCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 172
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=73.27 E-value=8.9 Score=35.80 Aligned_cols=54 Identities=15% Similarity=0.262 Sum_probs=39.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----------------ChhHHHHHHHHHHHCCCeecccccc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----------------PEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----------------~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
+.+=++++++|||++|.||==+- +. +.++..+||+.+.++|++|.-.+=.
T Consensus 24 I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~Gi~vi~D~V~ 103 (479)
T PRK09441 24 LAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKGTVRTKYGTKEELLNAIDALHENGIKVYADVVL 103 (479)
T ss_pred HHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccCCcCcCcCCHHHHHHHHHHHHHCCCEEEEEECc
Confidence 44457788899999998864221 11 3678999999999999999666555
Q ss_pred ccCC
Q 029925 153 MFNK 156 (185)
Q Consensus 153 k~~~ 156 (185)
.+.+
T Consensus 104 NH~~ 107 (479)
T PRK09441 104 NHKA 107 (479)
T ss_pred cccc
Confidence 5443
No 173
>PRK10785 maltodextrin glucosidase; Provisional
Probab=73.13 E-value=11 Score=36.58 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------cC-----ChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL-------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti-------------~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+=|+++++||+++|.++==+- .| +.++..+||+.|.++|++|.-.+=..+.+.
T Consensus 181 I~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~V~NH~~~ 253 (598)
T PRK10785 181 ISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDGVFNHTGD 253 (598)
T ss_pred HHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEECCCcCCC
Confidence 55557899999999999975332 22 237899999999999999966555554443
No 174
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=72.93 E-value=11 Score=31.72 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc------cCChhHHHHHHHHHHHCCCee
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL------EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti------~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.++++.++||+.||+.-+.. .++.+...++.+.+++.|+++
T Consensus 12 ~~~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~~gl~l 61 (273)
T smart00518 12 LYKAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKENNIDV 61 (273)
T ss_pred HhHHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 44455556666666666654333 244555555555555666554
No 175
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=72.86 E-value=11 Score=38.15 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
++-+.++++|||++|+++-=+-. =++++..++|+.+.++|++|+-.+=......
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~~~~~Gtp~dlk~LVd~aH~~GI~VilDvV~nH~~~ 327 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAVSSRSGTPEDLKYLIDKAHSLGLRVLMDVVHSHASK 327 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 44588999999999998742110 1247888999999999999977666555544
No 176
>PRK12677 xylose isomerase; Provisional
Probab=72.66 E-value=7.5 Score=35.80 Aligned_cols=46 Identities=15% Similarity=0.239 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---cCChhH----HHHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL---EIPEET----LLRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---~i~~~~----r~~lI~~~~~~Gf~v~ 147 (185)
...+.++.++++||++||+.+..+ +.+..+ ..++-+.+++.|++|.
T Consensus 32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~v~ 84 (384)
T PRK12677 32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLVVP 84 (384)
T ss_pred CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCeeE
Confidence 578888889999999999986533 223332 4567777889999964
No 177
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=72.31 E-value=4.8 Score=41.49 Aligned_cols=68 Identities=18% Similarity=0.363 Sum_probs=51.3
Q ss_pred HHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 72 IEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 72 L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+.+.|++++++|+ -++|| ||+ +.| .+|-+.|.+-|+..|==+--.+++ ..+|.+....|.+.|+.|+|
T Consensus 69 IdeII~iAk~~gaDaIhPGYGfL----SEn----~efA~~c~eaGI~FIGP~~e~ld~-~GdKv~Ar~~A~~agvPvip 138 (1149)
T COG1038 69 IDEIIRIAKRSGADAIHPGYGFL----SEN----PEFARACAEAGITFIGPKPEVLDM-LGDKVKARNAAIKAGVPVIP 138 (1149)
T ss_pred HHHHHHHHHHcCCCeecCCcccc----cCC----HHHHHHHHHcCCEEeCCCHHHHHH-hccHHHHHHHHHHcCCCccC
Confidence 8899999999999 78899 864 455 678888999888887655555543 23456677777888888766
No 178
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=72.30 E-value=12 Score=29.78 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=59.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCC-C
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGF-D 116 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF-~ 116 (185)
|.+-+..+|+.+| .+.+=+|- -.| .++-++.+.+++..+-. -.+.=... ..+++.++.+++.|+ +
T Consensus 15 Gkniv~~~L~~~G--feVidLG~----~v~---~e~~v~aa~~~~adiVglS~L~t~~~----~~~~~~~~~l~~~gl~~ 81 (128)
T cd02072 15 GNKILDHAFTEAG--FNVVNLGV----LSP---QEEFIDAAIETDADAILVSSLYGHGE----IDCKGLREKCDEAGLKD 81 (128)
T ss_pred HHHHHHHHHHHCC--CEEEECCC----CCC---HHHHHHHHHHcCCCEEEEeccccCCH----HHHHHHHHHHHHCCCCC
Confidence 5566677777666 34455553 112 45667777777774432 11110000 135666777888888 6
Q ss_pred EEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 117 TIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 117 ~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
..=+=-|.+.+|.+++.+-++++++.||..
T Consensus 82 v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~ 111 (128)
T cd02072 82 ILLYVGGNLVVGKQDFEDVEKRFKEMGFDR 111 (128)
T ss_pred CeEEEECCCCCChhhhHHHHHHHHHcCCCE
Confidence 445556677889999988889999998864
No 179
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=72.29 E-value=25 Score=34.58 Aligned_cols=115 Identities=11% Similarity=0.071 Sum_probs=85.0
Q ss_pred CCCceeEe----cCCCCCCcchhHHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHH
Q 029925 23 RFGVTEMR----SPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLI 96 (185)
Q Consensus 23 ~~GlTmV~----DkG~s~~~g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al 96 (185)
++-+-|++ -+||... .-+-++-+++.|.++ ||++-+.- +|-.-+.++.-|+.++++|..+..- .+.- .-
T Consensus 75 nt~lqmL~Rg~N~vGy~~~-~d~vv~~~v~~a~~~Gidv~Rifd---~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~-sp 149 (596)
T PRK14042 75 NTQLSMLLRGQNLLGYRNY-ADDVVRAFVKLAVNNGVDVFRVFD---ALNDARNLKVAIDAIKSHKKHAQGAICYTT-SP 149 (596)
T ss_pred CCceEEEeccccccccccC-ChHHHHHHHHHHHHcCCCEEEEcc---cCcchHHHHHHHHHHHHcCCEEEEEEEecC-CC
Confidence 45667777 7777665 556667788865554 99988875 5666677999999999999854332 1110 11
Q ss_pred HhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 97 RNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
...++.+-++.+.+.++|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 150 ~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~ 195 (596)
T PRK14042 150 VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQA 195 (596)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhh
Confidence 2333466677777888999999999999999999999999999986
No 180
>COG4130 Predicted sugar epimerase [Carbohydrate transport and metabolism]
Probab=72.20 E-value=5.8 Score=35.11 Aligned_cols=46 Identities=20% Similarity=0.291 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcc--cCChhHHHH-HHHHHHHCCCee
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSL--EIPEETLLR-YVRLVKSAGLKA 146 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti--~i~~~~r~~-lI~~~~~~Gf~v 146 (185)
-.+++|+..||++||+.|||-|.-- +|....-.. +-..+.+.|+..
T Consensus 17 l~v~affa~ak~lg~s~VeiRndl~~~~I~dg~p~a~vka~Aek~Gl~I 65 (272)
T COG4130 17 LSVEAFFALAKRLGLSKVEIRNDLPSNAIADGTPAAEVKALAEKAGLTI 65 (272)
T ss_pred CCHHHHHHHHHHcCcceeEEecCCCcccccCCCCHHHHHHHHHHcCcEE
Confidence 3699999999999999999977533 333333222 233455668775
No 181
>PRK09505 malS alpha-amylase; Reviewed
Probab=72.15 E-value=12 Score=37.14 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc----------------------------cC-----ChhHHHHHHHHHHHCCCeeccc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL----------------------------EI-----PEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti----------------------------~i-----~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
+.+-|+++++|||++|-||--+- .| +.++..++|+.+.++|++|.-.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~VilD 311 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRILFD 311 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 45567899999999999874211 11 3468999999999999999777
Q ss_pred cccccCCC
Q 029925 150 FAVMFNKS 157 (185)
Q Consensus 150 ~G~k~~~~ 157 (185)
+=..+.+.
T Consensus 312 ~V~NH~~~ 319 (683)
T PRK09505 312 VVMNHTGY 319 (683)
T ss_pred ECcCCCcc
Confidence 76666553
No 182
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=72.10 E-value=28 Score=31.14 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=63.6
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChh-HHHHHHHHHHhCCceecCc---c---HHHHHHHhCCchHHH---HHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP-FIEEVVKRAHQHDVYVSTG---D---WAEHLIRNGPSAFKE---YVE 108 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~-~L~eKI~l~~~~gV~v~~G---t---lfE~al~qg~~~~~~---yl~ 108 (185)
|...+.++++..-.....+.+.. +.|.. -..+-++...++|..++.. | ++..+-.+ ...++ .++
T Consensus 125 g~~~l~~li~~I~~~~p~i~Iev----l~~d~~g~~e~l~~l~~aG~dv~~hnlEt~~~l~~~vrr~--~t~e~~Le~l~ 198 (302)
T TIGR00510 125 GASHLAECIEAIREKLPNIKIET----LVPDFRGNIAALDILLDAPPDVYNHNLETVERLTPFVRPG--ATYRWSLKLLE 198 (302)
T ss_pred cHHHHHHHHHHHHhcCCCCEEEE----eCCcccCCHHHHHHHHHcCchhhcccccchHHHHHHhCCC--CCHHHHHHHHH
Confidence 45567777777766544344433 23210 0345677778888777664 2 23322211 23443 344
Q ss_pred HHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCeeccccccccCCCCCCCccccccccccccCCCCccccc
Q 029925 109 DCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTGMTM 182 (185)
Q Consensus 109 ~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~~~~~~~~~~ 182 (185)
.+++++ ..+.++.|.| -=+.+++.+.++.+++.|+...+ +|.|+.||++...|.+
T Consensus 199 ~ak~~~-pgi~~~TgiIVGlGETeee~~etl~~Lrelg~d~v~------------------igqYl~p~~~~~~v~~ 256 (302)
T TIGR00510 199 RAKEYL-PNLPTKSGIMVGLGETNEEIKQTLKDLRDHGVTMVT------------------LGQYLRPSRRHLPVKR 256 (302)
T ss_pred HHHHhC-CCCeecceEEEECCCCHHHHHHHHHHHHhcCCCEEE------------------eecccCCCCCCCcccc
Confidence 444541 1123333222 45566666777777777665543 5778888887766543
No 183
>PRK05985 cytosine deaminase; Provisional
Probab=72.00 E-value=25 Score=31.45 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc--ccCChhHHHHHHHHHHHCC
Q 029925 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS--LEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~-~IEISdGt--i~i~~~~r~~lI~~~~~~G 143 (185)
++.|++.++++++||+++.. ...-+.. . ..++++++.++++|+. .+-++=.+ -.++++++.++|+++++.|
T Consensus 190 ~~~l~~~~~~A~~~g~~i~~Hv~e~~d~~--~--~~~~~~~e~~~~~g~~~~~~i~H~~~l~~~~~~~~~~~i~~lae~g 265 (391)
T PRK05985 190 EGQLDIVFGLAERHGVGIDIHLHEPGELG--A--FQLERIAARTRALGMQGRVAVSHAFCLGDLPEREVDRLAERLAEAG 265 (391)
T ss_pred HHHHHHHHHHHHHhCCCcEEeeCCCCCcc--H--HHHHHHHHHHHHhCCCCCEehhhhhhhhcCCHHHHHHHHHHHHHcC
Confidence 36789999999999987633 2111111 1 1455677777888885 23333332 2567777889999999999
Q ss_pred Ceeccc
Q 029925 144 LKAKPK 149 (185)
Q Consensus 144 f~v~~E 149 (185)
..|...
T Consensus 266 ~~v~~~ 271 (391)
T PRK05985 266 VAIMTN 271 (391)
T ss_pred CeEEEe
Confidence 998543
No 184
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=71.97 E-value=7 Score=29.76 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=32.5
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
+...+.+++|.++|+..|=+-.| ..-.++++.+++.|+++.
T Consensus 66 ~~~~~~v~~~~~~g~~~v~~~~g------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 66 DKVPEIVDEAAALGVKAVWLQPG------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp HHHHHHHHHHHHHT-SEEEE-TT------S--HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHcCCCEEEEEcc------hHHHHHHHHHHHcCCEEE
Confidence 48899999999999999999888 555689999999999986
No 185
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=71.47 E-value=9 Score=37.06 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCc------------------ccC-----------C-------hhHHHHHHHHHHHCCCe
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGS------------------LEI-----------P-------EETLLRYVRLVKSAGLK 145 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGt------------------i~i-----------~-------~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+-|+++++||+++||++==+ -.. + .++..++|+.+.++|++
T Consensus 165 g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~ 244 (605)
T TIGR02104 165 GVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIR 244 (605)
T ss_pred cchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCE
Confidence 45677899999999999984221 111 1 37899999999999999
Q ss_pred eccccccccC
Q 029925 146 AKPKFAVMFN 155 (185)
Q Consensus 146 v~~E~G~k~~ 155 (185)
|+-++=..+.
T Consensus 245 VilDvV~NH~ 254 (605)
T TIGR02104 245 VIMDVVYNHT 254 (605)
T ss_pred EEEEEEcCCc
Confidence 9766655544
No 186
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=71.31 E-value=19 Score=34.52 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=67.6
Q ss_pred chhHHHHHHHhhcc-cccEEeee------CcccccCChhHHHHHHHHHHhCCceecC-cc-HHHHHH--------HhCCc
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFS------GGSHSLMPKPFIEEVVKRAHQHDVYVST-GD-WAEHLI--------RNGPS 101 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg------~GTs~l~p~~~L~eKI~l~~~~gV~v~~-Gt-lfE~al--------~qg~~ 101 (185)
.+..+++.+...|. =|-++-.. +|+ .+|-+.|++--++||+|||++.. |. +||.|+ .+| -
T Consensus 168 dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGq--pvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~-~ 244 (467)
T TIGR02617 168 DLEGLERGIEEVGPNNVPYIVATITCNSAGGQ--PVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKN-W 244 (467)
T ss_pred CHHHHHHHHhhcCCCCceeeeeeEEEecCCCE--EeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcC-C
Confidence 67788999987552 23333322 233 56677899999999999999998 74 999664 232 3
Q ss_pred hHHHHHHHHHHcCCCEEEecC---------CcccCChhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVGFDTIELNV---------GSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd---------Gti~i~~~~r~~lI~~~~~~ 142 (185)
.+.++.++.-+ .+|.|-+|- |.+-.+.+++.++-++++..
T Consensus 245 si~eI~rE~~~-~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~ 293 (467)
T TIGR02617 245 SIEQITRETYK-YADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTL 293 (467)
T ss_pred CHHHHHHHhhc-cCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhh
Confidence 57777755544 378887773 44566677666677776653
No 187
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=71.14 E-value=11 Score=33.35 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=24.0
Q ss_pred cCChhHHHHHHHHHHHCCCeecccccc
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
-.+.++-.++++.|+++|..|+||+-.
T Consensus 78 ~YT~~di~eiv~yA~~rgI~vIPEID~ 104 (326)
T cd06564 78 YYTKEEFKELIAYAKDRGVNIIPEIDS 104 (326)
T ss_pred cccHHHHHHHHHHHHHcCCeEeccCCC
Confidence 578999999999999999999998754
No 188
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=71.04 E-value=15 Score=31.09 Aligned_cols=74 Identities=15% Similarity=0.140 Sum_probs=43.9
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt-lfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
.+...-++++..+.+++.+|+|++...-+..+. |+.++++|..+..-. |... ++....|++.+.+.|++.
T Consensus 13 ~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~~~----i~~l~~~~~~i~~D~Kl~Di-----~~t~~~~i~~~~~~gad~ 83 (230)
T PRK00230 13 SKEEALAFLDQLDPAVLFVKVGMELFTAGGPQF----VRELKQRGFKVFLDLKLHDI-----PNTVAKAVRALAKLGVDM 83 (230)
T ss_pred CHHHHHHHHHhcCCcccEEEEcHHHHHhcCHHH----HHHHHhcCCCEEEEeehhhc-----cccHHHHHHHHHHcCCCE
Confidence 556777899999999999999998877555544 444444444433321 2221 113334555555555555
Q ss_pred EEec
Q 029925 118 IELN 121 (185)
Q Consensus 118 IEIS 121 (185)
|-|.
T Consensus 84 itvH 87 (230)
T PRK00230 84 VNVH 87 (230)
T ss_pred EEEc
Confidence 5444
No 189
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=70.84 E-value=12 Score=35.88 Aligned_cols=54 Identities=20% Similarity=0.153 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc--------------cC-----ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL--------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti--------------~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+.+-++++++|||++|.++-=+- .+ +.++..++|+.|.++|++|.-.+=....+
T Consensus 29 i~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id~~~Gt~~~~~~lv~~ah~~gi~vilD~v~NH~~ 101 (543)
T TIGR02403 29 IIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAINPLFGTMADFEELVSEAKKRNIKIMLDMVFNHTS 101 (543)
T ss_pred HHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccCcccCCHHHHHHHHHHHHHCCCEEEEEECccccc
Confidence 44446677788888887653211 11 23789999999999999997766555544
No 190
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=70.27 E-value=9.9 Score=37.80 Aligned_cols=69 Identities=25% Similarity=0.314 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEE--------------Eec---------
Q 029925 67 MPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI--------------ELN--------- 121 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I--------------EIS--------- 121 (185)
-+++..++-|+.+|++||.+. +|.=-+.|.. -|+++|+..- ..+
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~-----------IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 510 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKE-----------TARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVE 510 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHH
Confidence 356668999999999999764 5854444432 2677777531 011
Q ss_pred --CCcccCChhHHHHHHHHHHHCCCee
Q 029925 122 --VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 122 --dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+-+-.+.+++|.++|+..++.|-.|
T Consensus 511 ~~~vfAr~~Pe~K~~iV~~lq~~G~~V 537 (755)
T TIGR01647 511 DADGFAEVFPEHKYEIVEILQKRGHLV 537 (755)
T ss_pred hCCEEEecCHHHHHHHHHHHHhcCCEE
Confidence 1456789999999999999999877
No 191
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=70.04 E-value=19 Score=32.07 Aligned_cols=102 Identities=21% Similarity=0.312 Sum_probs=58.9
Q ss_pred HHHHHHHhhccc-cc-EEe-eeCccc---ccCChhHHHHHHHHHHhCC-c-eecCccHHHHHHHhCCch-HHHHHHHHHH
Q 029925 42 VLEDIFESMGQF-VD-GLK-FSGGSH---SLMPKPFIEEVVKRAHQHD-V-YVSTGDWAEHLIRNGPSA-FKEYVEDCKQ 112 (185)
Q Consensus 42 ~~eDlLe~ag~y-ID-~lK-fg~GTs---~l~p~~~L~eKI~l~~~~g-V-~v~~GtlfE~al~qg~~~-~~~yl~~~k~ 112 (185)
+++.+++..+.. .+ .+| |--|++ ...|.+.+++..+.+++.+ + .+...+ .|+. -++.++.+++
T Consensus 54 ~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~~~~~~~i~~~l~~~~~~~~i~~es--------rpd~i~~e~L~~l~~ 125 (313)
T TIGR01210 54 QFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVPKETRNYIFEKIAQRDNLKEVVVES--------RPEFIDEEKLEELRK 125 (313)
T ss_pred HHHHHHHHhhcccccEEEEEecCCCcCCcCcCCHHHHHHHHHHHHhcCCcceEEEEe--------CCCcCCHHHHHHHHH
Confidence 445555554432 11 235 433332 3567777888888887776 3 222111 1222 2677888899
Q ss_pred cCCC-EEEecCCcccCC-------------hhHHHHHHHHHHHCCCeeccccccc
Q 029925 113 VGFD-TIELNVGSLEIP-------------EETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 113 lGF~-~IEISdGti~i~-------------~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
.|++ .|+| |.-+.+ .++-.+.++.+++.|+.|+.-+=..
T Consensus 126 aG~~~~v~i--G~ES~~d~~L~~~inKg~t~~~~~~ai~~~~~~Gi~v~~~~i~G 178 (313)
T TIGR01210 126 IGVNVEVAV--GLETANDRIREKSINKGSTFEDFIRAAELARKYGAGVKAYLLFK 178 (313)
T ss_pred cCCCEEEEE--ecCcCCHHHHHHhhCCCCCHHHHHHHHHHHHHcCCcEEEEEEec
Confidence 9987 4665 333333 4444578999999999986554333
No 192
>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family. Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.
Probab=70.03 E-value=67 Score=28.83 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=58.4
Q ss_pred CcccccCChhHHHHHHHHHHhCC--ceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCE-----EEecC----Ccc--
Q 029925 61 GGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDT-----IELNV----GSL-- 125 (185)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg--~~~~~~yl~~~k~lGF~~-----IEISd----Gti-- 125 (185)
.|...-.+-+.+.+-++..+++. |.++.=+..|+..... ....++-++.+++.|++. +|+-+ ..+
T Consensus 103 ~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~LkeAGld~~~~~g~E~~~~~v~~~i~~ 182 (351)
T TIGR03700 103 GGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELKEAGLDSMPGGGAEIFAEEVRQQICP 182 (351)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHHHcCCCcCCCCcccccCHHHHhhcCC
Confidence 44444445567888888888874 5554436777764332 124678888999999863 45532 111
Q ss_pred -cCChhHHHHHHHHHHHCCCeecc
Q 029925 126 -EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 126 -~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+.++|.+.|+.+++.|+++..
T Consensus 183 ~~~~~~~~l~~i~~a~~~Gi~~~s 206 (351)
T TIGR03700 183 EKISAERWLEIHRTAHELGLKTNA 206 (351)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcce
Confidence 46678888999999999998844
No 193
>PRK13745 anaerobic sulfatase-maturase; Provisional
Probab=70.00 E-value=23 Score=32.46 Aligned_cols=97 Identities=20% Similarity=0.365 Sum_probs=53.6
Q ss_pred chhHHHHHHHhhcc--cccEEee--eCcccccCChhHHHHHHHHHHh----CCce--ecC-ccHHHHHHHhCCchHHHHH
Q 029925 39 SHNVLEDIFESMGQ--FVDGLKF--SGGSHSLMPKPFIEEVVKRAHQ----HDVY--VST-GDWAEHLIRNGPSAFKEYV 107 (185)
Q Consensus 39 g~~~~eDlLe~ag~--yID~lKf--g~GTs~l~p~~~L~eKI~l~~~----~gV~--v~~-GtlfE~al~qg~~~~~~yl 107 (185)
....++.+++...+ =+..+-| .+|=-.|.+...+++-+++.++ .+|. +.+ |+++- ++..
T Consensus 49 s~e~~~~~i~~~~~~~~~~~v~i~f~GGEPlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~----------~e~~ 118 (412)
T PRK13745 49 SDELLEKFIKEYINSQTMPQVLFTWHGGETLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLT----------DEWC 118 (412)
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEEEEccccCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCC----------HHHH
Confidence 44466666554322 1244444 3477777776667777777553 2343 334 66553 2344
Q ss_pred HHHHHcCCCEEEec-CCcccCChhHH------------HHHHHHHHHCCCee
Q 029925 108 EDCKQVGFDTIELN-VGSLEIPEETL------------LRYVRLVKSAGLKA 146 (185)
Q Consensus 108 ~~~k~lGF~~IEIS-dGti~i~~~~r------------~~lI~~~~~~Gf~v 146 (185)
+.+++.+| .|-|| ||.-++-+.-| .+-|+.+++.|..+
T Consensus 119 ~~l~~~~~-~v~ISlDG~~~~hD~~R~~~~g~gsf~~v~~~i~~l~~~gi~~ 169 (412)
T PRK13745 119 EFFRENNF-LVGVSIDGPQEFHDEYRKNKMGKPSFVKVMKGINLLKKHGVEW 169 (412)
T ss_pred HHHHHcCe-EEEEEecCCHHHhhhhcCCCCCCccHHHHHHHHHHHHHcCCCE
Confidence 44666777 78888 66533222112 34567778888654
No 194
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=69.93 E-value=43 Score=31.51 Aligned_cols=90 Identities=11% Similarity=0.190 Sum_probs=53.2
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCC-ceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-----
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL----- 125 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti----- 125 (185)
+..+-|.-.+..+ +++.+++..+.+.+.| +.+.-+ +=.... ..+ ++.++.+++.|+..|.|.--|.
T Consensus 240 v~~~~~~Dd~f~~-~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i-~~d----~ell~~l~~aG~~~v~iGiES~~~~~L 313 (497)
T TIGR02026 240 VGFFILADEEPTI-NRKKFQEFCEEIIARNPISVTWGINTRVTDI-VRD----ADILHLYRRAGLVHISLGTEAAAQATL 313 (497)
T ss_pred CCEEEEEeccccc-CHHHHHHHHHHHHhcCCCCeEEEEecccccc-cCC----HHHHHHHHHhCCcEEEEccccCCHHHH
Confidence 4555666555443 3445666666666655 433221 111111 111 5778888899999888844333
Q ss_pred -----cCChhHHHHHHHHHHHCCCeeccc
Q 029925 126 -----EIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 126 -----~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
..+.++-.+.|+.+++.|+.+...
T Consensus 314 ~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~ 342 (497)
T TIGR02026 314 DHFRKGTTTSTNKEAIRLLRQHNILSEAQ 342 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHCCCcEEEE
Confidence 245566778889999999887444
No 195
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=69.91 E-value=6.6 Score=34.51 Aligned_cols=72 Identities=25% Similarity=0.327 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-----------hHHHHH
Q 029925 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-----------ETLLRY 135 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~-----------~~r~~l 135 (185)
-..+.|++.|+.+|++||.|+. |+ + --.+-++.++++|.++||+-.|...-.. +.....
T Consensus 108 ~~~~~l~~~i~~L~~~gIrvSL--Fi------D--P~~~qi~~A~~~Gad~VELhTG~yA~a~~~~~~~~~ell~~l~~a 177 (239)
T PF03740_consen 108 GNRDRLKPVIKRLKDAGIRVSL--FI------D--PDPEQIEAAKELGADRVELHTGPYANAFDDAEEAEEELLERLRDA 177 (239)
T ss_dssp GGHHHHHHHHHHHHHTT-EEEE--EE---------S-HHHHHHHHHTT-SEEEEETHHHHHHSSHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCEEEE--Ee------C--CCHHHHHHHHHcCCCEEEEehhHhhhhcCCHHHHHHHHHHHHHHH
Confidence 3457799999999999999985 11 1 1133367789999999999998762221 112233
Q ss_pred HHHHHHCCCeecc
Q 029925 136 VRLVKSAGLKAKP 148 (185)
Q Consensus 136 I~~~~~~Gf~v~~ 148 (185)
-+.+.+.|+.|..
T Consensus 178 a~~a~~lGL~VnA 190 (239)
T PF03740_consen 178 ARYAHELGLGVNA 190 (239)
T ss_dssp HHHHHHTT-EEEE
T ss_pred HHHHHHcCCEEec
Confidence 4566788998854
No 196
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=69.90 E-value=5.8 Score=36.56 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcc----------cccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-c-cHH
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQ----------FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-G-DWA 92 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~----------yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-G-tlf 92 (185)
|...++++|-.-...+..+++-+.. .+ ++--.. -.|| |||.+.|++..++||+||+++.- | -++
T Consensus 99 ~~~~~~~~g~~Gklt~e~v~~~i~~-~d~~~~~~~~~~~e~~~t-e~Gt--Vy~l~el~~i~~~~k~~~l~LHmDGAR~~ 174 (342)
T COG2008 99 GQKLPIVPGADGKLTPEDVEAAIRP-DDIHHAPTPLAVLENTAT-EGGT--VYPLDELEAISAVCKEHGLPLHMDGARLA 174 (342)
T ss_pred CceeccCCCCCCCcCHHHHHHhhcC-CCcccCCCceEEEeeccC-CCce--ecCHHHHHHHHHHHHHhCCceeechHHHH
Confidence 4666777754222244455554443 22 111122 2355 99999999999999999999999 7 499
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
..+..-| -...+|-+ |||.+-|.
T Consensus 175 nA~valg-~~~~~~~~-----~~D~v~~~ 197 (342)
T COG2008 175 NALVALG-VALKTIKS-----YVDSVSFC 197 (342)
T ss_pred HHHHHcC-CCHHHHHh-----hCCEEEEe
Confidence 9999887 34555544 55555554
No 197
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=69.69 E-value=5.2 Score=31.16 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=63.9
Q ss_pred HHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..++-...+++ =+.|-.++.+ ...+ | .++++++|| .+.. |-+.+.|+.+- ...+.++||+.+=+
T Consensus 78 ~~~l~~~~~~~-vi~K~~~saf--~~t~-L---~~~L~~~gi~~vil~G~~t~~CV~~T-------a~~a~~~g~~v~v~ 143 (174)
T PF00857_consen 78 VPELAPQPGDP-VIEKNRYSAF--FGTD-L---DEILRKRGIDTVILCGVATDVCVLAT-------ARDAFDRGYRVIVV 143 (174)
T ss_dssp HGGGHCHTTSE-EEEESSSSTT--TTSS-H---HHHHHHTTESEEEEEEESTTTHHHHH-------HHHHHHTT-EEEEE
T ss_pred eeEeecccccc-eEEeeccccc--cccc-c---cccccccccceEEEcccccCcEEehh-------HHHHHHCCCEEEEE
Confidence 33333333433 3458766554 4432 3 355778999 4444 77889888774 24467889999999
Q ss_pred cCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 121 NVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+|.+-..+.+.....++.++..|-.|.+
T Consensus 144 ~Da~~~~~~~~h~~~l~~l~~~~~~v~t 171 (174)
T PF00857_consen 144 EDACASYSPEAHEAALEELRKRGAEVIT 171 (174)
T ss_dssp EEEEEBSSHHHHHHHHHHHHHHTSEEE-
T ss_pred ChhhcCCCHHHHHHHHHHHHhCCCEEEe
Confidence 9999999999999999999988877743
No 198
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=69.65 E-value=11 Score=38.30 Aligned_cols=68 Identities=19% Similarity=0.299 Sum_probs=49.4
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE------EEec--------------CCcc
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT------IELN--------------VGSL 125 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~------IEIS--------------dGti 125 (185)
+++..++-|+.+|++||.|. +|.=-..|.. -|+++|++. -|++ +-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~a-----------IA~~lGI~~~~vi~G~el~~~~~~el~~~v~~~~VfA 619 (903)
T PRK15122 551 PKESAAPAIAALRENGVAVKVLTGDNPIVTAK-----------ICREVGLEPGEPLLGTEIEAMDDAALAREVEERTVFA 619 (903)
T ss_pred cHHHHHHHHHHHHHCCCeEEEECCCCHHHHHH-----------HHHHcCCCCCCccchHhhhhCCHHHHHHHhhhCCEEE
Confidence 45668999999999999665 6854444432 277788751 1111 3456
Q ss_pred cCChhHHHHHHHHHHHCCCee
Q 029925 126 EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+++++|.++|+..++.|-.|
T Consensus 620 r~sPe~K~~iV~~Lq~~G~vV 640 (903)
T PRK15122 620 KLTPLQKSRVLKALQANGHTV 640 (903)
T ss_pred EeCHHHHHHHHHHHHhCCCEE
Confidence 789999999999999999887
No 199
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=69.63 E-value=4.2 Score=34.40 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
..-.+.++.++++||++.|| |--|+.- +.++|++.|-+=
T Consensus 88 ~~~~~v~~~~~~~~i~~iPG~~TptEi~~-------------A~~~G~~~vK~F 128 (196)
T PF01081_consen 88 GFDPEVIEYAREYGIPYIPGVMTPTEIMQ-------------ALEAGADIVKLF 128 (196)
T ss_dssp S--HHHHHHHHHHTSEEEEEESSHHHHHH-------------HHHTT-SEEEET
T ss_pred CCCHHHHHHHHHcCCcccCCcCCHHHHHH-------------HHHCCCCEEEEe
Confidence 35667889999999999998 8888864 345788887763
No 200
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=69.63 E-value=7.3 Score=35.00 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=33.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHH--HHHHHHHHhCCceecCc-cH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFI--EEVVKRAHQHDVYVSTG-DW 91 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L--~eKI~l~~~~gV~v~~G-tl 91 (185)
.+..++.+++.++ |++|+= .+-|+ .. ++.|+.++++|+.|+.| +.
T Consensus 147 ~~~~~~~~~~~~~---~~ik~~----tlaPE-~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 147 DPEELKKWLEAAG---GLIKLV----TLAPE-LDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CHHHHHHHHHhcC---CCEEEE----EECCC-CCChHHHHHHHHHCCeEEEeeCCc
Confidence 3356677776544 888985 45554 56 89999999999999877 53
No 201
>TIGR00238 KamA family protein. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein.
Probab=69.50 E-value=43 Score=30.07 Aligned_cols=98 Identities=13% Similarity=0.140 Sum_probs=66.4
Q ss_pred hHHHHHHHhhcc--cccEEeeeCcccccCChhHHHHHHHHHHhC----CceecC---ccHHHHHHHhCCchHHHHHHHHH
Q 029925 41 NVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVST---GDWAEHLIRNGPSAFKEYVEDCK 111 (185)
Q Consensus 41 ~~~eDlLe~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~---GtlfE~al~qg~~~~~~yl~~~k 111 (185)
..++.+++.... -|.-|-|.+|--.+.+.+.|.+-++.+++. +|.+.+ +++-.. --++.++..+
T Consensus 145 ~~~~~~i~~i~~~~~i~eV~lsGGDPLl~~d~~L~~ll~~L~~i~~~~~IRi~tr~~~~~P~r-------it~el~~~L~ 217 (331)
T TIGR00238 145 KKWQKALDYIAEHPEIIEILISGGDPLMAKDHELEWLLKRLEEIPHLVRLRIGTRLPVVIPQR-------ITDELCELLA 217 (331)
T ss_pred HHHHHHHHHHHhCCCcCEEEEECCccccCCHHHHHHHHHHHHhcCCccEEEeecCCCccCchh-------cCHHHHHHHH
Confidence 455555554432 356788999998888877788888887774 455543 333211 1246667788
Q ss_pred HcCCCEEEec--CCcccCChhHHHHHHHHHHHCCCee
Q 029925 112 QVGFDTIELN--VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 112 ~lGF~~IEIS--dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.|+..+=+| ++.-++.++. .+.|+++++.|+.+
T Consensus 218 ~~~~~~~~vsh~nh~~Ei~~~~-~~ai~~L~~aGi~v 253 (331)
T TIGR00238 218 SFELQLMLVTHINHCNEITEEF-AEAMKKLRTVNVTL 253 (331)
T ss_pred hcCCcEEEEccCCChHhCCHHH-HHHHHHHHHcCCEE
Confidence 8899988888 5555665554 58889999999988
No 202
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=69.05 E-value=33 Score=30.79 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=71.9
Q ss_pred chhHHHHHHHhhcccccE---EeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-C---chHHHHH
Q 029925 39 SHNVLEDIFESMGQFVDG---LKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-P---SAFKEYV 107 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~---lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~---~~~~~yl 107 (185)
.+..++++++..-.++.. ..+.. -.-|..+-.+++++++++|+ .++.| ++=+..+.. + + +.+.+.+
T Consensus 66 ~~~~l~~ll~~i~~~~~~~~~~eit~---e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~~~~~~~~~~i 142 (377)
T PRK08599 66 SAEQLERLLTAIHRNLPLSGLEEFTF---EANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRTHNEEDVYEAI 142 (377)
T ss_pred CHHHHHHHHHHHHHhCCCCCCCEEEE---EeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHH
Confidence 678999999988877543 23432 34555666899999999999 66667 554444322 1 1 2466778
Q ss_pred HHHHHcCCCEE--EecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 108 EDCKQVGFDTI--ELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 108 ~~~k~lGF~~I--EISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+++.||+.| -+--|.=.-+.++..+.++.+.+.+..
T Consensus 143 ~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~~~ 182 (377)
T PRK08599 143 ANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALALDIP 182 (377)
T ss_pred HHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHccCCC
Confidence 88889999854 444565566777888888888887754
No 203
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=68.84 E-value=9.7 Score=29.10 Aligned_cols=48 Identities=27% Similarity=0.424 Sum_probs=37.8
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.|...+++|++.|++.|++.|=|+|= -+-..-....+.+++.|+++.+
T Consensus 13 dg~~~~~e~v~~A~~~Gl~~i~iTDH---~~~~~~~~~~~~~~~~~i~vi~ 60 (175)
T PF02811_consen 13 DGKDSPEEYVEQAKEKGLDAIAITDH---NNFAGYPDFYKEAKKKGIKVIP 60 (175)
T ss_dssp TSSSSHHHHHHHHHHTTESEEEEEEE---TTTTTHHHHHHHHHHTTSEEEE
T ss_pred hhcCCHHHHHHHHHHcCCCEEEEcCC---cccccchHHHHHHHhcCCceEE
Confidence 34457999999999999999999987 2223355777888889999977
No 204
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.81 E-value=5.2 Score=34.88 Aligned_cols=41 Identities=27% Similarity=0.394 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCC----------hhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIP----------EETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~----------~~~r~~lI~~~~~~ 142 (185)
...++++.+.++|++.|+||.|+..-+ .....++++.+++.
T Consensus 229 e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~ 279 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKA 279 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHH
Confidence 455677888899999999999986432 23344666666554
No 205
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=68.54 E-value=6.9 Score=33.70 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 029925 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (185)
..-.+.++.++++||.+.|| |--|+.- +.++|++.|-+==..
T Consensus 99 ~~~~~v~~~~~~~~i~~iPG~~TpsEi~~-------------A~~~Ga~~vKlFPA~ 142 (222)
T PRK07114 99 LFNPDIAKVCNRRKVPYSPGCGSLSEIGY-------------AEELGCEIVKLFPGS 142 (222)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCCHHHHHH-------------HHHCCCCEEEECccc
Confidence 45667888999999999998 7888764 556899999886533
No 206
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=68.31 E-value=28 Score=33.14 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=66.9
Q ss_pred hcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 029925 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (185)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (185)
+..-||.+-+....+-+ +.+++-|+.++++|..+... |+- - ....+.+-++.+.+.+.|.+.|=|.|-.--
T Consensus 105 ~~~Gvd~irif~~lnd~---~n~~~~i~~ak~~G~~v~~~i~~t~~-p--~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~ 178 (467)
T PRK14041 105 AEYGLDIIRIFDALNDI---RNLEKSIEVAKKHGAHVQGAISYTVS-P--VHTLEYYLEFARELVDMGVDSICIKDMAGL 178 (467)
T ss_pred HHCCcCEEEEEEeCCHH---HHHHHHHHHHHHCCCEEEEEEEeccC-C--CCCHHHHHHHHHHHHHcCCCEEEECCccCC
Confidence 44469999988766653 45899999999999977621 111 0 112245667777888899999999999999
Q ss_pred CChhHHHHHHHHHHHC
Q 029925 127 IPEETLLRYVRLVKSA 142 (185)
Q Consensus 127 i~~~~r~~lI~~~~~~ 142 (185)
+.+.+=.++|+.++++
T Consensus 179 l~P~~v~~Lv~~lk~~ 194 (467)
T PRK14041 179 LTPKRAYELVKALKKK 194 (467)
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999999876
No 207
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=68.21 E-value=15 Score=29.27 Aligned_cols=95 Identities=20% Similarity=0.321 Sum_probs=54.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
|.+-+.-+|+.+|- +.+=+|- -.| .++-++.++++++.+-. ..+. .+.-..+++..+.+++.|...
T Consensus 17 Gk~iv~~~l~~~Gf--eVi~LG~----~v~---~e~~v~aa~~~~adiVglS~l~----~~~~~~~~~~~~~l~~~gl~~ 83 (134)
T TIGR01501 17 GNKILDHAFTNAGF--NVVNLGV----LSP---QEEFIKAAIETKADAILVSSLY----GHGEIDCKGLRQKCDEAGLEG 83 (134)
T ss_pred hHHHHHHHHHHCCC--EEEECCC----CCC---HHHHHHHHHHcCCCEEEEeccc----ccCHHHHHHHHHHHHHCCCCC
Confidence 45566667776663 3344442 111 45666667777764432 1222 111113566677777777743
Q ss_pred EEe-cCCcccCChhHHHHHHHHHHHCCCee
Q 029925 118 IEL-NVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 118 IEI-SdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+=| =-|.+.+|+++....++++++.||..
T Consensus 84 ~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 84 ILLYVGGNLVVGKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CEEEecCCcCcChhhhHHHHHHHHHcCCCE
Confidence 333 66777788888777777788888653
No 208
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=68.12 E-value=17 Score=34.91 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=76.5
Q ss_pred CCCCCCcchhHHHHHHHhhcccccEEeeeCccc---ccCChhHHHHHHHHHHhCCceec----------Cc--cHHHHHH
Q 029925 32 PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVS----------TG--DWAEHLI 96 (185)
Q Consensus 32 kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~----------~G--tlfE~al 96 (185)
.|.+-+ |-++|+.+-=-.=+|||.+=+=.|+| ++.++ --+.|+-+|++||+|+ .| -|+-.+|
T Consensus 89 sg~pS~-Gg~eF~aytFdyWQY~D~mVyWgGSsGEGii~tP--SaDVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mL 165 (553)
T COG4724 89 SGHPSV-GGEEFKAYTFDYWQYLDSMVYWGGSSGEGIIPTP--SADVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEML 165 (553)
T ss_pred CCCCCc-CcceeeeccccHHHhhhheeeecCcCCCccccCC--chhhhhhhhcCCCceeeeeecChhhcCchHHHHHHHH
Confidence 344445 66666665555668999887655554 23333 4578999999999874 24 3999999
Q ss_pred HhCCch----HHHHHHHHHHcCCCEEEecCCcccC---ChhHHHHHHHHHHHCCCee
Q 029925 97 RNGPSA----FKEYVEDCKQVGFDTIELNVGSLEI---PEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 97 ~qg~~~----~~~yl~~~k~lGF~~IEISdGti~i---~~~~r~~lI~~~~~~Gf~v 146 (185)
.|+.+. .++.++.+|-+||+.-=|+.-|.-. ..+....+|-..++.--++
T Consensus 166 k~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~~~~~a~~M~~f~ly~ke~~~~~ 222 (553)
T COG4724 166 KQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGDVKPLAEKMRQFMLYSKEYAAKV 222 (553)
T ss_pred hcCcCCCChhHHHHHHHHHhcCcceeEecccccCCCcchHHHHHHHHHHHHhccccc
Confidence 987432 6889999999999998887655422 2233447777777664444
No 209
>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed
Probab=68.10 E-value=56 Score=29.71 Aligned_cols=97 Identities=12% Similarity=0.159 Sum_probs=62.7
Q ss_pred chhHHHHHHHhhcc-cccEEeeeCccccc-CChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMGQ-FVDGLKFSGGSHSL-MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag~-yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
.+.++.+.+..+.+ =+.-+-|-.|-... .+-+.+.+.++..++. +|.+..|.+ ..+ -++.+|+.|
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i~i~~g~l----------t~e-~l~~Lk~aG 173 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSVSIEVQPL----------SEE-EYAELVELG 173 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCceeccCCC----------CHH-HHHHHHHcC
Confidence 44444444433322 25666665455444 4556777878777765 244444421 223 347899999
Q ss_pred CCEEEecCCccc------C-------ChhHHHHHHHHHHHCCCe-e
Q 029925 115 FDTIELNVGSLE------I-------PEETLLRYVRLVKSAGLK-A 146 (185)
Q Consensus 115 F~~IEISdGti~------i-------~~~~r~~lI~~~~~~Gf~-v 146 (185)
++.+-++--|.+ | +.++|++.|+++++.||+ |
T Consensus 174 v~r~~i~lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v 219 (371)
T PRK09240 174 LDGVTVYQETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKI 219 (371)
T ss_pred CCEEEEEEecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCee
Confidence 999998877752 4 568999999999999996 5
No 210
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=68.06 E-value=46 Score=27.87 Aligned_cols=81 Identities=12% Similarity=0.128 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCCceecC-cc----H----H---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhH----
Q 029925 70 PFIEEVVKRAHQHDVYVST-GD----W----A---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEET---- 131 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~-Gt----l----f---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~---- 131 (185)
..+++--++++++||.+.. +. + + +......-+.+++.++.|+.+|.+.|=+.-|... -+.++
T Consensus 47 ~~~~~l~~~~~~~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~ 126 (275)
T PRK09856 47 GGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIWGR 126 (275)
T ss_pred hHHHHHHHHHHHcCCeEEEecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHHHH
Confidence 3578888899999998754 11 1 1 1111111126888999999999999988654321 12222
Q ss_pred ----HHHHHHHHHHCCCeecccc
Q 029925 132 ----LLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 132 ----r~~lI~~~~~~Gf~v~~E~ 150 (185)
..++.+.|++.|+++-.|-
T Consensus 127 ~~~~l~~l~~~a~~~gv~l~iE~ 149 (275)
T PRK09856 127 LAENLSELCEYAENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHcCCEEEEec
Confidence 4567788889999887764
No 211
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=68.00 E-value=16 Score=35.19 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------ccC----------ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGS---------LEI----------PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt---------i~i----------~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+.+-++++++|||++|.++--+ -.. +.++..++|+.+.++|++|.-.+=..+.+
T Consensus 35 i~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id~~~Gt~~d~~~lv~~~h~~gi~vilD~V~NH~s 107 (551)
T PRK10933 35 VTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKSRGIRIILDMVFNHTS 107 (551)
T ss_pred HHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCcc
Confidence 4455788899999999885422 111 23688999999999999996655544443
No 212
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=67.73 E-value=15 Score=25.17 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=28.6
Q ss_pred HHHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHc
Q 029925 74 EVVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQV 113 (185)
Q Consensus 74 eKI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~l 113 (185)
+..++.++|||..|-| +|-|++-.+| =..++.++++.++
T Consensus 14 ~~a~vf~~~gIDfCCgG~~~L~eA~~~~~-ld~~~vl~~L~~l 55 (56)
T PF04405_consen 14 RAARVFRKYGIDFCCGGNRSLEEACEEKG-LDPEEVLEELNAL 55 (56)
T ss_pred HHHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHc
Confidence 3578899999999985 4777776665 4577777777653
No 213
>PRK15108 biotin synthase; Provisional
Probab=67.61 E-value=45 Score=30.08 Aligned_cols=67 Identities=18% Similarity=0.284 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHH
Q 029925 70 PFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRL 138 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~ 138 (185)
+.+.+.++.+|+.++.++. |. .-++.++.+|+.|.+.+=+|=-|. .=+-++|++.|+.
T Consensus 111 e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~ 179 (345)
T PRK15108 111 PYLEQMVQGVKAMGLETCMTLGT-----------LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEK 179 (345)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHHHHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHH
Confidence 5678888888888876653 42 225667778899999776643221 2356789999999
Q ss_pred HHHCCCeec
Q 029925 139 VKSAGLKAK 147 (185)
Q Consensus 139 ~~~~Gf~v~ 147 (185)
+++.|+++.
T Consensus 180 a~~~G~~v~ 188 (345)
T PRK15108 180 VRDAGIKVC 188 (345)
T ss_pred HHHcCCcee
Confidence 999999884
No 214
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=67.35 E-value=11 Score=35.85 Aligned_cols=87 Identities=13% Similarity=-0.022 Sum_probs=68.6
Q ss_pred ccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 54 VDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
.+.+-+-..||-++-+ +.+.+-+++++++|..|..+ .|.+..-+++.+.+.++.+.+.|-+.|-+.|
T Consensus 90 ~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~--~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~D 167 (494)
T TIGR00973 90 KFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFS--CEDAGRTEIPFLARIVEAAINAGATTINIPD 167 (494)
T ss_pred CCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE--cCCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 5667666666665532 33558899999999987766 3444444556788888999999999999999
Q ss_pred CcccCChhHHHHHHHHHHHC
Q 029925 123 GSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~ 142 (185)
-.--+.+++-.++|+.++++
T Consensus 168 TvG~~~P~~~~~~i~~l~~~ 187 (494)
T TIGR00973 168 TVGYALPAEYGNLIKGLREN 187 (494)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999875
No 215
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=67.34 E-value=60 Score=31.85 Aligned_cols=109 Identities=11% Similarity=0.057 Sum_probs=78.0
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhhcc-cccEEeeeCcccccCChhHHHHHHHHHHhCCcee-----cCccHH
Q 029925 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESMGQ-FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV-----STGDWA 92 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~-----~~~eDlLe~ag~-yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v-----~~Gtlf 92 (185)
.-+.|+. .|..+. |. +..+..++.|.+ -||++-+.-...- -+.++.-|+.++++|..+ |+++-
T Consensus 77 ~~lqml~-Rg~n~v-g~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd---~~~~~~ai~~ak~~G~~~~~~i~yt~~p- 150 (593)
T PRK14040 77 TPQQMLL-RGQNLL-GYRHYADDVVERFVERAVKNGMDVFRVFDAMND---PRNLETALKAVRKVGAHAQGTLSYTTSP- 150 (593)
T ss_pred CeEEEEe-cCccee-ccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc---HHHHHHHHHHHHHcCCeEEEEEEEeeCC-
Confidence 3455555 664444 32 345666777655 4999988864333 356889999999999863 22311
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 93 EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+ ...+.+.++.+.+.+.|.+.|=|.|-.--+.+.+-.++|+.+++.
T Consensus 151 ~----~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~ 196 (593)
T PRK14040 151 V----HTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKR 196 (593)
T ss_pred c----cCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 1 123467778888899999999999999999999999999999886
No 216
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=67.16 E-value=14 Score=32.53 Aligned_cols=66 Identities=8% Similarity=0.031 Sum_probs=43.2
Q ss_pred cCChhHHHHHHHHHHhCCceec---C-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVS---T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS 141 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~---~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~ 141 (185)
+++-+.|++-|+....++..+. . .+ |++ .+ + -|+.-+.-..+.++..++++.|++
T Consensus 13 ~~~~~~lk~~id~ma~~k~N~l~lhl~D~-f~~---~~------~-----------p~~~~~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 13 VPKVSYLKKLLRLLALLGANGLLLYYEDT-FPY---EG------E-----------PEVGRMRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEEecc-eec---CC------C-----------cccccCCCCcCHHHHHHHHHHHHH
Confidence 4556778888888888777432 2 22 111 11 0 122222335899999999999999
Q ss_pred CCCeecccccc
Q 029925 142 AGLKAKPKFAV 152 (185)
Q Consensus 142 ~Gf~v~~E~G~ 152 (185)
+|..|.||+-.
T Consensus 72 ~gI~vIPeid~ 82 (301)
T cd06565 72 LGIEVIPLIQT 82 (301)
T ss_pred cCCEEEecCCC
Confidence 99999998653
No 217
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=66.96 E-value=38 Score=27.72 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=58.1
Q ss_pred HHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCcee----cC-ccHHHHHHHhCCchHHHHHHHHHHcCCC-----
Q 029925 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----ST-GDWAEHLIRNGPSAFKEYVEDCKQVGFD----- 116 (185)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~----- 116 (185)
+..+|-=.=+||.+-|+..+-|. .++-++-|+++|+++ |+ .+--+-+ +. ..+-|++.++..|..
T Consensus 21 vk~~Gi~faiikateG~~~~D~~--~~~n~~~A~~aGl~vG~Yhf~~~~~~~~a--~~--eA~~f~~~~~~~~~~~~~~~ 94 (192)
T cd06522 21 LKNYGVKAVIVKLTEGTTYRNPY--AASQIANAKAAGLKVSAYHYAHYTSAADA--QA--EARYFANTAKSLGLSKNTVM 94 (192)
T ss_pred HHHcCCCEEEEEEcCCCCccChH--HHHHHHHHHHCCCeeEEEEEEecCChHHH--HH--HHHHHHHHHHHcCCCCCCce
Confidence 33344333489999999888776 999999999999954 22 1111222 22 467788888887754
Q ss_pred EEEecCCcc--cCChhHHHHHHHHHHHCCC-ee
Q 029925 117 TIELNVGSL--EIPEETLLRYVRLVKSAGL-KA 146 (185)
Q Consensus 117 ~IEISdGti--~i~~~~r~~lI~~~~~~Gf-~v 146 (185)
++.+-+.+. .+. +.-..+++++++.|. ++
T Consensus 95 ~lD~E~~~~~~~~~-~~~~~F~~~v~~~g~~~~ 126 (192)
T cd06522 95 VADMEDSSSSGNAT-ANVNAFWQTMKAAGYKNT 126 (192)
T ss_pred EEEeecCCCcchHH-HHHHHHHHHHHHcCCCCc
Confidence 334333222 222 223578888888887 45
No 218
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=66.89 E-value=15 Score=32.92 Aligned_cols=70 Identities=21% Similarity=0.293 Sum_probs=49.5
Q ss_pred cCChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 029925 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
-++.+.+++.|+.+++.|+ .|.. || |-.+ +. .+.+.++++++.|+...=++||++ |+.+ .++.+++.|
T Consensus 45 ~~~~e~~~~ii~~~~~~g~~~v~~~GG--EPll-~~--~~~~il~~~~~~g~~~~i~TNG~l-l~~~----~~~~L~~~g 114 (378)
T PRK05301 45 ELSTEEWIRVLREARALGALQLHFSGG--EPLL-RK--DLEELVAHARELGLYTNLITSGVG-LTEA----RLAALKDAG 114 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEECC--ccCC-ch--hHHHHHHHHHHcCCcEEEECCCcc-CCHH----HHHHHHHcC
Confidence 4566778899999999997 3443 53 3322 32 588999999999998888889975 5543 355666777
Q ss_pred Ce
Q 029925 144 LK 145 (185)
Q Consensus 144 f~ 145 (185)
+.
T Consensus 115 ~~ 116 (378)
T PRK05301 115 LD 116 (378)
T ss_pred CC
Confidence 64
No 219
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=66.85 E-value=9.5 Score=34.09 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=41.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhh-cccc--cEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESM-GQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHL 95 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~a-g~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~a 95 (185)
.++-+..|=.+ . +++.++.+++.- -++| |.-|.|+ +++ .++-+++|+.+||.++++.+.+..
T Consensus 236 ~~ipia~~E~~--~-~~~~~~~~i~~~~~d~i~~~~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~~~ 300 (355)
T cd03321 236 LRTPVQMGENW--L-GPEEMFKALSAGACDLVMPDLMKIGG----VTG---WLRASALAEQAGIPMSSHLFQEIS 300 (355)
T ss_pred cCCCEEEcCCC--c-CHHHHHHHHHhCCCCeEecCHhhhCC----HHH---HHHHHHHHHHcCCeecccchHHHH
Confidence 35555655543 4 778888888753 3332 4455665 333 677899999999999997665554
No 220
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=66.77 E-value=8.9 Score=32.62 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 029925 71 FIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 71 ~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (185)
.-.+-++.+++++|...|| |.-|+. + +.++|++.|-+-...
T Consensus 96 ~~~~vi~~a~~~~i~~iPG~~TptEi~--~-----------a~~~Ga~~vKlFPa~ 138 (212)
T PRK05718 96 LTPPLLKAAQEGPIPLIPGVSTPSELM--L-----------GMELGLRTFKFFPAE 138 (212)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHHH--H-----------HHHCCCCEEEEccch
Confidence 3457788888899988888 677732 2 678999999995543
No 221
>PRK12568 glycogen branching enzyme; Provisional
Probab=66.51 E-value=14 Score=37.21 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCCEEEecCC----------cc-----c-----CChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVG----------SL-----E-----IPEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdG----------ti-----~-----i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
.++.+.++++|||++||++== .- . =+.++..++|+.+.++|++|+-++=......
T Consensus 272 a~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~ 346 (730)
T PRK12568 272 AEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYAPTARHGSPDGFAQFVDACHRAGIGVILDWVSAHFPD 346 (730)
T ss_pred HHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCccCcccCCHHHHHHHHHHHHHCCCEEEEEeccccCCc
Confidence 455688999999999998632 11 1 1356889999999999999977665554443
No 222
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=66.40 E-value=7.6 Score=32.52 Aligned_cols=60 Identities=22% Similarity=0.375 Sum_probs=49.1
Q ss_pred CceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 83 DVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 83 gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.|--| |.|+..+.+= .-+++++++.+.||+.+=|-=|--..--++..+.++ +..||++
T Consensus 5 ~vFVTVGtT~Fd~LI~~V--l~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~--k~~gl~i 65 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCV--LSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIR--KNGGLTI 65 (170)
T ss_pred EEEEEeccccHHHHHHHH--cCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhc--ccCCeEE
Confidence 4556669 7999999997 889999999999999988777766566666778887 7888887
No 223
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=66.26 E-value=5.4 Score=31.89 Aligned_cols=78 Identities=21% Similarity=0.239 Sum_probs=47.2
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEeeeCccc----ccCChhHHHHHHHHHHhCCceecC-c--cHHH
Q 029925 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSH----SLMPKPFIEEVVKRAHQHDVYVST-G--DWAE 93 (185)
Q Consensus 22 R~~GlTmV~D-kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs----~l~p~~~L~eKI~l~~~~gV~v~~-G--tlfE 93 (185)
|..|....+| -|. +...++.+... -+|+||+...-. .-.....++.-+++++++|+.+.- | +
T Consensus 144 ~~~G~~i~ld~~g~----~~~~~~~l~~l---~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~--- 213 (236)
T PF00563_consen 144 RSLGFRIALDDFGS----GSSSLEYLASL---PPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAEGVES--- 213 (236)
T ss_dssp HHCT-EEEEEEETS----TCGCHHHHHHH---CGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEECE-S---
T ss_pred HhcCceeEeeeccC----Ccchhhhhhhc---ccccceeecccccccchhhHHHHHHHHHHHhhccccccceeecCC---
Confidence 3456666665 443 33344443332 278999998654 223466788899999999998876 5 2
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 94 HLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 94 ~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
++-++.++++|++++.
T Consensus 214 ----------~~~~~~l~~~G~~~~Q 229 (236)
T PF00563_consen 214 ----------EEQLELLKELGVDYIQ 229 (236)
T ss_dssp ----------HHHHHHHHHTTESEEE
T ss_pred ----------HHHHHHHHHcCCCEEE
Confidence 2223446777877653
No 224
>PLN02389 biotin synthase
Probab=66.24 E-value=24 Score=32.48 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHH
Q 029925 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVK 140 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~ 140 (185)
+.+.+.++.+++.++.++. ..| -.-++-++.+|+.|++.+-++--+. .-+-++|++.|+.++
T Consensus 153 e~i~eiir~ik~~~l~i~~--------s~G-~l~~E~l~~LkeAGld~~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~ 223 (379)
T PLN02389 153 NQILEYVKEIRGMGMEVCC--------TLG-MLEKEQAAQLKEAGLTAYNHNLDTSREYYPNVITTRSYDDRLETLEAVR 223 (379)
T ss_pred HHHHHHHHHHhcCCcEEEE--------CCC-CCCHHHHHHHHHcCCCEEEeeecCChHHhCCcCCCCCHHHHHHHHHHHH
Confidence 4577777778877776652 222 1345666778899999887654422 246788999999999
Q ss_pred HCCCeec
Q 029925 141 SAGLKAK 147 (185)
Q Consensus 141 ~~Gf~v~ 147 (185)
+.|++|.
T Consensus 224 ~~Gi~v~ 230 (379)
T PLN02389 224 EAGISVC 230 (379)
T ss_pred HcCCeEe
Confidence 9999883
No 225
>PRK06846 putative deaminase; Validated
Probab=66.13 E-value=29 Score=31.37 Aligned_cols=74 Identities=11% Similarity=0.139 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCcc--cCChhHHHHHHHHHHHCC
Q 029925 70 PFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGSL--EIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~-~IEISdGti--~i~~~~r~~lI~~~~~~G 143 (185)
+.|++-.+++++||+++.. . +.-|. + ..+++.++.++++|+. .+-++-..- .++.++..++|+++++.|
T Consensus 206 ~~l~~~~~lA~~~g~~v~~Hv~e~~~~~---~--~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~e~~~li~~la~~g 280 (410)
T PRK06846 206 KSLDTMFQIAVDFNKGVDIHLHDTGPLG---V--ATIKYLVETTEEAQWKGKVTISHAFALGDLNEEEVEELAERLAAQG 280 (410)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCChh---H--HHHHHHHHHHHHhCCCCCEEEEecchhhcCCHHHHHHHHHHHHHcC
Confidence 4588899999999987764 2 22121 1 1456677888888873 244444443 468889889999999999
Q ss_pred Ceecc
Q 029925 144 LKAKP 148 (185)
Q Consensus 144 f~v~~ 148 (185)
..|.+
T Consensus 281 ~~v~~ 285 (410)
T PRK06846 281 ISITS 285 (410)
T ss_pred CeEEE
Confidence 88854
No 226
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=65.94 E-value=69 Score=29.23 Aligned_cols=118 Identities=14% Similarity=0.221 Sum_probs=67.6
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc---eecCccH----HHHHH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDW----AEHLI 96 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~Gtl----fE~al 96 (185)
.|++.|.=-|=-++ -...+.++++.+.+.-.+-.+.. .++--.|.++++-++++|+ .++.-++ +...-
T Consensus 105 ~Gv~~I~~tGGEPl-lr~dl~eli~~l~~~~gi~~i~i----tTNG~lL~~~~~~L~~aGld~VnISLDsl~~e~~~~it 179 (373)
T PLN02951 105 AGVDKIRLTGGEPT-LRKDIEDICLQLSSLKGLKTLAM----TTNGITLSRKLPRLKEAGLTSLNISLDTLVPAKFEFLT 179 (373)
T ss_pred CCCCEEEEECCCCc-chhhHHHHHHHHHhcCCCceEEE----eeCcchHHHHHHHHHhCCCCeEEEeeccCCHHHHHHHh
Confidence 36555543332222 22346677776654312111222 2222235566777777775 4555343 33222
Q ss_pred HhC-CchHHHHHHHHHHcCCCEEEecCCccc-CChhHHHHHHHHHHHCCCee
Q 029925 97 RNG-PSAFKEYVEDCKQVGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 97 ~qg-~~~~~~yl~~~k~lGF~~IEISdGti~-i~~~~r~~lI~~~~~~Gf~v 146 (185)
..+ -+++-+-++.+++.|+..|.|+--.+. ++.++..++++.+++.|..|
T Consensus 180 r~~~~~~vl~~I~~a~~~G~~~vkin~vv~~g~N~~Ei~~li~~a~~~gi~v 231 (373)
T PLN02951 180 RRKGHDRVLESIDTAIELGYNPVKVNCVVMRGFNDDEICDFVELTRDKPINV 231 (373)
T ss_pred cCCCHHHHHHHHHHHHHcCCCcEEEEEEecCCCCHHHHHHHHHHHHhCCCeE
Confidence 111 134556667788889988888765544 78899999999999999766
No 227
>PRK09234 fbiC FO synthase; Reviewed
Probab=65.67 E-value=37 Score=34.70 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=45.0
Q ss_pred CcccccCChhHHHHHHHHHHhC--CceecCccHHHHH---HHhCCchHHHHHHHHHHcCCCEE-----EecCCc------
Q 029925 61 GGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHL---IRNGPSAFKEYVEDCKQVGFDTI-----ELNVGS------ 124 (185)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~a---l~qg~~~~~~yl~~~k~lGF~~I-----EISdGt------ 124 (185)
.|...-.+.+.+.+.++..|+. +|.+..=+=.|+. ..-| -..+++++.+|+.|.+.+ ||-+--
T Consensus 581 gG~~p~~~~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~G-l~~~e~l~~LkeAGLds~pgt~aeil~d~vr~~i~ 659 (843)
T PRK09234 581 GGIHPELPGTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLG-LSIREWLTALREAGLDTIPGTAAEILDDEVRWVLT 659 (843)
T ss_pred cCCCCCcCHHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcC-CCHHHHHHHHHHhCcCccCCCchhhCCHHHHhhcC
Confidence 3443334444455556656554 3444332333433 2222 246677777777777666 222210
Q ss_pred -ccCChhHHHHHHHHHHHCCCee
Q 029925 125 -LEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 125 -i~i~~~~r~~lI~~~~~~Gf~v 146 (185)
-.++.++|++.|+.+++.|+++
T Consensus 660 p~k~~~~~wle~i~~Ah~lGi~~ 682 (843)
T PRK09234 660 KGKLPTAEWIEVVTTAHEVGLRS 682 (843)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCc
Confidence 0345667777777777777776
No 228
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=65.67 E-value=12 Score=30.74 Aligned_cols=50 Identities=20% Similarity=0.246 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC---------C---hhHHHHHHHHHHHCCCeeccccc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEI---------P---EETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i---------~---~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
..+++++.++++||++|-|--+--.+ + -+...++|+.++++|++|+..+-
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h 83 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLH 83 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 67899999999999999876553111 1 14456789999999999976443
No 229
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=65.59 E-value=14 Score=37.63 Aligned_cols=68 Identities=26% Similarity=0.301 Sum_probs=49.0
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE---E-----------------EecCCcc
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT---I-----------------ELNVGSL 125 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~---I-----------------EISdGti 125 (185)
+++..++-|+.+|++||.|. +|.=-+.|.. -|+++|++. + +=-+-+-
T Consensus 551 ~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~-----------IA~~lGI~~~~v~~G~el~~l~~~el~~~~~~~~VfA 619 (902)
T PRK10517 551 PKETTAPALKALKASGVTVKILTGDSELVAAK-----------VCHEVGLDAGEVLIGSDIETLSDDELANLAERTTLFA 619 (902)
T ss_pred chhhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCccCceeHHHHHhCCHHHHHHHHhhCcEEE
Confidence 45668899999999999664 6854444432 377888751 0 0002345
Q ss_pred cCChhHHHHHHHHHHHCCCee
Q 029925 126 EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+++++|.++|+..++.|-.|
T Consensus 620 r~sPe~K~~IV~~Lq~~G~vV 640 (902)
T PRK10517 620 RLTPMHKERIVTLLKREGHVV 640 (902)
T ss_pred EcCHHHHHHHHHHHHHCCCEE
Confidence 789999999999999999887
No 230
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=65.55 E-value=15 Score=37.61 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+-+.++++|||++|.+|==+-.. +.++..++|+.++++|++|+-.+=..+.+.
T Consensus 18 ~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp~lGt~edf~~Lv~aah~~Gm~vIlDiVpNH~a~ 92 (825)
T TIGR02401 18 AAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINPELGGEEGLRRLSEAARARGLGLIVDIVPNHMAV 92 (825)
T ss_pred HHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccc
Confidence 5566788899999999887643321 378899999999999999977665555443
No 231
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=65.54 E-value=58 Score=25.97 Aligned_cols=96 Identities=20% Similarity=0.329 Sum_probs=58.3
Q ss_pred chhHHHHHHHhhccc-ccEEeeeCcccccCCh-----hHHHHHHHHH-HhCCceecCccHHHHHHHhCCchHHHHHHHHH
Q 029925 39 SHNVLEDIFESMGQF-VDGLKFSGGSHSLMPK-----PFIEEVVKRA-HQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCK 111 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~p~-----~~L~eKI~l~-~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k 111 (185)
.+..+.+.++.+-.. +|.+-|+..--.+.+. +.+++-.+.+ +..+|.+. .. ...+|++.|.
T Consensus 10 d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~---------~~---d~~~~~~~~~ 77 (211)
T cd00429 10 DFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLM---------VE---NPERYIEAFA 77 (211)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEee---------eC---CHHHHHHHHH
Confidence 444677777777776 8999886433222221 2333333332 11111111 12 2356899999
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+.|.+.|=|-++.. ++..+.++.+++.|+.+...+
T Consensus 78 ~~g~dgv~vh~~~~----~~~~~~~~~~~~~~~~~g~~~ 112 (211)
T cd00429 78 KAGADIITFHAEAT----DHLHRTIQLIKELGMKAGVAL 112 (211)
T ss_pred HcCCCEEEECccch----hhHHHHHHHHHHCCCeEEEEe
Confidence 99999998888754 455677999999998875544
No 232
>PRK05402 glycogen branching enzyme; Provisional
Probab=65.45 E-value=15 Score=36.46 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
-.++.+.++++||+++||++==+- .+ +.++..++|+.+.++|++|+-.+=..+.
T Consensus 267 i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~~~~Gt~~dfk~lV~~~H~~Gi~VilD~V~NH~ 340 (726)
T PRK05402 267 LADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPTSRFGTPDDFRYFVDACHQAGIGVILDWVPAHF 340 (726)
T ss_pred HHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcCcccCCHHHHHHHHHHHHHCCCEEEEEECCCCC
Confidence 345556889999999999864221 11 2568889999999999999766554443
No 233
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=65.10 E-value=14 Score=31.75 Aligned_cols=78 Identities=10% Similarity=0.080 Sum_probs=45.9
Q ss_pred ChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 68 PKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+++-|+.+-++|| -++ .|+--|..... .+.-.+.++.+.+.-=..+.|--|....+.++=.++++.+++.|..
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt-~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G~d 97 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVVCGTTGESPTLS-DEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAGAD 97 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCcchhhCC-HHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcCCC
Confidence 44567788888888887 233 35544543322 1233444444433322345666777777777777888888888776
Q ss_pred e
Q 029925 146 A 146 (185)
Q Consensus 146 v 146 (185)
.
T Consensus 98 ~ 98 (284)
T cd00950 98 A 98 (284)
T ss_pred E
Confidence 3
No 234
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=65.05 E-value=38 Score=25.45 Aligned_cols=84 Identities=14% Similarity=0.217 Sum_probs=58.9
Q ss_pred eeCcccccCChhHHHHHHHHHHhCC-ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------cCCh
Q 029925 59 FSGGSHSLMPKPFIEEVVKRAHQHD-VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL--------EIPE 129 (185)
Q Consensus 59 fg~GTs~l~p~~~L~eKI~l~~~~g-V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti--------~i~~ 129 (185)
+|=||..-. ++..++..+.+++.+ ..++.|+ +| + +- .+++-+++|.+-|.+.|-|-=-++ |||-
T Consensus 6 vgHGSr~~~-~~~~~~l~~~l~~~~~~~v~~~~-lE-~--~P--~i~~~l~~l~~~G~~~i~lvPl~L~~G~H~~~Dipg 78 (103)
T cd03413 6 MGHGTDHPS-NAVYAALEYVLREEDPANVFVGT-VE-G--YP--GLDDVLAKLKKAGIKKVTLMPLMLVAGDHAHNDMAG 78 (103)
T ss_pred EECCCCchh-hhHHHHHHHHHHhcCCCcEEEEE-Ec-C--CC--CHHHHHHHHHHcCCCEEEEEehhheecccchhcCCC
Confidence 455555543 355666666666654 4455444 45 2 33 789999999999999988755444 7888
Q ss_pred hHHHHHHHHHHHCCCeeccc
Q 029925 130 ETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~~E 149 (185)
++--++-.++.+.|++|.+.
T Consensus 79 e~~~SW~~~l~~~g~~v~~~ 98 (103)
T cd03413 79 DEPDSWKSILEAAGIKVETV 98 (103)
T ss_pred CCchhHHHHHHHCCCeeEEE
Confidence 87778888888899999764
No 235
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=65.00 E-value=88 Score=28.40 Aligned_cols=92 Identities=12% Similarity=0.040 Sum_probs=58.0
Q ss_pred ccEEeeeCcccc--cCChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE--EecCCcc
Q 029925 54 VDGLKFSGGSHS--LMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI--ELNVGSL 125 (185)
Q Consensus 54 ID~lKfg~GTs~--l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~I--EISdGti 125 (185)
+..+|.+..-.. ..+.+.|.+-.++++++|..+.. + ...|. . .+++.++.+++.|.... -+|...-
T Consensus 181 a~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v~~H~e~~~~~e~---~---av~~~~~~a~~~g~r~~i~H~ss~~~ 254 (415)
T cd01297 181 ALGISTGLAYAPRLYAGTAELVALARVAARYGGVYQTHVRYEGDSIL---E---ALDELLRLGRETGRPVHISHLKSAGA 254 (415)
T ss_pred CeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEEEEEECcccccHH---H---HHHHHHHHHHHhCCCEEEEEEecCCC
Confidence 456775531121 46778899999999999998864 2 33332 2 57777888888776432 2222111
Q ss_pred --cCChhHHHHHHHHHHHCCCeeccccc
Q 029925 126 --EIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
.=...+..++|+++++.|..|..|+-
T Consensus 255 ~~~~~~~~~l~~i~~a~~~G~~v~~e~~ 282 (415)
T cd01297 255 PNWGKIDRLLALIEAARAEGLQVTADVY 282 (415)
T ss_pred cccchHHHHHHHHHHHHHhCCcEEEEeC
Confidence 01123347889999999998877643
No 236
>PRK09389 (R)-citramalate synthase; Provisional
Probab=64.88 E-value=14 Score=35.06 Aligned_cols=96 Identities=18% Similarity=0.157 Sum_probs=71.2
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~ 110 (185)
.++..+++ | +|.+-+...+|-++-+ +.+.+-|+.++++|..|..+- |.+...+++.+.+.++.+
T Consensus 78 di~~a~~~-g--~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~--ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 78 DIDAALEC-D--VDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG--EDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHHhC-C--cCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE--eeCCCCCHHHHHHHHHHH
Confidence 44444443 3 5778888888766422 346667889999998766531 334444555677788888
Q ss_pred HHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 111 KQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 111 k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.+.|.+.|-+.|-.--+.+.+-.++|+.+++.
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~ 184 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSEL 184 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999875
No 237
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=64.76 E-value=18 Score=35.88 Aligned_cols=52 Identities=15% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHcCCCEEEecCCcc-------------------cC-------------ChhHHHHHHHHHHHCCCeeccccccc
Q 029925 106 YVEDCKQVGFDTIELNVGSL-------------------EI-------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti-------------------~i-------------~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
-|.++|+||+++|+++==+- .+ +.++..++|+.+.++|++|+-.+=..
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VIlDvV~N 268 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVILDVVYN 268 (688)
T ss_pred hhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEEEEECcC
Confidence 37788999999999864221 11 35688999999999999997666555
Q ss_pred cCCC
Q 029925 154 FNKS 157 (185)
Q Consensus 154 ~~~~ 157 (185)
+...
T Consensus 269 Ht~~ 272 (688)
T TIGR02100 269 HTAE 272 (688)
T ss_pred CccC
Confidence 4443
No 238
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=64.25 E-value=8 Score=33.37 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=29.7
Q ss_pred eeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
|=|--++-+|+++.|++.++++|+||..+-. ... -=.+-+.-++++|.|.|-|-
T Consensus 155 KDGkslFdfm~~e~l~eFvd~Ah~hGL~~Al--------AGs--~~~ehlp~l~eig~DivGvR 208 (235)
T COG1891 155 KDGKSLFDFMDEEELEEFVDLAHEHGLEVAL--------AGS--LKFEHLPILKEIGPDIVGVR 208 (235)
T ss_pred ccchhHHhhhcHHHHHHHHHHHHHcchHHHh--------ccc--cccccchHHHHhCCCeeeec
Confidence 4444445566667777777777777754433 221 11122344666777766553
No 239
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=64.19 E-value=30 Score=30.50 Aligned_cols=70 Identities=29% Similarity=0.314 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC--hhH----HH---HHHHH
Q 029925 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP--EET----LL---RYVRL 138 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~--~~~----r~---~lI~~ 138 (185)
..+.|++.|+.+|+.||.|+. | =+| -.+-++.++++|-++||+-.|...-. .++ .. ..-+.
T Consensus 108 ~~~~l~~~i~~l~~~gI~VSL---F-----iDP--~~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~~i~~aa~~ 177 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGIEVSL---F-----IDA--DKDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQRIVKASVH 177 (237)
T ss_pred CHHHHHHHHHHHHHCCCEEEE---E-----eCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHHH
Confidence 456799999999999999984 1 121 24556779999999999999887432 212 22 23345
Q ss_pred HHHCCCeec
Q 029925 139 VKSAGLKAK 147 (185)
Q Consensus 139 ~~~~Gf~v~ 147 (185)
+++.|+.|-
T Consensus 178 A~~lGL~Vn 186 (237)
T TIGR00559 178 AHSLGLKVN 186 (237)
T ss_pred HHHcCCEEe
Confidence 667788883
No 240
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=64.09 E-value=63 Score=28.04 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=49.8
Q ss_pred hHHHHHHHhhccc--ccEEeeeC--------cccccCChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHH
Q 029925 41 NVLEDIFESMGQF--VDGLKFSG--------GSHSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVE 108 (185)
Q Consensus 41 ~~~eDlLe~ag~y--ID~lKfg~--------GTs~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~~yl~ 108 (185)
..+.+..+.+-++ .|+|=+-. |.......+.+.+-++-.+++ ++++..= +. +.+.+.+..+
T Consensus 104 ~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~-------~~~~~~~~a~ 176 (301)
T PRK07259 104 EEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTP-------NVTDIVEIAK 176 (301)
T ss_pred HHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCC-------CchhHHHHHH
Confidence 3444444444455 67775511 555666777888888888887 6665541 11 1124567778
Q ss_pred HHHHcCCCEEEecCCcc
Q 029925 109 DCKQVGFDTIELNVGSL 125 (185)
Q Consensus 109 ~~k~lGF~~IEISdGti 125 (185)
.+.+.|.|.|.++|.+.
T Consensus 177 ~l~~~G~d~i~~~nt~~ 193 (301)
T PRK07259 177 AAEEAGADGLSLINTLK 193 (301)
T ss_pred HHHHcCCCEEEEEcccc
Confidence 88999999999977554
No 241
>PLN00196 alpha-amylase; Provisional
Probab=64.03 E-value=21 Score=33.43 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCEEEecC--------Cc-----ccCC------hhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 103 FKEYVEDCKQVGFDTIELNV--------GS-----LEIP------EETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISd--------Gt-----i~i~------~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+.+=+.++++|||++|-|+- |. -++. .++..++|+.+.++|++|...+=..+..
T Consensus 46 i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~~~D~y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDvV~NH~~ 118 (428)
T PLN00196 46 LMGKVDDIAAAGITHVWLPPPSHSVSEQGYMPGRLYDLDASKYGNEAQLKSLIEAFHGKGVQVIADIVINHRT 118 (428)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccCCCCcccCCCHHHHHHHHHHHHHCCCEEEEEECccCcc
Confidence 44557788999999998873 22 2353 2688999999999999996665555444
No 242
>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.
Probab=63.78 E-value=64 Score=28.86 Aligned_cols=97 Identities=10% Similarity=0.112 Sum_probs=62.1
Q ss_pred HHHHHH--hhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec----CccHHHHHHHhCCchHHHHHHHHHHcCCC
Q 029925 43 LEDIFE--SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (185)
Q Consensus 43 ~eDlLe--~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~GtlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (185)
++++|+ ..-+|+..+.++.-...+.|.-+-.+.++.++++|+.++ .-+.-|. . +.+.+=++.+++.|+.
T Consensus 161 L~~ll~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~~h~dh~~Ei---~--d~~~~ai~~L~~~Gi~ 235 (321)
T TIGR03821 161 LDWLLNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLVVHINHANEI---D--AEVADALAKLRNAGIT 235 (321)
T ss_pred HHHHHHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEEeeCCChHhC---c--HHHHHHHHHHHHcCCE
Confidence 666663 234677776665433567777777788888888885333 2123343 1 2566677788888875
Q ss_pred EEEecCCcccC-----ChhHHHHHHHHHHHCCCeec
Q 029925 117 TIELNVGSLEI-----PEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 117 ~IEISdGti~i-----~~~~r~~lI~~~~~~Gf~v~ 147 (185)
. .+-|+-+ +.++..++++.+.+.|.++.
T Consensus 236 v---~~qtvllkgiNDn~~~l~~L~~~l~~~gv~py 268 (321)
T TIGR03821 236 L---LNQSVLLRGVNDNADTLAALSERLFDAGVLPY 268 (321)
T ss_pred E---EecceeeCCCCCCHHHHHHHHHHHHHcCCeeC
Confidence 3 3344333 56778899999998888773
No 243
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=63.76 E-value=78 Score=28.58 Aligned_cols=43 Identities=23% Similarity=0.297 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 102 AFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+.++++|++|++. +-+++. ...+++..+++++++.+.|-.
T Consensus 115 ~~~~~i~~ak~~G~~v~~~l~~s-~~~~~e~l~~~a~~~~~~Ga~ 158 (333)
T TIGR03217 115 VSEQHIGMARELGMDTVGFLMMS-HMTPPEKLAEQAKLMESYGAD 158 (333)
T ss_pred HHHHHHHHHHHcCCeEEEEEEcc-cCCCHHHHHHHHHHHHhcCCC
Confidence 3456666666666653 222222 234556666666666666543
No 244
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=63.76 E-value=65 Score=27.96 Aligned_cols=90 Identities=14% Similarity=0.242 Sum_probs=46.4
Q ss_pred HHHHHHHhhcccccEEeeeCcccc---------cCChhHHHHHHHHHH-hCCceec--CccHHHHHHHhCCchHHHHHHH
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHS---------LMPKPFIEEVVKRAH-QHDVYVS--TGDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~---------l~p~~~L~eKI~l~~-~~gV~v~--~GtlfE~al~qg~~~~~~yl~~ 109 (185)
.+-..|+.+| ||+|=+||.++. ..+.+.+++-..+.+ +..+.+. ++. ...+.++.
T Consensus 24 ~ia~~L~~~G--Vd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-----------~~~~~l~~ 90 (266)
T cd07944 24 AIYRALAAAG--IDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGN-----------DDIDLLEP 90 (266)
T ss_pred HHHHHHHHCC--CCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCC-----------CCHHHHHH
Confidence 4455677777 888988876542 233555666655543 2222111 111 12334555
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.|++.|-|+...-. -+.-.+.|+.+++.|++|
T Consensus 91 a~~~gv~~iri~~~~~~--~~~~~~~i~~ak~~G~~v 125 (266)
T cd07944 91 ASGSVVDMIRVAFHKHE--FDEALPLIKAIKEKGYEV 125 (266)
T ss_pred HhcCCcCEEEEeccccc--HHHHHHHHHHHHHCCCeE
Confidence 55566666665543332 223344566666666654
No 245
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=63.53 E-value=12 Score=30.21 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=57.1
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCcc--HHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCC
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIP 128 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE~al~qg~~~~~~yl~~~k~lGF~---~IEISdGti~i~ 128 (185)
.=+||.+-||..+-|. ...-++-|+++|+++ |. ++.. -.+..+..+.|++.++..+.+ ++.+-+... .+
T Consensus 24 fviiKateG~~y~D~~--~~~~~~~a~~aGl~~--G~Yhy~~~-~~~a~~qA~~f~~~~~~~~~~~~~~lD~E~~~~-~~ 97 (184)
T cd06525 24 VVYIKATEGTTFVDSY--FNENYNGAKAAGLKV--GFYHFLVG-TSNPEEQAENFYNTIKGKKMDLKPALDVEVNFG-LS 97 (184)
T ss_pred EEEEEecCCCcccCHh--HHHHHHHHHHCCCce--EEEEEeeC-CCCHHHHHHHHHHhccccCCCCCeEEEEecCCC-CC
Confidence 3468999999877766 999999999999854 42 3321 011112678899999988765 334433221 23
Q ss_pred h----hHHHHHHHHHHHC-CCee
Q 029925 129 E----ETLLRYVRLVKSA-GLKA 146 (185)
Q Consensus 129 ~----~~r~~lI~~~~~~-Gf~v 146 (185)
. +.-.++++++++. |.++
T Consensus 98 ~~~~~~~~~~f~~~v~~~~G~~~ 120 (184)
T cd06525 98 KDELNDYVLRFIEEFEKLSGLKV 120 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCe
Confidence 2 3345778888888 8887
No 246
>PRK07572 cytosine deaminase; Validated
Probab=63.40 E-value=53 Score=29.90 Aligned_cols=74 Identities=9% Similarity=0.090 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE-EecCCc--ccCChhHHHHHHHHHHHCC
Q 029925 70 PFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI-ELNVGS--LEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~I-EISdGt--i~i~~~~r~~lI~~~~~~G 143 (185)
+.|+.-.++++++|+++.. . +.-+.. . .++.+.+++.+.|+... =++-++ -+.+.....+.++++++.|
T Consensus 191 e~l~~~~~~A~~~g~~v~~H~~e~~~~~~---~--~~~~~~~~~~~~G~~~~v~~~H~~~l~~~~~~~~~~~~~~la~~g 265 (426)
T PRK07572 191 ESVRLLCEIAAERGLRVDMHCDESDDPLS---R--HIETLAAETQRLGLQGRVAGSHLTSMHSMDNYYVSKLIPLMAEAG 265 (426)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCCChhH---H--HHHHHHHHHHHhCCCCCEEEEccchhhcCCHHHHHHHHHHHHHcC
Confidence 5688888888888877643 2 222221 1 34556677778888652 112111 1333456667889999999
Q ss_pred Ceecc
Q 029925 144 LKAKP 148 (185)
Q Consensus 144 f~v~~ 148 (185)
..|.+
T Consensus 266 ~~vv~ 270 (426)
T PRK07572 266 VNAIA 270 (426)
T ss_pred CeEEE
Confidence 88743
No 247
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=63.17 E-value=76 Score=25.75 Aligned_cols=104 Identities=23% Similarity=0.308 Sum_probs=60.8
Q ss_pred ecCCCCCCcchhHHHHHHHhhccc-ccEEeeeCcccccC-----ChhHHHHHHHHHH-hCCceecCccHHHHHHHhCCch
Q 029925 30 RSPHYTLSSSHNVLEDIFESMGQF-VDGLKFSGGSHSLM-----PKPFIEEVVKRAH-QHDVYVSTGDWAEHLIRNGPSA 102 (185)
Q Consensus 30 ~DkG~s~~~g~~~~eDlLe~ag~y-ID~lKfg~GTs~l~-----p~~~L~eKI~l~~-~~gV~v~~GtlfE~al~qg~~~ 102 (185)
+.|++.-. .+..+.+.++.+-+. +|.|-|+----.+. ..+.+++.-+.+. ..+|.+.. + .
T Consensus 6 ~~~s~~~~-~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v----------~--d 72 (220)
T PRK05581 6 IAPSILSA-DFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMV----------E--N 72 (220)
T ss_pred EEcchhcC-CHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeee----------C--C
Confidence 55555444 444565666655554 88888843111121 1223333333332 22222221 1 3
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
..+|++.|.+.|++.|=|-++. +++..+.++.+++.|+++-.-+
T Consensus 73 ~~~~i~~~~~~g~d~v~vh~~~----~~~~~~~~~~~~~~~~~~g~~~ 116 (220)
T PRK05581 73 PDRYVPDFAKAGADIITFHVEA----SEHIHRLLQLIKSAGIKAGLVL 116 (220)
T ss_pred HHHHHHHHHHcCCCEEEEeecc----chhHHHHHHHHHHcCCEEEEEE
Confidence 5668888999999999888874 3566678999999999865433
No 248
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=63.17 E-value=24 Score=28.19 Aligned_cols=77 Identities=18% Similarity=0.204 Sum_probs=48.3
Q ss_pred CCCCceeEecC-CCCCCcchhHHHHHHHhhcccccEEeeeCcccccC-----ChhHHHHHHHHHHhCCceecC-c--cHH
Q 029925 22 RRFGVTEMRSP-HYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLM-----PKPFIEEVVKRAHQHDVYVST-G--DWA 92 (185)
Q Consensus 22 R~~GlTmV~Dk-G~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~-----p~~~L~eKI~l~~~~gV~v~~-G--tlf 92 (185)
|..|....+|- |. +...++ +|... -+|+||+...-..-. ....++..++++|+.|+.|.- | +.
T Consensus 143 ~~~G~~ialddfg~----~~~~~~-~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~gVe~~- 214 (241)
T smart00052 143 RELGVRIALDDFGT----GYSSLS-YLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAEGVETP- 214 (241)
T ss_pred HHCCCEEEEeCCCC----cHHHHH-HHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEecCCCH-
Confidence 45577777764 32 333333 33322 399999986532222 235689999999999997764 5 32
Q ss_pred HHHHHhCCchHHHHHHHHHHcCCCEE
Q 029925 93 EHLIRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 93 E~al~qg~~~~~~yl~~~k~lGF~~I 118 (185)
+-++.|+++|++.+
T Consensus 215 ------------~~~~~l~~~Gi~~~ 228 (241)
T smart00052 215 ------------EQLDLLRSLGCDYG 228 (241)
T ss_pred ------------HHHHHHHHcCCCEE
Confidence 33445777888876
No 249
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=63.17 E-value=9.2 Score=35.30 Aligned_cols=122 Identities=20% Similarity=0.140 Sum_probs=78.0
Q ss_pred CCCCCCCCCceeEecCCCCCCcchhHHHHHHHh----hcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecC-cc
Q 029925 17 RAEKPRRFGVTEMRSPHYTLSSSHNVLEDIFES----MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GD 90 (185)
Q Consensus 17 R~~KPR~~GlTmV~DkG~s~~~g~~~~eDlLe~----ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-Gt 90 (185)
|..|....++|.|.+-.+ .+.++... ||=|.+- +-....+++.+.++++++-+.+.|+ .+.. ||
T Consensus 46 r~~~~~~~~vtyv~n~~i-------n~TN~C~~~C~fCaF~~~~---~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG 115 (370)
T COG1060 46 RRRKRVGDGVTYVVNRNI-------NYTNICVNDCTFCAFYRKP---GDPKAYTLSPEEILEEVREAVKRGITEVLIVGG 115 (370)
T ss_pred HHhhccCCcEEEEEeecC-------CcchhhcCCCCccccccCC---CCccccccCHHHHHHHHHHHHHcCCeEEEEecC
Confidence 345667789999998887 44455443 3334443 3334567777889999999999998 4443 43
Q ss_pred --------HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccc
Q 029925 91 --------WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 91 --------lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
|+|-++.. --++|. .+.-.+|+..||.--+.......+ +.++++++.|+-..|+.|-.
T Consensus 116 ~~p~~~~~y~~~~~~~---ik~~~p-~~~i~a~s~~ei~~~~~~~~~s~~-E~l~~Lk~aGldsmpg~~ae 181 (370)
T COG1060 116 EHPELSLEYYEELFRT---IKEEFP-DLHIHALSAGEILFLAREGGLSYE-EVLKRLKEAGLDSMPGGGAE 181 (370)
T ss_pred cCCCcchHHHHHHHHH---HHHhCc-chhhcccCHHHhHHHHhccCCCHH-HHHHHHHHcCCCcCcCccee
Confidence 33333322 111233 344488888888877666555555 77788889999887766543
No 250
>PRK14706 glycogen branching enzyme; Provisional
Probab=63.12 E-value=16 Score=35.97 Aligned_cols=52 Identities=13% Similarity=0.057 Sum_probs=38.3
Q ss_pred HHHHHHHHHcCCCEEEecCCcc---------------cC-----ChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSL---------------EI-----PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti---------------~i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
++.++++|+||+++||++-=.- .+ +.++..++|+.+.++|++|+-++=....
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~~~~~g~~~~~~~lv~~~H~~gi~VilD~v~nH~ 242 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAPTSRLGTPEDFKYLVNHLHGLGIGVILDWVPGHF 242 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccccccccccCCHHHHHHHHHHHHHCCCEEEEEeccccc
Confidence 4446789999999999864211 11 2478889999999999999776555443
No 251
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=63.05 E-value=19 Score=36.55 Aligned_cols=68 Identities=25% Similarity=0.351 Sum_probs=49.1
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE---E---Ee--------------cCCcc
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT---I---EL--------------NVGSL 125 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~---I---EI--------------SdGti 125 (185)
+++..++-|+.+|+.||.|. +|.=-+.|.. -|+++|++. + |+ -+-+-
T Consensus 516 ~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~a-----------IA~~lGI~~~~v~~g~~l~~~~~~el~~~~~~~~vfA 584 (867)
T TIGR01524 516 PKESTKEAIAALFKNGINVKVLTGDNEIVTAR-----------ICQEVGIDANDFLLGADIEELSDEELARELRKYHIFA 584 (867)
T ss_pred CchhHHHHHHHHHHCCCEEEEEcCCCHHHHHH-----------HHHHcCCCCCCeeecHhhhhCCHHHHHHHhhhCeEEE
Confidence 35568999999999999664 6865454432 378888851 1 01 02344
Q ss_pred cCChhHHHHHHHHHHHCCCee
Q 029925 126 EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+++++|.++|+..++.|-.|
T Consensus 585 r~~Pe~K~~iV~~lq~~G~vV 605 (867)
T TIGR01524 585 RLTPMQKSRIIGLLKKAGHTV 605 (867)
T ss_pred ECCHHHHHHHHHHHHhCCCEE
Confidence 689999999999999999877
No 252
>PLN02361 alpha-amylase
Probab=62.96 E-value=19 Score=33.53 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc-------------C-----ChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLE-------------I-----PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~-------------i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
.+.+=+++++++||++|.|+--+-. + +.++..++|+.+.++|++|...+=+.+.
T Consensus 30 ~i~~kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~V~NH~ 101 (401)
T PLN02361 30 NLEGKVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADIVINHR 101 (401)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCcCCCCCCCCcccccccCcccCCHHHHHHHHHHHHHcCCEEEEEEccccc
Confidence 4555577888888888888653321 1 3468899999999999999776655543
No 253
>PRK03705 glycogen debranching enzyme; Provisional
Probab=62.93 E-value=14 Score=36.58 Aligned_cols=51 Identities=16% Similarity=0.186 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEecCCcc------------------------c----C------ChhHHHHHHHHHHHCCCeeccccc
Q 029925 106 YVEDCKQVGFDTIELNVGSL------------------------E----I------PEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti------------------------~----i------~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
.|+++++||+++||++==+- . . +.++..++|+.+.++|++|+-.+=
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~VIlDvV 263 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIEVILDVV 263 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCEEEEEEc
Confidence 47899999999999842211 0 0 125788999999999999976665
Q ss_pred cccCC
Q 029925 152 VMFNK 156 (185)
Q Consensus 152 ~k~~~ 156 (185)
..+..
T Consensus 264 ~NHt~ 268 (658)
T PRK03705 264 FNHSA 268 (658)
T ss_pred ccCcc
Confidence 55544
No 254
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=62.76 E-value=25 Score=32.55 Aligned_cols=98 Identities=17% Similarity=0.242 Sum_probs=70.2
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc---cHHHHHHHh--C-
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRN--G- 99 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~q--g- 99 (185)
+-.|-|=.+ ...--|..+...+|-+-+-=|. +-.++.+++.++.|+++||++--| |-+|.-+.+ |
T Consensus 73 iPlVADIHF-------d~~lAl~a~~~g~dkiRINPGN--ig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~ 143 (346)
T TIGR00612 73 VPLVADIHF-------DYRLAALAMAKGVAKVRINPGN--IGFRERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGD 143 (346)
T ss_pred CCEEEeeCC-------CcHHHHHHHHhccCeEEECCCC--CCCHHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCC
Confidence 445555555 2445577788889999987776 444778999999999999988765 433443333 1
Q ss_pred C------chHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 029925 100 P------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (185)
Q Consensus 100 ~------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (185)
+ .+.-++++.|.++||+-|=||--+-+.+.--.
T Consensus 144 ~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ 182 (346)
T TIGR00612 144 ATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVA 182 (346)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHH
Confidence 1 24567899999999999999987776665443
No 255
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=62.74 E-value=14 Score=30.75 Aligned_cols=42 Identities=24% Similarity=0.322 Sum_probs=26.3
Q ss_pred HHHHHHH-HHHcCCCE-----EEecC-Cccc----CChhHHHHHHHHHHHCCC
Q 029925 103 FKEYVED-CKQVGFDT-----IELNV-GSLE----IPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 103 ~~~yl~~-~k~lGF~~-----IEISd-Gti~----i~~~~r~~lI~~~~~~Gf 144 (185)
++.+.+. ++++||+. +|+.+ |.++ ...+.|..+++..++.|.
T Consensus 93 ~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~ 145 (203)
T TIGR02137 93 FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY 145 (203)
T ss_pred hHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCC
Confidence 4444432 56677763 56666 5443 556778888888877774
No 256
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=62.70 E-value=99 Score=26.49 Aligned_cols=101 Identities=18% Similarity=0.167 Sum_probs=66.5
Q ss_pred HHHHHHHhhcccccEEeeeCcccc--------cCChhHHHHHHHHHHhC-CceecCcc----HHHHHHHhCC--------
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHS--------LMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLIRNGP-------- 100 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~--------l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al~qg~-------- 100 (185)
..+.+++.-+++|| +|.+++. -...+.+...|+.+++. +++++--| -+|.|+..+.
T Consensus 29 ~a~~~~~~GAdiID---vG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~iINdis~ 105 (258)
T cd00423 29 HARRMVEEGADIID---IGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADIINDVSG 105 (258)
T ss_pred HHHHHHHCCCCEEE---ECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCEEEeCCC
Confidence 34455555555555 6887762 22224577788888776 99998875 7888887642
Q ss_pred chH-HHHHHHHHHcCCCEEEecCCcccC--------C------hhHHHHHHHHHHHCCCe
Q 029925 101 SAF-KEYVEDCKQVGFDTIELNVGSLEI--------P------EETLLRYVRLVKSAGLK 145 (185)
Q Consensus 101 ~~~-~~yl~~~k~lGF~~IEISdGti~i--------~------~~~r~~lI~~~~~~Gf~ 145 (185)
... ++.++.+++.|...|=.-...... + .+...+.|+++.+.|+.
T Consensus 106 ~~~~~~~~~l~~~~~~~vV~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~ 165 (258)
T cd00423 106 GRGDPEMAPLAAEYGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIP 165 (258)
T ss_pred CCCChHHHHHHHHcCCCEEEECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHHHcCCC
Confidence 122 788999999999998876332222 1 24455778889999964
No 257
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=62.68 E-value=75 Score=28.30 Aligned_cols=30 Identities=13% Similarity=0.281 Sum_probs=15.0
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCC
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHD 83 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~g 83 (185)
|.-+-|++|--.+.+.+.|.+-++.+++.+
T Consensus 137 I~~VilSGGDPl~~~~~~L~~ll~~l~~i~ 166 (321)
T TIGR03822 137 IWEVILTGGDPLVLSPRRLGDIMARLAAID 166 (321)
T ss_pred ccEEEEeCCCcccCCHHHHHHHHHHHHhCC
Confidence 344445555555554444555555555443
No 258
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=62.66 E-value=28 Score=30.01 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=10.0
Q ss_pred CCCceeEecCCC
Q 029925 23 RFGVTEMRSPHY 34 (185)
Q Consensus 23 ~~GlTmV~DkG~ 34 (185)
..|+|.|+|.|-
T Consensus 53 ~~GvTtv~d~g~ 64 (342)
T cd01299 53 RAGFTTVRDAGG 64 (342)
T ss_pred hCCCcEEEeCCC
Confidence 349999999984
No 259
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=62.66 E-value=83 Score=27.52 Aligned_cols=95 Identities=20% Similarity=0.271 Sum_probs=69.9
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..+..+|+... +|.|=.| ++..+....+.=.+|.+.|+.++.= .|.+ .=.+++++.-+.||+++=|
T Consensus 76 e~L~~~l~~l~--~d~iv~G----aI~s~yqk~rve~lc~~lGl~~~~P-----LWg~---d~~ell~e~~~~Gf~~~Iv 141 (223)
T COG2102 76 EELKEALRRLK--VDGIVAG----AIASEYQKERVERLCEELGLKVYAP-----LWGR---DPEELLEEMVEAGFEAIIV 141 (223)
T ss_pred HHHHHHHHhCc--ccEEEEc----hhhhHHHHHHHHHHHHHhCCEEeec-----ccCC---CHHHHHHHHHHcCCeEEEE
Confidence 44555566666 8888777 4888998999999999999987742 2334 3567888899999999999
Q ss_pred cCCcccCCh---------hHHHHHHHHHHHCCCeeccc
Q 029925 121 NVGSLEIPE---------ETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 121 SdGti~i~~---------~~r~~lI~~~~~~Gf~v~~E 149 (185)
+.-..-++. +...++....++.|+.+.-|
T Consensus 142 ~Vsa~gL~~~~lGr~i~~~~~e~l~~l~~~ygi~~~GE 179 (223)
T COG2102 142 AVSAEGLDESWLGRRIDREFLEELKSLNRRYGIHPAGE 179 (223)
T ss_pred EEeccCCChHHhCCccCHHHHHHHHHHHHhcCCCccCC
Confidence 988886665 44455666667778887443
No 260
>PLN02960 alpha-amylase
Probab=62.66 E-value=19 Score=37.12 Aligned_cols=54 Identities=15% Similarity=0.187 Sum_probs=39.6
Q ss_pred HHHHHHHHHcCCCEEEecCCccc--------------------CChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLE--------------------IPEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~--------------------i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
++.+.++++||+++||++-=+-. =+.++..++|+.+.++|++|+-++=......
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~yfa~~~~yGtp~dfk~LVd~aH~~GI~VILDvV~NH~~~ 493 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNFFAVSSRFGTPDDFKRLVDEAHGLGLLVFLDIVHSYAAA 493 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcccccCCHHHHHHHHHHHHHCCCEEEEEecccccCC
Confidence 34588999999999999743210 1356788999999999999977664444433
No 261
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.62 E-value=27 Score=27.57 Aligned_cols=95 Identities=17% Similarity=0.235 Sum_probs=47.0
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
|...+.-+|+.+|--+ +=+|-. .| ..+-++.+.++++.+-. -.+.- +....+.+.++.+++.|+..
T Consensus 19 G~~iv~~~lr~~G~eV--i~LG~~----vp---~e~i~~~a~~~~~d~V~lS~~~~----~~~~~~~~~~~~L~~~~~~~ 85 (137)
T PRK02261 19 GNKILDRALTEAGFEV--INLGVM----TS---QEEFIDAAIETDADAILVSSLYG----HGEIDCRGLREKCIEAGLGD 85 (137)
T ss_pred HHHHHHHHHHHCCCEE--EECCCC----CC---HHHHHHHHHHcCCCEEEEcCccc----cCHHHHHHHHHHHHhcCCCC
Confidence 4555666666665332 223321 11 44555555565553321 11111 11113455566666666643
Q ss_pred EE-ecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 118 IE-LNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 118 IE-ISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+- +=-|.+.++..++.+.++++++.||.+
T Consensus 86 ~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~ 115 (137)
T PRK02261 86 ILLYVGGNLVVGKHDFEEVEKKFKEMGFDR 115 (137)
T ss_pred CeEEEECCCCCCccChHHHHHHHHHcCCCE
Confidence 33 334556666666666666777777653
No 262
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=62.46 E-value=23 Score=30.87 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=46.0
Q ss_pred ChhHHHHHHHHHHhCCceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCC---EEEecCCcccCChhHHHHHHHHHHH
Q 029925 68 PKPFIEEVVKRAHQHDVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFD---TIELNVGSLEIPEETLLRYVRLVKS 141 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~---~IEISdGti~i~~~~r~~lI~~~~~ 141 (185)
+.+.+++.++.++++|+++.. . +--|. + ..+++.++.+.+.|+. .|+=....-+.+.++..+.++++++
T Consensus 187 s~e~l~~~~~~A~~~g~~v~~H~~e~~~~~---~--~~~~~~~~~~~~~g~~~~~~i~H~~~~~~~~~~~~~~~~~~l~~ 261 (398)
T cd01293 187 GEESLDTLFELAQEHGLDIDLHLDETDDPG---S--RTLEELAEEAERRGMQGRVTCSHATALGSLPEAEVSRLADLLAE 261 (398)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEeCCCCCcc---h--hHHHHHHHHHHHhCCCCCEEeeecchhhcCCHHHHHHHHHHHHH
Confidence 456788888888888876654 2 21110 1 1345556667777763 2222222234456666788999999
Q ss_pred CCCeecc
Q 029925 142 AGLKAKP 148 (185)
Q Consensus 142 ~Gf~v~~ 148 (185)
.|..|.+
T Consensus 262 ~g~~v~~ 268 (398)
T cd01293 262 AGISVVS 268 (398)
T ss_pred cCCeEEe
Confidence 9988744
No 263
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.46 E-value=17 Score=24.65 Aligned_cols=46 Identities=20% Similarity=0.348 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHcCCCEEEecCCc-----------ccCC-hhHHHHHHHHHHHCCCee
Q 029925 100 PSAFKEYVEDCKQVGFDTIELNVGS-----------LEIP-EETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISdGt-----------i~i~-~~~r~~lI~~~~~~Gf~v 146 (185)
|..+.++++...+ |.+.+||+-.. ++.+ .+...++++.+++.|+.+
T Consensus 9 PG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~~G~~~ 66 (68)
T cd04885 9 PGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEALGYPY 66 (68)
T ss_pred CCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence 4477888888877 88888765432 2333 378889999999999875
No 264
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=62.20 E-value=34 Score=29.22 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=8.2
Q ss_pred hHHHHHHHHHHHCCCee
Q 029925 130 ETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (185)
+++.+.|+.+++.|+.|
T Consensus 158 ~~~~~ai~~l~~~Gi~v 174 (296)
T TIGR00433 158 DDRVDTLENAKKAGLKV 174 (296)
T ss_pred HHHHHHHHHHHHcCCEE
Confidence 44444455555555544
No 265
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.16 E-value=22 Score=31.79 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=24.4
Q ss_pred cCChhHHHHHHHHHHHCCCeeccccccc
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
-.+.++-.++++.|+++|..|+||+-.-
T Consensus 64 ~yT~~di~elv~yA~~rgI~vIPEId~P 91 (311)
T cd06570 64 YYTQEQIREVVAYARDRGIRVVPEIDVP 91 (311)
T ss_pred ccCHHHHHHHHHHHHHcCCEEEEeecCc
Confidence 3789999999999999999999988643
No 266
>PRK08417 dihydroorotase; Provisional
Probab=61.99 E-value=1.2e+02 Score=27.32 Aligned_cols=30 Identities=17% Similarity=0.123 Sum_probs=23.8
Q ss_pred cCChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
-++..+=.++|+.+++.|..|..|+-...-
T Consensus 202 hvS~~~~~~~i~~ak~~g~~vt~ev~ph~L 231 (386)
T PRK08417 202 TLALPRSLELLDKFKSEGEKLLKEVSIHHL 231 (386)
T ss_pred eCCCHHHHHHHHHHHHCCCCEEEEechHHH
Confidence 467777789999999999999888765543
No 267
>PRK09248 putative hydrolase; Validated
Probab=61.77 E-value=20 Score=30.16 Aligned_cols=16 Identities=31% Similarity=0.480 Sum_probs=7.8
Q ss_pred HHHHHHHHHHcCCCEE
Q 029925 103 FKEYVEDCKQVGFDTI 118 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~I 118 (185)
+++-++.+++.||+.+
T Consensus 203 ~~~~~~~~~~~g~~~~ 218 (246)
T PRK09248 203 FEEALKILDEVGFPEE 218 (246)
T ss_pred HHHHHHHHHHcCCCHH
Confidence 4444455555555544
No 268
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=61.68 E-value=43 Score=29.79 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=49.9
Q ss_pred CChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 67 MPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
++.+.|++-|+..++.-=.++ | .++ +... ..++.++.+.+.|.+.|.++-|. |. ++|+++++.|.+
T Consensus 45 ~~~~~l~~~i~~~~~~t~~pf-gvn~~---~~~~--~~~~~~~~~~~~~v~~v~~~~g~---p~----~~i~~lk~~g~~ 111 (307)
T TIGR03151 45 APPDVVRKEIRKVKELTDKPF-GVNIM---LLSP--FVDELVDLVIEEKVPVVTTGAGN---PG----KYIPRLKENGVK 111 (307)
T ss_pred CCHHHHHHHHHHHHHhcCCCc-EEeee---cCCC--CHHHHHHHHHhCCCCEEEEcCCC---cH----HHHHHHHHcCCE
Confidence 456779999999987421111 2 221 1122 56788898999999999998663 32 589999999999
Q ss_pred eccccc
Q 029925 146 AKPKFA 151 (185)
Q Consensus 146 v~~E~G 151 (185)
|.+.++
T Consensus 112 v~~~v~ 117 (307)
T TIGR03151 112 VIPVVA 117 (307)
T ss_pred EEEEcC
Confidence 876654
No 269
>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]
Probab=61.64 E-value=14 Score=32.11 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=41.4
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHH
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH 80 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~ 80 (185)
|=.=+|+- .-....++++..++++|++|.|+=..+.+..++|++-.+..|
T Consensus 14 livaLD~~-----~~~~~~~~~~~~~~~~~~~Kvg~~l~~~~g~~~~~el~~~~~ 63 (240)
T COG0284 14 LIVALDVP-----TEEEALAFVDKLGPTVDFVKVGKPLVAFFGADILEELKARGK 63 (240)
T ss_pred eEEEECCC-----CHHHHHHHHHHhhccccEEEEchHHHHhccHHHHHHHHHhCC
Confidence 55556665 455668899999999999999999999999998998888875
No 270
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=61.63 E-value=42 Score=32.16 Aligned_cols=111 Identities=9% Similarity=0.072 Sum_probs=79.0
Q ss_pred CCceeEecCCCCCCcch-----hHHHHHHHhh-cccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC--c-cHHHH
Q 029925 24 FGVTEMRSPHYTLSSSH-----NVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--G-DWAEH 94 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~-----~~~eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--G-tlfE~ 94 (185)
+-+.|++= |..+. |. +-.+-+++.| .+-||++-+.- .+..-+.++.-|+.++++|..+.. + |.--
T Consensus 85 t~lqmLlR-G~n~v-gy~~ypddvv~~fv~~a~~~Gidi~Rifd---~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp- 158 (468)
T PRK12581 85 TRLQMLLR-GQNLL-GYRHYADDIVDKFISLSAQNGIDVFRIFD---ALNDPRNIQQALRAVKKTGKEAQLCIAYTTSP- 158 (468)
T ss_pred Cceeeeec-ccccc-CccCCcchHHHHHHHHHHHCCCCEEEEcc---cCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCC-
Confidence 45555554 64333 22 3344556665 55699988875 667778899999999999997542 2 2200
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 95 LIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
....+.+.+..+.+.++|.+.|=|.|-.--+.+++-.++|+.+++.
T Consensus 159 --~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~ 204 (468)
T PRK12581 159 --VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM 204 (468)
T ss_pred --cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc
Confidence 1111236667778889999999999999999999999999999885
No 271
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=61.55 E-value=20 Score=35.62 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=55.4
Q ss_pred hhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec---CccHHH---HHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS---TGDWAE---HLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~---~GtlfE---~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
+++.-+|.-.+-|....- . ...+-...+ .|-+| .|+|-- .=+.+ -.++.+.+|+++||++||+.-
T Consensus 116 ~aS~v~~~~~y~W~d~~~-~---~~~~~~~~e--~~vIYElHvGs~~~~~~~~~~e---~a~~llpYl~elG~T~IELMP 186 (628)
T COG0296 116 TASQVVDLPDYEWQDERW-D---RAWRGRFWE--PIVIYELHVGSFTPDRFLGYFE---LAIELLPYLKELGITHIELMP 186 (628)
T ss_pred CcceecCCCCcccccccc-c---ccccCCCCC--CceEEEEEeeeccCCCCcCHHH---HHHHHhHHHHHhCCCEEEEcc
Confidence 444555555566664433 1 122222222 44444 487644 11222 356778999999999999852
Q ss_pred -------------Ccc-------cCChhHHHHHHHHHHHCCCeecc
Q 029925 123 -------------GSL-------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 123 -------------Gti-------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
|+. ==++++..++|..+-++|+-|+-
T Consensus 187 v~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViL 232 (628)
T COG0296 187 VAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVIL 232 (628)
T ss_pred cccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEE
Confidence 111 12578899999999999999944
No 272
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=61.37 E-value=91 Score=33.46 Aligned_cols=100 Identities=12% Similarity=0.126 Sum_probs=73.9
Q ss_pred HHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHh----CCceecCcc----HHHHHHHh--------------CCc
Q 029925 44 EDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQ----HDVYVSTGD----WAEHLIRN--------------GPS 101 (185)
Q Consensus 44 eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~----~gV~v~~Gt----lfE~al~q--------------g~~ 101 (185)
++.++.-+++||+ +.|...+..++.+++.+.+... .+|+++.-| -+|.++.. +..
T Consensus 391 ~~qve~GA~iIDV---n~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~G~~IINSIs~~~~~~ 467 (1229)
T PRK09490 391 RQQVENGAQIIDI---NMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQGKGIVNSISLKEGEE 467 (1229)
T ss_pred HHHHHCCCCEEEE---CCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcCCCCEEEeCCCCCCCc
Confidence 3344456777776 7888888888889999999886 589999863 68999975 223
Q ss_pred hHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHH----HHHH-CCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVR----LVKS-AGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~----~~~~-~Gf~v 146 (185)
++++.+..|+++|...|=.-- .=+.-+.++|.++.+ .+.+ .||..
T Consensus 468 ~~~~~~~l~~kyga~vV~m~~de~G~~~t~e~r~~ia~r~~~~~~~~~Gi~~ 519 (1229)
T PRK09490 468 KFIEHARLVRRYGAAVVVMAFDEQGQADTRERKIEICKRAYDILTEEVGFPP 519 (1229)
T ss_pred cHHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 688899999999999887632 237778888887744 4443 67764
No 273
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=61.25 E-value=21 Score=29.48 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC--CCeecc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--GLKAKP 148 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--Gf~v~~ 148 (185)
.+++|++.++++|++.|-|+| .-+++.+++. ++++..
T Consensus 3 ~~~~~l~~l~~~g~dgi~v~~----------~g~~~~~k~~~~~~~i~~ 41 (233)
T PF01136_consen 3 ELEKYLDKLKELGVDGILVSN----------PGLLELLKELGPDLKIIA 41 (233)
T ss_pred HHHHHHHHHHhCCCCEEEEcC----------HHHHHHHHHhCCCCcEEE
Confidence 689999999999999999998 5778888888 556543
No 274
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=61.20 E-value=11 Score=33.37 Aligned_cols=84 Identities=15% Similarity=0.123 Sum_probs=55.2
Q ss_pred CChhHHHHHHHHHHhCCceecCc--cH--HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 67 MPKPFIEEVVKRAHQHDVYVSTG--DW--AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~G--tl--fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|..+.+++.++.|+++||.|.|= ++ .|.++.. ++|...|. .+.+.+++.+..++=.++|+.+-++
T Consensus 57 yT~~ei~ei~~yA~~~gI~vIPeid~pGH~~~~l~~-----~~~~~l~~------~~~~~~~l~~~~~~t~~fi~~li~e 125 (301)
T cd06565 57 YTKEEIREIDDYAAELGIEVIPLIQTLGHLEFILKH-----PEFRHLRE------VDDPPQTLCPGEPKTYDFIEEMIRQ 125 (301)
T ss_pred cCHHHHHHHHHHHHHcCCEEEecCCCHHHHHHHHhC-----cccccccc------cCCCCCccCCCChhHHHHHHHHHHH
Confidence 55667999999999999999983 43 3333332 24433321 2335788888888777777766554
Q ss_pred CCeeccccccccCCCCCCCccccccc
Q 029925 143 GLKAKPKFAVMFNKSDIPSDRDRAFG 168 (185)
Q Consensus 143 Gf~v~~E~G~k~~~~di~~g~d~~~~ 168 (185)
=. --|+..-+.-|+||++.
T Consensus 126 v~-------~~f~s~~~HIG~DE~~~ 144 (301)
T cd06565 126 VL-------ELHPSKYIHIGMDEAYD 144 (301)
T ss_pred HH-------HhCCCCeEEECCCcccc
Confidence 11 12446778889999884
No 275
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=60.82 E-value=25 Score=36.31 Aligned_cols=56 Identities=16% Similarity=0.078 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
.+.+-+.++++|||++|.+|-=+-.. +.++..++|+.++++|++|.-.+=.+..+.
T Consensus 21 ~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp~lGt~e~f~~Lv~aah~~Gi~VIlDiV~NH~~~ 96 (879)
T PRK14511 21 DAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINPELGGEEGLRRLAAALRAHGMGLILDIVPNHMAV 96 (879)
T ss_pred HHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCCCCCCHHHHHHHHHHHHHCCCEEEEEeccccccC
Confidence 35566778888999999887532211 458899999999999999977666655544
No 276
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=60.78 E-value=23 Score=31.18 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCc----hHHHHHHHHHHcCCCEEEecCCc
Q 029925 69 KPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPS----AFKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~----~~~~yl~~~k~lGF~~IEISdGt 124 (185)
...+.+.|+.+|+.|++|.. |||-.......+. -++...+.+++.|||.|.|.=-.
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~ 120 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISIGGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLES 120 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEEeCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEeccc
Confidence 45689999999999997775 6543221111111 35566677888999999986433
No 277
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=60.78 E-value=37 Score=26.58 Aligned_cols=92 Identities=12% Similarity=-0.018 Sum_probs=65.5
Q ss_pred HHHHHH-hhcccccEEeeeCcccccCChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 43 LEDIFE-SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 43 ~eDlLe-~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
..++-. ..+++| +-|-.+ +++++.+ |.+ .+++.||. +..|-..+.|+.+- ...+.++||+.+=
T Consensus 53 ~~~l~~~~~~~~v-i~K~~~--saf~~t~-L~~---~L~~~gi~~lii~G~~T~~CV~~T-------a~~a~~~g~~v~v 118 (157)
T cd01012 53 VPELREVFPDAPV-IEKTSF--SCWEDEA-FRK---ALKATGRKQVVLAGLETHVCVLQT-------ALDLLEEGYEVFV 118 (157)
T ss_pred hHHHHhhCCCCCc-eecccc--cCcCCHH-HHH---HHHhcCCCEEEEEEeeccHHHHHH-------HHHHHHCCCEEEE
Confidence 444443 345544 568774 4455543 444 45688993 33487889988874 2346678999999
Q ss_pred ecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 120 LNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 120 ISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
++|++-+.+++.....++..+..|-+|.+
T Consensus 119 ~~Da~as~~~~~h~~al~~~~~~~~~v~~ 147 (157)
T cd01012 119 VADACGSRSKEDHELALARMRQAGAVLTT 147 (157)
T ss_pred EeeCCCCCCHHHHHHHHHHHHHCCCEEee
Confidence 99999999999999999999998877643
No 278
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=60.70 E-value=33 Score=31.96 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=75.2
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C---
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G--- 99 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g--- 99 (185)
|.-++=|-+..-.+..++.+++..-.+.+.-.-.-=|.-.-|..+=.+|++.++++|| .++.| ++=+..+.. |
T Consensus 117 ~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~~ 196 (449)
T PRK09058 117 AVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRKD 196 (449)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCCC
Confidence 3445555433226789999999988876532100012223345556799999999999 78889 677766643 2
Q ss_pred -CchHHHHHHHHHHcCCCEEEecC--CcccCChhHHHHHHHHHHHCCCe
Q 029925 100 -PSAFKEYVEDCKQVGFDTIELNV--GSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 100 -~~~~~~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.+.+.+.++.+++.||..|-++= |.=.=+.+++.+-++.+.+.+..
T Consensus 197 ~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~~~l~~~~~l~~~ 245 (449)
T PRK09058 197 DREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQQDLAIVRDLGLD 245 (449)
T ss_pred CHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHHHHHHHHHhcCCC
Confidence 23466778888889987765432 22233456666777777776644
No 279
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=60.64 E-value=37 Score=32.77 Aligned_cols=110 Identities=14% Similarity=0.080 Sum_probs=81.4
Q ss_pred CCceeEe----cCCCCCCcchhHHHHHHHhhc-ccccEEeeeCcccccCChhHHHHHHHHHHhCCcee----c-CccHHH
Q 029925 24 FGVTEMR----SPHYTLSSSHNVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV----S-TGDWAE 93 (185)
Q Consensus 24 ~GlTmV~----DkG~s~~~g~~~~eDlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v----~-~GtlfE 93 (185)
+-+.|.. -+||... .-+-.+..++.|. .-||++-+.-..+-+ +.++.-|+.++++|..+ | +++-
T Consensus 77 t~lqmL~Rg~N~vGy~~y-~ddvv~~fv~~a~~~Gidi~RIfd~lndv---~nl~~ai~~vk~ag~~~~~~i~yt~sp-- 150 (499)
T PRK12330 77 SRLQMLLRGQNLLGYRHY-EDEVVDRFVEKSAENGMDVFRVFDALNDP---RNLEHAMKAVKKVGKHAQGTICYTVSP-- 150 (499)
T ss_pred CeEEEEEcccccCCccCc-chhHHHHHHHHHHHcCCCEEEEEecCChH---HHHHHHHHHHHHhCCeEEEEEEEecCC--
Confidence 3455555 3566444 4445566676654 559999998876666 55888999999999854 2 2321
Q ss_pred HHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 94 HLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 94 ~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
...++.+-++.+.+.+.|.+.|=|.|-.--+.+++-.++|+.+++.
T Consensus 151 ---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~ 196 (499)
T PRK12330 151 ---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEA 196 (499)
T ss_pred ---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHh
Confidence 2344567777788889999999999999999999999999999986
No 280
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=60.31 E-value=33 Score=31.91 Aligned_cols=92 Identities=23% Similarity=0.313 Sum_probs=60.5
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc---cHHHHHHHhC---
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG---DWAEHLIRNG--- 99 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G---tlfE~al~qg--- 99 (185)
+-.|-|-.+ -++.+-+..+.. +|-+.+-=|. +-.++.+++.++.|+++|+++--| |-+|.-+.+.
T Consensus 75 vPLVaDiHf----~~rla~~~~~~g---~~k~RINPGN--ig~~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~ 145 (361)
T COG0821 75 VPLVADIHF----DYRLALEAAECG---VDKVRINPGN--IGFKDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGG 145 (361)
T ss_pred CCEEEEeec----cHHHHHHhhhcC---cceEEECCcc--cCcHHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcC
Confidence 345556665 222333333322 8989887777 445567999999999999998876 4555544441
Q ss_pred C------chHHHHHHHHHHcCCCEEEecCCccc
Q 029925 100 P------SAFKEYVEDCKQVGFDTIELNVGSLE 126 (185)
Q Consensus 100 ~------~~~~~yl~~~k~lGF~~IEISdGti~ 126 (185)
| .+.=.+.+.|.++||+-|-||--.-+
T Consensus 146 pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sd 178 (361)
T COG0821 146 PTPEALVESALEHAELLEELGFDDIKVSVKASD 178 (361)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCC
Confidence 0 12345678899999999988865543
No 281
>PRK11059 regulatory protein CsrD; Provisional
Probab=60.23 E-value=26 Score=33.60 Aligned_cols=79 Identities=15% Similarity=0.209 Sum_probs=0.0
Q ss_pred CCCCceeEe-cCCCCCCcchhHHHHHHHhhcccccEEeeeCc-----ccccCChhHHHHHHHHHHhCCceecC-ccHHHH
Q 029925 22 RRFGVTEMR-SPHYTLSSSHNVLEDIFESMGQFVDGLKFSGG-----SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEH 94 (185)
Q Consensus 22 R~~GlTmV~-DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~G-----Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~ 94 (185)
|..|....+ |-|.+.. .+.++.++ -+|+||+--. ..--.+...++..+++||+.|+.|.- |
T Consensus 543 ~~~G~~iaiddfG~g~~-s~~~L~~l------~~d~iKid~s~v~~i~~~~~~~~~v~sli~~a~~~~i~viAeg----- 610 (640)
T PRK11059 543 RGLGCRLAVDQAGLTVV-STSYIKEL------NVELIKLHPSLVRNIHKRTENQLFVRSLVGACAGTETQVFATG----- 610 (640)
T ss_pred HHCCCEEEEECCCCCcc-cHHHHHhC------CCCEEEECHHHHhhhhcCchhHHHHHHHHHHHHHCCCeEEEEE-----
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEE
Q 029925 95 LIRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~I 118 (185)
... ++-++.++++|++.+
T Consensus 611 --VEt----~~~~~~l~~lGvd~~ 628 (640)
T PRK11059 611 --VES----REEWQTLQELGVSGG 628 (640)
T ss_pred --eCC----HHHHHHHHHhCCCee
No 282
>PLN02321 2-isopropylmalate synthase
Probab=59.99 E-value=19 Score=35.59 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=64.2
Q ss_pred EEeeeCcccccCCh-----------hHHHHHHHHHHhCCc-eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 029925 56 GLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDV-YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (185)
Q Consensus 56 ~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV-~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (185)
.+-+-..||-++-+ +.+++-|++++++|. .|..+ .|.+..-+++.+-++++.+.+.|.+.|=|.|-
T Consensus 185 ~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs--~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DT 262 (632)
T PLN02321 185 RIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFS--PEDAGRSDPEFLYRILGEVIKAGATTLNIPDT 262 (632)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEe--cccCCCCCHHHHHHHHHHHHHcCCCEEEeccc
Confidence 35555566555322 236678889999987 35554 34444555668888999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHC
Q 029925 124 SLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~ 142 (185)
.--+.+.+-.++|+.++++
T Consensus 263 vG~~~P~~v~~li~~l~~~ 281 (632)
T PLN02321 263 VGYTLPSEFGQLIADIKAN 281 (632)
T ss_pred ccCCCHHHHHHHHHHHHHh
Confidence 9999999999999999876
No 283
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=59.88 E-value=84 Score=27.97 Aligned_cols=117 Identities=15% Similarity=0.097 Sum_probs=70.8
Q ss_pred CCceeEecCCCCCCc-chhHHHHHHHhhcc--cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc--c--HHHHHH
Q 029925 24 FGVTEMRSPHYTLSS-SHNVLEDIFESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--D--WAEHLI 96 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~-g~~~~eDlLe~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G--t--lfE~al 96 (185)
.|++.|+=-|=..++ ....+.++++.... +|..+.++.-+..+.|..+..+.++.++++|+.++-+ + .=|.
T Consensus 135 ~~I~~VilSGGDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el-- 212 (321)
T TIGR03822 135 PEIWEVILTGGDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHAREL-- 212 (321)
T ss_pred CCccEEEEeCCCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhc--
Confidence 366666433322221 23567788877665 2334455543344556556678888888888765544 1 2222
Q ss_pred HhCCchHHHHHHHHHHcCCCEEE---ecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 97 RNGPSAFKEYVEDCKQVGFDTIE---LNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~IE---ISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.+.+-++.+++.|+...= +-.| +.-+.++..++++.+.+.|..+
T Consensus 213 ---~~~~~~ai~~L~~~Gi~v~~q~vLl~g-vNd~~~~l~~l~~~l~~~gv~p 261 (321)
T TIGR03822 213 ---TAEARAACARLIDAGIPMVSQSVLLRG-VNDDPETLAALMRAFVECRIKP 261 (321)
T ss_pred ---CHHHHHHHHHHHHcCCEEEEEeeEeCC-CCCCHHHHHHHHHHHHhcCCee
Confidence 23677788889999974321 1112 2355677899999999999775
No 284
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=59.76 E-value=11 Score=33.40 Aligned_cols=40 Identities=15% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCccc------CChhHHHHHHHHHHHC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLE------IPEETLLRYVRLVKSA 142 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~------i~~~~r~~lI~~~~~~ 142 (185)
.-++++.+.+.|.+.||||.|..+ ++......+.+.+++.
T Consensus 243 ~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~ 288 (336)
T cd02932 243 SVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE 288 (336)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh
Confidence 445666777889999999988532 2233334555565554
No 285
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=59.60 E-value=19 Score=26.64 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=6.6
Q ss_pred HHHHHHHHHcCCC
Q 029925 104 KEYVEDCKQVGFD 116 (185)
Q Consensus 104 ~~yl~~~k~lGF~ 116 (185)
++|.+.++++||+
T Consensus 45 ~~~~~~L~~~Gi~ 57 (101)
T PF13344_consen 45 EEYAKKLKKLGIP 57 (101)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHhcCcC
Confidence 4445555555555
No 286
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=59.53 E-value=40 Score=29.90 Aligned_cols=55 Identities=22% Similarity=0.446 Sum_probs=35.2
Q ss_pred EEeeeCcccccCChhHHHHHHHHHHhCC---c----eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHD---V----YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V----~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
-|-|.+|=-.+.|.+.+++.+++++++| + .+.+ |+++.- +.++.+++.++ .|-||
T Consensus 60 ~i~~~GGEPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~----------~~~~~l~~~~~-~v~iS 122 (370)
T PRK13758 60 SFAFQGGEPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDE----------SWAKFLSENKF-LVGLS 122 (370)
T ss_pred EEEEECCccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCH----------HHHHHHHHcCc-eEEEe
Confidence 4568888888877777889999999886 3 2345 665531 22233445565 66666
No 287
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=59.01 E-value=21 Score=31.40 Aligned_cols=72 Identities=25% Similarity=0.384 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC--hh----HHHH---HHH
Q 029925 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP--EE----TLLR---YVR 137 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~--~~----~r~~---lI~ 137 (185)
-..+.|+..|+.+|++||.|+. | =+| -.+-++.++++|-++||+-.|...-. .+ +..+ .-+
T Consensus 107 ~~~~~l~~~i~~l~~~gI~VSL--F------iDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~~i~~aa~ 176 (234)
T cd00003 107 GQAEKLKPIIERLKDAGIRVSL--F------IDP--DPEQIEAAKEVGADRVELHTGPYANAYDKAEREAELERIAKAAK 176 (234)
T ss_pred cCHHHHHHHHHHHHHCCCEEEE--E------eCC--CHHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHHHHHH
Confidence 3456799999999999999985 1 111 13446679999999999998876333 11 2222 334
Q ss_pred HHHHCCCeecc
Q 029925 138 LVKSAGLKAKP 148 (185)
Q Consensus 138 ~~~~~Gf~v~~ 148 (185)
.+.+.|+.|..
T Consensus 177 ~a~~~GL~VnA 187 (234)
T cd00003 177 LARELGLGVNA 187 (234)
T ss_pred HHHHcCCEEec
Confidence 56677888843
No 288
>PRK10551 phage resistance protein; Provisional
Probab=58.67 E-value=51 Score=31.31 Aligned_cols=116 Identities=10% Similarity=0.123 Sum_probs=69.5
Q ss_pred HHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 029925 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (185)
+..+++..+..-.-+.|-.--..+...+...+.++.+|++|+.+.- | |.-- +.+++++.+|.|
T Consensus 370 l~~~l~~~~~~~~~LvlEItE~~~~~~~~~~~~l~~Lr~~G~~ialDDFGtg~ss-------------l~~L~~l~vD~l 436 (518)
T PRK10551 370 VQRLLASLPADHFQIVLEITERDMVQEEEATKLFAWLHSQGIEIAIDDFGTGHSA-------------LIYLERFTLDYL 436 (518)
T ss_pred HHHHHHhCCCCcceEEEEEechHhcCCHHHHHHHHHHHHCCCEEEEECCCCCchh-------------HHHHHhCCCCEE
Confidence 4445554443333344443333344444567888999999998885 4 2322 233567889999
Q ss_pred EecCCccc-CChh-----HHHHHHHHHHHCCCeeccccccccCC---CCCCCccccccccccc
Q 029925 119 ELNVGSLE-IPEE-----TLLRYVRLVKSAGLKAKPKFAVMFNK---SDIPSDRDRAFGAYVA 172 (185)
Q Consensus 119 EISdGti~-i~~~-----~r~~lI~~~~~~Gf~v~~E~G~k~~~---~di~~g~d~~~~~~~~ 172 (185)
-|+-.++. |..+ .-..+|+.+++.|++|..| |+...+ .--..|-|-.=|-|..
T Consensus 437 KID~~fv~~i~~~~~~~~il~~ii~la~~lgi~vVAE-GVEt~~q~~~L~~~Gv~~~QGy~f~ 498 (518)
T PRK10551 437 KIDRGFIQAIGTETVTSPVLDAVLTLAKRLNMLTVAE-GVETPEQARWLRERGVNFLQGYWIS 498 (518)
T ss_pred EECHHHHhhhccChHHHHHHHHHHHHHHHCCCEEEEE-eCCcHHHHHHHHHcCCCEEEcCccC
Confidence 99987774 3333 3356999999999999777 555433 1223344444454443
No 289
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=58.59 E-value=1.4e+02 Score=28.84 Aligned_cols=117 Identities=15% Similarity=0.073 Sum_probs=75.2
Q ss_pred CCCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCcc----HHHHHH
Q 029925 22 RRFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGD----WAEHLI 96 (185)
Q Consensus 22 R~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~Gt----lfE~al 96 (185)
+-+=+-+|-|-.- +-.-....+.+++.-+ |+|=+|+++..-- .+.++..|+.+++. +++++--| -+|.|+
T Consensus 151 ~~~v~aEI~~a~~-l~~i~~~A~~~~~~GA---DIIDIG~~st~p~-~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL 225 (499)
T TIGR00284 151 PLRVVAEIPPTVA-EDGIEGLAARMERDGA---DMVALGTGSFDDD-PDVVKEKVKTALDALDSPVIADTPTLDELYEAL 225 (499)
T ss_pred CeEEEEEEcCCcc-hHHHHHHHHHHHHCCC---CEEEECCCcCCCc-HHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHH
Confidence 4444555555441 0101223333444444 4555788876332 23499999999987 89998765 788888
Q ss_pred HhCC--------chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 97 RNGP--------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 97 ~qg~--------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
..|. .++++.+..|++.|...|=+-... +-.-+...+.|+++.+.|+
T Consensus 226 ~aGAdiINsVs~~~~d~~~~l~a~~g~~vVlm~~~~-~~~~~~l~~~ie~a~~~Gi 280 (499)
T TIGR00284 226 KAGASGVIMPDVENAVELASEKKLPEDAFVVVPGNQ-PTNYEELAKAVKKLRTSGY 280 (499)
T ss_pred HcCCCEEEECCccchhHHHHHHHHcCCeEEEEcCCC-CchHHHHHHHHHHHHHCCC
Confidence 6642 357888888999999998887421 1111566688999999999
No 290
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=58.57 E-value=30 Score=29.92 Aligned_cols=68 Identities=18% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccCCCCCCCccccccccccccCCCCc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRST 178 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~~~~~~ 178 (185)
.++.++.+.+.|.|+|-|. ||..+..+.-.++++++++..+-+.-|.|-- ..+..++| ||..||==||
T Consensus 16 ~~~~~~~~~~~gtdai~vG-GS~~vt~~~~~~~v~~ik~~~lPvilfp~~~---~~i~~~aD----a~l~~svlNs 83 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILIG-GSQGVTYEKTDTLIEALRRYGLPIILFPSNP---TNVSRDAD----ALFFPSVLNS 83 (223)
T ss_pred cHHHHHHHHhcCCCEEEEc-CCCcccHHHHHHHHHHHhccCCCEEEeCCCc---cccCcCCC----EEEEEEeecC
Confidence 5778899999999999885 8999999999999999999886665555432 23444444 6666664443
No 291
>PRK08444 hypothetical protein; Provisional
Probab=58.55 E-value=1.5e+02 Score=27.10 Aligned_cols=88 Identities=15% Similarity=0.149 Sum_probs=60.5
Q ss_pred CcccccCChhHHHHHHHHHHhC--CceecCccHHHHHHHhC--CchHHHHHHHHHHcCCCEEEec-----C-------Cc
Q 029925 61 GGSHSLMPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNG--PSAFKEYVEDCKQVGFDTIELN-----V-------GS 124 (185)
Q Consensus 61 ~GTs~l~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg--~~~~~~yl~~~k~lGF~~IEIS-----d-------Gt 124 (185)
.|-..-.+-+.+.+-++..|+. +|.++.=|..|+..... .-..++.++.+++.|.+.+--. + -.
T Consensus 104 ~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~~g~~aEi~~~~vr~~I~p 183 (353)
T PRK08444 104 SAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSMPGGGAEIFDEEVRKKICK 183 (353)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccCCCCCchhcCHHHHhhhCC
Confidence 4433444556788888888875 46555436667655431 1358899999999999876431 1 13
Q ss_pred ccCChhHHHHHHHHHHHCCCeecc
Q 029925 125 LEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 125 i~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
-..+.++|.++++.|++.|+++.+
T Consensus 184 ~k~~~~~~~~i~~~a~~~Gi~~~s 207 (353)
T PRK08444 184 GKVSSERWLEIHKYWHKKGKMSNA 207 (353)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccc
Confidence 367789999999999999999833
No 292
>PLN02428 lipoic acid synthase
Probab=58.47 E-value=28 Score=32.00 Aligned_cols=72 Identities=17% Similarity=0.265 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec------CCccc----CChhHHHH
Q 029925 70 PFIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN------VGSLE----IPEETLLR 134 (185)
Q Consensus 70 ~~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS------dGti~----i~~~~r~~ 134 (185)
+...+.++.+|++ |+.+.+| |+-|. . +.+.+-++.++++|++.+=|. .-.++ +++++..+
T Consensus 231 e~~Le~L~~ak~~~pGi~tkSg~MvGLGET---~--Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~ 305 (349)
T PLN02428 231 KQSLDVLKHAKESKPGLLTKTSIMLGLGET---D--EEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEF 305 (349)
T ss_pred HHHHHHHHHHHHhCCCCeEEEeEEEecCCC---H--HHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHH
Confidence 4456777888888 8888765 56442 2 368888889999999998883 33332 56888889
Q ss_pred HHHHHHHCCCee
Q 029925 135 YVRLVKSAGLKA 146 (185)
Q Consensus 135 lI~~~~~~Gf~v 146 (185)
+=+.+.+.||+-
T Consensus 306 ~~~~~~~~gf~~ 317 (349)
T PLN02428 306 WREYGEEMGFRY 317 (349)
T ss_pred HHHHHHHcCCce
Confidence 999999999974
No 293
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=58.17 E-value=1.2e+02 Score=28.05 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=57.6
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc--------
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL-------- 125 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti-------- 125 (185)
+..+=|.-.+... +.+.+++..+..++.|+....-+ .-+ --++.++.+++.|+..|.+.--|.
T Consensus 246 ~~~i~f~Dd~f~~-~~~~~~~l~~~l~~~~i~~~~~~------~~~--~~~e~l~~l~~aG~~~v~iGiES~s~~~L~~~ 316 (472)
T TIGR03471 246 VREFFFDDDTFTD-DKPRAEEIARKLGPLGVTWSCNA------RAN--VDYETLKVMKENGLRLLLVGYESGDQQILKNI 316 (472)
T ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHhhcCceEEEEe------cCC--CCHHHHHHHHHcCCCEEEEcCCCCCHHHHHHh
Confidence 3445566555543 34457777777777776432211 011 236788889999999888876554
Q ss_pred --cCChhHHHHHHHHHHHCCCeecccc
Q 029925 126 --EIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 126 --~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
..+.++-.+.|+.+++.|+.|...+
T Consensus 317 ~K~~~~~~~~~~i~~~~~~Gi~v~~~~ 343 (472)
T TIGR03471 317 KKGLTVEIARRFTRDCHKLGIKVHGTF 343 (472)
T ss_pred cCCCCHHHHHHHHHHHHHCCCeEEEEE
Confidence 3456677788999999999886544
No 294
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=58.15 E-value=34 Score=32.56 Aligned_cols=52 Identities=15% Similarity=0.200 Sum_probs=33.7
Q ss_pred HHHHHHHHHcCCCEEEecC---------Cc-----ccCC-----hhHHHHHHHHHHHCCCeeccccccccC
Q 029925 104 KEYVEDCKQVGFDTIELNV---------GS-----LEIP-----EETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISd---------Gt-----i~i~-----~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
.+-|+++++|||++|.++- |. ..+. .++..+||+.|.++|++|.-.+=....
T Consensus 31 ~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~V~NH~ 101 (539)
T TIGR02456 31 TSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAILPEFGTIDDFKDFVDEAHARGMRVIIDLVLNHT 101 (539)
T ss_pred HHhHHHHHHCCCCEEEECCCcCCCCCCCCCCcccccccChhhCCHHHHHHHHHHHHHCCCEEEEEeccCcC
Confidence 3445666777777776642 11 1222 368899999999999999665444443
No 295
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=57.86 E-value=22 Score=34.26 Aligned_cols=69 Identities=13% Similarity=0.054 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCceecCc-c-HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 73 EEVVKRAHQHDVYVSTG-D-WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 73 ~eKI~l~~~~gV~v~~G-t-lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
.+-|++++++|..|..+ . ||+ ++.-.++.+-+.++.+.+.|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 125 ~~~v~~ak~~g~~V~~~~e~f~D-~~r~~~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~ 195 (526)
T TIGR00977 125 YDTVAYLKRQGDEVIYDAEHFFD-GYKANPEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRS 195 (526)
T ss_pred HHHHHHHHHcCCeEEEEeeeeee-cccCCHHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHh
Confidence 45688999999988653 3 543 334456789999999999999999999999888999999999999876
No 296
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=57.81 E-value=28 Score=30.58 Aligned_cols=76 Identities=12% Similarity=0.171 Sum_probs=44.2
Q ss_pred cCChhHHHHHHHHHHhCCceecC----c--cH-HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVST----G--DW-AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~----G--tl-fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (185)
+++.+.|++-|+....+++.+.- . +| +|.- .+.+. .+.|-.. .-..+.-..+.++-.++++.
T Consensus 12 ~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~------~~p~l----~~~g~~~-~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 12 FLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESK------KFPEL----AEKGGQI-NPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeC------ccchh----hhhcccc-cCCCCCCeECHHHHHHHHHH
Confidence 56677788888888888875541 1 12 2211 01111 1111000 00112236888999999999
Q ss_pred HHHCCCeecccccc
Q 029925 139 VKSAGLKAKPKFAV 152 (185)
Q Consensus 139 ~~~~Gf~v~~E~G~ 152 (185)
|+++|..|.||+-.
T Consensus 81 A~~rgI~viPEiD~ 94 (303)
T cd02742 81 AAARGIEVIPEIDM 94 (303)
T ss_pred HHHcCCEEEEeccc
Confidence 99999999888754
No 297
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=57.72 E-value=85 Score=26.56 Aligned_cols=116 Identities=16% Similarity=0.085 Sum_probs=70.7
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCce---------------ecCc
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---------------VSTG 89 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~---------------v~~G 89 (185)
.++.+.+=|+ . ....++.+++ +| .|.+ -.||..+-+.+.+++-.+.+.+-.|. |+.-
T Consensus 74 ~ipv~~~GGi--~-s~~~~~~~l~-~G--a~~V--iigt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~ 145 (253)
T PRK02083 74 FIPLTVGGGI--R-SVEDARRLLR-AG--ADKV--SINSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTH 145 (253)
T ss_pred CCCEEeeCCC--C-CHHHHHHHHH-cC--CCEE--EEChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEc
Confidence 4555666555 3 4556666666 33 4444 66788888888887766655211122 2222
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe----cCCcccCChhHHHHHHHHHHHC-CCeeccccccccC
Q 029925 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----NVGSLEIPEETLLRYVRLVKSA-GLKAKPKFAVMFN 155 (185)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI----SdGti~i~~~~r~~lI~~~~~~-Gf~v~~E~G~k~~ 155 (185)
+|.+. ......++.+.+.++|++.|=+ .+|+..-++ ..+|+.+++. ...|+..=|+...
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d---~~~i~~~~~~~~ipvia~GGv~s~ 209 (253)
T PRK02083 146 GGRKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD---LELTRAVSDAVNVPVIASGGAGNL 209 (253)
T ss_pred CCcee----cCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC---HHHHHHHHhhCCCCEEEECCCCCH
Confidence 35432 1126778889999999999888 457776664 3566666554 5677666666543
No 298
>PRK07329 hypothetical protein; Provisional
Probab=57.65 E-value=31 Score=29.37 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh--hHHHHHHHHHHHCCC
Q 029925 69 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE--ETLLRYVRLVKSAGL 144 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~--~~r~~lI~~~~~~Gf 144 (185)
.+.+++.++.++++|+ .+.++++.-.. ........++.|+++|...|=|+...-...+ ....+.++.+++.||
T Consensus 164 ~~~~~~i~~~~~~~~~~lEiNt~~~~~~~---~~~~~~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a~~~l~~~g~ 240 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAFELNTKSMYLYG---NEGLYRYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDAQKLLKEHGI 240 (246)
T ss_pred HHHHHHHHHHHHHcCCeEEEECcccccCC---CCcchHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 3456777788888887 44555552111 1112355688888888766666665554443 245567777888887
Q ss_pred eec
Q 029925 145 KAK 147 (185)
Q Consensus 145 ~v~ 147 (185)
+..
T Consensus 241 ~~~ 243 (246)
T PRK07329 241 KEI 243 (246)
T ss_pred ceE
Confidence 653
No 299
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.52 E-value=15 Score=31.26 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..-.+.++.++++||++.|| |.-|+.- +.+.|.|+|-+
T Consensus 96 ~~~~~v~~~~~~~~i~~iPG~~T~~E~~~-------------A~~~Gad~vkl 135 (213)
T PRK06552 96 SFNRETAKICNLYQIPYLPGCMTVTEIVT-------------ALEAGSEIVKL 135 (213)
T ss_pred CCCHHHHHHHHHcCCCEECCcCCHHHHHH-------------HHHcCCCEEEE
Confidence 34567888899999999998 5655532 44689999998
No 300
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=57.50 E-value=24 Score=31.12 Aligned_cols=70 Identities=26% Similarity=0.320 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC-----hhHHHH---HHHHH
Q 029925 68 PKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP-----EETLLR---YVRLV 139 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~-----~~~r~~---lI~~~ 139 (185)
..+.|+..|+.+|+.||.|+. |+ + --.+-++.++++|-++||+-.|...-. .++..+ .-+.+
T Consensus 111 ~~~~l~~~i~~L~~~gIrVSL--Fi------d--P~~~qi~~A~~~GAd~VELhTG~yA~a~~~~~~~el~~~~~aa~~a 180 (239)
T PRK05265 111 QFDKLKPAIARLKDAGIRVSL--FI------D--PDPEQIEAAAEVGADRIELHTGPYADAKTEAEAAELERIAKAAKLA 180 (239)
T ss_pred CHHHHHHHHHHHHHCCCEEEE--Ee------C--CCHHHHHHHHHhCcCEEEEechhhhcCCCcchHHHHHHHHHHHHHH
Confidence 456799999999999999885 11 1 123446678999999999988876433 222222 33456
Q ss_pred HHCCCeec
Q 029925 140 KSAGLKAK 147 (185)
Q Consensus 140 ~~~Gf~v~ 147 (185)
++.|+.|.
T Consensus 181 ~~lGL~Vn 188 (239)
T PRK05265 181 ASLGLGVN 188 (239)
T ss_pred HHcCCEEe
Confidence 67788883
No 301
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=57.50 E-value=46 Score=29.84 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=57.6
Q ss_pred EeeeCcccccCChhHHHHHHHHHHhC-CceecC--c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcc-------
Q 029925 57 LKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVST--G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSL------- 125 (185)
Q Consensus 57 lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~--G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti------- 125 (185)
.|=|+|++.+...+.+.+.++-.+++ +++|+- - +|-... .. +..-++.+.+.+.|.++|.|.-.|.
T Consensus 96 ~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~-~~--~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg 172 (318)
T TIGR00742 96 QNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLD-SY--EFLCDFVEIVSGKGCQNFIVHARKAWLSGLSP 172 (318)
T ss_pred CCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcc-hH--HHHHHHHHHHHHcCCCEEEEeCCchhhcCCCc
Confidence 56688999999999999999999875 666653 2 332111 11 1456788889999999999999884
Q ss_pred ----cCChhHHHHHHHHHHHC
Q 029925 126 ----EIPEETLLRYVRLVKSA 142 (185)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~ 142 (185)
.+++-++ +.|+++++.
T Consensus 173 ~~~~~~~~~~~-~~i~~vk~~ 192 (318)
T TIGR00742 173 KENREIPPLRY-ERVYQLKKD 192 (318)
T ss_pred cccccCCchhH-HHHHHHHHh
Confidence 1333344 678877774
No 302
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=57.43 E-value=25 Score=33.70 Aligned_cols=49 Identities=16% Similarity=0.116 Sum_probs=36.8
Q ss_pred HHHHHHcCCCEEEecCCcc----------cC----------ChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 107 VEDCKQVGFDTIELNVGSL----------EI----------PEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 107 l~~~k~lGF~~IEISdGti----------~i----------~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
|+++++||+++|+++=-+- .. +.++..++|+.+.++|++|+-.+=....
T Consensus 117 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~V~NH~ 185 (542)
T TIGR02402 117 LPYLADLGITAIELMPVAQFPGTRGWGYDGVLPYAPHNAYGGPDDLKALVDAAHGLGLGVILDVVYNHF 185 (542)
T ss_pred hHHHHHcCCCEEEeCccccCCCCCCCCCCccCccccccccCCHHHHHHHHHHHHHCCCEEEEEEccCCC
Confidence 6788999999999864311 00 2468889999999999999776655543
No 303
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=57.36 E-value=68 Score=28.17 Aligned_cols=100 Identities=10% Similarity=0.213 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccccEE-eeeCcccccCChhHHHHHHHHHHhCCc---eecCccHHHHHH---HhCC---chHHHHHHHHH
Q 029925 42 VLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI---RNGP---SAFKEYVEDCK 111 (185)
Q Consensus 42 ~~eDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al---~qg~---~~~~~yl~~~k 111 (185)
.+.++++...++ ..+ ++..-| +--.+.+.++.++++|+ .++.-|+=+..+ .++. +++-+-++.++
T Consensus 75 ~l~~li~~i~~~-~gi~~v~itT----NG~ll~~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~ 149 (334)
T TIGR02666 75 DLVELVARLAAL-PGIEDIALTT----NGLLLARHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAAL 149 (334)
T ss_pred CHHHHHHHHHhc-CCCCeEEEEe----CchhHHHHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHH
Confidence 466777765543 222 444433 33335677888888886 444434433222 2122 34556677888
Q ss_pred HcCCCEEEecCCcc-cCChhHHHHHHHHHHHCCCee
Q 029925 112 QVGFDTIELNVGSL-EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 112 ~lGF~~IEISdGti-~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.|+..|.|+-=.+ .++.++..++++.+++.|+.+
T Consensus 150 ~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 150 AAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred HcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 89998777764222 367888899999999999875
No 304
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=57.35 E-value=78 Score=25.88 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=59.6
Q ss_pred HHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCcc--HHH----HHHHhCCchHHHHHHHHHHcCCC----
Q 029925 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGD--WAE----HLIRNGPSAFKEYVEDCKQVGFD---- 116 (185)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~Gt--lfE----~al~qg~~~~~~yl~~~k~lGF~---- 116 (185)
+..+|-=.=+||.+-||..+-|. ..+-++-|+++|+++ |. ++. ..-.+. ..+-|++.++..|+.
T Consensus 17 ~~~~g~~fviiKateG~~~~d~~--~~~n~~~A~~aGl~v--G~Yhf~~~~~~~~~a~~--eA~~f~~~~~~~~l~~~~~ 90 (196)
T cd06415 17 YGQAGAKFAIVKISEGTNYVNPK--ASAQVSSAIANGKMT--GGYHFARFGGSVSQAKY--EADYFLNSAQQAGLPKGSY 90 (196)
T ss_pred HHhCCCcEEEEEEcCCCccCCcc--HHHHHHHHHHCCCee--EEEEEEecCCCHHHHHH--HHHHHHHHhhhcCCCCCCE
Confidence 55566556689999999988876 999999999999855 32 221 111111 345588889987765
Q ss_pred -E--EEecCCcccCChhH----HHHHHHHHHHCCCee
Q 029925 117 -T--IELNVGSLEIPEET----LLRYVRLVKSAGLKA 146 (185)
Q Consensus 117 -~--IEISdGti~i~~~~----r~~lI~~~~~~Gf~v 146 (185)
+ ||-+++. +.+. -..+++++++.|.++
T Consensus 91 ~~lDvE~~~~~---~~~~~~~~~~~f~~~v~~~G~~~ 124 (196)
T cd06415 91 LALDYEQGSGN---SKAANTSAILAFMDTIKDAGYKP 124 (196)
T ss_pred EEEEEecCCCC---CHHHHHHHHHHHHHHHHHhCCCc
Confidence 3 4544332 3333 245667777788876
No 305
>PRK13404 dihydropyrimidinase; Provisional
Probab=57.03 E-value=1.1e+02 Score=28.60 Aligned_cols=80 Identities=18% Similarity=0.224 Sum_probs=49.5
Q ss_pred CChhHHHHHHHHHHhCCceecC---c-cHHH----HHHHhCC----------------chHHHHHHHHHHcCCCEEEecC
Q 029925 67 MPKPFIEEVVKRAHQHDVYVST---G-DWAE----HLIRNGP----------------SAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~---G-tlfE----~al~qg~----------------~~~~~yl~~~k~lGF~~IEISd 122 (185)
++.+.+++-++.+|++|++|.. . .+++ .+...|. ..+...++.+++.|...-
T Consensus 163 ~~~~~l~~~~~~a~~~g~~V~~Hae~~~~i~~~~~~~~~~G~~~~~~~~~~rp~~~E~~~v~~~~~la~~~g~~~h---- 238 (477)
T PRK13404 163 LDDRQILDVLAVARRHGAMVMVHAENHDMIAWLTKRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPIL---- 238 (477)
T ss_pred CCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHCCCcchhhccccCCHHHHHHHHHHHHHHHHHhCCCEE----
Confidence 4456677777778888876643 2 2332 1222220 135566667777777641
Q ss_pred CcccCChhHHHHHHHHHHHCCCeeccccc
Q 029925 123 GSLEIPEETLLRYVRLVKSAGLKAKPKFA 151 (185)
Q Consensus 123 Gti~i~~~~r~~lI~~~~~~Gf~v~~E~G 151 (185)
..-++...-.++|+.+++.|+.|..|+-
T Consensus 239 -i~Hvs~~~~~~~i~~~k~~g~~vt~e~~ 266 (477)
T PRK13404 239 -IVHVSGREAAEQIRRARGRGLKIFAETC 266 (477)
T ss_pred -EEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence 2345566777999999999999877753
No 306
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=57.00 E-value=17 Score=34.12 Aligned_cols=86 Identities=17% Similarity=0.156 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCceecC--c-cHH---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh-----hHHHHHHHHHH
Q 029925 72 IEEVVKRAHQHDVYVST--G-DWA---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE-----ETLLRYVRLVK 140 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~~--G-tlf---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~-----~~r~~lI~~~~ 140 (185)
+++-++++|+|||+++. | |+. |.. ++.+-.+|+|-|=.|-.-+==.+ --|.++|++++
T Consensus 176 ~~~l~~ia~~~~lpvivD~aSg~~v~~e~~-----------l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq 244 (395)
T COG1921 176 EEELVEIAHEKGLPVIVDLASGALVDKEPD-----------LREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQ 244 (395)
T ss_pred HHHHHHHHHHcCCCEEEecCCccccccccc-----------hhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHH
Confidence 67799999999999997 6 665 433 33467899999999965431111 12557789999
Q ss_pred HCCCeeccccccccCCCCCCCcccccccccccc
Q 029925 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVAR 173 (185)
Q Consensus 141 ~~Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~ 173 (185)
+++++--=+++ +.+=+|=.+|+-+|..|
T Consensus 245 ~~~l~Ralrv~-----K~tla~l~~aLe~y~~~ 272 (395)
T COG1921 245 SHPLKRALRVD-----KETLAALEAALELYLQP 272 (395)
T ss_pred hhhhhhhhhcC-----cHhHHHHHHHHHHHcCc
Confidence 88665322222 22334445555555554
No 307
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=56.91 E-value=30 Score=29.20 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=40.0
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCee
Q 029925 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
=+++++.++.+||+++-+. |-+.+...+-..+-++.+++.|+..
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~ 108 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPY 108 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcE
Confidence 4678999999999999997 7788999999999999999999876
No 308
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=56.55 E-value=14 Score=33.96 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=55.5
Q ss_pred hhHHHHHHHhhcccccEEeeeCcccccCCh-------hHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchHHHHHHH
Q 029925 40 HNVLEDIFESMGQFVDGLKFSGGSHSLMPK-------PFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 40 ~~~~eDlLe~ag~yID~lKfg~GTs~l~p~-------~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~~~yl~~ 109 (185)
....+.+|+.|..| +.|-=| ||...|+ +.+++.+++||++|+.+.. ...|+..=..- +. ++.
T Consensus 13 ~~~~~~yi~~a~~~--Gf~~iF-TSL~ipe~~~~~~~~~~~~l~~~a~~~~~~v~~Disp~~l~~lg~~~-~d----l~~ 84 (357)
T PF05913_consen 13 FEENKAYIEKAAKY--GFKRIF-TSLHIPEDDPEDYLERLKELLKLAKELGMEVIADISPKVLKKLGISY-DD----LSF 84 (357)
T ss_dssp HHHHHHHHHHHHCT--TEEEEE-EEE---------HHHHHHHHHHHHHHCT-EEEEEE-CCHHHTTT-BT-TB----THH
T ss_pred HHHHHHHHHHHHHC--CCCEEE-CCCCcCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCH-HH----HHH
Confidence 45778888888876 344444 5566665 3577888999999998876 24666554432 13 345
Q ss_pred HHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 110 CKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+++|++.+-+.+|+-. ..+.++.++ |+++
T Consensus 85 ~~~lGi~~lRlD~Gf~~------~~ia~ls~n-g~~I 114 (357)
T PF05913_consen 85 FKELGIDGLRLDYGFSG------EEIAKLSKN-GIKI 114 (357)
T ss_dssp HHHHT-SEEEESSS-SC------HHHHHHTTT--SEE
T ss_pred HHHcCCCEEEECCCCCH------HHHHHHHhC-CCEE
Confidence 68899999999999875 233333344 8886
No 309
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=56.35 E-value=26 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
...++++.+.++||+.||+ |+...++.+ .++++++++.++
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~--G~~~~~~~~-~~~~~~~~~~~~ 60 (273)
T cd07941 21 DKLRIARKLDELGVDYIEG--GWPGSNPKD-TEFFARAKKLKL 60 (273)
T ss_pred HHHHHHHHHHHcCCCEEEe--cCCcCCHHH-HHHHHHHHHcCC
Confidence 5677888888999999998 333344444 466677666654
No 310
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=56.16 E-value=35 Score=26.87 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCCEEEecCCc---------------ccCChhHHHHHHHHHHHCCCee
Q 029925 103 FKEYVEDCKQVGFDTIELNVGS---------------LEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt---------------i~i~~~~r~~lI~~~~~~Gf~v 146 (185)
-++|++.+|+.|.++|=|..++ --|..+-..++|+.++++|++|
T Consensus 2 ~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv 60 (132)
T PF14871_consen 2 PEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRV 60 (132)
T ss_pred HHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEE
Confidence 3688999999999999996662 1456788889999999999999
No 311
>PRK14705 glycogen branching enzyme; Provisional
Probab=56.08 E-value=27 Score=37.24 Aligned_cols=52 Identities=19% Similarity=0.201 Sum_probs=38.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCc----------ccC----------ChhHHHHHHHHHHHCCCeecccccccc
Q 029925 103 FKEYVEDCKQVGFDTIELNVGS----------LEI----------PEETLLRYVRLVKSAGLKAKPKFAVMF 154 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGt----------i~i----------~~~~r~~lI~~~~~~Gf~v~~E~G~k~ 154 (185)
.++-+.++|+|||++||++==+ -.. +.++..++|+.+.++|+.|+-.+=...
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~V~nH 839 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAPTSRFGHPDEFRFLVDSLHQAGIGVLLDWVPAH 839 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCcCcccCCHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 3455789999999999986321 111 467889999999999999976554443
No 312
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.02 E-value=1.1e+02 Score=27.50 Aligned_cols=16 Identities=6% Similarity=-0.053 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhCCcee
Q 029925 71 FIEEVVKRAHQHDVYV 86 (185)
Q Consensus 71 ~L~eKI~l~~~~gV~v 86 (185)
-+|+.++..|+||..+
T Consensus 78 ~~~~l~~~vh~~g~~~ 93 (353)
T cd02930 78 GHRLITDAVHAEGGKI 93 (353)
T ss_pred HHHHHHHHHHHcCCEE
Confidence 3778888889998654
No 313
>PRK08508 biotin synthase; Provisional
Probab=55.82 E-value=1e+02 Score=26.71 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=19.7
Q ss_pred HHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCe
Q 029925 106 YVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.++.++++| +|+..|.| -=+.+++.+.+..+++.+-.
T Consensus 142 ~i~~a~~~G---i~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 142 TCENAKEAG---LGLCSGGIFGLGESWEDRISFLKSLASLSPH 181 (279)
T ss_pred HHHHHHHcC---CeecceeEEecCCCHHHHHHHHHHHHcCCCC
Confidence 334566666 35655554 23345566666666655533
No 314
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=55.62 E-value=13 Score=32.69 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=54.5
Q ss_pred cCChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
.|.++.+++.++.|+++||.|.|- +......... ...+....|.. + .....+.+.+++..++=.++++.+-++
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPEiD~PGH~~a~~~--~~p~l~~~~~~-~-~~~~~~~~~l~~~~~~t~~fl~~l~~e- 142 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPEIDMPGHSTAFVK--SFPKLLTECYA-G-LKLRDVFDPLDPTLPKGYDFLDDLFGE- 142 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEeccchHHHHHHHH--hCHHhccCccc-c-CCCCCCCCccCCCCccHHHHHHHHHHH-
Confidence 566677999999999999999883 3333322111 12333322322 1 122446678888776655666554443
Q ss_pred CeeccccccccCCCCCCCcccccccc
Q 029925 144 LKAKPKFAVMFNKSDIPSDRDRAFGA 169 (185)
Q Consensus 144 f~v~~E~G~k~~~~di~~g~d~~~~~ 169 (185)
+---|+..-|--|+||.+..
T Consensus 143 ------~~~lf~~~~iHiGgDE~~~~ 162 (303)
T cd02742 143 ------IAELFPDRYLHIGGDEAHFK 162 (303)
T ss_pred ------HHHhCCCCeEEecceecCCC
Confidence 11123456788888888753
No 315
>PRK06852 aldolase; Validated
Probab=55.60 E-value=69 Score=29.03 Aligned_cols=87 Identities=9% Similarity=0.054 Sum_probs=55.5
Q ss_pred EEeeeCcccccC-----ChhHHHHHHHHHHhCC-----------ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 56 GLKFSGGSHSLM-----PKPFIEEVVKRAHQHD-----------VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 56 ~lKfg~GTs~l~-----p~~~L~eKI~l~~~~g-----------V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
++|+..+|+... |...+---++-+-+.| +.+|+|.=.|.--.+ .+-+-.++|+++|+..|-
T Consensus 96 Ilkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~---~l~~v~~ea~~~GlPll~ 172 (304)
T PRK06852 96 LVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLS---EAAQIIYEAHKHGLIAVL 172 (304)
T ss_pred EEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHH---HHHHHHHHHHHhCCcEEE
Confidence 588888776664 2123333355555554 688899767765555 578888999999999985
Q ss_pred --------ecCCcccCChhHHHHHHHHHHHCC---Ceecc
Q 029925 120 --------LNVGSLEIPEETLLRYVRLVKSAG---LKAKP 148 (185)
Q Consensus 120 --------ISdGti~i~~~~r~~lI~~~~~~G---f~v~~ 148 (185)
|+|+. ..+.-..+.|.+.+.| .||.+
T Consensus 173 ~~yprG~~i~~~~---~~~~ia~aaRiaaELGADIVKv~y 209 (304)
T PRK06852 173 WIYPRGKAVKDEK---DPHLIAGAAGVAACLGADFVKVNY 209 (304)
T ss_pred EeeccCcccCCCc---cHHHHHHHHHHHHHHcCCEEEecC
Confidence 23322 3345556667777777 45543
No 316
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=55.59 E-value=71 Score=28.52 Aligned_cols=53 Identities=6% Similarity=0.134 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHCCCeeccccccccCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+..|-++||+.|=++--.+++.+--+ +++++.|...|.-|-.|+|.=-+.+
T Consensus 88 e~i~~Ai~~GftSVM~DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 142 (284)
T PRK09195 88 DDIAQKVRSGVRSVMIDGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQE 142 (284)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcc
Confidence 5567788999999999766544433222 3678888899999999999764443
No 317
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=55.53 E-value=71 Score=28.47 Aligned_cols=53 Identities=4% Similarity=0.080 Sum_probs=39.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHH--HHHHHHHHHCCCeeccccccccCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETL--LRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r--~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+..|-+.||+.|=+..-.+++.+--+ .++++.+...|.-|-.|+|.=-+.+
T Consensus 86 e~i~~ai~~GFtSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e 140 (282)
T TIGR01858 86 DDIRQKVHAGVRSAMIDGSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVE 140 (282)
T ss_pred HHHHHHHHcCCCEEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCcc
Confidence 5567789999999999766554433222 3678888899999999999764444
No 318
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=55.44 E-value=14 Score=30.43 Aligned_cols=48 Identities=27% Similarity=0.452 Sum_probs=34.8
Q ss_pred chhHHHHHHHhhcccc----cEEeeeCcccccCChhHHHHHHHHHHhCCceec
Q 029925 39 SHNVLEDIFESMGQFV----DGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (185)
Q Consensus 39 g~~~~eDlLe~ag~yI----D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (185)
.+..+.+.++...++. +.|-|.+|-..+.+ +.+.+.++.++++|+.+.
T Consensus 47 s~e~i~~~i~~~~~~~~~~~~~I~~~GGEPll~~-~~~~~li~~~~~~g~~~~ 98 (235)
T TIGR02493 47 TPEELIKEVGSYKDFFKASGGGVTFSGGEPLLQP-EFLSELFKACKELGIHTC 98 (235)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCcccccCH-HHHHHHHHHHHHCCCCEE
Confidence 4456666666665554 47899988887766 568899999999998543
No 319
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=55.39 E-value=40 Score=30.04 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=57.8
Q ss_pred EEeeeCcccccCChhHHHHHHHHHHhC-Cceec--C-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC---C
Q 029925 56 GLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVS--T-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI---P 128 (185)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~--~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i---~ 128 (185)
..|-|.|++++-+.+.+++.++-.++. ++++. . .||-+ ......++.+.+.+.|.+.|.|...+.+- .
T Consensus 105 v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-----~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G 179 (321)
T PRK10415 105 VNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-----EHRNCVEIAQLAEDCGIQALTIHGRTRACLFNG 179 (321)
T ss_pred HcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-----CcchHHHHHHHHHHhCCCEEEEecCccccccCC
Confidence 356777888888899999999988764 44444 2 35543 11246688888999999999999876421 1
Q ss_pred hhHHHHHHHHHHHC-CCee
Q 029925 129 EETLLRYVRLVKSA-GLKA 146 (185)
Q Consensus 129 ~~~r~~lI~~~~~~-Gf~v 146 (185)
..++ ++|+++++. ...|
T Consensus 180 ~a~~-~~i~~ik~~~~iPV 197 (321)
T PRK10415 180 EAEY-DSIRAVKQKVSIPV 197 (321)
T ss_pred CcCh-HHHHHHHHhcCCcE
Confidence 2334 788887774 4444
No 320
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=55.23 E-value=10 Score=32.59 Aligned_cols=123 Identities=15% Similarity=0.230 Sum_probs=53.7
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhh---cccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC----cc--HH-
Q 029925 23 RFGVTEMRSPHYTLSSSHNVLEDIFESM---GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----GD--WA- 92 (185)
Q Consensus 23 ~~GlTmV~DkG~s~~~g~~~~eDlLe~a---g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----Gt--lf- 92 (185)
..|...+.|++- |+|.. |+.+ ..+-..+ +=-+=-.+...+.|+..++.+.+++|-+.| || ++
T Consensus 62 ~~g~~vl~d~~~----gLN~A---l~~a~~~~~~~~vl-vl~aDLPll~~~dl~~~l~~~~~~~vviap~r~gGTN~L~~ 133 (217)
T PF01983_consen 62 RLGAEVLPDPGR----GLNAA---LNAALAAAGDDPVL-VLPADLPLLTPEDLDALLAAAGRADVVIAPDRGGGTNALLL 133 (217)
T ss_dssp --SSEEEE---S-----HHHH---HHHHHH-H--S-EE-EE-S--TT--HHHHHHHCT-SS--SEEEEE-GGG-EEEEEE
T ss_pred ccCCeEecCCCC----CHHHH---HHHHHhccCCCceE-EeecCCccCCHHHHHHHHhccCCCCEEEeCCCCCCeEEEEe
Confidence 669999999964 55433 3333 2221111 111222233445688899998888898887 23 22
Q ss_pred ---HHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH------------HHHHHCCCeeccccccc
Q 029925 93 ---EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV------------RLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 93 ---E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI------------~~~~~~Gf~v~~E~G~k 153 (185)
..-..-|++++...++.+++.|.++..+..-.+.++-++-..|. +.+++.||.+.++-|.+
T Consensus 134 ~~~~~~~~fg~~S~~~H~~~A~~~gl~~~v~~s~~l~~DVDtp~DL~ell~hG~g~~t~~~L~~~g~~~~~~~~~~ 209 (217)
T PF01983_consen 134 RPDAFPFRFGGGSFARHLRAARERGLSVAVVDSFRLALDVDTPEDLAELLLHGVGTHTREYLRKLGFSVEPKHGSE 209 (217)
T ss_dssp SCCC-----SSSHHHHHHHHHHCTT--EEE---TTTT----SCCHHHHHHHH--SH-HHHHHHTEEEEE-S-----
T ss_pred cCCCCCCCcChhHHHHHHHHHHHCCCeEEEEccCceeecCCCHHHHHHHHHcCCCHHHHHHHHHCCCEEEeccccc
Confidence 22234455599999999999999998886655544333322222 34556677776665543
No 321
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=55.20 E-value=80 Score=28.08 Aligned_cols=53 Identities=15% Similarity=0.309 Sum_probs=38.9
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeeccccccccCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+..|-+.||+.|=|+-..+++.+-- =.++++.++..|.-|-.|+|.=-+.+
T Consensus 83 ~~i~~ai~~GftSVMiD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e 137 (276)
T cd00947 83 ELIKRAIRAGFSSVMIDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEE 137 (276)
T ss_pred HHHHHHHHhCCCEEEeCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCcc
Confidence 455567889999999986665443322 23788889999999999999765444
No 322
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=55.12 E-value=63 Score=28.87 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=68.5
Q ss_pred HHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec----CccH----HHHHHH----------------
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TGDW----AEHLIR---------------- 97 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~Gtl----fE~al~---------------- 97 (185)
.++++|..|-+- +++-|.+.+++-+.++.-|+-|.+.+-++. +|+. ++.+..
T Consensus 5 ~~k~ll~~A~~~----~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~~g~~~~~~~~~~~A~~~~vPV~lH 80 (283)
T PRK07998 5 NGRILLDRIQEK----HVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNAQLSGYDYIYEIVKRHADKMDVPVSLH 80 (283)
T ss_pred cHHHHHHHHHHC----CCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHHhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 456666554332 356667777777777777777777774332 1110 111111
Q ss_pred --hCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHHHHHHHCCCeeccccccccCCCC
Q 029925 98 --NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (185)
Q Consensus 98 --qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI~~~~~~Gf~v~~E~G~k~~~~d 158 (185)
++ .--+.+..|-++||+.|=+ |||- +|.++ =.++++.|...|.-|-.|+|.=-+.+|
T Consensus 81 LDH~--~~~e~i~~Ai~~GftSVM~-DgS~-l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed 143 (283)
T PRK07998 81 LDHG--KTFEDVKQAVRAGFTSVMI-DGAA-LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKED 143 (283)
T ss_pred CcCC--CCHHHHHHHHHcCCCEEEE-eCCC-CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccc
Confidence 22 2235677788999999999 5654 55543 347788889999999999987655543
No 323
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=55.06 E-value=1e+02 Score=27.59 Aligned_cols=117 Identities=21% Similarity=0.284 Sum_probs=74.6
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccc--cEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-CC
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFV--DGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-GP 100 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yI--D~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g~ 100 (185)
|..++=|-+....+..++.+++..-.+- +.+.+ |.-.-|..+-.++++.++++|+ .++.| ++-+..+.. |+
T Consensus 54 ~i~~gGGtps~l~~~~l~~L~~~i~~~~~~~~~ei---tie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L~~l~R 130 (374)
T PRK05799 54 SIFIGGGTPTYLSLEALEILKETIKKLNKKEDLEF---TVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLLKYLGR 130 (374)
T ss_pred EEEECCCcccCCCHHHHHHHHHHHHhCCCCCCCEE---EEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHHHHcCC
Confidence 3445555333225667777776654321 11222 2224466667899999999999 77778 666655532 21
Q ss_pred ----chHHHHHHHHHHcCCCE--EEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 101 ----SAFKEYVEDCKQVGFDT--IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 101 ----~~~~~yl~~~k~lGF~~--IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.+-++.+++.||+. +-+--|.-.-+.++..+.++.+.+.|..-
T Consensus 131 ~~~~~~~~~ai~~l~~~g~~~v~~dli~GlPgqt~e~~~~~l~~~~~l~~~~ 182 (374)
T PRK05799 131 IHTFEEFLENYKLARKLGFNNINVDLMFGLPNQTLEDWKETLEKVVELNPEH 182 (374)
T ss_pred CCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCCCHHHHHHHHHHHHhcCCCE
Confidence 23555677788999984 45556766678888889999999887553
No 324
>PRK10992 iron-sulfur cluster repair di-iron protein; Provisional
Probab=55.04 E-value=38 Score=28.85 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=43.1
Q ss_pred HHHHHHhCCceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHH
Q 029925 75 VVKRAHQHDVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYV 136 (185)
Q Consensus 75 KI~l~~~~gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI 136 (185)
-.++.++|||.+|.| ++-|+|-.+| =..+++++++.++--..- +...-+.|.+....+|
T Consensus 18 ~~~vf~~~~idfCcgG~~~l~ea~~~~~-i~~~~~~~~l~~~~~~~~--~~~~~~~~~~~LidyI 79 (220)
T PRK10992 18 ATALFREYDLDFCCGGKQTLARAAARKN-LDIDVIEARLAALQEQPI--EKDWRSAPLAELIDHI 79 (220)
T ss_pred HHHHHHHcCCcccCCCCchHHHHHHHcC-CCHHHHHHHHHHHHhccc--cCChhhCCHHHHHHHH
Confidence 356889999999985 4888887776 348889999888753332 3445567777777777
No 325
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=55.00 E-value=13 Score=27.51 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=40.9
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccc
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
+.+.+|...+-+.|.+.|=.|-+-+. +...+.+|.+.++++|-++..|
T Consensus 70 ~~~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L~~~A~~~g~~~~~e 117 (117)
T PF03447_consen 70 EAVAEYYEKALERGKHVVTANKGALA-DEALYEELREAARKNGVRIYYE 117 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHHHHHHHHHT-EEEEG
T ss_pred hHHHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHHHHHHHHcCCEEEeC
Confidence 46778888999999999999999999 9999999999999999776543
No 326
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=54.74 E-value=63 Score=28.56 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=55.4
Q ss_pred HHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccc
Q 029925 72 IEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
+-+.+..++..||.+.- =|+.--.+..| .+.|++.+|+.|-+..=| .++|+|+-..+-..++++|+...|-
T Consensus 82 i~emvk~ar~~gvt~PIiLmgYYNPIl~yG---~e~~iq~ak~aGanGfii----vDlPpEEa~~~Rne~~k~gislvpL 154 (268)
T KOG4175|consen 82 IIEMVKEARPQGVTCPIILMGYYNPILRYG---VENYIQVAKNAGANGFII----VDLPPEEAETLRNEARKHGISLVPL 154 (268)
T ss_pred HHHHHHHhcccCcccceeeeecccHHHhhh---HHHHHHHHHhcCCCceEe----ccCChHHHHHHHHHHHhcCceEEEe
Confidence 55666777777874433 36777777775 889999999999764433 3799999999999999999887665
Q ss_pred cc
Q 029925 150 FA 151 (185)
Q Consensus 150 ~G 151 (185)
+-
T Consensus 155 va 156 (268)
T KOG4175|consen 155 VA 156 (268)
T ss_pred eC
Confidence 54
No 327
>PRK15108 biotin synthase; Provisional
Probab=54.36 E-value=28 Score=31.42 Aligned_cols=72 Identities=21% Similarity=0.395 Sum_probs=45.3
Q ss_pred cCChhHHHHHHHHHHhCCc-eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 029925 66 LMPKPFIEEVVKRAHQHDV-YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
+++.+.+.+++..+.+.|| .++.| +|.+- ....-+.+.+-++.+|+.|...+ +|+|. ++. +.++++++.|
T Consensus 75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p-~~~~~e~i~~~i~~ik~~~i~v~-~s~G~--ls~----e~l~~LkeAG 146 (345)
T PRK15108 75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLETC-MTLGT--LSE----SQAQRLANAG 146 (345)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEecCCCC-CcchHHHHHHHHHHHHhCCCEEE-EeCCc--CCH----HHHHHHHHcC
Confidence 4566678888888999999 55544 45221 11111246666777888887655 88885 443 3455667777
Q ss_pred Ce
Q 029925 144 LK 145 (185)
Q Consensus 144 f~ 145 (185)
+.
T Consensus 147 ld 148 (345)
T PRK15108 147 LD 148 (345)
T ss_pred CC
Confidence 65
No 328
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=54.21 E-value=40 Score=28.11 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=33.9
Q ss_pred chhHHHHHHHhhccc----ccEEeeeCcccccCChhHHHHHHHHHHhCCceec
Q 029925 39 SHNVLEDIFESMGQF----VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (185)
Q Consensus 39 g~~~~eDlLe~ag~y----ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (185)
.+.++-+.+.....+ .+.|.|++|=..+. .+.+.+-++.+++.|+.+.
T Consensus 52 t~eei~~~i~~~~~~~~~~~~~V~~sGGEPll~-~~~~~~l~~~~k~~g~~i~ 103 (246)
T PRK11145 52 TVEELMKEVVTYRHFMNASGGGVTASGGEAILQ-AEFVRDWFRACKKEGIHTC 103 (246)
T ss_pred CHHHHHHHHHHhHHHHhcCCCeEEEeCccHhcC-HHHHHHHHHHHHHcCCCEE
Confidence 344565666655554 35899998877654 5668899999999998653
No 329
>cd01297 D-aminoacylase D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.
Probab=54.06 E-value=76 Score=28.79 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCCCee
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+.++++.+.|...+-++-... ..+.++..++.+.+++.|..+
T Consensus 169 ~~~l~~~al~~Ga~g~~~~~~y~~~~~~~~~~l~~~~~~a~~~g~~v 215 (415)
T cd01297 169 MRELLREALEAGALGISTGLAYAPRLYAGTAELVALARVAARYGGVY 215 (415)
T ss_pred HHHHHHHHHHCCCeEEEcccccCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 34444444555654443332112 356666667777777776665
No 330
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=53.84 E-value=31 Score=31.11 Aligned_cols=27 Identities=15% Similarity=0.269 Sum_probs=23.5
Q ss_pred cCChhHHHHHHHHHHHCCCeecccccc
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
-.+.++..++|+.|+++|..|+||+-.
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~ 108 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDM 108 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCC
Confidence 467999999999999999999998643
No 331
>COG5014 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=53.74 E-value=26 Score=30.31 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=39.9
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
.+..++-.|+.|||.|-||.+-=.|..+.-+++|+...++-|.+.
T Consensus 80 aeRL~ei~K~~g~d~vRiSG~EP~l~~EHvlevIeLl~~~tFvlE 124 (228)
T COG5014 80 AERLLEISKKRGCDLVRISGAEPILGREHVLEVIELLVNNTFVLE 124 (228)
T ss_pred HHHHHHHHHhcCCcEEEeeCCCccccHHHHHHHHHhccCceEEEE
Confidence 566778889999999999999999999999999999988877663
No 332
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=53.69 E-value=15 Score=31.75 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=33.1
Q ss_pred ccCChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCC
Q 029925 65 SLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVG 123 (185)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdG 123 (185)
.|.|. +=.+.++.|++|||+++|| |--|+... -++|++.+.+=-+
T Consensus 89 iVsP~-~~~ev~~~a~~~~ip~~PG~~TptEi~~A-------------le~G~~~lK~FPa 135 (211)
T COG0800 89 IVSPG-LNPEVAKAANRYGIPYIPGVATPTEIMAA-------------LELGASALKFFPA 135 (211)
T ss_pred EECCC-CCHHHHHHHHhCCCcccCCCCCHHHHHHH-------------HHcChhheeecCc
Confidence 35554 5678899999999999999 78887643 3567777765433
No 333
>PRK05481 lipoyl synthase; Provisional
Probab=53.63 E-value=44 Score=29.41 Aligned_cols=70 Identities=20% Similarity=0.300 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEe---cC--C-cccCC----hhHHHHH
Q 029925 71 FIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL---NV--G-SLEIP----EETLLRY 135 (185)
Q Consensus 71 ~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEI---Sd--G-ti~i~----~~~r~~l 135 (185)
...+.++.+|+. |+.+.+| |+-|. .+.+.+-++.++++||+.+=| |. - .+.+| .+...++
T Consensus 181 ~~le~i~~ar~~~pgi~~~t~~IvGfGET-----~ed~~~tl~~lrel~~d~v~if~Ys~pa~k~~~v~~~~k~~r~~~l 255 (289)
T PRK05481 181 RSLELLKRAKELHPGIPTKSGLMVGLGET-----DEEVLEVMDDLRAAGVDILTIGQYLQPSRKHLPVERYVTPEEFDEY 255 (289)
T ss_pred HHHHHHHHHHHhCCCCeEeeeeEEECCCC-----HHHHHHHHHHHHhcCCCEEEEEccCCCccccCCCCCcCCHHHHHHH
Confidence 345556667777 7766665 44432 125666677777777777777 22 1 11333 3444556
Q ss_pred HHHHHHCCCe
Q 029925 136 VRLVKSAGLK 145 (185)
Q Consensus 136 I~~~~~~Gf~ 145 (185)
.+.+++.||.
T Consensus 256 ~~~~~~i~~~ 265 (289)
T PRK05481 256 KEIALELGFL 265 (289)
T ss_pred HHHHHHcCch
Confidence 6666666773
No 334
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=53.49 E-value=44 Score=29.92 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhC--CceecCc---cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc----------CChhHHHHH
Q 029925 71 FIEEVVKRAHQH--DVYVSTG---DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE----------IPEETLLRY 135 (185)
Q Consensus 71 ~L~eKI~l~~~~--gV~v~~G---tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~----------i~~~~r~~l 135 (185)
.-.+.++.+++. |+.+.+| |+-|.- +.+.+-++.++++||+.+=|.-=.-. +++++...+
T Consensus 192 ~~Le~l~~ak~~~pgi~~~TgiIVGlGETe-----ee~~etl~~Lrelg~d~v~igqYl~p~~~~~~v~~~~~p~~f~~~ 266 (302)
T TIGR00510 192 WSLKLLERAKEYLPNLPTKSGIMVGLGETN-----EEIKQTLKDLRDHGVTMVTLGQYLRPSRRHLPVKRYVSPEEFDYY 266 (302)
T ss_pred HHHHHHHHHHHhCCCCeecceEEEECCCCH-----HHHHHHHHHHHhcCCCEEEeecccCCCCCCCccccCCCHHHHHHH
Confidence 345788899998 8988887 676643 26788889999999999998766554 678888888
Q ss_pred HHHHHHCCCee
Q 029925 136 VRLVKSAGLKA 146 (185)
Q Consensus 136 I~~~~~~Gf~v 146 (185)
=+.+.+.||+-
T Consensus 267 ~~~a~~~gf~~ 277 (302)
T TIGR00510 267 RSVALEMGFLH 277 (302)
T ss_pred HHHHHHcCChh
Confidence 88899999974
No 335
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=53.42 E-value=26 Score=31.98 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.-.++.+.+.++||+.||+ |+-.++++++ +.|+.+.+.|+.+
T Consensus 27 ~k~~ia~~L~~~GV~~IE~--G~p~~~~~~~-e~i~~i~~~~~~~ 68 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEA--GFPAVSEDEK-EAIKAIAKLGLNA 68 (378)
T ss_pred HHHHHHHHHHHhCCCEEEE--eCCCcChHHH-HHHHHHHhcCCCe
Confidence 3456777788889999998 5666677775 5667777676654
No 336
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=53.37 E-value=32 Score=31.97 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS 87 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (185)
+|.|.+.+.+-.+ -..+++.+++... +|.+|.|+ |.+.+.+..-++.++++|+++.
T Consensus 46 ~~~~~i~~~~~~~--~~~q~~a~~~d~~--~~~ik~G~----l~~~e~~~~i~~~~k~~g~~vv 101 (448)
T PRK08573 46 YEVRAIHDLPPEV--VAAQIEAVWEDMG--IDAAKTGM----LSNREIIEAVAKTVSKYGFPLV 101 (448)
T ss_pred CCceEEEECCHHH--HHHHHHHHHhcCC--CCEEEECC----cCCHHHHHHHHHHHHHcCCCEE
Confidence 5888998888522 1145666666555 68999997 6688999999999999998654
No 337
>PRK07369 dihydroorotase; Provisional
Probab=53.33 E-value=1.9e+02 Score=26.70 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=24.8
Q ss_pred cCChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
-++..+=.++|+++|+.|.+|..|+-...--
T Consensus 234 HvSs~~~~~~i~~ak~~g~~vt~Ev~phhL~ 264 (418)
T PRK07369 234 RISTARSVELIAQAKARGLPITASTTWMHLL 264 (418)
T ss_pred eCCCHHHHHHHHHHHHcCCCeEEEecHHHHh
Confidence 5677788899999999999998888765443
No 338
>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]
Probab=53.23 E-value=1.3e+02 Score=25.57 Aligned_cols=93 Identities=24% Similarity=0.413 Sum_probs=66.0
Q ss_pred HHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC-CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 43 LEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 43 ~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
+.+.++..|. +-.+=|++|--.+-+. +.+.++.+++. +++++..|.- .. --+++++..+++|++.|-||
T Consensus 56 ~~~~~~~~g~-~~~v~~~gGEPll~~d--~~ei~~~~~~~~~~~~~~~TnG-~~------~~~~~~~~l~~~g~~~v~iS 125 (347)
T COG0535 56 VIDELAELGE-IPVVIFTGGEPLLRPD--LLEIVEYARKKGGIRVSLSTNG-TL------LTEEVLEKLKEAGLDYVSIS 125 (347)
T ss_pred HHHHHHHcCC-eeEEEEeCCCcccccc--HHHHHHHHhhcCCeEEEEeCCC-cc------CCHHHHHHHHhcCCcEEEEE
Confidence 3556667777 8888888888888754 99999999955 7766654322 00 12456666899999999999
Q ss_pred CCcccCCh-----------hHHHHHHHHHHHCCCe
Q 029925 122 VGSLEIPE-----------ETLLRYVRLVKSAGLK 145 (185)
Q Consensus 122 dGti~i~~-----------~~r~~lI~~~~~~Gf~ 145 (185)
-.+.+-.. +...+.|+.+++.|+.
T Consensus 126 id~~~~e~hd~~rg~~g~~~~~~~~i~~~~~~g~~ 160 (347)
T COG0535 126 LDGLDPETHDPIRGVKGVFKRAVEAIKNLKEAGIL 160 (347)
T ss_pred ecCCChhhhhhhcCCCcHHHHHHHHHHHHHHcCCe
Confidence 77654322 3556788889998974
No 339
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=52.97 E-value=18 Score=32.60 Aligned_cols=96 Identities=13% Similarity=0.106 Sum_probs=56.6
Q ss_pred cccccCChhHHHHHHHHHHhCCceecC--cc--HHHHHHHhCCchHHHHHHHHHHc-CCCEEEecCCcccCChhHHHHHH
Q 029925 62 GSHSLMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIRNGPSAFKEYVEDCKQV-GFDTIELNVGSLEIPEETLLRYV 136 (185)
Q Consensus 62 GTs~l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~al~qg~~~~~~yl~~~k~l-GF~~IEISdGti~i~~~~r~~lI 136 (185)
...-.|..+.+++.|+.|+++||.|.| -+ =...++..- ++..-.|... ....++.+.+.+++..++=.+++
T Consensus 62 ~~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~~----p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl 137 (348)
T cd06562 62 SPSEVYTPEDVKEIVEYARLRGIRVIPEIDTPGHTGSWGQGY----PELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFL 137 (348)
T ss_pred CCCceECHHHHHHHHHHHHHcCCEEEEeccCchhhHHHHHhC----hhhhCCCCccccccccCCCCccccCCChhHHHHH
Confidence 334567778899999999999999987 22 223333222 1211111100 00135667788888877666766
Q ss_pred HHHHHCCCeeccccccccCCCCCCCccccccc
Q 029925 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (185)
Q Consensus 137 ~~~~~~Gf~v~~E~G~k~~~~di~~g~d~~~~ 168 (185)
+.+-++ +---|+..-|--|+||...
T Consensus 138 ~~vl~E-------~~~lF~~~~iHiGgDE~~~ 162 (348)
T cd06562 138 KTLFKE-------VSELFPDKYFHLGGDEVNF 162 (348)
T ss_pred HHHHHH-------HHHhcCCcceEeecCCCCC
Confidence 655444 1122346678888888764
No 340
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=52.89 E-value=60 Score=27.12 Aligned_cols=114 Identities=19% Similarity=0.113 Sum_probs=68.9
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec--------------CccH
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS--------------TGDW 91 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~--------------~Gtl 91 (185)
+..+.+=|+ . ....++++++. | +|.+ ..|+..+.+.+++++..+.+++..|.++ +=+|
T Consensus 72 ~pv~~~GGI--~-s~~d~~~~l~~-G--~~~v--~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~ 143 (243)
T cd04731 72 IPLTVGGGI--R-SLEDARRLLRA-G--ADKV--SINSAAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGG 143 (243)
T ss_pred CCEEEeCCC--C-CHHHHHHHHHc-C--CceE--EECchhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCC
Confidence 444444443 2 44555555653 2 6654 5567788888888888787765445433 1124
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc----ccCChhHHHHHHHHHHHC-CCeecccccccc
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS----LEIPEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt----i~i~~~~r~~lI~~~~~~-Gf~v~~E~G~k~ 154 (185)
.+. ......++.+.+.+.|++.|.+++-+ ..-. ..++++++++. ...|...=|+..
T Consensus 144 ~~~----~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~---~~~~i~~i~~~~~~pvia~GGi~~ 204 (243)
T cd04731 144 RKP----TGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY---DLELIRAVSSAVNIPVIASGGAGK 204 (243)
T ss_pred cee----cCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC---CHHHHHHHHhhCCCCEEEeCCCCC
Confidence 333 12356788899999999999996532 2222 24666666654 666766656653
No 341
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=52.85 E-value=17 Score=31.75 Aligned_cols=65 Identities=14% Similarity=0.024 Sum_probs=44.5
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHh
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRN 98 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~q 98 (185)
.++....|=. +. ++..++.+++..+ + -+|.-|+|+ +++ .++-.++|++|||++++|+++|.-+..
T Consensus 227 ~~ipIa~~E~--~~-~~~~~~~~~~~~~~d~v~~~~~~~GG----i~~---~~~~~~~a~~~gi~~~~~~~~~~~i~~ 294 (316)
T cd03319 227 SPLPIMADES--CF-SAADAARLAGGGAYDGINIKLMKTGG----LTE---ALRIADLARAAGLKVMVGCMVESSLSI 294 (316)
T ss_pred CCCCEEEeCC--CC-CHHHHHHHHhcCCCCEEEEeccccCC----HHH---HHHHHHHHHHcCCCEEEECchhhHHHH
Confidence 3455555543 35 7788888888543 2 234555554 332 678899999999999999877877655
No 342
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=52.79 E-value=95 Score=27.72 Aligned_cols=70 Identities=23% Similarity=0.185 Sum_probs=50.0
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChh--HHHHHHHHHHhCCc-eecCc--c-HHHHHHHhCCchHHHHHHHHHHcC
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKP--FIEEVVKRAHQHDV-YVSTG--D-WAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~--~L~eKI~l~~~~gV-~v~~G--t-lfE~al~qg~~~~~~yl~~~k~lG 114 (185)
+.++...+.+| |=+|-=-|-+.|++.. .+.+-++..++++| .+||+ | +-+.++.+ +.++
T Consensus 181 niv~~~~~~~g---~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg~~a~~~l~------------~~~~ 245 (259)
T COG1237 181 NIVEWAKERSG---DRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTGEKAKRYLR------------RVFG 245 (259)
T ss_pred HHHHHHHHhcc---ceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH------------HHcC
Confidence 56788888888 5556555556666554 68899999999999 89997 4 55544443 3567
Q ss_pred CCEEEecCCcc
Q 029925 115 FDTIELNVGSL 125 (185)
Q Consensus 115 F~~IEISdGti 125 (185)
...+++..|++
T Consensus 246 ~~~~~v~~G~~ 256 (259)
T COG1237 246 EKYEEVGVGTE 256 (259)
T ss_pred cceeeccCceE
Confidence 77788777764
No 343
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=52.77 E-value=75 Score=28.80 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=59.2
Q ss_pred chhHHHHHHHhhccc-ccEEe-eeCcccccCChhHHHHHHHHHHhCC--ceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMGQF-VDGLK-FSGGSHSLMPKPFIEEVVKRAHQHD--VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag~y-ID~lK-fg~GTs~l~p~~~L~eKI~l~~~~g--V~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
.+.++...++.+.++ +.-+- +|+.+-...+-+.|.+.++..+++. |.+ |+. + .-.+-++.+++.|
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I------ei~----~-lt~e~~~~Lk~aG 172 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI------EVQ----P-LNEEEYKKLVEAG 172 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc------ccc----c-CCHHHHHHHHHcC
Confidence 344444444433332 33333 3444444455567888888887752 222 211 1 1233347899999
Q ss_pred CCEEEecCCcc-------------cCChhHHHHHHHHHHHCCCe-ec
Q 029925 115 FDTIELNVGSL-------------EIPEETLLRYVRLVKSAGLK-AK 147 (185)
Q Consensus 115 F~~IEISdGti-------------~i~~~~r~~lI~~~~~~Gf~-v~ 147 (185)
++.+-++--|. .=+.++|++.|+++++.||. |.
T Consensus 173 v~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~ 219 (366)
T TIGR02351 173 LDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIG 219 (366)
T ss_pred CCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeec
Confidence 99998865553 11578899999999999997 53
No 344
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=52.67 E-value=39 Score=29.87 Aligned_cols=70 Identities=23% Similarity=0.297 Sum_probs=49.0
Q ss_pred cCChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCC
Q 029925 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~G 143 (185)
-++.+.+++.++.+.+.|+ .+.. || |-.+.. .+.+.++++++.|+...=++||++ +++ +.++.+++.|
T Consensus 36 ~l~~e~~~~ii~~~~~~g~~~v~~~GG--EPll~~---~~~~ii~~~~~~g~~~~l~TNG~l-l~~----e~~~~L~~~g 105 (358)
T TIGR02109 36 ELTTEEWTDVLTQAAELGVLQLHFSGG--EPLARP---DLVELVAHARRLGLYTNLITSGVG-LTE----ARLDALADAG 105 (358)
T ss_pred CCCHHHHHHHHHHHHhcCCcEEEEeCc--cccccc---cHHHHHHHHHHcCCeEEEEeCCcc-CCH----HHHHHHHhCC
Confidence 3566778889999999997 3333 53 444433 588999999999997666788864 443 3466667777
Q ss_pred Ce
Q 029925 144 LK 145 (185)
Q Consensus 144 f~ 145 (185)
+.
T Consensus 106 ~~ 107 (358)
T TIGR02109 106 LD 107 (358)
T ss_pred CC
Confidence 74
No 345
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=52.66 E-value=30 Score=32.21 Aligned_cols=95 Identities=23% Similarity=0.322 Sum_probs=63.9
Q ss_pred Hhhcc--cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCch-HHHHHHHHHHcCCCEEEecCCc
Q 029925 48 ESMGQ--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSA-FKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 48 e~ag~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~-~~~yl~~~k~lGF~~IEISdGt 124 (185)
...+. .|+-|=||+||-.+++++.|++-++..+++=- ....-.|+.+--+|.. =.+.++.+++.||+. ||=|-
T Consensus 80 ~~~~~~~~v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~--~~~~~~EitiE~nP~~~~~e~~~~l~~~GvNR--iSlGV 155 (416)
T COG0635 80 ALLGGQREVKTIYFGGGTPSLLSPEQLERLLKALRELFN--DLDPDAEITIEANPGTVEAEKFKALKEAGVNR--ISLGV 155 (416)
T ss_pred hhcCCCCeEEEEEECCCccccCCHHHHHHHHHHHHHhcc--cCCCCceEEEEeCCCCCCHHHHHHHHHcCCCE--EEecc
Confidence 34444 48889999999999999999999999986641 0011234444334443 346777799999995 55566
Q ss_pred ccCChh------------HHHHHHHHHHHCCCee
Q 029925 125 LEIPEE------------TLLRYVRLVKSAGLKA 146 (185)
Q Consensus 125 i~i~~~------------~r~~lI~~~~~~Gf~v 146 (185)
-+...+ +-...++.+++.||.-
T Consensus 156 Qsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~ 189 (416)
T COG0635 156 QSFNDEVLKALGRIHDEEEAKEAVELARKAGFTS 189 (416)
T ss_pred ccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCc
Confidence 665554 4456677778877764
No 346
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=52.66 E-value=10 Score=34.13 Aligned_cols=68 Identities=13% Similarity=0.311 Sum_probs=54.4
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..++.++..|-.-|-++ .=.+++-+++++.++.+.+.+|+||- .|-|. .+..|++.|.+++++.--+
T Consensus 137 E~vR~~I~~A~kVIAIV-----MD~FTD~dIf~DLleAa~kR~VpVYi------LLD~~--~~~~Fl~Mc~~~~v~~~~~ 203 (284)
T PF07894_consen 137 EVVRRMIQQAQKVIAIV-----MDVFTDVDIFCDLLEAANKRGVPVYI------LLDEQ--NLPHFLEMCEKLGVNLQHL 203 (284)
T ss_pred HHHHHHHHHhcceeEEE-----eeccccHHHHHHHHHHHHhcCCcEEE------Eechh--cChHHHHHHHHCCCChhhc
Confidence 34577888898888766 33578999999999999999999994 44555 8999999999999875443
Q ss_pred c
Q 029925 121 N 121 (185)
Q Consensus 121 S 121 (185)
.
T Consensus 204 ~ 204 (284)
T PF07894_consen 204 K 204 (284)
T ss_pred C
Confidence 3
No 347
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=52.61 E-value=33 Score=34.97 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=48.4
Q ss_pred ChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCE-----E-----------------EecCC
Q 029925 68 PKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDT-----I-----------------ELNVG 123 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~-----I-----------------EISdG 123 (185)
+++..++-|+.+|++||.+. +|.=.+.|..= |+++|+.. | +=.+-
T Consensus 580 lr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~i-----------A~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~V 648 (941)
T TIGR01517 580 LRPGVREAVQECQRAGITVRMVTGDNIDTAKAI-----------ARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRV 648 (941)
T ss_pred CchhHHHHHHHHHHCCCEEEEECCCChHHHHHH-----------HHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeE
Confidence 34568899999999999665 68644444332 56666631 1 11134
Q ss_pred cccCChhHHHHHHHHHHHCCCee
Q 029925 124 SLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 124 ti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+-.+++++|.++|+..++.|-.|
T Consensus 649 far~sPe~K~~iV~~lq~~g~vV 671 (941)
T TIGR01517 649 LARSSPLDKQLLVLMLKDMGEVV 671 (941)
T ss_pred EEECCHHHHHHHHHHHHHCCCEE
Confidence 56899999999999999999877
No 348
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=52.59 E-value=38 Score=31.14 Aligned_cols=44 Identities=23% Similarity=0.187 Sum_probs=35.1
Q ss_pred HHHHHHHHHcCCCEEEec---------CCcccCChhHHHHHHHHHHHCCCeec
Q 029925 104 KEYVEDCKQVGFDTIELN---------VGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS---------dGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
++..+.+++.|.+.+.-+ +=..+-+-++|.+-++.+++.|++|.
T Consensus 144 ~eq~~~L~~aGvd~ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vc 196 (335)
T COG0502 144 EEQAEKLADAGVDRYNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVC 196 (335)
T ss_pred HHHHHHHHHcChhheecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccc
Confidence 455666889999988773 33346788999999999999999993
No 349
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=52.52 E-value=29 Score=28.56 Aligned_cols=41 Identities=27% Similarity=0.481 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
..+++++.|++.|.+.|.++++ .+ .++++.+++.++.+.+-
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~---~~----~~~~~~~~~~~i~~i~~ 108 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG---PP----AEVVERLKAAGIKVIPT 108 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC---CC----HHHHHHHHHcCCEEEEe
Confidence 6788999999999999999988 22 35677777778877553
No 350
>PRK12928 lipoyl synthase; Provisional
Probab=52.28 E-value=51 Score=29.17 Aligned_cols=18 Identities=17% Similarity=0.431 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHCCCe
Q 029925 128 PEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 128 ~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+++.+.++.+++.++.
T Consensus 217 T~ed~~etl~~Lrel~~d 234 (290)
T PRK12928 217 TEDEVIETLRDLRAVGCD 234 (290)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 445555555555555443
No 351
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=52.27 E-value=1.1e+02 Score=27.72 Aligned_cols=17 Identities=35% Similarity=0.599 Sum_probs=13.5
Q ss_pred HHHHHHcCCCEEEecCC
Q 029925 107 VEDCKQVGFDTIELNVG 123 (185)
Q Consensus 107 l~~~k~lGF~~IEISdG 123 (185)
-+.|++.|||.|||.-|
T Consensus 148 A~~a~~aGfDgVeih~a 164 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGA 164 (337)
T ss_pred HHHHHHcCCCEEEEccc
Confidence 34567779999999877
No 352
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=52.21 E-value=87 Score=28.33 Aligned_cols=121 Identities=18% Similarity=0.215 Sum_probs=79.2
Q ss_pred chhHHHHHHHhhccc--ccEEeeeCcccccCC--hhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMGQF--VDGLKFSGGSHSLMP--KPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag~y--ID~lKfg~GTs~l~p--~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
.++.++.+|+.|-+- ==+|.++-|+...+. .....-...++++|+|+|..= +-+| .=.+++..|-+.|
T Consensus 27 nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~vPV~lH------lDHg--~~~~~~~~ai~~G 98 (286)
T COG0191 27 NLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYGVPVALH------LDHG--ASFEDCKQAIRAG 98 (286)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCCCCEEEE------CCCC--CCHHHHHHHHhcC
Confidence 667777888765431 125667777766666 344444556788888888851 0111 1234455577999
Q ss_pred CCEEEecCCcccCChh--HHHHHHHHHHHCCCeeccccccccCCCC-CCCcccccc
Q 029925 115 FDTIELNVGSLEIPEE--TLLRYVRLVKSAGLKAKPKFAVMFNKSD-IPSDRDRAF 167 (185)
Q Consensus 115 F~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~v~~E~G~k~~~~d-i~~g~d~~~ 167 (185)
|+.|=+.--..++.+- .=.++++++...|..|-.|+|.=-+.+| +....++++
T Consensus 99 FsSvMiDgS~~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~ 154 (286)
T COG0191 99 FSSVMIDGSHLPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPAD 154 (286)
T ss_pred CceEEecCCcCCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhh
Confidence 9999886665555443 2347899999999999999998777766 444444333
No 353
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=52.16 E-value=95 Score=28.33 Aligned_cols=117 Identities=14% Similarity=0.074 Sum_probs=75.0
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-----
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN----- 98 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q----- 98 (185)
|.-+.=|=|..-.+..++.+++..-.+++...-.-=|.-..|..+-.++++.++++|| .++.| ++-+..+..
T Consensus 76 siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L~~l~R~~ 155 (394)
T PRK08898 76 TVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHLKALGRIH 155 (394)
T ss_pred EEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHHHHhCCCC
Confidence 5566656544437889999999998888765322334556777788899999999999 68888 677776652
Q ss_pred CCchHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCC
Q 029925 99 GPSAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 99 g~~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
....+.+-++.+++. |..|-+ --|.=-=+.+++.+-++.+.+.+.
T Consensus 156 ~~~~~~~~i~~~~~~-~~~v~~dlI~GlPgqt~~~~~~~l~~~~~l~p 202 (394)
T PRK08898 156 DGAEARAAIEIAAKH-FDNFNLDLMYALPGQTLDEALADVETALAFGP 202 (394)
T ss_pred CHHHHHHHHHHHHHh-CCceEEEEEcCCCCCCHHHHHHHHHHHHhcCC
Confidence 112344455555665 443322 222222245556566777777665
No 354
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=51.88 E-value=18 Score=32.07 Aligned_cols=92 Identities=14% Similarity=0.205 Sum_probs=55.9
Q ss_pred ccccCChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCCC--EEEecCCcccCChhHHHHHHHH
Q 029925 63 SHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGFD--TIELNVGSLEIPEETLLRYVRL 138 (185)
Q Consensus 63 Ts~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF~--~IEISdGti~i~~~~r~~lI~~ 138 (185)
..-.|.++.+++.++.|+++||.|.| -+.-..-.... .. .++++. ....+.+.+++..++=.++|+.
T Consensus 75 ~~~~YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~--~~-------pel~~~~~~~~~~~~~l~~~~~~t~~f~~~ 145 (326)
T cd06564 75 NDGYYTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTK--AM-------PELGLKNPFSKYDKDTLDISNPEAVKFVKA 145 (326)
T ss_pred CCCcccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHH--hh-------HHhcCCCcccCCCcccccCCCHHHHHHHHH
Confidence 34567788899999999999999988 23222211111 12 223332 2456778888888777777776
Q ss_pred HHHCCCeeccccccccCCCCCCCccccccc
Q 029925 139 VKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (185)
Q Consensus 139 ~~~~Gf~v~~E~G~k~~~~di~~g~d~~~~ 168 (185)
+-++=....+. ...-+--|+||.+.
T Consensus 146 l~~E~~~~f~~-----~~~~~HiGgDE~~~ 170 (326)
T cd06564 146 LFDEYLDGFNP-----KSDTVHIGADEYAG 170 (326)
T ss_pred HHHHHHHhcCC-----CCCEEEeccccccc
Confidence 55541111220 25667778887765
No 355
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=51.65 E-value=37 Score=28.95 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 69 KPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.+++-|+.+.+.|| -++ .||--|...... +.-.+.++.+.+.-=..+.|-.|.-..+.++-.++.+.+++.|...
T Consensus 17 ~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~-~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~ 95 (281)
T cd00408 17 LDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTD-EERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADG 95 (281)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCcccccCCH-HHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCE
Confidence 3456677777777666 222 254334332221 1223333333322113455556666666666667777777766553
No 356
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=51.57 E-value=51 Score=26.28 Aligned_cols=80 Identities=14% Similarity=0.051 Sum_probs=56.7
Q ss_pred hcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC
Q 029925 50 MGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (185)
Q Consensus 50 ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (185)
.+++| +-|-.+ |+++..+ |.+ +++++|| .+.. |.-.++|+.+- ...+.++||+++=++|.+-+.
T Consensus 87 ~~~~v-~~K~~~--saF~~t~-L~~---~L~~~gi~~vvi~G~~t~~CV~~T-------a~~A~~~Gy~v~vv~Da~a~~ 152 (179)
T cd01015 87 EDEMV-LVKKYA--SAFFGTS-LAA---TLTARGVDTLIVAGCSTSGCIRAT-------AVDAMQHGFRPIVVRECVGDR 152 (179)
T ss_pred CCCEE-EecCcc--CCccCCc-HHH---HHHHcCCCEEEEeeecccHhHHHH-------HHHHHHCCCeEEEeeccccCC
Confidence 34443 456553 3444432 444 4578998 4444 77888888774 245789999999999999999
Q ss_pred ChhHHHHHHHHHHHCC
Q 029925 128 PEETLLRYVRLVKSAG 143 (185)
Q Consensus 128 ~~~~r~~lI~~~~~~G 143 (185)
+++.....+..++..+
T Consensus 153 ~~~~h~~al~~l~~~~ 168 (179)
T cd01015 153 APAPHEANLFDIDNKY 168 (179)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999888888887663
No 357
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=51.19 E-value=33 Score=29.31 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
...++++.+.++|++.||+. .-.+++.++ +.++.+.+.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~g--~p~~~~~~~-e~~~~l~~~~~ 60 (259)
T cd07939 21 EKLAIARALDEAGVDEIEVG--IPAMGEEER-EAIRAIVALGL 60 (259)
T ss_pred HHHHHHHHHHHcCCCEEEEe--cCCCCHHHH-HHHHHHHhcCC
Confidence 45677777888888888883 444555554 45666665443
No 358
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=51.19 E-value=29 Score=36.83 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=40.0
Q ss_pred HHHHHHHHcCCCEEEecCCc-------------------ccC------------ChhHHHHHHHHHHHCCCeeccccccc
Q 029925 105 EYVEDCKQVGFDTIELNVGS-------------------LEI------------PEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGt-------------------i~i------------~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
+-++++|+||+++||++==+ -.+ +.++..++|+.+.++|++|+-.+=..
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VILDvV~N 270 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVILDVVFN 270 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCccccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEEEEEccc
Confidence 45678999999999985221 111 56789999999999999997766665
Q ss_pred cCCCC
Q 029925 154 FNKSD 158 (185)
Q Consensus 154 ~~~~d 158 (185)
+...+
T Consensus 271 Ht~~~ 275 (1221)
T PRK14510 271 HTGES 275 (1221)
T ss_pred cccCC
Confidence 55443
No 359
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=51.17 E-value=1.6e+02 Score=25.32 Aligned_cols=91 Identities=21% Similarity=0.324 Sum_probs=56.2
Q ss_pred chhHHHHHHH-hhcccccEEeeeC-c-----cc----ccCChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHH
Q 029925 39 SHNVLEDIFE-SMGQFVDGLKFSG-G-----SH----SLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKE 105 (185)
Q Consensus 39 g~~~~eDlLe-~ag~yID~lKfg~-G-----Ts----~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~ 105 (185)
++.++++.++ ....-.|++|+-. | +. ..++.+.+++-++.++++|+++.. .+- .
T Consensus 118 ~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~~~-------------~ 184 (342)
T cd01299 118 GVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKAGLYVAAHAYGA-------------E 184 (342)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHcCCEEEEEeCCH-------------H
Confidence 3444333333 3445789999753 1 01 246778899999999999998875 221 1
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccc
Q 029925 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
-++.+-+.|++.||=... +++ +.++++++.|..+.|-
T Consensus 185 ~i~~~l~~G~~~i~H~~~---~~~----~~~~~l~~~g~~~~~t 221 (342)
T cd01299 185 AIRRAIRAGVDTIEHGFL---IDD----ETIELMKEKGIFLVPT 221 (342)
T ss_pred HHHHHHHcCCCEEeecCC---CCH----HHHHHHHHCCcEEeCc
Confidence 122344568888875432 333 4577788888877544
No 360
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=51.15 E-value=54 Score=27.33 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=28.0
Q ss_pred CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc
Q 029925 83 DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE 126 (185)
Q Consensus 83 gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~ 126 (185)
+|.+ +|| |-.+..+ .+.+.++.+++.|+...=.+||++.
T Consensus 73 ~V~~-sGG--EPll~~~--~~~~l~~~~k~~g~~i~l~TNG~~~ 111 (246)
T PRK11145 73 GVTA-SGG--EAILQAE--FVRDWFRACKKEGIHTCLDTNGFVR 111 (246)
T ss_pred eEEE-eCc--cHhcCHH--HHHHHHHHHHHcCCCEEEECCCCCC
Confidence 5554 343 4444443 5778999999999988778899875
No 361
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=51.13 E-value=45 Score=29.70 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=38.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeeccccccccCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+..|-+.||+.|=+.--.+++.+-- =.++++.+...|.-|-.|+|.=-+.+
T Consensus 88 e~i~~ai~~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e 142 (284)
T PRK12737 88 DDIKKKVRAGIRSVMIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQE 142 (284)
T ss_pred HHHHHHHHcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcc
Confidence 566778999999999976654443322 23678888889999999999764443
No 362
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=50.97 E-value=21 Score=31.43 Aligned_cols=58 Identities=19% Similarity=0.201 Sum_probs=39.2
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhcccccEE-----eeeCcccccCChhHHHHHHHHHHhCCceecCccHHH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (185)
.++..+.|=.+ . ++..++.+++.. -+|++ |.|+ +++ ..+-+++|+++||++++|++.|
T Consensus 239 ~~ipi~~dE~~--~-~~~~~~~~i~~~--~~d~v~~k~~~~GG----i~~---~~~i~~~a~~~g~~~~~~~~~~ 301 (357)
T cd03316 239 TSVPIAAGENL--Y-TRWEFRDLLEAG--AVDIIQPDVTKVGG----ITE---AKKIAALAEAHGVRVAPHGAGG 301 (357)
T ss_pred CCCCEEecccc--c-cHHHHHHHHHhC--CCCEEecCccccCC----HHH---HHHHHHHHHHcCCeEeccCCCC
Confidence 35556665543 4 677777777643 25555 5555 333 6788899999999999987644
No 363
>PRK09248 putative hydrolase; Validated
Probab=50.64 E-value=42 Score=28.28 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCccc---CCh-hHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLE---IPE-ETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~---i~~-~~r~~lI~~~~~~Gf~v 146 (185)
..++.++.+++.|. +|||+.+++. .+. ..-.++++.+++.|+.+
T Consensus 141 ~~~~~~~~~~~~g~-~lEvN~~~l~~~~~g~~~~~~~~~~~~~~~g~~~ 188 (246)
T PRK09248 141 DIEAVVKAAKEHNV-ALEINNSSFGHSRKGSEDNCRAIAALCKKAGVWV 188 (246)
T ss_pred cHHHHHHHHHHhCC-EEEEECCCCccCCCCCcChHHHHHHHHHHcCCeE
Confidence 46788899999999 9999999872 111 12346889999999876
No 364
>PRK07328 histidinol-phosphatase; Provisional
Probab=50.57 E-value=18 Score=30.98 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCCe
Q 029925 70 PFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGLK 145 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~Gf~ 145 (185)
+.+++-++.+.++|+ .+.+++|---.-... --.++++.|+++|.. |=|+...-....= ...+..+.+++.||+
T Consensus 177 ~~~~~il~~~~~~g~~lEiNt~~~r~~~~~~y--p~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~~~l~~~G~~ 253 (269)
T PRK07328 177 ELYEEALDVIAAAGLALEVNTAGLRKPVGEIY--PSPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEALALLKEVGYT 253 (269)
T ss_pred HHHHHHHHHHHHcCCEEEEEchhhcCCCCCCC--CCHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHHHHHHHcCCc
Confidence 456888899999998 445554421100011 235788999999987 4454444333222 345578888889987
Q ss_pred ec
Q 029925 146 AK 147 (185)
Q Consensus 146 v~ 147 (185)
-.
T Consensus 254 ~~ 255 (269)
T PRK07328 254 ET 255 (269)
T ss_pred EE
Confidence 53
No 365
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=50.53 E-value=38 Score=29.29 Aligned_cols=78 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred ChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 68 PKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+++-|+.+-+.|| -++ .|+--|...... +.-.+.++.+.+.-=..+.|-.|....+.++=.++++.+++.|..
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~-~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~d 98 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVVVGTTGESPTLTH-EEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGAD 98 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCcCCccccCCH-HHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCCC
Confidence 34557777777777777 223 354333322111 122222222222111223344555556666667777777777655
Q ss_pred e
Q 029925 146 A 146 (185)
Q Consensus 146 v 146 (185)
.
T Consensus 99 ~ 99 (292)
T PRK03170 99 G 99 (292)
T ss_pred E
Confidence 3
No 366
>PRK05985 cytosine deaminase; Provisional
Probab=50.31 E-value=1.3e+02 Score=26.75 Aligned_cols=119 Identities=19% Similarity=0.184 Sum_probs=63.6
Q ss_pred CCceeEec-----CCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHH
Q 029925 24 FGVTEMRS-----PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIR 97 (185)
Q Consensus 24 ~GlTmV~D-----kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~ 97 (185)
.|.|-|+| |+..+. +...+.++.+.....||.==..+...-+++..-..+.++-+.+.|..+..| +... ...
T Consensus 110 ~G~t~vr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~ll~~~l~~g~~~~gg~~p~~-~~~ 187 (391)
T PRK05985 110 AGTTAMRSHVDVDPDAGLR-HLEAVLAARETLRGLIDIQIVAFPQSGVLSRPGTAELLDAALRAGADVVGGLDPAG-IDG 187 (391)
T ss_pred cCcceEEeeEccCCCcccc-hHHHHHHHHHHhhCcccEEEEeccCccccCCcCHHHHHHHHHHcCCCEEeCCCCCC-cCC
Confidence 48998755 444333 455566666666665553222222333344322345566555556543333 2222 111
Q ss_pred hCCchHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 98 NGPSAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.....+++.++.++++|... +=+... -+.......++++.+.+.|+.
T Consensus 188 ~~~~~l~~~~~~A~~~g~~i~~Hv~e~-~d~~~~~~~~~~e~~~~~g~~ 235 (391)
T PRK05985 188 DPEGQLDIVFGLAERHGVGIDIHLHEP-GELGAFQLERIAARTRALGMQ 235 (391)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEeeCCC-CCccHHHHHHHHHHHHHhCCC
Confidence 11136888899999999753 233322 233455666788888888764
No 367
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=50.07 E-value=37 Score=31.62 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=20.4
Q ss_pred HHHHHHHhCCc-eecCc-----cHHHHHHHhCCchHHHHHHHHHHcCCCEE
Q 029925 74 EVVKRAHQHDV-YVSTG-----DWAEHLIRNGPSAFKEYVEDCKQVGFDTI 118 (185)
Q Consensus 74 eKI~l~~~~gV-~v~~G-----tlfE~al~qg~~~~~~yl~~~k~lGF~~I 118 (185)
.=|+.+|+||- .++++ .|.|..+. .+++.+++++++|+.+|
T Consensus 20 ~Yi~~~~~~Gf~~IFtsl~~~~~~~~~~~~----~~~ell~~Anklg~~vi 66 (360)
T COG3589 20 AYIDRMHKYGFKRIFTSLLIPEEDAELYFH----RFKELLKEANKLGLRVI 66 (360)
T ss_pred HHHHHHHHcCccceeeecccCCchHHHHHH----HHHHHHHHHHhcCcEEE
Confidence 33555666665 33332 24442221 45666666666666654
No 368
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=50.05 E-value=79 Score=26.93 Aligned_cols=117 Identities=14% Similarity=0.070 Sum_probs=65.9
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC----c-----------
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST----G----------- 89 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~----G----------- 89 (185)
.+..+.+=|. + .+..++++++. | .|. +-.||+++.+.+.+++-.+.+-+-.|.++. |
T Consensus 74 ~~pv~~~GGi--~-s~~d~~~~~~~-G--a~~--vivgt~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~ 145 (254)
T TIGR00735 74 FIPLTVGGGI--K-SIEDVDKLLRA-G--ADK--VSINTAAVKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVY 145 (254)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHc-C--CCE--EEEChhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEE
Confidence 3444555454 3 45566667764 4 444 466899999988888865555211233322 2
Q ss_pred --cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHC-CCeecccccccc
Q 029925 90 --DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSA-GLKAKPKFAVMF 154 (185)
Q Consensus 90 --tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~-Gf~v~~E~G~k~ 154 (185)
+|.|. ......++.+.+.++|++.|.+++-.-+- +--+ .++++++++. ...|..-=|+..
T Consensus 146 i~gw~~~----~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~ipvia~GGi~s 210 (254)
T TIGR00735 146 IYGGRES----TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVKIPVIASGGAGK 210 (254)
T ss_pred EeCCccc----CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCCCCEEEeCCCCC
Confidence 23332 12367899999999999999996522211 1111 2455555544 455554444443
No 369
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=49.97 E-value=1.2e+02 Score=26.75 Aligned_cols=100 Identities=15% Similarity=0.281 Sum_probs=66.1
Q ss_pred cchhHHHHHHHhhcccc----------cEEeeeCc------ccccCChhHHHHHHHHHHhCCc---eecC-ccHHHHHHH
Q 029925 38 SSHNVLEDIFESMGQFV----------DGLKFSGG------SHSLMPKPFIEEVVKRAHQHDV---YVST-GDWAEHLIR 97 (185)
Q Consensus 38 ~g~~~~eDlLe~ag~yI----------D~lKfg~G------Ts~l~p~~~L~eKI~l~~~~gV---~v~~-GtlfE~al~ 97 (185)
+|..+.+.+|-..-.+| -++|++.| ..++.| ++.-|+++++.|+ +++| ||+--.
T Consensus 90 tgag~sr~~Lg~~~T~vN~LvsPTG~~G~VkISTGp~Ss~~~~~iV~---vetAiaml~dmG~~SiKffPM~Gl~~l--- 163 (236)
T TIGR03581 90 TGVGTSRALLGQADTVINGLVSPTGTPGLVNISTGPLSSQGKEAIVP---IETAIAMLKDMGGSSVKFFPMGGLKHL--- 163 (236)
T ss_pred cchHHHHHHhCCccceEEEeecCCCccceEEeccCcccccCCCceee---HHHHHHHHHHcCCCeeeEeecCCcccH---
Confidence 35556667773333343 57899999 333444 7788999999886 8888 543110
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe-ecccc
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK-AKPKF 150 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~-v~~E~ 150 (185)
+.+...-+.|.+.||- +| =|--|+.+...++++.+.+.|.+ |.|.+
T Consensus 164 ---eE~~avA~aca~~g~~-lE---PTGGIdl~Nf~~I~~i~ldaGv~kviPHI 210 (236)
T TIGR03581 164 ---EEYAAVAKACAKHGFY-LE---PTGGIDLDNFEEIVQIALDAGVEKVIPHV 210 (236)
T ss_pred ---HHHHHHHHHHHHcCCc-cC---CCCCccHHhHHHHHHHHHHcCCCeecccc
Confidence 0233334679999995 45 44456778888999999999986 56644
No 370
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=49.81 E-value=29 Score=29.79 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
...++++.+.++||+.||+ |+...+++++ +.++.+.+.
T Consensus 21 ~k~~i~~~L~~~Gv~~iEv--g~~~~~~~~~-~~~~~l~~~ 58 (268)
T cd07940 21 EKLEIARQLDELGVDVIEA--GFPAASPGDF-EAVKRIARE 58 (268)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCCHHHH-HHHHHHHHh
Confidence 5678899999999999999 5655666666 566666654
No 371
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=49.72 E-value=28 Score=34.86 Aligned_cols=60 Identities=18% Similarity=0.348 Sum_probs=44.9
Q ss_pred eecCcc-HHHHHHHhCCchHHHHHHHHHHcCCCEEEe----------cCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 85 YVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFDTIEL----------NVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 85 ~v~~Gt-lfE~al~qg~~~~~~yl~~~k~lGF~~IEI----------SdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+.|. -.|..-. . ..++=++..|.+||++|++ ..|..+.+.-+.. +|++|.+.|+.|+-
T Consensus 16 ~l~gG~y~p~~~p~-~--~w~ddl~~mk~~G~N~V~ig~faW~~~eP~eG~fdf~~~D~~-~l~~a~~~Gl~vil 86 (673)
T COG1874 16 LLYGGDYYPERWPR-E--TWMDDLRKMKALGLNTVRIGYFAWNLHEPEEGKFDFTWLDEI-FLERAYKAGLYVIL 86 (673)
T ss_pred EEeccccChHHCCH-H--HHHHHHHHHHHhCCCeeEeeeEEeeccCccccccCcccchHH-HHHHHHhcCceEEE
Confidence 344443 4444433 3 6777788899999999999 6788888866665 79999999999954
No 372
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=49.57 E-value=18 Score=28.82 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=59.5
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..+.+++ ..+..-.-+-|-.-...+.+...+.+-|+.++++|+.++...+ ..+ ..-++.+..+.++.|.|
T Consensus 106 ~~l~~~l-~~~~~~~~l~lei~e~~~~~~~~~~~~l~~l~~~G~~i~ld~~-----g~~----~~~~~~l~~l~~~~ikl 175 (236)
T PF00563_consen 106 DWLSNLL-QYGLPPSRLVLEISENDLPNDAELLENLRRLRSLGFRIALDDF-----GSG----SSSLEYLASLPPDYIKL 175 (236)
T ss_dssp HHHHHHH-HTTGGGGGEEEEEEGHHHHHHHHHHHHHHHHHHCT-EEEEEEE-----TST----CGCHHHHHHHCGSEEEE
T ss_pred ccccccc-cccccccceEEEEechHhhhhHHHHHHHHHHHhcCceeEeeec-----cCC----cchhhhhhhccccccee
Confidence 3455555 5555555566665554333333355899999999999987432 011 11133477889999999
Q ss_pred cCCccc-C----ChhHHHHHHHHHHHCCCeeccc
Q 029925 121 NVGSLE-I----PEETLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 121 SdGti~-i----~~~~r~~lI~~~~~~Gf~v~~E 149 (185)
|-..+. + .......+++.+++.|.+|..+
T Consensus 176 d~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~ 209 (236)
T PF00563_consen 176 DGSLVRDLSDEEAQSLLQSLINLAKSLGIKVIAE 209 (236)
T ss_dssp EHHGHTTTTSHHHHHHHHHHHHHHHHTT-EEEEE
T ss_pred ecccccccchhhHHHHHHHHHHHhhcccccccee
Confidence 988772 2 2333345777889999988653
No 373
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=49.57 E-value=37 Score=37.49 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------------------ChhHHHHHHHHHHHCCCeeccccccccCC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------------------PEETLLRYVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------------------~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
.+.+-+.++++|||++|.+|--+-.- +.++..++|+.++++|++|+-.+=..+.+
T Consensus 759 ~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~idp~lG~~edf~~Lv~~ah~~Gi~vilDiV~NH~~ 833 (1693)
T PRK14507 759 DAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQINPEIGGEEGFERFCAALKAHGLGQLLDIVPNHMG 833 (1693)
T ss_pred HHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccCcccCCHHHHHHHHHHHHHCCCEEEEEecccccC
Confidence 46677889999999999998554421 45688999999999999997766555444
No 374
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=49.49 E-value=1.1e+02 Score=27.26 Aligned_cols=53 Identities=17% Similarity=0.362 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhH--HHHHHHHHHHCCCeeccccccccCCC
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEET--LLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~--r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
+.+..|-+.||+.|=+.--.+++.+-- =.++++.|...|.-|-.|+|.=-+.+
T Consensus 88 e~i~~ai~~GftSVM~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e 142 (284)
T PRK12857 88 EQVMKCIRNGFTSVMIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTE 142 (284)
T ss_pred HHHHHHHHcCCCeEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCcc
Confidence 456678889999999976554443322 23678888899999999999754443
No 375
>PRK13561 putative diguanylate cyclase; Provisional
Probab=49.47 E-value=48 Score=31.55 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=57.7
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEeeeCc--ccccCChhHHHHHHHHHHhCCceecC-ccHHHHHHH
Q 029925 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGG--SHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLIR 97 (185)
Q Consensus 22 R~~GlTmV~D-kG~s~~~g~~~~eDlLe~ag~yID~lKfg~G--Ts~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al~ 97 (185)
|..|....+| -|- |...+..+-....=-+|+||+--. ...-.+..+|+..++++|+.|+.|.- | .
T Consensus 544 ~~~G~~i~lddfG~----g~ssl~~L~~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAeg-------V 612 (651)
T PRK13561 544 RNAGVRVALDDFGM----GYAGLRQLQHMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAEG-------V 612 (651)
T ss_pred HHCCCEEEEECCCC----CcccHHHHhhcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEec-------C
Confidence 5568887776 454 444554443322224899999521 11223567899999999999998775 5 0
Q ss_pred hCCchHHHHHHHHHHcCCCEEEecCCcc---cCChhHHH
Q 029925 98 NGPSAFKEYVEDCKQVGFDTIELNVGSL---EIPEETLL 133 (185)
Q Consensus 98 qg~~~~~~yl~~~k~lGF~~IEISdGti---~i~~~~r~ 133 (185)
.-++-++.++++|++.+- |+. ++|.++..
T Consensus 613 ----E~~~~~~~l~~~g~d~~Q---G~~~~~P~~~~~~~ 644 (651)
T PRK13561 613 ----ETEAQRDWLLKAGVGIAQ---GFLFARALPIEIFE 644 (651)
T ss_pred ----CCHHHHHHHHhcCCCEEe---CCcccCCCCHHHHH
Confidence 112334557889998875 443 55655543
No 376
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=49.26 E-value=1.1e+02 Score=27.63 Aligned_cols=117 Identities=8% Similarity=0.002 Sum_probs=74.4
Q ss_pred eeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-C-Cc
Q 029925 27 TEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN-G-PS 101 (185)
Q Consensus 27 TmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q-g-~~ 101 (185)
|.-+.-|-+..-.+..++.+++..-.+++..+-.==|.-.-|..+-.++++.++++|| .++.| ++-+..+.. | ..
T Consensus 58 tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~ 137 (380)
T PRK09057 58 SIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLH 137 (380)
T ss_pred eEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCC
Confidence 6666666544437889999999998887665432224445677777899999999999 88889 777666643 1 12
Q ss_pred h---HHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCCC
Q 029925 102 A---FKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 102 ~---~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
. +.+-++.+++. |..|-+ --|.=.=+.+++.+-++.+.+.+.
T Consensus 138 ~~~~~~~ai~~~~~~-~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p 184 (380)
T PRK09057 138 SVAEALAAIDLAREI-FPRVSFDLIYARPGQTLAAWRAELKEALSLAA 184 (380)
T ss_pred CHHHHHHHHHHHHHh-CccEEEEeecCCCCCCHHHHHHHHHHHHhcCC
Confidence 3 44456666776 433222 223223334445566777776653
No 377
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=49.03 E-value=1.7e+02 Score=25.17 Aligned_cols=78 Identities=15% Similarity=0.136 Sum_probs=50.6
Q ss_pred hHHHHHHHhhccc-ccEEeeeCcc--------cccCChhHHHHHHHHHHhC-CceecCc-cHHHHHHHhCCchHHHHHHH
Q 029925 41 NVLEDIFESMGQF-VDGLKFSGGS--------HSLMPKPFIEEVVKRAHQH-DVYVSTG-DWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 41 ~~~eDlLe~ag~y-ID~lKfg~GT--------s~l~p~~~L~eKI~l~~~~-gV~v~~G-tlfE~al~qg~~~~~~yl~~ 109 (185)
..+.+..+.+-++ +|++=+-+++ +.....+.+.+.++-.+++ ++++..- +. +.+.+.+..+.
T Consensus 102 ~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~-------~~~~~~~~a~~ 174 (296)
T cd04740 102 EEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTP-------NVTDIVEIARA 174 (296)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCC-------CchhHHHHHHH
Confidence 3444444444455 7777664443 3445567788899999888 7777652 21 11246677788
Q ss_pred HHHcCCCEEEecCCcc
Q 029925 110 CKQVGFDTIELNVGSL 125 (185)
Q Consensus 110 ~k~lGF~~IEISdGti 125 (185)
+.+.|.|.|-++|.+.
T Consensus 175 ~~~~G~d~i~~~nt~~ 190 (296)
T cd04740 175 AEEAGADGLTLINTLK 190 (296)
T ss_pred HHHcCCCEEEEECCCc
Confidence 9999999999886543
No 378
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=48.94 E-value=54 Score=28.91 Aligned_cols=97 Identities=12% Similarity=-0.015 Sum_probs=60.0
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCCh-----------hHHHHHHHHHHhCCceecCccHHHHHHHhCCc-----hHH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPK-----------PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPS-----AFK 104 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~-----------~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~-----~~~ 104 (185)
+.++..+++ =+|.+-+-..+|-.+.+ +.+++-|++++++|+.|..+- |-+..-..+ -++
T Consensus 78 ~die~A~~~---g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~--ed~~r~d~~~~v~~~~~ 152 (279)
T cd07947 78 EDLKLVKEM---GLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHL--EDITRADIYGFVLPFVN 152 (279)
T ss_pred HHHHHHHHc---CcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEE--EcccCCCcccchHHHHH
Confidence 345555554 34555555555544433 236778899999998766432 333332221 456
Q ss_pred HHHHHHHHcCCC-EEEecCCcccCCh-------hHHHHHHHHHHHC
Q 029925 105 EYVEDCKQVGFD-TIELNVGSLEIPE-------ETLLRYVRLVKSA 142 (185)
Q Consensus 105 ~yl~~~k~lGF~-~IEISdGti~i~~-------~~r~~lI~~~~~~ 142 (185)
++++.+.+.|.+ .|=+.|-.--..+ ++-.++++.+++.
T Consensus 153 ~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~ 198 (279)
T cd07947 153 KLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD 198 (279)
T ss_pred HHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHh
Confidence 666667779999 6889887765544 4455888888765
No 379
>PRK06801 hypothetical protein; Provisional
Probab=48.69 E-value=1e+02 Score=27.48 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCChhHHH----HHHHHHHHCCCeecccccc
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPEETLL----RYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~~~r~----~lI~~~~~~Gf~v~~E~G~ 152 (185)
-+.++.|-+.||+.|=+ ||+- +|.++-. ++.+.++..|.-|--|+|.
T Consensus 87 ~e~i~~Ai~~GftSVm~-D~S~-l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~ 137 (286)
T PRK06801 87 FEAVVRALRLGFSSVMF-DGST-LEYEENVRQTREVVKMCHAVGVSVEAELGA 137 (286)
T ss_pred HHHHHHHHHhCCcEEEE-cCCC-CCHHHHHHHHHHHHHHHHHcCCeEEeecCc
Confidence 45677788899999999 4443 4544443 4667778889999888887
No 380
>PRK09059 dihydroorotase; Validated
Probab=48.68 E-value=2.2e+02 Score=26.30 Aligned_cols=126 Identities=14% Similarity=0.096 Sum_probs=69.8
Q ss_pred CCCCceeEecCCCC--CCcchhHHHHHHHhhc--ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC-ccHHHHHH
Q 029925 22 RRFGVTEMRSPHYT--LSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST-GDWAEHLI 96 (185)
Q Consensus 22 R~~GlTmV~DkG~s--~~~g~~~~eDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~-GtlfE~al 96 (185)
...|+|-+++-.-+ ...+...++.+++.+. .++|+.=.|.-|.-..+ +.+.+. ..+.+.||..+. +++ .
T Consensus 88 ~~gGvTtv~~~p~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~-~~l~e~-~~l~~~Gv~~f~~~~~---~- 161 (429)
T PRK09059 88 AAGGVTSIIMMPDTDPVIDDVALVEFVKRTARDTAIVNIHPAAAITKGLAG-EEMTEF-GLLRAAGAVAFTDGRR---S- 161 (429)
T ss_pred HhCCcEEEEeccCCCCCCCCHHHHHHHHHHhcccCcccEEEEeEEecCCCC-cchHHH-HHHHhcCcEEEecCCc---c-
Confidence 44599999885421 2236667888888765 37887654432222222 234443 334577887665 220 0
Q ss_pred HhCCchHHHHHHHHHHcCCCEE------E------ecCC-----------------------------------cccCCh
Q 029925 97 RNGPSAFKEYVEDCKQVGFDTI------E------LNVG-----------------------------------SLEIPE 129 (185)
Q Consensus 97 ~qg~~~~~~yl~~~k~lGF~~I------E------ISdG-----------------------------------ti~i~~ 129 (185)
..+...+.+-+++++++|...+ + ..+| ..-++.
T Consensus 162 ~~~~~~l~~~~~~~~~~~~~v~~H~E~~~l~~~~~~~~~~~~~~~~~~~rP~~aE~~av~r~~~la~~~~~~~hi~hvs~ 241 (429)
T PRK09059 162 VANTQVMRRALTYARDFDAVIVHETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISC 241 (429)
T ss_pred cCCHHHHHHHHHHHHhcCCEEEEecCChhhhcCCCcCCcHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCcEEEEecCC
Confidence 0110124455566666664332 1 1111 124566
Q ss_pred hHHHHHHHHHHHCCCeeccccccc
Q 029925 130 ETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
.+-.++|+++++.|..|..|+-..
T Consensus 242 ~~~~~~i~~ak~~g~~vt~ev~ph 265 (429)
T PRK09059 242 AESAEALRRAKDRGLKVTAGVSIN 265 (429)
T ss_pred HHHHHHHHHHHHCCCCEEEeecHH
Confidence 677899999999999988877654
No 381
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=48.63 E-value=64 Score=30.22 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=69.7
Q ss_pred HHHHHHHhhcccccEEeeeC--------cccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHc
Q 029925 42 VLEDIFESMGQFVDGLKFSG--------GSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQV 113 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~--------GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~l 113 (185)
.++.+++.--+-|.++.=.| +++.-..-+.+.+-++.+++||+.+.. ..|.+..-.++.+-+.++.+.+.
T Consensus 81 ~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~--~~Ed~~rt~~~~l~~~~~~~~~~ 158 (409)
T COG0119 81 DIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF--SAEDATRTDPEFLAEVVKAAIEA 158 (409)
T ss_pred hHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE--EeeccccCCHHHHHHHHHHHHHc
Confidence 34555555555555443333 122222334567788999999987764 34444466666777788888899
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 114 GFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
|.+.|-+-|-.--..+.+-.++|+.+++.
T Consensus 159 ga~~i~l~DTvG~~~P~~~~~~i~~l~~~ 187 (409)
T COG0119 159 GADRINLPDTVGVATPNEVADIIEALKAN 187 (409)
T ss_pred CCcEEEECCCcCccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999987
No 382
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=48.58 E-value=40 Score=30.18 Aligned_cols=43 Identities=26% Similarity=0.421 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHcCCCEEEec----------CCcccCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELN----------VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS----------dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
..++.++.++++||+.|.|- .|..+ -+..-++|++++++|++|
T Consensus 11 ~~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~yd--F~~lD~~l~~a~~~Gi~v 63 (374)
T PF02449_consen 11 EWEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYD--FSWLDRVLDLAAKHGIKV 63 (374)
T ss_dssp HHHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB-----HHHHHHHHHHHCTT-EE
T ss_pred HHHHHHHHHHHcCCCEEEEEEechhhccCCCCeee--cHHHHHHHHHHHhccCeE
Confidence 45555555666666555541 12222 233445566666666666
No 383
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=48.47 E-value=33 Score=31.16 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.-.++.+.+.++|++.||+ |+-..+++++ +.|+.+.+.+...
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv--G~p~~~~~~~-e~i~~i~~~~~~~ 64 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA--GFPIASEGEF-EAIKKISQEGLNA 64 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCCCChHHH-HHHHHHHhcCCCc
Confidence 3456677788889999987 5666677775 6677777766643
No 384
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=48.46 E-value=56 Score=29.14 Aligned_cols=76 Identities=11% Similarity=0.082 Sum_probs=50.7
Q ss_pred cCChhHHHHHHHHHHhCCceecC-----ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhH----HHHHH
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVST-----GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEET----LLRYV 136 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~-----GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~----r~~lI 136 (185)
..+...|+|.++.+++-||.|.. +++-..-+.+ +.++.+..++++|+..|-|. +++=...+ -.+++
T Consensus 69 ~~~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~---~~~~~f~~~~~~Gv~GvKid--F~~~d~Q~~v~~y~~i~ 143 (273)
T PF10566_consen 69 PIPDFDLPELVDYAKEKGVGIWLWYHSETGGNVANLEK---QLDEAFKLYAKWGVKGVKID--FMDRDDQEMVNWYEDIL 143 (273)
T ss_dssp B-TT--HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHC---CHHHHHHHHHHCTEEEEEEE----SSTSHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHH---HHHHHHHHHHHcCCCEEeeC--cCCCCCHHHHHHHHHHH
Confidence 55777899999999999975543 2233333444 46999999999999999883 44444333 34678
Q ss_pred HHHHHCCCee
Q 029925 137 RLVKSAGLKA 146 (185)
Q Consensus 137 ~~~~~~Gf~v 146 (185)
+.|+++.|.|
T Consensus 144 ~~AA~~~Lmv 153 (273)
T PF10566_consen 144 EDAAEYKLMV 153 (273)
T ss_dssp HHHHHTT-EE
T ss_pred HHHHHcCcEE
Confidence 8999999988
No 385
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=48.39 E-value=38 Score=27.00 Aligned_cols=88 Identities=15% Similarity=0.238 Sum_probs=48.9
Q ss_pred HHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCc---eecCccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 42 ~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
..+++++.|=++ .|++=++. ..-...+.+++-++.+++.|+ .+..||-.- + .++.+++-.+.++++||+.
T Consensus 40 ~~e~~v~aa~~~~adiVglS~--l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~v--i--~~~d~~~~~~~l~~~Gv~~ 113 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSS--LYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLV--V--GKQDFPDVEKRFKEMGFDR 113 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEec--ccccCHHHHHHHHHHHHHCCCCCCEEEecCCcC--c--ChhhhHHHHHHHHHcCCCE
Confidence 346666665443 45544432 222233347888888888864 454554211 1 1113444556688899888
Q ss_pred EEecCCcccCChhHHHHHHHHH
Q 029925 118 IELNVGSLEIPEETLLRYVRLV 139 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~ 139 (185)
| ++-|+ +.++-.++|++.
T Consensus 114 v-F~pgt---~~~~iv~~l~~~ 131 (134)
T TIGR01501 114 V-FAPGT---PPEVVIADLKKD 131 (134)
T ss_pred E-ECcCC---CHHHHHHHHHHH
Confidence 7 55565 556666666654
No 386
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=48.30 E-value=81 Score=29.99 Aligned_cols=101 Identities=18% Similarity=0.334 Sum_probs=77.9
Q ss_pred hHHHHHHHhhcccccEE-eeeCcccccCChhHHHHHHHHHHhC-------CceecCc--cHHHHHHHhCCchHHHHHHHH
Q 029925 41 NVLEDIFESMGQFVDGL-KFSGGSHSLMPKPFIEEVVKRAHQH-------DVYVSTG--DWAEHLIRNGPSAFKEYVEDC 110 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~l-Kfg~GTs~l~p~~~L~eKI~l~~~~-------gV~v~~G--tlfE~al~qg~~~~~~yl~~~ 110 (185)
..|.+||+..+. |+++ -+=++ +++|.+...+.|+++.+. .+++-.| .-+..+=... ..++|++.+
T Consensus 212 ~~l~~Ll~~l~~-I~G~~riR~~--~~~P~~~~d~lI~~~~~~~kv~~~lHlPvQsGsd~ILk~M~R~y--t~e~~~~~i 286 (437)
T COG0621 212 PNLADLLRELSK-IPGIERIRFG--SSHPLEFTDDLIEAIAETPKVCPHLHLPVQSGSDRILKRMKRGY--TVEEYLEII 286 (437)
T ss_pred cCHHHHHHHHhc-CCCceEEEEe--cCCchhcCHHHHHHHhcCCcccccccCccccCCHHHHHHhCCCc--CHHHHHHHH
Confidence 468899999888 8743 23333 388999999999999996 4455557 3677765555 799999999
Q ss_pred HHc--CCCEEEecCCcc----cCChhHHHHHHHHHHHCCCee
Q 029925 111 KQV--GFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 111 k~l--GF~~IEISdGti----~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.++ -+.-+-||..+| .=++++..+..+.+++.+|.-
T Consensus 287 ~k~R~~~Pd~~i~tDiIVGFPgETeedFe~tl~lv~e~~fd~ 328 (437)
T COG0621 287 EKLRAARPDIAISTDIIVGFPGETEEDFEETLDLVEEVRFDR 328 (437)
T ss_pred HHHHHhCCCceEeccEEEECCCCCHHHHHHHHHHHHHhCCCE
Confidence 998 688888887666 678889999999999888764
No 387
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=48.16 E-value=44 Score=27.59 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHH-CCCeeccccc
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKS-AGLKAKPKFA 151 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~-~Gf~v~~E~G 151 (185)
.+.++.|++.|-+.|-+......-|. ++..++++.+++ .|+.+.+++.
T Consensus 78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v~ 127 (221)
T PRK01130 78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADCS 127 (221)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeCC
Confidence 45678899999998888654433232 566688888888 7888866543
No 388
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=48.13 E-value=52 Score=26.24 Aligned_cols=51 Identities=14% Similarity=0.144 Sum_probs=29.4
Q ss_pred CChhHHHHHHHHHHhC--CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc
Q 029925 67 MPKPFIEEVVKRAHQH--DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS 124 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~--gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt 124 (185)
++.+.+.+.|+-++.. +|. .+|| | +++. .+.++++.+|+.|+...=.++++
T Consensus 46 lt~eel~~~I~~~~~~~~gVt-~SGG--E--l~~~--~l~~ll~~lk~~Gl~i~l~Tg~~ 98 (147)
T TIGR02826 46 LTPEYLTKTLDKYRSLISCVL-FLGG--E--WNRE--ALLSLLKIFKEKGLKTCLYTGLE 98 (147)
T ss_pred CCHHHHHHHHHHhCCCCCEEE-Eech--h--cCHH--HHHHHHHHHHHCCCCEEEECCCC
Confidence 3444455666655422 233 3343 3 3444 78899999999998763335544
No 389
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=48.02 E-value=2e+02 Score=25.60 Aligned_cols=80 Identities=14% Similarity=0.162 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhcccccEEeeeCcccc------cCChhHHHHHHHHHHhC------Cce----ecCccHHHHHHHhCCchH
Q 029925 40 HNVLEDIFESMGQFVDGLKFSGGSHS------LMPKPFIEEVVKRAHQH------DVY----VSTGDWAEHLIRNGPSAF 103 (185)
Q Consensus 40 ~~~~eDlLe~ag~yID~lKfg~GTs~------l~p~~~L~eKI~l~~~~------gV~----v~~GtlfE~al~qg~~~~ 103 (185)
...+..+++.++++.|++=+-+++-. ....+.+.+.++..++. +++ +.++ +- .. .+
T Consensus 147 ~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~-~~-----~~--~~ 218 (327)
T cd04738 147 VEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPD-LS-----DE--EL 218 (327)
T ss_pred HHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC-CC-----HH--HH
Confidence 34566666777778888888775443 23345566666665542 133 3333 11 11 45
Q ss_pred HHHHHHHHHcCCCEEEecCCcccC
Q 029925 104 KEYVEDCKQVGFDTIELNVGSLEI 127 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti~i 127 (185)
.+..+.|.+.|.+.|.+++.+..+
T Consensus 219 ~~ia~~l~~aGad~I~~~n~~~~~ 242 (327)
T cd04738 219 EDIADVALEHGVDGIIATNTTISR 242 (327)
T ss_pred HHHHHHHHHcCCcEEEEECCcccc
Confidence 677778899999999999987644
No 390
>PLN02784 alpha-amylase
Probab=47.97 E-value=81 Score=32.79 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----------c---C-----ChhHHHHHHHHHHHCCCeeccccccccCCC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL----------E---I-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKS 157 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----------~---i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~ 157 (185)
.+.+-+++++++||++|.|+--+- + | +.++..++|+.+.++|++|...+=..+...
T Consensus 522 ~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~y~lds~yGT~~ELk~LI~a~H~~GIkVIlDiViNH~ag 595 (894)
T PLN02784 522 ELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDLYNLNSRYGTIDELKDLVKSFHEVGIKVLGDAVLNHRCA 595 (894)
T ss_pred HHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccccccCcCcCCHHHHHHHHHHHHHCCCEEEEEECcccccc
Confidence 577778999999999999975322 1 1 457899999999999999987776666543
No 391
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=47.91 E-value=76 Score=26.80 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHhC-CceecC-ccHH-------HHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-CC-hh-------
Q 029925 69 KPFIEEVVKRAHQH-DVYVST-GDWA-------EHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IP-EE------- 130 (185)
Q Consensus 69 ~~~L~eKI~l~~~~-gV~v~~-Gtlf-------E~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i~-~~------- 130 (185)
++.+++-.+++.++ ++.+.. +++. +....+.-+.+...++.|+.+|.+.|=+--|... .+ .+
T Consensus 44 ~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~ 123 (279)
T cd00019 44 KERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIE 123 (279)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHH
Confidence 35677777777777 554443 2211 0111111125777778888888887776555442 11 21
Q ss_pred HHHHHHHHHHHCCCeeccc
Q 029925 131 TLLRYVRLVKSAGLKAKPK 149 (185)
Q Consensus 131 ~r~~lI~~~~~~Gf~v~~E 149 (185)
...++.+.+++.|.++..|
T Consensus 124 ~l~~l~~~a~~~gi~l~lE 142 (279)
T cd00019 124 ALNELIDKAETKGVVIALE 142 (279)
T ss_pred HHHHHHHhccCCCCEEEEe
Confidence 1223344444667766544
No 392
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=47.81 E-value=54 Score=26.67 Aligned_cols=94 Identities=16% Similarity=0.150 Sum_probs=57.8
Q ss_pred hhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHH---HhCCchHHHHHHHHHHcCCC--E--EEec
Q 029925 49 SMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI---RNGPSAFKEYVEDCKQVGFD--T--IELN 121 (185)
Q Consensus 49 ~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al---~qg~~~~~~yl~~~k~lGF~--~--IEIS 121 (185)
.+|-=.=+||-.-|+..+-|. ..+-++-|+++|+.+ |-.+-... ....+..+.|++..+..+.+ . +.|.
T Consensus 20 ~~g~~fv~ikateg~~~~D~~--f~~n~~~A~~aGl~~--G~Yhf~~~~~~~~~~~Qa~~f~~~~~~~~~~~~~i~lDiE 95 (196)
T cd06416 20 NNGYSFAIIRAYRSNGSFDPN--SVTNIKNARAAGLST--DVYFFPCINCCGSAAGQVQTFLQYLKANGIKYGTVWIDIE 95 (196)
T ss_pred hCCceEEEEEEEccCCccChH--HHHHHHHHHHcCCcc--ceEEEecCCCCCCHHHHHHHHHHHHHhCCCceeEEEEEEe
Confidence 345445578888887776655 999999999999866 43211111 11123688899998885443 2 4444
Q ss_pred C--CcccCChhHH----HHHHHHHHHCCCee
Q 029925 122 V--GSLEIPEETL----LRYVRLVKSAGLKA 146 (185)
Q Consensus 122 d--Gti~i~~~~r----~~lI~~~~~~Gf~v 146 (185)
. +....+.... .+++..+++.|.+|
T Consensus 96 ~~~~~~~~~~~~~~~~~~~f~~~~~~~G~~~ 126 (196)
T cd06416 96 QNPCQWSSDVASNCQFLQELVSAAKALGLKV 126 (196)
T ss_pred cCCCCCcCCHHHHHHHHHHHHHHHHHhCCeE
Confidence 3 4434444433 35566667788887
No 393
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=47.79 E-value=54 Score=28.48 Aligned_cols=67 Identities=12% Similarity=0.179 Sum_probs=36.2
Q ss_pred cCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.++.+..++-.+.+++.||.+..=-|-+.. ++.+.++|++.+-|..+.+. -..+++.+++.|..
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~stpfd~~s-----------~d~l~~~~~~~~KIaS~dl~-----n~~lL~~~A~tgkP 115 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFFSTPFDEES-----------VDFLEELGVPAYKIASGDLT-----NLPLLEYIAKTGKP 115 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEEEEE-SHHH-----------HHHHHHHT-SEEEE-GGGTT------HHHHHHHHTT-S-
T ss_pred cCCHHHHHHHHHHHHHcCCEEEECCCCHHH-----------HHHHHHcCCCEEEecccccc-----CHHHHHHHHHhCCc
Confidence 577888999999999999966653332222 22345556666666555443 23455555556655
Q ss_pred ecc
Q 029925 146 AKP 148 (185)
Q Consensus 146 v~~ 148 (185)
|+-
T Consensus 116 vIl 118 (241)
T PF03102_consen 116 VIL 118 (241)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
No 394
>PLN03059 beta-galactosidase; Provisional
Probab=47.75 E-value=34 Score=35.14 Aligned_cols=50 Identities=20% Similarity=0.472 Sum_probs=37.9
Q ss_pred chHHHHHHHHHHcCCCEEE---------ecCCcccC-ChhHHHHHHHHHHHCCCeecccc
Q 029925 101 SAFKEYVEDCKQVGFDTIE---------LNVGSLEI-PEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IE---------ISdGti~i-~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+.-++-|+.+|..||++|| -..|..+. ...+..++|+.|++.||.|+.-.
T Consensus 59 ~~W~d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRp 118 (840)
T PLN03059 59 EMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRI 118 (840)
T ss_pred HHHHHHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecC
Confidence 4567778889999999998 23444443 35778899999999999995433
No 395
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=47.74 E-value=77 Score=27.09 Aligned_cols=114 Identities=12% Similarity=0.123 Sum_probs=66.4
Q ss_pred HHHHhhcccccEEeeeCccccc-CChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEE
Q 029925 45 DIFESMGQFVDGLKFSGGSHSL-MPKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIE 119 (185)
Q Consensus 45 DlLe~ag~yID~lKfg~GTs~l-~p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IE 119 (185)
++++..+---.-|-|=.-=+.+ -..+.+++.++.+|+.||.+.- | |+-= +++.+++-||.|-
T Consensus 110 ~~l~~~~~~~~~l~lEitE~~~~~~~~~~~~~l~~L~~~G~~ialDDFGtG~ss-------------l~~L~~l~~d~iK 176 (256)
T COG2200 110 RLLARLGLPPHRLVLEITESALIDDLDTALALLRQLRELGVRIALDDFGTGYSS-------------LSYLKRLPPDILK 176 (256)
T ss_pred HHHHHhCCCcceEEEEEeCchhhcCHHHHHHHHHHHHHCCCeEEEECCCCCHHH-------------HHHHhhCCCCeEE
Confidence 3344433223344454444443 2333577788888888887775 5 3322 2335568889999
Q ss_pred ecCCccc-CCh-----hHHHHHHHHHHHCCCeeccccccccCC---CCCCCccccccccccc
Q 029925 120 LNVGSLE-IPE-----ETLLRYVRLVKSAGLKAKPKFAVMFNK---SDIPSDRDRAFGAYVA 172 (185)
Q Consensus 120 ISdGti~-i~~-----~~r~~lI~~~~~~Gf~v~~E~G~k~~~---~di~~g~d~~~~~~~~ 172 (185)
|+-.++. |.. .--..+|..+++.|++|..| |+.... .-...|-|-.=|-|++
T Consensus 177 ID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaE-GVEt~~ql~~L~~~G~~~~QGylf~ 237 (256)
T COG2200 177 IDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAE-GVETEEQLDLLRELGCDYLQGYLFS 237 (256)
T ss_pred ECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEe-ecCCHHHHHHHHHcCCCeEeecccc
Confidence 9888773 222 24457889999999999776 443332 1233444444455555
No 396
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 14 GH14 from CAZY comprises enzymes with only one known activity; beta-amylase (3.2.1.2 from EC). A Glu residue has been proposed as a catalytic residue, but it is not known if it is the nucleophile or the proton donor. Beta-amylase [, ] is an enzyme that hydrolyses 1,4-alpha-glucosidic linkages in starch-type polysaccharide substrates so as to remove successive maltose units from the non-reducing ends of the chains. Beta-amylase is present in certain bacteria as well as in plants. Three highly conserved sequence regions are found in all known beta-amylases. The first of these regions is located in the N-terminal section of the enzymes and contains an aspartate which is known [] to be involved in the catalytic mechanism. The second, located in a more central location, is centred around a glutamate which is also involved [] in the catalytic mechanism. The 3D structure of a complex of soybean beta-amylase with an inhibitor (alpha-cyclodextrin) has been determined to 3.0A resolution by X-ray diffraction []. The enzyme folds into large and small domains: the large domain has a (beta alpha)8 super-secondary structural core, while the smaller is formed from two long loops extending from the beta-3 and beta-4 strands of the (beta alpha)8 fold []. The interface of the two domains, together with shorter loops from the (beta alpha)8 core, form a deep cleft, in which the inhibitor binds []. Two maltose molecules also bind in the cleft, one sharing a binding site with alpha-cyclodextrin, and the other sitting more deeply in the cleft [].; GO: 0016161 beta-amylase activity, 0000272 polysaccharide catabolic process; PDB: 1FA2_A 2DQX_A 1WDP_A 1UKP_C 1BYC_A 1BYA_A 1Q6C_A 1V3I_A 1BTC_A 1BYB_A ....
Probab=47.58 E-value=38 Score=31.97 Aligned_cols=81 Identities=14% Similarity=0.156 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhCCceec-CccHHHHHHHhCCch-----HHHHHHHHHHcCCCEEEec---------CCcccCChhHHHHH
Q 029925 71 FIEEVVKRAHQHDVYVS-TGDWAEHLIRNGPSA-----FKEYVEDCKQVGFDTIELN---------VGSLEIPEETLLRY 135 (185)
Q Consensus 71 ~L~eKI~l~~~~gV~v~-~GtlfE~al~qg~~~-----~~~yl~~~k~lGF~~IEIS---------dGti~i~~~~r~~l 135 (185)
.|+.-+..+|+.||.-. .-=|-=++-..+|++ .+++++.+++.|.+.+=|- ..+..||...| +
T Consensus 17 ~~~~~L~~LK~~GV~GVmvdvWWGiVE~~~p~~ydWs~Y~~l~~~vr~~GLk~~~vmsfH~cGgNvgD~~~IpLP~W--v 94 (402)
T PF01373_consen 17 ALEAQLRALKSAGVDGVMVDVWWGIVEGEGPQQYDWSGYRELFEMVRDAGLKLQVVMSFHQCGGNVGDDCNIPLPSW--V 94 (402)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEHHHHTGSSTTB---HHHHHHHHHHHHTT-EEEEEEE-S-BSSSTTSSSEB-S-HH--H
T ss_pred HHHHHHHHHHHcCCcEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeEEEEEeeecCCCCCCCccCCcCCHH--H
Confidence 35555666666666322 222222222333322 4566666666666665554 12444444444 2
Q ss_pred HHHHHHCCCeeccccccc
Q 029925 136 VRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 136 I~~~~~~Gf~v~~E~G~k 153 (185)
.+..++..+.-+-+-|..
T Consensus 95 ~~~~~~~di~ytd~~G~r 112 (402)
T PF01373_consen 95 WEIGKKDDIFYTDRSGNR 112 (402)
T ss_dssp HHHHHHSGGEEE-TTS-E
T ss_pred HhccccCCcEEECCCCCc
Confidence 233333344445544544
No 397
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.57 E-value=38 Score=27.65 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc-------------cCChhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL-------------EIPEETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti-------------~i~~~~r~~lI~~~~~~ 142 (185)
.+.+..+.+++.|||.|||+-|+- .=..+.-.++|+.+++.
T Consensus 68 ~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~ 121 (231)
T cd02801 68 TLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREA 121 (231)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHh
Confidence 444555567788999999997651 12333345667776654
No 398
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=47.54 E-value=1.3e+02 Score=24.42 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=58.8
Q ss_pred hcccccEEeeeCccc---ccCChhHHHHHHHHHHhCCceecCcc--H-----HHHHHHhCCchHHHHHHHHHHcCCC---
Q 029925 50 MGQFVDGLKFSGGSH---SLMPKPFIEEVVKRAHQHDVYVSTGD--W-----AEHLIRNGPSAFKEYVEDCKQVGFD--- 116 (185)
Q Consensus 50 ag~yID~lKfg~GTs---~l~p~~~L~eKI~l~~~~gV~v~~Gt--l-----fE~al~qg~~~~~~yl~~~k~lGF~--- 116 (185)
+|-=.=+||.+-|+. .+-|. ...-++-++++|+.+ |. + -+-+.. ..+.|++.++..+.+
T Consensus 21 ~g~~fviiKateG~~g~~~~D~~--~~~~~~~A~~aGl~~--G~YHf~~~~~~~~a~~----qA~~f~~~~~~~~~~~~~ 92 (191)
T cd06414 21 SGVDFAIIRAGYGGYGELQEDKY--FEENIKGAKAAGIPV--GVYFYSYAVTVAEARE----EAEFVLRLIKGYKLSYPV 92 (191)
T ss_pred CCCCEEEEEEecCCCcccccCHH--HHHHHHHHHHCCCce--EEEEEEEeCCHHHHHH----HHHHHHHHhhccCCCCCe
Confidence 343445899999998 77665 999999999999854 32 1 122222 578889999887654
Q ss_pred EEEecCCcc---cCChhHH----HHHHHHHHHCCCeecc
Q 029925 117 TIELNVGSL---EIPEETL----LRYVRLVKSAGLKAKP 148 (185)
Q Consensus 117 ~IEISdGti---~i~~~~r----~~lI~~~~~~Gf~v~~ 148 (185)
++.+-.... .++..+. .++++++++.|.++..
T Consensus 93 ~lD~E~~~~~~~~~~~~~~~~~~~~f~~~v~~~G~~~~i 131 (191)
T cd06414 93 YYDLEDETQLGAGLSKDQRTDIANAFCETIEAAGYYPGI 131 (191)
T ss_pred EEEeecCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCeEE
Confidence 344433221 1344333 5667888888987743
No 399
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.52 E-value=18 Score=32.57 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHhC-----CceecCccHHHHHHHhCCchHHHHH---HHHHHcCCCEEEecCCcccCC-----hhHHHHHH
Q 029925 70 PFIEEVVKRAHQH-----DVYVSTGDWAEHLIRNGPSAFKEYV---EDCKQVGFDTIELNVGSLEIP-----EETLLRYV 136 (185)
Q Consensus 70 ~~L~eKI~l~~~~-----gV~v~~GtlfE~al~qg~~~~~~yl---~~~k~lGF~~IEISdGti~i~-----~~~r~~lI 136 (185)
..+.|.|+-.++. +|++.+-.+.+ .| ...++++ +.+.+.|+|.|+||.|+...+ +.-...++
T Consensus 193 Rf~~eii~~ir~~~~~~v~vRis~~d~~~----~G-~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~ 267 (337)
T PRK13523 193 RFLREIIDAVKEVWDGPLFVRISASDYHP----GG-LTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFA 267 (337)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecccccCC----CC-CCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHH
Confidence 4556666666664 34444422221 12 1344444 555556999999999985321 22234555
Q ss_pred HHHHHC
Q 029925 137 RLVKSA 142 (185)
Q Consensus 137 ~~~~~~ 142 (185)
+.+++.
T Consensus 268 ~~ik~~ 273 (337)
T PRK13523 268 EHIREH 273 (337)
T ss_pred HHHHhh
Confidence 666554
No 400
>PRK15447 putative protease; Provisional
Probab=47.33 E-value=59 Score=28.74 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc----cCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL----EIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti----~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+++.|...+.+.|.|+|=+..... ..+.++..+.|+.+++.|-+|
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkv 64 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEV 64 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEE
Confidence 677777777777777777764432 367777777777777777766
No 401
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=47.17 E-value=28 Score=31.05 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=41.1
Q ss_pred CCceeEecCCCCCCcchhHHHHHHHhhc-c--cccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHH
Q 029925 24 FGVTEMRSPHYTLSSSHNVLEDIFESMG-Q--FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLI 96 (185)
Q Consensus 24 ~GlTmV~DkG~s~~~g~~~~eDlLe~ag-~--yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al 96 (185)
.++....|=- +. ++..++++++.-+ + =+|..|.|+ +++ .++-+++|++|||.+++|..+|..+
T Consensus 238 ~~~pia~dE~--~~-~~~~~~~~i~~~~~d~~~~d~~~~GG----it~---~~~~~~~a~~~gi~~~~~~~~~s~i 303 (365)
T cd03318 238 NRVPIMADES--VS-GPADAFELARRGAADVFSLKIAKSGG----LRR---AQKVAAIAEAAGIALYGGTMLESSI 303 (365)
T ss_pred cCCCEEcCcc--cC-CHHHHHHHHHhCCCCeEEEeecccCC----HHH---HHHHHHHHHHcCCceeecCcchhHH
Confidence 4566666643 34 7778888887532 1 234444454 332 7888999999999999886446544
No 402
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=47.06 E-value=44 Score=31.78 Aligned_cols=98 Identities=18% Similarity=0.257 Sum_probs=56.2
Q ss_pred CCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHH---HHHHhCCceecCccHHHHHHHhCCchHHHHHH
Q 029925 32 PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVV---KRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVE 108 (185)
Q Consensus 32 kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI---~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~ 108 (185)
|||..++....|..+.+.+| +.|=+=++-.+.. ...|+ ++++++||++.||.. -. . ...++..+
T Consensus 80 pGygflsen~~fae~~~~~g-----l~fiGP~~~~i~~--mgdK~~ar~~~~~aGVP~vpgs~--~~-~---~~~ee~~~ 146 (449)
T COG0439 80 PGYGFLSENAAFAEACAEAG-----LTFIGPSAEAIRR--MGDKITARRLMAKAGVPVVPGSD--GA-V---ADNEEALA 146 (449)
T ss_pred ccchhhhCCHHHHHHHHHcC-----CeeeCcCHHHHHH--hhhHHHHHHHHHHcCCCcCCCCC--CC-c---CCHHHHHH
Confidence 66655445667777777777 3333333333322 44444 567888888888751 00 1 13477778
Q ss_pred HHHHcCCCEE-EecCCcc------cCChhHHHHHHHHHHHC
Q 029925 109 DCKQVGFDTI-ELNVGSL------EIPEETLLRYVRLVKSA 142 (185)
Q Consensus 109 ~~k~lGF~~I-EISdGti------~i~~~~r~~lI~~~~~~ 142 (185)
.+++.||..| .=+.|-- -=+.++....+..+++.
T Consensus 147 ~a~~iGyPVivKa~~GgGg~G~r~v~~~~el~~a~~~~~~e 187 (449)
T COG0439 147 IAEEIGYPVIVKAAAGGGGRGMRVVRNEEELEAAFEAARGE 187 (449)
T ss_pred HHHHcCCCEEEEECCCCCcccEEEECCHHHHHHHHHHHHHH
Confidence 8888887764 4444432 22456666666666554
No 403
>PRK11440 putative hydrolase; Provisional
Probab=46.94 E-value=64 Score=25.94 Aligned_cols=78 Identities=9% Similarity=0.078 Sum_probs=57.3
Q ss_pred cccccEEeeeCcccccCChhHHHHHHHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 029925 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 128 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~ 128 (185)
++++ +-|-.++. ++..+ |.+ +++++|| .+. .|-..+.|+.+- ...+.++||+.+=++|++-+.+
T Consensus 95 ~d~v-i~K~~~sa--F~~T~-L~~---~L~~~gi~~lii~Gv~T~~CV~~T-------a~~A~~~gy~v~vv~Da~as~~ 160 (188)
T PRK11440 95 SDIE-VTKRQWGA--FYGTD-LEL---QLRRRGIDTIVLCGISTNIGVEST-------ARNAWELGFNLVIAEDACSAAS 160 (188)
T ss_pred CCEE-EecCCcCC--CCCCC-HHH---HHHHCCCCEEEEeeechhHHHHHH-------HHHHHHCCCEEEEechhhcCCC
Confidence 3443 66876544 44433 444 4578999 333 488999999884 2568899999999999999999
Q ss_pred hhHHHHHHHHHHHC
Q 029925 129 EETLLRYVRLVKSA 142 (185)
Q Consensus 129 ~~~r~~lI~~~~~~ 142 (185)
.+.....++.+...
T Consensus 161 ~~~h~~al~~~~~~ 174 (188)
T PRK11440 161 AEQHQNSMNHIFPR 174 (188)
T ss_pred HHHHHHHHHHHHhh
Confidence 99988888887654
No 404
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=46.92 E-value=44 Score=28.92 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=41.8
Q ss_pred HHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccC-CCCCCCccc
Q 029925 107 VEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN-KSDIPSDRD 164 (185)
Q Consensus 107 l~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~-~~di~~g~d 164 (185)
++++.+.|-|+|=+.... ++.++..++++.+++.|+.+..|+--... .....+|+|
T Consensus 126 i~~a~~~GAD~VlLi~~~--l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gad 182 (260)
T PRK00278 126 IYEARAAGADAILLIVAA--LDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAP 182 (260)
T ss_pred HHHHHHcCCCEEEEEecc--CCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCC
Confidence 677999999999998777 46788889999999999998777654321 123344555
No 405
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=46.84 E-value=36 Score=30.80 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
.-.++++.+.++||+.||+. +-.+++.++ +.++.+.+.+..
T Consensus 24 ~k~~ia~~L~~~Gv~~IEvG--~p~~~~~~~-e~i~~i~~~~~~ 64 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEVG--IPAMGEEER-AVIRAIVALGLP 64 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEe--CCCCCHHHH-HHHHHHHHcCCC
Confidence 44577788889999999994 555666665 667777766543
No 406
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.74 E-value=42 Score=22.20 Aligned_cols=17 Identities=29% Similarity=0.356 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHCCCee
Q 029925 130 ETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (185)
++..++++.+++.|++|
T Consensus 53 ~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 53 EDRERAKEILKEAGYEV 69 (69)
T ss_pred HHHHHHHHHHHHcCCcC
Confidence 46678999999999875
No 407
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=46.66 E-value=1.8e+02 Score=25.54 Aligned_cols=114 Identities=14% Similarity=0.267 Sum_probs=67.0
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHH---hCCc--eecCc--cHHHHHHHh
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAH---QHDV--YVSTG--DWAEHLIRN 98 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~---~~gV--~v~~G--tlfE~al~q 98 (185)
.|.-+..|-+.......+.++++.+-.+-+.+-+..+|. |..+-++++++++ +.|+ .++.| +.-+..+..
T Consensus 79 ~~iyf~ggt~t~l~~~~L~~l~~~i~~~~~~~~isi~tr---pd~l~~e~l~~L~~l~~~G~~~~i~lGlQS~~d~~L~~ 155 (302)
T TIGR01212 79 FIAYFQAYTNTYAPVEVLKEMYEQALSYDDVVGLSVGTR---PDCVPDEVLDLLAEYVERGYEVWVELGLQTAHDKTLKK 155 (302)
T ss_pred EEEEEECCCcCCCCHHHHHHHHHHHhCCCCEEEEEEEec---CCcCCHHHHHHHHHhhhCCceEEEEEccCcCCHHHHHH
Confidence 345565564443477899999999888767777766653 4433444555555 4576 47777 554444422
Q ss_pred ---C--CchHHHHHHHHHHcCCCEEEecCCcc-cC---ChhHHHHHHHHHHHCCCe
Q 029925 99 ---G--PSAFKEYVEDCKQVGFDTIELNVGSL-EI---PEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 99 ---g--~~~~~~yl~~~k~lGF~~IEISdGti-~i---~~~~r~~lI~~~~~~Gf~ 145 (185)
+ .+.+.+-++.+++.|+. |+...| -+ +.++..+.++.+.+.+..
T Consensus 156 i~Rg~t~~~~~~ai~~l~~~gi~---v~~~lI~GlPget~e~~~~t~~~l~~l~~d 208 (302)
T TIGR01212 156 INRGHDFACYVDAVKRARKRGIK---VCSHVILGLPGEDREEMMETAKIVSLLDVD 208 (302)
T ss_pred HcCcChHHHHHHHHHHHHHcCCE---EEEeEEECCCCCCHHHHHHHHHHHHhcCCC
Confidence 1 11345556667778875 444333 44 445555666666666544
No 408
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=46.64 E-value=19 Score=30.32 Aligned_cols=41 Identities=15% Similarity=0.312 Sum_probs=33.0
Q ss_pred CCceecC-c-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh
Q 029925 82 HDVYVST-G-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (185)
Q Consensus 82 ~gV~v~~-G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (185)
|+|.++- | |+...++.++ |++|+++|++-|.|+-..-.++.
T Consensus 103 Y~VrPseR~KGYA~emLkl~-------L~~ar~lgi~~Vlvtcd~dN~AS 145 (174)
T COG3981 103 YSVRPSERRKGYAKEMLKLA-------LEKARELGIKKVLVTCDKDNIAS 145 (174)
T ss_pred ceeChhhhccCHHHHHHHHH-------HHHHHHcCCCeEEEEeCCCCchh
Confidence 5666666 7 8999888886 88999999999999876665544
No 409
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.51 E-value=75 Score=20.20 Aligned_cols=46 Identities=20% Similarity=0.387 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHcCCCEEEec---------CCc------ccCCh-hHHHHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELN---------VGS------LEIPE-ETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEIS---------dGt------i~i~~-~~r~~lI~~~~~~Gf~v~ 147 (185)
.+.+.++.+.+.|.+..++. ++. ++.+. ++...+++.+++.|++|.
T Consensus 11 ~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~~g~~~~ 72 (73)
T cd04886 11 QLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREAGYDVR 72 (73)
T ss_pred hHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHHcCCEEe
Confidence 56666666677777666443 122 23333 666799999999999874
No 410
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=46.49 E-value=1.1e+02 Score=26.64 Aligned_cols=92 Identities=14% Similarity=0.224 Sum_probs=47.0
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI 120 (185)
..+-+.|..+| ||.|=+|+..+. |. ..+-++.+.+.+.....-+|. . .-.+.++.+.+.|.+.|.+
T Consensus 25 ~~i~~~L~~~G--v~~IEvG~P~~~--~~--~~~~~~~l~~~~~~~~v~~~~-----r---~~~~di~~a~~~g~~~i~i 90 (262)
T cd07948 25 IEIAKALDAFG--VDYIELTSPAAS--PQ--SRADCEAIAKLGLKAKILTHI-----R---CHMDDARIAVETGVDGVDL 90 (262)
T ss_pred HHHHHHHHHcC--CCEEEEECCCCC--HH--HHHHHHHHHhCCCCCcEEEEe-----c---CCHHHHHHHHHcCcCEEEE
Confidence 34556667777 777777764332 22 344444444443321111231 2 1233466667777777777
Q ss_pred cCCc--------ccCChhH----HHHHHHHHHHCCCee
Q 029925 121 NVGS--------LEIPEET----LLRYVRLVKSAGLKA 146 (185)
Q Consensus 121 SdGt--------i~i~~~~----r~~lI~~~~~~Gf~v 146 (185)
.... ...+.++ -.++|+.+++.|++|
T Consensus 91 ~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v 128 (262)
T cd07948 91 VFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEV 128 (262)
T ss_pred EEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 4321 1222222 445567777777766
No 411
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=46.45 E-value=41 Score=26.70 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=43.1
Q ss_pred HHHHHHHhhccc-ccEEeeeCcccccCChhHHHHHHHHHHhCCc---eecCcc-HHHHHHHhCCchHHHHHHHHHHcCCC
Q 029925 42 VLEDIFESMGQF-VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGD-WAEHLIRNGPSAFKEYVEDCKQVGFD 116 (185)
Q Consensus 42 ~~eDlLe~ag~y-ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~Gt-lfE~al~qg~~~~~~yl~~~k~lGF~ 116 (185)
..+.+++.|-++ .|++=++. ..-...+.+++-+++++++|+ ++.-|| .. -.++..++..++++++||+
T Consensus 38 ~~e~~v~aa~~~~adiVglS~--L~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~-----i~~~d~~~~~~~L~~~Gv~ 110 (128)
T cd02072 38 PQEEFIDAAIETDADAILVSS--LYGHGEIDCKGLREKCDEAGLKDILLYVGGNLV-----VGKQDFEDVEKRFKEMGFD 110 (128)
T ss_pred CHHHHHHHHHHcCCCEEEEec--cccCCHHHHHHHHHHHHHCCCCCCeEEEECCCC-----CChhhhHHHHHHHHHcCCC
Confidence 356666666554 45554443 112222347888888888865 444454 21 1123556677788889998
Q ss_pred EEEecCCc
Q 029925 117 TIELNVGS 124 (185)
Q Consensus 117 ~IEISdGt 124 (185)
.| +.-|+
T Consensus 111 ~v-f~pgt 117 (128)
T cd02072 111 RV-FAPGT 117 (128)
T ss_pred EE-ECcCC
Confidence 87 44444
No 412
>PRK12394 putative metallo-dependent hydrolase; Provisional
Probab=46.44 E-value=40 Score=30.18 Aligned_cols=47 Identities=17% Similarity=0.212 Sum_probs=35.1
Q ss_pred hHHHHHHHhhcccccEEeeeC--cccccCChhHHHHHHHHHHhCCceec
Q 029925 41 NVLEDIFESMGQFVDGLKFSG--GSHSLMPKPFIEEVVKRAHQHDVYVS 87 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~--GTs~l~p~~~L~eKI~l~~~~gV~v~ 87 (185)
.+.+++++...+.++.+|+-+ +.+..++.+.+++.+++++++|+++.
T Consensus 142 ~~~~~~~~~~~~~~~g~ki~~~~~~~~~~~~~~l~~~~~~A~~~g~~v~ 190 (379)
T PRK12394 142 NKIHALFRQYRNVLQGLKLRVQTEDIAEYGLKPLTETLRIANDLRCPVA 190 (379)
T ss_pred HHHHHHHHHCcCcEEEEEEEEecccccccchHHHHHHHHHHHHcCCCEE
Confidence 466677776666677777664 44446778899999999999997664
No 413
>PRK13561 putative diguanylate cyclase; Provisional
Probab=46.40 E-value=41 Score=31.97 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=38.1
Q ss_pred HHHHcCCCEEEecCCccc-C--ChhHHHHHHHHHHHCCCeeccccccccCC---CCCCCcccccccccccc
Q 029925 109 DCKQVGFDTIELNVGSLE-I--PEETLLRYVRLVKSAGLKAKPKFAVMFNK---SDIPSDRDRAFGAYVAR 173 (185)
Q Consensus 109 ~~k~lGF~~IEISdGti~-i--~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~---~di~~g~d~~~~~~~~~ 173 (185)
..+++.+|.|-|+-.++. + +..--..+++.+++.|++|..| |+...+ .--..|-|-.=|-|+.+
T Consensus 567 ~l~~l~~d~lKiD~s~i~~i~~~~~~v~~i~~~a~~l~i~viAe-gVE~~~~~~~l~~~g~d~~QG~~~~~ 636 (651)
T PRK13561 567 HMKSLPIDVLKIDKMFVDGLPEDDSMVAAIIMLAQSLNLQVIAE-GVETEAQRDWLLKAGVGIAQGFLFAR 636 (651)
T ss_pred hcCCCCCcEEEECHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEe-cCCCHHHHHHHHhcCCCEEeCCcccC
Confidence 345566777777644432 2 2233456788899999999876 555443 23345556555656553
No 414
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=46.38 E-value=54 Score=30.60 Aligned_cols=98 Identities=18% Similarity=0.295 Sum_probs=65.8
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-C
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-G 99 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g 99 (185)
+-.|-|=.+ ..+=.|+.+-.=+|-+-+-=|.- =. ++.+++.++.|+++||++--| | |=...+.+ |
T Consensus 81 iPlvADIHF-------d~~lAl~a~~~G~~~iRINPGNi--g~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg 151 (360)
T PRK00366 81 VPLVADIHF-------DYRLALAAAEAGADALRINPGNI--GKRDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYG 151 (360)
T ss_pred CCEEEecCC-------CHHHHHHHHHhCCCEEEECCCCC--CchHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcC
Confidence 445555555 22333444444488888887774 33 567999999999999988765 3 43333332 2
Q ss_pred -C------chHHHHHHHHHHcCCCEEEecCCcccCChhHH
Q 029925 100 -P------SAFKEYVEDCKQVGFDTIELNVGSLEIPEETL 132 (185)
Q Consensus 100 -~------~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r 132 (185)
| .+.-++++.|.++||+-|=||--+-+.+.--.
T Consensus 152 ~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ 191 (360)
T PRK00366 152 EPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIA 191 (360)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHH
Confidence 1 13567899999999999999987777665433
No 415
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=45.96 E-value=75 Score=27.57 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=32.0
Q ss_pred HHHHHHHHHhC-CceecC--ccH-----HHHHHHhCCc----hHHHHHHHHHHcCCCEEEecC
Q 029925 72 IEEVVKRAHQH-DVYVST--GDW-----AEHLIRNGPS----AFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 72 L~eKI~l~~~~-gV~v~~--Gtl-----fE~al~qg~~----~~~~yl~~~k~lGF~~IEISd 122 (185)
+++..++.+++ ++++.+ |+| |..++. ++. -++..++.+++.|||.|.|.=
T Consensus 54 ~~~~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~-~~~~r~~fi~~i~~~~~~~~~DGidiDw 115 (334)
T smart00636 54 FGQLKALKKKNPGLKVLLSIGGWTESDNFSSMLS-DPASRKKFIDSIVSFLKKYGFDGIDIDW 115 (334)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCcchhHHHC-CHHHHHHHHHHHHHHHHHcCCCeEEECC
Confidence 45555555554 887776 653 444332 111 356777888999999999963
No 416
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=45.93 E-value=92 Score=24.57 Aligned_cols=98 Identities=13% Similarity=0.118 Sum_probs=50.6
Q ss_pred ccCChhHHHHHHHHHHhCCceec--CccHHHHHHHhCCchHHHHHHHHHHcCCCEE-----Ee-cCCccc-------CCh
Q 029925 65 SLMPKPFIEEVVKRAHQHDVYVS--TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTI-----EL-NVGSLE-------IPE 129 (185)
Q Consensus 65 ~l~p~~~L~eKI~l~~~~gV~v~--~GtlfE~al~qg~~~~~~yl~~~k~lGF~~I-----EI-SdGti~-------i~~ 129 (185)
.++|. ..+.++.+++.|+.++ ++++-+.+ .. .++.+|++.+ ++ .||... ...
T Consensus 87 ~~~~~--~~~~l~~l~~~g~~v~ivS~s~~~~v-~~----------~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g 153 (202)
T TIGR01490 87 ILYPE--ARDLIRWHKAEGHTIVLVSASLTILV-KP----------LARILGIDNAIGTRLEESEDGIYTGNIDGNNCKG 153 (202)
T ss_pred hccHH--HHHHHHHHHHCCCEEEEEeCCcHHHH-HH----------HHHHcCCcceEecceEEcCCCEEeCCccCCCCCC
Confidence 35554 7888888888887554 34432211 11 1345666643 33 233221 123
Q ss_pred hHHHHHHHHH-HHCCCeeccccccccCCCCCCCccccccccccccCC
Q 029925 130 ETLLRYVRLV-KSAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAP 175 (185)
Q Consensus 130 ~~r~~lI~~~-~~~Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~~~ 175 (185)
+.|.+.++.. ++.|+.+.--+-+-+...|++....--..-.+.|.+
T Consensus 154 ~~K~~~l~~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~ 200 (202)
T TIGR01490 154 EGKVHALAELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK 200 (202)
T ss_pred hHHHHHHHHHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence 5566666654 455765433334556666776655444444555544
No 417
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=45.76 E-value=17 Score=31.79 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred cCChhHHHHHHHHHHHCCCeecccccc
Q 029925 126 EIPEETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 126 ~i~~~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
..+.++-.++|+.|+++|..|+||+-.
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPeid~ 95 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPEIDT 95 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCceeeeccC
Confidence 788899999999999999999999865
No 418
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=45.69 E-value=1.2e+02 Score=27.02 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
++.++|+ +.|++++-.-++-..+|..+|.++....+.. +.+....
T Consensus 90 ~l~~~L~---~~G~~V~lTR~~D~~vsL~~R~~~An~~~AD-lFISIH~ 134 (287)
T PRK10319 90 NVRSILR---NHGIDARLTRSGDTFIPLYDRVEIAHKHGAD-LFMSIHA 134 (287)
T ss_pred HHHHHHH---HCCCEEEEeCCCCCCCCHHHHHHHHHhcCCC-EEEEecC
Confidence 4455554 4599999999999999999999888875443 6665443
No 419
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=45.68 E-value=32 Score=31.96 Aligned_cols=84 Identities=17% Similarity=0.211 Sum_probs=50.9
Q ss_pred chhHHHHHHHhh-ccc--ccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-c---HHHHHH---------HhC--C
Q 029925 39 SHNVLEDIFESM-GQF--VDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-D---WAEHLI---------RNG--P 100 (185)
Q Consensus 39 g~~~~eDlLe~a-g~y--ID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-t---lfE~al---------~qg--~ 100 (185)
+++.++++++.- -++ +|..|.|+ +++ .++..++|+.|||.++|+ + ....+. ..+ +
T Consensus 305 ~~~~~~~ll~~~a~dil~~d~~~~GG----it~---~~kia~lA~a~gi~~~pH~s~~~~~a~~~~~~~~~~~~~~~~~~ 377 (415)
T cd03324 305 NRVVFKQLLQAGAIDVVQIDSCRLGG----VNE---NLAVLLMAAKFGVPVCPHAGGVGLCELVQHLSMIDYICVSGSKE 377 (415)
T ss_pred CHHHHHHHHHcCCCCEEEeCccccCC----HHH---HHHHHHHHHHcCCeEEEcCCHHHHHHHHHHhhcccccccCCccc
Confidence 777888888743 232 24445555 332 678899999999999985 2 233221 111 1
Q ss_pred chHHHHHHHHHHcCCCEEEecCCcccCCh
Q 029925 101 SAFKEYVEDCKQVGFDTIELNVGSLEIPE 129 (185)
Q Consensus 101 ~~~~~yl~~~k~lGF~~IEISdGti~i~~ 129 (185)
+.+-+|++...++=.+-+++.||.+.+|.
T Consensus 378 ~~~~e~~~~~~~~~~~~~~~~dG~l~lp~ 406 (415)
T cd03324 378 GRVIEYVDHLHEHFVYPVVIQNGAYMPPT 406 (415)
T ss_pred cchhhhHHHHHhhccCCCeeeCCEEECCC
Confidence 12345554444443456788888888875
No 420
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=45.57 E-value=65 Score=27.24 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---------CceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 029925 72 IEEVVKRAHQH---------DVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (185)
Q Consensus 72 L~eKI~l~~~~---------gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (185)
+++.++.+.+. ||.++.| |-.++-. -+.+.++.||+.|+...=.++|+. +.+...+++..+
T Consensus 21 ~eel~~~~~~~~~f~~~sggGVt~SGG---EPllq~~--fl~~l~~~~k~~gi~~~leTnG~~--~~~~~~~l~~~~ 90 (213)
T PRK10076 21 LDALEREVMKDDIFFRTSGGGVTLSGG---EVLMQAE--FATRFLQRLRLWGVSCAIETAGDA--PASKLLPLAKLC 90 (213)
T ss_pred HHHHHHHHHhhhHhhcCCCCEEEEeCc---hHHcCHH--HHHHHHHHHHHcCCCEEEECCCCC--CHHHHHHHHHhc
No 421
>PRK07374 dnaE DNA polymerase III subunit alpha; Validated
Probab=45.42 E-value=37 Score=36.06 Aligned_cols=50 Identities=24% Similarity=0.392 Sum_probs=38.5
Q ss_pred HHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecc
Q 029925 96 IRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 96 l~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
+..|..+++++++.|+++|+++|=|+|-..- .--.+..+.+++.|++++.
T Consensus 14 lLdg~~~i~elv~~A~~~G~~alAiTDh~~l---~G~~~f~~~~~~~gIkpIi 63 (1170)
T PRK07374 14 LLDGASQLPKMVERAKELGMPAIALTDHGVM---YGAIELLKLCKGKGIKPII 63 (1170)
T ss_pred hhhccCCHHHHHHHHHHCCCCEEEEecCCch---HHHHHHHHHHHHcCCeEEE
Confidence 4466668999999999999999999984321 3334677888899998865
No 422
>PLN02621 nicotinamidase
Probab=45.30 E-value=65 Score=26.32 Aligned_cols=82 Identities=15% Similarity=0.012 Sum_probs=58.8
Q ss_pred cccccEEeeeCcccccCChhHHHHHHHHHHhCCce--ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCC
Q 029925 51 GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIP 128 (185)
Q Consensus 51 g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~ 128 (185)
++++ +.|- ..|++.+.+ |.+ .++++||. +..|--.++|+.+- ...+.++||+.+=++|++-+.+
T Consensus 101 ~~~v-i~K~--~~saf~~t~-L~~---~L~~~gi~~lvi~Gv~T~~CV~~T-------a~~a~~~gy~v~v~~Da~as~~ 166 (197)
T PLN02621 101 PDEV-VEKS--TYSAFYNTR-LEE---RLRKIGVKEVIVTGVMTNLCCETT-------AREAFVRGFRVFFSTDATATAN 166 (197)
T ss_pred CCEE-EECC--CcCCCCCCc-HHH---HHHHCCCCEEEEEecccchhHHHH-------HHHHHHCCCEEEEeccccCCCC
Confidence 4443 4464 445555542 433 46789983 44477888888874 3557789999999999999999
Q ss_pred hhHHHHHHHHHHHCCCee
Q 029925 129 EETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 129 ~~~r~~lI~~~~~~Gf~v 146 (185)
++.....++..+..+-.|
T Consensus 167 ~~~h~~al~~~~~~~~~v 184 (197)
T PLN02621 167 EELHEATLKNLAYGFAYL 184 (197)
T ss_pred HHHHHHHHHHHHhhceEe
Confidence 998888899888876544
No 423
>PRK09389 (R)-citramalate synthase; Provisional
Probab=45.23 E-value=38 Score=32.26 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.--++.+.+.++||+.||+ |+-..+++++ +.++.+.+.++.+
T Consensus 25 ~K~~ia~~L~~~Gv~~IE~--G~p~~~~~d~-e~v~~i~~~~~~~ 66 (488)
T PRK09389 25 EKLEIARKLDELGVDVIEA--GSAITSEGER-EAIKAVTDEGLNA 66 (488)
T ss_pred HHHHHHHHHHHcCCCEEEE--eCCcCCHHHH-HHHHHHHhcCCCc
Confidence 4457778889999999999 4555667776 6677777766543
No 424
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=45.12 E-value=50 Score=26.38 Aligned_cols=49 Identities=14% Similarity=0.213 Sum_probs=38.4
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCcee--cCcc
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYV--STGD 90 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v--~~Gt 90 (185)
...++.+.+....++++.|=|.+|= +.+ +.|.+-++.+|++|+.+ .+|+
T Consensus 47 t~eel~~~I~~~~~~~~gVt~SGGE--l~~-~~l~~ll~~lk~~Gl~i~l~Tg~ 97 (147)
T TIGR02826 47 TPEYLTKTLDKYRSLISCVLFLGGE--WNR-EALLSLLKIFKEKGLKTCLYTGL 97 (147)
T ss_pred CHHHHHHHHHHhCCCCCEEEEechh--cCH-HHHHHHHHHHHHCCCCEEEECCC
Confidence 4557777777777889999999999 444 35999999999988854 5674
No 425
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=44.82 E-value=1.4e+02 Score=28.23 Aligned_cols=105 Identities=14% Similarity=0.166 Sum_probs=63.0
Q ss_pred chhHHHHHHHhhc--ccccEEeeeCcccccCChhHHHHHHHHHHhC-Cce-ecCccHHHHHHHhCCchHHHHHHHHHHcC
Q 029925 39 SHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH-DVY-VSTGDWAEHLIRNGPSAFKEYVEDCKQVG 114 (185)
Q Consensus 39 g~~~~eDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~-gV~-v~~GtlfE~al~qg~~~~~~yl~~~k~lG 114 (185)
....++.+++-.. .-|.-|-|++|=..+.+.+.|+.-++.+++. +|. +..||=.=+++-+- --++.++.+++.+
T Consensus 139 s~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~P~R--IT~ell~~Lk~~~ 216 (417)
T TIGR03820 139 SKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVLPQR--ITDELVAILKKHH 216 (417)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeeccccccccc--cCHHHHHHHHhcC
Confidence 3445555555332 2466677888888888877777766776665 553 33454322332221 2356777777777
Q ss_pred CCEEEec-CCcccCChhHHHHHHHHHHHCCCee
Q 029925 115 FDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 115 F~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
..+|=++ |+--++..+.+ +.|+++++.|..+
T Consensus 217 ~~~v~~h~nhp~Eit~~a~-~Al~~L~~aGI~l 248 (417)
T TIGR03820 217 PVWLNTHFNHPREITASSK-KALAKLADAGIPL 248 (417)
T ss_pred CeEEEEeCCChHhChHHHH-HHHHHHHHcCCEE
Confidence 6666554 33345554444 7888888888776
No 426
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=44.62 E-value=56 Score=30.47 Aligned_cols=82 Identities=24% Similarity=0.421 Sum_probs=54.5
Q ss_pred cccccEEeeeCcccc------cCC-hhHHHHHHHHHHhCCceecCc---c-HHHHHHHh-CC------chHHHHHHHHHH
Q 029925 51 GQFVDGLKFSGGSHS------LMP-KPFIEEVVKRAHQHDVYVSTG---D-WAEHLIRN-GP------SAFKEYVEDCKQ 112 (185)
Q Consensus 51 g~yID~lKfg~GTs~------l~p-~~~L~eKI~l~~~~gV~v~~G---t-lfE~al~q-g~------~~~~~yl~~~k~ 112 (185)
.+++|-+-+-=|.-. +-+ ++.+++.++.|+++||++--| | |=+..+.+ ++ .+.-++++.|.+
T Consensus 92 ~~~v~kiRINPGNi~~~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~~~ky~~t~~amvesA~~~~~~le~ 171 (359)
T PF04551_consen 92 IEAVDKIRINPGNIVDEFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDILEKYGPTPEAMVESALEHVRILEE 171 (359)
T ss_dssp HHC-SEEEE-TTTSS----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCeEEECCCcccccccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 334999999888852 244 788999999999999988765 3 33322221 11 156789999999
Q ss_pred cCCCEEEecCCcccCChhHH
Q 029925 113 VGFDTIELNVGSLEIPEETL 132 (185)
Q Consensus 113 lGF~~IEISdGti~i~~~~r 132 (185)
+||+-|=||--+-+++.--+
T Consensus 172 ~~f~~iviSlKsSdv~~~i~ 191 (359)
T PF04551_consen 172 LGFDDIVISLKSSDVPETIE 191 (359)
T ss_dssp CT-GGEEEEEEBSSHHHHHH
T ss_pred CCCCcEEEEEEeCChHHHHH
Confidence 99999999977766655433
No 427
>PRK05673 dnaE DNA polymerase III subunit alpha; Validated
Probab=44.57 E-value=39 Score=35.72 Aligned_cols=50 Identities=22% Similarity=0.406 Sum_probs=38.8
Q ss_pred HHHhCCchHHHHHHHHHHcCCCEEEecC-CcccCChhHHHHHHHHHHHCCCeecc
Q 029925 95 LIRNGPSAFKEYVEDCKQVGFDTIELNV-GSLEIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 95 al~qg~~~~~~yl~~~k~lGF~~IEISd-Gti~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
.+..|..+++++++.|+++|+++|=|+| +++ .--.+..+.+++.|++++.
T Consensus 12 SlLdg~~~i~elv~~A~e~G~~avAiTDH~~l----~g~~~f~~~a~~~gIkpIi 62 (1135)
T PRK05673 12 SLLDGAAKIKPLVKKAAELGMPAVALTDHGNL----FGAVEFYKAAKGAGIKPII 62 (1135)
T ss_pred chhhhcCCHHHHHHHHHHcCCCEEEEEcCCcc----HHHHHHHHHHHHcCCeEEE
Confidence 3446667899999999999999999998 444 2334667888899999864
No 428
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=44.47 E-value=22 Score=31.95 Aligned_cols=100 Identities=19% Similarity=0.179 Sum_probs=0.0
Q ss_pred eCcccccCChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHHHHHcCC-CEEEecCCcccCChhHHHHHH
Q 029925 60 SGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVEDCKQVGF-DTIELNVGSLEIPEETLLRYV 136 (185)
Q Consensus 60 g~GTs~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~~k~lGF-~~IEISdGti~i~~~~r~~lI 136 (185)
+....-.|..+.+++.++.|+++||.|.| -..-.....-. ...++.......-. ..++++.+.+++..++=.+++
T Consensus 65 ~~~~~~~YT~~di~elv~yA~~rgI~vIPEiD~PGH~~a~~~--~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl 142 (329)
T cd06568 65 GGGPGGYYTQEDYKDIVAYAAERHITVVPEIDMPGHTNAALA--AYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFV 142 (329)
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCEEEEecCCcHHHHHHHH--hChhhccCCCCCccccccCCCCcccCCCCHHHHHHH
Q ss_pred HHHHHCCCeeccccccccCCCCCCCccccccc
Q 029925 137 RLVKSAGLKAKPKFAVMFNKSDIPSDRDRAFG 168 (185)
Q Consensus 137 ~~~~~~Gf~v~~E~G~k~~~~di~~g~d~~~~ 168 (185)
+. +..|+---|+..-|--|+||.+.
T Consensus 143 ~~-------v~~E~~~~f~~~~iHiGgDE~~~ 167 (329)
T cd06568 143 DD-------VFRELAALTPGPYIHIGGDEAHS 167 (329)
T ss_pred HH-------HHHHHHHhCCCCeEEEecccCCC
No 429
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=44.43 E-value=22 Score=30.50 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccC--------ChhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEI--------PEETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i--------~~~~r~~lI~~~~~~ 142 (185)
.+.+..+.+.+.|+++|||+-++-.. ..+.-.++|+.+++.
T Consensus 112 ~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~ 160 (289)
T cd02810 112 DYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAA 160 (289)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHc
Confidence 34444555666677777776554322 223344566666654
No 430
>cd01302 Cyclic_amidohydrolases Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.
Probab=44.37 E-value=2.1e+02 Score=25.30 Aligned_cols=122 Identities=13% Similarity=0.087 Sum_probs=65.0
Q ss_pred CCCceeEecCCC--CCCcchhHHHHHHHhhc--ccccEEeeeCcccccCChhHHHHHHHHHHhCC---ceecCc----cH
Q 029925 23 RFGVTEMRSPHY--TLSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTG----DW 91 (185)
Q Consensus 23 ~~GlTmV~DkG~--s~~~g~~~~eDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V~v~~G----tl 91 (185)
.-|+|.|+|--- +.......+++.++.+. .|+|+-=.+.++ +...+.+.-+ +.++| +++++. .+
T Consensus 35 ~GG~Ttv~~mpn~~p~~~~~~~~~~~~~~a~~~~~~d~~~~~~~~----~~~~~~el~~-l~~~Gv~g~K~f~~~~~~~~ 109 (337)
T cd01302 35 AGGVTTVIDMPNTGPPPIDLPAIELKIKLAEESSYVDFSFHAGIG----PGDVTDELKK-LFDAGINSLKVFMNYYFGEL 109 (337)
T ss_pred hCCCcEEEECCCCCCCCCcHHHHHHHHHHhCcCcEeeEEEEEecc----CccCHHHHHH-HHHcCCcEEEEEEeccCCCc
Confidence 459999998321 11125567777777764 488886333332 2223555433 35677 565541 11
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEe----------cCC---cccCChhHHHHHHHHHHHCCCeeccccccc
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIEL----------NVG---SLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEI----------SdG---ti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
+ .+.. ..+.+-++.++++|...+-= ... ..-++..+-.++|+.+++.|+.|..|+-..
T Consensus 110 ~--~~~~--~~l~~~~~~~~~~g~~v~~H~Er~~~la~~~g~~l~i~Hiss~~~le~i~~ak~~g~~vt~ev~ph 180 (337)
T cd01302 110 F--DVDD--GTLMRTFLEIASRGGPVMVHAERAAQLAEEAGANVHIAHVSSGEALELIKFAKNKGVKVTCEVCPH 180 (337)
T ss_pred c--ccCH--HHHHHHHHHHHhcCCeEEEeHHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHHHHCCCcEEEEcChh
Confidence 0 0111 13444444444444332100 001 123456777899999999999997776544
No 431
>PLN02803 beta-amylase
Probab=44.37 E-value=51 Score=32.36 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=45.4
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--Ccc------cCChhHHHHHHHHHHHCCCeecc
Q 029925 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--GSL------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~~yl~~~k~lGF~~IEISd--Gti------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+|+||-+--++.+- .++++.+...|+.+|.+|++.|+|.- |-+ .-+=.--.++.+++++.|||+.+
T Consensus 83 ~~~vpvyVMlPLd~V~~~~~~~~~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GLKlq~ 162 (548)
T PLN02803 83 DSGVPVFVMLPLDTVTMGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQKHGLKLQV 162 (548)
T ss_pred CCceeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEEeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 4457776553333321 23345788899999999999998853 222 33444567899999999999833
No 432
>PLN00197 beta-amylase; Provisional
Probab=43.92 E-value=52 Score=32.45 Aligned_cols=68 Identities=21% Similarity=0.192 Sum_probs=47.2
Q ss_pred hCCceecCccHHHHHH----HhCCchHHHHHHHHHHcCCCEEEecC--Ccc------cCChhHHHHHHHHHHHCCCeecc
Q 029925 81 QHDVYVSTGDWAEHLI----RNGPSAFKEYVEDCKQVGFDTIELNV--GSL------EIPEETLLRYVRLVKSAGLKAKP 148 (185)
Q Consensus 81 ~~gV~v~~GtlfE~al----~qg~~~~~~yl~~~k~lGF~~IEISd--Gti------~i~~~~r~~lI~~~~~~Gf~v~~ 148 (185)
..+|+||-+--++.+- .+++..+...|+.+|.+|++.|+|.- |-+ .-+=.--.+|.+++++.|||+.+
T Consensus 103 ~~~vpvyVMLPLd~V~~~~~l~~~~~l~~~L~~LK~~GVdGVmvDvWWGiVE~~~p~~YdWsgY~~L~~mvr~~GLKlq~ 182 (573)
T PLN00197 103 GKGVPVYVMMPLDSVTMGNTVNRRKAMKASLQALKSAGVEGIMMDVWWGLVERESPGVYNWGGYNELLEMAKRHGLKVQA 182 (573)
T ss_pred CCCeeEEEEeecceeccCCcccCHHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCcCCcHHHHHHHHHHHHcCCeEEE
Confidence 4467777653333321 22345799999999999999999853 333 33445567899999999999843
No 433
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=43.71 E-value=39 Score=29.33 Aligned_cols=41 Identities=27% Similarity=0.354 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHcC-CCEEEecCCccc---------CChhHHHHHHHHHHHC
Q 029925 102 AFKEYVEDCKQVG-FDTIELNVGSLE---------IPEETLLRYVRLVKSA 142 (185)
Q Consensus 102 ~~~~yl~~~k~lG-F~~IEISdGti~---------i~~~~r~~lI~~~~~~ 142 (185)
.+.+..+.+++.| ||+|||+-++-. -..+.-.++|+.+++.
T Consensus 105 ~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~ 155 (301)
T PRK07259 105 EYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEV 155 (301)
T ss_pred HHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHh
Confidence 3444455566667 788887443222 1234556666666665
No 434
>PLN02801 beta-amylase
Probab=43.69 E-value=52 Score=32.07 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=34.0
Q ss_pred CchHHHHHHHHHHcCCCEEEecC--Cccc------CChhHHHHHHHHHHHCCCee
Q 029925 100 PSAFKEYVEDCKQVGFDTIELNV--GSLE------IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 100 ~~~~~~yl~~~k~lGF~~IEISd--Gti~------i~~~~r~~lI~~~~~~Gf~v 146 (185)
+..+...|+.+|.+|++.|+|.- |-++ -+=.--.++.+++++.|||+
T Consensus 36 ~~~l~~~L~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mvr~~GLKl 90 (517)
T PLN02801 36 EEGLEKQLKRLKEAGVDGVMVDVWWGIVESKGPKQYDWSAYRSLFELVQSFGLKI 90 (517)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeeeeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 34688888888899998888753 3332 33445568888888888888
No 435
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=43.67 E-value=1.2e+02 Score=26.43 Aligned_cols=95 Identities=20% Similarity=0.193 Sum_probs=66.3
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC---ccHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GDWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---GtlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
-+.+-..+.-++++-++ .+.|.+.++.-++-+|++|+.++- |.| .+++-.++.+++|.+.
T Consensus 71 ~e~~ma~~aGAd~~tV~-------g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~----------~~~~~~~~l~~~gvd~ 133 (217)
T COG0269 71 IEARMAFEAGADWVTVL-------GAADDATIKKAIKVAKEYGKEVQIDLIGVW----------DPEQRAKWLKELGVDQ 133 (217)
T ss_pred HHHHHHHHcCCCEEEEE-------ecCCHHHHHHHHHHHHHcCCeEEEEeecCC----------CHHHHHHHHHHhCCCE
Confidence 34444555555555443 367788899999999999998875 333 3455556688899999
Q ss_pred EEecCCcc----cCCh-hHHHHHHHHHHHCCCeecccccc
Q 029925 118 IELNVGSL----EIPE-ETLLRYVRLVKSAGLKAKPKFAV 152 (185)
Q Consensus 118 IEISdGti----~i~~-~~r~~lI~~~~~~Gf~v~~E~G~ 152 (185)
+.+--|.- -.+. .+.++-|++..+.|++|..-=|+
T Consensus 134 ~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI 173 (217)
T COG0269 134 VILHRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGI 173 (217)
T ss_pred EEEEecccHhhcCCCccHHHHHHHHHhhccCceEEEecCC
Confidence 99987754 2333 46678899999999998443333
No 436
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=43.60 E-value=61 Score=25.50 Aligned_cols=59 Identities=14% Similarity=0.021 Sum_probs=41.9
Q ss_pred HHHHhCCceec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 77 KRAHQHDVYVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 77 ~l~~~~gV~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
-+++++|..|. .|. +- ..+++++.+.+.+.+.|=+|.-...--. .-.++++++++.|+.
T Consensus 25 ~~lr~~G~eVi~LG~-------~v--p~e~i~~~a~~~~~d~V~lS~~~~~~~~-~~~~~~~~L~~~~~~ 84 (137)
T PRK02261 25 RALTEAGFEVINLGV-------MT--SQEEFIDAAIETDADAILVSSLYGHGEI-DCRGLREKCIEAGLG 84 (137)
T ss_pred HHHHHCCCEEEECCC-------CC--CHHHHHHHHHHcCCCEEEEcCccccCHH-HHHHHHHHHHhcCCC
Confidence 46677888554 462 12 5778888899999999999976664333 345888999988773
No 437
>PRK12999 pyruvate carboxylase; Reviewed
Probab=43.57 E-value=71 Score=33.81 Aligned_cols=101 Identities=7% Similarity=0.050 Sum_probs=72.4
Q ss_pred chhHHHHHHHhh-cccccEEeeeCcccccCChhHHHHHHHHHHhCCc--eecCc-c-HHHHHHH--hCCchHHHHHHHHH
Q 029925 39 SHNVLEDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV--YVSTG-D-WAEHLIR--NGPSAFKEYVEDCK 111 (185)
Q Consensus 39 g~~~~eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV--~v~~G-t-lfE~al~--qg~~~~~~yl~~~k 111 (185)
.-+-.+++++.| ..-||++-+.-...-+ +.++.-|+.++++|- .++.+ | .+.-+.. ..++.+-++.+++.
T Consensus 625 p~~v~~~~i~~a~~~Gid~~rifd~lnd~---~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~ 701 (1146)
T PRK12999 625 PDNVVRAFVREAAAAGIDVFRIFDSLNWV---ENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELE 701 (1146)
T ss_pred CchHHHHHHHHHHHcCCCEEEEeccCChH---HHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHH
Confidence 334667766664 4559999998654443 459999999999993 23322 1 2222222 23335666777788
Q ss_pred HcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 112 QVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 112 ~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
++|.+.|=|.|-.--+.+.+-.++|+.++++
T Consensus 702 ~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~ 732 (1146)
T PRK12999 702 KAGAHILAIKDMAGLLKPAAAYELVSALKEE 732 (1146)
T ss_pred HcCCCEEEECCccCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999986
No 438
>cd01293 Bact_CD Bacterial cytosine deaminase and related metal-dependent hydrolases. Cytosine deaminases (CDs) catalyze the deamination of cytosine, producing uracil and ammonia. They play an important role in pyrimidine salvage. CDs are present in prokaryotes and fungi, but not mammalian cells. The bacterial enzymes, but not the fungal enzymes, are related to the adenosine deaminases (ADA). The bacterial enzymes are iron dependent and hexameric.
Probab=43.52 E-value=1.1e+02 Score=26.57 Aligned_cols=74 Identities=22% Similarity=0.263 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCE-EEecCCcccCChhHHHHHHHHHHHCCCe
Q 029925 70 PFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDT-IELNVGSLEIPEETLLRYVRLVKSAGLK 145 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~-IEISdGti~i~~~~r~~lI~~~~~~Gf~ 145 (185)
+..++.++.+++++..+..| .... .....++.+.+.++.++++|+.. +-++...-+ ......+.++.+.+.|+.
T Consensus 158 ~~~~~~v~~~~~~g~~~~~~~~~~~-~~~~s~e~l~~~~~~A~~~g~~v~~H~~e~~~~-~~~~~~~~~~~~~~~g~~ 233 (398)
T cd01293 158 PGGEELMREALKMGADVVGGIPPAE-IDEDGEESLDTLFELAQEHGLDIDLHLDETDDP-GSRTLEELAEEAERRGMQ 233 (398)
T ss_pred CCHHHHHHHHHHhCCCEEeCCCCCc-CCccHHHHHHHHHHHHHHhCCCCEEEeCCCCCc-chhHHHHHHHHHHHhCCC
Confidence 34677788888776533322 1111 01111236778888888888653 333332222 122233567777777764
No 439
>PRK12928 lipoyl synthase; Provisional
Probab=43.47 E-value=1.9e+02 Score=25.60 Aligned_cols=53 Identities=13% Similarity=0.206 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHHCC--CeeccccccccCCC--CCCCc--------ccc-ccccccccCCCCcc
Q 029925 127 IPEETLLRYVRLVKSAG--LKAKPKFAVMFNKS--DIPSD--------RDR-AFGAYVARAPRSTG 179 (185)
Q Consensus 127 i~~~~r~~lI~~~~~~G--f~v~~E~G~k~~~~--di~~g--------~d~-~~~~~~~~~~~~~~ 179 (185)
.+.++++++++.+++.| +.+++-+=+-+++. ++... -|. ..|.|+.|+++.-.
T Consensus 185 ~t~e~~le~l~~ak~~gp~i~~~s~iIvG~GET~ed~~etl~~Lrel~~d~v~i~~Yl~p~~~~~~ 250 (290)
T PRK12928 185 ADYQRSLDLLARAKELAPDIPTKSGLMLGLGETEDEVIETLRDLRAVGCDRLTIGQYLRPSLAHLP 250 (290)
T ss_pred CCHHHHHHHHHHHHHhCCCceecccEEEeCCCCHHHHHHHHHHHHhcCCCEEEEEcCCCCCccCCc
Confidence 57889999999999998 77766332223221 11111 111 13889999987643
No 440
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=43.26 E-value=3e+02 Score=26.27 Aligned_cols=83 Identities=16% Similarity=0.157 Sum_probs=64.7
Q ss_pred ccEEeeeCcccccCChhHHHHHHHHHHh-CCceecCcc----HHHHHHHhCC-----------chHHHHHHHHHHcCCCE
Q 029925 54 VDGLKFSGGSHSLMPKPFIEEVVKRAHQ-HDVYVSTGD----WAEHLIRNGP-----------SAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 54 ID~lKfg~GTs~l~p~~~L~eKI~l~~~-~gV~v~~Gt----lfE~al~qg~-----------~~~~~yl~~~k~lGF~~ 117 (185)
.|+|=++.-+- ..+.+.+.|+..++ .+++++-.| -+|.++..+. +++++..+.|++.|...
T Consensus 128 AD~IaL~~~s~---dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAleagad~~plI~Sat~dN~~~m~~la~~yg~pv 204 (450)
T PRK04165 128 LDMVALRNASG---DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALEVVADRKPLLYAATKENYEEMAELAKEYNCPL 204 (450)
T ss_pred CCEEEEeCCCC---CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHHhcCCCCceEEecCcchHHHHHHHHHHcCCcE
Confidence 67777776544 45568899998887 699888743 7888886642 46788889999999999
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
|=.++. .+...++++++.+.|+
T Consensus 205 Vv~~~d-----l~~L~~lv~~~~~~GI 226 (450)
T PRK04165 205 VVKAPN-----LEELKELVEKLQAAGI 226 (450)
T ss_pred EEEchh-----HHHHHHHHHHHHHcCC
Confidence 887764 5677789999999988
No 441
>PF14098 SSPI: Small, acid-soluble spore protein I
Probab=43.23 E-value=62 Score=23.17 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHhCCc-eecCc-c-HHHHHHHhC
Q 029925 68 PKPFIEEVVKRAHQHDV-YVSTG-D-WAEHLIRNG 99 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV-~v~~G-t-lfE~al~qg 99 (185)
+++.|++.|+=+-+.|= ..-|| | +||.+|..-
T Consensus 15 s~~el~~~I~daI~sgEE~~LPGLGVlFE~~W~~~ 49 (65)
T PF14098_consen 15 SKEELKDTIEDAIQSGEEKALPGLGVLFEVIWKNS 49 (65)
T ss_pred CHHHHHHHHHHHHhccchhcCCchHHHHHHHHHhC
Confidence 35668888888888665 66788 7 999999874
No 442
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=43.11 E-value=2.6e+02 Score=29.99 Aligned_cols=97 Identities=12% Similarity=0.115 Sum_probs=69.8
Q ss_pred HHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC----CceecCcc----HHHHHHHh--------------CCchHH
Q 029925 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----DVYVSTGD----WAEHLIRN--------------GPSAFK 104 (185)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----gV~v~~Gt----lfE~al~q--------------g~~~~~ 104 (185)
++.-+++|| +|.+...+..++.+++-+.+..+. +|+++.-| -+|.++.. +..+++
T Consensus 378 ve~GA~iID---Vn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk~~~G~~IINsIs~~~g~~~~~ 454 (1178)
T TIGR02082 378 VENGAQILD---INVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLKCIQGKCIVNSISLKDGEERFI 454 (1178)
T ss_pred HHCCCCEEE---ECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHHhcCCCCEEEeCCCCCCCccHH
Confidence 344456666 588887788889999999999864 88998863 68899875 234788
Q ss_pred HHHHHHHHcCCCEEEecC--CcccCChhHHHH----HHHHHHH-CCCee
Q 029925 105 EYVEDCKQVGFDTIELNV--GSLEIPEETLLR----YVRLVKS-AGLKA 146 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISd--Gti~i~~~~r~~----lI~~~~~-~Gf~v 146 (185)
+.+..|+++|...|=.-- .=+..+.++|.+ +++.+.+ .|+..
T Consensus 455 ~~~~l~~~yga~vV~m~~de~G~p~t~e~r~~i~~~~~~~~~~~~Gi~~ 503 (1178)
T TIGR02082 455 ETAKLIKEYGAAVVVMAFDEEGQARTADRKIEICKRAYNILTEKVGFPP 503 (1178)
T ss_pred HHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCH
Confidence 899999999999987642 225555666654 4555665 67753
No 443
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=43.09 E-value=40 Score=27.98 Aligned_cols=85 Identities=14% Similarity=0.225 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHhC-CceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 69 KPFIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 69 ~~~L~eKI~l~~~~-gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
.+.+++-++.|++- +-.+.- -...|.-..-.-.+++|-++.||++|+.-|=|- =.+-|..|.| .+-+.++++||.|
T Consensus 7 ~~~~e~~~~~Y~~~~~~~~~~~aa~vE~~~Y~~~tRveEiieFak~mgykkiGiA-fCiGL~~EA~-~~~~iL~~~gFev 84 (157)
T PF08901_consen 7 QEIIEEALELYKEDENRKIARAAAEVEGEGYGKLTRVEEIIEFAKRMGYKKIGIA-FCIGLRKEAR-ILAKILEANGFEV 84 (157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHcCCCeeeeh-hhHhHHHHHH-HHHHHHHHCCCEE
Confidence 45677777777773 333333 256665443323589999999999999999874 3566777766 6667777999999
Q ss_pred -----------ccccccccC
Q 029925 147 -----------KPKFAVMFN 155 (185)
Q Consensus 147 -----------~~E~G~k~~ 155 (185)
+.++|+...
T Consensus 85 ~sV~CKvg~i~K~~igi~~~ 104 (157)
T PF08901_consen 85 YSVCCKVGGIDKEEIGIPEE 104 (157)
T ss_pred EEEEecCCCccHHHcCCchh
Confidence 666666544
No 444
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.06 E-value=1.9e+02 Score=23.82 Aligned_cols=45 Identities=22% Similarity=0.264 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCEEEecCCcccCCh-hHHHHHHHHHHHCC-Ceeccc
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPE-ETLLRYVRLVKSAG-LKAKPK 149 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~-~~r~~lI~~~~~~G-f~v~~E 149 (185)
+.++.|.+.|-+.|.+.......|. ++-.++++.+++.| +.+.++
T Consensus 83 ~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g~~~iiv~ 129 (219)
T cd04729 83 EEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEYNCLLMAD 129 (219)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHhCCeEEEE
Confidence 3678899999999888655444454 35668899999988 666553
No 445
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=43.00 E-value=62 Score=26.63 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=53.0
Q ss_pred eeeCcccccCChhHHHHHHHHHHhCCc-e-ecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHH
Q 029925 58 KFSGGSHSLMPKPFIEEVVKRAHQHDV-Y-VSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRY 135 (185)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV-~-v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~l 135 (185)
|--+ ++++..+ |.+ +++++|| . +..|..-+.|+.+- ...+-++||+.+=++|++-+.+.+.....
T Consensus 122 K~~~--saF~~T~-L~~---~Lr~~gi~~lii~Gv~T~~CV~~T-------a~~A~~~Gy~v~vv~Da~as~~~~~h~~a 188 (203)
T cd01013 122 KWRY--SAFKRSP-LLE---RLKESGRDQLIITGVYAHIGCLST-------AVDAFMRDIQPFVVADAIADFSLEEHRMA 188 (203)
T ss_pred CCCc--CCcCCCC-HHH---HHHHcCCCEEEEEEeccChhHHHH-------HHHHHHCCCeEEEeccccCCCCHHHHHHH
Confidence 5443 3444432 444 4688888 3 33487888888774 25578899999999999999998888788
Q ss_pred HHHHHHCC
Q 029925 136 VRLVKSAG 143 (185)
Q Consensus 136 I~~~~~~G 143 (185)
++.+...+
T Consensus 189 l~~l~~~~ 196 (203)
T cd01013 189 LKYAATRC 196 (203)
T ss_pred HHHHHhhe
Confidence 88776654
No 446
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=43.00 E-value=24 Score=37.21 Aligned_cols=40 Identities=3% Similarity=0.096 Sum_probs=34.8
Q ss_pred HHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC
Q 029925 103 FKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~ 142 (185)
+-+..+.+.+.|.+.|=|.|-.--+.+..-.++|+.++++
T Consensus 691 ~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~ 730 (1143)
T TIGR01235 691 YTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREK 730 (1143)
T ss_pred HHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence 3355666688999999999999999999999999999986
No 447
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=42.92 E-value=1.6e+02 Score=23.44 Aligned_cols=119 Identities=14% Similarity=0.172 Sum_probs=69.2
Q ss_pred HHHHHHHhhcccccEEeeeCcccccC-ChhHHHHHHHHHHhCCceecC---c-cHHHHHHHhCCchHHHHHHHHHHcCCC
Q 029925 42 VLEDIFESMGQFVDGLKFSGGSHSLM-PKPFIEEVVKRAHQHDVYVST---G-DWAEHLIRNGPSAFKEYVEDCKQVGFD 116 (185)
Q Consensus 42 ~~eDlLe~ag~yID~lKfg~GTs~l~-p~~~L~eKI~l~~~~gV~v~~---G-tlfE~al~qg~~~~~~yl~~~k~lGF~ 116 (185)
.+.++|+..+-.-+-+-|-.--.... ..+.+.+.++.++++|+.+.. | ++.. ++.+..+.++
T Consensus 104 ~l~~~l~~~~~~~~~lvlei~e~~~~~~~~~~~~~i~~l~~~G~~ialddfg~~~~~-------------~~~l~~l~~d 170 (241)
T smart00052 104 RVLELLEETGLPPQRLELEITESVLLDDDESAVATLQRLRELGVRIALDDFGTGYSS-------------LSYLKRLPVD 170 (241)
T ss_pred HHHHHHHHcCCCHHHEEEEEeChhhhcChHHHHHHHHHHHHCCCEEEEeCCCCcHHH-------------HHHHHhCCCC
Confidence 34555555554444555554443332 333455888889999988875 2 2322 3345667899
Q ss_pred EEEecCCcccCC------hhHHHHHHHHHHHCCCeeccccccccCC---CCCCCccccccccccccC
Q 029925 117 TIELNVGSLEIP------EETLLRYVRLVKSAGLKAKPKFAVMFNK---SDIPSDRDRAFGAYVARA 174 (185)
Q Consensus 117 ~IEISdGti~i~------~~~r~~lI~~~~~~Gf~v~~E~G~k~~~---~di~~g~d~~~~~~~~~~ 174 (185)
.|-|+-..+.-- ......+++.+++.|.+|..| |+.... .--..|-+-.=|-|+.+.
T Consensus 171 ~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~via~-gVe~~~~~~~l~~~Gi~~~QG~~~~~p 236 (241)
T smart00052 171 LLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVVAE-GVETPEQLDLLRSLGCDYGQGYLFSRP 236 (241)
T ss_pred eEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEEEe-cCCCHHHHHHHHHcCCCEEeeceeccC
Confidence 999987765321 123456677888889888765 554433 123344554446666543
No 448
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=42.89 E-value=72 Score=28.67 Aligned_cols=56 Identities=20% Similarity=0.217 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhC-CceecCc---cHHHHHHHhCC--chHHHHHHHHHHcC-CCEEEecCCccc
Q 029925 70 PFIEEVVKRAHQH-DVYVSTG---DWAEHLIRNGP--SAFKEYVEDCKQVG-FDTIELNVGSLE 126 (185)
Q Consensus 70 ~~L~eKI~l~~~~-gV~v~~G---tlfE~al~qg~--~~~~~yl~~~k~lG-F~~IEISdGti~ 126 (185)
..+.+.++-.++. |..+..| ++.|.. ..|. +..-++.+.+.+.| +|.|+||.|+..
T Consensus 192 r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~-~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~ 254 (343)
T cd04734 192 RFLLEVLAAVRAAVGPDFIVGIRISGDEDT-EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYY 254 (343)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEeehhhcc-CCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCC
Confidence 6777888877775 4333223 233321 1111 12335556666778 999999998764
No 449
>PRK09234 fbiC FO synthase; Reviewed
Probab=42.75 E-value=86 Score=32.17 Aligned_cols=113 Identities=16% Similarity=0.148 Sum_probs=68.1
Q ss_pred CCceeEec-CCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChh----------HHHHHHHHHHhCCceecCccHH
Q 029925 24 FGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKP----------FIEEVVKRAHQHDVYVSTGDWA 92 (185)
Q Consensus 24 ~GlTmV~D-kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~----------~L~eKI~l~~~~gV~v~~Gtlf 92 (185)
.|.|.|.= -|....-....+.++++..-...--+++= +..|-+ .+++.+..++++|+.-+|||..
T Consensus 572 ~G~tev~i~gG~~p~~~~~~y~~lir~IK~~~p~i~i~----afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGLds~pgt~a 647 (843)
T PRK09234 572 AGATEVCMQGGIHPELPGTGYADLVRAVKARVPSMHVH----AFSPMEIVNGAARLGLSIREWLTALREAGLDTIPGTAA 647 (843)
T ss_pred CCCCEEEEecCCCCCcCHHHHHHHHHHHHHhCCCeeEE----ecChHHHHHHHHHcCCCHHHHHHHHHHhCcCccCCCch
Confidence 46665532 23322114556677777665443333331 111211 2578999999999999999888
Q ss_pred HHHHH-------hCCchHH---HHHHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHHHCC
Q 029925 93 EHLIR-------NGPSAFK---EYVEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 93 E~al~-------qg~~~~~---~yl~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~~~G 143 (185)
|+.-. -+.-..+ +-++.++++|+. ++.|.+ --+.++|.+.+..+++..
T Consensus 648 eil~d~vr~~i~p~k~~~~~wle~i~~Ah~lGi~---~~stmm~G~~Et~edrv~hl~~LreLq 708 (843)
T PRK09234 648 EILDDEVRWVLTKGKLPTAEWIEVVTTAHEVGLR---SSSTMMYGHVDTPRHWVAHLRVLRDIQ 708 (843)
T ss_pred hhCCHHHHhhcCCCCCCHHHHHHHHHHHHHcCCC---cccceEEcCCCCHHHHHHHHHHHHhcC
Confidence 87753 0101233 456677888876 455433 357888989888888875
No 450
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.60 E-value=72 Score=27.28 Aligned_cols=89 Identities=11% Similarity=0.141 Sum_probs=59.5
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc----------eecCccHHHHHHHhCCchHHHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV----------YVSTGDWAEHLIRNGPSAFKEYVE 108 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV----------~v~~GtlfE~al~qg~~~~~~yl~ 108 (185)
.+...+.+|+.-.+. +-.||.++.+.+.+++-.+.+-.-.| +|++-+|-| ..- ...++++
T Consensus 84 s~e~~~~~l~~Ga~k-----vvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~---~~~--~~~e~~~ 153 (232)
T PRK13586 84 DIEKAKRLLSLDVNA-----LVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKE---KSM--EVIDGIK 153 (232)
T ss_pred CHHHHHHHHHCCCCE-----EEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCee---CCC--CHHHHHH
Confidence 444555577765554 46799999999999888777721111 445545755 333 7889999
Q ss_pred HHHHcCCCEEEe----cCCcccCChhHHHHHHH
Q 029925 109 DCKQVGFDTIEL----NVGSLEIPEETLLRYVR 137 (185)
Q Consensus 109 ~~k~lGF~~IEI----SdGti~i~~~~r~~lI~ 137 (185)
.+.++|+..|=+ .||+..=++-+..+.++
T Consensus 154 ~l~~~g~~~ii~tdI~~dGt~~G~d~el~~~~~ 186 (232)
T PRK13586 154 KVNELELLGIIFTYISNEGTTKGIDYNVKDYAR 186 (232)
T ss_pred HHHhcCCCEEEEecccccccCcCcCHHHHHHHH
Confidence 999999987766 36777666655544443
No 451
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=42.57 E-value=61 Score=27.93 Aligned_cols=46 Identities=30% Similarity=0.382 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcc---------cCChhHHHHHHHHHHHC-CCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSL---------EIPEETLLRYVRLVKSA-GLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti---------~i~~~~r~~lI~~~~~~-Gf~v~ 147 (185)
.+.+..+.+++.|||+|||+=++- --+.+.-.++++.+++. ++.|.
T Consensus 103 ~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~ 158 (296)
T cd04740 103 EFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVI 158 (296)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEE
Confidence 444555566777899999865432 22334455777777776 55443
No 452
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=42.47 E-value=72 Score=28.21 Aligned_cols=70 Identities=20% Similarity=0.118 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHH-HCCCeeccccccccCCCCCCCccccccccccccCCCCcc
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVK-SAGLKAKPKFAVMFNKSDIPSDRDRAFGAYVARAPRSTG 179 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~-~~Gf~v~~E~G~k~~~~di~~g~d~~~~~~~~~~~~~~~ 179 (185)
..++=++.|.+.|=|+|.|. ||..+..+...++|++++ +.++.+.-|.|--..-+ -++ -||..||--||.
T Consensus 29 ~~~ei~~~~~~~GTDaImIG-GS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is---~~a----Davff~svLNS~ 99 (240)
T COG1646 29 EADEIAEAAAEAGTDAIMIG-GSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGIS---PYA----DAVFFPSVLNSD 99 (240)
T ss_pred ccHHHHHHHHHcCCCEEEEC-CcccccHHHHHHHHHHHHhhcCCCEEEecCChhccC---ccC----CeEEEEEEecCC
Confidence 46677888999999999996 899999999999999999 77888877666443322 233 366666655543
No 453
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=42.44 E-value=55 Score=29.47 Aligned_cols=54 Identities=22% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHHHHHcCCCEEEec---------CCcc----------cCChhHHHHHHHHHHHCCCeeccccccccCCCC
Q 029925 105 EYVEDCKQVGFDTIELN---------VGSL----------EIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSD 158 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEIS---------dGti----------~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~d 158 (185)
+=|++.++|||++|=|| .|.- .=+.++..++|+.+.++|++|...+-....+.+
T Consensus 33 ~~LdYl~~LGv~aiwl~Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D~V~NH~s~~ 105 (505)
T COG0366 33 EKLDYLKELGVDAIWLSPIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILDLVFNHTSDE 105 (505)
T ss_pred HhhhHHHHhCCCEEEeCCCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEEeccCcCCCc
Confidence 45667778888888332 2221 234688999999999999999766665555543
No 454
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=42.43 E-value=1.2e+02 Score=24.78 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=48.5
Q ss_pred ChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHC---
Q 029925 68 PKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSA--- 142 (185)
Q Consensus 68 p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~--- 142 (185)
+.+.+++-++.++.+|+.+... ||-| ++.+.++|++.|=++.-.......+ .++++++++.
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~v~v~~~~e-------------~~~~~~~g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~ 171 (217)
T cd00331 106 DDEQLKELYELARELGMEVLVEVHDEEE-------------LERALALGAKIIGINNRDLKTFEVD-LNTTERLAPLIPK 171 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEECCHHH-------------HHHHHHcCCCEEEEeCCCccccCcC-HHHHHHHHHhCCC
Confidence 3356777777788888865432 5655 3446667888886663222222222 2555665543
Q ss_pred CCeeccccccccCC---CCCCCccc
Q 029925 143 GLKAKPKFAVMFNK---SDIPSDRD 164 (185)
Q Consensus 143 Gf~v~~E~G~k~~~---~di~~g~d 164 (185)
+..+..+-|+...+ .-..+|+|
T Consensus 172 ~~pvia~gGI~s~edi~~~~~~Ga~ 196 (217)
T cd00331 172 DVILVSESGISTPEDVKRLAEAGAD 196 (217)
T ss_pred CCEEEEEcCCCCHHHHHHHHHcCCC
Confidence 57888899986433 33455554
No 455
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=42.41 E-value=1.5e+02 Score=24.56 Aligned_cols=116 Identities=18% Similarity=0.115 Sum_probs=65.0
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceec----Cc-----------
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVS----TG----------- 89 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~----~G----------- 89 (185)
++..+.+-|. . .+..++.+++. | +|.+ -.||..+-+.+.+++-++.+.+..|.++ .|
T Consensus 74 ~~pv~~~ggi--~-~~~d~~~~~~~-G--~~~v--ilg~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~ 145 (232)
T TIGR03572 74 FMPLTVGGGI--R-SLEDAKKLLSL-G--ADKV--SINTAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSD 145 (232)
T ss_pred CCCEEEECCC--C-CHHHHHHHHHc-C--CCEE--EEChhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEEC
Confidence 4445555444 2 33444444443 2 4443 4568888888888888877644434322 22
Q ss_pred cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc--CChhHHHHHHHHHHHC-CCeeccccccc
Q 029925 90 DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE--IPEETLLRYVRLVKSA-GLKAKPKFAVM 153 (185)
Q Consensus 90 tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~--i~~~~r~~lI~~~~~~-Gf~v~~E~G~k 153 (185)
+|.+. ......++.+.+.+.|++.|.+++=+-+ .+. -..++++++++. ...|..-=|+.
T Consensus 146 ~~~~~----~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g-~~~~~~~~i~~~~~ipvia~GGi~ 207 (232)
T TIGR03572 146 NGRRA----TGRDPVEWAREAEQLGAGEILLNSIDRDGTMKG-YDLELIKTVSDAVSIPVIALGGAG 207 (232)
T ss_pred CCccc----CCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCC-CCHHHHHHHHhhCCCCEEEECCCC
Confidence 22221 1124568889999999999999982221 111 125777777765 45555544444
No 456
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=42.40 E-value=2e+02 Score=23.98 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=60.5
Q ss_pred hHHHHHHHhhc-ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCE
Q 029925 41 NVLEDIFESMG-QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDT 117 (185)
Q Consensus 41 ~~~eDlLe~ag-~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~ 117 (185)
..++..|+..+ +|||++-+-|=.........+-+-++-+++.|.-=+.| ++= ++.+++.++.+ ...|++
T Consensus 97 ~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~-------~~~l~~~~~~~-~~~~~~ 168 (285)
T cd06660 97 RAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFS-------AEQLEEALAAA-GVPPAV 168 (285)
T ss_pred HHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCC-------HHHHHHHHHhh-CCCceE
Confidence 56677777775 99999999995544432334666677777777544444 222 11333333333 356777
Q ss_pred EEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 118 IELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 118 IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+.+-=.-..-..+. .+++.++++|..|
T Consensus 169 ~q~~~n~~~~~~~~--~~~~~~~~~gi~v 195 (285)
T cd06660 169 NQVEYNLLDRQAEE--ELLPYCREHGIGV 195 (285)
T ss_pred EecccCcccCchHH--HHHHHHHHcCcEE
Confidence 77766655555443 7899999998877
No 457
>cd01316 CAD_DHOase The eukaryotic CAD protein is a trifunctional enzyme of carbamoylphosphate synthetase-aspartate transcarbamoylase-dihydroorotase, which catalyzes the first three steps of de novo pyrimidine nucleotide biosynthesis. Dihydroorotase (DHOase) catalyzes the third step, the reversible interconversion of carbamoyl aspartate to dihydroorotate.
Probab=42.35 E-value=74 Score=28.66 Aligned_cols=122 Identities=11% Similarity=0.043 Sum_probs=67.4
Q ss_pred CceeEecCCC--CCCcchhHHHHHHHhhc--ccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHH----H-
Q 029925 25 GVTEMRSPHY--TLSSSHNVLEDIFESMG--QFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAE----H- 94 (185)
Q Consensus 25 GlTmV~DkG~--s~~~g~~~~eDlLe~ag--~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE----~- 94 (185)
|+|.|+|--- +.......++..++.+. .|||+.=.++.+.- +.+.+.+... ...|+.+|.. .+-+ .
T Consensus 37 GvTtv~dmPnt~P~~~~~~~~~~~~~~a~~~s~vd~~~~~~~~~~--~~~~~~~l~~--~~~g~k~f~~~~~~~~~~~~~ 112 (344)
T cd01316 37 GFTMVRAMPNTNPSIVDVASLKLVQSLAQAKARCDYAFSIGATST--NAATVGELAS--EAVGLKFYLNETFSTLILDKI 112 (344)
T ss_pred CCeEEEECCCCCCCCCCHHHHHHHHHHhccCcEEeEEEEeeecCC--CHHHHHHHHh--ccCeEEEEECCCCCCCccchH
Confidence 9999999432 11225677788888876 48998744443321 2222444222 1367777752 1101 0
Q ss_pred -----HH---HhC------Cc--hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeeccccccccC
Q 029925 95 -----LI---RNG------PS--AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFN 155 (185)
Q Consensus 95 -----al---~qg------~~--~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~ 155 (185)
.+ ..+ .. .+...+..++..|.... ..-++..+=.++|+++++.|+.|..|+-...-
T Consensus 113 ~~~~~~~~~~~~~~p~~~~~e~~~~~~~l~la~~~g~~lh-----i~HiSt~~~~~~i~~ak~~g~~vt~ev~phhL 184 (344)
T cd01316 113 TAWASHFNAWPSTKPIVTHAKSQTLAAVLLLASLHNRSIH-----ICHVSSKEEINLIRLAKARGLKVTCEVSPHHL 184 (344)
T ss_pred HHHHHHHHhcccCCCeEEehhhHHHHHHHHHHHHHCCCEE-----EEeCCCHHHHHHHHHHHHCCCcEEEEechHHe
Confidence 00 000 00 11133444444444321 22477788889999999999999888865543
No 458
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=42.31 E-value=1.9e+02 Score=24.18 Aligned_cols=99 Identities=21% Similarity=0.262 Sum_probs=0.0
Q ss_pred CCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC--ccHHHHHHHhCCchHHHHHHH
Q 029925 32 PHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST--GDWAEHLIRNGPSAFKEYVED 109 (185)
Q Consensus 32 kG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~--GtlfE~al~qg~~~~~~yl~~ 109 (185)
+|+ ....++++.+.. ..++|. .++.++..++.|.++.. ||+-+.+=.=
T Consensus 61 ~g~----~~~~v~~~~~~~-------------~~l~~g--a~elv~~lk~~G~~v~iiSgg~~~lv~~i----------- 110 (212)
T COG0560 61 KGL----PVEVLEEVREEF-------------LRLTPG--AEELVAALKAAGAKVVIISGGFTFLVEPI----------- 110 (212)
T ss_pred CCC----CHHHHHHHHHhc-------------CcCCcc--HHHHHHHHHHCCCEEEEEcCChHHHHHHH-----------
Q ss_pred HHHcCCCE-----EEecCC--------cccCChhHHHHHHHHHHHCCCeeccccccccCCCCCC
Q 029925 110 CKQVGFDT-----IELNVG--------SLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIP 160 (185)
Q Consensus 110 ~k~lGF~~-----IEISdG--------ti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~di~ 160 (185)
++.+|++. .|+.|| .+--.+.--.++-+.+++.|....--+.+-++..|++
T Consensus 111 a~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~nDlp 174 (212)
T COG0560 111 AERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPLEETVAYGDSANDLP 174 (212)
T ss_pred HHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHHHHHHcCCCHHHeEEEcCchhhHH
No 459
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=42.25 E-value=1e+02 Score=28.44 Aligned_cols=71 Identities=13% Similarity=0.150 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCCh----hHHHHHHHHHHHCCCe
Q 029925 70 PFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPE----ETLLRYVRLVKSAGLK 145 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~----~~r~~lI~~~~~~Gf~ 145 (185)
+.+.+.|+-.++++|.+..+. ++....++.+.+.+.|.+.|.|+-.+.+-.+ .++..+++..++.+..
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~--------~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSL--------SPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEec--------CCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCC
Confidence 344555555666666554332 2346788899999999999999766554222 1456677777777766
Q ss_pred ecc
Q 029925 146 AKP 148 (185)
Q Consensus 146 v~~ 148 (185)
|..
T Consensus 190 VIa 192 (368)
T PRK08649 190 VIV 192 (368)
T ss_pred EEE
Confidence 643
No 460
>PRK14017 galactonate dehydratase; Provisional
Probab=42.01 E-value=24 Score=31.95 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=39.5
Q ss_pred CceeEecCCCCCCcchhHHHHHHHhhcccccEE-----eeeCcccccCChhHHHHHHHHHHhCCceecCccHHH
Q 029925 25 GVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGL-----KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAE 93 (185)
Q Consensus 25 GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~l-----Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE 93 (185)
++-...|=- +. +++.++++++.-+ +|++ |+|+ +++ .++-.++|+.+||.+++|.++|
T Consensus 228 ~~pIa~dEs--~~-~~~~~~~li~~~a--~d~v~~d~~~~GG----it~---~~~ia~~A~~~gi~~~~h~~~~ 289 (382)
T PRK14017 228 SIPIATGER--LF-SRWDFKRVLEAGG--VDIIQPDLSHAGG----ITE---CRKIAAMAEAYDVALAPHCPLG 289 (382)
T ss_pred CCCEEeCCc--cC-CHHHHHHHHHcCC--CCeEecCccccCC----HHH---HHHHHHHHHHcCCeEeecCCCC
Confidence 444444443 35 7788888888643 5555 6665 333 6788999999999999987655
No 461
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=41.73 E-value=66 Score=27.69 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHcCCCEEEecCC---cccCChhHHHHHHHHHHH
Q 029925 102 AFKEYVEDCKQVGFDTIELNVG---SLEIPEETLLRYVRLVKS 141 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdG---ti~i~~~~r~~lI~~~~~ 141 (185)
.++++++++-+-|++.|=+.-. +..|+.++|.++++.+.+
T Consensus 23 ~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~ 65 (289)
T PF00701_consen 23 ALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVE 65 (289)
T ss_dssp HHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHH
Confidence 3455555555555555555332 235555555555555544
No 462
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=41.71 E-value=79 Score=25.88 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=48.0
Q ss_pred HHHHHhCCc-eec-CccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccC--ChhHHHHHHHHHHHCCCeec
Q 029925 76 VKRAHQHDV-YVS-TGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEI--PEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 76 I~l~~~~gV-~v~-~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i--~~~~r~~lI~~~~~~Gf~v~ 147 (185)
-.+++++|| .+. .|--.+.|+.+- . ..+.++||+.+=++|++-.. +++.....++.+...|-+|.
T Consensus 134 ~~~L~~~gi~~lii~G~~T~~CV~~T--a-----~dA~~~gy~v~v~~Da~a~~~~~~~~~~~al~~~~~~~~~v~ 202 (212)
T PRK11609 134 DDWLREHGITELIVMGLATDYCVKFT--V-----LDALALGYQVNVITDGCRGVNLQPQDSAHAFMEMSAAGATLY 202 (212)
T ss_pred HHHHHHcCCCEEEEEEeccCHHHHHH--H-----HHHHHCCCEEEEEeeccCCCCCCchhHHHHHHHHHHCCCEEE
Confidence 356678999 344 477888888875 3 34778999999999999886 46665667777777776654
No 463
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=41.64 E-value=2e+02 Score=26.39 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=51.3
Q ss_pred ccccCChhHHHHHHHHHHhCC---ceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHH
Q 029925 63 SHSLMPKPFIEEVVKRAHQHD---VYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLV 139 (185)
Q Consensus 63 Ts~l~p~~~L~eKI~l~~~~g---V~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~ 139 (185)
|.+++-+..+++--+.++++| +-+.+|..+. ..| -+++..+.+++.|++++..++-.-+-+.+.=.+.++.+
T Consensus 28 ~~i~fG~g~~~~l~~~~~~~g~~~~lvv~~~~~~---~~g--~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~ 102 (395)
T PRK15454 28 PVTLCGPGAVSSCGQQAQTRGLKHLFVMADSFLH---QAG--MTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL 102 (395)
T ss_pred CeEEECcCHHHHHHHHHHhcCCCEEEEEcCcchh---hCc--cHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHH
Confidence 333444444666666777766 3444454332 235 67777777888888877775554455666677888888
Q ss_pred HHCCCeeccc
Q 029925 140 KSAGLKAKPK 149 (185)
Q Consensus 140 ~~~Gf~v~~E 149 (185)
++.+..++.=
T Consensus 103 r~~~~D~Iia 112 (395)
T PRK15454 103 RESGCDGVIA 112 (395)
T ss_pred HhcCcCEEEE
Confidence 8887776443
No 464
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=41.61 E-value=98 Score=26.47 Aligned_cols=49 Identities=27% Similarity=0.369 Sum_probs=29.5
Q ss_pred HHhCCceecC--ccH------HHHHHHhC---CchHHHHHHHHHHcCCCEEEecCCcccC
Q 029925 79 AHQHDVYVST--GDW------AEHLIRNG---PSAFKEYVEDCKQVGFDTIELNVGSLEI 127 (185)
Q Consensus 79 ~~~~gV~v~~--Gtl------fE~al~qg---~~~~~~yl~~~k~lGF~~IEISdGti~i 127 (185)
.+..|++|.+ |+| |..++... ..-++.-++.+++.|||.|+|+=-....
T Consensus 69 ~~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~ 128 (343)
T PF00704_consen 69 AKNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS 128 (343)
T ss_dssp HHHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS
T ss_pred hhccCceEEEEeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccc
Confidence 5556898765 554 44444211 0137777888999999999996544444
No 465
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=41.52 E-value=1.1e+02 Score=26.01 Aligned_cols=122 Identities=11% Similarity=0.044 Sum_probs=71.6
Q ss_pred CCCCCCceeEecCCCCCCc------chhHHHHHHHhhcccccE-EeeeCcc-cccCChhHHHHHHHHHHhCCceecC---
Q 029925 20 KPRRFGVTEMRSPHYTLSS------SHNVLEDIFESMGQFVDG-LKFSGGS-HSLMPKPFIEEVVKRAHQHDVYVST--- 88 (185)
Q Consensus 20 KPR~~GlTmV~DkG~s~~~------g~~~~eDlLe~ag~yID~-lKfg~GT-s~l~p~~~L~eKI~l~~~~gV~v~~--- 88 (185)
.++..++.++++-+.+... -...+++.++.-.+-||+ .|+|.-+ .-.+ +.+++-.+++|++|+++.-
T Consensus 67 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~--~~~~~i~~~~~~~g~~liv~~~ 144 (258)
T TIGR01949 67 YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQI--RDLGMIAEICDDWGVPLLAMMY 144 (258)
T ss_pred cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHH--HHHHHHHHHHHHcCCCEEEEEe
Confidence 4567789899976654420 124578888887777777 5655311 1222 2478888899999986543
Q ss_pred --ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHH-CCCeeccccccc
Q 029925 89 --GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKS-AGLKAKPKFAVM 153 (185)
Q Consensus 89 --GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~-~Gf~v~~E~G~k 153 (185)
|--+.. ...+.+.+..+.+.++|-|+|-+|-. .+ .+.++++.+ ....|+.-=|++
T Consensus 145 ~~Gvh~~~---~~~~~~~~~~~~a~~~GADyikt~~~---~~----~~~l~~~~~~~~iPVva~GGi~ 202 (258)
T TIGR01949 145 PRGPHIDD---RDPELVAHAARLGAELGADIVKTPYT---GD----IDSFRDVVKGCPAPVVVAGGPK 202 (258)
T ss_pred ccCccccc---ccHHHHHHHHHHHHHHCCCEEeccCC---CC----HHHHHHHHHhCCCcEEEecCCC
Confidence 100100 11123444457788999999999822 22 345555554 345555544565
No 466
>PF13378 MR_MLE_C: Enolase C-terminal domain-like; PDB: 3FCP_B 3P0W_D 3VFC_A 3VDG_A 3FJ4_B 3CT2_B 3DGB_A 3V3W_A 3V4B_A 3NO1_E ....
Probab=41.43 E-value=28 Score=25.44 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=34.1
Q ss_pred chhHHHHHHHhhcccccEEeeeCccc-ccCChhHHHHHHHHHHhCCceecCccHHHHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSH-SLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIR 97 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs-~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~ 97 (185)
++..++++++. .-+|++.+--.-+ =+. ..++.+++|+.+||.+.++++ |.-+.
T Consensus 6 ~~~~~~~li~~--~a~d~~~~~~~~~GGit---~~~~i~~~A~~~gi~~~~h~~-~~~i~ 59 (111)
T PF13378_consen 6 SLHDFRRLIEA--GAVDIVQIDPTRCGGIT---EALRIAALAEAHGIPVMPHSM-ESGIG 59 (111)
T ss_dssp SHHHHHHHHHT--TSCSEEEEBHHHHTSHH---HHHHHHHHHHHTT-EEEEBSS-SSHHH
T ss_pred CHHHHHHHHHc--CCCCEEEeCchhcCCHH---HHHHHHHHHHHhCCCEEecCC-CCcHH
Confidence 67788899883 3356655431110 022 278899999999999999876 54443
No 467
>PRK15446 phosphonate metabolism protein PhnM; Provisional
Probab=41.41 E-value=65 Score=29.24 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=34.7
Q ss_pred CChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 67 MPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
+..+.+++-++++|++|++|.. .. +.-.+-++.|++.|++.+|- .+. .+.++.+++.|..+
T Consensus 211 ~~~e~i~~~v~~A~~~g~~v~s---------H~-~~~~~~i~~a~~~Gv~~~e~-----~~~----~e~~~~~~~~g~~v 271 (383)
T PRK15446 211 YAPPNRRAIAALARARGIPLAS---------HD-DDTPEHVAEAHALGVAIAEF-----PTT----LEAARAARALGMSV 271 (383)
T ss_pred cCHHHHHHHHHHHHHCCCceee---------cC-CCCHHHHHHHHHcCCceeeC-----CCc----HHHHHHHHHCCCEE
Confidence 3445677778888888877722 10 01123355677777777772 122 23345566666655
Q ss_pred c
Q 029925 147 K 147 (185)
Q Consensus 147 ~ 147 (185)
.
T Consensus 272 ~ 272 (383)
T PRK15446 272 L 272 (383)
T ss_pred E
Confidence 4
No 468
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=41.32 E-value=1.7e+02 Score=22.66 Aligned_cols=75 Identities=20% Similarity=0.118 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhCCceecCc--cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCccc-CC--hhHHHHHHHHHHHC--
Q 029925 70 PFIEEVVKRAHQHDVYVSTG--DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLE-IP--EETLLRYVRLVKSA-- 142 (185)
Q Consensus 70 ~~L~eKI~l~~~~gV~v~~G--tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~-i~--~~~r~~lI~~~~~~-- 142 (185)
+.++.-.+.+..+.+++..| ..-.. ...+..-+..+.+++.|.++|.+-.-.-- .+ .+.-.+.++.+.+.
T Consensus 35 ~~i~~~~~~~~~~~~~v~~~v~~~~~~---~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~ 111 (201)
T cd00945 35 GYVRLAADALAGSDVPVIVVVGFPTGL---TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAAD 111 (201)
T ss_pred HHHHHHHHHhCCCCCeEEEEecCCCCC---CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 55555555555435665553 11100 11124556677889999999998644332 22 45556767676665
Q ss_pred -CCeec
Q 029925 143 -GLKAK 147 (185)
Q Consensus 143 -Gf~v~ 147 (185)
++.+.
T Consensus 112 ~~~pv~ 117 (201)
T cd00945 112 GGLPLK 117 (201)
T ss_pred CCceEE
Confidence 67664
No 469
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=41.07 E-value=1.5e+02 Score=23.51 Aligned_cols=113 Identities=14% Similarity=0.137 Sum_probs=68.5
Q ss_pred CCCceeEecCCCCCCcchhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC---cc--------H
Q 029925 23 RFGVTEMRSPHYTLSSSHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST---GD--------W 91 (185)
Q Consensus 23 ~~GlTmV~DkG~s~~~g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~---Gt--------l 91 (185)
..|++.+.+++.++. ..++.-++..-+--|.+=+-.+...+.+.+.|++-++.++.++.-+.| || +
T Consensus 63 ~~~v~~i~~~~~G~~---~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~~~~vi~p~~~GG~p~l~~~~~ 139 (195)
T TIGR03552 63 NLGAPVLRDPGPGLN---NALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATEGDVVIAPDRGGGTNALFLRPP 139 (195)
T ss_pred hcCCEEEecCCCCHH---HHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhcccCCEEEEecCCCCeeEEEECCC
Confidence 347888888774222 223333332111124566777788888888999999988766554443 43 1
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHH
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRL 138 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~ 138 (185)
++.....+.+++.+-+..+.+.+...+++.+-.+.++-++...|-+.
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DiDtp~Dl~~~ 186 (195)
T TIGR03552 140 SALRPAFGGDSFLRHRRSAAKRGLRVRIYDSFGLALDVDTPEDLAEA 186 (195)
T ss_pred CccCCCcCchHHHHHHHHHHHcCCceEeecCCceeecCCCHHHHHHH
Confidence 11222334456777788888899999999987654555555455443
No 470
>PRK10551 phage resistance protein; Provisional
Probab=41.03 E-value=75 Score=30.17 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=58.2
Q ss_pred CCCCceeEec-CCCCCCcchhHHHHHHHhhcccccEEeeeC------cccccCChhHHHHHHHHHHhCCceecC-c--cH
Q 029925 22 RRFGVTEMRS-PHYTLSSSHNVLEDIFESMGQFVDGLKFSG------GSHSLMPKPFIEEVVKRAHQHDVYVST-G--DW 91 (185)
Q Consensus 22 R~~GlTmV~D-kG~s~~~g~~~~eDlLe~ag~yID~lKfg~------GTs~l~p~~~L~eKI~l~~~~gV~v~~-G--tl 91 (185)
|..|....+| -|-... ++.+++++ .+|+||+-- ++.. ....+++..|+++|+.|+.+.- | |.
T Consensus 407 r~~G~~ialDDFGtg~s-sl~~L~~l------~vD~lKID~~fv~~i~~~~-~~~~il~~ii~la~~lgi~vVAEGVEt~ 478 (518)
T PRK10551 407 HSQGIEIAIDDFGTGHS-ALIYLERF------TLDYLKIDRGFIQAIGTET-VTSPVLDAVLTLAKRLNMLTVAEGVETP 478 (518)
T ss_pred HHCCCEEEEECCCCCch-hHHHHHhC------CCCEEEECHHHHhhhccCh-HHHHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence 5568877776 343111 33333333 699999873 2222 1234789999999999998765 5 32
Q ss_pred HHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHH
Q 029925 92 AEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVR 137 (185)
Q Consensus 92 fE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~ 137 (185)
+=++.++++|++.+-=-==+-++|.++..++++
T Consensus 479 -------------~q~~~L~~~Gv~~~QGy~f~kP~~~~~~~~~l~ 511 (518)
T PRK10551 479 -------------EQARWLRERGVNFLQGYWISRPLPLEDFVRWLK 511 (518)
T ss_pred -------------HHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHh
Confidence 223457778888775211123677777776664
No 471
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.93 E-value=1.7e+02 Score=26.89 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=71.9
Q ss_pred ceeEecCCCCCCcchhHHHHHHHhhcccccE---EeeeCcccccCChhHHHHHHHHHHhCCc-eecCc--cHHHHHHHh-
Q 029925 26 VTEMRSPHYTLSSSHNVLEDIFESMGQFVDG---LKFSGGSHSLMPKPFIEEVVKRAHQHDV-YVSTG--DWAEHLIRN- 98 (185)
Q Consensus 26 lTmV~DkG~s~~~g~~~~eDlLe~ag~yID~---lKfg~GTs~l~p~~~L~eKI~l~~~~gV-~v~~G--tlfE~al~q- 98 (185)
-|.-+.-|-|..-.+..++.+++..-.+..+ .-+ |.-.-|..+-+++++.++++|| .++.| ++-+..+..
T Consensus 64 ~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ei---tiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~d~~L~~l 140 (390)
T PRK06582 64 KSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEI---TLETNPTSFETEKFKAFKLAGINRVSIGVQSLKEDDLKKL 140 (390)
T ss_pred eEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEE---EEEeCCCcCCHHHHHHHHHCCCCEEEEECCcCCHHHHHHc
Confidence 3777777766333788999999888765422 223 3334565656899999999999 88888 677766643
Q ss_pred CC----chHHHHHHHHHHcCCCEEEe--cCCcccCChhHHHHHHHHHHHCC
Q 029925 99 GP----SAFKEYVEDCKQVGFDTIEL--NVGSLEIPEETLLRYVRLVKSAG 143 (185)
Q Consensus 99 g~----~~~~~yl~~~k~lGF~~IEI--SdGti~i~~~~r~~lI~~~~~~G 143 (185)
|+ +.+.+-++.+++. |..|-+ --|.=--+.+++.+=++.+.+.+
T Consensus 141 gR~h~~~~~~~ai~~~~~~-~~~v~~DlI~GlPgqt~e~~~~~l~~~~~l~ 190 (390)
T PRK06582 141 GRTHDCMQAIKTIEAANTI-FPRVSFDLIYARSGQTLKDWQEELKQAMQLA 190 (390)
T ss_pred CCCCCHHHHHHHHHHHHHh-CCcEEEEeecCCCCCCHHHHHHHHHHHHhcC
Confidence 21 2344456666666 654433 33433344456666677777654
No 472
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=40.70 E-value=2.4e+02 Score=24.37 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=31.8
Q ss_pred chhHHHHHHHhhcccc-c-EEeeeCc-ccccCChhHHHHHHHHHHhCCceecC
Q 029925 39 SHNVLEDIFESMGQFV-D-GLKFSGG-SHSLMPKPFIEEVVKRAHQHDVYVST 88 (185)
Q Consensus 39 g~~~~eDlLe~ag~yI-D-~lKfg~G-Ts~l~p~~~L~eKI~l~~~~gV~v~~ 88 (185)
++...++.++.+-.|- | .+-++.+ ...-++.+.++.-.++++++|+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~g~~v~~ 191 (325)
T cd01320 139 SPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREAGLRLTA 191 (325)
T ss_pred CHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHCCCceEE
Confidence 4445666665443331 1 4556553 22334667899999999999998876
No 473
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=40.62 E-value=29 Score=31.27 Aligned_cols=93 Identities=13% Similarity=0.009 Sum_probs=54.0
Q ss_pred cCChhHHHHHHHHHHhCCceecC--cc--HHHHHHHhCCchHHHHHHHHHHcC-CCEEEecCCcccCChhHHHHHHHHHH
Q 029925 66 LMPKPFIEEVVKRAHQHDVYVST--GD--WAEHLIRNGPSAFKEYVEDCKQVG-FDTIELNVGSLEIPEETLLRYVRLVK 140 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV~v~~--Gt--lfE~al~qg~~~~~~yl~~~k~lG-F~~IEISdGti~i~~~~r~~lI~~~~ 140 (185)
.|..+.+++.++.|+++||.|.| -+ =.+.++..- .++...++..- -....++.+.++++.++=.++|+.+-
T Consensus 82 ~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~~----pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ll 157 (357)
T cd06563 82 FYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAAY----PELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLEDVL 157 (357)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHhC----ccccCCCCCCccccccCcCCCccCCCChhHHHHHHHHH
Confidence 56677899999999999999987 22 222232221 22211111100 01245677888988887656665444
Q ss_pred HCCCeeccccccccCCCCCCCcccccccc
Q 029925 141 SAGLKAKPKFAVMFNKSDIPSDRDRAFGA 169 (185)
Q Consensus 141 ~~Gf~v~~E~G~k~~~~di~~g~d~~~~~ 169 (185)
++=.. -|+..-|--|+||.+..
T Consensus 158 ~E~~~-------lF~~~~iHiGgDE~~~~ 179 (357)
T cd06563 158 DEVAE-------LFPSPYIHIGGDEVPKG 179 (357)
T ss_pred HHHHH-------hCCCCeEEEeccccCCc
Confidence 33111 13456788888988753
No 474
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=40.57 E-value=54 Score=28.95 Aligned_cols=18 Identities=6% Similarity=-0.105 Sum_probs=8.7
Q ss_pred CChhHHHHHHHHHHhCCc
Q 029925 67 MPKPFIEEVVKRAHQHDV 84 (185)
Q Consensus 67 ~p~~~L~eKI~l~~~~gV 84 (185)
++.+.+.+.++.++++|+
T Consensus 72 ls~eei~~~~~~~~~~G~ 89 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGG 89 (340)
T ss_pred CCHHHHHHHHHHHHHcCC
Confidence 333445555555555554
No 475
>PRK06267 hypothetical protein; Provisional
Probab=40.54 E-value=95 Score=28.00 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=46.8
Q ss_pred cccEEeeeCcccccCChhHHHHHHHHHHhCC---ceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCC-EEEecCCc-c-
Q 029925 53 FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHD---VYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFD-TIELNVGS-L- 125 (185)
Q Consensus 53 yID~lKfg~GTs~l~p~~~L~eKI~l~~~~g---V~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~-~IEISdGt-i- 125 (185)
.++.+=+..|.. + ..+.|.+-++..++.. +.++.| .-.+.+-.. +.-|++ .+|.++-. .
T Consensus 79 Gv~~~~lsgG~~-~-~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~------------~l~Gv~g~~ET~~~~~~~ 144 (350)
T PRK06267 79 GWKLEFISGGYG-Y-TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLN------------EIEGVVGAVETVNPKLHR 144 (350)
T ss_pred CCCEEEEecCCC-C-CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhc------------cccCceeeeecCCHHHHH
Confidence 355443555554 3 4455888888876653 345556 222222111 111222 36666431 1
Q ss_pred ----cCChhHHHHHHHHHHHCCCeec
Q 029925 126 ----EIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 126 ----~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
..+-+++.+.++.+++.|+++.
T Consensus 145 ~i~~~~s~ed~~~~l~~ak~aGi~v~ 170 (350)
T PRK06267 145 EICPGKPLDKIKEMLLKAKDLGLKTG 170 (350)
T ss_pred hhCCCCCHHHHHHHHHHHHHcCCeee
Confidence 4688999999999999999974
No 476
>PRK06256 biotin synthase; Validated
Probab=40.52 E-value=65 Score=28.30 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=42.9
Q ss_pred HHHHHHHHHhCCceecC-c--cHHHHHHHh--CCchHHHH---HHHHHHcCCCEEEecCCcc---cCChhHHHHHHHHHH
Q 029925 72 IEEVVKRAHQHDVYVST-G--DWAEHLIRN--GPSAFKEY---VEDCKQVGFDTIELNVGSL---EIPEETLLRYVRLVK 140 (185)
Q Consensus 72 L~eKI~l~~~~gV~v~~-G--tlfE~al~q--g~~~~~~y---l~~~k~lGF~~IEISdGti---~i~~~~r~~lI~~~~ 140 (185)
-++.++.++++|+..+. | | -+..+.+ ....++++ ++.+++.|+ +++.|.+ .-+.+++.+.++.++
T Consensus 151 ~~e~l~~LkeaG~~~v~~~lEt-s~~~~~~i~~~~t~~~~i~~i~~a~~~Gi---~v~~~~I~GlgEt~ed~~~~~~~l~ 226 (336)
T PRK06256 151 TEEQAERLKEAGVDRYNHNLET-SRSYFPNVVTTHTYEDRIDTCEMVKAAGI---EPCSGGIIGMGESLEDRVEHAFFLK 226 (336)
T ss_pred CHHHHHHHHHhCCCEEecCCcc-CHHHHhhcCCCCCHHHHHHHHHHHHHcCC---eeccCeEEeCCCCHHHHHHHHHHHH
Confidence 34667778888885554 4 4 3333322 12355544 455666775 4565544 356788888888888
Q ss_pred HCCCe
Q 029925 141 SAGLK 145 (185)
Q Consensus 141 ~~Gf~ 145 (185)
+.+..
T Consensus 227 ~l~~~ 231 (336)
T PRK06256 227 ELDAD 231 (336)
T ss_pred hCCCC
Confidence 88765
No 477
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=40.31 E-value=73 Score=32.69 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=51.8
Q ss_pred eeeCcccccC-ChhHHHHHHHHHHhCCce--ecCccHHHHHHHh----C----C--------chH-----HHHHHHHHHc
Q 029925 58 KFSGGSHSLM-PKPFIEEVVKRAHQHDVY--VSTGDWAEHLIRN----G----P--------SAF-----KEYVEDCKQV 113 (185)
Q Consensus 58 Kfg~GTs~l~-p~~~L~eKI~l~~~~gV~--v~~GtlfE~al~q----g----~--------~~~-----~~yl~~~k~l 113 (185)
-|.+.+.... |++..++-|+.+|++||. +.+|.=-|.|..= | . +.+ +++.+.|++.
T Consensus 537 ~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~ 616 (917)
T COG0474 537 VFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEEL 616 (917)
T ss_pred eeehhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhC
Confidence 4444444443 456799999999999994 4578655555422 1 0 000 1222233322
Q ss_pred CCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 114 GFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 114 GF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
. -+-.+++++|.++++..|++|-.|
T Consensus 617 ~--------VfARvsP~qK~~IV~~lq~~g~vV 641 (917)
T COG0474 617 S--------VFARVSPEQKARIVEALQKSGHVV 641 (917)
T ss_pred c--------EEEEcCHHHHHHHHHHHHhCCCEE
Confidence 2 466889999999999999999998
No 478
>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal. The structure of Q8U2K6 from SWISSPROT from Pyrococcus furiosus has been resolved to 2.7A and is suggested to be a putative N-type pytophosphatase. In some members of the family e.g. Q12429 from SWISSPROT, this domain is associated with IPR006175 from INTERPRO, another domain of unknown function. Proteins with this uncharacterised domain include two apparent ortholog families in the archaea, one of which is universal among the first four completed archaeal genomes. The domain comprises the full length of the archaeal proteins and the first third of fungal proteins.; PDB: 3RK0_A 3RK1_A 3RJZ_A 2D13_D.
Probab=40.21 E-value=1.3e+02 Score=25.63 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCCEEEecCCcc
Q 029925 104 KEYVEDCKQVGFDTIELNVGSL 125 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEISdGti 125 (185)
.+++++.-+.||++|=++..+.
T Consensus 124 ~~ll~e~i~~Gf~aiIv~V~~~ 145 (218)
T PF01902_consen 124 EELLREFIESGFEAIIVKVDAD 145 (218)
T ss_dssp HHHHHHHHHTT-EEEEEEEEST
T ss_pred HHHHHHHHHCCCeEEEEEEecc
Confidence 3555556666666665544443
No 479
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=40.10 E-value=2.5e+02 Score=24.74 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=61.2
Q ss_pred hHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCc---eecCccHHHHHH--HhCCch---HHHHHHHHHH
Q 029925 41 NVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV---YVSTGDWAEHLI--RNGPSA---FKEYVEDCKQ 112 (185)
Q Consensus 41 ~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV---~v~~GtlfE~al--~qg~~~---~~~yl~~~k~ 112 (185)
..+.++++.+.++-.+-+++. .++-..+.+.++.++++|+ .++.-++=+..+ ..+++. +-+-++.+++
T Consensus 76 ~dl~~li~~i~~~~~l~~i~i----tTNG~ll~~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~ 151 (329)
T PRK13361 76 RGCDQLVARLGKLPGLEELSL----TTNGSRLARFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA 151 (329)
T ss_pred ccHHHHHHHHHhCCCCceEEE----EeChhHHHHHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence 356677776655432213433 2333335667788888877 344434322111 122224 4555667788
Q ss_pred cCCCEEEecCCccc-CChhHHHHHHHHHHHCCCee
Q 029925 113 VGFDTIELNVGSLE-IPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 113 lGF~~IEISdGti~-i~~~~r~~lI~~~~~~Gf~v 146 (185)
.|+..|.|+-=.+. .+.++..++++.+++.|..+
T Consensus 152 ~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~ 186 (329)
T PRK13361 152 AGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDI 186 (329)
T ss_pred cCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeE
Confidence 99976777643333 67788899999999999876
No 480
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=40.06 E-value=79 Score=26.45 Aligned_cols=43 Identities=33% Similarity=0.444 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCee
Q 029925 104 KEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 104 ~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
++.++.++++|||++-+. |=..+-..+-..+.++.+++.|+..
T Consensus 63 ~~~~~~l~~~G~d~~~laNNH~fD~G~~gl~~t~~~l~~a~i~~ 106 (239)
T smart00854 63 PENAAALKAAGFDVVSLANNHSLDYGEEGLLDTLAALDAAGIAH 106 (239)
T ss_pred HHHHHHHHHhCCCEEEeccCcccccchHHHHHHHHHHHHCCCCE
Confidence 678889999999999998 6788999888888998888888776
No 481
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=39.96 E-value=63 Score=27.12 Aligned_cols=40 Identities=20% Similarity=0.282 Sum_probs=29.8
Q ss_pred hHHHHHHHhh--cccccEEeeeCcccccCChhHHHHHHHHHHhCCc
Q 029925 41 NVLEDIFESM--GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDV 84 (185)
Q Consensus 41 ~~~eDlLe~a--g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV 84 (185)
..+++-|++. .--+|.+|+|. |.+.+.++..++.++++++
T Consensus 53 ~~~~~q~~~~~~d~~~~aikiG~----l~~~~~~~~i~~~~~~~~~ 94 (254)
T TIGR00097 53 DFVEAQLDAVFSDIPVDAAKTGM----LASAEIVEAVARKLREYPV 94 (254)
T ss_pred HHHHHHHHHHHhCCCCCEEEECC----cCCHHHHHHHHHHHHhcCC
Confidence 3444444433 23589999996 7788899999999999988
No 482
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=39.92 E-value=49 Score=32.91 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=44.5
Q ss_pred HHHHHHHHHhCCcee--cCcc--HHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCee
Q 029925 72 IEEVVKRAHQHDVYV--STGD--WAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 72 L~eKI~l~~~~gV~v--~~Gt--lfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
|+|+.+-+|+-||+. |+|. +--.++++- --+|+|+.+|+ +|+|.++|++-++.|=-|
T Consensus 452 i~ERf~elR~MgIkTvM~TGDN~~TAa~IA~E-AGVDdfiAeat-----------------PEdK~~~I~~eQ~~grlV 512 (681)
T COG2216 452 IKERFAELRKMGIKTVMITGDNPLTAAAIAAE-AGVDDFIAEAT-----------------PEDKLALIRQEQAEGRLV 512 (681)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHH-hCchhhhhcCC-----------------hHHHHHHHHHHHhcCcEE
Confidence 899999999999943 4683 444444432 26999998885 899999999999998776
No 483
>PRK14085 imidazolonepropionase; Provisional
Probab=39.89 E-value=1.3e+02 Score=26.80 Aligned_cols=41 Identities=2% Similarity=0.021 Sum_probs=28.2
Q ss_pred HHhhcccccEEeeeCcccccCChhHHHHHHHHHHhCCceecC
Q 029925 47 FESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVST 88 (185)
Q Consensus 47 Le~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~ 88 (185)
+..+.++.|.+|+-... -.++.+.+++-++.++++|+.+..
T Consensus 185 ~~~~~~~~~~idi~~~~-~~~~~~~l~~~~~~a~~~g~~v~~ 225 (382)
T PRK14085 185 LDAVAPHARWIDVFCER-GAFDEDQSRRVLTAGRAAGLGLRV 225 (382)
T ss_pred HHHHHHhCCeEEEEecC-CCCCHHHHHHHHHHHHHcCCCeEE
Confidence 45556677777764322 245567799999999999986654
No 484
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=39.77 E-value=97 Score=26.65 Aligned_cols=69 Identities=29% Similarity=0.445 Sum_probs=46.9
Q ss_pred cCChhHHHHHHHHHHhCCc-eecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEe-cCCcccCChhHHHHHHHHHHHC
Q 029925 66 LMPKPFIEEVVKRAHQHDV-YVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIEL-NVGSLEIPEETLLRYVRLVKSA 142 (185)
Q Consensus 66 l~p~~~L~eKI~l~~~~gV-~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEI-SdGti~i~~~~r~~lI~~~~~~ 142 (185)
.++.+.+.+.++.+.+.|+ .+.. || |-.+.. .+.+.++.+++.|+..|-| +||+.. + +.++.+++.
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tGG--EPll~~---~l~~iv~~l~~~g~~~v~i~TNG~ll---~---~~~~~l~~~ 107 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITGG--EPLLRK---DLIEIIRRIKDYGIKDVSMTTNGILL---E---KLAKKLKEA 107 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECc--cccccc---CHHHHHHHHHhCCCceEEEEcCchHH---H---HHHHHHHHC
Confidence 5667778889999999998 4443 53 433333 5788999999999955554 456542 1 356667777
Q ss_pred CCe
Q 029925 143 GLK 145 (185)
Q Consensus 143 Gf~ 145 (185)
|+.
T Consensus 108 g~~ 110 (302)
T TIGR02668 108 GLD 110 (302)
T ss_pred CCC
Confidence 774
No 485
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=39.68 E-value=78 Score=26.32 Aligned_cols=44 Identities=30% Similarity=0.419 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCEEEec-CCcccCChhHHHHHHHHHHHCCCee
Q 029925 103 FKEYVEDCKQVGFDTIELN-VGSLEIPEETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 103 ~~~yl~~~k~lGF~~IEIS-dGti~i~~~~r~~lI~~~~~~Gf~v 146 (185)
=++.++.++++|||++-+. |=..+-..+...+.++.+++.|+..
T Consensus 66 ~~~~~~~L~~~G~d~~tlaNNH~fD~G~~gl~~t~~~l~~~~i~~ 110 (239)
T cd07381 66 PPEVADALKAAGFDVVSLANNHTLDYGEEGLLDTLDALDEAGIAH 110 (239)
T ss_pred CHHHHHHHHHhCCCEEEcccccccccchHHHHHHHHHHHHcCCce
Confidence 3678888999999999997 7788898888888888888888875
No 486
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=39.62 E-value=1.9e+02 Score=24.55 Aligned_cols=99 Identities=13% Similarity=0.189 Sum_probs=58.5
Q ss_pred hHHHHHHHhhcc-----cccEEeeeCcccccCChhHHHHHHHHHHhCCce---ec-Cc-cHHHHHHHhCCch-----HHH
Q 029925 41 NVLEDIFESMGQ-----FVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVY---VS-TG-DWAEHLIRNGPSA-----FKE 105 (185)
Q Consensus 41 ~~~eDlLe~ag~-----yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~---v~-~G-tlfE~al~qg~~~-----~~~ 105 (185)
-.|+|+|+.+.+ +|+ ||-..+. .-++...++..+++++++|.. +. .- ...+.+-.+.|+. ...
T Consensus 114 PtL~evl~~~~~~~~~l~iE-iK~~~~~-~~~~~~~~~~v~~~l~~~~~~~~~v~~s~~~~~~~~~~~~p~~~~~~~~~~ 191 (252)
T cd08574 114 PSLAELLRLAKKHNKSVIFD-LRRPPPN-HPYYQSYVNITLDTILASGIPQHQVFWLPDEYRALVRKVAPGFQQVSGRKL 191 (252)
T ss_pred CCHHHHHHHHHHcCCeEEEE-ecCCccc-CccHHHHHHHHHHHHHHcCCCcccEEEccHHHHHHHHHHCCCCeEeecccc
Confidence 378888887653 233 4753321 123345778899999999862 22 22 2333333333321 122
Q ss_pred HHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 106 YVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 106 yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
+....+++|++.+-++...++ .++|+.+++.|+.|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~g~~v~ 227 (252)
T cd08574 192 PVESLRENGISRLNLEYSQLS------AQEIREYSKANISVN 227 (252)
T ss_pred chHHHHhcCCeEEccCcccCC------HHHHHHHHHCCCEEE
Confidence 334556688887766655442 368999999999984
No 487
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=39.53 E-value=95 Score=29.53 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=62.3
Q ss_pred eeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHH--------cCCCEEEecCCcccCCh
Q 029925 58 KFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQ--------VGFDTIELNVGSLEIPE 129 (185)
Q Consensus 58 Kfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~--------lGF~~IEISdGti~i~~ 129 (185)
=||||-|-+ |+| ++..+..|+++|+. =.++|.+..-|..+-+..++.+.+ .|.=.+-.=-||-++=+
T Consensus 255 G~GyGGsCf-PKD-~~AL~~~a~~~~~~---~~ll~avv~vN~~qk~~~~~~i~~~~~l~Gk~iavlgLafKpnTDD~Re 329 (414)
T COG1004 255 GFGYGGSCF-PKD-TKALIANAEELGYD---PNLLEAVVEVNERRKDKLAEKILNHLGLKGKTIAVLGLAFKPNTDDMRE 329 (414)
T ss_pred CCCCCCcCC-cHh-HHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEEeecCCCccchh
Confidence 478888755 666 99999999999973 258888887764454555544433 33334455678888888
Q ss_pred hHHHHHHHHHHHCCCee
Q 029925 130 ETLLRYVRLVKSAGLKA 146 (185)
Q Consensus 130 ~~r~~lI~~~~~~Gf~v 146 (185)
.--+.+|+++++.|-+|
T Consensus 330 Spa~~vi~~L~~~Ga~V 346 (414)
T COG1004 330 SPALDIIKRLQEKGAEV 346 (414)
T ss_pred chHHHHHHHHHHCCCEE
Confidence 88899999999999998
No 488
>PLN02795 allantoinase
Probab=39.50 E-value=3.2e+02 Score=25.85 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=22.0
Q ss_pred CChh-HHHHHHHHHHHCCCeecccccccc
Q 029925 127 IPEE-TLLRYVRLVKSAGLKAKPKFAVMF 154 (185)
Q Consensus 127 i~~~-~r~~lI~~~~~~Gf~v~~E~G~k~ 154 (185)
++.. +-.++|+++++.|..|..|+-...
T Consensus 293 iSt~~~~~e~i~~ak~~G~~Vt~Ev~ph~ 321 (505)
T PLN02795 293 LSDAESSLELIKEAKAKGDSVTVETCPHY 321 (505)
T ss_pred CCChHHHHHHHHHHHHCCCcEEEEeChhh
Confidence 4445 678999999999999988886643
No 489
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=39.49 E-value=91 Score=26.19 Aligned_cols=93 Identities=17% Similarity=0.282 Sum_probs=62.6
Q ss_pred ccccCChhH----HHHHHHHHHhCCceecCc-----cHHHHHHHhCCc-------------hHHHHHHHHHHcCCCEEEe
Q 029925 63 SHSLMPKPF----IEEVVKRAHQHDVYVSTG-----DWAEHLIRNGPS-------------AFKEYVEDCKQVGFDTIEL 120 (185)
Q Consensus 63 Ts~l~p~~~----L~eKI~l~~~~gV~v~~G-----tlfE~al~qg~~-------------~~~~yl~~~k~lGF~~IEI 120 (185)
..-++|.+. +++-.++++..||++.-+ .|++.+-..... ++++=.+.++++|||+.-
T Consensus 31 NPNIhP~~Ey~~R~~~~~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e~gfd~Ft- 109 (176)
T PF02677_consen 31 NPNIHPYEEYERRLEELKRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKELGFDYFT- 109 (176)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHHcCCCEEE-
Confidence 344555432 455677888899977654 388776543221 578888999999999984
Q ss_pred cCCcccCChhHHHHHHHHHHHCCCeeccccccccCCCCCCC
Q 029925 121 NVGSLEIPEETLLRYVRLVKSAGLKAKPKFAVMFNKSDIPS 161 (185)
Q Consensus 121 SdGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~di~~ 161 (185)
.|+.+|+-...++|..+ |-.+--+.|+++--.|+-.
T Consensus 110 --TTL~~Sp~k~~~~I~~i---G~~~~~~~gv~f~~~DfRk 145 (176)
T PF02677_consen 110 --TTLLISPYKNHELINEI---GERLAKEYGVEFLYRDFRK 145 (176)
T ss_pred --ccccCcCccCHHHHHHH---HHHHHHhhCCeEEeecccc
Confidence 67888888887777654 3334455577766666655
No 490
>PLN02161 beta-amylase
Probab=39.43 E-value=65 Score=31.54 Aligned_cols=68 Identities=22% Similarity=0.172 Sum_probs=45.1
Q ss_pred hCCceecCccHHHHHH--------HhCCchHHHHHHHHHHcCCCEEEecC--Ccc------cCChhHHHHHHHHHHHCCC
Q 029925 81 QHDVYVSTGDWAEHLI--------RNGPSAFKEYVEDCKQVGFDTIELNV--GSL------EIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 81 ~~gV~v~~GtlfE~al--------~qg~~~~~~yl~~~k~lGF~~IEISd--Gti------~i~~~~r~~lI~~~~~~Gf 144 (185)
..+|+||-+--++.+- .++++.+...|+.+|.+|++.|+|.- |-+ .-+=.--.++.+++++.||
T Consensus 89 ~~~vpvyVMlPLD~V~~~~~~~~~v~~~~al~~~L~~LK~~GVdGVmvDVWWGiVE~~~p~~YdWsgY~~l~~mvr~~GL 168 (531)
T PLN02161 89 HKRVPVFVMMPVDTFGIDASGCPKIKRLKALTVSLKALKLAGVHGIAVEVWWGIVERFSPLEFKWSLYEELFRLISEAGL 168 (531)
T ss_pred CCCeeEEEEeecceeccCcccccccCCHHHHHHHHHHHHHcCCCEEEEEeeeeeeecCCCCcCCcHHHHHHHHHHHHcCC
Confidence 3456666553333321 23345789999999999999998753 333 3344556788999999999
Q ss_pred eecc
Q 029925 145 KAKP 148 (185)
Q Consensus 145 ~v~~ 148 (185)
|+.+
T Consensus 169 Klq~ 172 (531)
T PLN02161 169 KLHV 172 (531)
T ss_pred eEEE
Confidence 9843
No 491
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=39.42 E-value=87 Score=25.68 Aligned_cols=44 Identities=18% Similarity=0.310 Sum_probs=31.6
Q ss_pred HHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeecccc
Q 029925 105 EYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAKPKF 150 (185)
Q Consensus 105 ~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~~E~ 150 (185)
+.++.|.+.|.+.|=+..- .++.++-.++++.++..|+.+..++
T Consensus 85 ~~v~~~~~~Gad~v~l~~~--~~~~~~~~~~~~~~~~~g~~~~v~v 128 (217)
T cd00331 85 YQIYEARAAGADAVLLIVA--ALDDEQLKELYELARELGMEVLVEV 128 (217)
T ss_pred HHHHHHHHcCCCEEEEeec--cCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 3677888888888887443 3455666788888888888875554
No 492
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=39.38 E-value=65 Score=30.88 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCCeec
Q 029925 102 AFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGLKAK 147 (185)
Q Consensus 102 ~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf~v~ 147 (185)
-++.|++.+.+.|++.+-|-|..-+++. -...|+.+++.|..|.
T Consensus 106 vv~~fv~~a~~~Gidi~Rifd~lnd~~n--~~~ai~~ak~~G~~~~ 149 (468)
T PRK12581 106 IVDKFISLSAQNGIDVFRIFDALNDPRN--IQQALRAVKKTGKEAQ 149 (468)
T ss_pred HHHHHHHHHHHCCCCEEEEcccCCCHHH--HHHHHHHHHHcCCEEE
Confidence 5666677777777777777775553332 3346677777777654
No 493
>PRK08185 hypothetical protein; Provisional
Probab=39.37 E-value=1.2e+02 Score=26.94 Aligned_cols=90 Identities=18% Similarity=0.260 Sum_probs=55.8
Q ss_pred EEeeeCcccccCChhHHHHHHHHHHhCCceecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHH-
Q 029925 56 GLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLR- 134 (185)
Q Consensus 56 ~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~- 134 (185)
+|-++-|+...++.+...--.++++++.|+|.. -+-++ .=.+.++.|-+.||+.|=+..-. +|.++-.+
T Consensus 41 Il~~~~~~~~~~~~~~~~~~~~~a~~~~vPV~l------HLDHg--~~~e~i~~ai~~Gf~SVM~D~S~--l~~eeNi~~ 110 (283)
T PRK08185 41 IIAIHPNELDFLGDNFFAYVRERAKRSPVPFVI------HLDHG--ATIEDVMRAIRCGFTSVMIDGSL--LPYEENVAL 110 (283)
T ss_pred EEEeCcchhhhccHHHHHHHHHHHHHCCCCEEE------ECCCC--CCHHHHHHHHHcCCCEEEEeCCC--CCHHHHHHH
Confidence 344455554445555555555677777777764 01111 11234556778999999887654 56666544
Q ss_pred ---HHHHHHHCCCeeccccccccCC
Q 029925 135 ---YVRLVKSAGLKAKPKFAVMFNK 156 (185)
Q Consensus 135 ---lI~~~~~~Gf~v~~E~G~k~~~ 156 (185)
+++.+...|..|--|+|. .+.
T Consensus 111 t~~vv~~a~~~gv~vE~ElG~-vg~ 134 (283)
T PRK08185 111 TKEVVELAHKVGVSVEGELGT-IGN 134 (283)
T ss_pred HHHHHHHHHHcCCeEEEEEee-ccC
Confidence 555566789999999988 443
No 494
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=39.36 E-value=1.1e+02 Score=26.19 Aligned_cols=103 Identities=14% Similarity=0.160 Sum_probs=67.2
Q ss_pred chhHHHHHHHhhcccccEEeeeCcccccCChhHHHHHHHHHHhC----------C--ceecCccHHHHHHHhCCchHHHH
Q 029925 39 SHNVLEDIFESMGQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQH----------D--VYVSTGDWAEHLIRNGPSAFKEY 106 (185)
Q Consensus 39 g~~~~eDlLe~ag~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~----------g--V~v~~GtlfE~al~qg~~~~~~y 106 (185)
....++.+|+...+ |+-.||.++..++.+++-.+.+-+. | ..+.+.||-| ..- ...++
T Consensus 85 s~e~~~~~l~~Ga~-----~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~---~~~--~~~~~ 154 (243)
T TIGR01919 85 DDSSLRAALTGGRA-----RVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSD---GGG--DLEVL 154 (243)
T ss_pred CHHHHHHHHHcCCC-----EEEECchhhCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeec---CCC--cHHHH
Confidence 55566667886555 4577999999999888776665221 1 1333446755 333 78999
Q ss_pred HHHHHHcCCCEEEec----CCcccCChhHHHHHHHHHHHCCCeeccccccc
Q 029925 107 VEDCKQVGFDTIELN----VGSLEIPEETLLRYVRLVKSAGLKAKPKFAVM 153 (185)
Q Consensus 107 l~~~k~lGF~~IEIS----dGti~i~~~~r~~lI~~~~~~Gf~v~~E~G~k 153 (185)
++++.++|+..|=+- ||+..=++-+..+-++... ...|+.-=|+.
T Consensus 155 ~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l~~~l~~~~--~~pviasGGv~ 203 (243)
T TIGR01919 155 ERLLDSGGCSRVVVTDSKKDGLSGGPNELLLEVVAART--DAIVAASGGSS 203 (243)
T ss_pred HHHHHhCCCCEEEEEecCCcccCCCcCHHHHHHHHhhC--CCCEEEECCcC
Confidence 999999999988764 6887766666544444332 45555444544
No 495
>PRK10060 RNase II stability modulator; Provisional
Probab=39.23 E-value=81 Score=30.55 Aligned_cols=63 Identities=16% Similarity=0.184 Sum_probs=38.8
Q ss_pred HHHcCCCEEEecCCccc-C-----ChhHHHHHHHHHHHCCCeeccccccccCCC---CCCCcccccccccccc
Q 029925 110 CKQVGFDTIELNVGSLE-I-----PEETLLRYVRLVKSAGLKAKPKFAVMFNKS---DIPSDRDRAFGAYVAR 173 (185)
Q Consensus 110 ~k~lGF~~IEISdGti~-i-----~~~~r~~lI~~~~~~Gf~v~~E~G~k~~~~---di~~g~d~~~~~~~~~ 173 (185)
++++.+|.|-|+-.++. + ....-..+|..+++.|++|..| |+..... --..|-|-.=|-|+.+
T Consensus 572 L~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viAe-GVEt~~q~~~l~~~G~d~~QGy~~~~ 643 (663)
T PRK10060 572 LARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAE-GVETAKEDAFLTKNGVNERQGFLFAK 643 (663)
T ss_pred HHhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEEe-cCCCHHHHHHHHHcCCCEEecCccCC
Confidence 44556777777765552 2 2233456789999999999877 5554431 2244555555766654
No 496
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=39.19 E-value=1.9e+02 Score=25.73 Aligned_cols=72 Identities=11% Similarity=0.150 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhCCc---eecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChhHHHHHHHHHHHCCC
Q 029925 69 KPFIEEVVKRAHQHDV---YVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEETLLRYVRLVKSAGL 144 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV---~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~~r~~lI~~~~~~Gf 144 (185)
+..+++--+.++++|. .+.+| +..+ .+ ..++..+.+++.|++.+++++..-.=+.+.-.++++.+++.+.
T Consensus 8 ~g~l~~l~~~l~~~~~~~~lvv~~~~~~~----~~--~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~ 81 (370)
T cd08551 8 AGAIEKLGEEIKNLGGRKALIVTDPGLVK----TG--VLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGC 81 (370)
T ss_pred cCHHHHHHHHHHHcCCCeEEEEeCcchhh----Cc--cHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCC
Confidence 3445666666666553 34445 3322 23 5566666677778887777776666777777788888887776
Q ss_pred ee
Q 029925 145 KA 146 (185)
Q Consensus 145 ~v 146 (185)
.+
T Consensus 82 d~ 83 (370)
T cd08551 82 DG 83 (370)
T ss_pred CE
Confidence 65
No 497
>PRK05588 histidinol-phosphatase; Provisional
Probab=38.94 E-value=1.1e+02 Score=25.92 Aligned_cols=75 Identities=15% Similarity=0.153 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhCCc--eecCccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCcccCChh--HHHHHHHHHHHCCC
Q 029925 69 KPFIEEVVKRAHQHDV--YVSTGDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGSLEIPEE--TLLRYVRLVKSAGL 144 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV--~v~~GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGti~i~~~--~r~~lI~~~~~~Gf 144 (185)
.+.+++-++.+.++|+ .+.++++. ...... -....++.|+++|...|-|+...-....= ...+.++.+++.||
T Consensus 165 ~~~~~~il~~~~~~g~~lEINt~~l~-~~~~~~--~~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~~~~~l~~~G~ 241 (255)
T PRK05588 165 KEIIDEILKVLIEKEKVLEINTRRLD-DKRSVE--NLVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKFALEIAEYCNL 241 (255)
T ss_pred HHHHHHHHHHHHHcCCEEEEECcccC-CCCCCC--CHHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHHHHHHHHHcCC
Q ss_pred ee
Q 029925 145 KA 146 (185)
Q Consensus 145 ~v 146 (185)
++
T Consensus 242 ~~ 243 (255)
T PRK05588 242 KP 243 (255)
T ss_pred EE
No 498
>PRK06256 biotin synthase; Validated
Probab=38.85 E-value=74 Score=27.93 Aligned_cols=68 Identities=22% Similarity=0.261 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhC-CceecC-ccHHHHHHHhCCchHHHHHHHHHHcCCCEEEecCCc---------ccCChhHHHHHHHHH
Q 029925 71 FIEEVVKRAHQH-DVYVST-GDWAEHLIRNGPSAFKEYVEDCKQVGFDTIELNVGS---------LEIPEETLLRYVRLV 139 (185)
Q Consensus 71 ~L~eKI~l~~~~-gV~v~~-GtlfE~al~qg~~~~~~yl~~~k~lGF~~IEISdGt---------i~i~~~~r~~lI~~~ 139 (185)
.+.+.++..+++ ++.++. .+. .-++.++.+++.|++.|-++--| -.-+-+++.+.|+.+
T Consensus 127 ~~~e~i~~i~~~~~i~~~~~~g~----------l~~e~l~~LkeaG~~~v~~~lEts~~~~~~i~~~~t~~~~i~~i~~a 196 (336)
T PRK06256 127 QVVEAVKAIKEETDLEICACLGL----------LTEEQAERLKEAGVDRYNHNLETSRSYFPNVVTTHTYEDRIDTCEMV 196 (336)
T ss_pred HHHHHHHHHHhcCCCcEEecCCc----------CCHHHHHHHHHhCCCEEecCCccCHHHHhhcCCCCCHHHHHHHHHHH
Confidence 466666666654 443332 121 23567788999999998763111 123568889999999
Q ss_pred HHCCCeecc
Q 029925 140 KSAGLKAKP 148 (185)
Q Consensus 140 ~~~Gf~v~~ 148 (185)
++.|+.|.+
T Consensus 197 ~~~Gi~v~~ 205 (336)
T PRK06256 197 KAAGIEPCS 205 (336)
T ss_pred HHcCCeecc
Confidence 999998854
No 499
>PLN02428 lipoic acid synthase
Probab=38.60 E-value=30 Score=31.84 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHhCCceecC-ccHH-------HHHHHhCCchHHHHHHHHHHcCCCEEEecC
Q 029925 69 KPFIEEVVKRAHQHDVYVST-GDWA-------EHLIRNGPSAFKEYVEDCKQVGFDTIELNV 122 (185)
Q Consensus 69 ~~~L~eKI~l~~~~gV~v~~-Gtlf-------E~al~qg~~~~~~yl~~~k~lGF~~IEISd 122 (185)
++.+.+-++.++++|+.+.+ |-++ .+.-.=.|+.|++|-+.+.++||.+|+-.-
T Consensus 261 ~Edv~e~l~~Lrelgvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~v~sgp 322 (349)
T PLN02428 261 DEEVVQTMEDLRAAGVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRYVASGP 322 (349)
T ss_pred HHHHHHHHHHHHHcCCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCceEEecC
Confidence 45599999999999986665 6442 111111356899999999999999998543
No 500
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=38.42 E-value=51 Score=28.38 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=47.9
Q ss_pred HHHHHhh-cccccEEeeeCcccccCChhHHHHHHHHHHhCCceecCc-cHHHHHHHhCCchHHHHHHHHHHcCCCEEEec
Q 029925 44 EDIFESM-GQFVDGLKFSGGSHSLMPKPFIEEVVKRAHQHDVYVSTG-DWAEHLIRNGPSAFKEYVEDCKQVGFDTIELN 121 (185)
Q Consensus 44 eDlLe~a-g~yID~lKfg~GTs~l~p~~~L~eKI~l~~~~gV~v~~G-tlfE~al~qg~~~~~~yl~~~k~lGF~~IEIS 121 (185)
+.+++.. .+|||+= + -.+.+.+++-++.+|++|+.+-.= --|+.--.. +.+.+.++.++++|.|.|-|-
T Consensus 102 ~~~~~~~~~d~vDiE-l------~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~--~~l~~~~~~~~~~gaDivKia 172 (253)
T PRK02412 102 KAVIKSGLPDYIDVE-L------FSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPK--EEIVERLRKMESLGADIVKIA 172 (253)
T ss_pred HHHHhcCCCCEEEEe-c------cCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCH--HHHHHHHHHHHHhCCCEEEEE
Confidence 4444443 4888872 1 234567888889999888854320 001000000 135677888999999999986
Q ss_pred CCcccCChhHHHHHHH
Q 029925 122 VGSLEIPEETLLRYVR 137 (185)
Q Consensus 122 dGti~i~~~~r~~lI~ 137 (185)
--.-+. +|-+++++
T Consensus 173 ~~a~~~--~D~~~ll~ 186 (253)
T PRK02412 173 VMPQSE--QDVLTLLN 186 (253)
T ss_pred ecCCCH--HHHHHHHH
Confidence 544433 33344443
Done!