Query 029926
Match_columns 185
No_of_seqs 145 out of 1034
Neff 3.1
Searched_HMMs 46136
Date Fri Mar 29 05:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029926.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029926hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0041 PurE Phosphoribosylcar 100.0 1.6E-31 3.6E-36 219.2 9.0 73 113-185 3-75 (162)
2 TIGR01162 purE phosphoribosyla 99.9 1.3E-27 2.8E-32 194.7 7.3 71 115-185 1-71 (156)
3 PLN02948 phosphoribosylaminoim 99.9 1.7E-26 3.8E-31 215.0 10.8 110 69-185 374-483 (577)
4 PF00731 AIRC: AIR carboxylase 99.9 5.1E-27 1.1E-31 189.5 5.1 73 113-185 1-73 (150)
5 COG1691 NCAIR mutase (PurE)-re 99.4 1.8E-13 3.9E-18 119.2 6.2 99 83-185 81-190 (254)
6 KOG2835 Phosphoribosylamidoimi 99.0 1.3E-10 2.8E-15 106.1 0.6 103 70-185 179-281 (373)
7 cd08170 GlyDH Glycerol dehydro 95.9 0.035 7.6E-07 48.6 7.5 67 113-179 23-89 (351)
8 cd08550 GlyDH-like Glycerol_de 95.8 0.037 7.9E-07 48.6 7.4 67 113-179 23-89 (349)
9 cd08185 Fe-ADH1 Iron-containin 95.2 0.08 1.7E-06 47.1 7.5 67 113-179 26-95 (380)
10 cd08183 Fe-ADH2 Iron-containin 95.1 0.088 1.9E-06 46.8 7.2 65 113-179 23-87 (374)
11 cd08551 Fe-ADH iron-containing 94.9 0.11 2.3E-06 45.8 7.2 67 113-179 24-92 (370)
12 PRK09423 gldA glycerol dehydro 94.6 0.16 3.4E-06 45.1 7.8 67 113-179 30-96 (366)
13 cd08171 GlyDH-like2 Glycerol d 94.6 0.12 2.6E-06 45.5 7.0 67 113-179 23-90 (345)
14 cd08195 DHQS Dehydroquinate sy 94.5 0.23 4.9E-06 43.7 8.5 67 113-179 25-97 (345)
15 cd08175 G1PDH Glycerol-1-phosp 94.5 0.16 3.4E-06 44.6 7.3 66 113-179 24-92 (348)
16 TIGR01357 aroB 3-dehydroquinat 94.2 0.28 6.2E-06 42.9 8.4 67 113-179 21-93 (344)
17 PRK00843 egsA NAD(P)-dependent 94.2 0.24 5.3E-06 43.8 8.0 65 113-179 35-99 (350)
18 cd08182 HEPD Hydroxyethylphosp 94.2 0.19 4E-06 44.5 7.2 65 113-179 24-89 (367)
19 cd08194 Fe-ADH6 Iron-containin 94.1 0.17 3.6E-06 45.1 6.8 67 113-179 24-92 (375)
20 cd08186 Fe-ADH8 Iron-containin 94.0 0.18 3.8E-06 45.1 6.8 67 113-179 27-96 (383)
21 cd08176 LPO Lactadehyde:propan 94.0 0.16 3.5E-06 45.2 6.4 67 113-179 29-97 (377)
22 PF00465 Fe-ADH: Iron-containi 93.9 0.15 3.3E-06 44.8 6.0 65 114-179 23-90 (366)
23 cd08178 AAD_C C-terminal alcoh 93.8 0.19 4.1E-06 45.2 6.6 67 113-179 22-90 (398)
24 cd08187 BDH Butanol dehydrogen 93.6 0.22 4.7E-06 44.5 6.6 67 113-179 29-98 (382)
25 cd08192 Fe-ADH7 Iron-containin 93.5 0.26 5.7E-06 43.6 6.8 67 113-179 25-93 (370)
26 PRK00002 aroB 3-dehydroquinate 93.4 0.49 1.1E-05 42.0 8.4 67 113-179 32-104 (358)
27 cd08181 PPD-like 1,3-propanedi 93.4 0.24 5.3E-06 43.9 6.4 67 113-179 26-95 (357)
28 TIGR02638 lactal_redase lactal 93.4 0.25 5.3E-06 44.2 6.5 67 113-179 30-98 (379)
29 cd08197 DOIS 2-deoxy-scyllo-in 93.1 0.56 1.2E-05 42.2 8.5 66 113-178 24-95 (355)
30 cd08173 Gro1PDH Sn-glycerol-1- 93.1 0.54 1.2E-05 41.2 8.1 65 113-179 26-90 (339)
31 cd08179 NADPH_BDH NADPH-depend 93.1 0.33 7.2E-06 43.2 6.9 67 113-179 24-93 (375)
32 cd08188 Fe-ADH4 Iron-containin 93.0 0.35 7.6E-06 43.2 6.9 67 113-179 29-97 (377)
33 cd08189 Fe-ADH5 Iron-containin 92.9 0.37 8.1E-06 42.9 6.9 67 113-179 27-95 (374)
34 PRK10624 L-1,2-propanediol oxi 92.9 0.33 7.2E-06 43.4 6.6 67 113-179 31-99 (382)
35 cd07766 DHQ_Fe-ADH Dehydroquin 92.5 0.68 1.5E-05 39.9 7.7 66 113-179 24-90 (332)
36 cd08193 HVD 5-hydroxyvalerate 92.4 0.37 8.1E-06 42.8 6.3 67 113-179 27-95 (376)
37 cd08190 HOT Hydroxyacid-oxoaci 92.3 0.6 1.3E-05 42.5 7.5 67 113-179 24-92 (414)
38 PRK15454 ethanol dehydrogenase 92.3 0.32 6.9E-06 44.1 5.7 66 114-179 51-118 (395)
39 cd08199 EEVS 2-epi-5-epi-valio 92.1 0.93 2E-05 40.7 8.4 66 113-178 27-99 (354)
40 PRK09860 putative alcohol dehy 91.7 0.53 1.2E-05 42.4 6.5 67 113-179 32-100 (383)
41 cd08549 G1PDH_related Glycerol 91.5 0.84 1.8E-05 40.2 7.4 66 113-179 25-92 (332)
42 PF04392 ABC_sub_bind: ABC tra 91.0 0.6 1.3E-05 39.6 5.8 66 114-179 1-71 (294)
43 PRK15138 aldehyde reductase; P 90.8 0.57 1.2E-05 42.3 5.8 65 113-179 30-97 (387)
44 PF10096 DUF2334: Uncharacteri 90.7 0.97 2.1E-05 38.6 6.8 52 122-173 12-74 (243)
45 cd03028 GRX_PICOT_like Glutare 90.6 1.5 3.3E-05 31.5 6.8 58 113-172 8-69 (90)
46 PRK01372 ddl D-alanine--D-alan 90.5 0.65 1.4E-05 39.1 5.5 58 110-175 2-64 (304)
47 cd08191 HHD 6-hydroxyhexanoate 89.9 1.4 3E-05 39.6 7.4 65 113-179 23-91 (386)
48 cd03786 GT1_UDP-GlcNAc_2-Epime 89.6 1.6 3.5E-05 36.6 7.1 64 114-177 1-65 (363)
49 PLN02834 3-dehydroquinate synt 89.3 2.1 4.6E-05 39.8 8.3 66 113-178 101-174 (433)
50 PRK11914 diacylglycerol kinase 89.1 2.8 6.1E-05 35.9 8.4 60 114-176 10-73 (306)
51 PRK13055 putative lipid kinase 88.7 2.5 5.5E-05 37.2 8.0 55 120-176 14-68 (334)
52 PRK10703 DNA-binding transcrip 88.6 1.2 2.5E-05 37.3 5.6 63 112-176 59-124 (341)
53 cd08180 PDD 1,3-propanediol de 88.5 1.6 3.4E-05 38.3 6.6 66 113-179 23-90 (332)
54 cd08177 MAR Maleylacetate redu 88.5 1.2 2.5E-05 39.2 5.8 66 113-179 24-89 (337)
55 TIGR00365 monothiol glutaredox 88.2 3.1 6.6E-05 30.7 7.0 59 113-173 12-74 (97)
56 TIGR03702 lip_kinase_YegS lipi 87.3 3.1 6.6E-05 35.7 7.5 58 116-176 4-61 (293)
57 PRK00861 putative lipid kinase 87.2 3.6 7.8E-05 35.2 7.9 59 114-176 4-66 (300)
58 PF13407 Peripla_BP_4: Peripla 86.2 8.6 0.00019 30.5 9.0 64 115-179 1-67 (257)
59 COG2984 ABC-type uncharacteriz 85.5 2.8 6E-05 38.6 6.7 62 117-178 37-99 (322)
60 cd01391 Periplasmic_Binding_Pr 85.3 5.9 0.00013 29.7 7.3 62 115-176 2-67 (269)
61 PRK10727 DNA-binding transcrip 85.3 3 6.4E-05 35.1 6.3 89 85-176 31-124 (343)
62 cd01539 PBP1_GGBP Periplasmic 84.7 4.3 9.3E-05 33.8 7.0 62 114-175 1-65 (303)
63 cd08172 GlyDH-like1 Glycerol d 84.5 2.2 4.7E-05 37.6 5.4 65 113-179 24-88 (347)
64 cd08169 DHQ-like Dehydroquinat 84.3 6.1 0.00013 35.3 8.1 64 113-178 24-94 (344)
65 cd06318 PBP1_ABC_sugar_binding 84.3 9.4 0.0002 30.5 8.5 59 115-175 2-63 (282)
66 PRK14987 gluconate operon tran 84.2 3.5 7.7E-05 34.4 6.2 87 85-174 35-126 (331)
67 PRK13054 lipid kinase; Reviewe 84.1 5 0.00011 34.5 7.3 61 113-176 4-65 (300)
68 COG1454 EutG Alcohol dehydroge 84.1 5.1 0.00011 37.2 7.8 67 113-179 30-98 (377)
69 PRK13337 putative lipid kinase 83.8 3.3 7.1E-05 35.7 6.1 54 120-176 13-66 (304)
70 PRK10586 putative oxidoreducta 83.8 3.6 7.7E-05 37.1 6.5 64 113-179 35-98 (362)
71 PRK13805 bifunctional acetalde 83.7 3.4 7.3E-05 41.2 6.8 65 113-179 481-551 (862)
72 cd08184 Fe-ADH3 Iron-containin 83.7 4.7 0.0001 36.2 7.2 63 114-179 27-93 (347)
73 TIGR00147 lipid kinase, YegS/R 83.6 7.2 0.00016 33.0 7.9 60 114-176 3-66 (293)
74 cd06321 PBP1_ABC_sugar_binding 83.1 12 0.00025 29.9 8.5 61 115-175 2-65 (271)
75 PRK10653 D-ribose transporter 83.0 12 0.00027 30.7 8.9 64 112-177 26-92 (295)
76 COG0695 GrxC Glutaredoxin and 82.9 5.5 0.00012 28.6 6.0 51 121-172 7-59 (80)
77 PF00763 THF_DHG_CYH: Tetrahyd 82.9 4.5 9.8E-05 31.0 5.9 52 114-165 32-84 (117)
78 cd06273 PBP1_GntR_like_1 This 82.6 12 0.00026 29.5 8.4 58 115-174 2-62 (268)
79 cd01542 PBP1_TreR_like Ligand- 82.6 12 0.00026 29.4 8.3 60 115-176 2-64 (259)
80 cd01988 Na_H_Antiporter_C The 82.3 7.6 0.00017 27.6 6.6 53 126-181 56-108 (132)
81 PRK10014 DNA-binding transcrip 82.2 9.3 0.0002 31.9 8.0 68 107-176 59-129 (342)
82 cd06305 PBP1_methylthioribose_ 82.1 13 0.00027 29.5 8.4 61 114-176 1-64 (273)
83 cd00860 ThrRS_anticodon ThrRS 81.8 9.7 0.00021 26.0 6.7 58 114-176 3-60 (91)
84 PRK10076 pyruvate formate lyas 81.0 10 0.00022 32.1 7.8 58 114-172 133-211 (213)
85 cd01537 PBP1_Repressors_Sugar_ 80.8 20 0.00043 27.5 8.8 62 115-178 2-66 (264)
86 COG1597 LCB5 Sphingosine kinas 80.8 5.6 0.00012 35.0 6.5 55 119-176 13-67 (301)
87 PRK09492 treR trehalose repres 80.6 6.2 0.00013 32.5 6.3 87 85-174 34-125 (315)
88 cd06296 PBP1_CatR_like Ligand- 80.4 19 0.0004 28.5 8.8 60 115-176 2-64 (270)
89 cd06283 PBP1_RegR_EndR_KdgR_li 80.4 17 0.00037 28.5 8.5 59 115-175 2-63 (267)
90 PF03358 FMN_red: NADPH-depend 80.3 17 0.00038 27.3 8.3 57 114-174 2-77 (152)
91 PRK08862 short chain dehydroge 80.3 15 0.00032 30.0 8.4 51 126-177 40-93 (227)
92 TIGR01481 ccpA catabolite cont 80.2 5 0.00011 33.3 5.7 87 85-174 31-122 (329)
93 PRK08195 4-hyroxy-2-oxovalerat 80.1 16 0.00035 32.8 9.3 108 64-171 38-161 (337)
94 cd01452 VWA_26S_proteasome_sub 79.6 14 0.00029 31.1 8.1 64 113-176 108-175 (187)
95 cd00859 HisRS_anticodon HisRS 79.4 13 0.00028 24.6 6.6 56 114-174 3-58 (91)
96 cd06298 PBP1_CcpA_like Ligand- 79.2 18 0.00039 28.5 8.3 59 115-175 2-63 (268)
97 PF01380 SIS: SIS domain SIS d 79.1 15 0.00033 26.4 7.4 61 114-175 6-87 (131)
98 cd08174 G1PDH-like Glycerol-1- 79.0 8.8 0.00019 33.5 7.1 61 113-179 26-87 (331)
99 cd03174 DRE_TIM_metallolyase D 78.9 10 0.00022 31.1 7.1 91 82-172 51-164 (265)
100 cd06280 PBP1_LacI_like_4 Ligan 78.7 19 0.00042 28.6 8.4 59 115-175 2-63 (263)
101 cd03027 GRX_DEP Glutaredoxin ( 78.5 18 0.00038 24.4 7.5 54 115-172 3-57 (73)
102 cd04516 TBP_eukaryotes eukaryo 78.2 3.4 7.4E-05 34.3 4.1 85 74-160 6-113 (174)
103 PRK10401 DNA-binding transcrip 77.9 6.9 0.00015 33.0 6.0 88 85-175 31-123 (346)
104 PRK10423 transcriptional repre 77.7 16 0.00034 30.2 7.9 88 85-175 28-120 (327)
105 cd05212 NAD_bind_m-THF_DH_Cycl 77.7 5.1 0.00011 32.0 4.9 57 113-181 29-85 (140)
106 cd06323 PBP1_ribose_binding Pe 77.3 17 0.00038 28.5 7.7 58 115-174 2-62 (268)
107 cd06286 PBP1_CcpB_like Ligand- 77.3 22 0.00048 28.0 8.3 58 115-174 2-62 (260)
108 cd06293 PBP1_LacI_like_11 Liga 77.2 22 0.00049 28.2 8.4 58 115-174 2-62 (269)
109 cd06300 PBP1_ABC_sugar_binding 76.9 23 0.0005 28.2 8.4 46 130-175 20-68 (272)
110 cd06311 PBP1_ABC_sugar_binding 76.8 23 0.00049 28.4 8.3 46 129-174 19-67 (274)
111 cd06275 PBP1_PurR Ligand-bindi 76.4 25 0.00053 27.8 8.4 59 115-175 2-63 (269)
112 cd01540 PBP1_arabinose_binding 76.2 18 0.00039 29.1 7.7 57 115-174 2-61 (289)
113 cd07943 DRE_TIM_HOA 4-hydroxy- 76.1 15 0.00033 31.1 7.6 63 116-179 102-165 (263)
114 PRK06203 aroB 3-dehydroquinate 75.4 14 0.00031 33.9 7.6 67 113-179 43-123 (389)
115 cd01538 PBP1_ABC_xylose_bindin 75.1 28 0.0006 28.6 8.6 60 115-176 2-64 (288)
116 cd06292 PBP1_LacI_like_10 Liga 74.9 27 0.00059 27.8 8.3 58 115-174 2-62 (273)
117 cd06290 PBP1_LacI_like_9 Ligan 74.8 32 0.00068 27.2 8.6 60 115-176 2-64 (265)
118 TIGR03566 FMN_reduc_MsuE FMN r 74.8 20 0.00044 28.3 7.5 58 114-175 1-76 (174)
119 PRK11303 DNA-binding transcrip 74.7 18 0.00039 29.9 7.5 88 85-175 33-125 (328)
120 cd06289 PBP1_MalI_like Ligand- 74.6 32 0.00069 27.0 8.5 60 115-176 2-64 (268)
121 cd01541 PBP1_AraR Ligand-bindi 74.5 29 0.00062 27.7 8.3 60 115-176 2-64 (273)
122 PF13528 Glyco_trans_1_3: Glyc 74.3 21 0.00045 29.6 7.8 58 111-178 191-261 (318)
123 TIGR02417 fruct_sucro_rep D-fr 74.3 20 0.00043 29.8 7.7 88 85-175 32-124 (327)
124 cd03418 GRX_GRXb_1_3_like Glut 74.2 19 0.00042 23.8 6.3 49 123-173 8-58 (75)
125 PRK05867 short chain dehydroge 73.9 31 0.00067 27.7 8.5 44 112-161 8-51 (253)
126 cd04795 SIS SIS domain. SIS (S 73.9 24 0.00052 23.7 7.0 32 141-172 48-79 (87)
127 PRK10310 PTS system galactitol 73.7 22 0.00048 26.3 7.0 60 111-179 1-62 (94)
128 cd06302 PBP1_LsrB_Quorum_Sensi 73.5 29 0.00063 28.8 8.4 59 115-175 2-64 (298)
129 cd06308 PBP1_sensor_kinase_lik 73.3 34 0.00073 27.3 8.5 59 115-175 2-64 (270)
130 cd06320 PBP1_allose_binding Pe 73.3 27 0.00059 27.9 7.9 60 115-174 2-64 (275)
131 cd06310 PBP1_ABC_sugar_binding 72.7 26 0.00056 27.9 7.7 59 114-174 1-64 (273)
132 cd08196 DHQS-like1 Dehydroquin 72.3 18 0.0004 32.6 7.5 63 113-179 20-88 (346)
133 PF02882 THF_DHG_CYH_C: Tetrah 72.3 5.7 0.00012 32.6 3.9 59 114-183 37-95 (160)
134 cd06315 PBP1_ABC_sugar_binding 72.0 36 0.00078 27.8 8.5 60 114-175 2-64 (280)
135 COG0371 GldA Glycerol dehydrog 71.4 13 0.00028 34.6 6.4 66 113-179 31-96 (360)
136 cd03522 MoeA_like MoeA_like. T 71.4 23 0.0005 32.0 7.9 67 111-179 158-231 (312)
137 cd06386 PBP1_NPR_C_like Ligand 71.4 7.1 0.00015 34.3 4.6 61 113-176 138-203 (387)
138 PF00462 Glutaredoxin: Glutare 71.3 14 0.00031 23.9 5.0 48 123-172 7-55 (60)
139 PF05036 SPOR: Sporulation rel 71.0 26 0.00056 23.0 6.3 59 114-172 4-74 (76)
140 PF06258 Mito_fiss_Elm1: Mitoc 70.9 17 0.00037 32.4 6.9 58 111-170 145-211 (311)
141 cd01575 PBP1_GntR Ligand-bindi 70.9 42 0.0009 26.4 8.4 59 115-175 2-63 (268)
142 cd06281 PBP1_LacI_like_5 Ligan 70.7 35 0.00076 27.2 8.0 60 115-176 2-64 (269)
143 PRK14040 oxaloacetate decarbox 70.7 26 0.00055 34.4 8.5 102 79-181 58-181 (593)
144 cd06270 PBP1_GalS_like Ligand 70.6 39 0.00084 26.9 8.2 59 115-175 2-63 (268)
145 cd01536 PBP1_ABC_sugar_binding 70.2 47 0.001 25.8 8.4 60 115-176 2-64 (267)
146 PRK00394 transcription factor; 70.2 9.9 0.00022 31.7 5.0 87 74-162 5-115 (179)
147 PRK09526 lacI lac repressor; R 70.1 12 0.00025 31.3 5.4 87 85-174 35-127 (342)
148 PRK12331 oxaloacetate decarbox 70.0 38 0.00082 32.0 9.3 109 72-181 50-180 (448)
149 TIGR02405 trehalos_R_Ecol treh 69.9 14 0.00029 30.8 5.7 87 85-174 31-122 (311)
150 PRK12330 oxaloacetate decarbox 69.8 30 0.00066 33.4 8.7 109 72-181 51-181 (499)
151 TIGR02955 TMAO_TorT TMAO reduc 69.7 32 0.00069 28.5 7.8 59 115-175 2-65 (295)
152 PF13685 Fe-ADH_2: Iron-contai 69.7 8.1 0.00018 33.7 4.5 66 113-178 20-86 (250)
153 PRK14177 bifunctional 5,10-met 69.4 7.3 0.00016 35.0 4.3 35 143-182 183-217 (284)
154 PRK05447 1-deoxy-D-xylulose 5- 69.1 20 0.00043 33.6 7.2 46 114-162 3-48 (385)
155 TIGR03405 Phn_Fe-ADH phosphona 69.0 15 0.00033 32.7 6.2 63 113-179 24-92 (355)
156 TIGR00236 wecB UDP-N-acetylglu 68.8 23 0.00051 30.3 7.1 38 114-151 2-40 (365)
157 cd00861 ProRS_anticodon_short 68.5 15 0.00033 25.4 4.9 57 114-175 3-62 (94)
158 TIGR01108 oadA oxaloacetate de 68.0 44 0.00094 32.7 9.5 109 72-181 45-175 (582)
159 PRK11041 DNA-binding transcrip 67.9 31 0.00067 28.2 7.3 76 97-174 18-98 (309)
160 cd04518 TBP_archaea archaeal T 67.8 9.1 0.0002 31.8 4.3 87 74-162 6-116 (174)
161 cd06317 PBP1_ABC_sugar_binding 67.6 53 0.0012 25.9 8.4 45 129-175 20-64 (275)
162 cd06299 PBP1_LacI_like_13 Liga 67.1 56 0.0012 25.8 8.4 58 115-174 2-62 (265)
163 PRK14168 bifunctional 5,10-met 66.9 8.7 0.00019 34.7 4.3 34 144-182 190-223 (297)
164 cd06282 PBP1_GntR_like_2 Ligan 66.9 59 0.0013 25.5 8.5 43 129-173 19-61 (266)
165 cd06322 PBP1_ABC_sugar_binding 66.6 50 0.0011 26.1 8.1 44 128-173 18-61 (267)
166 cd06303 PBP1_LuxPQ_Quorum_Sens 66.4 49 0.0011 26.9 8.2 63 114-176 1-69 (280)
167 cd06353 PBP1_BmpA_Med_like Per 66.3 45 0.00097 28.1 8.2 57 117-175 5-65 (258)
168 COG2101 SPT15 TATA-box binding 66.2 8.6 0.00019 33.2 3.9 69 73-142 11-93 (185)
169 PF03129 HGTP_anticodon: Antic 66.2 25 0.00054 24.5 5.7 55 115-174 2-59 (94)
170 PRK14187 bifunctional 5,10-met 66.0 8.9 0.00019 34.6 4.1 35 143-182 184-218 (294)
171 KOG1208 Dehydrogenases with di 65.9 17 0.00038 32.5 6.0 50 110-165 32-81 (314)
172 PRK14041 oxaloacetate decarbox 65.4 35 0.00075 32.6 8.1 108 73-181 50-179 (467)
173 PLN02958 diacylglycerol kinase 65.2 32 0.0007 32.5 7.8 60 114-176 113-177 (481)
174 cd06291 PBP1_Qymf_like Ligand 65.0 61 0.0013 25.6 8.3 59 115-175 2-63 (265)
175 TIGR03217 4OH_2_O_val_ald 4-hy 64.6 39 0.00085 30.4 7.9 56 115-171 104-160 (333)
176 cd06354 PBP1_BmpA_PnrA_like Pe 64.2 52 0.0011 26.8 8.0 58 114-174 1-64 (265)
177 cd07944 DRE_TIM_HOA_like 4-hyd 64.2 39 0.00086 29.2 7.6 52 120-171 103-155 (266)
178 cd07937 DRE_TIM_PC_TC_5S Pyruv 64.0 39 0.00083 29.3 7.5 63 114-177 106-171 (275)
179 cd00652 TBP_TLF TATA box bindi 63.9 17 0.00037 30.0 5.1 67 74-142 6-87 (174)
180 TIGR02181 GRX_bact Glutaredoxi 63.9 34 0.00073 23.2 5.9 49 122-172 6-55 (79)
181 PLN02616 tetrahydrofolate dehy 63.9 9.6 0.00021 35.6 4.1 51 127-182 214-289 (364)
182 PF02006 DUF137: Protein of un 63.9 27 0.00059 30.1 6.4 55 128-184 20-75 (178)
183 cd00858 GlyRS_anticodon GlyRS 63.8 28 0.0006 26.2 5.9 56 114-175 28-85 (121)
184 cd06274 PBP1_FruR Ligand bindi 63.7 69 0.0015 25.4 8.4 60 115-176 2-64 (264)
185 PRK14180 bifunctional 5,10-met 63.6 10 0.00022 34.0 4.0 47 127-182 170-216 (282)
186 PF00352 TBP: Transcription fa 63.5 10 0.00022 27.4 3.4 64 74-139 8-86 (86)
187 PRK01045 ispH 4-hydroxy-3-meth 63.3 28 0.0006 31.5 6.7 77 73-151 214-294 (298)
188 cd07025 Peptidase_S66 LD-Carbo 62.7 27 0.00059 30.3 6.4 66 115-180 1-75 (282)
189 cd06267 PBP1_LacI_sugar_bindin 62.7 68 0.0015 24.6 8.4 63 115-179 2-67 (264)
190 PRK07109 short chain dehydroge 62.6 68 0.0015 27.9 8.8 43 113-161 8-50 (334)
191 cd00738 HGTP_anticodon HGTP an 61.5 35 0.00077 23.2 5.7 57 114-175 3-62 (94)
192 PRK14021 bifunctional shikimat 61.4 41 0.00088 32.1 7.8 64 114-178 211-280 (542)
193 PF06506 PrpR_N: Propionate ca 61.3 14 0.00031 29.6 4.1 59 111-176 76-134 (176)
194 cd06312 PBP1_ABC_sugar_binding 60.9 72 0.0016 25.6 8.1 17 124-140 42-58 (271)
195 cd08198 DHQS-like2 Dehydroquin 60.8 40 0.00087 31.1 7.4 67 113-179 31-111 (369)
196 PF01522 Polysacc_deac_1: Poly 60.8 27 0.00058 25.0 5.1 55 114-170 6-60 (123)
197 PF02016 Peptidase_S66: LD-car 60.8 35 0.00076 29.8 6.8 66 115-180 1-75 (284)
198 TIGR03568 NeuC_NnaA UDP-N-acet 60.7 29 0.00064 30.9 6.4 41 114-154 2-43 (365)
199 KOG3857 Alcohol dehydrogenase, 60.6 20 0.00043 34.5 5.5 68 113-180 71-140 (465)
200 cd00293 USP_Like Usp: Universa 60.5 51 0.0011 22.4 6.8 41 138-182 68-108 (130)
201 cd06278 PBP1_LacI_like_2 Ligan 60.4 81 0.0017 24.7 8.4 58 115-175 2-62 (266)
202 PRK14182 bifunctional 5,10-met 60.4 13 0.00029 33.4 4.2 46 127-181 169-214 (282)
203 PRK00394 transcription factor; 60.2 13 0.00028 31.0 3.9 66 73-140 95-177 (179)
204 smart00854 PGA_cap Bacterial c 60.0 18 0.0004 30.0 4.7 47 124-173 158-211 (239)
205 cd06324 PBP1_ABC_sugar_binding 59.9 72 0.0016 26.5 8.2 42 130-173 21-64 (305)
206 PRK13057 putative lipid kinase 59.6 37 0.0008 28.9 6.6 47 126-176 13-59 (287)
207 PLN00062 TATA-box-binding prot 59.4 14 0.00031 30.9 3.9 85 74-160 6-113 (179)
208 cd05008 SIS_GlmS_GlmD_1 SIS (S 59.4 66 0.0014 23.3 8.2 59 117-175 3-81 (126)
209 PLN02274 inosine-5'-monophosph 59.3 46 0.001 31.8 7.8 84 72-175 54-138 (505)
210 PRK14186 bifunctional 5,10-met 59.2 14 0.0003 33.4 4.1 47 127-182 170-216 (297)
211 TIGR03590 PseG pseudaminic aci 59.2 29 0.00063 29.7 5.9 34 113-147 171-205 (279)
212 PRK09739 hypothetical protein; 59.0 77 0.0017 25.6 8.0 59 113-175 4-87 (199)
213 cd00578 L-fuc_L-ara-isomerases 59.0 40 0.00088 30.8 7.1 60 113-174 1-70 (452)
214 cd06306 PBP1_TorT-like TorT-li 59.0 64 0.0014 26.1 7.6 9 163-171 77-85 (268)
215 PRK13394 3-hydroxybutyrate deh 58.8 90 0.002 24.8 8.3 26 113-140 7-32 (262)
216 smart00642 Aamy Alpha-amylase 58.8 43 0.00092 27.0 6.5 49 123-172 16-88 (166)
217 cd03031 GRX_GRX_like Glutaredo 58.7 37 0.00081 27.5 6.1 38 122-161 13-50 (147)
218 TIGR02667 moaB_proteo molybden 58.5 73 0.0016 25.7 7.8 66 112-178 4-74 (163)
219 PF00682 HMGL-like: HMGL-like 58.4 37 0.00081 27.8 6.2 59 114-172 82-155 (237)
220 cd05014 SIS_Kpsf KpsF-like pro 58.3 69 0.0015 23.3 8.4 39 143-181 50-88 (128)
221 PF04028 DUF374: Domain of unk 58.1 45 0.00098 24.3 5.9 58 114-176 11-68 (74)
222 cd01989 STK_N The N-terminal d 57.8 62 0.0013 23.7 6.8 49 129-180 68-116 (146)
223 PRK07063 short chain dehydroge 57.7 98 0.0021 24.9 8.4 43 112-160 6-48 (260)
224 PRK13059 putative lipid kinase 57.5 31 0.00068 29.7 5.8 54 119-176 12-65 (295)
225 PRK10355 xylF D-xylose transpo 57.2 70 0.0015 27.6 7.9 63 112-176 25-90 (330)
226 PRK12361 hypothetical protein; 57.1 28 0.0006 32.8 5.9 60 113-176 243-306 (547)
227 PLN02516 methylenetetrahydrofo 57.0 15 0.00033 33.2 4.0 46 127-181 179-224 (299)
228 PRK08085 gluconate 5-dehydroge 56.9 1E+02 0.0022 24.7 8.5 43 112-160 8-50 (254)
229 TIGR02194 GlrX_NrdH Glutaredox 56.8 58 0.0013 22.0 6.3 41 118-161 3-43 (72)
230 PRK10329 glutaredoxin-like pro 56.6 70 0.0015 22.8 6.7 41 118-161 5-45 (81)
231 PRK14177 bifunctional 5,10-met 56.5 36 0.00079 30.6 6.3 52 114-165 36-88 (284)
232 PRK13761 hypothetical protein; 56.5 38 0.00083 30.5 6.3 100 76-184 33-136 (248)
233 cd07381 MPP_CapA CapA and rela 56.3 29 0.00063 28.6 5.3 52 125-182 161-219 (239)
234 COG3660 Predicted nucleoside-d 56.3 38 0.00083 31.5 6.4 78 73-162 132-218 (329)
235 PRK14172 bifunctional 5,10-met 56.3 17 0.00037 32.5 4.2 47 127-182 170-216 (278)
236 PRK14190 bifunctional 5,10-met 56.3 38 0.00082 30.4 6.3 52 114-165 35-87 (284)
237 PF00781 DAGK_cat: Diacylglyce 56.1 82 0.0018 23.5 7.3 46 128-176 17-63 (130)
238 cd03059 GST_N_SspA GST_N famil 55.7 26 0.00057 22.9 4.1 32 124-155 8-39 (73)
239 PF10137 TIR-like: Predicted n 55.7 63 0.0014 25.6 6.8 58 115-174 2-59 (125)
240 PRK06940 short chain dehydroge 55.6 59 0.0013 27.0 7.0 19 114-135 3-21 (275)
241 PRK14170 bifunctional 5,10-met 55.3 19 0.0004 32.5 4.2 47 127-182 169-215 (284)
242 cd06368 PBP1_iGluR_non_NMDA_li 55.2 69 0.0015 26.5 7.3 61 113-175 128-188 (324)
243 PRK01966 ddl D-alanyl-alanine 54.4 21 0.00046 31.2 4.4 32 111-142 2-38 (333)
244 PRK09701 D-allose transporter 54.4 1.2E+02 0.0025 25.6 8.7 65 112-176 24-91 (311)
245 cd07948 DRE_TIM_HCS Saccharomy 54.4 86 0.0019 27.2 8.1 47 125-171 111-158 (262)
246 cd01653 GATase1 Type 1 glutami 54.2 44 0.00096 21.4 4.9 37 115-153 1-37 (115)
247 PRK14186 bifunctional 5,10-met 53.9 43 0.00094 30.3 6.3 52 114-165 35-87 (297)
248 TIGR02180 GRX_euk Glutaredoxin 53.9 42 0.00091 22.3 4.9 42 121-162 5-48 (84)
249 PRK14166 bifunctional 5,10-met 53.3 21 0.00045 32.1 4.2 47 127-182 169-215 (282)
250 cd06592 GH31_glucosidase_KIAA1 53.3 50 0.0011 28.8 6.5 53 122-175 26-91 (303)
251 cd06316 PBP1_ABC_sugar_binding 53.2 85 0.0018 25.6 7.5 57 115-173 2-62 (294)
252 PF11965 DUF3479: Domain of un 53.2 47 0.001 27.7 6.0 58 114-173 2-63 (164)
253 cd06602 GH31_MGAM_SI_GAA This 53.1 60 0.0013 29.0 7.0 51 124-174 22-86 (339)
254 TIGR00677 fadh2_euk methylenet 52.9 79 0.0017 27.8 7.7 64 115-178 33-98 (281)
255 cd06301 PBP1_rhizopine_binding 52.7 78 0.0017 25.1 7.0 50 120-172 37-86 (272)
256 COG2101 SPT15 TATA-box binding 52.4 27 0.00059 30.2 4.6 67 73-140 102-184 (185)
257 PF13727 CoA_binding_3: CoA-bi 52.4 36 0.00078 25.4 4.8 44 129-173 131-174 (175)
258 PRK12757 cell division protein 52.2 93 0.002 27.9 8.0 64 114-177 184-256 (256)
259 PF10662 PduV-EutP: Ethanolami 52.2 53 0.0012 26.7 6.1 50 111-161 89-142 (143)
260 TIGR00676 fadh2 5,10-methylene 52.1 72 0.0016 27.6 7.2 52 127-178 46-97 (272)
261 PRK14169 bifunctional 5,10-met 51.4 23 0.00049 31.9 4.1 47 127-182 168-214 (282)
262 cd06350 PBP1_GPCR_family_C_lik 51.3 1.3E+02 0.0027 25.1 8.3 63 113-176 161-226 (348)
263 PRK14190 bifunctional 5,10-met 51.2 24 0.00053 31.6 4.3 47 127-182 170-216 (284)
264 PRK08277 D-mannonate oxidoredu 51.2 1.3E+02 0.0029 24.5 8.3 27 112-140 9-35 (278)
265 PRK14188 bifunctional 5,10-met 51.1 58 0.0012 29.3 6.6 52 114-165 35-87 (296)
266 PF09587 PGA_cap: Bacterial ca 51.1 46 0.001 27.8 5.7 45 129-173 171-222 (250)
267 cd02810 DHOD_DHPD_FMN Dihydroo 51.0 1.1E+02 0.0023 26.0 8.0 51 125-176 147-198 (289)
268 PRK10569 NAD(P)H-dependent FMN 50.8 1.4E+02 0.0031 24.6 8.6 57 114-174 2-73 (191)
269 PRK14192 bifunctional 5,10-met 50.7 88 0.0019 27.7 7.7 53 114-166 36-89 (283)
270 PF03853 YjeF_N: YjeF-related 50.3 1.2E+02 0.0026 24.3 7.8 61 111-171 24-85 (169)
271 PRK14174 bifunctional 5,10-met 50.2 56 0.0012 29.5 6.4 52 114-165 34-86 (295)
272 PF02670 DXP_reductoisom: 1-de 50.1 47 0.001 26.6 5.3 44 118-163 3-46 (129)
273 TIGR02495 NrdG2 anaerobic ribo 49.9 65 0.0014 25.3 6.1 51 118-168 131-184 (191)
274 PRK06139 short chain dehydroge 49.8 1E+02 0.0022 27.1 7.8 28 151-178 66-95 (330)
275 PRK14173 bifunctional 5,10-met 49.8 57 0.0012 29.4 6.4 52 114-165 32-84 (287)
276 PRK06455 riboflavin synthase; 49.8 1.1E+02 0.0023 25.7 7.6 59 113-174 2-63 (155)
277 cd04518 TBP_archaea archaeal T 49.7 21 0.00045 29.7 3.4 55 73-129 96-162 (174)
278 COG0381 WecB UDP-N-acetylgluco 49.6 46 0.00099 31.5 6.0 52 113-164 4-56 (383)
279 PRK05876 short chain dehydroge 49.6 1.2E+02 0.0025 25.3 7.9 26 112-139 5-30 (275)
280 cd03045 GST_N_Delta_Epsilon GS 49.4 31 0.00068 22.6 3.7 36 126-161 10-45 (74)
281 PRK00061 ribH 6,7-dimethyl-8-r 49.4 48 0.001 27.2 5.4 61 112-175 12-79 (154)
282 PRK14453 chloramphenicol/florf 49.3 86 0.0019 28.6 7.5 62 114-175 252-327 (347)
283 cd06380 PBP1_iGluR_AMPA N-term 49.0 1.1E+02 0.0024 26.3 7.8 61 113-174 127-190 (382)
284 PRK14180 bifunctional 5,10-met 49.0 59 0.0013 29.3 6.3 52 114-165 34-86 (282)
285 PRK14171 bifunctional 5,10-met 49.0 26 0.00057 31.6 4.2 47 127-182 171-217 (288)
286 COG0269 SgbH 3-hexulose-6-phos 48.8 1.4E+02 0.003 26.4 8.4 103 65-177 29-140 (217)
287 PRK07478 short chain dehydroge 48.8 1.4E+02 0.003 23.9 8.3 27 152-178 66-94 (254)
288 PF00128 Alpha-amylase: Alpha 48.8 44 0.00095 26.8 5.0 51 124-174 2-72 (316)
289 PRK14184 bifunctional 5,10-met 48.7 29 0.00064 31.2 4.4 33 144-181 186-218 (286)
290 cd03419 GRX_GRXh_1_2_like Glut 48.7 78 0.0017 21.1 5.6 40 122-161 7-46 (82)
291 TIGR01884 cas_HTH CRISPR locus 48.7 1.4E+02 0.003 24.4 8.1 65 113-178 26-98 (203)
292 PRK14173 bifunctional 5,10-met 48.5 27 0.00058 31.5 4.2 47 127-182 167-213 (287)
293 PRK14169 bifunctional 5,10-met 48.5 64 0.0014 29.0 6.5 52 114-165 33-85 (282)
294 KOG2835 Phosphoribosylamidoimi 48.4 25 0.00055 33.2 4.1 57 126-184 250-307 (373)
295 cd06594 GH31_glucosidase_YihQ 48.4 79 0.0017 28.0 7.0 50 124-174 21-91 (317)
296 COG4026 Uncharacterized protei 48.3 89 0.0019 28.5 7.3 57 113-173 7-64 (290)
297 cd03060 GST_N_Omega_like GST_N 48.3 44 0.00096 22.2 4.3 32 124-155 8-39 (71)
298 cd06371 PBP1_sensory_GC_DEF_li 48.3 1.3E+02 0.0027 26.5 8.2 62 113-175 133-196 (382)
299 TIGR02189 GlrX-like_plant Glut 48.2 95 0.0021 22.9 6.4 37 114-152 9-45 (99)
300 cd07062 Peptidase_S66_mccF_lik 48.1 85 0.0018 27.6 7.1 66 114-179 2-78 (308)
301 PRK09432 metF 5,10-methylenete 48.1 73 0.0016 28.3 6.8 50 128-177 71-120 (296)
302 COG0431 Predicted flavoprotein 48.0 95 0.0021 25.2 6.9 69 113-183 1-84 (184)
303 PRK14172 bifunctional 5,10-met 48.0 62 0.0013 29.0 6.3 52 114-165 35-87 (278)
304 COG1879 RbsB ABC-type sugar tr 48.0 1E+02 0.0022 25.9 7.3 70 113-182 34-106 (322)
305 PRK14171 bifunctional 5,10-met 47.9 70 0.0015 28.9 6.7 52 114-165 35-87 (288)
306 cd06347 PBP1_ABC_ligand_bindin 47.9 1.3E+02 0.0027 24.8 7.7 65 112-177 135-201 (334)
307 PLN02897 tetrahydrofolate dehy 47.8 25 0.00055 32.6 4.0 51 127-182 197-272 (345)
308 PRK06200 2,3-dihydroxy-2,3-dih 47.8 99 0.0021 25.0 7.0 61 112-178 5-91 (263)
309 PRK14191 bifunctional 5,10-met 47.8 61 0.0013 29.2 6.3 52 114-165 34-86 (285)
310 PRK10824 glutaredoxin-4; Provi 47.5 1.3E+02 0.0027 23.6 7.3 57 114-173 16-77 (115)
311 PRK14183 bifunctional 5,10-met 47.5 34 0.00074 30.8 4.6 47 127-182 169-215 (281)
312 cd03132 GATase1_catalase Type 47.4 68 0.0015 24.1 5.6 39 113-153 2-40 (142)
313 cd06597 GH31_transferase_CtsY 47.4 95 0.0021 27.8 7.4 50 122-172 20-103 (340)
314 cd06313 PBP1_ABC_sugar_binding 47.3 87 0.0019 25.4 6.6 53 118-173 34-86 (272)
315 PRK14189 bifunctional 5,10-met 47.2 26 0.00057 31.4 3.9 57 114-182 160-216 (285)
316 PRK08643 acetoin reductase; Va 46.9 1.4E+02 0.003 23.9 7.6 25 153-177 63-89 (256)
317 PLN02204 diacylglycerol kinase 46.9 63 0.0014 32.2 6.7 55 119-176 170-227 (601)
318 TIGR02634 xylF D-xylose ABC tr 46.8 1E+02 0.0023 25.8 7.2 32 143-174 30-61 (302)
319 TIGR02109 PQQ_syn_pqqE coenzym 46.8 66 0.0014 28.1 6.2 52 119-170 125-176 (358)
320 PRK01231 ppnK inorganic polyph 46.7 28 0.00061 30.9 3.9 33 113-145 5-39 (295)
321 PRK14181 bifunctional 5,10-met 46.7 66 0.0014 29.1 6.3 52 114-165 29-81 (287)
322 cd06304 PBP1_BmpA_like Peripla 46.7 1E+02 0.0022 24.9 6.8 43 129-174 21-63 (260)
323 cd04740 DHOD_1B_like Dihydroor 46.6 1.2E+02 0.0026 25.9 7.6 48 124-174 138-186 (296)
324 PRK14193 bifunctional 5,10-met 46.5 69 0.0015 28.9 6.4 52 114-165 35-87 (284)
325 PF01866 Diphthamide_syn: Puta 46.5 39 0.00084 29.8 4.8 56 113-175 210-268 (307)
326 cd00537 MTHFR Methylenetetrahy 46.3 93 0.002 26.5 6.9 53 126-178 45-97 (274)
327 PRK08265 short chain dehydroge 46.2 1.2E+02 0.0025 24.7 7.2 41 112-158 5-45 (261)
328 PRK08177 short chain dehydroge 46.1 1.5E+02 0.0032 23.4 8.0 26 153-178 57-82 (225)
329 cd06379 PBP1_iGluR_NMDA_NR1 N- 46.0 1.3E+02 0.0029 25.9 7.9 63 113-176 155-222 (377)
330 TIGR01205 D_ala_D_alaTIGR D-al 45.9 24 0.00052 29.8 3.3 60 114-175 1-71 (315)
331 cd07939 DRE_TIM_NifV Streptomy 45.9 1.4E+02 0.0029 25.4 7.8 102 65-171 34-156 (259)
332 cd04509 PBP1_ABC_transporter_G 45.9 1.1E+02 0.0024 23.8 6.7 37 139-175 38-75 (299)
333 PRK14185 bifunctional 5,10-met 45.8 30 0.00064 31.3 4.0 51 127-182 169-219 (293)
334 PRK11253 ldcA L,D-carboxypepti 45.7 1.1E+02 0.0023 27.3 7.4 62 114-179 3-78 (305)
335 PRK14175 bifunctional 5,10-met 45.7 67 0.0014 28.9 6.2 52 114-165 35-87 (286)
336 PRK05096 guanosine 5'-monophos 45.6 1.3E+02 0.0028 28.3 8.2 97 72-171 46-153 (346)
337 COG4002 Predicted phosphotrans 45.5 62 0.0013 29.2 5.8 57 112-181 137-205 (256)
338 PRK07097 gluconate 5-dehydroge 45.4 1.6E+02 0.0035 23.9 7.9 25 113-139 10-34 (265)
339 cd00758 MoCF_BD MoCF_BD: molyb 45.4 73 0.0016 24.3 5.6 48 129-178 22-69 (133)
340 cd03110 Fer4_NifH_child This p 45.0 1.4E+02 0.0031 23.0 7.9 58 114-171 118-175 (179)
341 PRK14166 bifunctional 5,10-met 44.9 76 0.0017 28.5 6.4 52 114-165 33-85 (282)
342 PRK14189 bifunctional 5,10-met 44.9 82 0.0018 28.4 6.6 52 114-165 35-87 (285)
343 PRK09282 pyruvate carboxylase 44.8 1.9E+02 0.0041 28.4 9.5 100 81-181 59-180 (592)
344 PLN02516 methylenetetrahydrofo 44.8 83 0.0018 28.6 6.7 52 114-165 42-94 (299)
345 cd04336 YeaK YeaK is an unchar 44.8 39 0.00085 26.0 4.1 44 129-172 2-45 (153)
346 PF02401 LYTB: LytB protein; 44.7 52 0.0011 29.5 5.3 64 74-138 214-281 (281)
347 PRK14179 bifunctional 5,10-met 44.7 81 0.0018 28.4 6.6 52 114-165 35-87 (284)
348 PRK10792 bifunctional 5,10-met 44.6 29 0.00064 31.2 3.8 47 127-182 171-217 (285)
349 cd06319 PBP1_ABC_sugar_binding 44.6 1.6E+02 0.0034 23.4 8.1 11 161-171 74-84 (277)
350 cd03036 ArsC_like Arsenate Red 44.6 53 0.0012 24.6 4.7 38 125-162 9-47 (111)
351 PRK01060 endonuclease IV; Prov 44.5 1.3E+02 0.0027 25.1 7.3 54 114-170 3-63 (281)
352 cd06388 PBP1_iGluR_AMPA_GluR4 44.5 1.3E+02 0.0028 26.8 7.7 59 113-173 125-184 (371)
353 PRK14167 bifunctional 5,10-met 44.5 66 0.0014 29.1 6.0 52 114-165 34-86 (297)
354 PRK07074 short chain dehydroge 44.5 1.5E+02 0.0032 23.7 7.4 24 114-139 3-26 (257)
355 cd06285 PBP1_LacI_like_7 Ligan 44.4 1.6E+02 0.0034 23.3 8.5 44 128-173 18-61 (265)
356 cd02940 DHPD_FMN Dihydropyrimi 44.3 1.1E+02 0.0024 26.6 7.2 52 112-164 100-164 (299)
357 PRK07453 protochlorophyllide o 44.3 2E+02 0.0043 24.4 8.5 26 153-178 67-94 (322)
358 PRK14176 bifunctional 5,10-met 44.2 90 0.002 28.2 6.8 52 114-165 41-93 (287)
359 COG1570 XseA Exonuclease VII, 44.1 3.1E+02 0.0067 26.6 11.7 123 42-177 71-203 (440)
360 PRK05854 short chain dehydroge 44.0 1.3E+02 0.0028 25.7 7.5 43 111-159 12-54 (313)
361 PRK08213 gluconate 5-dehydroge 44.0 1.5E+02 0.0033 23.7 7.5 39 113-157 12-50 (259)
362 cd02810 DHOD_DHPD_FMN Dihydroo 43.9 1.8E+02 0.004 24.5 8.3 62 112-175 99-170 (289)
363 cd06277 PBP1_LacI_like_1 Ligan 43.7 1.6E+02 0.0036 23.3 8.3 48 126-175 19-66 (268)
364 PRK14467 ribosomal RNA large s 43.6 1.4E+02 0.0031 27.3 8.0 60 114-173 256-324 (348)
365 cd02977 ArsC_family Arsenate R 43.5 64 0.0014 23.4 4.8 41 123-163 7-48 (105)
366 PHA03050 glutaredoxin; Provisi 43.4 1.1E+02 0.0023 23.2 6.2 58 114-173 14-76 (108)
367 PRK12999 pyruvate carboxylase; 43.3 1.6E+02 0.0036 31.1 9.4 102 79-181 588-717 (1146)
368 PLN02897 tetrahydrofolate dehy 43.3 76 0.0016 29.6 6.3 52 114-165 89-141 (345)
369 PF13409 GST_N_2: Glutathione 43.2 56 0.0012 22.1 4.2 28 126-153 3-30 (70)
370 PRK13758 anaerobic sulfatase-m 43.0 78 0.0017 27.7 6.1 52 120-171 138-189 (370)
371 PLN02540 methylenetetrahydrofo 42.9 87 0.0019 30.9 6.9 52 127-178 46-97 (565)
372 cd03041 GST_N_2GST_N GST_N fam 42.8 79 0.0017 21.5 5.0 46 126-173 11-56 (77)
373 PRK12938 acetyacetyl-CoA reduc 42.5 1.7E+02 0.0037 23.1 8.3 29 151-179 63-93 (246)
374 cd04517 TLF TBP-like factors ( 42.5 92 0.002 25.8 6.1 86 74-161 7-115 (174)
375 PRK14569 D-alanyl-alanine synt 42.4 90 0.002 26.8 6.3 61 112-179 3-69 (296)
376 PRK09389 (R)-citramalate synth 42.2 1.5E+02 0.0033 28.2 8.3 58 115-172 89-161 (488)
377 TIGR02660 nifV_homocitr homoci 42.2 2.6E+02 0.0057 25.2 10.0 86 86-171 53-159 (365)
378 PRK05339 PEP synthetase regula 42.1 1.5E+02 0.0033 26.6 7.9 57 115-171 5-63 (269)
379 PRK10222 PTS system L-ascorbat 42.1 51 0.0011 24.1 4.1 39 129-178 5-45 (85)
380 cd03029 GRX_hybridPRX5 Glutare 42.0 66 0.0014 21.5 4.4 30 121-150 7-36 (72)
381 PRK06505 enoyl-(acyl carrier p 41.8 1.1E+02 0.0023 25.5 6.5 30 111-140 5-34 (271)
382 PF03808 Glyco_tran_WecB: Glyc 41.8 1.8E+02 0.0039 23.3 7.6 60 113-177 49-111 (172)
383 cd06604 GH31_glucosidase_II_Ma 41.8 1.2E+02 0.0025 26.9 7.0 49 123-172 21-82 (339)
384 cd06292 PBP1_LacI_like_10 Liga 41.7 1.4E+02 0.003 23.7 6.9 66 112-177 122-191 (273)
385 PRK14184 bifunctional 5,10-met 41.6 95 0.0021 28.0 6.5 52 114-165 34-86 (286)
386 PRK10792 bifunctional 5,10-met 41.6 86 0.0019 28.3 6.2 52 114-165 36-88 (285)
387 cd06284 PBP1_LacI_like_6 Ligan 41.3 1.7E+02 0.0037 22.9 8.6 44 128-173 18-61 (267)
388 PRK14168 bifunctional 5,10-met 41.2 88 0.0019 28.4 6.3 52 114-165 36-88 (297)
389 PRK14178 bifunctional 5,10-met 41.2 95 0.0021 27.9 6.4 52 114-165 29-81 (279)
390 TIGR01304 IMP_DH_rel_2 IMP deh 41.1 29 0.00063 32.1 3.3 25 73-97 45-69 (369)
391 PRK08303 short chain dehydroge 41.0 1.8E+02 0.0039 25.0 7.9 26 152-177 78-106 (305)
392 PF14528 LAGLIDADG_3: LAGLIDAD 40.9 37 0.0008 23.2 3.1 25 122-146 28-52 (77)
393 cd06595 GH31_xylosidase_XylS-l 40.6 1.3E+02 0.0028 26.2 7.0 50 124-174 23-94 (292)
394 cd01545 PBP1_SalR Ligand-bindi 40.6 1.8E+02 0.0039 22.9 8.7 14 127-140 44-57 (270)
395 PRK14194 bifunctional 5,10-met 40.3 1.1E+02 0.0023 27.8 6.7 52 114-165 36-88 (301)
396 cd06309 PBP1_YtfQ_like Peripla 40.3 1.9E+02 0.0041 23.1 8.0 53 119-174 35-87 (273)
397 cd06366 PBP1_GABAb_receptor Li 40.3 2.2E+02 0.0047 24.0 8.2 65 113-177 136-202 (350)
398 PRK05286 dihydroorotate dehydr 40.2 2.7E+02 0.0058 25.0 9.2 56 121-177 187-248 (344)
399 cd03030 GRX_SH3BGR Glutaredoxi 40.0 78 0.0017 23.6 4.9 43 119-163 10-52 (92)
400 TIGR02883 spore_cwlD N-acetylm 40.0 1E+02 0.0022 25.0 5.9 54 124-177 28-93 (189)
401 cd00652 TBP_TLF TATA box bindi 39.9 41 0.00089 27.7 3.7 61 73-135 96-169 (174)
402 TIGR00216 ispH_lytB (E)-4-hydr 39.9 89 0.0019 28.1 6.1 66 72-138 211-280 (280)
403 cd06314 PBP1_tmGBP Periplasmic 39.9 2E+02 0.0042 23.1 7.7 21 152-172 40-60 (271)
404 cd00570 GST_N_family Glutathio 39.9 81 0.0018 19.1 4.3 30 126-155 10-39 (71)
405 PRK07666 fabG 3-ketoacyl-(acyl 39.9 1.9E+02 0.0041 22.9 8.1 12 167-178 84-95 (239)
406 PRK14170 bifunctional 5,10-met 39.8 98 0.0021 27.9 6.3 51 114-164 34-85 (284)
407 PRK05301 pyrroloquinoline quin 39.7 1E+02 0.0022 27.2 6.4 53 119-171 134-186 (378)
408 COG1609 PurR Transcriptional r 39.7 1.2E+02 0.0027 26.5 6.9 88 85-175 30-122 (333)
409 PRK08339 short chain dehydroge 39.6 2.1E+02 0.0046 23.5 7.9 27 112-140 7-33 (263)
410 cd06591 GH31_xylosidase_XylS X 39.5 1.3E+02 0.0028 26.5 6.9 51 123-174 21-86 (319)
411 PRK06603 enoyl-(acyl carrier p 39.5 1.3E+02 0.0028 24.7 6.6 28 112-139 7-34 (260)
412 cd03129 GAT1_Peptidase_E_like 39.5 2.1E+02 0.0045 23.3 7.8 61 112-177 29-90 (210)
413 TIGR01616 nitro_assoc nitrogen 39.5 68 0.0015 25.2 4.7 38 125-162 11-49 (126)
414 TIGR01754 flav_RNR ribonucleot 39.3 1.7E+02 0.0037 22.2 8.7 65 114-178 2-92 (140)
415 PRK03708 ppnK inorganic polyph 39.1 38 0.00083 29.8 3.6 32 114-145 2-35 (277)
416 PRK01355 azoreductase; Reviewe 39.0 2.1E+02 0.0046 23.2 8.0 60 113-174 2-84 (199)
417 PRK13361 molybdenum cofactor b 38.9 1.4E+02 0.0031 26.2 7.1 50 122-171 136-187 (329)
418 cd06593 GH31_xylosidase_YicI Y 38.9 1.6E+02 0.0035 25.4 7.3 52 123-175 21-87 (308)
419 cd00381 IMPDH IMPDH: The catal 38.8 2.9E+02 0.0063 24.7 9.9 49 115-167 85-133 (325)
420 PRK02645 ppnK inorganic polyph 38.8 60 0.0013 28.8 4.8 60 114-176 5-66 (305)
421 PRK07062 short chain dehydroge 38.7 2.1E+02 0.0045 23.1 8.0 27 112-140 7-33 (265)
422 cd03032 ArsC_Spx Arsenate Redu 38.5 71 0.0015 23.9 4.5 40 123-162 8-48 (115)
423 TIGR01957 nuoB_fam NADH-quinon 38.4 36 0.00077 27.9 3.1 79 48-137 2-81 (145)
424 cd06601 GH31_lyase_GLase GLase 38.4 1.4E+02 0.0031 26.9 7.2 50 123-173 21-83 (332)
425 PRK14183 bifunctional 5,10-met 38.3 1.1E+02 0.0023 27.7 6.3 52 114-165 34-86 (281)
426 PRK14469 ribosomal RNA large s 38.3 1.9E+02 0.0041 25.9 7.9 56 116-173 257-320 (343)
427 PRK11858 aksA trans-homoaconit 38.1 1.6E+02 0.0034 26.9 7.4 57 115-171 91-162 (378)
428 PRK13600 putative ribosomal pr 38.1 62 0.0013 24.3 4.1 29 116-144 32-60 (84)
429 PRK14182 bifunctional 5,10-met 37.8 1.1E+02 0.0024 27.6 6.3 52 114-165 33-85 (282)
430 PRK15414 phosphomannomutase Cp 37.7 2.3E+02 0.005 26.2 8.5 65 112-178 170-248 (456)
431 cd03048 GST_N_Ure2p_like GST_N 37.7 81 0.0018 21.3 4.4 30 118-149 4-33 (81)
432 PF00106 adh_short: short chai 37.7 1.7E+02 0.0036 21.6 7.6 65 114-179 26-92 (167)
433 TIGR03470 HpnH hopanoid biosyn 37.6 2E+02 0.0042 25.4 7.8 52 120-171 143-195 (318)
434 cd06393 PBP1_iGluR_Kainate_Glu 37.6 1.8E+02 0.004 25.4 7.5 60 113-174 140-199 (384)
435 PF11495 Regulator_TrmB: Archa 37.4 1E+02 0.0022 25.7 5.8 52 123-176 7-58 (233)
436 cd03061 GST_N_CLIC GST_N famil 37.4 77 0.0017 23.7 4.5 38 123-160 20-57 (91)
437 cd03035 ArsC_Yffb Arsenate Red 37.4 94 0.002 23.3 5.0 37 125-161 9-46 (105)
438 PRK14187 bifunctional 5,10-met 37.2 1.3E+02 0.0028 27.3 6.7 52 114-165 35-87 (294)
439 cd03768 SR_ResInv Serine Recom 36.9 83 0.0018 22.9 4.6 53 120-175 37-92 (126)
440 PLN02404 6,7-dimethyl-8-ribity 36.6 1.5E+02 0.0032 24.2 6.4 59 113-174 8-73 (141)
441 COG0683 LivK ABC-type branched 36.5 1.2E+02 0.0025 26.7 6.2 60 114-174 149-210 (366)
442 PF13380 CoA_binding_2: CoA bi 36.5 79 0.0017 23.9 4.5 62 115-176 3-88 (116)
443 COG3340 PepE Peptidase E [Amin 36.5 75 0.0016 28.3 4.9 51 120-176 43-93 (224)
444 PRK06124 gluconate 5-dehydroge 36.4 2.2E+02 0.0048 22.7 8.1 25 113-139 11-35 (256)
445 PRK14191 bifunctional 5,10-met 36.4 74 0.0016 28.7 5.0 58 113-182 158-215 (285)
446 TIGR01383 not_thiJ DJ-1 family 36.3 91 0.002 24.0 4.9 37 114-150 1-37 (179)
447 TIGR03025 EPS_sugtrans exopoly 36.1 1.5E+02 0.0032 26.9 7.0 45 129-174 178-222 (445)
448 PRK10426 alpha-glucosidase; Pr 36.1 1.3E+02 0.0028 29.6 7.0 65 109-174 201-289 (635)
449 PRK07677 short chain dehydroge 36.0 1.9E+02 0.0041 23.2 6.9 27 152-178 61-89 (252)
450 PLN02495 oxidoreductase, actin 35.9 2.7E+02 0.0059 26.0 8.7 100 71-175 112-215 (385)
451 cd06364 PBP1_CaSR Ligand-bindi 35.6 2.4E+02 0.0053 26.3 8.4 63 113-176 188-253 (510)
452 cd03145 GAT1_cyanophycinase Ty 35.6 2.5E+02 0.0054 23.4 7.7 60 112-177 29-93 (217)
453 PRK08936 glucose-1-dehydrogena 35.6 2.4E+02 0.0051 22.8 7.4 26 113-140 7-32 (261)
454 cd01574 PBP1_LacI Ligand-bindi 35.5 2.2E+02 0.0047 22.4 8.4 47 126-174 16-63 (264)
455 PRK06196 oxidoreductase; Provi 35.5 2.3E+02 0.0049 24.0 7.6 61 112-178 25-110 (315)
456 cd06299 PBP1_LacI_like_13 Liga 35.4 1.6E+02 0.0035 23.1 6.3 65 113-177 117-185 (265)
457 COG1393 ArsC Arsenate reductas 35.4 95 0.0021 24.2 4.9 38 126-163 12-50 (117)
458 PRK13601 putative L7Ae-like ri 35.3 84 0.0018 23.3 4.4 32 115-147 26-57 (82)
459 PRK00170 azoreductase; Reviewe 35.3 2.2E+02 0.0048 22.4 7.9 33 113-145 2-41 (201)
460 COG2263 Predicted RNA methylas 35.1 85 0.0018 27.4 5.0 52 111-173 114-166 (198)
461 KOG1752 Glutaredoxin and relat 35.0 1.5E+02 0.0033 22.8 6.0 58 115-174 16-75 (104)
462 PF00532 Peripla_BP_1: Peripla 35.0 2.1E+02 0.0045 24.2 7.3 67 113-179 119-192 (279)
463 TIGR00442 hisS histidyl-tRNA s 34.9 1.1E+02 0.0024 27.1 5.9 59 113-176 323-381 (397)
464 PRK11175 universal stress prot 34.9 1.4E+02 0.0031 24.8 6.2 46 129-177 72-117 (305)
465 PRK13011 formyltetrahydrofolat 34.9 1.9E+02 0.0042 25.6 7.3 79 72-174 91-172 (286)
466 TIGR00048 radical SAM enzyme, 34.8 2E+02 0.0043 26.2 7.5 59 114-174 262-329 (355)
467 TIGR02666 moaA molybdenum cofa 34.8 3.1E+02 0.0066 23.9 9.1 53 118-170 131-185 (334)
468 PRK12360 4-hydroxy-3-methylbut 34.8 1.1E+02 0.0024 27.4 5.9 65 73-138 213-281 (281)
469 PRK14181 bifunctional 5,10-met 34.8 57 0.0012 29.5 4.0 61 114-182 155-215 (287)
470 TIGR03127 RuMP_HxlB 6-phospho 34.7 2.2E+02 0.0048 22.2 8.2 60 116-175 33-107 (179)
471 PRK10785 maltodextrin glucosid 34.7 1.3E+02 0.0028 29.1 6.7 51 124-174 177-246 (598)
472 PRK06947 glucose-1-dehydrogena 34.7 2.3E+02 0.0049 22.5 7.1 26 153-178 64-91 (248)
473 cd03135 GATase1_DJ-1 Type 1 gl 34.6 92 0.002 23.4 4.6 37 115-153 1-37 (163)
474 PLN02331 phosphoribosylglycina 34.5 2.9E+02 0.0063 23.5 8.8 81 73-174 2-85 (207)
475 cd07409 MPP_CD73_N CD73 ecto-5 34.4 1E+02 0.0022 26.5 5.4 45 126-174 169-213 (281)
476 TIGR02090 LEU1_arch isopropylm 34.4 2.6E+02 0.0056 25.3 8.2 46 126-171 112-158 (363)
477 PF09002 DUF1887: Domain of un 34.3 1.8E+02 0.0039 26.6 7.2 67 111-178 25-95 (381)
478 cd04912 ACT_AKiii-LysC-EC-like 34.3 95 0.0021 21.4 4.3 35 115-149 4-39 (75)
479 KOG1478 3-keto sterol reductas 34.3 1.3E+02 0.0027 28.3 6.2 53 111-164 1-53 (341)
480 PRK03692 putative UDP-N-acetyl 34.3 2.1E+02 0.0047 24.8 7.4 60 114-177 107-167 (243)
481 PF13458 Peripla_BP_6: Peripla 34.1 2.2E+02 0.0049 23.4 7.2 107 69-177 90-200 (343)
482 TIGR02200 GlrX_actino Glutared 34.1 1.3E+02 0.0029 19.4 5.6 49 123-173 8-57 (77)
483 PRK14457 ribosomal RNA large s 34.1 2.4E+02 0.0051 25.8 7.9 59 114-174 259-326 (345)
484 TIGR02873 spore_ylxY probable 34.1 2.5E+02 0.0054 24.6 7.8 54 112-169 84-139 (268)
485 PLN02780 ketoreductase/ oxidor 34.0 1.8E+02 0.0039 25.3 6.9 26 113-140 53-78 (320)
486 TIGR00114 lumazine-synth 6,7-d 33.9 1.2E+02 0.0027 24.4 5.5 59 114-175 2-67 (138)
487 TIGR00177 molyb_syn molybdenum 33.8 1.6E+02 0.0034 22.9 5.9 47 130-178 31-77 (144)
488 PRK14194 bifunctional 5,10-met 33.7 64 0.0014 29.3 4.2 35 144-183 184-218 (301)
489 PRK14455 ribosomal RNA large s 33.6 2.1E+02 0.0046 26.1 7.5 58 116-175 268-334 (356)
490 TIGR01515 branching_enzym alph 33.6 94 0.002 30.1 5.5 49 126-174 157-226 (613)
491 PLN02530 histidine-tRNA ligase 33.5 1.3E+02 0.0029 28.2 6.4 56 114-174 403-458 (487)
492 PRK00286 xseA exodeoxyribonucl 33.5 3.5E+02 0.0077 24.7 9.0 95 81-178 104-203 (438)
493 cd01987 USP_OKCHK USP domain i 33.4 1.5E+02 0.0033 21.0 5.4 48 127-179 50-97 (124)
494 cd06603 GH31_GANC_GANAB_alpha 33.4 1.7E+02 0.0036 26.0 6.7 51 123-174 21-84 (339)
495 PRK14176 bifunctional 5,10-met 33.4 65 0.0014 29.1 4.2 46 127-181 176-221 (287)
496 cd06385 PBP1_NPR_A Ligand-bind 33.3 1.8E+02 0.0039 25.4 6.8 60 114-175 145-210 (405)
497 smart00852 MoCF_biosynth Proba 33.3 1.7E+02 0.0037 22.1 6.0 46 130-178 22-68 (135)
498 cd06338 PBP1_ABC_ligand_bindin 33.3 2.9E+02 0.0062 23.1 7.8 64 112-176 141-205 (345)
499 TIGR01037 pyrD_sub1_fam dihydr 33.2 3.1E+02 0.0068 23.5 9.5 50 123-175 140-190 (300)
500 PF00885 DMRL_synthase: 6,7-di 33.2 1.3E+02 0.0028 24.3 5.5 60 113-175 4-70 (144)
No 1
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=99.97 E-value=1.6e-31 Score=219.17 Aligned_cols=73 Identities=49% Similarity=0.840 Sum_probs=71.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
++|+|||||+|||++|++|.++|++|||+||++|+||||||+++.+|+++++++|++||||+||+||||||||
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmv 75 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMV 75 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhh
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999986
No 2
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=99.94 E-value=1.3e-27 Score=194.71 Aligned_cols=71 Identities=55% Similarity=0.914 Sum_probs=69.7
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
|+|||||+||+++|+++.++|++|||+||++|+||||+|+++.+|+++++++|++||||+||++|||||||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvv 71 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMV 71 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999985
No 3
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=99.93 E-value=1.7e-26 Score=214.96 Aligned_cols=110 Identities=45% Similarity=0.703 Sum_probs=95.5
Q ss_pred eeeceeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q 029926 69 SQGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS 148 (185)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS 148 (185)
-.|||++++.+..++ .+|.+.+.+... +.. ...+...++|+|||||+||+++|++|.++|++|||+|+++|+|
T Consensus 374 kmGhV~~~g~~~~e~-~~~~~~~~~~~~---~~~---~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~s 446 (577)
T PLN02948 374 KMGHITVVGPSAAEV-EARLDQLLAEES---ADP---DALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIVS 446 (577)
T ss_pred eeEEEEEecCCHHHH-HHHHHHHHhhhc---cCC---CCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 579999999998888 666666554333 222 2234456789999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 149 PHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 149 AHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
|||+|+++.+|+++++++|++||||+|||+|||||||
T Consensus 447 ahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~ 483 (577)
T PLN02948 447 AHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMV 483 (577)
T ss_pred CccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHH
Confidence 9999999999999999999999999999999999986
No 4
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=99.93 E-value=5.1e-27 Score=189.53 Aligned_cols=73 Identities=41% Similarity=0.751 Sum_probs=65.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
|+|+|||||+||+++++++.++|++|||+||++|+||||+|+++.+|+++++++|++|||++||++|||||+|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvv 73 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVV 73 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999975
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=99.43 E-value=1.8e-13 Score=119.22 Aligned_cols=99 Identities=21% Similarity=0.317 Sum_probs=85.3
Q ss_pred hhhhhhhhhhhcCCCceeeeccCCCC-------CCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCC----eeEEEEcCCC
Q 029926 83 ATSTRKDYSSVREPSTVFEEENANGD-------STDTPIVGIIMESDSDLPVMNDAARTLSDFGVP----YEIKILSPHQ 151 (185)
Q Consensus 83 ~~~~~~~~~~~~~p~~~~~~ea~~~~-------~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIp----yEvrVaSAHR 151 (185)
.+..-++.++.++++.+|++.++.+. +....+|+|++.++||+|++++|..+++.+|++ ||+.|++.||
T Consensus 81 ~~~e~~~~l~~~~~d~~y~e~ar~~~i~~~~~~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~ev~~~~DvGVAGiHR 160 (254)
T COG1691 81 VSPELLEALKDRFADVEYNEAARTLAIKDPNYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVEVQKVYDVGVAGIHR 160 (254)
T ss_pred CCHHHHHHhhccccceEEcccCcEEEecCCCCCcccCceEEEEecCCCCcchHHHHHHHHHHhCceEEEEEeeccchHHh
Confidence 44566778889999999999998872 233468999999999999999999999999998 7999999999
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 152 NRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 152 tPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
....+.+... ++.+++|++|||.++||++|
T Consensus 161 Ll~~l~r~~~----~~~~~lIVvAGMEGaLPsvv 190 (254)
T COG1691 161 LLSALKRLKI----EDADVLIVVAGMEGALPSVV 190 (254)
T ss_pred hhhHHHHHHh----hCCCeEEEEcccccchHHHH
Confidence 9887766554 45899999999999999975
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=98.96 E-value=1.3e-10 Score=106.15 Aligned_cols=103 Identities=20% Similarity=0.086 Sum_probs=90.4
Q ss_pred eeceeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 029926 70 QGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP 149 (185)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSA 149 (185)
.||+..|..++.+| ++|.+........ .-.+.+.++||+++|.++|..+...++.+++++|..+.++
T Consensus 179 ~~h~~~I~d~~ie~-gv~~~~~~~~~a~------------~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~~ilv~ 245 (373)
T KOG2835|consen 179 AGHNCAISDMKIEF-GVDVTLGEIVLAS------------DVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEGLILVD 245 (373)
T ss_pred cCCccccccchhhh-ccchhhhhhhhhh------------cccchhheEEcccCCcceeeeeeEEeccccCCccceEEEe
Confidence 57999999999999 7776544332221 2345689999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhhCCCeEEEEecCccCcCcCCC
Q 029926 150 HQNRKGALSYALSAKERGIKIIIVGDGVEAHLSGTL 185 (185)
Q Consensus 150 HRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGVV 185 (185)
||+|.....|+..+..+|++++||+||.++|+||+|
T Consensus 246 ~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v 281 (373)
T KOG2835|consen 246 ENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMV 281 (373)
T ss_pred ecCchhHhhhhhhcccCceEEEEeccCCCCCChhhH
Confidence 999999999999999999999999999999999975
No 7
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=95.88 E-value=0.035 Score=48.61 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=58.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|+.+-....++..+.|++-|+.+.+.....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 89 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKT 89 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchh
Confidence 4789999876666889999999999999987667778888899999999998989999999999975
No 8
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=95.81 E-value=0.037 Score=48.65 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=57.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+-....+++.+.|++-|+.+++.+.+.+-+++.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~ 89 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKT 89 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHH
Confidence 4688999876655778899999999999887777777778889999999998889999999999874
No 9
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=95.23 E-value=0.08 Score=47.06 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=56.3
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS--DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S--Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.||+|..+ .....+++.+.|++.|+++.+. -+..+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 47999999876 5678899999999999987542 3557888888999998898889999999999874
No 10
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=95.05 E-value=0.088 Score=46.81 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=52.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+- ..+++.+.|++.|+.+.+.-....-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 87 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSV 87 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchH
Confidence 469999987553 88899999999999876653445555677888888888899999999999974
No 11
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=94.85 E-value=0.11 Score=45.81 Aligned_cols=67 Identities=15% Similarity=0.141 Sum_probs=55.6
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|..+-. ...++..+.|++-|+.+.+. -+..|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 92 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSV 92 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4699999987755 77889999999989876532 2557899999999999999889999999999863
No 12
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=94.64 E-value=0.16 Score=45.08 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=55.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+-....++..+.|++-|+++.+.....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv 96 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKT 96 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHH
Confidence 4789999876655588889999999999876556677888888889998888888999999999874
No 13
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=94.64 E-value=0.12 Score=45.45 Aligned_cols=67 Identities=10% Similarity=0.019 Sum_probs=55.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.||+|..+-....+++.+.|++-|+.+.+. ....+-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~ 90 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKA 90 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHH
Confidence 479999998776677888999999999987533 3567777788888888888889999999999864
No 14
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=94.55 E-value=0.23 Score=43.74 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=56.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCCchHHHHHHHHHhhCCC---eEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKERGI---KIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSA---HRtPe~l~ey~k~ae~~Gi---kVIIAvAG~AA 179 (185)
.++.||+++.......++..+.|++-|+++.+.++.. +.+.+.+.+.++.+.+.++ +++||+-|++.
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv 97 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVV 97 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHH
Confidence 3689999887776789999999999999888777764 7888999999988888777 89999999853
No 15
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=94.49 E-value=0.16 Score=44.60 Aligned_cols=66 Identities=12% Similarity=0.068 Sum_probs=51.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAH---RtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||++..+-....++..+.|++.|+++.+.+.... .+.+.+.+.++.+++ ++++|||+-|++.
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~ 92 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTI 92 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHH
Confidence 36889988755444478899999999998876654444 788888888888766 7999999999864
No 16
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=94.24 E-value=0.28 Score=42.94 Aligned_cols=67 Identities=13% Similarity=0.045 Sum_probs=53.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCCchHHHHHHHHHhhCCC---eEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKERGI---KIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSA---HRtPe~l~ey~k~ae~~Gi---kVIIAvAG~AA 179 (185)
.++.|++|...-....+++.+.|++.|+++.+.+... +.+.+.+.+.++.+.+.++ +++||+-|++.
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 93 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVV 93 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHH
Confidence 4689999877665678899999999999987666653 5566788888888877666 89999999863
No 17
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=94.23 E-value=0.24 Score=43.84 Aligned_cols=65 Identities=14% Similarity=0.083 Sum_probs=54.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||++..+.....++..+.|++.| ++.+. ...|.+.+.+.+.++.+.+.+.++|||+-|++.
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv 99 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKV 99 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchH
Confidence 369999999887777888889999888 77655 567999999999999998888999999999753
No 18
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=94.20 E-value=0.19 Score=44.48 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=52.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|+.+- ..++..+.|++.|+++.+. -...|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 89 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSV 89 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHH
Confidence 468999987664 6788889999999866432 3457778889999999998889999999999864
No 19
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=94.10 E-value=0.17 Score=45.06 Aligned_cols=67 Identities=18% Similarity=0.124 Sum_probs=54.8
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+- ....+++.+.|++.|+.+.+. -+..|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 92 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSP 92 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 369999987654 337889999999999987543 3557888888999999999999999999999864
No 20
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=94.02 E-value=0.18 Score=45.14 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=53.4
Q ss_pred CeEEEEeccCC--CHHHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS--DLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S--Dl~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|..+ .....+++.+.|++.|+++.+.- +.++-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 96 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSP 96 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccH
Confidence 46899998654 24557899999999999765432 346778899999999999999999999999874
No 21
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=93.98 E-value=0.16 Score=45.22 Aligned_cols=67 Identities=18% Similarity=0.174 Sum_probs=54.1
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|..... ...+++.+.|++.|+++.+.- +.+|-+-+.+++.++.+++.++++|||+-|++.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~ 97 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSP 97 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 4688888866544 678899999999999765431 345888888999999998889999999999874
No 22
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=93.90 E-value=0.15 Score=44.79 Aligned_cols=65 Identities=17% Similarity=0.185 Sum_probs=55.3
Q ss_pred eEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 114 IVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~SDl~--vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
+|.||+|. +-.. .+++..+.|++-|+++.+.- +..|=+.+.+.+.++.+++.++++|||+-|++.
T Consensus 23 r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (366)
T PF00465_consen 23 RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSV 90 (366)
T ss_dssp EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHH
T ss_pred CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 89999998 4433 68999999999999985555 789999999999999999999999999999864
No 23
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=93.79 E-value=0.19 Score=45.17 Aligned_cols=67 Identities=15% Similarity=0.029 Sum_probs=52.7
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.||+|... +....+++.+.|++.|+.+.+. -+..+-+-+.+++.++.+++.++++|||+-|+|.
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 90 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSP 90 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 46889987542 3347888999999999876532 2446777789999999998999999999999874
No 24
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=93.60 E-value=0.22 Score=44.45 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=52.8
Q ss_pred CeEEEEeccCCCH--HHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL--PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl--~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+-. ...++..+.|++.|+.+.+. -+.+|-+.+.+.+.++.+++.++++||++-|+|.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 98 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSV 98 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 4799999865543 45788999999999876432 2346777788999998888999999999999874
No 25
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=93.48 E-value=0.26 Score=43.56 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=52.9
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|... +....+++.+.|++-|+++.+. -+..|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSv 93 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSA 93 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 36888887544 3346899999999999987543 2457778888999999998899999999999874
No 26
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=93.41 E-value=0.49 Score=41.96 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=54.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCC---eEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI---KIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~Gi---kVIIAvAG~AA 179 (185)
.++.||+++.......+++.+.|++-|+++.+.+.+ ++.+-+.+.+.++.+.+.|+ +++||+-|++.
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv 104 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVI 104 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHH
Confidence 368999998776678899999999999998866554 36677888888888877766 99999999853
No 27
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=93.37 E-value=0.24 Score=43.87 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=54.0
Q ss_pred CeEEEEeccCC-C-HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-D-LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-D-l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|..+ . ....+++.+.|++.|+.+.+. -+..+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 47999998766 3 345688999999999976543 2446888888999999999999999999999975
No 28
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=93.36 E-value=0.25 Score=44.17 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=53.2
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|..... ...++..+.|++.|+++.+. -+.++-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSv 98 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSP 98 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 4789998865433 37788999999999977543 1346778899999999998889999999999874
No 29
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=93.14 E-value=0.56 Score=42.19 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=54.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCCe---EEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIK---IIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~Gik---VIIAvAG~A 178 (185)
.+|.|++++.-.....++..+.|++.|+++++.+.. .+.+.+.+.+..+.+.+.+++ ++||+-|++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGs 95 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGV 95 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcH
Confidence 468899887655557788999999999998777764 467778899998888888898 999999975
No 30
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=93.10 E-value=0.54 Score=41.22 Aligned_cols=65 Identities=15% Similarity=0.120 Sum_probs=53.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|...-....+++.+.|++.| .+.+.+ ..+=+.+.+.+.++.+++.+++++||+-|++.
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~ 90 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRV 90 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchH
Confidence 368899988776678889999999999 776654 35667888888988888888999999999864
No 31
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=93.08 E-value=0.33 Score=43.20 Aligned_cols=67 Identities=18% Similarity=0.140 Sum_probs=53.6
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SD--l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..+- ....++..+.|++.|+++.+. =+..|-+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 368899886553 466789999999999976432 1346888899999999999999999999999874
No 32
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=93.02 E-value=0.35 Score=43.19 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=50.7
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|..... ...+++.+.|++.|+++.+.- +.++-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsv 97 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSP 97 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 4789998865422 367889999999999775431 234566677888888888889999999999864
No 33
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=92.89 E-value=0.37 Score=42.87 Aligned_cols=67 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|..... ...+++.+.|++.|+++.+. -+-+|-+-+.+.+.++.+++.++++|||+-|++.
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~ 95 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSV 95 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 3789998875432 35788999999999976432 2346778888999999898899999999999874
No 34
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=92.88 E-value=0.33 Score=43.38 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=51.8
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|... +....+++.+.|++.|+.+.+. =.-.+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 99 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSP 99 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHH
Confidence 46888887543 3457889999999999976543 1235666688888888888889999999999864
No 35
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=92.46 E-value=0.68 Score=39.95 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=52.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|...-....++..+.|++. +.+.+.. ...+-+-+.+.+.++.+.+.+.++|||+-|++.
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 90 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGST 90 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchH
Confidence 36888888765447888999999887 7665443 456778888999998888888999999999864
No 36
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=92.41 E-value=0.37 Score=42.80 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=53.4
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|+.- +....++....|++-|+.+.+. -+-.|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~ 95 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSS 95 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 46888888642 4557888999999999976432 2347888899999999998889999999999874
No 37
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=92.28 E-value=0.6 Score=42.47 Aligned_cols=67 Identities=13% Similarity=0.172 Sum_probs=53.0
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|... .....+++.+.|++.|+++.+. -+..+-+-+.+.+.++.+++.++++|||+-|+|.
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSv 92 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSV 92 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 46888887643 2235789999999999987643 2447888889999999999999999999999874
No 38
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=92.28 E-value=0.32 Score=44.15 Aligned_cols=66 Identities=12% Similarity=0.059 Sum_probs=50.2
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 114 IVGIIMES-DSDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS-~SDl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
++.|++|. -.+....+++.+.|++-||.+.+. -+.++=+.+.+.+.++.+++.++++|||+-|+|.
T Consensus 51 ~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~ 118 (395)
T PRK15454 51 HLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSV 118 (395)
T ss_pred EEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHH
Confidence 45555543 223456789999999999987654 3445666688999999999999999999999975
No 39
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=92.11 E-value=0.93 Score=40.74 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=54.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCC----eEEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI----KIIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~Gi----kVIIAvAG~A 178 (185)
.++.||+++....-..++..+.|++.|+++..-+.. .+.+.+.+.+..+.+.+.++ +++||+-|++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~ 99 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGV 99 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcH
Confidence 468899987665556788999999999988776666 58888999999988887777 9999999974
No 40
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=91.73 E-value=0.53 Score=42.37 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=52.8
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|.. .+....+++.+.|++.||.+.+. =+.++=+-+.+++.++.+++.++++|||+-|+|.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSP 100 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 4688888753 34567889999999999975322 2345777788999999999999999999999874
No 41
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=91.48 E-value=0.84 Score=40.17 Aligned_cols=66 Identities=5% Similarity=-0.056 Sum_probs=49.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC--CchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ--NRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR--tPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.||+++..-....+++.+.|++-|+.+++....... +-+.+.+.++.+.+ +.+++||+-|++.
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv 92 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTI 92 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHH
Confidence 369999998776656789999999999877653323334 55777788877767 7999999999853
No 42
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=91.05 E-value=0.6 Score=39.58 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=48.5
Q ss_pred eEEEEeccCCC--HHHHHHHHHHHHHhCCCe---eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 114 IVGIIMESDSD--LPVMNDAARTLSDFGVPY---EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~SD--l~vmekA~~vLeefGIpy---EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
+|+|+-=-+.| .+..+...+.|++.|+.- ++.+-.+++.++.+.+++++..+..+++||++...++
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa 71 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA 71 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH
Confidence 36666555554 567888889999999985 8888999999999999999998889999999876543
No 43
>PRK15138 aldehyde reductase; Provisional
Probab=90.79 E-value=0.57 Score=42.30 Aligned_cols=65 Identities=15% Similarity=0.128 Sum_probs=48.3
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SD--l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|++|..|- ....+++.+.|+ |+.+.+. -+.+|-+.+.+++.++.+++.++++|||+-|+|.
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 97 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSV 97 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHH
Confidence 479999886552 345677788886 6654332 2346777789999999999999999999999874
No 44
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=90.67 E-value=0.97 Score=38.58 Aligned_cols=52 Identities=23% Similarity=0.455 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchH-----------HHHHHHHHhhCCCeEEEE
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKG-----------ALSYALSAKERGIKIIIV 173 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~-----------l~ey~k~ae~~GikVIIA 173 (185)
.+|++.+++..+.|.+.|||+-+-|+..|..|.. +.++++.++++|..|++=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 5999999999999999999999999999988776 344567778899888753
No 45
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.59 E-value=1.5 Score=31.50 Aligned_cols=58 Identities=10% Similarity=0.118 Sum_probs=38.3
Q ss_pred CeEEEEeccCCCHH---HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCC-CeEEE
Q 029926 113 PIVGIIMESDSDLP---VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIII 172 (185)
Q Consensus 113 ~kVaIIMGS~SDl~---vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~G-ikVII 172 (185)
..|.|+|-|.+|.+ .+.++.+.|+++||+|+..=+..+ ++...++.+.....- ..|||
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi 69 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYV 69 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEE
Confidence 35888888766554 678999999999999977776655 544444443322222 25665
No 46
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=90.52 E-value=0.65 Score=39.06 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=38.7
Q ss_pred CCCCeEEEEeccCCCHHHH-----HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 110 TDTPIVGIIMESDSDLPVM-----NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 110 ~~~~kVaIIMGS~SDl~vm-----ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.|+.+|+|++|+.|+.... +.+.+.|++.|+.+++- -... .+.+.+ +..++++++...
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i--~~~~---~~~~~~---~~~~~D~v~~~~ 64 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI--DPGE---DIAAQL---KELGFDRVFNAL 64 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE--ecCc---chHHHh---ccCCCCEEEEec
Confidence 4666899999999987655 89999999999975543 2221 222222 234577776553
No 47
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=89.95 E-value=1.4 Score=39.58 Aligned_cols=65 Identities=22% Similarity=0.243 Sum_probs=48.5
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcC---CCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSA---HRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.|++|...- ....+++.+.|++-|+++.+ .+- +-..+.+.+.++.+.+.++++|||+-|+|.
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~ 91 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSC 91 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 468999986554 36888999999999997643 443 334455666677777788999999999874
No 48
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=89.62 E-value=1.6 Score=36.60 Aligned_cols=64 Identities=6% Similarity=-0.003 Sum_probs=46.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh-CCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeef-GIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
+|++++|..+|+-.+......|++- ++++.+-+.+-|..|..-..+.+..-..++++.+...|.
T Consensus 1 ~i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~ 65 (363)
T cd03786 1 KILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSD 65 (363)
T ss_pred CEEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCC
Confidence 4889999999999999999999886 888888888889888765555543223345555555553
No 49
>PLN02834 3-dehydroquinate synthase
Probab=89.27 E-value=2.1 Score=39.84 Aligned_cols=66 Identities=12% Similarity=0.090 Sum_probs=52.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE--EEEc---CCCCchHHHHHHHHHhhCCCe---EEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEI--KILS---PHQNRKGALSYALSAKERGIK---IIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEv--rVaS---AHRtPe~l~ey~k~ae~~Gik---VIIAvAG~A 178 (185)
.+|.||++..-.....+++.+.|++-|+++.+ .+.. .+.+.+.+.+.++.+.+.+++ ++||+-|++
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGs 174 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGV 174 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChH
Confidence 46899998876666888999999999987765 4444 467888888888888887777 999999984
No 50
>PRK11914 diacylglycerol kinase; Reviewed
Probab=89.12 E-value=2.8 Score=35.94 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=44.0
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIM----GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
++.||. |+.......+++.+.|++.|+++++... .. +....++++++.+.+++++|++-|
T Consensus 10 ~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t--~~-~~~~~~~a~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 10 KVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVG--TD-AHDARHLVAAALAKGTDALVVVGG 73 (306)
T ss_pred eEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEe--CC-HHHHHHHHHHHHhcCCCEEEEECC
Confidence 566654 6666677888899999999987665433 33 788999998887788888775544
No 51
>PRK13055 putative lipid kinase; Reviewed
Probab=88.65 E-value=2.5 Score=37.15 Aligned_cols=55 Identities=22% Similarity=0.207 Sum_probs=39.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+.+.....+++...|++.|++|++....-+ +....++++.+...+++++|++.|
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vvv~GG 68 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLIIAAGG 68 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEEEECC
Confidence 6656567778889999999987776655433 556667777666677888776654
No 52
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=88.62 E-value=1.2 Score=37.33 Aligned_cols=63 Identities=13% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 112 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 112 ~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
...|+++..+.+| ..+.+.+.+.++++| |++.+...+..+++..++++...+++++.||..++
T Consensus 59 ~~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 59 TKSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 3468988865444 234567777888888 56777888889999889998888888988876654
No 53
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=88.55 E-value=1.6 Score=38.27 Aligned_cols=66 Identities=15% Similarity=0.026 Sum_probs=48.0
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|..-.. ...+++.+.|++- +++.+. -+..+.+.+.+.+.++.+++.++++||++-|++.
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~ 90 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSA 90 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchH
Confidence 4688888754322 3567777888765 655322 2346777888889998888889999999999874
No 54
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=88.48 E-value=1.2 Score=39.23 Aligned_cols=66 Identities=14% Similarity=0.043 Sum_probs=49.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||+|...-....++..+.|++.++. .+.-+..|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~ 89 (337)
T cd08177 24 SRALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGST 89 (337)
T ss_pred CeEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 36889998765555777888888876432 1222346777888888888888889999999999874
No 55
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=88.23 E-value=3.1 Score=30.73 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=38.4
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCC-CeEEEE
Q 029926 113 PIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIV 173 (185)
Q Consensus 113 ~kVaIIMGS~SDl---~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~G-ikVIIA 173 (185)
.+|.|+|-+.+|+ |.+.+|.+.|+++||+|+..=+ ...|+...++.+...... ..|||.
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di--~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNV--LEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEEC--CCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 4699999777555 6678999999999999865433 345654444443222222 367765
No 56
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=87.25 E-value=3.1 Score=35.65 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=39.5
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.|+=|..+......++.+.|++-|++|++.. .+.+....++++++...+.+++|++-|
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~---t~~~~~a~~~a~~~~~~~~d~vv~~GG 61 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRV---TWEKGDAQRYVAEALALGVSTVIAGGG 61 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEE---ecCCCCHHHHHHHHHHcCCCEEEEEcC
Confidence 3444544455567788888999999887773 334666777887776777887775544
No 57
>PRK00861 putative lipid kinase; Reviewed
Probab=87.19 E-value=3.6 Score=35.16 Aligned_cols=59 Identities=24% Similarity=0.282 Sum_probs=39.7
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIM----GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
++.||. |+.+.....+++...|++ +++|++.+.... ....++++++...+.+++|++.|
T Consensus 4 ~~~iI~NP~sG~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv~~GG 66 (300)
T PRK00861 4 SACLIFNPVAGQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELIIASGG 66 (300)
T ss_pred eEEEEECCCCCCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEEEECC
Confidence 455543 555555667788888887 578888776654 45567777776777888776544
No 58
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=86.17 E-value=8.6 Score=30.52 Aligned_cols=64 Identities=20% Similarity=0.290 Sum_probs=48.3
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 115 VGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 115 VaIIMGS~SDl---~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
|+||+.+.+|- ...+.+.+.++++|+.+++. ..+.-+++...+.++++-.+|++.||....-..
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~ 67 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPD 67 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHH
Confidence 67888887773 34567777888888865555 678888888888998888888988887655443
No 59
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=85.52 E-value=2.8 Score=38.63 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=54.0
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCC-CeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 117 IIMESDSDLPVMNDAARTLSDFGV-PYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 117 IIMGS~SDl~vmekA~~vLeefGI-pyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
.+.--.+=.+..+...+.|+++|. +.++.+-+||=++..+.++++....++.+|+|++++-+
T Consensus 37 ~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~ 99 (322)
T COG2984 37 QFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPA 99 (322)
T ss_pred EeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHH
Confidence 344555666788899999999999 88999999999999999999999999999999999844
No 60
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=85.27 E-value=5.9 Score=29.69 Aligned_cols=62 Identities=15% Similarity=0.243 Sum_probs=43.8
Q ss_pred EEEEeccC-C---CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESD-S---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~-S---Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|++|..+. + -....+.+.+.++++|..+++.+......|+...+.++....++++.+|....
T Consensus 2 Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~ 67 (269)
T cd01391 2 IGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPS 67 (269)
T ss_pred ceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCC
Confidence 66666443 1 22334555667778677788888888888888888887777778888877654
No 61
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=85.26 E-value=3 Score=35.14 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=57.6
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+.. ..+.-|.+. ++.+....+..|+++..+-+| ....+.+.+.+++.|. .+.+...+..++...++
T Consensus 31 ~tr~rV~~~-a~elgY~pn~~ar~l~~~~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~ 107 (343)
T PRK10727 31 ASRLAVHSA-MESLSYHPNANARALAQQSTETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQA 107 (343)
T ss_pred HHHHHHHHH-HHHHCCCCCHHHHhhhhCCCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHH
Confidence 555544433 334555554 344433344579999876554 2346677788888885 56666777788888888
Q ss_pred HHHHhhCCCeEEEEecC
Q 029926 160 ALSAKERGIKIIIVGDG 176 (185)
Q Consensus 160 ~k~ae~~GikVIIAvAG 176 (185)
++...+++++-+|..+.
T Consensus 108 i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 108 IEQLIRHRCAALVVHAK 124 (343)
T ss_pred HHHHHhcCCCEEEEecC
Confidence 88877788887776643
No 62
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=84.73 E-value=4.3 Score=33.84 Aligned_cols=62 Identities=15% Similarity=0.176 Sum_probs=44.3
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+|+||..+.+| ....+.+.+.++++|..|++.+...+..|+.-.++++.+.+.+++.||..+
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~ 65 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNL 65 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 36777765544 233456777777766667888888888888888888888777888777654
No 63
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=84.46 E-value=2.2 Score=37.58 Aligned_cols=65 Identities=17% Similarity=-0.001 Sum_probs=46.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||++..+-....++..+.|++.++.+ .+.+-=-+-+.+++.++.+++.+++++||+-|++.
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~--~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~ 88 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFV--LRYDGECSEENIERLAAQAKENGADVIIGIGGGKV 88 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEE--EEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHH
Confidence 368899886664445666666666566644 33331177788889999998889999999999864
No 64
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=84.33 E-value=6.1 Score=35.31 Aligned_cols=64 Identities=17% Similarity=0.050 Sum_probs=49.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEc---CCCCchHHHHHHHHHhhCC---CeEEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILS---PHQNRKGALSYALSAKERG---IKIIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLee-fGIpyEvrVaS---AHRtPe~l~ey~k~ae~~G---ikVIIAvAG~A 178 (185)
.++.|++++.-.....++..+.|+. .++. +.+.+ .+.+.+.+.+..+.+.+.| .+++||+-|++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~--~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGs 94 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVH--ILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGA 94 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCce--EEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcH
Confidence 4688999887766788999999987 6664 44555 4778888888887777655 79999999975
No 65
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=84.30 E-value=9.4 Score=30.53 Aligned_cols=59 Identities=12% Similarity=0.209 Sum_probs=35.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|++++...+| ....+.+.+.+++.|+ ++.+......++.-.++++.+...+++.||..+
T Consensus 2 igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~ 63 (282)
T cd06318 2 IGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINP 63 (282)
T ss_pred eeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 6666665555 1234455566666664 455555666676666677666667776666543
No 66
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=84.17 E-value=3.5 Score=34.40 Aligned_cols=87 Identities=10% Similarity=0.088 Sum_probs=54.7
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
++|+..+... .+.-|.+. ++.+.......|+++....+| ..+.+.+.+.+++.| |++.+......++...++
T Consensus 35 ~tr~rV~~~a-~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~ 111 (331)
T PRK14987 35 ALRGKIAAAL-DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHG--YQTMLAHYGYKPEMEQER 111 (331)
T ss_pred HHHHHHHHHH-HHhCCCccHHHHHHhhCCCCEEEEEeCCCcchhHHHHHHHHHHHHHHCC--CEEEEecCCCCHHHHHHH
Confidence 5555444332 23334443 333333334579999876554 345667888888888 466666667778777778
Q ss_pred HHHHhhCCCeEEEEe
Q 029926 160 ALSAKERGIKIIIVG 174 (185)
Q Consensus 160 ~k~ae~~GikVIIAv 174 (185)
++...+.+++-+|..
T Consensus 112 ~~~~~~~~vdgiI~~ 126 (331)
T PRK14987 112 LESMLSWNIDGLILT 126 (331)
T ss_pred HHHHHhcCCCEEEEc
Confidence 877777788887764
No 67
>PRK13054 lipid kinase; Reviewed
Probab=84.12 E-value=5 Score=34.47 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=40.4
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+++.||+=..+ -.....++...|++-|++|++.. .+.++...++++++...+++++|++-|
T Consensus 4 ~~~~~i~N~~~~~~~~~~~~~~~l~~~g~~~~v~~---t~~~~~a~~~a~~~~~~~~d~vvv~GG 65 (300)
T PRK13054 4 PKSLLILNGKSAGNEELREAVGLLREEGHTLHVRV---TWEKGDAARYVEEALALGVATVIAGGG 65 (300)
T ss_pred ceEEEEECCCccchHHHHHHHHHHHHcCCEEEEEE---ecCCCcHHHHHHHHHHcCCCEEEEECC
Confidence 45555543333 34567777888999999877733 334666778887777777888775544
No 68
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=84.05 E-value=5.1 Score=37.20 Aligned_cols=67 Identities=21% Similarity=0.248 Sum_probs=55.3
Q ss_pred CeEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.|+++.. .....++++.+.|++-||+|.+.- +..+-+-+.+.+-++.+++.+++.|||+-|+|.
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~ 98 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSV 98 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccH
Confidence 4688888875 557799999999999998875543 346777778888888899999999999999985
No 69
>PRK13337 putative lipid kinase; Reviewed
Probab=83.83 E-value=3.3 Score=35.67 Aligned_cols=54 Identities=19% Similarity=0.150 Sum_probs=38.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+........++...|++.|++|++.... .+.+..++++++.+++.+++|++.|
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~vvv~GG 66 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDLVIAAGG 66 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCEEEEEcC
Confidence 44444556677788899999988877665 3567777777777777887776554
No 70
>PRK10586 putative oxidoreductase; Provisional
Probab=83.83 E-value=3.6 Score=37.15 Aligned_cols=64 Identities=9% Similarity=-0.014 Sum_probs=48.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++.||.|..+-........+.|++-|+.+ .+.+-+-+.+.+.++.+..+ .++++||++-|++.
T Consensus 35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~ 98 (362)
T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGAL 98 (362)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHH
Confidence 468999998776666677788899988754 45666677888888876664 57899999999864
No 71
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=83.68 E-value=3.4 Score=41.21 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=50.3
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHH--HhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSD-LPVMNDAARTLS--DFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SD-l~vmekA~~vLe--efGIpyEvrVaS---AHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.+|.||+|.... ....+++.+.|+ .-|+.+ .+.+ .|-+.+.+.+.++.+++.++++|||+-|++.
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSv 551 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSP 551 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchH
Confidence 578999875443 337788899998 666654 4544 5777789999999999999999999999864
No 72
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=83.66 E-value=4.7 Score=36.24 Aligned_cols=63 Identities=11% Similarity=-0.077 Sum_probs=44.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEE-EcCCCCchHHHHHHHHHhhC---CCeEEEEecCccC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKI-LSPHQNRKGALSYALSAKER---GIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrV-aSAHRtPe~l~ey~k~ae~~---GikVIIAvAG~AA 179 (185)
++.|+++ .+-+. ++..+.|++-|+++.+.- +.++=+.+.+++.++.+++. ++++|||+-|+|.
T Consensus 27 ~~lvvtd-~~~~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~ 93 (347)
T cd08184 27 PAVFFVD-DVFQG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGST 93 (347)
T ss_pred eEEEEEC-cchhh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence 4666665 33333 677788888899876542 34566667788888877766 8999999999864
No 73
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=83.61 E-value=7.2 Score=33.00 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=38.1
Q ss_pred eEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIM----GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
++.||. |+.......+++.+.|++.|+++++... -++ ....++++.+.+.+++++|++-|
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t-~~~--~~~~~~~~~~~~~~~d~ivv~GG 66 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVT-WEK--GDAARYVEEARKFGVDTVIAGGG 66 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEe-cCc--ccHHHHHHHHHhcCCCEEEEECC
Confidence 566654 5555567788899999999998776443 232 22334555555566787776544
No 74
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=83.06 E-value=12 Score=29.91 Aligned_cols=61 Identities=8% Similarity=0.177 Sum_probs=36.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+++....+| ..+.+.+.+.++++|..|++.+......+++..++++.+.+.+++-+|..+
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~ 65 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNA 65 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence 5556554444 233445556666666666666666666676666666666666666555543
No 75
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=83.00 E-value=12 Score=30.70 Aligned_cols=64 Identities=14% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
...|+++..+.+| ....+.+.+.++++|+.. .+...+..|++..++++...+++++.+|..+..
T Consensus 26 ~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~ 92 (295)
T PRK10653 26 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTD 92 (295)
T ss_pred CCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 3469999987665 344566778888998654 455677889888888888878888877766543
No 76
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=82.87 E-value=5.5 Score=28.55 Aligned_cols=51 Identities=25% Similarity=0.324 Sum_probs=39.7
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHh-hCCC-eEEE
Q 029926 121 SDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK-ERGI-KIII 172 (185)
Q Consensus 121 S~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae-~~Gi-kVII 172 (185)
+.++=|.+++|.+.|++.|++|+...+..|-. ++..++++... .+.+ .|||
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCCcCEEEE
Confidence 45668999999999999999999998887776 77878887663 3334 4554
No 77
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=82.86 E-value=4.5 Score=31.00 Aligned_cols=52 Identities=13% Similarity=0.275 Sum_probs=40.5
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ ..+++...+.++++||.++....+..-+.+++.+.++...+
T Consensus 32 Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 84 (117)
T PF00763_consen 32 LAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNE 84 (117)
T ss_dssp EEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred EEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 46677776554 55688889999999999999999999999999999987754
No 78
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=82.63 E-value=12 Score=29.55 Aligned_cols=58 Identities=19% Similarity=0.233 Sum_probs=35.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+|++-+.+| ....+.+.+.++++|+ .+-+.+....+++..++++...+++++.+|..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 62 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALI 62 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEe
Confidence 5666654333 2334566677777773 44456666677777677766666667666654
No 79
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=82.61 E-value=12 Score=29.42 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=43.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+|++...++ ....+.+.+.+++.|. .+.+...+..|+...++++...+.+++.+|....
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 6777755444 2456666777888884 5666677888988888888888888888887643
No 80
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=82.29 E-value=7.6 Score=27.55 Aligned_cols=53 Identities=32% Similarity=0.433 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
...+++.+.+++.|++.+..+...+...+.+.+ .+++.+++++|.+......+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~---~a~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILR---TAKERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHH---HHHhcCCCEEEEecCCCCCc
Confidence 445566667777899988888765543344444 44567789999888776554
No 81
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=82.22 E-value=9.3 Score=31.86 Aligned_cols=68 Identities=10% Similarity=0.170 Sum_probs=48.9
Q ss_pred CCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 107 GDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 107 ~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+.......|+++..+.+| ..+.+.+.+.+++.| |.+.+...+..++...++++.+.+.+++.||....
T Consensus 59 l~~~~~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 129 (342)
T PRK10014 59 LRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGA 129 (342)
T ss_pred hccCCCCEEEEEeCCCccchHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 333334579999876444 344566778888888 56677777888888888888888888988887654
No 82
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=82.07 E-value=13 Score=29.54 Aligned_cols=61 Identities=10% Similarity=0.136 Sum_probs=39.7
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+|+++..+.+| ....+.+.+.++++|+.+.+ ...=..|+...++++..-..+++.+|..++
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 36777776555 33456667778888865443 444346777777777666667887777665
No 83
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=81.78 E-value=9.7 Score=25.96 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=42.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.|.|+.-+..+.+.+.+....|..-|+.+++-.. .+.+..-.+++ +..|+..+|.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a---~~~g~~~~iiig~ 60 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREA---QLQKIPYILVVGD 60 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHH---HHcCCCEEEEECc
Confidence 4778877888899999999999999987776442 46666666555 4678876665553
No 84
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.04 E-value=10 Score=32.12 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=47.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC---------------------CchHHHHHHHHHhhCCCeEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ---------------------NRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR---------------------tPe~l~ey~k~ae~~GikVII 172 (185)
++-+|=|-..|.+.+++.++.+.++++. .+.++..|. +++.+.++.+-+++.|.+|.|
T Consensus 133 R~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~i 211 (213)
T PRK10076 133 RLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVTV 211 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEEe
Confidence 5778888777889999999999999876 788899887 345566666777788999987
No 85
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=80.85 E-value=20 Score=27.52 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEeccC-C--CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 115 VGIIMESD-S--DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 115 VaIIMGS~-S--Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
|+++.-.. + -....+.+.+.++++|+ ++.+.-.+-+++...+.++.+.+.+++.+|..+...
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~ 66 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDL 66 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 56666432 1 13445566677788886 566777777888888888878777899888876543
No 86
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=80.78 E-value=5.6 Score=35.03 Aligned_cols=55 Identities=15% Similarity=0.257 Sum_probs=46.2
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+|-.......+++.+.|++-|..+++++.... ....++++++...+++.+||+.|
T Consensus 13 sG~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via~GG 67 (301)
T COG1597 13 SGKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIAAGG 67 (301)
T ss_pred ccccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEEecC
Confidence 34344566788999999999999999998766 88899999988889999999877
No 87
>PRK09492 treR trehalose repressor; Provisional
Probab=80.58 E-value=6.2 Score=32.52 Aligned_cols=87 Identities=16% Similarity=0.159 Sum_probs=55.4
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+.. ..+.-|.+. ++.+.......|++|....+| ...++.+.+.+++.| |++-+......++...++
T Consensus 34 ~tr~rV~~~-a~elgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~~~~~~~~~~~~~~~ 110 (315)
T PRK09492 34 ETRERVEAV-INQHGFSPSKSARAMRGQSDKVVGIIVSRLDSLSENQAVRTMLPAFYEQG--YDPIIMESQFSPEKVNEH 110 (315)
T ss_pred HHHHHHHHH-HHHHCCCcCHHHHHhhcCCCCeEEEEecCCcCcccHHHHHHHHHHHHHcC--CeEEEEecCCChHHHHHH
Confidence 555544332 223334443 333333333579999865433 456778888888888 466677777888888888
Q ss_pred HHHHhhCCCeEEEEe
Q 029926 160 ALSAKERGIKIIIVG 174 (185)
Q Consensus 160 ~k~ae~~GikVIIAv 174 (185)
++...+.+++-+|..
T Consensus 111 ~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 111 LGVLKRRNVDGVILF 125 (315)
T ss_pred HHHHHhcCCCEEEEe
Confidence 888878788766654
No 88
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=80.45 E-value=19 Score=28.53 Aligned_cols=60 Identities=10% Similarity=0.199 Sum_probs=42.2
Q ss_pred EEEEeccCC---CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDS---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~S---Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+|+.-+.+ .....+.+.+.++++| |++.+......++...++++....++++.+|..+.
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 566664433 3455667777888887 56777778888877778888887778887776554
No 89
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=80.38 E-value=17 Score=28.50 Aligned_cols=59 Identities=14% Similarity=0.222 Sum_probs=37.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|++|..+.+| ....+.+.+.++++|+ ++.+......++...++++.+.+.+++-+|..+
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~ 63 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNP 63 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeC
Confidence 5666655554 4556677777777774 445555555666666777766666776665544
No 90
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=80.33 E-value=17 Score=27.34 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=38.3
Q ss_pred eEEEEeccCC-C---HHHHHHHHHHHHHhCCCeeEEEEcCCC---------------CchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDS-D---LPVMNDAARTLSDFGVPYEIKILSPHQ---------------NRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~S-D---l~vmekA~~vLeefGIpyEvrVaSAHR---------------tPe~l~ey~k~ae~~GikVIIAv 174 (185)
+|.||.||.. + ...++.+.+.|++.| +|+.++..+- .++.+.++.+...+ ++.+|-+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~--aD~iI~~ 77 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE--ADGIIFA 77 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH--SSEEEEE
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceec--CCeEEEe
Confidence 7999999984 3 344666666677775 4667777665 46677777877766 4555443
No 91
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.26 E-value=15 Score=30.00 Aligned_cols=51 Identities=6% Similarity=-0.051 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh--C-CCeEEEEecCc
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE--R-GIKIIIVGDGV 177 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~--~-GikVIIAvAG~ 177 (185)
+..+++.+.+++.|.......+ --..++.+.++++...+ . .++++|..||.
T Consensus 40 ~~l~~~~~~i~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 40 SALKDTYEQCSALTDNVYSFQL-KDFSQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHHHHHHhcCCCeEEEEc-cCCCHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 3334444444444443222111 12456667766655533 2 47888888874
No 92
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=80.18 E-value=5 Score=33.25 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=54.0
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SDl---~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+ +.-.+.-|.+. ++.+.......|++++...+|. ...+.+.+.+++.| |++.+...+..++...++
T Consensus 31 ~tr~rV~-~~a~~lgY~pn~~a~~l~~~~~~~Igvv~~~~~~~f~~~l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~ 107 (329)
T TIGR01481 31 ATRKKVL-EVIKRLDYRPNAVARGLASKRTTTVGVIIPDISNIYYAELARGIEDIATMYK--YNIILSNSDEDPEKEVQV 107 (329)
T ss_pred HHHHHHH-HHHHHHCCCCCHHHHHHhhCCCCEEEEEeCCCCchhHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHH
Confidence 4444433 33334445543 3333333345799999765552 23445666777776 567777788888888888
Q ss_pred HHHHhhCCCeEEEEe
Q 029926 160 ALSAKERGIKIIIVG 174 (185)
Q Consensus 160 ~k~ae~~GikVIIAv 174 (185)
++...+.+++-+|..
T Consensus 108 ~~~l~~~~vdGiIi~ 122 (329)
T TIGR01481 108 LNTLLSKQVDGIIFM 122 (329)
T ss_pred HHHHHhCCCCEEEEe
Confidence 877777788777754
No 93
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=80.14 E-value=16 Score=32.84 Aligned_cols=108 Identities=9% Similarity=-0.027 Sum_probs=70.6
Q ss_pred ceeeEeeeceeeee-cc-----ccchhhhhhhhhhhcCCCceeeec--cCC--C---C--CCCCCeEEEEeccCCCHHHH
Q 029926 64 SVRTVSQGTIPVLA-SS-----NGSATSTRKDYSSVREPSTVFEEE--NAN--G---D--STDTPIVGIIMESDSDLPVM 128 (185)
Q Consensus 64 ~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~p~~~~~~e--a~~--~---~--~~~~~kVaIIMGS~SDl~vm 128 (185)
-|..+-+||..-+. || .+.....+...+.+..|++.+..- ++. . . ......+.-|.-+.+|.+..
T Consensus 38 Gv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~~~~ 117 (337)
T PRK08195 38 GVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEADVS 117 (337)
T ss_pred CCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecchHHHH
Confidence 36777777755443 11 222334555556555666665531 111 1 0 11112233334478899999
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
++..+..++.|....+.+.-+|+. |+++.++++.+++-|++.|
T Consensus 118 ~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i 161 (337)
T PRK08195 118 EQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCV 161 (337)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEE
Confidence 999999999999999999999987 6888999999988888764
No 94
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=79.57 E-value=14 Score=31.08 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=47.4
Q ss_pred CeEEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHHHhhC-CCeEEEEecC
Q 029926 113 PIVGIIMESD--SDLPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSAKER-GIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~--SDl~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~ae~~-GikVIIAvAG 176 (185)
.+|.|+.||. .|..-+.++++.|++-||..++--.+ .+-++++++.|.+...+. +-..+..=+|
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~~~ 175 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVPPG 175 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeCCC
Confidence 4788888887 45566778999999999987666555 899999999999888543 3344444343
No 95
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=79.43 E-value=13 Score=24.58 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=38.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.|.|+.-+..+.+.+.+....|.+-|+..++.... +.+++ ..+.++..|+..+|.+
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~---~~~~a~~~~~~~~i~i 58 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKK---QFKYADRSGARFAVIL 58 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHH---HHHHHHHcCCCEEEEE
Confidence 57888878888888999999999999977665432 34444 4445556777654444
No 96
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=79.23 E-value=18 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=39.7
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|++|..+.+| ....+.+.+.+++.|. ++.+...+..|+...++++...+.+++.+|..+
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMG 63 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeC
Confidence 5666655433 3345566677777764 555666788888888888777777787777653
No 97
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=79.12 E-value=15 Score=26.39 Aligned_cols=61 Identities=26% Similarity=0.180 Sum_probs=50.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCe---------------------eEEEEcCCCCchHHHHHHHHHhhCCCeEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPY---------------------EIKILSPHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpy---------------------EvrVaSAHRtPe~l~ey~k~ae~~GikVII 172 (185)
+=.++.|+-+.+..++.+...|.++|... -+-++|......++.+.++.++++|++| |
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~v-i 84 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPV-I 84 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEE-E
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeE-E
Confidence 35678899999999999999998888642 3678888999999999999999999988 4
Q ss_pred Eec
Q 029926 173 VGD 175 (185)
Q Consensus 173 AvA 175 (185)
++.
T Consensus 85 ~iT 87 (131)
T PF01380_consen 85 LIT 87 (131)
T ss_dssp EEE
T ss_pred EEe
Confidence 443
No 98
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=78.99 E-value=8.8 Score=33.54 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=39.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhC-CCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER-GIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~-GikVIIAvAG~AA 179 (185)
.++.||+|... .+++.+.|++.++ .++.+.. ..+-+.+++..+.++.. +.++|||+-|++.
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv 87 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKV 87 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 36899998765 7788888888777 3444442 23333444444444333 5899999999753
No 99
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=78.89 E-value=10 Score=31.07 Aligned_cols=91 Identities=16% Similarity=0.052 Sum_probs=61.3
Q ss_pred chhhhhhhhhhhcCCCceeeeccCCC------CCCCCCeEEEEeccCC--------------CHHHHHHHHHHHHHhCCC
Q 029926 82 SATSTRKDYSSVREPSTVFEEENANG------DSTDTPIVGIIMESDS--------------DLPVMNDAARTLSDFGVP 141 (185)
Q Consensus 82 ~~~~~~~~~~~~~~p~~~~~~ea~~~------~~~~~~kVaIIMGS~S--------------Dl~vmekA~~vLeefGIp 141 (185)
++..+...++.+..|...+..-.... .........-+..+.| +++.+.++.+.+++.|++
T Consensus 51 ~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~ 130 (265)
T cd03174 51 EDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLE 130 (265)
T ss_pred CCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 44456666777776655554322221 0111122333444556 688899999999999999
Q ss_pred eeEEEEcCCC---CchHHHHHHHHHhhCCCeEEE
Q 029926 142 YEIKILSPHQ---NRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 142 yEvrVaSAHR---tPe~l~ey~k~ae~~GikVII 172 (185)
+.+.+..+.| +|+++.++++.+.+-|++.|.
T Consensus 131 v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 131 VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999988885 789999999999888886544
No 100
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.65 E-value=19 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=39.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|++|....+| ....+.+.+.+++.| |++-+...+.+++...++++....++++-+|..+
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~ 63 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAG--LRVILCNTDEDPEKEAMYLELMEEERVTGVIFAP 63 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeC
Confidence 5666655443 334566777788887 4556667777888777777777777777666654
No 101
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=78.47 E-value=18 Score=24.44 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=34.0
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEE
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIII 172 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVII 172 (185)
|-|.+- +.=+.+++|.+.|++.||+|+..=+. ..|+...++.+-.....+ .|||
T Consensus 3 v~ly~~--~~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~~~~g~~~vP~v~i 57 (73)
T cd03027 3 VTIYSR--LGCEDCTAVRLFLREKGLPYVEINID--IFPERKAELEERTGSSVVPQIFF 57 (73)
T ss_pred EEEEec--CCChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHHhCCCCcCEEEE
Confidence 344443 33488999999999999999877665 345555555543333332 4444
No 102
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=78.20 E-value=3.4 Score=34.32 Aligned_cols=85 Identities=13% Similarity=0.067 Sum_probs=55.2
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeec--cCCC----CCCC------CCeEEEEeccCCCHH---HHHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEE--NANG----DSTD------TPIVGIIMESDSDLP---VMNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~SDl~---vmekA~~vLeef 138 (185)
||+||..-.| +=.++.+....++++|+|| ++-. ++.. +++ .|++|..|-.+ .+++....|+++
T Consensus 6 NvVas~~l~~-~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGK-iviTGaks~e~a~~a~~~i~~~L~~~ 83 (174)
T cd04516 6 NIVATVNLGC-KLDLKKIALRARNAEYNPKRFAAVIMRIREPKTTALIFSSGK-MVCTGAKSEDDSKLAARKYARIIQKL 83 (174)
T ss_pred EEEEEEEcCC-eecHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCe-EEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 7888887777 7778888888899999987 3322 1111 122 35688777554 467888899999
Q ss_pred CCCe-------eEEEEcC-CCCchHHHHHH
Q 029926 139 GVPY-------EIKILSP-HQNRKGALSYA 160 (185)
Q Consensus 139 GIpy-------EvrVaSA-HRtPe~l~ey~ 160 (185)
|++. +--|+|+ -..|=+|++++
T Consensus 84 g~~~~~~~~~v~Nivat~~l~~~i~L~~la 113 (174)
T cd04516 84 GFPAKFTDFKIQNIVGSCDVKFPIRLEGLA 113 (174)
T ss_pred CCCCCCCceEEEEEEEEEECCCcccHHHHH
Confidence 9753 2234554 33455566655
No 103
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=77.94 E-value=6.9 Score=32.97 Aligned_cols=88 Identities=9% Similarity=0.036 Sum_probs=56.9
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+... .+.-|.+. ++.+.......|++++...+| ....+.+.+.++++| |++.+...+..++...++
T Consensus 31 ~tr~kV~~~a-~elgY~pn~~a~~l~~~~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~ 107 (346)
T PRK10401 31 DTREAVMKAV-SELGYRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQ--KYVLIGNSYHEAEKERHA 107 (346)
T ss_pred HHHHHHHHHH-HHHCCCCCHHHHHhhcCCCCEEEEEeCCCCCccHHHHHHHHHHHHHHCC--CEEEEEcCCCChHHHHHH
Confidence 5666555444 23335544 333433344579999865443 234566777888887 466677778888888888
Q ss_pred HHHHhhCCCeEEEEec
Q 029926 160 ALSAKERGIKIIIVGD 175 (185)
Q Consensus 160 ~k~ae~~GikVIIAvA 175 (185)
++...+++++-+|...
T Consensus 108 i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 108 IEVLIRQRCNALIVHS 123 (346)
T ss_pred HHHHHhcCCCEEEEeC
Confidence 8888788888777654
No 104
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=77.74 E-value=16 Score=30.20 Aligned_cols=88 Identities=6% Similarity=0.129 Sum_probs=55.4
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+... .+.-|.+. ++.+.......|++++.+.+| ....+.+.+.+++.| |++.+......+++..++
T Consensus 28 ~tr~rV~~~a-~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~ 104 (327)
T PRK10423 28 AITAKVEAAI-KELNYAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERG--YSLVLCNTEGDEQRMNRN 104 (327)
T ss_pred HHHHHHHHHH-HHHCCCccHHHHHHhhCCCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHH
Confidence 5555444332 22334433 333333344579999876443 345667778888888 566666667788888888
Q ss_pred HHHHhhCCCeEEEEec
Q 029926 160 ALSAKERGIKIIIVGD 175 (185)
Q Consensus 160 ~k~ae~~GikVIIAvA 175 (185)
++...+.+++-+|...
T Consensus 105 ~~~l~~~~vdGiI~~~ 120 (327)
T PRK10423 105 LETLMQKRVDGLLLLC 120 (327)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 8888788888777654
No 105
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=77.69 E-value=5.1 Score=32.01 Aligned_cols=57 Identities=16% Similarity=0.060 Sum_probs=40.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
.+|.|+=-|. .+.+..+..|.+-| ..|...|+....+.++++. ++++|++.|...-+
T Consensus 29 k~v~VvGrs~---~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~~-----ADIVvsAtg~~~~i 85 (140)
T cd05212 29 KKVLVVGRSG---IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVHD-----ADVVVVGSPKPEKV 85 (140)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHhh-----CCEEEEecCCCCcc
Confidence 3566665553 47788888887765 5677778777778777753 69999999987433
No 106
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=77.31 E-value=17 Score=28.46 Aligned_cols=58 Identities=17% Similarity=0.398 Sum_probs=32.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|++|..+.+| ....+.+.+.++++|+ ++.+......|++..++++.....+++.+|..
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~ 62 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIIIN 62 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 4555555444 3445566666666653 44445445566666666666555556655543
No 107
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=77.28 E-value=22 Score=28.03 Aligned_cols=58 Identities=12% Similarity=0.299 Sum_probs=41.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|++|+-+.++ ....+.+.+.++++|. ++.+...+..++...+.++.....+++.+|..
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~ 62 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILC 62 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5666655444 3456778888888874 55666678888888888888877788766654
No 108
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=77.16 E-value=22 Score=28.25 Aligned_cols=58 Identities=9% Similarity=0.201 Sum_probs=38.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+||..+.++ ....+.+.+.++++|. ++.+......++...++++.+.+.+++-+|..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~ 62 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFV 62 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 6777754333 3466777778888884 55555444577777778877777778777664
No 109
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=76.94 E-value=23 Score=28.22 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=19.7
Q ss_pred HHHHHHHHh---CCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 130 DAARTLSDF---GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 130 kA~~vLeef---GIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+.+.++++ |..+++.+....-.++...+.++.+.+++++.||..+
T Consensus 20 ~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~ 68 (272)
T cd06300 20 EFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINP 68 (272)
T ss_pred HHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 333444444 4433444443333444444444444444444444433
No 110
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.77 E-value=23 Score=28.39 Aligned_cols=46 Identities=9% Similarity=0.053 Sum_probs=21.6
Q ss_pred HHHHHHHHHhC---CCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 129 NDAARTLSDFG---VPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 129 ekA~~vLeefG---IpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+.+.+.++++| ..|++.+..+...++...++++.+...+++.||..
T Consensus 19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~ 67 (274)
T cd06311 19 WHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVIL 67 (274)
T ss_pred HHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33444444442 34455555544444444445554444445544443
No 111
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=76.39 E-value=25 Score=27.84 Aligned_cols=59 Identities=10% Similarity=0.203 Sum_probs=40.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+|+..+.+| ....+.+.+.++++|. .+.+......|++..++++....++++.+|...
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMC 63 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEec
Confidence 6777765433 2335566677888884 555666777888888888888778887666644
No 112
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=76.17 E-value=18 Score=29.10 Aligned_cols=57 Identities=14% Similarity=0.211 Sum_probs=27.2
Q ss_pred EEEEeccCCC--H-HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD--L-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD--l-~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|++|+.+.+| + ...+.+.+.++++|+ ++.+.... .+++..+.++.+..++++.||..
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~ 61 (289)
T cd01540 2 IGFIVKQPEEPWFQTEWKFAKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVIC 61 (289)
T ss_pred eeeecCCCCCcHHHHHHHHHHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEEc
Confidence 4555544433 1 223344555555553 34444444 45555555555555555544443
No 113
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=76.10 E-value=15 Score=31.15 Aligned_cols=63 Identities=8% Similarity=0.006 Sum_probs=49.9
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.=|.-+.||.+.++++.+..++.|....+.+.-++|. |+.+.++++.+.+-|++.| ..+-..+
T Consensus 102 iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT~G 165 (263)
T cd07943 102 VRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDSAG 165 (263)
T ss_pred EEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCCCC
Confidence 3344588999999999999999999888888667765 8888999999988888864 5555443
No 114
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=75.41 E-value=14 Score=33.88 Aligned_cols=67 Identities=9% Similarity=0.117 Sum_probs=45.8
Q ss_pred CeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEE----E----cCCCCchHHHHHHHHHhhCCCe---EEEEecCcc
Q 029926 113 PIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKI----L----SPHQNRKGALSYALSAKERGIK---IIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrV----a----SAHRtPe~l~ey~k~ae~~Gik---VIIAvAG~A 178 (185)
.++.||+++.-. .+..++..+.|++-|+++.+.. + .++-.|+.+.+..+.+.+.+++ ++||+-|++
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 368888865433 2456788888888888764322 1 2333446688888777777776 999999986
Q ss_pred C
Q 029926 179 A 179 (185)
Q Consensus 179 A 179 (185)
.
T Consensus 123 v 123 (389)
T PRK06203 123 V 123 (389)
T ss_pred H
Confidence 3
No 115
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=75.14 E-value=28 Score=28.57 Aligned_cols=60 Identities=10% Similarity=0.320 Sum_probs=41.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+||....+| ....+.+.+.++++|+ ++.+......|++..++++.+...+++.||..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPV 64 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecC
Confidence 6777766555 2334566677777775 5566667777887778887777777887777653
No 116
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.94 E-value=27 Score=27.76 Aligned_cols=58 Identities=16% Similarity=0.327 Sum_probs=38.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+||+.+.++ ....+.+.+.++++| |++.+.....+++...++++....++++-+|..
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 62 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYG--YTVLLCNTYRGGVSEADYVEDLLARGVRGVVFI 62 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCC--CEEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 5666654333 234567777777777 455566677777777788877777778766664
No 117
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.82 E-value=32 Score=27.25 Aligned_cols=60 Identities=22% Similarity=0.316 Sum_probs=42.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+|+.-+.+| ....+.+.+.+++.| |.+.+...+-.+++..++++...+++++-+|....
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSG--YSPIIATGHWNQSRELEALELLKSRRVDALILLGG 64 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 6666654333 234556777888888 56666667888888888888888888877776653
No 118
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=74.77 E-value=20 Score=28.32 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=36.4
Q ss_pred eEEEEeccCCC----HHHHHHHHHHHH-HhCCCeeEEEEcCCC-------------CchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSD----LPVMNDAARTLS-DFGVPYEIKILSPHQ-------------NRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SD----l~vmekA~~vLe-efGIpyEvrVaSAHR-------------tPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+|.+|.||.+. ...++.+.+.+. +.|.++ .++..+. .|+.+.++.+..++ ++.||-+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev--~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~t 76 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISP--RTIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVGS 76 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeE--EEEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEEC
Confidence 58999999976 556666676664 456543 3333222 36777788877766 55555543
No 119
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=74.75 E-value=18 Score=29.95 Aligned_cols=88 Identities=15% Similarity=0.184 Sum_probs=53.4
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+.. ..+.-|.+. ++.+.......|++++...+| ..+.+.+.+.+++.|+ ++.+...+..++...++
T Consensus 33 ~tr~rV~~~-a~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~ 109 (328)
T PRK11303 33 KTVEKVMAV-VREHNYHPNAVAAGLRAGRTRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEMRC 109 (328)
T ss_pred HHHHHHHHH-HHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHH
Confidence 455443332 223334443 333333344579999865444 2234566677788885 55566667788887888
Q ss_pred HHHHhhCCCeEEEEec
Q 029926 160 ALSAKERGIKIIIVGD 175 (185)
Q Consensus 160 ~k~ae~~GikVIIAvA 175 (185)
++...+.+++-+|...
T Consensus 110 ~~~l~~~~vdgiIi~~ 125 (328)
T PRK11303 110 AEHLLQRQVDALIVST 125 (328)
T ss_pred HHHHHHcCCCEEEEcC
Confidence 8877777888777654
No 120
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=74.59 E-value=32 Score=26.99 Aligned_cols=60 Identities=12% Similarity=0.225 Sum_probs=38.5
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|++|....+| ....+.+.+.++++|. .+.+.+....++...++++.+.+.+++.+|..+.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5666653333 2344566667788875 4555555667777777887777777877776654
No 121
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=74.48 E-value=29 Score=27.71 Aligned_cols=60 Identities=18% Similarity=0.262 Sum_probs=39.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+|++.+.+| ..+.+.+.+.++++|+ ++.+..+-..++.-.+.++.....+++-+|..++
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGY--SLLLASTNNDPERERKCLENMLSQGIDGLIIEPT 64 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecc
Confidence 5666655443 3556677777788875 4445555667777777777777777877776544
No 122
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=74.34 E-value=21 Score=29.63 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=41.3
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC-------------CchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ-------------NRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR-------------tPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
..+.|.|.+|+...- ++.+.|+++. .+.+.|.+.+. +.+.+.+++.. ++++|+-+|-
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~~-----ad~vIs~~G~ 260 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMAA-----ADLVISKGGY 260 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHHh-----CCEEEECCCH
Confidence 346788888886544 6777888877 67888887775 23455555542 6999999996
Q ss_pred c
Q 029926 178 E 178 (185)
Q Consensus 178 A 178 (185)
+
T Consensus 261 ~ 261 (318)
T PF13528_consen 261 T 261 (318)
T ss_pred H
Confidence 5
No 123
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=74.26 E-value=20 Score=29.78 Aligned_cols=88 Identities=11% Similarity=0.171 Sum_probs=54.8
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+.. ..+.-|.+. ++.+.......|++++...+| ....+.+.+.+++.|. .+.+......++...++
T Consensus 32 ~tr~rV~~~-a~~lgY~pn~~a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~ 108 (327)
T TIGR02417 32 ETVERVMAV-VREQGYQPNIHAASLRAGRSRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVV 108 (327)
T ss_pred HHHHHHHHH-HHHhCCCCCHHHHHhhcCCCceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHH
Confidence 555443332 233334433 333333333579999875444 3456677777888875 56666777788888888
Q ss_pred HHHHhhCCCeEEEEec
Q 029926 160 ALSAKERGIKIIIVGD 175 (185)
Q Consensus 160 ~k~ae~~GikVIIAvA 175 (185)
++....++++-+|...
T Consensus 109 ~~~l~~~~vdgiIi~~ 124 (327)
T TIGR02417 109 IENLLARQVDALIVAS 124 (327)
T ss_pred HHHHHHcCCCEEEEeC
Confidence 8888788888777654
No 124
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=74.17 E-value=19 Score=23.80 Aligned_cols=49 Identities=20% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhC-CC-eEEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER-GI-KIIIV 173 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~-Gi-kVIIA 173 (185)
++=+.+.+|...|++.||+|+..-+. ..|+...++.+..... ++ .|||.
T Consensus 8 ~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 8 PNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred CCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHhCCCCccCEEEEC
Confidence 45599999999999999999766554 4477777766544332 34 45443
No 125
>PRK05867 short chain dehydrogenase; Provisional
Probab=73.89 E-value=31 Score=27.72 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=27.8
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
+.++++|+|+.+ .+...+++.|-+.|. +|+-..|+++.++++.+
T Consensus 8 ~~k~vlVtGas~--gIG~~ia~~l~~~G~----~V~~~~r~~~~~~~~~~ 51 (253)
T PRK05867 8 HGKRALITGAST--GIGKRVALAYVEAGA----QVAIAARHLDALEKLAD 51 (253)
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCC----EEEEEcCCHHHHHHHHH
Confidence 346888888877 456677777777664 23334566665555443
No 126
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=73.85 E-value=24 Score=23.68 Aligned_cols=32 Identities=28% Similarity=0.163 Sum_probs=25.2
Q ss_pred CeeEEEEcCCCCchHHHHHHHHHhhCCCeEEE
Q 029926 141 PYEIKILSPHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 141 pyEvrVaSAHRtPe~l~ey~k~ae~~GikVII 172 (185)
+--+-++|..+..+++.+.++.++++|.+++.
T Consensus 48 ~d~~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 48 GDVVIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 34567788888888899999999999887543
No 127
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=73.68 E-value=22 Score=26.26 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=40.3
Q ss_pred CCCeEEEEeccCCCHHHH--HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 111 DTPIVGIIMESDSDLPVM--NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vm--ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
|+.+|.++.||--==..+ +++.+.|++.|+++++.=++. .++..++ .++++||+..-...
T Consensus 1 mk~kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~~~~~ 62 (94)
T PRK10310 1 MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTARVDR 62 (94)
T ss_pred CCCeEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECCcccc
Confidence 334688888886555554 889999999999988665443 3333333 34788888765433
No 128
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=73.47 E-value=29 Score=28.76 Aligned_cols=59 Identities=12% Similarity=0.184 Sum_probs=37.1
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEE-cCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVa-SAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+++..+.+| ..+.+.+.+.++++|+ ++.+. .....++...++++.+.+.+++-||..+
T Consensus 2 I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~ 64 (298)
T cd06302 2 IAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVP 64 (298)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 6666665555 2345566677777774 45554 3456777777777776666677666654
No 129
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=73.35 E-value=34 Score=27.34 Aligned_cols=59 Identities=15% Similarity=0.302 Sum_probs=32.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHh-CCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeef-GIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+++.++.+| ....+.+.+.+++. |+ ++.+......++...++++.+-.++++.||...
T Consensus 2 ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~ 64 (270)
T cd06308 2 IGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISP 64 (270)
T ss_pred EEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEec
Confidence 5666665555 23344555555554 43 444445555666666666666566666665543
No 130
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=73.26 E-value=27 Score=27.87 Aligned_cols=60 Identities=18% Similarity=0.342 Sum_probs=28.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+||.-+.+| ....+.+.+.+++.|+...+........|+.-.+.++.+.+++++.+|..
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 64 (275)
T cd06320 2 YGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFS 64 (275)
T ss_pred eeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEEC
Confidence 5555544333 12234455555666543332222234455555555555555556555543
No 131
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.75 E-value=26 Score=27.87 Aligned_cols=59 Identities=17% Similarity=0.345 Sum_probs=30.6
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcC--CCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSP--HQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSA--HRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
||+||....+| ...++.+.+.+++.|. .+.+... ...|++..+++++....+++-+|..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~ 64 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLA 64 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEc
Confidence 36666654333 2234445555666654 3444322 4566666666665555556555543
No 132
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=72.33 E-value=18 Score=32.63 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=47.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCC---eEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGI---KIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~Gi---kVIIAvAG~AA 179 (185)
.++.||+...-.....+...+.|+ ++ ++.+.+ .+.+.+.+.+..+.+.+.|+ +++||+-|++.
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv 88 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGII 88 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHH
Confidence 368888877554446777777776 33 445555 59999999999999988888 89999999863
No 133
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=72.31 E-value=5.7 Score=32.61 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=37.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSG 183 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPG 183 (185)
+-++|.|... .+.+..+..|.+- ...|...|...+.+.++.+. ++++|+++|..+-+++
T Consensus 37 k~v~VvGrs~--~VG~Pla~lL~~~----~atVt~~h~~T~~l~~~~~~-----ADIVVsa~G~~~~i~~ 95 (160)
T PF02882_consen 37 KKVVVVGRSN--IVGKPLAMLLLNK----GATVTICHSKTKNLQEITRR-----ADIVVSAVGKPNLIKA 95 (160)
T ss_dssp -EEEEE-TTT--TTHHHHHHHHHHT----T-EEEEE-TTSSSHHHHHTT-----SSEEEE-SSSTT-B-G
T ss_pred CEEEEECCcC--CCChHHHHHHHhC----CCeEEeccCCCCcccceeee-----ccEEeeeecccccccc
Confidence 3444444422 3566777777776 45677789988888888863 7999999999887764
No 134
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=72.04 E-value=36 Score=27.78 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=39.6
Q ss_pred eEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+|++|..+-++ ..+.+.+.+.++++| |.+.+......+++..++++.+..+.++-||...
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~ 64 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGG 64 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 47777766444 244556667777777 4566666666777777777777777777666654
No 135
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=71.44 E-value=13 Score=34.57 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=57.2
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
..+.|+.|-..---..++..+.|+..|+ ...-+..-+=+-++++++.+.+.+.+.+|+|++-|+..
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~ 96 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKT 96 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHH
Confidence 4699999999988889999999999998 56667778889999999998887778999999999853
No 136
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=71.44 E-value=23 Score=31.97 Aligned_cols=67 Identities=22% Similarity=0.313 Sum_probs=42.2
Q ss_pred CCCeEEEEe-ccCC------CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 111 DTPIVGIIM-ESDS------DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 111 ~~~kVaIIM-GS~S------Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
..++|+||+ |++- |.. ..-....|+++|+......+-+| .++.+.+.++.+.++|++++|.-+|.+.
T Consensus 158 r~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsv 231 (312)
T cd03522 158 RPLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASV 231 (312)
T ss_pred CCCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCccc
Confidence 356899986 6521 221 22345568899987544444333 4566666666666667999999988764
No 137
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=71.44 E-value=7.1 Score=34.27 Aligned_cols=61 Identities=8% Similarity=0.111 Sum_probs=42.7
Q ss_pred CeEEEEeccCCCH-----HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDSDL-----PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~SDl-----~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.+|+||. +++|+ ..++...+.+++.|+.+...... ...+....++++..++.+ +|||..+.
T Consensus 138 ~~vaiiy-~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-rvii~~~~ 203 (387)
T cd06386 138 RSALLVY-EDDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD-ETKDLDLDEIIRAIQASE-RVVIMCAG 203 (387)
T ss_pred eEEEEEE-EcCCCCccceehHHHHHHHHHhcCceEEEEecC-CCCcccHHHHHHHHHhcC-cEEEEecC
Confidence 4689886 34442 23777788899999887654332 334567888888888877 89888754
No 138
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=71.32 E-value=14 Score=23.94 Aligned_cols=48 Identities=19% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIII 172 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVII 172 (185)
..=+.++++.+.|++.|++|+..=++-+ ++..+++.+.....++ .|||
T Consensus 7 ~~C~~C~~~~~~L~~~~i~y~~~dv~~~--~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 7 PGCPYCKKAKEFLDEKGIPYEEVDVDED--EEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp TTSHHHHHHHHHHHHTTBEEEEEEGGGS--HHHHHHHHHHHSSSSSSEEEE
T ss_pred CCCcCHHHHHHHHHHcCCeeeEcccccc--hhHHHHHHHHcCCCccCEEEE
Confidence 5668899999999999999977777766 3555555554444444 4444
No 139
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=70.95 E-value=26 Score=23.01 Aligned_cols=59 Identities=15% Similarity=0.060 Sum_probs=41.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCee----------EEE-EcCCCCchHHHHHHHHHh-hCCCeEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYE----------IKI-LSPHQNRKGALSYALSAK-ERGIKIII 172 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyE----------vrV-aSAHRtPe~l~ey~k~ae-~~GikVII 172 (185)
.-.|.+||-++.+.+++...-|+..|.+.. .+| ++...+.++..+..+... ..|.+-+|
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 467889999999999999999999888631 222 257788888888888777 66666655
No 140
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=70.94 E-value=17 Score=32.39 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=42.9
Q ss_pred CCCeEEEEeccCC-----CHH----HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeE
Q 029926 111 DTPIVGIIMESDS-----DLP----VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 111 ~~~kVaIIMGS~S-----Dl~----vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikV 170 (185)
..+.|+|+.|++| |.+ .+++....++..| ..+.|..-.|||+++.+.+++.-+....+
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~ 211 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGV 211 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCce
Confidence 3578999999987 333 4456666666777 47999999999999999987665433344
No 141
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=70.87 E-value=42 Score=26.35 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=39.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|++|.-+.+| ....+.+.+.++++| |++.+......+++..++++.+...+++.+|..+
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 63 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAG--YQLLLGNTGYSPEREEELLRTLLSRRPAGLILTG 63 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcC--CEEEEecCCCCchhHHHHHHHHHHcCCCEEEEeC
Confidence 5555543332 334466777788887 4566666777788877888777777787777654
No 142
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=70.75 E-value=35 Score=27.24 Aligned_cols=60 Identities=18% Similarity=0.259 Sum_probs=35.6
Q ss_pred EEEEecc---CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMES---DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS---~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+||... .......+.+.+.++++|. ++.+......++...+.++.+.+.+++-+|...+
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGY--SLLIANSLNDPERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecC
Confidence 4555533 3344455666677777764 4444455566776777776666666766666543
No 143
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=70.67 E-value=26 Score=34.36 Aligned_cols=102 Identities=13% Similarity=0.054 Sum_probs=71.1
Q ss_pred cccchhhhhhhhhhhcCCCceeeeccC------------C-----C--CCCCCCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 79 SNGSATSTRKDYSSVREPSTVFEEENA------------N-----G--DSTDTPIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~p~~~~~~ea~------------~-----~--~~~~~~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
-++++..+|...+.+..|++.+.--.+ + + .......+.-|.=+-+|.+.++.+.+..++.|
T Consensus 58 ~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G 137 (593)
T PRK14040 58 FLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDPRNLETALKAVRKVG 137 (593)
T ss_pred ccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcC
Confidence 356777899999999999888632111 1 0 01111234444458899999999999999999
Q ss_pred CCeeEEEE---cCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 140 VPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 140 IpyEvrVa---SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
...+..|+ |+--+++.+.++++.+.+-|++ .|+++-+++.|
T Consensus 138 ~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad-~i~i~Dt~G~l 181 (593)
T PRK14040 138 AHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVD-SLCIKDMAGLL 181 (593)
T ss_pred CeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCC-EEEECCCCCCc
Confidence 87655554 4433789999999999998987 56666665544
No 144
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=70.58 E-value=39 Score=26.88 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=37.2
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+||..+.+| ....+.+.+.++++|+.+ .+...+..++.-.++++.+..++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~--~~~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHL--IITAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEE--EEEeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 5566655443 244566677777887644 3444555666667777777777788777754
No 145
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=70.18 E-value=47 Score=25.77 Aligned_cols=60 Identities=17% Similarity=0.311 Sum_probs=36.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|++|.-..+| ....+.+.+.+++.|+ ++.+......|+...++++.....+++.+|....
T Consensus 2 ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 2 IGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred EEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6666643322 2345556666777664 5555566667777777777766667777776543
No 146
>PRK00394 transcription factor; Reviewed
Probab=70.17 E-value=9.9 Score=31.67 Aligned_cols=87 Identities=15% Similarity=0.134 Sum_probs=55.4
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeecc--CCC----CCCC------CCeEEEEeccCCCHHH---HHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEEN--ANG----DSTD------TPIVGIIMESDSDLPV---MNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea--~~~----~~~~------~~kVaIIMGS~SDl~v---mekA~~vLeef 138 (185)
||+||-.-.| +=.++.+....++++|+|+- +-. .+.. +++ .+++|..|-.+. +++..+.|+++
T Consensus 5 NvVas~~l~~-~ldL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIf~sGK-iv~tGa~S~~~a~~a~~~~~~~l~~~ 82 (179)
T PRK00394 5 NIVASTDLGQ-ELDLEKVAEDLPNAEYNPEQFPGLVYRLEDPKIAALIFRSGK-VVCTGAKSVEDLHEAVKIIIKKLKEL 82 (179)
T ss_pred EEEEEEEcCC-CcCHHHHHhhCCCceeCcccCceEEEEecCCceEEEEEcCCc-EEEEccCCHHHHHHHHHHHHHHHHHc
Confidence 7888888777 77888999889999999983 322 1111 112 356887776554 55666778899
Q ss_pred CCCe----eEEE----EcC-CCCchHHHHHHHH
Q 029926 139 GVPY----EIKI----LSP-HQNRKGALSYALS 162 (185)
Q Consensus 139 GIpy----EvrV----aSA-HRtPe~l~ey~k~ 162 (185)
|++. +++| +|+ -..|=++++++..
T Consensus 83 g~~~~~~~~~~i~NiVas~~l~~~i~L~~la~~ 115 (179)
T PRK00394 83 GIKVIDEPEIKVQNIVASADLGVELNLNAIAIG 115 (179)
T ss_pred CCCccCCCceEEEEEEEEEEcCCeEcHHHHHHh
Confidence 9764 3333 443 2345556666543
No 147
>PRK09526 lacI lac repressor; Reviewed
Probab=70.08 E-value=12 Score=31.28 Aligned_cols=87 Identities=8% Similarity=0.073 Sum_probs=51.1
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCC-CCchHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPH-QNRKGALS 158 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAH-RtPe~l~e 158 (185)
+||+..+... .+.-|.+. ++.+.......|++++.+.++ ....+.+.+.+++.|.. +.+.... -.++...+
T Consensus 35 ~tr~rV~~~a-~elgY~pn~~a~~l~~~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~--~~i~~~~~~~~~~~~~ 111 (342)
T PRK09526 35 KTREKVEAAM-AELNYVPNRVAQQLAGKQSLTIGLATTSLALHAPSQIAAAIKSRADQLGYS--VVISMVERSGVEACQA 111 (342)
T ss_pred HHHHHHHHHH-HHHCCCcCHHHHHhhcCCCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCE--EEEEeCCCChHHHHHH
Confidence 4454433322 22334443 333333334579999986544 24567777888888855 4444333 34566667
Q ss_pred HHHHHhhCCCeEEEEe
Q 029926 159 YALSAKERGIKIIIVG 174 (185)
Q Consensus 159 y~k~ae~~GikVIIAv 174 (185)
+++...+.+++-+|..
T Consensus 112 ~l~~l~~~~vdGiii~ 127 (342)
T PRK09526 112 AVNELLAQRVSGVIIN 127 (342)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 7877777888777764
No 148
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=70.02 E-value=38 Score=32.02 Aligned_cols=109 Identities=15% Similarity=0.027 Sum_probs=75.6
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeeccC--CC-----------------CCCCCCeEEEEeccCCCHHHHHHHH
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENA--NG-----------------DSTDTPIVGIIMESDSDLPVMNDAA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~--~~-----------------~~~~~~kVaIIMGS~SDl~vmekA~ 132 (185)
|.++--|-..+...+|...+.+..|++.+.--.+ ++ .......+.-|.-+-||...++++.
T Consensus 50 tf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~v 129 (448)
T PRK12331 50 TFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVRNLETAV 129 (448)
T ss_pred cchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH
Confidence 5565445567778899999999989887742111 00 0111234555566789999999999
Q ss_pred HHHHHhCCCeeEEEE---cCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 133 RTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 133 ~vLeefGIpyEvrVa---SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+..++.|...++.+. +.--+++.+.++++.+.+-|++. |+++-+++.|
T Consensus 130 ~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~-I~i~Dt~G~l 180 (448)
T PRK12331 130 KATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADS-ICIKDMAGIL 180 (448)
T ss_pred HHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCE-EEEcCCCCCC
Confidence 999999987655443 33456799999999999989874 7777766654
No 149
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=69.90 E-value=14 Score=30.83 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=55.3
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+... +...+.-|.+. ++.+.......|+++....++ ...++.+.+.+++.| |++-+...+..++...++
T Consensus 31 ~tr~rV~-~~a~~lgY~pn~~a~~l~~~~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~g--y~~~i~~~~~~~~~~~~~ 107 (311)
T TIGR02405 31 ETRERVE-QVIQQSGFVPSKSARAMRGGSDKVVAVIVSRLDSPSENLAVSGMLPVFYTAG--YDPIIMESQFSPQLTNEH 107 (311)
T ss_pred HHHHHHH-HHHHHHCCCcCHHHHHhhcCCCCEEEEEeCCcccccHHHHHHHHHHHHHHCC--CeEEEecCCCChHHHHHH
Confidence 5555433 33333334443 333333334579999864333 345778888888888 466777788899988888
Q ss_pred HHHHhhCCCeEEEEe
Q 029926 160 ALSAKERGIKIIIVG 174 (185)
Q Consensus 160 ~k~ae~~GikVIIAv 174 (185)
++......++-+|..
T Consensus 108 ~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 108 LSVLQKRNVDGVILF 122 (311)
T ss_pred HHHHHhcCCCEEEEe
Confidence 887777778766654
No 150
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=69.83 E-value=30 Score=33.42 Aligned_cols=109 Identities=15% Similarity=0.045 Sum_probs=77.0
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeeccCC--C-----------------CCCCCCeEEEEeccCCCHHHHHHHH
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENAN--G-----------------DSTDTPIVGIIMESDSDLPVMNDAA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~--~-----------------~~~~~~kVaIIMGS~SDl~vmekA~ 132 (185)
|.++.-=-..|....|...+.+..|.+.+.--.+- + .......|.-|.-+-||.+.++.+.
T Consensus 51 tfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv~nl~~ai 130 (499)
T PRK12330 51 TFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDPRNLEHAM 130 (499)
T ss_pred chhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChHHHHHHHH
Confidence 34432233456678899999999998777644321 1 0111235677778889999999999
Q ss_pred HHHHHhCCCeeEEEE---cCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 133 RTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 133 ~vLeefGIpyEvrVa---SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+..++.|...+..|+ |+--+++.+.++++.+.+-|++ .|+++-+++.|
T Consensus 131 ~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad-~I~IkDtaGll 181 (499)
T PRK12330 131 KAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGAD-SICIKDMAALL 181 (499)
T ss_pred HHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCC-EEEeCCCccCC
Confidence 999999987644441 3333899999999999999987 56777776654
No 151
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=69.66 E-value=32 Score=28.50 Aligned_cols=59 Identities=22% Similarity=0.319 Sum_probs=33.0
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCC--CCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPH--QNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAH--RtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+++++-+.+| ....+.+.+.+++.|. ++.+.+.. ..+++..++++.+.+++++-+|..+
T Consensus 2 igvvvp~~~n~f~~~~~~gi~~~a~~~g~--~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~ 65 (295)
T TIGR02955 2 LCALYPHLKDSYWLSINYGMVEQAKHLGV--ELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGT 65 (295)
T ss_pred eeEEecCCCcHHHHHHHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655444 2334455566666664 44444432 3556666677767677776666543
No 152
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=69.65 E-value=8.1 Score=33.71 Aligned_cols=66 Identities=9% Similarity=0.086 Sum_probs=43.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE-cCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVa-SAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
.++.||+|...-....++..+.|+..|+++.+-.. ..+=+-+.+.++.+.++..+++++|++-|+.
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~ 86 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGT 86 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHH
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcH
Confidence 37999999988777788999999999998763321 1222455566677777667899999998874
No 153
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.42 E-value=7.3 Score=35.02 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=27.5
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 143 EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 143 EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
...|...|...+.+.++.++ ++++|+++|.+.-+.
T Consensus 183 ~atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i~ 217 (284)
T PRK14177 183 NATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFIK 217 (284)
T ss_pred CCEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCccC
Confidence 36788889777778888764 699999999987553
No 154
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=69.05 E-value=20 Score=33.65 Aligned_cols=46 Identities=13% Similarity=0.077 Sum_probs=34.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHH
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALS 162 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ 162 (185)
+|+|+ ||+- .+...+.+++.++.=.|++..++||++.+++.+.+++
T Consensus 3 ~VaIL-GsTG--SIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~ 48 (385)
T PRK05447 3 RITIL-GSTG--SIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQARE 48 (385)
T ss_pred eEEEE-cCCh--HHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHH
Confidence 45554 5443 4677788888877667899999999999999888764
No 155
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=68.98 E-value=15 Score=32.68 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=45.1
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEE---cCCCCchHHHHHHHHHhhCC--CeEEEEecCccC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERG--IKIIIVGDGVEA 179 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVa---SAHRtPe~l~ey~k~ae~~G--ikVIIAvAG~AA 179 (185)
.+|.|++|... +....++..+.|++. ++.+. -.|-+.+.+.+.++.+++.+ +++|||+-|+|.
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~----~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSv 92 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR----LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSV 92 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC----cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 46889987643 235667777777643 23333 36777788888888877766 999999999975
No 156
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=68.84 E-value=23 Score=30.30 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=20.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPHQ 151 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLee-fGIpyEvrVaSAHR 151 (185)
+|+|++|+..|+-.+......|++ -++++.+-+.+-|.
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~ 40 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR 40 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH
Confidence 455555555555555555555554 24555555555553
No 157
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=68.46 E-value=15 Score=25.41 Aligned_cols=57 Identities=19% Similarity=0.012 Sum_probs=37.1
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~---SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.|+|+.-+. .+.+.+.+.+..|...|+..++-.- .+.+.+- ++.++..|+..+|.+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~k~---i~~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPGVK---FADADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcccc---hhHHHhcCCCEEEEEC
Confidence 478887766 4667788888888888887766431 3444444 4445577887665554
No 158
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=68.01 E-value=44 Score=32.68 Aligned_cols=109 Identities=15% Similarity=-0.001 Sum_probs=76.7
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeeccCC--C-----------------CCCCCCeEEEEeccCCCHHHHHHHH
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENAN--G-----------------DSTDTPIVGIIMESDSDLPVMNDAA 132 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~--~-----------------~~~~~~kVaIIMGS~SDl~vmekA~ 132 (185)
|.++--+-..+...+|...+.+..|++.+..-.+. + .......+.-|.-+-||..-++.+.
T Consensus 45 tfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~~n~~~~i 124 (582)
T TIGR01108 45 TFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDPRNLQAAI 124 (582)
T ss_pred ccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHHHHHHHH
Confidence 55655565667788999999998898777654221 0 0111234555667789999999999
Q ss_pred HHHHHhCCCeeEEEEcCC---CCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 133 RTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 133 ~vLeefGIpyEvrVaSAH---RtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+..++.|...+..++-.. -+++.+.++++.+.+-|++. |+++-+++.+
T Consensus 125 ~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~-I~i~Dt~G~~ 175 (582)
T TIGR01108 125 QAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDS-ICIKDMAGIL 175 (582)
T ss_pred HHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCCCCCc
Confidence 999999987776654332 25699999999999889874 6776666544
No 159
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=67.93 E-value=31 Score=28.16 Aligned_cols=76 Identities=9% Similarity=0.106 Sum_probs=48.9
Q ss_pred Cceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 97 STVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 97 ~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
+.-|++. ++.+.......|+++.-+.++ ....+.+.+.++++|+ ++.+......++.-.++++....++++-+
T Consensus 18 elgY~pn~~a~~l~~~~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vDgi 95 (309)
T PRK11041 18 EVGYSPQSLGRNLKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEHGY--LVLIGDCAHQNQQEKTFVNLIITKQIDGM 95 (309)
T ss_pred HHCCCcCHHHHHhhcCCCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEE
Confidence 3445544 444433334579988765433 3456788888999985 55555555667777788877777888766
Q ss_pred EEe
Q 029926 172 IVG 174 (185)
Q Consensus 172 IAv 174 (185)
|..
T Consensus 96 Ii~ 98 (309)
T PRK11041 96 LLL 98 (309)
T ss_pred EEe
Confidence 654
No 160
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=67.84 E-value=9.1 Score=31.81 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=56.9
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeecc--CCC----CCCC------CCeEEEEeccCCCHHH---HHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEEN--ANG----DSTD------TPIVGIIMESDSDLPV---MNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea--~~~----~~~~------~~kVaIIMGS~SDl~v---mekA~~vLeef 138 (185)
||+||..-.| +=.++.+....++++|+|+- +.. .++. +++ .+++|..|-.+. +++..+.|+++
T Consensus 6 NvVas~~l~~-~ldL~~la~~~~n~eY~P~~fpgli~Rl~~Pk~t~lIF~SGK-iv~tGaks~~~a~~a~~~~~~~L~~~ 83 (174)
T cd04518 6 NIVASVDLGQ-ELDLEKVAAELPNAEYNPDQFPGLVYRLEDPKIAALIFRSGK-MVCTGAKSVEDLHRAVKEIIKKLKDY 83 (174)
T ss_pred EEEEEEEcCC-eecHHHHHhhCCCcEECCCcCcEEEEEccCCcEEEEEECCCe-EEEEccCCHHHHHHHHHHHHHHHHhc
Confidence 8899988888 77888998889999999973 222 1111 122 367888776443 67788889999
Q ss_pred CCCe----eEEE----EcC-CCCchHHHHHHHH
Q 029926 139 GVPY----EIKI----LSP-HQNRKGALSYALS 162 (185)
Q Consensus 139 GIpy----EvrV----aSA-HRtPe~l~ey~k~ 162 (185)
|++. +++| +|+ -..|=+|+.++..
T Consensus 84 g~~~~~~~~~~i~NIVas~~l~~~i~L~~la~~ 116 (174)
T cd04518 84 GIKVIEKPEIKVQNIVASADLGREVNLDAIAIG 116 (174)
T ss_pred CCCccCCCceEEEEEEEEEEcCCccCHHHHHhh
Confidence 9653 3333 553 2345556666543
No 161
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=67.64 E-value=53 Score=25.95 Aligned_cols=45 Identities=13% Similarity=0.104 Sum_probs=24.7
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+.+.+.+++.|+ ++.+......+++..++++.+..++++.+|..+
T Consensus 20 ~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~ 64 (275)
T cd06317 20 KAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILWP 64 (275)
T ss_pred HHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEec
Confidence 445555566653 344444455666666666555555666555543
No 162
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=67.11 E-value=56 Score=25.76 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=29.4
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+++..+.+| ....+.+.+.++++|+ ++.+...-..++...++++...+.+++-+|..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 62 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIVV 62 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEc
Confidence 4555543222 2334455555666654 34444444455555566665556566555543
No 163
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.93 E-value=8.7 Score=34.70 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=27.3
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 144 IKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 144 vrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 190 atVtv~hs~T~~l~~~~~~-----ADIvVsAvGkp~~i~ 223 (297)
T PRK14168 190 ATVTIVHTRSKNLARHCQR-----ADILIVAAGVPNLVK 223 (297)
T ss_pred CEEEEecCCCcCHHHHHhh-----CCEEEEecCCcCccC
Confidence 5677789888888888864 699999999987654
No 164
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=66.89 E-value=59 Score=25.47 Aligned_cols=43 Identities=5% Similarity=0.061 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
+.+.+.++++|+. +.+...-..++...+.++....++++.+|.
T Consensus 19 ~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiii 61 (266)
T cd06282 19 QGIQEEARAAGYS--LLLATTDYDAEREADAVETLLRQRVDGLIL 61 (266)
T ss_pred HHHHHHHHHCCCE--EEEeeCCCCHHHHHHHHHHHHhcCCCEEEE
Confidence 3444444444432 222222233444444444444444444443
No 165
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=66.57 E-value=50 Score=26.13 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
.+.+.+.+++.|+ ++.+......++.-.++++.+.+++++.+|.
T Consensus 18 ~~~i~~~~~~~g~--~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii 61 (267)
T cd06322 18 ANAMKEEAKKQKV--NLIVSIANQDLNKQLSDVEDFITKKVDAIVL 61 (267)
T ss_pred HHHHHHHHHhcCC--EEEEecCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3444445555553 3333333344555555555554555555544
No 166
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=66.41 E-value=49 Score=26.93 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=36.3
Q ss_pred eEEEEeccCCCHH----HHHHHHHHHHHhCCCeeEEEEcCCC--CchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIMESDSDLP----VMNDAARTLSDFGVPYEIKILSPHQ--NRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIMGS~SDl~----vmekA~~vLeefGIpyEvrVaSAHR--tPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
||+||.-..++-+ ..+.+.+.|+++|+.+.+.....+. .++.-.++++.+.+++++.+|....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3666665432112 2345566777787655544333332 5566667777777777877776543
No 167
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=66.33 E-value=45 Score=28.12 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=38.0
Q ss_pred EEeccCCCHHHH---HHH-HHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 117 IIMESDSDLPVM---NDA-ARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 117 IIMGS~SDl~vm---ekA-~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
++.|+..|...- .+. .+.-+++|+++++.-.. ..+++..+-++.+.++|+++||+..
T Consensus 5 l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~--~~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 5 VYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV--PEGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred EEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC--CchHhHHHHHHHHHHcCCCEEEECc
Confidence 445777784432 333 33335688876654332 2688888888888888999999843
No 168
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=66.23 E-value=8.6 Score=33.20 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=46.0
Q ss_pred eeeeeccccchhhhhhhhhhhcCCCceeeec--cCCCCCCCCCeE---------EEEeccCCCHHH---HHHHHHHHHHh
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEE--NANGDSTDTPIV---------GIIMESDSDLPV---MNDAARTLSDF 138 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kV---------aIIMGS~SDl~v---mekA~~vLeef 138 (185)
=||.||.+-.+ +--++.+...+|+++|.++ ++-.-.-..|++ .|++|.+|=-+. .++..+.|++.
T Consensus 11 eNIVAS~~L~~-elDL~~~~~~l~~aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaKs~ed~~~av~~~~~~L~~~ 89 (185)
T COG2101 11 ENIVASVDLGQ-ELDLEEVALDLPGAEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAKSVEDVHRAVKKLAKKLKDG 89 (185)
T ss_pred EEEEEEechhh-hccHHHHHhhCCCCccCHhHCCeeEEEecCCcceEEEEecCcEEEeccCcHHHHHHHHHHHHHHHHhc
Confidence 38999998887 6667788888888888887 433310011111 367888875543 56677778888
Q ss_pred CCCe
Q 029926 139 GVPY 142 (185)
Q Consensus 139 GIpy 142 (185)
|++.
T Consensus 90 g~~~ 93 (185)
T COG2101 90 GIDI 93 (185)
T ss_pred CcCc
Confidence 8865
No 169
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=66.17 E-value=25 Score=24.55 Aligned_cols=55 Identities=22% Similarity=0.235 Sum_probs=36.6
Q ss_pred EEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~---SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+|+.=+. +-.+.+.+....|...|+..++.- -++++.+-.. +|...|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~~---~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQIK---YADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHHH---HHHHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHHH---HHhhcCCeEEEEE
Confidence 66666666 557788999999999997655544 5555555444 4446677665554
No 170
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=66.03 E-value=8.9 Score=34.63 Aligned_cols=35 Identities=11% Similarity=0.309 Sum_probs=28.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 143 EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 143 EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
...|...|.....+.++.++ ++++|+++|...-++
T Consensus 184 ~aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i~ 218 (294)
T PRK14187 184 NCTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFVK 218 (294)
T ss_pred CCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 36788889888888888865 699999999987654
No 171
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=65.92 E-value=17 Score=32.51 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=40.2
Q ss_pred CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 110 TDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 110 ~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
...++|+||+|+.| .+..+++..|-+-| .+|+=++|++++.++.++....
T Consensus 32 ~~~~~~~vVTGans--GIG~eta~~La~~G----a~Vv~~~R~~~~~~~~~~~i~~ 81 (314)
T KOG1208|consen 32 DLSGKVALVTGATS--GIGFETARELALRG----AHVVLACRNEERGEEAKEQIQK 81 (314)
T ss_pred cCCCcEEEEECCCC--chHHHHHHHHHhCC----CEEEEEeCCHHHHHHHHHHHHh
Confidence 34558999999998 89999999999999 3566688999887777765543
No 172
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=65.39 E-value=35 Score=32.58 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=73.7
Q ss_pred eeeeeccccchhhhhhhhhhhcCCCceeeeccC--CC-----------------CCCCCCeEEEEeccCCCHHHHHHHHH
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEENA--NG-----------------DSTDTPIVGIIMESDSDLPVMNDAAR 133 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~--~~-----------------~~~~~~kVaIIMGS~SDl~vmekA~~ 133 (185)
.++-.|-..+...+|...+.+..|++.+..-.. ++ .......+.-|.-+-||+.-++.+.+
T Consensus 50 fd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~~n~~~~i~ 129 (467)
T PRK14041 50 FDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDIRNLEKSIE 129 (467)
T ss_pred chhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHHHHHHHHHH
Confidence 343344455667889999998888887754111 00 01112346666778899999999999
Q ss_pred HHHHhCCCeeEEEE---cCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 134 TLSDFGVPYEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 134 vLeefGIpyEvrVa---SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
..++.|...+..++ ++=-+++.+.++++.+.+-|++ .|+++-+++.+
T Consensus 130 ~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad-~I~i~Dt~G~l 179 (467)
T PRK14041 130 VAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVD-SICIKDMAGLL 179 (467)
T ss_pred HHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCCc
Confidence 99999987764443 2222568899999999888987 57777666554
No 173
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=65.23 E-value=32 Score=32.45 Aligned_cols=60 Identities=12% Similarity=-0.002 Sum_probs=42.8
Q ss_pred eEEEE----eccCCCHHHHH-HHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGII----MESDSDLPVMN-DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaII----MGS~SDl~vme-kA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
++.|| .|..+...+.+ ++...|++.|++|++.+.- .+....++++++...+++.||++-|
T Consensus 113 r~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~---~~ghA~~la~~~~~~~~D~VV~vGG 177 (481)
T PLN02958 113 RLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETK---YQLHAKEVVRTMDLSKYDGIVCVSG 177 (481)
T ss_pred EEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEecc---CccHHHHHHHHhhhcCCCEEEEEcC
Confidence 45555 46666666655 5777999999988877554 3466777887776777888887665
No 174
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=65.03 E-value=61 Score=25.62 Aligned_cols=59 Identities=15% Similarity=0.281 Sum_probs=40.6
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+|++-+.++ ..+.+.+.+.++++|. ++.+...-..++.-.++++.+.+.+++.+|...
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~ 63 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGY--KLILCNSDNDPEKEREYLEMLRQNQVDGIIAGT 63 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCC--eEEEecCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 6777765444 3446677788888885 455555445677777888888888888777754
No 175
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=64.59 E-value=39 Score=30.44 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=46.4
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
|-|.. +.+|.+..++..+..+++|......+.-+|+. |+++.++++.+++-|++.|
T Consensus 104 iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 104 VRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred EEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEE
Confidence 44433 67888999999999999999888888889976 5888889998888888764
No 176
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=64.22 E-value=52 Score=26.84 Aligned_cols=58 Identities=14% Similarity=0.225 Sum_probs=35.4
Q ss_pred eEEEEeccC--CCH----HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESD--SDL----PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~--SDl----~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+|++|+-+. .|- .+.+.+.+.+++.|+ ++.+.... .++...++++...+++++.||..
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy--~~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~ 64 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGI--EYKYVESK-SDADYEPNLEQLADAGYDLIVGV 64 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCC--eEEEEecC-CHHHHHHHHHHHHhCCCCEEEEc
Confidence 466777431 232 345566677778775 44444444 56666777777777778777765
No 177
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=64.21 E-value=39 Score=29.18 Aligned_cols=52 Identities=6% Similarity=0.008 Sum_probs=44.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
=..+|++.+.++.+..++.|....+.+..++|. |+.+.++++.+.+-|++.|
T Consensus 103 ~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i 155 (266)
T cd07944 103 FHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVF 155 (266)
T ss_pred cccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEE
Confidence 356899999999999999999888888888887 5888889998888888654
No 178
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=63.95 E-value=39 Score=29.26 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=47.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE--cCCC-CchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL--SPHQ-NRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVa--SAHR-tPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+.-|.-..||++.++++.+..++.|..+...+. .+.| +|+.+.++++.+.+-|++.| ..+-.
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i-~l~DT 171 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSI-CIKDM 171 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEE-EEcCC
Confidence 3444566789999999999999999987766553 2454 47889999999999888754 44433
No 179
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=63.95 E-value=17 Score=30.01 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=44.9
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeec--cCCC----CCCC------CCeEEEEeccCCCHH--H-HHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEE--NANG----DSTD------TPIVGIIMESDSDLP--V-MNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~SDl~--v-mekA~~vLeef 138 (185)
||+||..-.| +=.++.+...+++++|+|| ++.. +++. +++ .+++|..|-.+ . +++..+.|+++
T Consensus 6 NvVas~~l~~-~idL~~la~~~~n~~YePe~fpgli~R~~~P~~t~lIf~sGK-ivitGaks~~~~~~a~~~~~~~L~~~ 83 (174)
T cd00652 6 NIVATVNLGC-ELDLRKIALAARNAEYNPKRFPGVIMRLREPKTTALIFSSGK-MVITGAKSEEDAKLAARKYARILQKL 83 (174)
T ss_pred EEEEEEEcCC-ccCHHHHHhhCCCcEECCCccceEEEEcCCCcEEEEEECCCE-EEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 7888887777 6778888888999999996 3322 1111 122 35678555433 3 66778889999
Q ss_pred CCCe
Q 029926 139 GVPY 142 (185)
Q Consensus 139 GIpy 142 (185)
|.+.
T Consensus 84 g~~~ 87 (174)
T cd00652 84 GFPV 87 (174)
T ss_pred CCCc
Confidence 9764
No 180
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=63.94 E-value=34 Score=23.16 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEE
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIII 172 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVII 172 (185)
.+.=|.+.+|...|++.||+|+..=+. ..|+...++.+......+ .|||
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHHHhCCCCcCEEEE
Confidence 456688999999999999999777554 567777777654333333 4444
No 181
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=63.92 E-value=9.6 Score=35.63 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhCCCe-------------------------eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 127 VMNDAARTLSDFGVPY-------------------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 127 vmekA~~vLeefGIpy-------------------------EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+.+.+.+.|+.+||++ ...|...|.....+.++.++ ++|+|+++|...-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 4667888889888875 36678889888888888864 69999999998755
Q ss_pred c
Q 029926 182 S 182 (185)
Q Consensus 182 P 182 (185)
.
T Consensus 289 ~ 289 (364)
T PLN02616 289 R 289 (364)
T ss_pred C
Confidence 4
No 182
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=63.87 E-value=27 Score=30.06 Aligned_cols=55 Identities=11% Similarity=0.145 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec-CccCcCcCC
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD-GVEAHLSGT 184 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA-G~AAhLPGV 184 (185)
.+++.+.-+..|-+.|+.. .|||.++.+.+.+..++.|++.+.+.. -.+..+||.
T Consensus 20 p~eiveLa~~~~A~iEVNL--FyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L 75 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVNL--FYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGL 75 (178)
T ss_pred hHHHHHHHHHhCCCEEEEc--ccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCC
Confidence 4566777788888766655 899999999999999999998766653 234577774
No 183
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=63.81 E-value=28 Score=26.15 Aligned_cols=56 Identities=13% Similarity=0.163 Sum_probs=37.2
Q ss_pred eEEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMES--DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS--~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.|.|+.-+ +.+.+.+.+....|.+.|+..++.. . +.+.+-. ++++..|+..+|-+.
T Consensus 28 ~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~--~-~sl~kql---k~A~k~g~~~~iiiG 85 (121)
T cd00858 28 KVAVLPLVKRDELVEIAKEISEELRELGFSVKYDD--S-GSIGRRY---ARQDEIGTPFCVTVD 85 (121)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeC--C-CCHHHHH---HHhHhcCCCEEEEEC
Confidence 57777766 5667778888888888898877754 1 5555444 445577776555444
No 184
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=63.71 E-value=69 Score=25.40 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=33.1
Q ss_pred EEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 115 VGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 115 VaIIMGS~SDl---~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
|+||+.+.+|. ...+.+.+.+++.|. ++.+...-..++...++++...+++++.+|..+.
T Consensus 2 igvi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPDLENRSFARIAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEeccccCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 56666554441 122344445556554 4444555556666666776666666776666554
No 185
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.64 E-value=10 Score=34.01 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|...+.+.++.++ ++++|+++|.+.-++
T Consensus 170 VGkPla~lL~~~~----ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i~ 216 (282)
T PRK14180 170 VGKPVSQLLLNAK----ATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFIT 216 (282)
T ss_pred chHHHHHHHHHCC----CEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcCC
Confidence 3444445554333 5778889988888888764 699999999987654
No 186
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=63.47 E-value=10 Score=27.41 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=39.4
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeec--cCCC----CCCC------CCeEEEEeccCCCHHH---HHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEE--NANG----DSTD------TPIVGIIMESDSDLPV---MNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~SDl~v---mekA~~vLeef 138 (185)
||+||-+-.+ +=.++.+...+++++|+|| ++.. .+.. +++ .+++|..|-.+. +++....|+++
T Consensus 8 NIva~~~l~~-~idL~~la~~~~~~~YePe~fpgl~~r~~~p~~t~~IF~sGk-i~itGaks~~~~~~a~~~i~~~L~~~ 85 (86)
T PF00352_consen 8 NIVASFDLPF-EIDLEELAEELENVEYEPERFPGLIYRLRNPKATVLIFSSGK-IVITGAKSEEEAKKAIEKILPILQKL 85 (86)
T ss_dssp EEEEEEE-SS-EB-HHHHHHHSTTEEEETTTESSEEEEETTTTEEEEEETTSE-EEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEECCC-ccCHHHHHhhccCcEEeeccCCeEEEeecCCcEEEEEEcCCE-EEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 7788877777 7788899999999999999 3322 1111 223 356776554433 45555666666
Q ss_pred C
Q 029926 139 G 139 (185)
Q Consensus 139 G 139 (185)
|
T Consensus 86 ~ 86 (86)
T PF00352_consen 86 G 86 (86)
T ss_dssp T
T ss_pred C
Confidence 5
No 187
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=63.28 E-value=28 Score=31.50 Aligned_cols=77 Identities=14% Similarity=0.211 Sum_probs=55.9
Q ss_pred eeeeeccccchhhhhhhhhhhcC-CCceeeeccCCCCC---CCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc
Q 029926 73 IPVLASSNGSATSTRKDYSSVRE-PSTVFEEENANGDS---TDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILS 148 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ea~~~~~---~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS 148 (185)
+=|+.+.+.+- .+|+..+.... |.+.+++.+.++++ ....+|+|..|-..--..++++...|+++| ++.+...+
T Consensus 214 miVVGg~~SsN-T~kL~~i~~~~~~~t~~Ie~~~el~~~~l~~~~~VGitaGASTP~~li~eV~~~l~~~~-~~~~~~~~ 291 (298)
T PRK01045 214 VIVVGSKNSSN-SNRLREVAEEAGAPAYLIDDASEIDPEWFKGVKTVGVTAGASAPEWLVQEVIARLKELG-ATVVEEVE 291 (298)
T ss_pred EEEECCCCCcc-HHHHHHHHHHHCCCEEEECChHHCcHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhC-CCcceecC
Confidence 44566665554 56777677665 67888888888852 234579999999988899999999999996 55555555
Q ss_pred CCC
Q 029926 149 PHQ 151 (185)
Q Consensus 149 AHR 151 (185)
.+.
T Consensus 292 ~~~ 294 (298)
T PRK01045 292 GRE 294 (298)
T ss_pred ccc
Confidence 543
No 188
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=62.72 E-value=27 Score=30.28 Aligned_cols=66 Identities=17% Similarity=0.198 Sum_probs=43.9
Q ss_pred EEEEeccC--CCHHHHHHHHHHHHHhCCCeeEEEEc-------CCCCchHHHHHHHHHhhCCCeEEEEecCccCc
Q 029926 115 VGIIMESD--SDLPVMNDAARTLSDFGVPYEIKILS-------PHQNRKGALSYALSAKERGIKIIIVGDGVEAH 180 (185)
Q Consensus 115 VaIIMGS~--SDl~vmekA~~vLeefGIpyEvrVaS-------AHRtPe~l~ey~k~ae~~GikVIIAvAG~AAh 180 (185)
|+||.=|. ++.+..+++.+.|+++|....+.=.- +.-.-++.+++.+...+..++.|+++-|+-++
T Consensus 1 I~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred CEEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 34554332 34489999999999998864322111 12224566677777778889999999998543
No 189
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=62.69 E-value=68 Score=24.62 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=40.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
|+++.-+.++ ....+.+.+.++++|+ ++.+......|++..+.++.+.+++++.+|....-..
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~ 67 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGY--SVLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLD 67 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcc
Confidence 5555544322 2334566666777775 4455666677877888888888888888887766543
No 190
>PRK07109 short chain dehydrogenase; Provisional
Probab=62.62 E-value=68 Score=27.87 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=22.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
.++.+|+|..+ -+...+++.|-+-|. ++.++ -|+++.++++.+
T Consensus 8 ~k~vlITGas~--gIG~~la~~la~~G~--~Vvl~--~R~~~~l~~~~~ 50 (334)
T PRK07109 8 RQVVVITGASA--GVGRATARAFARRGA--KVVLL--ARGEEGLEALAA 50 (334)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEE--ECCHHHHHHHHH
Confidence 45777777766 445556666655553 33322 355555544443
No 191
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=61.50 E-value=35 Score=23.19 Aligned_cols=57 Identities=16% Similarity=0.076 Sum_probs=36.3
Q ss_pred eEEEEeccC---CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESD---SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~---SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.|.|+.-+. .+++.+.+....|...|+..++.. -.+.+.+- .+.++..|+..+|.+.
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~--~~~~~~k~---~~~a~~~g~~~~iiig 62 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDD--RERKIGKK---FREADLRGVPFAVVVG 62 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecC--CCcCHhHH---HHHHHhCCCCEEEEEC
Confidence 467776666 677888888888998898655533 23444444 4455577776555444
No 192
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=61.40 E-value=41 Score=32.13 Aligned_cols=64 Identities=13% Similarity=-0.030 Sum_probs=43.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC---CCCchHHHHHHHHHhhC---CCeEEEEecCcc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP---HQNRKGALSYALSAKER---GIKIIIVGDGVE 178 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSA---HRtPe~l~ey~k~ae~~---GikVIIAvAG~A 178 (185)
++.||+.... ....++..+.|+..|+.+...|... +++.+.+.+..+.+.+. ..+++||+-|++
T Consensus 211 k~~iV~d~~v-~~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGs 280 (542)
T PRK14021 211 KVALIHTQPV-QRHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGA 280 (542)
T ss_pred eEEEEECccH-HHHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChH
Confidence 5677765544 3467888899999998765555543 24555556555555444 489999999975
No 193
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=61.33 E-value=14 Score=29.56 Aligned_cols=59 Identities=19% Similarity=0.256 Sum_probs=36.6
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
..++|+++.= .+..+-+.... +-||++. ..... .+++++...++.+...|++|||++..
T Consensus 76 ~~~~Iavv~~-~~~~~~~~~~~---~ll~~~i--~~~~~-~~~~e~~~~i~~~~~~G~~viVGg~~ 134 (176)
T PF06506_consen 76 YGPKIAVVGY-PNIIPGLESIE---ELLGVDI--KIYPY-DSEEEIEAAIKQAKAEGVDVIVGGGV 134 (176)
T ss_dssp CTSEEEEEEE-SS-SCCHHHHH---HHHT-EE--EEEEE-SSHHHHHHHHHHHHHTT--EEEESHH
T ss_pred cCCcEEEEec-ccccHHHHHHH---HHhCCce--EEEEE-CCHHHHHHHHHHHHHcCCcEEECCHH
Confidence 3467888754 33333344433 4457744 44433 36999999999999999999998753
No 194
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=60.87 E-value=72 Score=25.57 Aligned_cols=17 Identities=12% Similarity=-0.035 Sum_probs=7.8
Q ss_pred CHHHHHHHHHHHHHhCC
Q 029926 124 DLPVMNDAARTLSDFGV 140 (185)
Q Consensus 124 Dl~vmekA~~vLeefGI 140 (185)
|.....+..+.|...++
T Consensus 42 ~~~~~~~~i~~l~~~~v 58 (271)
T cd06312 42 DVADMARLIEAAIAAKP 58 (271)
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 44444444444444443
No 195
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=60.84 E-value=40 Score=31.07 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=45.7
Q ss_pred CeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEE--E--Ec---CCCC-chHHHHHHHHHhhCCCe---EEEEecCcc
Q 029926 113 PIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIK--I--LS---PHQN-RKGALSYALSAKERGIK---IIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl---~vmekA~~vLeefGIpyEvr--V--aS---AHRt-Pe~l~ey~k~ae~~Gik---VIIAvAG~A 178 (185)
.++.||+.+.-.- +..++..+.|+.-|+++++. + +. .+++ ++.+.+..+.+.+.|++ ++||+-|++
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 3688888765543 44577778888778766522 2 22 3455 36677788877787786 999999985
Q ss_pred C
Q 029926 179 A 179 (185)
Q Consensus 179 A 179 (185)
.
T Consensus 111 v 111 (369)
T cd08198 111 V 111 (369)
T ss_pred H
Confidence 3
No 196
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=60.83 E-value=27 Score=24.95 Aligned_cols=55 Identities=11% Similarity=0.068 Sum_probs=38.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikV 170 (185)
+..+++=-+-.......+..+|+++|++..+.|++-+ .++..+.++.+.+.|.+|
T Consensus 6 ~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~ei 60 (123)
T PF01522_consen 6 KSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGHEI 60 (123)
T ss_dssp SEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT-EE
T ss_pred CEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHHHH
Confidence 3455555555577889999999999999999999875 555566777777788444
No 197
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=60.83 E-value=35 Score=29.76 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=41.5
Q ss_pred EEEEecc--CCCHHHHHHHHHHHHHhCCCeeEEEEc--CCC----Cc-hHHHHHHHHHhhCCCeEEEEecCccCc
Q 029926 115 VGIIMES--DSDLPVMNDAARTLSDFGVPYEIKILS--PHQ----NR-KGALSYALSAKERGIKIIIVGDGVEAH 180 (185)
Q Consensus 115 VaIIMGS--~SDl~vmekA~~vLeefGIpyEvrVaS--AHR----tP-e~l~ey~k~ae~~GikVIIAvAG~AAh 180 (185)
|+||.=| ..|.+..+++.+.|+++|....+.=.. .|. +| ++.+++.+..++..++.|++.-|+-+.
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~ 75 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGA 75 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-G
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccH
Confidence 5677666 568899999999999999754332111 111 23 345556666678889999999998543
No 198
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=60.65 E-value=29 Score=30.86 Aligned_cols=41 Identities=10% Similarity=0.234 Sum_probs=36.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCCch
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPHQNRK 154 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLee-fGIpyEvrVaSAHRtPe 154 (185)
+|++|+|+..|+-.+......|++ -++++.+-+.+-|+.++
T Consensus 2 ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~ 43 (365)
T TIGR03568 2 KICVVTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPE 43 (365)
T ss_pred eEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChh
Confidence 699999999999999999999987 47888999999999776
No 199
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=60.61 E-value=20 Score=34.54 Aligned_cols=68 Identities=16% Similarity=0.173 Sum_probs=46.4
Q ss_pred CeEEEEec-cCCCHHHHHHHHHHHHHhCCCeeEEEE-cCCCCchHHHHHHHHHhhCCCeEEEEecCccCc
Q 029926 113 PIVGIIME-SDSDLPVMNDAARTLSDFGVPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVGDGVEAH 180 (185)
Q Consensus 113 ~kVaIIMG-S~SDl~vmekA~~vLeefGIpyEvrVa-SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAh 180 (185)
.++.+++- .-+-++-.+.+.+.|++-||+|++.=- -.--|-..+.+-++.++++..+.||++-|+|+|
T Consensus 71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~ 140 (465)
T KOG3857|consen 71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAH 140 (465)
T ss_pred cceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchh
Confidence 45666653 345566788999999999999865311 122233334444555567779999999999987
No 200
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=60.47 E-value=51 Score=22.41 Aligned_cols=41 Identities=27% Similarity=0.339 Sum_probs=26.8
Q ss_pred hCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 138 FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 138 fGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
.|+++...+.. ..| ...+.+.+++.+++++|.++.....++
T Consensus 68 ~~~~~~~~~~~--~~~--~~~i~~~~~~~~~dlvvig~~~~~~~~ 108 (130)
T cd00293 68 AGVKVETVVLE--GDP--AEAILEAAEELGADLIVMGSRGRSGLR 108 (130)
T ss_pred CCCceEEEEec--CCC--HHHHHHHHHHcCCCEEEEcCCCCCccc
Confidence 57776666553 223 556666666778888888887666554
No 201
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=60.44 E-value=81 Score=24.70 Aligned_cols=58 Identities=10% Similarity=0.180 Sum_probs=29.3
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|+++..+.+| ..+.+.+.+.++++|+.. .+....... ...+.++.+..++++.+|..+
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~--~~~~~~~~~-~~~~~i~~~~~~~vdgiii~~ 62 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQP--LLINTDDDE-DLDAALRQLLQYRVDGVIVTS 62 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeE--EEEcCCCCH-HHHHHHHHHHHcCCCEEEEec
Confidence 5555554443 223445556666666543 333333333 444555555566666666544
No 202
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.44 E-value=13 Score=33.36 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+
T Consensus 169 VGkPla~lL~~~~----AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i 214 (282)
T PRK14182 169 VGKPMAMMLLERH----ATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELV 214 (282)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Confidence 3444444554333 5677789888888888864 69999999986544
No 203
>PRK00394 transcription factor; Reviewed
Probab=60.19 E-value=13 Score=30.96 Aligned_cols=66 Identities=14% Similarity=0.144 Sum_probs=43.3
Q ss_pred eeeeeccccchhhhhhhhhhhcC--CCceeeec--cCCC----CCCC------CCeEEEEeccCCCHHH---HHHHHHHH
Q 029926 73 IPVLASSNGSATSTRKDYSSVRE--PSTVFEEE--NANG----DSTD------TPIVGIIMESDSDLPV---MNDAARTL 135 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~SDl~v---mekA~~vL 135 (185)
-||+||..-.+ .-+++.+...+ ++++|+|| ++.. ++.. +++ .|++|+.|-.+. ++++...|
T Consensus 95 ~NiVas~~l~~-~i~L~~la~~~~~~~~~YePe~fPglvyR~~~pk~~~lIF~SGK-vvitGaks~~~~~~a~~~i~~~l 172 (179)
T PRK00394 95 QNIVASADLGV-ELNLNAIAIGLGLENIEYEPEQFPGLVYRLDDPKVVVLLFGSGK-LVITGAKSEEDAEKAVEKILEKL 172 (179)
T ss_pred EEEEEEEEcCC-eEcHHHHHHhcCcCCcEECcccCceEEEEecCCcEEEEEEcCCE-EEEEecCCHHHHHHHHHHHHHHH
Confidence 48899887666 77889998877 88999988 4433 1111 122 367888775543 44555667
Q ss_pred HHhCC
Q 029926 136 SDFGV 140 (185)
Q Consensus 136 eefGI 140 (185)
+++|.
T Consensus 173 ~~~g~ 177 (179)
T PRK00394 173 EELGL 177 (179)
T ss_pred HHcCC
Confidence 77775
No 204
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=60.02 E-value=18 Score=30.01 Aligned_cols=47 Identities=15% Similarity=0.124 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCCch-------HHHHHHHHHhhCCCeEEEE
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILSPHQNRK-------GALSYALSAKERGIKIIIV 173 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe-------~l~ey~k~ae~~GikVIIA 173 (185)
|.+.+++..+.|++ ..|+-|++.|=..+ ...++++...+.|+++||+
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 45666666666665 47999999996533 3466777776788999994
No 205
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=59.87 E-value=72 Score=26.54 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhC--CCeEEEE
Q 029926 130 DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER--GIKIIIV 173 (185)
Q Consensus 130 kA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~--GikVIIA 173 (185)
.+.+.++++|+ ++.+...+..++...++++.+.++ +++-||.
T Consensus 21 gi~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi 64 (305)
T cd06324 21 FMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIF 64 (305)
T ss_pred HHHHHHHhcCC--eEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEE
Confidence 34444444443 233334444444444444444444 4544443
No 206
>PRK13057 putative lipid kinase; Reviewed
Probab=59.62 E-value=37 Score=28.94 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
...+++...|++.|++|++... +.+....++++.. ..+++++|++-|
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~iiv~GG 59 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVIVGGG 59 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEEEECc
Confidence 4577888999999998665544 4567777777653 456787776554
No 207
>PLN00062 TATA-box-binding protein; Provisional
Probab=59.45 E-value=14 Score=30.93 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=54.3
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeec--cCCC----CCCC------CCeEEEEeccCC--CHH-HHHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEE--NANG----DSTD------TPIVGIIMESDS--DLP-VMNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~S--Dl~-vmekA~~vLeef 138 (185)
||+||..-.| +=.++.+....++++|+|| ++-. ++.. +++ .|++|..| |.. .+++..+.|+++
T Consensus 6 NvVas~~l~~-~idL~~la~~~~n~eYePe~fpgli~Rl~~Pk~t~lIF~SGK-iviTGaks~e~a~~a~~~~~~~L~~l 83 (179)
T PLN00062 6 NIVSTVNLDC-KLDLKKIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGK-MVCTGAKSEHDSKLAARKYARIIQKL 83 (179)
T ss_pred EEEEEEEcCC-cccHHHHHhhCCCCEECCccCcEEEEEeCCCcEEEEEECCCe-EEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 7888887777 7778888888889999988 3322 1111 123 35677555 443 467888899999
Q ss_pred CCCe-------eEEEEcC-CCCchHHHHHH
Q 029926 139 GVPY-------EIKILSP-HQNRKGALSYA 160 (185)
Q Consensus 139 GIpy-------EvrVaSA-HRtPe~l~ey~ 160 (185)
|++. .--|+|+ -..|=+|+.++
T Consensus 84 g~~~~~~~f~v~NIvas~~l~~~i~L~~la 113 (179)
T PLN00062 84 GFPAKFKDFKIQNIVGSCDVKFPIRLEGLA 113 (179)
T ss_pred CCCcCCCccEEEEEEEEEECCCcccHHHHH
Confidence 9853 2234554 33455556555
No 208
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=59.36 E-value=66 Score=23.33 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=40.6
Q ss_pred EEeccCCCHHHHHHHHHHHHHhC-CCe-------------------eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 117 IIMESDSDLPVMNDAARTLSDFG-VPY-------------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 117 IIMGS~SDl~vmekA~~vLeefG-Ipy-------------------EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+.|.-+-+..++.+...|..+| ++. -+-++|.....+++.+.++.++++|++|+.--.
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~ 81 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITN 81 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEEC
Confidence 35566666667777777777665 442 255667777778888888888888887764443
No 209
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=59.35 E-value=46 Score=31.84 Aligned_cols=84 Identities=15% Similarity=0.188 Sum_probs=52.5
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHH-HhCCCeeEEEEcCC
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLS-DFGVPYEIKILSPH 150 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLe-efGIpyEvrVaSAH 150 (185)
.+||+.+-|...|+-+..+...+... +++|-...+-......+.++++ +-++-.+...+++.
T Consensus 54 ~~Pivsa~M~~vt~~~lA~Ama~aGG-----------------iGfI~~~as~E~q~~~Irkvk~~~~gmi~dpvtV~pd 116 (505)
T PLN02274 54 SIPCVSSPMDTVTESDMAIAMAALGG-----------------IGIVHYNNTAEEQAAIVRKAKSRRVGFVSDPVVKSPS 116 (505)
T ss_pred CCCEeccCCcccchHHHHHHHHhCCC-----------------eEEEcCCCCHHHHHHHHHHhhcccccccCCCeeeCCC
Confidence 48999999999988776655544433 5555554454445555555553 33444567777888
Q ss_pred CCchHHHHHHHHHhhCCCeEEEEec
Q 029926 151 QNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 151 RtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
-+..++.+++. +.++..++.+.
T Consensus 117 ~tV~dA~~lm~---~~~~~~lpVvD 138 (505)
T PLN02274 117 STISSLDELKA---SRGFSSVCVTE 138 (505)
T ss_pred CcHHHHHHHHH---hcCCceEEEEe
Confidence 88888777653 44455555554
No 210
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.24 E-value=14 Score=33.41 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 170 VGkPla~lL~~~~----atVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 216 (297)
T PRK14186 170 VGKPLALMLLAAN----ATVTIAHSRTQDLASITRE-----ADILVAAAGRPNLIG 216 (297)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 4555555555443 5677778888888888865 699999999886554
No 211
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=59.23 E-value=29 Score=29.67 Aligned_cols=34 Identities=12% Similarity=0.119 Sum_probs=21.6
Q ss_pred CeEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEE
Q 029926 113 PIVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKIL 147 (185)
Q Consensus 113 ~kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrVa 147 (185)
+.|.|.+|+ ||. ....++.+.|.++.-++.+.|+
T Consensus 171 ~~iLi~~GG-~d~~~~~~~~l~~l~~~~~~~~i~vv 205 (279)
T TIGR03590 171 RRVLVSFGG-ADPDNLTLKLLSALAESQINISITLV 205 (279)
T ss_pred CeEEEEeCC-cCCcCHHHHHHHHHhccccCceEEEE
Confidence 468777775 555 4467888888776555444443
No 212
>PRK09739 hypothetical protein; Provisional
Probab=59.04 E-value=77 Score=25.58 Aligned_cols=59 Identities=7% Similarity=-0.026 Sum_probs=37.6
Q ss_pred CeEEEEeccCCC----HHHHHHHHHHHHHhCCCeeEEEEcCCC---------------------CchHHHHHHHHHhhCC
Q 029926 113 PIVGIIMESDSD----LPVMNDAARTLSDFGVPYEIKILSPHQ---------------------NRKGALSYALSAKERG 167 (185)
Q Consensus 113 ~kVaIIMGS~SD----l~vmekA~~vLeefGIpyEvrVaSAHR---------------------tPe~l~ey~k~ae~~G 167 (185)
.+|.||.||... ...++...+.|++-|. ++.+...+. .++++.++++...+
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~--~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 79 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGH--QVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLE-- 79 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHh--
Confidence 479999999865 4457777788887775 343443221 24566777776666
Q ss_pred CeEEEEec
Q 029926 168 IKIIIVGD 175 (185)
Q Consensus 168 ikVIIAvA 175 (185)
++.||-+.
T Consensus 80 AD~iV~~~ 87 (199)
T PRK09739 80 HDALVFVF 87 (199)
T ss_pred CCEEEEEC
Confidence 55555543
No 213
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=58.98 E-value=40 Score=30.82 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=42.1
Q ss_pred CeEEEEeccCC---CH------HHHHHHHHHHHHhCCCeeEEEEcCC-CCchHHHHHHHHHhhCCCeEEEEe
Q 029926 113 PIVGIIMESDS---DL------PVMNDAARTLSDFGVPYEIKILSPH-QNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 113 ~kVaIIMGS~S---Dl------~vmekA~~vLeefGIpyEvrVaSAH-RtPe~l~ey~k~ae~~GikVIIAv 174 (185)
++|+++.||.. .. ...+++.+.|++.|+ ++.....= .++++..+.++.+++.+++.+|..
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 70 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELPV--EVVDKPEVTGTPDEARKAAEEFNEANCDGLIVW 70 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCCc--eEEecCcccCCHHHHHHHHHHHhhcCCcEEEEc
Confidence 47999999988 33 344556666666644 55444433 488999999988888888888863
No 214
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=58.96 E-value=64 Score=26.05 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HhhCCCeEE
Q 029926 163 AKERGIKII 171 (185)
Q Consensus 163 ae~~GikVI 171 (185)
+.+.|+.|+
T Consensus 77 ~~~~giPvV 85 (268)
T cd06306 77 QVAASIPVI 85 (268)
T ss_pred HHHCCCCEE
Confidence 334444444
No 215
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=58.79 E-value=90 Score=24.77 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=16.9
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
.++.+|+|..+ .+...++..|-+.|.
T Consensus 7 ~~~vlItGasg--~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAAS--GIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCC
Confidence 46778888877 455556666666554
No 216
>smart00642 Aamy Alpha-amylase domain.
Probab=58.76 E-value=43 Score=27.03 Aligned_cols=49 Identities=27% Similarity=0.310 Sum_probs=35.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCC------------------------CCchHHHHHHHHHhhCCCeEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPH------------------------QNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAH------------------------RtPe~l~ey~k~ae~~GikVII 172 (185)
-|+.-+.+-.+.|+++|+.. +.+..++ =+++++.++++++.++|++|++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~-I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTA-IWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCE-EEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 46776666667899999863 1112221 2458899999999999999986
No 217
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=58.66 E-value=37 Score=27.48 Aligned_cols=38 Identities=13% Similarity=0.074 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
-...|..+++..+|+.+||+|+.+=+|-| ++...++.+
T Consensus 13 R~t~~~C~~ak~iL~~~~V~~~e~DVs~~--~~~~~EL~~ 50 (147)
T cd03031 13 RKTFEDCNNVRAILESFRVKFDERDVSMD--SGFREELRE 50 (147)
T ss_pred CCcChhHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHH
Confidence 34889999999999999999998888876 444444443
No 218
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=58.46 E-value=73 Score=25.68 Aligned_cols=66 Identities=11% Similarity=0.114 Sum_probs=39.7
Q ss_pred CCeEEEEeccCCCHHH----HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHh-hCCCeEEEEecCcc
Q 029926 112 TPIVGIIMESDSDLPV----MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK-ERGIKIIIVGDGVE 178 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~v----mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae-~~GikVIIAvAG~A 178 (185)
.++|+||+-|++-... ..-....|+++|++.....+ ..-.++.+.+.++++- .++++++|...|.+
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i-v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg 74 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI-VKDDIYQIRAQVSAWIADPDVQVILITGGTG 74 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE-cCCCHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 3578888665532222 22445568899986433222 4566677777666653 35689998885543
No 219
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=58.44 E-value=37 Score=27.79 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=46.2
Q ss_pred eEEEEeccCCC--------------HHHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHHHhhCCCeEEE
Q 029926 114 IVGIIMESDSD--------------LPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 114 kVaIIMGS~SD--------------l~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~ae~~GikVII 172 (185)
.+.-+.-+.|| ++.+.++.+..+++|....+..-. ..-+|+++.++++.+.+-|++.|.
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~ 155 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIY 155 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEE
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEE
Confidence 45666677899 889999999999999988777654 445688999999988887887653
No 220
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=58.33 E-value=69 Score=23.27 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=28.4
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 143 EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 143 EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
-+-++|-.+..+++.+.++.++++|++|+--.....+-|
T Consensus 50 ~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~l 88 (128)
T cd05014 50 VVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTL 88 (128)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCch
Confidence 355677778888899999999998888766555444433
No 221
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=58.09 E-value=45 Score=24.29 Aligned_cols=58 Identities=24% Similarity=0.316 Sum_probs=43.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.+.++....-|=+. +..+++.||+. -+|-.|-+-....+.+.++..+ +|..+.|+..|
T Consensus 11 ~~~~lvS~s~DGe~---ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 11 KIAALVSRSRDGEL---IARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CEEEEEccCcCHHH---HHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 35666655566555 56778999986 5666666667788888888776 77899998877
No 222
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=57.80 E-value=62 Score=23.75 Aligned_cols=49 Identities=20% Similarity=0.210 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCc
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAH 180 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAh 180 (185)
+++.+.++.-|++++..+.-- ..| .+.+++.+++.+++.||.++-+-..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~g-~~~--~~~I~~~a~~~~~dlIV~Gs~g~~~ 116 (146)
T cd01989 68 LPYRCFCSRKGVQCEDVVLED-DDV--AKAIVEYVADHGITKLVMGASSDNH 116 (146)
T ss_pred HHHHHHHhhcCCeEEEEEEeC-CcH--HHHHHHHHHHcCCCEEEEeccCCCc
Confidence 344444555677776666521 122 3445566666677777777654443
No 223
>PRK07063 short chain dehydrogenase; Provisional
Probab=57.70 E-value=98 Score=24.87 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=25.0
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHH
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 160 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~ 160 (185)
+.++++|+|+.+ -+...+++.|-+-|. +|+-..|+++.+.+..
T Consensus 6 ~~k~vlVtGas~--gIG~~~a~~l~~~G~----~vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 6 AGKVALVTGAAQ--GIGAAIARAFAREGA----AVALADLDAALAERAA 48 (260)
T ss_pred CCCEEEEECCCc--hHHHHHHHHHHHCCC----EEEEEeCCHHHHHHHH
Confidence 346788888876 445666666666663 2333455555554444
No 224
>PRK13059 putative lipid kinase; Reviewed
Probab=57.49 E-value=31 Score=29.70 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.|+..+....+++.+.|++-|+++.+....-+... +.+.++.+.+.+++|++-|
T Consensus 12 aG~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi~~GG 65 (295)
T PRK13059 12 SGENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYILIAGG 65 (295)
T ss_pred ccchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEEEECC
Confidence 35555566778889999999988766544433222 3333444566777765544
No 225
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=57.21 E-value=70 Score=27.61 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=46.2
Q ss_pred CCeEEEEeccCCCH---HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 112 TPIVGIIMESDSDL---PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 112 ~~kVaIIMGS~SDl---~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
..+|++++....+- .+.+.+.+.+++.| |++.+.+....++...++++...+++++.+|..+.
T Consensus 25 ~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~ 90 (330)
T PRK10355 25 EVKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPY 90 (330)
T ss_pred CceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 45788888654332 33455667778887 56777788888998889998888888988887653
No 226
>PRK12361 hypothetical protein; Provisional
Probab=57.08 E-value=28 Score=32.76 Aligned_cols=60 Identities=18% Similarity=0.207 Sum_probs=39.3
Q ss_pred CeEEEEe----ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIM----ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIM----GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.++.||. |+.......+++.+.|++. +++++.... .++...++++++.+++++++|++-|
T Consensus 243 ~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~-~~~~v~~t~---~~~~a~~la~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 243 KRAWLIANPVSGGGKWQEYGEQIQRELKAY-FDLTVKLTT---PEISAEALAKQARKAGADIVIACGG 306 (547)
T ss_pred CceEEEECCCCCCCcHHHHHHHHHHHHhcC-CceEEEECC---CCccHHHHHHHHHhcCCCEEEEECC
Confidence 3566654 6655667888898889884 555444443 2345677887777777888776544
No 227
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=56.98 E-value=15 Score=33.24 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+.+..+..|.+- ...|...|.....+.++.++ ++++|+++|.+.-+
T Consensus 179 VGkPla~lL~~~----~ATVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i 224 (299)
T PLN02516 179 VGLPVSLLLLKA----DATVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMI 224 (299)
T ss_pred chHHHHHHHHHC----CCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 344444444433 35677778888888888864 69999999996544
No 228
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=56.95 E-value=1e+02 Score=24.71 Aligned_cols=43 Identities=16% Similarity=0.060 Sum_probs=24.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHH
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 160 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~ 160 (185)
..++++|+|..+ .+...++..|-+-|. +|+...|+++.+.+..
T Consensus 8 ~~k~~lItGas~--giG~~ia~~L~~~G~----~vvl~~r~~~~~~~~~ 50 (254)
T PRK08085 8 AGKNILITGSAQ--GIGFLLATGLAEYGA----EIIINDITAERAELAV 50 (254)
T ss_pred CCCEEEEECCCC--hHHHHHHHHHHHcCC----EEEEEcCCHHHHHHHH
Confidence 346788888776 445566666666563 2333455555544443
No 229
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=56.83 E-value=58 Score=21.95 Aligned_cols=41 Identities=7% Similarity=0.125 Sum_probs=28.6
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
+.+..+- +.+.++.+.|++.||+|+.+=+ .+.|+...++.+
T Consensus 3 ly~~~~C-p~C~~ak~~L~~~~i~~~~~di--~~~~~~~~~~~~ 43 (72)
T TIGR02194 3 VYSKNNC-VQCKMTKKALEEHGIAFEEINI--DEQPEAIDYVKA 43 (72)
T ss_pred EEeCCCC-HHHHHHHHHHHHCCCceEEEEC--CCCHHHHHHHHH
Confidence 3344443 8999999999999999976544 455666555543
No 230
>PRK10329 glutaredoxin-like protein; Provisional
Probab=56.57 E-value=70 Score=22.80 Aligned_cols=41 Identities=12% Similarity=0.160 Sum_probs=29.0
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
+.+.... +.++.+...|++.||+|+..=+. ..|+...++..
T Consensus 5 lYt~~~C-p~C~~ak~~L~~~gI~~~~idi~--~~~~~~~~~~~ 45 (81)
T PRK10329 5 IYTRNDC-VQCHATKRAMESRGFDFEMINVD--RVPEAAETLRA 45 (81)
T ss_pred EEeCCCC-HhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHH
Confidence 3444444 99999999999999998765544 45666555543
No 231
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.49 E-value=36 Score=30.63 Aligned_cols=52 Identities=10% Similarity=0.116 Sum_probs=42.9
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ ++.-+++...+.++++||.+++.-+...-+.+++.+.++...+
T Consensus 36 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (284)
T PRK14177 36 LATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNL 88 (284)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 567777766 4456677788999999999999999999999999999987743
No 232
>PRK13761 hypothetical protein; Provisional
Probab=56.47 E-value=38 Score=30.50 Aligned_cols=100 Identities=20% Similarity=0.224 Sum_probs=60.5
Q ss_pred eeccccchhhhhhhhhhhcCC-Cceeeec-c--CCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC
Q 029926 76 LASSNGSATSTRKDYSSVREP-STVFEEE-N--ANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ 151 (185)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~p-~~~~~~e-a--~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR 151 (185)
||=--||| -|||...-. ..-..++ + +.+.-...| |.=+=|..-=+ ..+++.+.-+..|-+.|+.. .||
T Consensus 33 IAhGRGEa----FDYLlGEkT~~~A~~A~raAaA~LLlA~~P-VISVNGN~AAL-~p~eiveLa~~~~A~iEVNL--F~R 104 (248)
T PRK13761 33 IAHGRGEA----FDYLLGEKTTPSALEAERAAAALLLLAKHP-VISVNGNTAAL-VPEEIVELAEALNAKLEVNL--FYR 104 (248)
T ss_pred hhccCccH----HhHhcccCCcHHHHHHHHHHHHHHHhcCCC-eEEEcchHHhh-ChHHHHHHHHHhCCCEEEEe--ccC
Confidence 46667777 466654332 2212222 1 111122334 33334443322 35677777788888766655 899
Q ss_pred CchHHHHHHHHHhhCCCeEEEEecCccCcCcCC
Q 029926 152 NRKGALSYALSAKERGIKIIIVGDGVEAHLSGT 184 (185)
Q Consensus 152 tPe~l~ey~k~ae~~GikVIIAvAG~AAhLPGV 184 (185)
|+++.+.+.+..++.|++.+....- .+.+||.
T Consensus 105 T~eR~~~I~~~l~~~Ga~~vlG~~~-~~~ip~L 136 (248)
T PRK13761 105 TEERVEKIAEVLREHGAKEVLGTDE-DARIPGL 136 (248)
T ss_pred CHHHHHHHHHHHHHcCCceeeCCCC-cCcCCCC
Confidence 9999999999999999986554433 6777764
No 233
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=56.34 E-value=29 Score=28.62 Aligned_cols=52 Identities=19% Similarity=0.213 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCCchH-------HHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 125 LPVMNDAARTLSDFGVPYEIKILSPHQNRKG-------ALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 125 l~vmekA~~vLeefGIpyEvrVaSAHRtPe~-------l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
.+.+++..+.|++ ..|+-|++.|=..+. ..++++.+.+.|+++|| |.-.|.+
T Consensus 161 ~~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~Ii---G~H~Hv~ 219 (239)
T cd07381 161 LERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVI---GHHPHVL 219 (239)
T ss_pred HHHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEE---cCCCCcC
Confidence 4555555555655 389999999985543 46677776678899998 4444443
No 234
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=56.33 E-value=38 Score=31.51 Aligned_cols=78 Identities=13% Similarity=0.098 Sum_probs=53.8
Q ss_pred eeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCC-------H--HHHHHHHHHHHHhCCCee
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSD-------L--PVMNDAARTLSDFGVPYE 143 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SD-------l--~vmekA~~vLeefGIpyE 143 (185)
+||..|- -.-|+||+....+.+++-- +-.++.|+|+.|+.+- . ..+.-+.+.|++-|+++
T Consensus 132 lpi~Gs~-h~Vt~~~lAa~~e~~~~~~---------p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~- 200 (329)
T COG3660 132 LPINGSP-HNVTSQRLAALREAFKHLL---------PLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSF- 200 (329)
T ss_pred eeccCCC-CcccHHHhhhhHHHHHhhC---------CCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceE-
Confidence 4554443 3467999999888777542 2345789999999763 2 22445566777788864
Q ss_pred EEEEcCCCCchHHHHHHHH
Q 029926 144 IKILSPHQNRKGALSYALS 162 (185)
Q Consensus 144 vrVaSAHRtPe~l~ey~k~ 162 (185)
-+.-.-|||+.+...+++
T Consensus 201 -lisfSRRTp~~~~s~l~~ 218 (329)
T COG3660 201 -LISFSRRTPDTVKSILKN 218 (329)
T ss_pred -EEEeecCCcHHHHHHHHh
Confidence 445578999999999975
No 235
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.30 E-value=17 Score=32.54 Aligned_cols=47 Identities=17% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+.
T Consensus 170 VGkPla~lL~~~~----AtVt~chs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 216 (278)
T PRK14172 170 VGKPVAQLLLNEN----ATVTICHSKTKNLKEVCKK-----ADILVVAIGRPKFID 216 (278)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccC
Confidence 4556666665443 5677889777788888765 699999999977553
No 236
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.29 E-value=38 Score=30.43 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=42.5
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| ..+++...+.++++||.+++.-+++.-+.+++.+.++...+
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (284)
T PRK14190 35 LAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNA 87 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46666776655 44567778999999999999999999999999999987644
No 237
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=56.10 E-value=82 Score=23.54 Aligned_cols=46 Identities=20% Similarity=0.201 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEEEecC
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDG 176 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVIIAvAG 176 (185)
.+++...|...+..+++..... ++...++....+.+.. ++||++-|
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GG 63 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGG 63 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEES
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcC
Confidence 3788999999999988887765 4444444432333333 55555544
No 238
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=55.72 E-value=26 Score=22.86 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=24.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchH
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKG 155 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~ 155 (185)
.-+.++++...|++.|++|+...+.....+++
T Consensus 8 ~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~ 39 (73)
T cd03059 8 DDVYSHRVRIVLAEKGVSVEIIDVDPDNPPED 39 (73)
T ss_pred CChhHHHHHHHHHHcCCccEEEEcCCCCCCHH
Confidence 34678899999999999999887765433333
No 239
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=55.65 E-value=63 Score=25.60 Aligned_cols=58 Identities=19% Similarity=0.170 Sum_probs=34.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|=|+.| -|.+..++....|+.+|.+..+=--.+.-...-++++.+.+++-++-|++.-
T Consensus 2 VFIvhg--~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~T 59 (125)
T PF10137_consen 2 VFIVHG--RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFT 59 (125)
T ss_pred EEEEeC--CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEc
Confidence 444444 7889999999999999886543333333333334444444445555666543
No 240
>PRK06940 short chain dehydrogenase; Provisional
Probab=55.61 E-value=59 Score=27.00 Aligned_cols=19 Identities=16% Similarity=0.232 Sum_probs=11.3
Q ss_pred eEEEEeccCCCHHHHHHHHHHH
Q 029926 114 IVGIIMESDSDLPVMNDAARTL 135 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vL 135 (185)
+++||+|+ | -+...+++.|
T Consensus 3 k~~lItGa-~--gIG~~la~~l 21 (275)
T PRK06940 3 EVVVVIGA-G--GIGQAIARRV 21 (275)
T ss_pred CEEEEECC-C--hHHHHHHHHH
Confidence 46777775 4 4555555555
No 241
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=55.30 E-value=19 Score=32.47 Aligned_cols=47 Identities=19% Similarity=0.228 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|.+.-+.
T Consensus 169 VGkPla~lL~~~~----atVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i~ 215 (284)
T PRK14170 169 VGKPVAQLLLNEN----ATVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFVK 215 (284)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccC
Confidence 4556666665443 4666678887888888875 699999999987654
No 242
>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors
Probab=55.18 E-value=69 Score=26.50 Aligned_cols=61 Identities=18% Similarity=0.156 Sum_probs=38.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+|+||.-++.....++...+.+++.|+........ ...+....++...++.+.++||...
T Consensus 128 ~~vaii~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~--~~~~d~~~~l~~i~~~~~d~Vi~~~ 188 (324)
T cd06368 128 RKFVYIYDSDEGLLRLQELLDALSPKGIQVTVRRLD--DDTDMYRPLLKEIKREKERRIILDC 188 (324)
T ss_pred CEEEEEECCcHhHHHHHHHHHhhccCCceEEEEEec--CCchHHHHHHHHHhhccCceEEEEC
Confidence 579988754433344566666677777765544432 2223577788788888888877654
No 243
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=54.43 E-value=21 Score=31.22 Aligned_cols=32 Identities=13% Similarity=0.064 Sum_probs=25.1
Q ss_pred CCCeEEEEeccCCC-----HHHHHHHHHHHHHhCCCe
Q 029926 111 DTPIVGIIMESDSD-----LPVMNDAARTLSDFGVPY 142 (185)
Q Consensus 111 ~~~kVaIIMGS~SD-----l~vmekA~~vLeefGIpy 142 (185)
|+.+|+|++|+.|+ +..++.+.+.|++.|.+.
T Consensus 2 ~~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~~ 38 (333)
T PRK01966 2 MKMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYEV 38 (333)
T ss_pred CCcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCEE
Confidence 35689999999999 456778888888877643
No 244
>PRK09701 D-allose transporter subunit; Provisional
Probab=54.39 E-value=1.2e+02 Score=25.58 Aligned_cols=65 Identities=11% Similarity=0.112 Sum_probs=37.2
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 112 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 112 ~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
...|++|....+| ....+.+.+.+++.|+...+.....-..++...++++....++++.||..+.
T Consensus 24 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3468888866555 2334566667777775444322112234555566666666667776666543
No 245
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=54.38 E-value=86 Score=27.22 Aligned_cols=47 Identities=6% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCCCc-hHHHHHHHHHhhCCCeEE
Q 029926 125 LPVMNDAARTLSDFGVPYEIKILSPHQNR-KGALSYALSAKERGIKII 171 (185)
Q Consensus 125 l~vmekA~~vLeefGIpyEvrVaSAHRtP-e~l~ey~k~ae~~GikVI 171 (185)
++.+.++.+..++.|+...+.+.-+.|+| +.+.++++.+.+-|++.|
T Consensus 111 ~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (262)
T cd07948 111 IESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRV 158 (262)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 34455566777788999999998899997 888889988888788754
No 246
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=54.24 E-value=44 Score=21.43 Aligned_cols=37 Identities=16% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCc
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 153 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtP 153 (185)
|+|+.-..++........+.|...+ +++.+++.+-.+
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~ 37 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAG--AEVDVVSPDGGP 37 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCC--CeEEEEcCCCCc
Confidence 4566667777777777777887777 566666666554
No 247
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.94 E-value=43 Score=30.30 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=43.0
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ ++.-+++...+.++++||.++..-.++.-+.+++.+.++...+
T Consensus 35 LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (297)
T PRK14186 35 LAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQ 87 (297)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466667755 4556678888999999999999999999999999999987744
No 248
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=53.86 E-value=42 Score=22.34 Aligned_cols=42 Identities=26% Similarity=0.295 Sum_probs=33.0
Q ss_pred cCCCHHHHHHHHHHHHHhCCC--eeEEEEcCCCCchHHHHHHHH
Q 029926 121 SDSDLPVMNDAARTLSDFGVP--YEIKILSPHQNRKGALSYALS 162 (185)
Q Consensus 121 S~SDl~vmekA~~vLeefGIp--yEvrVaSAHRtPe~l~ey~k~ 162 (185)
+.+.=|.++++...|++++++ |++.-+..+..++.+.+++..
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~ 48 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEE 48 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHH
Confidence 346678999999999999999 877777777777777666543
No 249
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.31 E-value=21 Score=32.08 Aligned_cols=47 Identities=23% Similarity=0.193 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+- ...|...|+..+.+.++.++ ++++|+++|...-+.
T Consensus 169 VGkPla~lL~~~----~atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 215 (282)
T PRK14166 169 VGRPMATMLLNA----GATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLLR 215 (282)
T ss_pred chHHHHHHHHHC----CCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccC
Confidence 455555555543 36777889888888888864 699999999876553
No 250
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=53.28 E-value=50 Score=28.82 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILS-------------PHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaS-------------AHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.-+.+.+.+.++.+++.|||+++-++- ..|-|+ ..+++++..+.|.++.+-+.
T Consensus 26 ~~s~~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~ 91 (303)
T cd06592 26 DINQETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVH 91 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCC-HHHHHHHHHHCCCeEEEEEC
Confidence 455677888999999999999887774 235565 78888889999999887654
No 251
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.22 E-value=85 Score=25.63 Aligned_cols=57 Identities=12% Similarity=0.180 Sum_probs=24.9
Q ss_pred EEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 115 VGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 115 VaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
|++|..+.++ ..+.+.+.+.++++|+... +.. .--.++...++++.+-..+++.||.
T Consensus 2 i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~~dgiii 62 (294)
T cd06316 2 AAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVV--ATTDAQFDPAKQVADIETTISQKPDIIIS 62 (294)
T ss_pred eEEEecCCCChHHHHHHHHHHHHHHHcCCEEE--EecCCCCCHHHHHHHHHHHHHhCCCEEEE
Confidence 5555544332 2334444555566654332 221 1224444445554444444554444
No 252
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=53.17 E-value=47 Score=27.74 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=38.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHH-HHhCCCeeEEEEcCC---CCchHHHHHHHHHhhCCCeEEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTL-SDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vL-eefGIpyEvrVaSAH---RtPe~l~ey~k~ae~~GikVIIA 173 (185)
+|++|+|=..=-.-+.++...| .+.....++.|-++. +.|+.++++.+..+. .++||+
T Consensus 2 r~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~ 63 (164)
T PF11965_consen 2 RFVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFG 63 (164)
T ss_pred EEEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEe
Confidence 4566666544444445555555 455777788887755 999888888876655 688876
No 253
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=53.06 E-value=60 Score=29.02 Aligned_cols=51 Identities=6% Similarity=0.153 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCC-------------CCch-HHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILSPH-------------QNRK-GALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaSAH-------------RtPe-~l~ey~k~ae~~GikVIIAv 174 (185)
+.+.+++.++.+++.+||+|+-++-.+ |-|+ +..+++++.+++|++|++-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 456678888999999999999888744 5565 34777888889999887754
No 254
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=52.93 E-value=79 Score=27.79 Aligned_cols=64 Identities=14% Similarity=0.059 Sum_probs=48.7
Q ss_pred EEEEecc-CCCHHHHHHHHHHH-HHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 115 VGIIMES-DSDLPVMNDAARTL-SDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 115 VaIIMGS-~SDl~vmekA~~vL-eefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
|.|--|. .|+.+.--.++..| ++.|++.-.++..-.++...+.+++..+.+.|++=|.|..|-.
T Consensus 33 vsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~ 98 (281)
T TIGR00677 33 IDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDP 98 (281)
T ss_pred EEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4444443 34555544455555 5889999999999999999999999999999998888888865
No 255
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=52.72 E-value=78 Score=25.12 Aligned_cols=50 Identities=16% Similarity=0.292 Sum_probs=23.7
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEE
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVII 172 (185)
.+..|.....+..+.|...++ |--|+.++. ++...+.++.+.+.|+.|+.
T Consensus 37 ~~~~~~~~~~~~i~~l~~~~v--dgiii~~~~-~~~~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 37 DAKNDVATQLSQVENFIAQGV--DAIIVVPVD-TAATAPIVKAANAAGIPLVY 86 (272)
T ss_pred CCCCCHHHHHHHHHHHHHcCC--CEEEEecCc-hhhhHHHHHHHHHCCCeEEE
Confidence 344566555555555555554 444443332 22233344444455555443
No 256
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=52.43 E-value=27 Score=30.21 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=42.9
Q ss_pred eeeeeccccchhhhhhhhhhhcCCC--ceeeec--cCCCCCCCCCeEE---------EEeccCCCHHH---HHHHHHHHH
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPS--TVFEEE--NANGDSTDTPIVG---------IIMESDSDLPV---MNDAARTLS 136 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~e--a~~~~~~~~~kVa---------IIMGS~SDl~v---mekA~~vLe 136 (185)
=||+||-+-.- +-++|.+.--+.. .+|+|| ++-.-....|+|+ |++|.+|-.+. .+++.+.|+
T Consensus 102 QNIVaSadL~~-~lnL~~iA~~lg~e~~eYEPEqFPGLVYRl~~P~VV~LiF~SGK~ViTGaK~~ed~~~Av~~i~~~L~ 180 (185)
T COG2101 102 QNIVASADLGV-ELNLNAIAIGLGLENIEYEPEQFPGLVYRLDEPRVVLLLFGSGKLVITGAKSEEDAEQAVEKIQSRLE 180 (185)
T ss_pred EEEEEEeccCc-cccHHHHHHhccccccccccccCCeeEEEcCCCCEEEEEecCCcEEEecCCCHHHHHHHHHHHHHHHH
Confidence 37888888776 8888888887775 888888 4443222234432 56776654332 456666777
Q ss_pred HhCC
Q 029926 137 DFGV 140 (185)
Q Consensus 137 efGI 140 (185)
++|.
T Consensus 181 elgl 184 (185)
T COG2101 181 ELGL 184 (185)
T ss_pred Hhcc
Confidence 7763
No 257
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=52.42 E-value=36 Score=25.37 Aligned_cols=44 Identities=14% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
+...+.+++.+|+ ++-|+-+.-..+.+.++++.+++.|++|.++
T Consensus 131 ~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 131 DDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 3455777888888 7777777777899999999999999998764
No 258
>PRK12757 cell division protein FtsN; Provisional
Probab=52.24 E-value=93 Score=27.95 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=52.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-------EE-EcCCCCchHHHHHHHHHhhCCC-eEEEEecCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEI-------KI-LSPHQNRKGALSYALSAKERGI-KIIIVGDGV 177 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEv-------rV-aSAHRtPe~l~ey~k~ae~~Gi-kVIIAvAG~ 177 (185)
...|=.||-+|.+-++....-|...|++..+ || ++...+.+...+..+..+..|+ ..||..+|+
T Consensus 184 ~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 184 RWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 4678899999999999999999988876432 22 5677789999999999988888 888887774
No 259
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=52.18 E-value=53 Score=26.72 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=38.4
Q ss_pred CCCeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEEEEcCCCC--chHHHHHHH
Q 029926 111 DTPIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIKILSPHQN--RKGALSYAL 161 (185)
Q Consensus 111 ~~~kVaIIMGS~SD--l~vmekA~~vLeefGIpyEvrVaSAHRt--Pe~l~ey~k 161 (185)
..|.|+||+=.+-+ -.-.++|.+.|+.-|+. ++..+|++.. -+++.+|++
T Consensus 89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~-~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVK-EIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CCCEEEEEECccCccchhhHHHHHHHHHHcCCC-CeEEEECCCCcCHHHHHHHHh
Confidence 35789999977666 77889999999999998 5677777754 455666554
No 260
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=52.05 E-value=72 Score=27.55 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
.+.-+..+.+++|++.-.++..-.|+...+.+++..+...|++=+.+..|-.
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~ 97 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDP 97 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 4445555555889999999999999999999999989999998777777743
No 261
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.39 E-value=23 Score=31.86 Aligned_cols=47 Identities=15% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|...-+.
T Consensus 168 VGkPla~lL~~~~----atVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~ 214 (282)
T PRK14169 168 VGRPLAGLMVNHD----ATVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIG 214 (282)
T ss_pred chHHHHHHHHHCC----CEEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 4556666665544 5666778777778888764 699999999876543
No 262
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=51.29 E-value=1.3e+02 Score=25.14 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=42.5
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCC--CchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQ--NRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHR--tPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.+|+++...+. ....++...+.+++.|+.....+. .-. +......+++..+..+.+|||....
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~ 226 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEA-IPPSSTEEDIKRILKKLKSSTARVIVVFGD 226 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEE-ccCCCcHHHHHHHHHHHHhCCCcEEEEEeC
Confidence 46888875433 345677778888999987644332 122 2467778888888888888887654
No 263
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.23 E-value=24 Score=31.63 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++++|+++|...-++
T Consensus 170 VG~Pla~lL~~~~----atVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i~ 216 (284)
T PRK14190 170 VGKPVGQLLLNEN----ATVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLIT 216 (284)
T ss_pred cHHHHHHHHHHCC----CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCC
Confidence 4455555554433 4566678888888887764 699999999876543
No 264
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=51.21 E-value=1.3e+02 Score=24.47 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=17.7
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
..++++|+|..+ .+...+...|-+-|.
T Consensus 9 ~~k~vlVtGas~--giG~~ia~~l~~~G~ 35 (278)
T PRK08277 9 KGKVAVITGGGG--VLGGAMAKELARAGA 35 (278)
T ss_pred CCCEEEEeCCCc--hHHHHHHHHHHHCCC
Confidence 346788888876 355666666666665
No 265
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.10 E-value=58 Score=29.33 Aligned_cols=52 Identities=8% Similarity=0.113 Sum_probs=42.2
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| .-+++...+.++++||.+++.-+++.-+.+++.+.++...+
T Consensus 35 La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~ 87 (296)
T PRK14188 35 LAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNA 87 (296)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46666676544 44577788999999999999999999999999999987744
No 266
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=51.05 E-value=46 Score=27.83 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCC-------chHHHHHHHHHhhCCCeEEEE
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQN-------RKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRt-------Pe~l~ey~k~ae~~GikVIIA 173 (185)
+.+.+..+++.=..|+-|++.|=. .++..+++..+-+.|+++||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 556666666665689999999987 567778888888899999995
No 267
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=50.98 E-value=1.1e+02 Score=25.95 Aligned_cols=51 Identities=10% Similarity=0.140 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHH-hCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 125 LPVMNDAARTLSD-FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 125 l~vmekA~~vLee-fGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
...+.++.+.+++ .++|.-+++... -++++..++++.+++.|++.+.+..+
T Consensus 147 ~~~~~eiv~~vr~~~~~pv~vKl~~~-~~~~~~~~~a~~l~~~Gad~i~~~~~ 198 (289)
T cd02810 147 PEAVANLLKAVKAAVDIPLLVKLSPY-FDLEDIVELAKAAERAGADGLTAINT 198 (289)
T ss_pred HHHHHHHHHHHHHccCCCEEEEeCCC-CCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 3333343333332 245555554432 23445566666666666666665543
No 268
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=50.83 E-value=1.4e+02 Score=24.59 Aligned_cols=57 Identities=14% Similarity=0.079 Sum_probs=35.9
Q ss_pred eEEEEeccCCC----HHHHHHHHHHHHHhCCCeeEEEEcCCC-----------CchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSD----LPVMNDAARTLSDFGVPYEIKILSPHQ-----------NRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SD----l~vmekA~~vLeefGIpyEvrVaSAHR-----------tPe~l~ey~k~ae~~GikVIIAv 174 (185)
+|.+|.||.+- ...++.+.+.|++-|++++ ++..+. .++.+.++.+..++ ++.||-+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~--~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~ 73 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVY--HWNLQNFAPEDLLYARFDSPALKTFTEQLAQ--ADGLIVA 73 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEE--EEEccCCChHHHHhccCCCHHHHHHHHHHHH--CCEEEEE
Confidence 69999999876 4566777788887786553 332222 13366666666655 4555544
No 269
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.73 E-value=88 Score=27.68 Aligned_cols=53 Identities=9% Similarity=0.062 Sum_probs=42.1
Q ss_pred eEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhC
Q 029926 114 IVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER 166 (185)
Q Consensus 114 kVaIIMGS~SDl~-vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~ 166 (185)
.+.|..|.+.+-. +++--...++++||++++.-.+++-+++++.++++...+.
T Consensus 36 L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 36 LATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4666677665444 4556677789999999999999999999999999887655
No 270
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=50.29 E-value=1.2e+02 Score=24.29 Aligned_cols=61 Identities=26% Similarity=0.224 Sum_probs=42.8
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC-CCCchHHHHHHHHHhhCCCeEE
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSA-HRtPe~l~ey~k~ae~~GikVI 171 (185)
..++|.|+.|+-.-=.-.--++..|.+.|++.++..... .+..+......+.+++-|.+++
T Consensus 24 ~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 85 (169)
T PF03853_consen 24 KGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKII 85 (169)
T ss_dssp TT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEE
T ss_pred CCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEe
Confidence 456899999999888888899999999999877755653 3445555555666666665544
No 271
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.15 E-value=56 Score=29.50 Aligned_cols=52 Identities=13% Similarity=0.188 Sum_probs=43.3
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| .-+++...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 34 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (295)
T PRK14174 34 LTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNN 86 (295)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57778887654 45577888999999999999999999999999999987744
No 272
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=50.08 E-value=47 Score=26.63 Aligned_cols=44 Identities=16% Similarity=0.133 Sum_probs=36.9
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHH
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA 163 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~a 163 (185)
|.||+- .+.+.+.++++++.=.|++.-++||++.+++.+.+++.
T Consensus 3 ILGsTG--SIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 3 ILGSTG--SIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREF 46 (129)
T ss_dssp EESTTS--HHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHH
T ss_pred EEcCCc--HHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHh
Confidence 445443 58899999999998889999999999999999888765
No 273
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=49.94 E-value=65 Score=25.33 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=35.3
Q ss_pred EeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCCc--hHHHHHHHHHhhCCC
Q 029926 118 IMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNR--KGALSYALSAKERGI 168 (185)
Q Consensus 118 IMGS~SDl~-vmekA~~vLeefGIpyEvrVaSAHRtP--e~l~ey~k~ae~~Gi 168 (185)
++|...+.+ ...++.+.|.+.|++..+++.--.-+. ++++++++..++.|.
T Consensus 131 ~~g~~~~~~~~~~~~i~~l~~~gi~~~i~~~v~~~~~~~~ei~~~~~~l~~~~~ 184 (191)
T TIGR02495 131 LYGLEKNGSNNILKSLEILLRSGIPFELRTTVHRGFLDEEDLAEIATRIKENGT 184 (191)
T ss_pred HHCCCCchHHHHHHHHHHHHHcCCCEEEEEEEeCCCCCHHHHHHHHHHhccCCc
Confidence 445554554 677888899999999888866533333 467788888777663
No 274
>PRK06139 short chain dehydrogenase; Provisional
Probab=49.83 E-value=1e+02 Score=27.05 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=16.2
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecCcc
Q 029926 151 QNRKGALSYALSAKE--RGIKIIIVGDGVE 178 (185)
Q Consensus 151 RtPe~l~ey~k~ae~--~GikVIIAvAG~A 178 (185)
..++.++++++..++ .+++++|-.||..
T Consensus 66 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~ 95 (330)
T PRK06139 66 TDADQVKALATQAASFGGRIDVWVNNVGVG 95 (330)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcC
Confidence 345555555544433 3468888888753
No 275
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.82 E-value=57 Score=29.40 Aligned_cols=52 Identities=10% Similarity=0.197 Sum_probs=43.1
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.+++...++.-+.+++.+.++...+
T Consensus 32 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 84 (287)
T PRK14173 32 LRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNA 84 (287)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777777655 45577888999999999999999999999999999987644
No 276
>PRK06455 riboflavin synthase; Provisional
Probab=49.81 E-value=1.1e+02 Score=25.73 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=43.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC--CCe-eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFG--VPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefG--Ipy-EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+|+|+-..=++....+.|.+.|+++| +++ .++|=++.=.|-...++++ ..+++.+||.
T Consensus 2 ~kigIV~s~fn~~~L~~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~---~~~yDaVIaL 63 (155)
T PRK06455 2 MKIGIADTTFARVDMGSAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIE---EEGCDIVMAL 63 (155)
T ss_pred cEEEEEEEecchHHHHHHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHh---cCCCCEEEEe
Confidence 479999999999888999999999977 333 3345556666666666654 4568888875
No 277
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=49.71 E-value=21 Score=29.69 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=36.6
Q ss_pred eeeeeccccchhhhhhhhhhhcCCCceeeec--cCCC----CCCC------CCeEEEEeccCCCHHHHH
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEE--NANG----DSTD------TPIVGIIMESDSDLPVMN 129 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e--a~~~----~~~~------~~kVaIIMGS~SDl~vme 129 (185)
-||+||-.-.+ .-+++.+...+++++|+|| ++.. ++.. +++ .+++|+.|-.+.-+
T Consensus 96 ~NIVas~~l~~-~i~L~~la~~~~~~~YePe~fpglvyR~~~pk~~~lIF~SGK-vvitGaks~~~~~~ 162 (174)
T cd04518 96 QNIVASADLGR-EVNLDAIAIGLPNAEYEPEQFPGLVYRLDEPKVVLLLFSSGK-MVITGAKSEEDAKR 162 (174)
T ss_pred EEEEEEEEcCC-ccCHHHHHhhCCCCccCcccCceEEEEecCCcEEEEEeCCCE-EEEEecCCHHHHHH
Confidence 38899877666 7789999988999999988 4433 1111 122 46788877544433
No 278
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=49.59 E-value=46 Score=31.50 Aligned_cols=52 Identities=10% Similarity=-0.085 Sum_probs=48.0
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC-CCeeEEEEcCCCCchHHHHHHHHHh
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFG-VPYEIKILSPHQNRKGALSYALSAK 164 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefG-IpyEvrVaSAHRtPe~l~ey~k~ae 164 (185)
.+|++|.|-.-|+-.|......|++-+ ++.-+-+.+-||.++-+..|.+..+
T Consensus 4 ~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~ 56 (383)
T COG0381 4 LKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG 56 (383)
T ss_pred eEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC
Confidence 489999999999999999999999998 9999999999999999999987654
No 279
>PRK05876 short chain dehydrogenase; Provisional
Probab=49.55 E-value=1.2e+02 Score=25.34 Aligned_cols=26 Identities=12% Similarity=0.059 Sum_probs=14.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
+.++++|+|..+-+ ....++.|-+-|
T Consensus 5 ~~k~vlVTGas~gI--G~ala~~La~~G 30 (275)
T PRK05876 5 PGRGAVITGGASGI--GLATGTEFARRG 30 (275)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCC
Confidence 34567777776643 444555555545
No 280
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=49.37 E-value=31 Score=22.63 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
+.+.++...|++.|++|+...+..........+|.+
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~ 45 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLK 45 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHh
Confidence 457789999999999999988865443333344443
No 281
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=49.36 E-value=48 Score=27.19 Aligned_cols=61 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred CCeEEEEeccCCCH---HHHHHHHHHHHHhCCC-e---eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 112 TPIVGIIMESDSDL---PVMNDAARTLSDFGVP-Y---EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 112 ~~kVaIIMGS~SDl---~vmekA~~vLeefGIp-y---EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
..+|+||.+.-.+. ...+.|.+.|++.|++ . .+.|-+|-=.|-....+++ .+.++-+||..
T Consensus 12 ~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavIalG 79 (154)
T PRK00061 12 GLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE---SGKYDAVIALG 79 (154)
T ss_pred CCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHH---cCCCCEEEEEe
Confidence 35899999999988 7789999999999975 2 3445566666666666654 35588888754
No 282
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=49.26 E-value=86 Score=28.61 Aligned_cols=62 Identities=10% Similarity=0.142 Sum_probs=51.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHh---CCCeeEEEEcCCCCch-----------HHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDF---GVPYEIKILSPHQNRK-----------GALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeef---GIpyEvrVaSAHRtPe-----------~l~ey~k~ae~~GikVIIAvA 175 (185)
...+|=|=..|.+.+++..+.++.+ |....+.++-.|..++ ++.+|.+..++.|+.|.|--.
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~ 327 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQ 327 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 3677888888889999999999988 5578999999998754 378888888899999988543
No 283
>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita
Probab=49.00 E-value=1.1e+02 Score=26.31 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=40.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC--CCeeEEEE-cCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFG--VPYEIKIL-SPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefG--IpyEvrVa-SAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+|+||.-++.+...++...+.+++.| +.+...-. +.. .-+.+...++..++.+.++||..
T Consensus 127 k~vaii~~~~~~~~~~~~~~~~~~~~g~~i~v~~~~~~~~~-~~~d~~~~L~~ik~~~~~~iil~ 190 (382)
T cd06380 127 RKVVYLYDSDRGLLRLQQLLDYLREKDNKWQVTARRVDNVT-DEEEFLRLLEDLDRRKEKRIVLD 190 (382)
T ss_pred eEEEEEECCCcchHHHHHHHHHHhccCCceEEEEEEecCCC-cHHHHHHHHHHhhcccceEEEEE
Confidence 579999877767777888888888888 44432211 111 11356677777777778888764
No 284
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.97 E-value=59 Score=29.27 Aligned_cols=52 Identities=15% Similarity=0.273 Sum_probs=42.5
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|+.|.+. +.-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 34 La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (282)
T PRK14180 34 LVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNN 86 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5777777654 445577788899999999999999999999999999987743
No 285
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.95 E-value=26 Score=31.59 Aligned_cols=47 Identities=15% Similarity=0.102 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|.....+.++.++ ++|+|+++|.+.-+.
T Consensus 171 VGkPla~lL~~~~----ATVtichs~T~~L~~~~~~-----ADIvV~AvGkp~~i~ 217 (288)
T PRK14171 171 VGKPLSALLLKEN----CSVTICHSKTHNLSSITSK-----ADIVVAAIGSPLKLT 217 (288)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCCCccC
Confidence 4455555554433 5677789666778888764 699999999876543
No 286
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=48.83 E-value=1.4e+02 Score=26.37 Aligned_cols=103 Identities=13% Similarity=0.169 Sum_probs=68.4
Q ss_pred eeeEeeeceeeeeccccchhhhhhhhhhhcCCCceeeeccCCCC---------CCCCCeEEEEeccCCCHHHHHHHHHHH
Q 029926 65 VRTVSQGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGD---------STDTPIVGIIMESDSDLPVMNDAARTL 135 (185)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~---------~~~~~kVaIIMGS~SDl~vmekA~~vL 135 (185)
+--+-+||+=+.+=-+..- ..+.+.||+.....+-++.+ -.....+..++|- .|.++++++.+..
T Consensus 29 ~diiEvGTpLik~eG~~aV-----~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~-A~~~TI~~~i~~A 102 (217)
T COG0269 29 VDIIEVGTPLIKAEGMRAV-----RALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGA-ADDATIKKAIKVA 102 (217)
T ss_pred ceEEEeCcHHHHHhhHHHH-----HHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEec-CCHHHHHHHHHHH
Confidence 6667788876555444322 35677889999999877774 1123468888887 7899999999999
Q ss_pred HHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 136 SDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 136 eefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
+++|+...+-.++. ++|+...+.++. -|++.+|-=-|.
T Consensus 103 ~~~~~~v~iDl~~~-~~~~~~~~~l~~---~gvd~~~~H~g~ 140 (217)
T COG0269 103 KEYGKEVQIDLIGV-WDPEQRAKWLKE---LGVDQVILHRGR 140 (217)
T ss_pred HHcCCeEEEEeecC-CCHHHHHHHHHH---hCCCEEEEEecc
Confidence 99999876666654 345555444442 345555544333
No 287
>PRK07478 short chain dehydrogenase; Provisional
Probab=48.80 E-value=1.4e+02 Score=23.91 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHhh--CCCeEEEEecCcc
Q 029926 152 NRKGALSYALSAKE--RGIKIIIVGDGVE 178 (185)
Q Consensus 152 tPe~l~ey~k~ae~--~GikVIIAvAG~A 178 (185)
.++.+.+.+++..+ ..++++|-.||..
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~li~~ag~~ 94 (254)
T PRK07478 66 DEAYAKALVALAVERFGGLDIAFNNAGTL 94 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 34444444443322 2578888888864
No 288
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=48.78 E-value=44 Score=26.84 Aligned_cols=51 Identities=24% Similarity=0.259 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHHhCCCe-------------------eE-EEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDFGVPY-------------------EI-KILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpy-------------------Ev-rVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+.=+.+=.+-|+++||.. +. .|-+..=+.++++++++.+.++|++||+=+
T Consensus 2 d~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 2 DFRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp SHHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEESTTTBHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccccccchhhhhhhhhhccccccceEEEee
Confidence 3444444456778888742 33 345555568899999999999999998744
No 289
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.72 E-value=29 Score=31.19 Aligned_cols=33 Identities=9% Similarity=0.065 Sum_probs=26.8
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 144 IKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 144 vrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
..|...|.....+.++.++ ++++|++.|...-+
T Consensus 186 AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~p~li 218 (286)
T PRK14184 186 ATVTVCHSRTPDLAEECRE-----ADFLFVAIGRPRFV 218 (286)
T ss_pred CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcC
Confidence 6788899998888888874 69999999876543
No 290
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=48.68 E-value=78 Score=21.06 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHH
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYAL 161 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k 161 (185)
..+=|.++++.+.|++++++|+..=+..+....++.+.++
T Consensus 7 ~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~ 46 (82)
T cd03419 7 KSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQ 46 (82)
T ss_pred cCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHH
Confidence 4677899999999999999998777777777666655553
No 291
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=48.66 E-value=1.4e+02 Score=24.43 Aligned_cols=65 Identities=22% Similarity=0.085 Sum_probs=43.1
Q ss_pred CeEEEEeccCCCHHHHHHHHH----HHHHh---CCCeeEEEEcCCCCchHHHHHHHHHhh-CCCeEEEEecCcc
Q 029926 113 PIVGIIMESDSDLPVMNDAAR----TLSDF---GVPYEIKILSPHQNRKGALSYALSAKE-RGIKIIIVGDGVE 178 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~----vLeef---GIpyEvrVaSAHRtPe~l~ey~k~ae~-~GikVIIAvAG~A 178 (185)
..+.|+..|.-| +-.++|.+ .++.+ |+++++..+..+..++-+.+..+...+ .+.+|+|..+|+-
T Consensus 26 ~~~vilv~~~~~-~~~~~a~~~l~~~~~~~~~~~~~~~~~~vd~~d~~~~~~~v~~~i~~~~~~~v~vnlsgG~ 98 (203)
T TIGR01884 26 GDLVILVKSPIE-DGARRAVESLRAIISDLGGNLVEGTIKEIELKDVPSILRQMSDIIKEEREPRVIINLSGGM 98 (203)
T ss_pred CcEEEEEcCCCc-hHHHHHHHHHHHHHHHhccCCCcceEEEEecCCHHHHHHHHHHHHHhcccCcEEEEcCCCc
Confidence 357777887644 44444444 44444 789999999988877777776655432 3335898888864
No 292
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.54 E-value=27 Score=31.45 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|+....+.++.++ ++++|+++|.+.-+.
T Consensus 167 VGkPla~lL~~~~----aTVtichs~T~~l~~~~~~-----ADIvIsAvGkp~~i~ 213 (287)
T PRK14173 167 VGKPLAALLLRED----ATVTLAHSKTQDLPAVTRR-----ADVLVVAVGRPHLIT 213 (287)
T ss_pred cHHHHHHHHHHCC----CEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccC
Confidence 5566666665544 4566678877788888764 699999999987553
No 293
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.47 E-value=64 Score=29.04 Aligned_cols=52 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| .-+++.-.+.++++||.++..-.++.-+-+++.+.++...+
T Consensus 33 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 85 (282)
T PRK14169 33 LAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNH 85 (282)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777776654 44577788899999999999999999999999999987643
No 294
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=48.41 E-value=25 Score=33.20 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEEEecCccCcCcCC
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDGVEAHLSGT 184 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVIIAvAG~AAhLPGV 184 (185)
+.|..-+..+..=| +.+.++|||..|+.-..+.+..+..|+ .++++++|.++.|.=|
T Consensus 250 ~~msr~a~~a~~~~--~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V 307 (373)
T KOG2835|consen 250 PVMSRYATSAKSRG--VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIV 307 (373)
T ss_pred hhHhhhhhhcccCc--eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccce
Confidence 34455455555555 689999999999999999988887787 8899999998887643
No 295
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=48.36 E-value=79 Score=27.99 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=38.2
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc---------------------CCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILS---------------------PHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaS---------------------AHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
..+.+.++++-+++.|||+|+-++- .+|-|+ ..++++...++|++|++-+
T Consensus 21 s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 21 GTDKVLEALEKARAAGVKVAGLWLQDWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYI 91 (317)
T ss_pred CHHHHHHHHHHHHHcCCCeeEEEEccccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEe
Confidence 5666788999999999999988762 224454 6788888889999887654
No 296
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=48.32 E-value=89 Score=28.53 Aligned_cols=57 Identities=33% Similarity=0.441 Sum_probs=43.3
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCe-EEEE
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIK-IIIV 173 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gik-VIIA 173 (185)
..|-||.-+.||.++..+|.+-+ .+|-.|.+.|.|..-|.. .++++.+.+ |++ |+||
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~raae-GADlvlIA 64 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRAAE-GADLVLIA 64 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHhhc-cCCEEEEe
Confidence 46999999999999999988775 589999999999875554 456655544 454 5554
No 297
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=48.32 E-value=44 Score=22.19 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchH
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILSPHQNRKG 155 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~ 155 (185)
.=+...++..+|++.|++|+..-+.....+++
T Consensus 8 ~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~ 39 (71)
T cd03060 8 RCPYAMRARMALLLAGITVELREVELKNKPAE 39 (71)
T ss_pred CCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHH
Confidence 34577899999999999998877765433433
No 298
>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge
Probab=48.31 E-value=1.3e+02 Score=26.54 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=41.3
Q ss_pred CeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCC-CeEEEEec
Q 029926 113 PIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG-IKIIIVGD 175 (185)
Q Consensus 113 ~kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~G-ikVIIAvA 175 (185)
.+|+||.-++.+ ...++...+.|++.|++...... .=.....+.+.++..++.+ .+|||.+.
T Consensus 133 ~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~-~~~~~~d~~~~L~~lk~~~~~~viv~~~ 196 (382)
T cd06371 133 AHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTS-MGPDEKGAREALKKVRSADRVRVVIMCM 196 (382)
T ss_pred eEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEE-ecCCHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 469999665432 34688888889999987654321 1235567777787777766 58877643
No 299
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=48.19 E-value=95 Score=22.87 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=28.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN 152 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt 152 (185)
.|.|.+ .+.=|.+.+|...|+++||+|++.-+..+-.
T Consensus 9 ~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~ 45 (99)
T TIGR02189 9 AVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEIDKEPA 45 (99)
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEcCCCcc
Confidence 355554 4778999999999999999998777765433
No 300
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=48.12 E-value=85 Score=27.61 Aligned_cols=66 Identities=15% Similarity=0.121 Sum_probs=45.7
Q ss_pred eEEEEeccCC----CHHHHHHHHHHHHHhCCCeeEEEEc-------CCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 114 IVGIIMESDS----DLPVMNDAARTLSDFGVPYEIKILS-------PHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~S----Dl~vmekA~~vLeefGIpyEvrVaS-------AHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
+|+||.=|.. +.+..+.+.+.|+++|....+.=.. |.-.-++.+++.+...+..++.|+++-|+-+
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g 78 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDD 78 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccC
Confidence 4777776643 3688999999999998864322111 1112356677777778888999999999854
No 301
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=48.06 E-value=73 Score=28.26 Aligned_cols=50 Identities=12% Similarity=0.014 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+-+..++++.|++.-.++..-.++..++.+.+..+.+.|++=+.|..|=
T Consensus 71 ~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 71 HSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 33455556889999999999999999999999999999999988888886
No 302
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=48.03 E-value=95 Score=25.20 Aligned_cols=69 Identities=10% Similarity=-0.132 Sum_probs=41.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHH----HHhCCCeeEEEE--------cCC--CCchHHHHHHHHHhhCCCeEEEEecCc-
Q 029926 113 PIVGIIMESDSDLPVMNDAARTL----SDFGVPYEIKIL--------SPH--QNRKGALSYALSAKERGIKIIIVGDGV- 177 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vL----eefGIpyEvrVa--------SAH--RtPe~l~ey~k~ae~~GikVIIAvAG~- 177 (185)
++|.+|+||.+.-..-...++.+ +..+......+. -.+ ..|+.+.++.+.... .+.+|-+.--
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~--aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAA--ADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHh--CCEEEEECCcc
Confidence 37999999999988766655555 444422111111 123 578888888877765 5555555433
Q ss_pred cCcCcC
Q 029926 178 EAHLSG 183 (185)
Q Consensus 178 AAhLPG 183 (185)
-++.||
T Consensus 79 n~s~pg 84 (184)
T COG0431 79 NGSYPG 84 (184)
T ss_pred CCCCCH
Confidence 333444
No 303
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.03 E-value=62 Score=29.05 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=42.7
Q ss_pred eEEEEeccCCCHH-HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSDLP-VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SDl~-vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+-. +++.-.+.++++||.++..-.++.=+.+++.+.++...+
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 87 (278)
T PRK14172 35 IASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNK 87 (278)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4667777766554 566778999999999999999999999999999987743
No 304
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=47.95 E-value=1e+02 Score=25.92 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=52.6
Q ss_pred CeEEEEeccCCC--HHHHH-HHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 113 PIVGIIMESDSD--LPVMN-DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 113 ~kVaIIMGS~SD--l~vme-kA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
.+|++++...+| +..+. .+.+..+++|+.+.+....++-.+..-.+-++++-.++++.||..+.-+..+.
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~ 106 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALT 106 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhH
Confidence 468999998888 33344 45677788998778888888888887777777777888999888877665543
No 305
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.89 E-value=70 Score=28.91 Aligned_cols=52 Identities=8% Similarity=0.081 Sum_probs=42.2
Q ss_pred eEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+- -+++...+.++++||.+++.-.+..-+.+++.+.++...+
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~ 87 (288)
T PRK14171 35 LAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNL 87 (288)
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 466777766554 4466678999999999999999999999999999987643
No 306
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=47.86 E-value=1.3e+02 Score=24.75 Aligned_cols=65 Identities=8% Similarity=0.085 Sum_probs=40.7
Q ss_pred CCeEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~--vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
..+|+||..+.+|+. .++...+.|++.|+..... ...-.........++.....+.+++|..+..
T Consensus 135 ~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~d~~~~~~~~~~~~~d~i~~~~~~ 201 (334)
T cd06347 135 AKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAE-ETFNAGDTDFSAQLTKIKAKNPDVIFLPGYY 201 (334)
T ss_pred CcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEE-EEecCCCCcHHHHHHHHHhcCCCEEEEcCch
Confidence 357999997765543 4555667788888764222 2211234456677777777788887776544
No 307
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=47.85 E-value=25 Score=32.62 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhCCCe-------------------------eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 127 VMNDAARTLSDFGVPY-------------------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 127 vmekA~~vLeefGIpy-------------------------EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+...+.+.|+.+||+. ...|...|.....+.++.++ ++|+|+++|...-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~-----ADIvIsAvGkp~~v 271 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRK-----ADIVIAAAGIPNLV 271 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 4566667777777642 35677788877778888764 69999999997755
Q ss_pred c
Q 029926 182 S 182 (185)
Q Consensus 182 P 182 (185)
.
T Consensus 272 ~ 272 (345)
T PLN02897 272 R 272 (345)
T ss_pred C
Confidence 4
No 308
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=47.84 E-value=99 Score=24.98 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=36.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHH------------------------HHHHHhh--
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS------------------------YALSAKE-- 165 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~e------------------------y~k~ae~-- 165 (185)
+.++++|+|+.+.+ ...+++.|-+.|.. + +-..|+++.+++ .+++..+
T Consensus 5 ~~k~vlVtGas~gI--G~~ia~~l~~~G~~--V--~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06200 5 HGQVALITGGGSGI--GRALVERFLAEGAR--V--AVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAF 78 (263)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCCCE--E--EEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhc
Confidence 45688899988754 56667777666643 2 223455444433 3332211
Q ss_pred CCCeEEEEecCcc
Q 029926 166 RGIKIIIVGDGVE 178 (185)
Q Consensus 166 ~GikVIIAvAG~A 178 (185)
..++++|-.||..
T Consensus 79 g~id~li~~ag~~ 91 (263)
T PRK06200 79 GKLDCFVGNAGIW 91 (263)
T ss_pred CCCCEEEECCCCc
Confidence 2478999999864
No 309
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.84 E-value=61 Score=29.21 Aligned_cols=52 Identities=13% Similarity=0.206 Sum_probs=42.4
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ ++.-+++...+.++++||.++..-.++.-+.+++.+.++...+
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (285)
T PRK14191 34 LAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNT 86 (285)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455556654 4556688889999999999999999999999999999987743
No 310
>PRK10824 glutaredoxin-4; Provisional
Probab=47.53 E-value=1.3e+02 Score=23.57 Aligned_cols=57 Identities=12% Similarity=0.037 Sum_probs=35.6
Q ss_pred eEEEEeccCC---CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh--CCCeEEEE
Q 029926 114 IVGIIMESDS---DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE--RGIKIIIV 173 (185)
Q Consensus 114 kVaIIMGS~S---Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~--~GikVIIA 173 (185)
.|.|+|=|+- -=|.+.+|..+|+++|++|...-+- ..++ +.+.+++.-+ .=..|||-
T Consensus 16 ~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~~sg~~TVPQIFI~ 77 (115)
T PRK10824 16 PILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPKYANWPTFPQLWVD 77 (115)
T ss_pred CEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHHHhCCCCCCeEEEC
Confidence 4777765543 4568999999999999998654443 3454 4444443322 12277774
No 311
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.53 E-value=34 Score=30.76 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|...+.+.++.++ ++++|+++|...-++
T Consensus 169 VG~Pla~lL~~~~----AtVti~hs~T~~l~~~~~~-----ADIvV~AvGkp~~i~ 215 (281)
T PRK14183 169 VGKPMAALLLNAN----ATVDICHIFTKDLKAHTKK-----ADIVIVGVGKPNLIT 215 (281)
T ss_pred chHHHHHHHHHCC----CEEEEeCCCCcCHHHHHhh-----CCEEEEecCcccccC
Confidence 4555666665444 3455668777788887764 699999999877654
No 312
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=47.41 E-value=68 Score=24.05 Aligned_cols=39 Identities=21% Similarity=0.368 Sum_probs=30.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 153 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtP 153 (185)
.+|+|+.....+..-+-...++|..-| +++.++|.+..|
T Consensus 2 ~~v~ill~~g~~~~e~~~~~~~~~~a~--~~v~vvs~~~~~ 40 (142)
T cd03132 2 RKVGILVADGVDAAELSALKAALKAAG--ANVKVVAPTLGG 40 (142)
T ss_pred CEEEEEEcCCcCHHHHHHHHHHHHHCC--CEEEEEecCcCc
Confidence 468899888888777778888888766 688888887654
No 313
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=47.40 E-value=95 Score=27.83 Aligned_cols=50 Identities=10% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEEEcC----------------------------------CCCchHHHHHHHHHhhCC
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKILSP----------------------------------HQNRKGALSYALSAKERG 167 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrVaSA----------------------------------HRtPe~l~ey~k~ae~~G 167 (185)
.-+...+++.++-+++.|||+|+-++-. .|-| ...++++...++|
T Consensus 20 Y~~~~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FP-dp~~mi~~Lh~~G 98 (340)
T cd06597 20 WDTQAEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWP-NPKGMIDELHEQG 98 (340)
T ss_pred CCCHHHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCC-CHHHHHHHHHHCC
Confidence 3466778899999999999999987730 1112 3678888888999
Q ss_pred CeEEE
Q 029926 168 IKIII 172 (185)
Q Consensus 168 ikVII 172 (185)
++|++
T Consensus 99 ~kv~l 103 (340)
T cd06597 99 VKVLL 103 (340)
T ss_pred CEEEE
Confidence 99865
No 314
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=47.27 E-value=87 Score=25.42 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=22.6
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
+..+..|.+...+..+.+-..++ |--|+.++. ++...+.++.+.+.|+.|+..
T Consensus 34 ~~~~~~d~~~~~~~i~~~~~~~v--dgiii~~~~-~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 34 WYGGALDAVKQVAAIENMASQGW--DFIAVDPLG-IGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred EecCCCCHHHHHHHHHHHHHcCC--CEEEEcCCC-hHHhHHHHHHHHHCCCcEEEe
Confidence 33444455555455554444444 333333331 223333344444444544443
No 315
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=47.20 E-value=26 Score=31.44 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=37.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
.|+||=.|.. +.+..+..|.+.| ..|...|...+.+.++.++ ++++|+++|...-++
T Consensus 160 ~vvViGrs~i---VGkPla~lL~~~~----atVt~~hs~t~~l~~~~~~-----ADIVV~avG~~~~i~ 216 (285)
T PRK14189 160 HAVVIGRSNI---VGKPMAMLLLQAG----ATVTICHSKTRDLAAHTRQ-----ADIVVAAVGKRNVLT 216 (285)
T ss_pred EEEEECCCCc---cHHHHHHHHHHCC----CEEEEecCCCCCHHHHhhh-----CCEEEEcCCCcCccC
Confidence 3544444432 4566666776665 4566678877788887764 699999999765443
No 316
>PRK08643 acetoin reductase; Validated
Probab=46.93 E-value=1.4e+02 Score=23.89 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=14.1
Q ss_pred chHHHHHHHHHhh--CCCeEEEEecCc
Q 029926 153 RKGALSYALSAKE--RGIKIIIVGDGV 177 (185)
Q Consensus 153 Pe~l~ey~k~ae~--~GikVIIAvAG~ 177 (185)
|+.+.+..+...+ .+++++|-.||.
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 63 RDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4444444444332 357888888875
No 317
>PLN02204 diacylglycerol kinase
Probab=46.86 E-value=63 Score=32.24 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=39.7
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHH---hhCCCeEEEEecC
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA---KERGIKIIIVGDG 176 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~a---e~~GikVIIAvAG 176 (185)
.|..+.....+++...|+..|+++++.+.-.- ....+++..+ +..+++.+||+-|
T Consensus 170 sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~a---ghA~d~~~~~~~~~l~~~D~VVaVGG 227 (601)
T PLN02204 170 SGKGSGSRTWETVSPIFIRAKVKTKVIVTERA---GHAFDVMASISNKELKSYDGVIAVGG 227 (601)
T ss_pred CCCcchHHHHHHHHHHHHHcCCeEEEEEecCc---chHHHHHHHHhhhhccCCCEEEEEcC
Confidence 47777778888999999999999888777533 3344444332 3567888888776
No 318
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=46.77 E-value=1e+02 Score=25.78 Aligned_cols=32 Identities=16% Similarity=0.288 Sum_probs=15.3
Q ss_pred eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 143 EIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 143 EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
++.+.++.-.++...++++.+.+++++.||..
T Consensus 30 ~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~ 61 (302)
T TIGR02634 30 KVFVQSANGNEAKQISQIENLIARGVDVLVII 61 (302)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 33444444455544455555545555444443
No 319
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=46.76 E-value=66 Score=28.11 Aligned_cols=52 Identities=15% Similarity=0.116 Sum_probs=41.3
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeE
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikV 170 (185)
.|....++.+.++.+.|.+.|+++.+.+.--.-+.+++.++++.+.+.|++-
T Consensus 125 rg~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~~~~~~~~lg~~~ 176 (358)
T TIGR02109 125 AGYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPEIIELAIELGADR 176 (358)
T ss_pred cCCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHHHHHcCCCE
Confidence 4555567778888899999999988877656678889999998888888753
No 320
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.67 E-value=28 Score=30.91 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=24.8
Q ss_pred CeEEEE--eccCCCHHHHHHHHHHHHHhCCCeeEE
Q 029926 113 PIVGII--MESDSDLPVMNDAARTLSDFGVPYEIK 145 (185)
Q Consensus 113 ~kVaII--MGS~SDl~vmekA~~vLeefGIpyEvr 145 (185)
.+|+|+ .++....+.++++.+.|++.|+++.+.
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~ 39 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILD 39 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 368888 555666677889999999999876553
No 321
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.66 E-value=66 Score=29.05 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=42.3
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.++..-.+..-+-+++.+.++...+
T Consensus 29 LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 81 (287)
T PRK14181 29 LAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNN 81 (287)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46666776544 44577888999999999999999999999999999987743
No 322
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=46.65 E-value=1e+02 Score=24.90 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=23.1
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+.+.+.++++|+ ++.+...- .++...++++....++++-+|..
T Consensus 21 ~gi~~~~~~~gy--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~ 63 (260)
T cd06304 21 EGLEKAEKELGV--EVKYVESV-EDADYEPNLRQLAAQGYDLIFGV 63 (260)
T ss_pred HHHHHHHHhcCc--eEEEEecC-CHHHHHHHHHHHHHcCCCEEEEC
Confidence 444455666654 34443333 56666666666666666655443
No 323
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=46.58 E-value=1.2e+02 Score=25.90 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHh-CCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeef-GIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|...+.++.+.+++. ++|.-+++ ++ +.++..++++.+++.|++.+++.
T Consensus 138 ~~~~~~eiv~~vr~~~~~Pv~vKl-~~--~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 138 DPEAVAEIVKAVKKATDVPVIVKL-TP--NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEe-CC--CchhHHHHHHHHHHcCCCEEEEE
Confidence 445555555555543 66666664 22 22346666666777777766553
No 324
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.55 E-value=69 Score=28.86 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=42.4
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.+++..++..-+.+++.+.++...+
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 87 (284)
T PRK14193 35 LGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNA 87 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45566676544 45677888999999999999999999999999999987744
No 325
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=46.47 E-value=39 Score=29.78 Aligned_cols=56 Identities=14% Similarity=0.137 Sum_probs=37.6
Q ss_pred CeEEEEecc---CCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 113 PIVGIIMES---DSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 113 ~kVaIIMGS---~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
..+|||+|+ ..-+..+++..+.|++-|..+.+-+. =.=+|+++..|-+ +++||-+|
T Consensus 210 ~~~GIiv~tl~~q~~~~~~~~l~~~l~~~gkk~y~~~~-~~i~~~kL~nf~e------id~fV~~a 268 (307)
T PF01866_consen 210 KTFGIIVGTLGGQGYLELIKRLKKLLKKAGKKSYTLSV-GEINPAKLANFPE------IDAFVQIA 268 (307)
T ss_dssp -EEEEEEE-STTT--HHHHHHHHHHHHHTT-EEEEEEE-SS--GGGGTTS---------SEEEE-S
T ss_pred CEEEEEEecCCCCCCHHHHHHHHHHHHHcCCEEEEEEE-CCCCHHHHhcCcc------cCEEEEec
Confidence 579999995 67788899999999999998655544 5778999988863 78888765
No 326
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=46.31 E-value=93 Score=26.46 Aligned_cols=53 Identities=26% Similarity=0.228 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
....-+..++++.|++.-.++..-.++...+.+.+..+.+.|++=+.++.|=.
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 45666777778889999999999999999999999999999998777777743
No 327
>PRK08265 short chain dehydrogenase; Provisional
Probab=46.18 E-value=1.2e+02 Score=24.75 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=24.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHH
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS 158 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~e 158 (185)
+.++++|+|+.+. +...+++.|-+.|. + |+-..|+++.+.+
T Consensus 5 ~~k~vlItGas~g--IG~~ia~~l~~~G~--~--V~~~~r~~~~~~~ 45 (261)
T PRK08265 5 AGKVAIVTGGATL--IGAAVARALVAAGA--R--VAIVDIDADNGAA 45 (261)
T ss_pred CCCEEEEECCCCh--HHHHHHHHHHHCCC--E--EEEEeCCHHHHHH
Confidence 3468888888774 56666666666664 2 3333455544433
No 328
>PRK08177 short chain dehydrogenase; Provisional
Probab=46.08 E-value=1.5e+02 Score=23.44 Aligned_cols=26 Identities=8% Similarity=0.164 Sum_probs=17.6
Q ss_pred chHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 153 RKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 153 Pe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
++.+.++.+...+.+++++|-.||..
T Consensus 57 ~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 57 PASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 44455566555555689999999874
No 329
>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore
Probab=46.03 E-value=1.3e+02 Score=25.95 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=40.5
Q ss_pred CeEEEEeccCCCH--HHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDSDL--PVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~SDl--~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
.+|+||.-+ +|+ ..++...+.+++.|+...+.|.. .-+........++..++.+.+|||..+.
T Consensus 155 ~~vaii~~~-~~~g~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~d~~~~l~~ik~~~~~vIvl~~~ 222 (377)
T cd06379 155 NKVILLVSD-DHEGRAAQKRFETLLEEREIEFKIKVEKVVEFEPGEKNVTSLLQEAKELTSRVILLSAS 222 (377)
T ss_pred eEEEEEEEc-CcchhHHHHHHHHHHHhcCCccceeeeEEEecCCchhhHHHHHHHHhhcCCeEEEEEcC
Confidence 468888654 343 35778888999999844223322 2233345666677777778899987554
No 330
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=45.90 E-value=24 Score=29.76 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=36.4
Q ss_pred eEEEEeccCCCHH-----HHHHHHHHHHHhCCCeeEEEEcCCCC----chHHHHHHH--HHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSDLP-----VMNDAARTLSDFGVPYEIKILSPHQN----RKGALSYAL--SAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SDl~-----vmekA~~vLeefGIpyEvrVaSAHRt----Pe~l~ey~k--~ae~~GikVIIAvA 175 (185)
+|+|++|+.|+.- .+..+.+.|++.|.. +.++..... +.++.+.+. ......+++++-.+
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~--v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 71 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYD--VYPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVL 71 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCE--EEEEeecCCccccccchHHHHhhccccCCCCCEEEEec
Confidence 5999999999754 577889999998875 444444431 112222221 11124478777654
No 331
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=45.86 E-value=1.4e+02 Score=25.38 Aligned_cols=102 Identities=13% Similarity=0.033 Sum_probs=59.7
Q ss_pred eeeEeeeceeeeeccccchhhhhhhhhhhcCCCceeeeccCC-C---C--CCCCCeEEEEeccCCCH-------------
Q 029926 65 VRTVSQGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENAN-G---D--STDTPIVGIIMESDSDL------------- 125 (185)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~-~---~--~~~~~kVaIIMGS~SDl------------- 125 (185)
|+.+-+|. |- +++...++...+.+.-+...+..-... . . ........-+..|.||.
T Consensus 34 v~~iE~g~-p~----~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~ 108 (259)
T cd07939 34 VDEIEVGI-PA----MGEEEREAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWV 108 (259)
T ss_pred CCEEEEec-CC----CCHHHHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHH
Confidence 55555562 32 233322555666655455544332211 1 0 11122344445588887
Q ss_pred -HHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 126 -PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 126 -~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
+.+.++.+..++.|....+...-+.|. |+.+.++++.+.+-|++.|
T Consensus 109 ~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i 156 (259)
T cd07939 109 LDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRL 156 (259)
T ss_pred HHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEE
Confidence 455677778888998777666666665 8888899988888788653
No 332
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=45.86 E-value=1.1e+02 Score=23.80 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCCeeEEEEcCCCCchHHHHHHHHHhhC-CCeEEEEec
Q 029926 139 GVPYEIKILSPHQNRKGALSYALSAKER-GIKIIIVGD 175 (185)
Q Consensus 139 GIpyEvrVaSAHRtPe~l~ey~k~ae~~-GikVIIAvA 175 (185)
|.++++.+...+-.|+...+.++..-++ ++++||...
T Consensus 38 g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 75 (299)
T cd04509 38 GRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPV 75 (299)
T ss_pred CcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCC
Confidence 4556666666666677777766666555 677766543
No 333
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.78 E-value=30 Score=31.32 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-|++.+..|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 169 VGkPla~lL~~~~~~~~aTVtvchs~T~nl~~~~~~-----ADIvIsAvGkp~~i~ 219 (293)
T PRK14185 169 VGKPMAQLMMQKAYPGDCTVTVCHSRSKNLKKECLE-----ADIIIAALGQPEFVK 219 (293)
T ss_pred chHHHHHHHHcCCCCCCCEEEEecCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 567777777766655567788889888888888864 699999999987664
No 334
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=45.73 E-value=1.1e+02 Score=27.34 Aligned_cols=62 Identities=15% Similarity=0.070 Sum_probs=43.0
Q ss_pred eEEEEeccC-C-CHHHHHHHHHHHHHhCCCeeEEEEcCCC----------CchHHHHHHHHH--hhCCCeEEEEecCccC
Q 029926 114 IVGIIMESD-S-DLPVMNDAARTLSDFGVPYEIKILSPHQ----------NRKGALSYALSA--KERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~-S-Dl~vmekA~~vLeefGIpyEvrVaSAHR----------tPe~l~ey~k~a--e~~GikVIIAvAG~AA 179 (185)
+|+||.=|. - +.+..+.+.+.|+++|... +.+.|. .-++..++.+.. .+. ++.|+++-|+-+
T Consensus 3 ~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v---~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg 78 (305)
T PRK11253 3 LFHLIAPSGYPIDQAAALRGVQRLTDAGHQV---ENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYG 78 (305)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHhCCCEE---eeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCC
Confidence 689998885 2 7788999999999999853 223331 123445555544 455 999999999854
No 335
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.67 E-value=67 Score=28.88 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=42.6
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.+++.-.++.-+.+++.+.++...+
T Consensus 35 Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (286)
T PRK14175 35 LSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNN 87 (286)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56677776654 44577788899999999999999999999999999987744
No 336
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=45.58 E-value=1.3e+02 Score=28.26 Aligned_cols=97 Identities=10% Similarity=0.026 Sum_probs=59.6
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeec-------cCCC---CCCCCCeEEEEeccCCCHHHHHHHHHHHHH-hCC
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEE-------NANG---DSTDTPIVGIIMESDSDLPVMNDAARTLSD-FGV 140 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e-------a~~~---~~~~~~kVaIIMGS~SDl~vmekA~~vLee-fGI 140 (185)
-||||++.|-..++.........+-.+-..-. +... .......+.|-.|-. | +..+++...++. .|+
T Consensus 46 giPii~AnMdTV~~~~mA~~la~~g~~~~iHk~~~~e~~~~fv~~~~~~~~~~~~vavG~~-~-~d~er~~~L~~~~~g~ 123 (346)
T PRK05096 46 GVPIIAANMDTVGTFEMAKALASFDILTAVHKHYSVEEWAAFVNNSSADVLKHVMVSTGTS-D-ADFEKTKQILALSPAL 123 (346)
T ss_pred CCceEecCCCccccHHHHHHHHHCCCeEEEecCCCHHHHHHHHHhccccccceEEEEecCC-H-HHHHHHHHHHhcCCCC
Confidence 49999999999998887776666553332221 1111 111123466644433 2 234555555553 566
Q ss_pred CeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 141 PYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 141 pyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
++ +-|=+||=.-+...+.++..++.-.++.
T Consensus 124 D~-iviD~AhGhs~~~i~~ik~ik~~~P~~~ 153 (346)
T PRK05096 124 NF-ICIDVANGYSEHFVQFVAKAREAWPDKT 153 (346)
T ss_pred CE-EEEECCCCcHHHHHHHHHHHHHhCCCCc
Confidence 53 5667899999999999988877644444
No 337
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=45.50 E-value=62 Score=29.21 Aligned_cols=57 Identities=26% Similarity=0.320 Sum_probs=33.3
Q ss_pred CCeEEEEeccC---------CCH--HHHHHHHHHHHHhCCCe-eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 112 TPIVGIIMESD---------SDL--PVMNDAARTLSDFGVPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 112 ~~kVaIIMGS~---------SDl--~vmekA~~vLeefGIpy-EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
+|+|+|++|+. =|. .-.+..+.-++..|++. .+.|+ ++++-++| .||||..|-++
T Consensus 137 ep~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~IL------------IEealkdg-nvIia~dGItG 203 (256)
T COG4002 137 EPKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGIL------------IEEALKDG-NVIIAVDGITG 203 (256)
T ss_pred CcceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeeeE------------HHHHhhcC-CEEEEecCccc
Confidence 46677777653 122 22445555666666654 23332 34444556 89999999877
Q ss_pred cC
Q 029926 180 HL 181 (185)
Q Consensus 180 hL 181 (185)
-|
T Consensus 204 NL 205 (256)
T COG4002 204 NL 205 (256)
T ss_pred hh
Confidence 55
No 338
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=45.44 E-value=1.6e+02 Score=23.87 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=14.1
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
.++.+|+|..+ .+...+++.|-+.|
T Consensus 10 ~k~~lItGa~~--~iG~~ia~~l~~~G 34 (265)
T PRK07097 10 GKIALITGASY--GIGFAIAKAYAKAG 34 (265)
T ss_pred CCEEEEeCCCc--hHHHHHHHHHHHCC
Confidence 45677777665 33455555555555
No 339
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=45.42 E-value=73 Score=24.31 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=32.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
.-....|+++|..... +.-+.-.|+.+.+.++.+-++ ++++|...|.+
T Consensus 22 ~~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g 69 (133)
T cd00758 22 PALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGTG 69 (133)
T ss_pred HHHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCCC
Confidence 3455668899966432 223567788888888777554 89888886654
No 340
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=44.97 E-value=1.4e+02 Score=22.98 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=38.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
.+.++..+..+...++++.+.+++.|++.-+-+--+...+....+..+..++.|+.++
T Consensus 118 vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~~~~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 118 ALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLNDEIAEEIEDYCEEEGIPIL 175 (179)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHHHcCCCeE
Confidence 4666667778899999999999999998644333344333444444444555566654
No 341
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.88 E-value=76 Score=28.55 Aligned_cols=52 Identities=10% Similarity=0.190 Sum_probs=42.5
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+. +.-+++...+.++++||.+++...++.-+.+++.+.++...+
T Consensus 33 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14166 33 LAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNH 85 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5667777654 445577888999999999999999999999999999987643
No 342
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.86 E-value=82 Score=28.35 Aligned_cols=52 Identities=8% Similarity=0.056 Sum_probs=42.7
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ ++.-+++...+.++++||.++..-+++.-+.+++.+.++...+
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (285)
T PRK14189 35 LAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNR 87 (285)
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456666655 4455678889999999999999999999999999999987744
No 343
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=44.78 E-value=1.9e+02 Score=28.42 Aligned_cols=100 Identities=16% Similarity=0.059 Sum_probs=70.7
Q ss_pred cchhhhhhhhhhhcCCCceeeeccCC--C-----------------CCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCC
Q 029926 81 GSATSTRKDYSSVREPSTVFEEENAN--G-----------------DSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVP 141 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~p~~~~~~ea~~--~-----------------~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIp 141 (185)
.+...+|...+.+..|++.+..-.+. + .......+.-|.-+-||.+-++.+.+..++.|..
T Consensus 59 ~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~ 138 (592)
T PRK09282 59 NEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAH 138 (592)
T ss_pred CccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCE
Confidence 44567888888888888776543221 1 0111234667777889999999999999999998
Q ss_pred eeEEEE---cCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 142 YEIKIL---SPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 142 yEvrVa---SAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
.+..++ ++--+++.+.++++.+.+-|++. |+++-+++.+
T Consensus 139 v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~-I~i~Dt~G~~ 180 (592)
T PRK09282 139 VQGTISYTTSPVHTIEKYVELAKELEEMGCDS-ICIKDMAGLL 180 (592)
T ss_pred EEEEEEeccCCCCCHHHHHHHHHHHHHcCCCE-EEECCcCCCc
Confidence 776653 22235799999999999989875 5666665543
No 344
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=44.77 E-value=83 Score=28.58 Aligned_cols=52 Identities=13% Similarity=0.100 Sum_probs=42.5
Q ss_pred eEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+- -+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 42 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 94 (299)
T PLN02516 42 LAVVIVGSRKDSQTYVNMKRKACAEVGIKSFDVDLPENISEAELISKVHELNA 94 (299)
T ss_pred EEEEEECCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566777766554 4577778899999999999999999999999999987743
No 345
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=44.75 E-value=39 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.176 Sum_probs=27.7
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEE
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVII 172 (185)
+++.+.|++.||+|+..-...-++.+++.+......++-+|-+|
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~~~a~~~~~~~~~~~Ktll 45 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSEEVAAIRGTELGQGAKALL 45 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHHHHHHHhCCCcccceEEEE
Confidence 56788899999999987655555566555554322233344444
No 346
>PF02401 LYTB: LytB protein; InterPro: IPR003451 Terpenes are among the largest groups of natural products and include compounds such as vitamins, cholesterol and carotenoids. The biosynthesis of all terpenoids begins with one or both of the two C5 precursors of the pathway: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). In animals, fungi, and certain bacteria, the synthesis of IPP and DMAPP occurs via the well-known mevalonate pathway, however, a second, nonmevalonate terpenoid pathway has been identified in many eubacteria, algae and the chloroplasts of higher plants []. LytB(IspH) catalyses the conversion of 1-hydroy-2-methyl-2-(E)-butenyl 4-diphosphate into IPP and DMAPP in this second pathway The enzyme appears to be responsible for a branch-step in the nonmevalonate pathway, in that IPP and DMAPP are produced in parallel from a single precursor although the exact mechanism of this is not currently fully understood []. Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response [].; GO: 0019288 isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway, 0055114 oxidation-reduction process; PDB: 3DNF_B 3SZL_B 3KE8_B 3KEF_B 3SZU_A 3KEL_A 3F7T_B 3KE9_B 3KEM_B 3T0G_A ....
Probab=44.75 E-value=52 Score=29.46 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=42.8
Q ss_pred eeeeccccchhhhhhhhhhhcC-CCceeeeccCCCCC---CCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 029926 74 PVLASSNGSATSTRKDYSSVRE-PSTVFEEENANGDS---TDTPIVGIIMESDSDLPVMNDAARTLSDF 138 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ea~~~~~---~~~~kVaIIMGS~SDl~vmekA~~vLeef 138 (185)
=||.+.+.+- .+|+..+.+.. +.+.+.+.+.++++ ....+|+|..|...=..+.+++.+.|+++
T Consensus 214 iVIGg~~SsN-T~kL~eia~~~~~~t~~Ie~~~el~~~~l~~~~~VGItaGASTP~~ii~eVi~~l~~~ 281 (281)
T PF02401_consen 214 IVIGGKNSSN-TRKLAEIAKEHGKPTYHIETADELDPEWLKGVKKVGITAGASTPDWIIEEVIDRLEEI 281 (281)
T ss_dssp EEES-TT-HH-HHHHHHHHHHCTTCEEEESSGGG--HHHHTT-SEEEEEE-TTS-HHHHHHHHHHHHHH
T ss_pred EEecCCCCcc-HHHHHHHHHHhCCCEEEeCCccccCHhHhCCCCEEEEEccCCCCHHHHHHHHHHHhcC
Confidence 3555555544 66777677765 68888888888852 22348999999988888999999998874
No 347
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.72 E-value=81 Score=28.37 Aligned_cols=52 Identities=13% Similarity=0.152 Sum_probs=42.1
Q ss_pred eEEEEeccCCCH-HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSDL-PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SDl-~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.|- -+++...+.++++||.++..-++..-+.+++.+.++...+
T Consensus 35 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 87 (284)
T PRK14179 35 LVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQ 87 (284)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 566777766554 4566678999999999999999999999999999987743
No 348
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.63 E-value=29 Score=31.19 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+.+..+..|.+-| ..|...|+..+.+.++.+. ++++|+++|...-+.
T Consensus 171 VG~Pla~lL~~~~----atVtv~hs~T~~l~~~~~~-----ADIvi~avG~p~~v~ 217 (285)
T PRK10792 171 VGRPMSLELLLAG----CTVTVCHRFTKNLRHHVRN-----ADLLVVAVGKPGFIP 217 (285)
T ss_pred cHHHHHHHHHHCC----CeEEEEECCCCCHHHHHhh-----CCEEEEcCCCccccc
Confidence 4556666666555 4667779988888888864 699999999876543
No 349
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=44.57 E-value=1.6e+02 Score=23.37 Aligned_cols=11 Identities=18% Similarity=0.226 Sum_probs=4.4
Q ss_pred HHHhhCCCeEE
Q 029926 161 LSAKERGIKII 171 (185)
Q Consensus 161 k~ae~~GikVI 171 (185)
+.+.+.|+.|+
T Consensus 74 ~~~~~~~ipvV 84 (277)
T cd06319 74 KLAAQAKIPVV 84 (277)
T ss_pred HHHHHCCCCEE
Confidence 33334444443
No 350
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=44.55 E-value=53 Score=24.57 Aligned_cols=38 Identities=13% Similarity=0.177 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhCCCeeEEEEcCCC-CchHHHHHHHH
Q 029926 125 LPVMNDAARTLSDFGVPYEIKILSPHQ-NRKGALSYALS 162 (185)
Q Consensus 125 l~vmekA~~vLeefGIpyEvrVaSAHR-tPe~l~ey~k~ 162 (185)
=+.+++|.+.|++.||+|+.+=+.... +.+++.++.+.
T Consensus 9 C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~ 47 (111)
T cd03036 9 CSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEK 47 (111)
T ss_pred CHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHH
Confidence 368999999999999999887766544 45666666653
No 351
>PRK01060 endonuclease IV; Provisional
Probab=44.53 E-value=1.3e+02 Score=25.07 Aligned_cols=54 Identities=13% Similarity=0.237 Sum_probs=43.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCe-eEEEEcCC------CCchHHHHHHHHHhhCCCeE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPY-EIKILSPH------QNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpy-EvrVaSAH------RtPe~l~ey~k~ae~~GikV 170 (185)
+|+..+.=.+| ++++.+.+.++|... |+.+-++| -+++.+.++.+..++.|+++
T Consensus 3 ~~g~~~~~~~~---~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~~~~lk~~~~~~gl~~ 63 (281)
T PRK01060 3 LIGAHVSAAGG---LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELNIEAFKAACEKYGISP 63 (281)
T ss_pred eEEEeeecCCC---HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHHHHHHHHHHHHcCCCC
Confidence 68888888888 778999999999985 88776665 35667888888888888874
No 352
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=44.48 E-value=1.3e+02 Score=26.80 Aligned_cols=59 Identities=7% Similarity=0.043 Sum_probs=42.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeE-EEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEI-KILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEv-rVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
.+|+||--++.|+...+...+.+++.|+.... .+-... .+.....+++.++.+.++||.
T Consensus 125 k~vaiiYd~~~~~~~lq~l~~~~~~~g~~v~~~~~~~~~--~~d~~~~L~~ik~~~~~~iil 184 (371)
T cd06388 125 NRFVFLYDTDRGYSILQAIMEKAGQNGWQVSAICVENFN--DASYRRLLEDLDRRQEKKFVI 184 (371)
T ss_pred eEEEEEecCCccHHHHHHHHHhhHhcCCeeeeEEeccCC--cHHHHHHHHHhcccccEEEEE
Confidence 47999998888899999999999999976532 333332 446666677777767776664
No 353
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.47 E-value=66 Score=29.13 Aligned_cols=52 Identities=10% Similarity=0.123 Sum_probs=41.6
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ .+.-+++...+.++++||.+++..++.+-+-+++.+.++...+
T Consensus 34 LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 86 (297)
T PRK14167 34 LATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNA 86 (297)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 455666644 3455677888999999999999999999999999999977743
No 354
>PRK07074 short chain dehydrogenase; Provisional
Probab=44.46 E-value=1.5e+02 Score=23.73 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=13.7
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
++.+|+|..+. +....+..|.+-|
T Consensus 3 k~ilItGat~~--iG~~la~~L~~~g 26 (257)
T PRK07074 3 RTALVTGAAGG--IGQALARRFLAAG 26 (257)
T ss_pred CEEEEECCcch--HHHHHHHHHHHCC
Confidence 35666666663 4555555555555
No 355
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.43 E-value=1.6e+02 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
.+.+.+.+++.|.. +.+......++...++++.+.+.+++-+|.
T Consensus 18 ~~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgiii 61 (265)
T cd06285 18 YEGIEEAAAERGYS--TFVANTGDNPDAQRRAIEMLLDRRVDGLIL 61 (265)
T ss_pred HHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 34455555555543 333444445555555555555555554443
No 356
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=44.31 E-value=1.1e+02 Score=26.61 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=31.3
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCC------------CCchHHHHHHHHHh
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVP-YEIKILSPH------------QNRKGALSYALSAK 164 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIp-yEvrVaSAH------------RtPe~l~ey~k~ae 164 (185)
.|.++.+.|+. |.+...++++.+++.|.. +|+.+.++| ..|+.+.++++...
T Consensus 100 ~p~i~si~G~~-~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~ 164 (299)
T cd02940 100 KILIASIMCEY-NKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVR 164 (299)
T ss_pred CeEEEEecCCC-CHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHH
Confidence 35567777762 444555566666666665 477666666 34666666665554
No 357
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=44.25 E-value=2e+02 Score=24.37 Aligned_cols=26 Identities=4% Similarity=0.059 Sum_probs=15.4
Q ss_pred chHHHHHHHHHhhC--CCeEEEEecCcc
Q 029926 153 RKGALSYALSAKER--GIKIIIVGDGVE 178 (185)
Q Consensus 153 Pe~l~ey~k~ae~~--GikVIIAvAG~A 178 (185)
++.+.++++...+. .++++|-.||..
T Consensus 67 ~~~v~~~~~~~~~~~~~iD~li~nAg~~ 94 (322)
T PRK07453 67 LDSVRRFVDDFRALGKPLDALVCNAAVY 94 (322)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECCccc
Confidence 44455555443332 378999888853
No 358
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.23 E-value=90 Score=28.21 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=43.1
Q ss_pred eEEEEeccC-CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESD-SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~-SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+ ++.-+++...+.++++||.++....+..-+.+++.+.++...+
T Consensus 41 Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~ 93 (287)
T PRK14176 41 LATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNK 93 (287)
T ss_pred EEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466666755 4566688889999999999999999999999999999987744
No 359
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=44.08 E-value=3.1e+02 Score=26.59 Aligned_cols=123 Identities=19% Similarity=0.239 Sum_probs=77.0
Q ss_pred cccccccccceeeecccccCCcceeeEeeeceeeeeccccchh----hhhhhhhhhcCC-CceeeeccCCCCCCCCCeEE
Q 029926 42 EPRQKKFVEGKVRMLNNSRRSNSVRTVSQGTIPVLASSNGSAT----STRKDYSSVREP-STVFEEENANGDSTDTPIVG 116 (185)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p-~~~~~~ea~~~~~~~~~kVa 116 (185)
+.-++-.|.||+...-- -|.--+++.+|-.+. -++.+.+++++. +=-|.++-+...+....+||
T Consensus 71 ~eG~~V~v~G~is~Y~~-----------rG~YQi~~~~~~p~G~G~L~~~~E~lK~kL~aEGlFd~~~KkpLP~~p~~IG 139 (440)
T COG1570 71 EEGMQVLVRGKISLYEP-----------RGDYQIVAESMEPAGLGALYLAFEQLKAKLAAEGLFDPERKKPLPFFPKKIG 139 (440)
T ss_pred cCCCEEEEEEEEEEEcC-----------CCceEEEEecCCcCChhHHHHHHHHHHHHHHhCCCcChhhcCCCCCCCCeEE
Confidence 34456667788765533 356667777775432 455666666655 34455554333355556799
Q ss_pred EEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC----CchHHHHHHHHHhhCC-CeEEEEecCc
Q 029926 117 IIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ----NRKGALSYALSAKERG-IKIIIVGDGV 177 (185)
Q Consensus 117 IIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR----tPe~l~ey~k~ae~~G-ikVIIAvAG~ 177 (185)
||++.++ .....+..++++--=.+++-|...-= .+.++.+-++.+.+.+ ++|+|.+=|+
T Consensus 140 VITS~tg--AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGG 203 (440)
T COG1570 140 VITSPTG--AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGG 203 (440)
T ss_pred EEcCCch--HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEEecCc
Confidence 9998765 67778888887644346666665332 2455555556666665 8999999886
No 360
>PRK05854 short chain dehydrogenase; Provisional
Probab=44.00 E-value=1.3e+02 Score=25.68 Aligned_cols=43 Identities=19% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
++.+++||+|..| -+...+++.|-+-|. .+.+ +-|++++.++.
T Consensus 12 l~gk~~lITGas~--GIG~~~a~~La~~G~--~Vil--~~R~~~~~~~~ 54 (313)
T PRK05854 12 LSGKRAVVTGASD--GLGLGLARRLAAAGA--EVIL--PVRNRAKGEAA 54 (313)
T ss_pred cCCCEEEEeCCCC--hHHHHHHHHHHHCCC--EEEE--EeCCHHHHHHH
Confidence 4457889999876 556777777777663 3322 33555544443
No 361
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.96 E-value=1.5e+02 Score=23.72 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=21.5
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHH
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGAL 157 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ 157 (185)
.+..+|+|+.+. +....++.|-+.|. +|+..+|++++++
T Consensus 12 ~k~ilItGa~g~--IG~~la~~l~~~G~----~V~~~~r~~~~~~ 50 (259)
T PRK08213 12 GKTALVTGGSRG--LGLQIAEALGEAGA----RVVLSARKAEELE 50 (259)
T ss_pred CCEEEEECCCch--HHHHHHHHHHHcCC----EEEEEeCCHHHHH
Confidence 356777777664 34555555555554 2444455555443
No 362
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=43.88 E-value=1.8e+02 Score=24.55 Aligned_cols=62 Identities=15% Similarity=0.250 Sum_probs=41.4
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCC-eeEEEEcCCC--------CchHHHHHHHHHhhC-CCeEEEEec
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVP-YEIKILSPHQ--------NRKGALSYALSAKER-GIKIIIVGD 175 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIp-yEvrVaSAHR--------tPe~l~ey~k~ae~~-GikVIIAvA 175 (185)
.|.++.|+|+ |.+...++++.+.+.|+. .|+.+.++|- .|+.+.++++..++. +.-|++=+.
T Consensus 99 ~pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~ 170 (289)
T cd02810 99 QPLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLS 170 (289)
T ss_pred CeEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeC
Confidence 3556667776 556677778888888887 4888777653 567778888766543 344555444
No 363
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=43.70 E-value=1.6e+02 Score=23.31 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
...+.+.+.++++|....+.. .....+...++.+...+.+++.||...
T Consensus 19 ~~~~~i~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiii~~ 66 (268)
T cd06277 19 EIYRAIEEEAKKYGYNLILKF--VSDEDEEEFELPSFLEDGKVDGIILLG 66 (268)
T ss_pred HHHHHHHHHHHHcCCEEEEEe--CCCChHHHHHHHHHHHHCCCCEEEEeC
Confidence 334555666666665433332 223334444444444455566555543
No 364
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=43.62 E-value=1.4e+02 Score=27.28 Aligned_cols=60 Identities=7% Similarity=0.080 Sum_probs=48.1
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------chHHHHHHHHHhhCCCeEEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt---------Pe~l~ey~k~ae~~GikVIIA 173 (185)
...+|=|=..+.+.+++.++.|+.++..+.+.++-.|.. +++++++.+..++.|+.|.|=
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR 324 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVR 324 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEe
Confidence 356777888888899999999998865578888888863 456777888788889998875
No 365
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=43.48 E-value=64 Score=23.42 Aligned_cols=41 Identities=12% Similarity=0.113 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHHH
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSA 163 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~a 163 (185)
+.=+.+++|.+.|++.||+|+..=+. -.-+.+++.++....
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~ 48 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL 48 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence 44688999999999999999766665 355566777776543
No 366
>PHA03050 glutaredoxin; Provisional
Probab=43.43 E-value=1.1e+02 Score=23.25 Aligned_cols=58 Identities=19% Similarity=0.231 Sum_probs=34.5
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCC---CeeEEEEcC-CCCchHHHHHHHHHhhCCC-eEEEE
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGV---PYEIKILSP-HQNRKGALSYALSAKERGI-KIIIV 173 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGI---pyEvrVaSA-HRtPe~l~ey~k~ae~~Gi-kVIIA 173 (185)
+|.|. |.|.=|.+.+|.+.|+++|| +|++.=+.. |..++...++.+....+.+ .|||.
T Consensus 14 ~V~vy--s~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 14 KVTIF--VKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred CEEEE--ECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 45555 45668999999999999999 565544443 2344434444433223233 55553
No 367
>PRK12999 pyruvate carboxylase; Reviewed
Probab=43.35 E-value=1.6e+02 Score=31.14 Aligned_cols=102 Identities=15% Similarity=0.027 Sum_probs=73.6
Q ss_pred cccchhhhhhhhhhhcCCCceeeeccCC--C-----------------CCCCCCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 79 SNGSATSTRKDYSSVREPSTVFEEENAN--G-----------------DSTDTPIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~p~~~~~~ea~~--~-----------------~~~~~~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
-..++..+|++.+.+..|++.+.--.+. + .......+.-|.=+-+|.+.++.+.+..++.|
T Consensus 588 ~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g 667 (1146)
T PRK12999 588 FLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETG 667 (1146)
T ss_pred ccCCCHHHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcC
Confidence 3456667899999999998777643221 0 01112345556678999999999999999999
Q ss_pred CCeeEEEEcC------CC---CchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 140 VPYEIKILSP------HQ---NRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 140 IpyEvrVaSA------HR---tPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
.-.++.++-- -| +++.+.++++.+++-|++ .|+++-+++.|
T Consensus 668 ~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~-~i~ikDt~G~l 717 (1146)
T PRK12999 668 KIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAH-ILAIKDMAGLL 717 (1146)
T ss_pred CeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCC-EEEECCccCCC
Confidence 6555555433 45 788999999999998987 67888777655
No 368
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=43.35 E-value=76 Score=29.57 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=43.0
Q ss_pred eEEEEeccCCCHHH-HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSDLPV-MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SDl~v-mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|+.|.+.|-.. ++...+.++++||.+++.-++..-+-+++.+.++...+
T Consensus 89 LaiIlvGddpaS~~Yv~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~ 141 (345)
T PLN02897 89 LAVVLVGQQRDSQTYVRNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNE 141 (345)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57788887766554 77778899999999999999999888999999987643
No 369
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=43.15 E-value=56 Score=22.06 Aligned_cols=28 Identities=29% Similarity=0.527 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCc
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNR 153 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtP 153 (185)
|.+.++.-+|+++|++|++.++-..+.+
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~~~~~ 30 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPLIPKG 30 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEETTTTB
T ss_pred hHhHHHHHHHHHhCCCCEEEEEeeecCc
Confidence 5678899999999999999998543333
No 370
>PRK13758 anaerobic sulfatase-maturase; Provisional
Probab=42.97 E-value=78 Score=27.70 Aligned_cols=52 Identities=13% Similarity=0.163 Sum_probs=41.2
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
+....++.+.++.+.|.+.|+++.+.+.--.-+.+++.++++.+++.|++.+
T Consensus 138 ~g~~~f~~v~~~i~~l~~~~~~~~i~~~v~~~n~~~l~~i~~~~~~~g~~~~ 189 (370)
T PRK13758 138 CGLDTFSKVERAAELFKKYKVEFNILCVVTSNTARHVNKIYKYFKEKDFKFL 189 (370)
T ss_pred CCCccHHHHHHHHHHHHHhCCCceEEEEeccccccCHHHHHHHHHHcCCCeE
Confidence 3456788899999999999999888766555577788888888888888644
No 371
>PLN02540 methylenetetrahydrofolate reductase
Probab=42.94 E-value=87 Score=30.94 Aligned_cols=52 Identities=15% Similarity=0.078 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
.++-|..+.+++|++.-.++..-.++.+.+.+.+..+.+.|++=|.|..|=.
T Consensus 46 Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDp 97 (565)
T PLN02540 46 TLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDP 97 (565)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 4445555555679999999999999999999999999999999888888854
No 372
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=42.79 E-value=79 Score=21.50 Aligned_cols=46 Identities=4% Similarity=0.016 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
+.+.++...|++.||+|++.-++.. .....++.+--....+-+++-
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~~~--~~~~~~~~~~~p~~~vP~l~~ 56 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCPKG--SPKRDKFLEKGGKVQVPYLVD 56 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECCCC--hHHHHHHHHhCCCCcccEEEe
Confidence 6889999999999999998766532 222334443222333445554
No 373
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=42.51 E-value=1.7e+02 Score=23.13 Aligned_cols=29 Identities=10% Similarity=0.158 Sum_probs=16.9
Q ss_pred CCchHHHHHHHHHhh--CCCeEEEEecCccC
Q 029926 151 QNRKGALSYALSAKE--RGIKIIIVGDGVEA 179 (185)
Q Consensus 151 RtPe~l~ey~k~ae~--~GikVIIAvAG~AA 179 (185)
..++.+.+.++...+ .+++++|-.||...
T Consensus 63 ~~~~~~~~~~~~~~~~~~~id~li~~ag~~~ 93 (246)
T PRK12938 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGITR 93 (246)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCCCC
Confidence 334444454443322 35789999888754
No 374
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=42.47 E-value=92 Score=25.81 Aligned_cols=86 Identities=10% Similarity=0.028 Sum_probs=51.3
Q ss_pred eeeeccccchhhhhhhhhhhcCCCceeeec-cCCC----CCC------CCCeEEEEeccCCCHHH---HHHHHHHHHHhC
Q 029926 74 PVLASSNGSATSTRKDYSSVREPSTVFEEE-NANG----DST------DTPIVGIIMESDSDLPV---MNDAARTLSDFG 139 (185)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~e-a~~~----~~~------~~~kVaIIMGS~SDl~v---mekA~~vLeefG 139 (185)
||+||..-.| +=.++.+...+++++|+|+ ++-. ++. .+++ .+++|..|..+. +++..+.|+++|
T Consensus 7 Nvvas~~l~~-~idL~~la~~l~n~eYeP~fpgli~R~~~Pk~t~lIF~sGK-iviTGaks~~~~~~a~~~~~~~l~~~g 84 (174)
T cd04517 7 NVVCQFSLRC-HIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGK-ITITGATSEEEAKQAARRAARLLQKLG 84 (174)
T ss_pred EEEEEEEcCC-cccHHHHHhhCCCCEEeCCCCEEEEEecCCcEEEEEECCCe-EEEEccCCHHHHHHHHHHHHHHHHHcC
Confidence 7888877666 5667788888889999983 1111 111 0122 356777665443 556678888999
Q ss_pred CCe----eEEE----EcCC-CCchHHHHHHH
Q 029926 140 VPY----EIKI----LSPH-QNRKGALSYAL 161 (185)
Q Consensus 140 Ipy----EvrV----aSAH-RtPe~l~ey~k 161 (185)
++. +++| +|++ ..|=.|+++..
T Consensus 85 ~~~~~~~~f~v~nIvat~~~~~~i~L~~la~ 115 (174)
T cd04517 85 FKVVRFSNFRVVNVLATCSMPFPIRLDELAA 115 (174)
T ss_pred CCcccCCceEEEEEEEEEeCCCcccHHHHHH
Confidence 764 3333 4542 33445555553
No 375
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=42.44 E-value=90 Score=26.85 Aligned_cols=61 Identities=13% Similarity=0.054 Sum_probs=37.2
Q ss_pred CCeEEEEeccCCC-----HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCC-eEEEEecCccC
Q 029926 112 TPIVGIIMESDSD-----LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGI-KIIIVGDGVEA 179 (185)
Q Consensus 112 ~~kVaIIMGS~SD-----l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~Gi-kVIIAvAG~AA 179 (185)
+.+|+|++|+.|- +..++.+.+.|++.|.... .+-.+. .+.+. ......+ .||++.-|..+
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~--~~~~~~-~~~~~----~l~~~~~d~vf~~lhG~~g 69 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV--GVDASG-KELVA----KLLELKPDKCFVALHGEDG 69 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE--EEcCCc-hhHHH----HhhccCCCEEEEeCCCCCC
Confidence 3579999999998 4567888899999887643 333332 12222 2222334 56776655433
No 376
>PRK09389 (R)-citramalate synthase; Provisional
Probab=42.23 E-value=1.5e+02 Score=28.16 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=44.4
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEEE
Q 029926 115 VGIIMESDSDL--------------PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKIII 172 (185)
Q Consensus 115 VaIIMGS~SDl--------------~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVII 172 (185)
+.-+..+.||. +.+.++.+.+++.|..+++..-.+.|+ |+.+.++++.+.+-|++.|.
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~ 161 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRIC 161 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEE
Confidence 45555688998 455666677788999888888888887 67777899888888887644
No 377
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=42.20 E-value=2.6e+02 Score=25.20 Aligned_cols=86 Identities=12% Similarity=-0.099 Sum_probs=54.5
Q ss_pred hhhhhhhhcCCCceeeeccCCC----C--CCCCCeEEEEeccCCC--------------HHHHHHHHHHHHHhCCCeeEE
Q 029926 86 TRKDYSSVREPSTVFEEENANG----D--STDTPIVGIIMESDSD--------------LPVMNDAARTLSDFGVPYEIK 145 (185)
Q Consensus 86 ~~~~~~~~~~p~~~~~~ea~~~----~--~~~~~kVaIIMGS~SD--------------l~vmekA~~vLeefGIpyEvr 145 (185)
+....+.+..|...+..-.... . ......+.-+..+.|| ++.+.++.+..++.|....+.
T Consensus 53 e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~ 132 (365)
T TIGR02660 53 AVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVG 132 (365)
T ss_pred HHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 5555666665655544322221 0 1111223344447787 456668888888999877776
Q ss_pred EEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 146 ILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 146 VaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
.--+.|+ |+.+.++++.+.+-|++.|
T Consensus 133 ~ed~~r~~~~~l~~~~~~~~~~Ga~~i 159 (365)
T TIGR02660 133 GEDASRADPDFLVELAEVAAEAGADRF 159 (365)
T ss_pred ecCCCCCCHHHHHHHHHHHHHcCcCEE
Confidence 6667776 7889999999888888754
No 378
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=42.13 E-value=1.5e+02 Score=26.63 Aligned_cols=57 Identities=18% Similarity=0.137 Sum_probs=45.4
Q ss_pred EEEEeccCCCHHHHHHHHH-HHHHh-CCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 115 VGIIMESDSDLPVMNDAAR-TLSDF-GVPYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~-vLeef-GIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
.-|..=|+|=-++++.... +|.+| |++++.+..+.-++++++.++++.+++...-||
T Consensus 5 ~~i~~VSDstGeTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~ 63 (269)
T PRK05339 5 RHVFLVSDSTGETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVF 63 (269)
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEE
Confidence 3455557777888888777 66789 689999999999999999999999876544444
No 379
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=42.09 E-value=51 Score=24.13 Aligned_cols=39 Identities=15% Similarity=0.183 Sum_probs=25.4
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhC--CCeEEEEecCcc
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKER--GIKIIIVGDGVE 178 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~--GikVIIAvAG~A 178 (185)
-++.++|++.||++++.-++ +.++... ++++||+.+-.+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~d-----------iss~~~~~~~aDiiVtt~~l~ 45 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCA-----------VGEYKSELSGADIIIASTHIA 45 (85)
T ss_pred HHHHHHHHHcCCCeEEEEee-----------hhhcccCCCCCCEEEECccch
Confidence 36789999999998766554 2223333 467777775443
No 380
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=42.00 E-value=66 Score=21.48 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=24.4
Q ss_pred cCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 029926 121 SDSDLPVMNDAARTLSDFGVPYEIKILSPH 150 (185)
Q Consensus 121 S~SDl~vmekA~~vLeefGIpyEvrVaSAH 150 (185)
|.+.=+.+.+|.+.|++.||+|+..-+..+
T Consensus 7 s~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~ 36 (72)
T cd03029 7 TKPGCPFCARAKAALQENGISYEEIPLGKD 36 (72)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 456678999999999999999977666543
No 381
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.85 E-value=1.1e+02 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=20.8
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
++.++++|+|..+|--+...++..|-+-|-
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga 34 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA 34 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 445788888887765566777777766664
No 382
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=41.78 E-value=1.8e+02 Score=23.30 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=42.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---CCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---QNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAH---RtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+|.++-|++ ++++++...|++-.= .++|+..| -++++.+++++...+.+.++++++=|.
T Consensus 49 ~~ifllG~~~---~~~~~~~~~l~~~yP--~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 49 KRIFLLGGSE---EVLEKAAANLRRRYP--GLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLGA 111 (172)
T ss_pred CeEEEEeCCH---HHHHHHHHHHHHHCC--CeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECCC
Confidence 3577777664 677778888876432 34445433 367889999999999999999998774
No 383
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.78 E-value=1.2e+02 Score=26.89 Aligned_cols=49 Identities=12% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-------------CCCCchHHHHHHHHHhhCCCeEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILS-------------PHQNRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaS-------------AHRtPe~l~ey~k~ae~~GikVII 172 (185)
.+.+.+++.++-+++.|||+|+-++. ..|-|+ ..++++..+++|++++.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~ 82 (339)
T cd06604 21 YPEEEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPD-PKELIKELHEQGFKVVT 82 (339)
T ss_pred CCHHHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCC-HHHHHHHHHHCCCEEEE
Confidence 35677788899999999999988887 346664 56788888889998864
No 384
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.68 E-value=1.4e+02 Score=23.71 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCeEEEEeccCCC---HHHHHHHHHHHHHhCCCe-eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGIIMESDSD---LPVMNDAARTLSDFGVPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaIIMGS~SD---l~vmekA~~vLeefGIpy-EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
..+|+++.|.... ..-.+.-.+.|++.|+++ +..+...+-+.+...+.++..-..+.++||+....
T Consensus 122 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ai~~~~d~ 191 (273)
T cd06292 122 HRRIGFASGPGRTVPRRRKIAGFRAALEEAGLEPPEALVARGMFSVEGGQAAAVELLGSGPTAIVAASDL 191 (273)
T ss_pred CceEEEEeCCcccccHHHHHHHHHHHHHHcCCCCChhheEeCCCCHHHHHHHHHHHhcCCCCEEEEcCcH
Confidence 4578888875322 234566677888889875 34455556666666665555433348888887653
No 385
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.62 E-value=95 Score=28.01 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=42.5
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|+.|.+.| ..+++...+.++++||.+++...+++=+-+++.+.++...+
T Consensus 34 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (286)
T PRK14184 34 LAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNA 86 (286)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46677776654 45577778899999999999999999999999999987743
No 386
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.59 E-value=86 Score=28.26 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=42.6
Q ss_pred eEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+. +.-+++...+.++++||.++...+++.-+.+++.+.++...+
T Consensus 36 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~ 88 (285)
T PRK10792 36 LAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNA 88 (285)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4566677654 455678888999999999999999999999999999987743
No 387
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=41.30 E-value=1.7e+02 Score=22.86 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEE
Q 029926 128 MNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 128 mekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIA 173 (185)
.+.+.+.+++.|+ ++.+...-..++...++++.....+++.+|.
T Consensus 18 ~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii 61 (267)
T cd06284 18 LKGIEDEAREAGY--GVLLGDTRSDPEREQEYLDLLRRKQADGIIL 61 (267)
T ss_pred HHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEE
Confidence 4455555555553 3333333344555555555555555554444
No 388
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.24 E-value=88 Score=28.37 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=42.3
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|+.|.+.+ .-+++...+.++++||.+++.-++..-+.+++.+.++...+
T Consensus 36 LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~ 88 (297)
T PRK14168 36 LVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNN 88 (297)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777776654 44567778999999999999999999999999999987743
No 389
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.18 E-value=95 Score=27.91 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=42.4
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ ..+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 29 Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~ 81 (279)
T PRK14178 29 LATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNE 81 (279)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56677776544 45577778999999999999999999999999999987643
No 390
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=41.15 E-value=29 Score=32.13 Aligned_cols=25 Identities=12% Similarity=0.046 Sum_probs=18.8
Q ss_pred eeeeeccccchhhhhhhhhhhcCCC
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPS 97 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~ 97 (185)
+||+++-|+..|+-....+..++=.
T Consensus 45 ~PivlAPMagVtd~~fr~~~~~~Ga 69 (369)
T TIGR01304 45 LPFIAHPMDALVSPEFAIELGELGG 69 (369)
T ss_pred CceeecCCCcccCHHHHHHHHHcCC
Confidence 5999999998887766666655544
No 391
>PRK08303 short chain dehydrogenase; Provisional
Probab=40.95 E-value=1.8e+02 Score=24.97 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=14.9
Q ss_pred CchHHHHHHHHHhh--CCCeEEEEec-Cc
Q 029926 152 NRKGALSYALSAKE--RGIKIIIVGD-GV 177 (185)
Q Consensus 152 tPe~l~ey~k~ae~--~GikVIIAvA-G~ 177 (185)
.++.+.++++...+ ..++++|..| |.
T Consensus 78 ~~~~v~~~~~~~~~~~g~iDilVnnA~g~ 106 (305)
T PRK08303 78 VPEQVRALVERIDREQGRLDILVNDIWGG 106 (305)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECCccc
Confidence 34555555554433 3468888777 63
No 392
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=40.89 E-value=37 Score=23.17 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=18.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCeeEEE
Q 029926 122 DSDLPVMNDAARTLSDFGVPYEIKI 146 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGIpyEvrV 146 (185)
..|.+.++.....|.+|||+..+..
T Consensus 28 ~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 28 SKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp ES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred ECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 4788999999999999999875553
No 393
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=40.60 E-value=1.3e+02 Score=26.15 Aligned_cols=50 Identities=8% Similarity=0.125 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEcC----------------------CCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILSP----------------------HQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaSA----------------------HRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+.+.+++.++-+++.|||+|+-++-. +|-|+ ..+++++.+++|+++++-+
T Consensus 23 s~~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 23 SDEEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CHHHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEe
Confidence 56678899999999999999888842 23343 5778888889999888754
No 394
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=40.56 E-value=1.8e+02 Score=22.87 Aligned_cols=14 Identities=14% Similarity=0.069 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHhCC
Q 029926 127 VMNDAARTLSDFGV 140 (185)
Q Consensus 127 vmekA~~vLeefGI 140 (185)
..+.+.+.+...++
T Consensus 44 ~~~~~~~~l~~~~v 57 (270)
T cd01545 44 LAERVRALLQRSRV 57 (270)
T ss_pred HHHHHHHHHHHCCC
Confidence 33344444444444
No 395
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.34 E-value=1.1e+02 Score=27.85 Aligned_cols=52 Identities=10% Similarity=0.103 Sum_probs=42.0
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| .-+++.-.+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 36 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 88 (301)
T PRK14194 36 LAVILVGNDPASQVYVRNKILRAEEAGIRSLEHRLPADTSQARLLALIAELNA 88 (301)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46666675544 44677788899999999999999999999999999987744
No 396
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=40.31 E-value=1.9e+02 Score=23.08 Aligned_cols=53 Identities=26% Similarity=0.335 Sum_probs=22.2
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
..+.+|.....++.+.|..-++ |--|+++ ..++...+.++.+.+.|+.|+...
T Consensus 35 ~~~~~~~~~~~~~i~~l~~~~v--dgiIi~~-~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 35 ADAQQKQENQISAIRSFIAQGV--DVIILAP-VVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred eCCCCCHHHHHHHHHHHHHcCC--CEEEEcC-CccccchHHHHHHHHCCCCEEEEe
Confidence 3444455544455555544443 3333332 122222333344444455444443
No 397
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=40.26 E-value=2.2e+02 Score=24.00 Aligned_cols=65 Identities=20% Similarity=0.217 Sum_probs=41.9
Q ss_pred CeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeEEEEcCCC-CchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 113 PIVGIIMESDS-DLPVMNDAARTLSDFGVPYEIKILSPHQ-NRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 113 ~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEvrVaSAHR-tPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+|+||.-.+. -...++...+.|++.|+.....+.-..- +...+...++..+..+.++||.....
T Consensus 136 ~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i~~~~~dvvi~~~~~ 202 (350)
T cd06366 136 RRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKLKEKDSRVIVVHFSP 202 (350)
T ss_pred cEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHHhcCCCeEEEEECCh
Confidence 57998875443 2355778888899999875433321111 13567777777777778888876543
No 398
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=40.22 E-value=2.7e+02 Score=24.96 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=43.0
Q ss_pred cCCCHHHHHHHHHHHHH-hC-----CCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 121 SDSDLPVMNDAARTLSD-FG-----VPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 121 S~SDl~vmekA~~vLee-fG-----IpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
+..|.+.++++.+.+++ .+ +|.-+++. .+-+.+++.++++.+++.|++-|++..+.
T Consensus 187 ~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 187 DLQYGEALDELLAALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred cccCHHHHHHHHHHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 35677777777666654 55 89988887 66666788999998989999988888754
No 399
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=39.98 E-value=78 Score=23.61 Aligned_cols=43 Identities=12% Similarity=-0.054 Sum_probs=30.7
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHH
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA 163 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~a 163 (185)
.||..=....+.+...|+..||+|+..=++. .|+...+..+..
T Consensus 10 ~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~--d~~~r~em~~~~ 52 (92)
T cd03030 10 SGSTEIKKRQQEVLGFLEAKKIEFEEVDISM--NEENRQWMRENV 52 (92)
T ss_pred cccHHHHHHHHHHHHHHHHCCCceEEEecCC--CHHHHHHHHHhc
Confidence 3444445556678889999999997777775 577777766554
No 400
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=39.97 E-value=1e+02 Score=25.02 Aligned_cols=54 Identities=9% Similarity=-0.031 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhCCCeeEEEEc------------CCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 124 DLPVMNDAARTLSDFGVPYEIKILS------------PHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpyEvrVaS------------AHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+.+++...+.|+..|+.+.+.--. -++..+.+.+=++.+.+.++++||.+=--
T Consensus 28 ~l~ia~~l~~~L~~~G~~V~ltr~~d~~~~~~~~~~~~~~~~~~L~~R~~~An~~~adlfiSiH~N 93 (189)
T TIGR02883 28 TLEIALKLKDYLQEQGALVVMTREDDSDLASEGTKGYSRRKIEDLRKRVKLINESEADLFISIHLN 93 (189)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCCcCccccccccccccccCCHHHHHHHHHhcCCCEEEEEecC
Confidence 4678899999999999876443221 12233456666667777889999987433
No 401
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=39.95 E-value=41 Score=27.74 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=38.8
Q ss_pred eeeeeccccchhhhhhhhhhhcCC-Cceeeec--cCCCC----CCC------CCeEEEEeccCCCHHHHHHHHHHH
Q 029926 73 IPVLASSNGSATSTRKDYSSVREP-STVFEEE--NANGD----STD------TPIVGIIMESDSDLPVMNDAARTL 135 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~e--a~~~~----~~~------~~kVaIIMGS~SDl~vmekA~~vL 135 (185)
-||+||..-.+ .=+++.+...++ .++|+|| ++..- +.. +++ .+|+|+.|-.+.-+....++
T Consensus 96 ~NIvas~~l~~-~i~L~~la~~~~~~~~YePe~fpgli~r~~~pk~t~lIF~sGk-vvitGaks~~~~~~a~~~i~ 169 (174)
T cd00652 96 QNIVASCDLGF-PIRLEELALKHPENASYEPELFPGLIYRMDEPKVVLLIFVSGK-IVITGAKSREDIYEAVEKIY 169 (174)
T ss_pred EEEEEEEECCC-cccHHHHHhhhhcccEECCccCceEEEEecCCcEEEEEEcCCE-EEEEecCCHHHHHHHHHHHH
Confidence 37888887666 678888888886 9999998 44331 110 122 46789988655544444433
No 402
>TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming). Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response.
Probab=39.93 E-value=89 Score=28.05 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=48.6
Q ss_pred ceeeeeccccchhhhhhhhhhhcC-CCceeeeccCCCCC---CCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 029926 72 TIPVLASSNGSATSTRKDYSSVRE-PSTVFEEENANGDS---TDTPIVGIIMESDSDLPVMNDAARTLSDF 138 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ea~~~~~---~~~~kVaIIMGS~SDl~vmekA~~vLeef 138 (185)
-+=|+.+.|.+- .+|+..+.... +.+.+.+.+.++++ ....+|+|..|-..--..++++.+.|+++
T Consensus 211 ~miVVGg~nSsN-T~rL~ei~~~~~~~t~~Ie~~~el~~~~l~~~~~VGiTAGASTP~~li~eVi~~l~~~ 280 (280)
T TIGR00216 211 LMIVIGGKNSSN-TTRLYEIAEEHGPPSYLIETAEELPEEWLKGVKVVGITAGASTPDWIIEEVIRKIKEL 280 (280)
T ss_pred EEEEECCCCCch-HHHHHHHHHHhCCCEEEECChHHCCHHHhCCCCEEEEEecCCCCHHHHHHHHHHHHhC
Confidence 345666666555 67777777765 67888888888852 22357999999888888889988888753
No 403
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=39.87 E-value=2e+02 Score=23.07 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=8.6
Q ss_pred CchHHHHHHHHHhhCCCeEEE
Q 029926 152 NRKGALSYALSAKERGIKIII 172 (185)
Q Consensus 152 tPe~l~ey~k~ae~~GikVII 172 (185)
.++...++++...+++++-+|
T Consensus 40 ~~~~~~~~i~~l~~~~vDgiI 60 (271)
T cd06314 40 TVNAQLRMLEDLIAEGVDGIA 60 (271)
T ss_pred CHHHHHHHHHHHHhcCCCEEE
Confidence 334344444444444444333
No 404
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=39.86 E-value=81 Score=19.06 Aligned_cols=30 Identities=20% Similarity=0.336 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchH
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKG 155 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~ 155 (185)
+.+.++...|+..||+|+...+........
T Consensus 10 ~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 39 (71)
T cd00570 10 PRSLRVRLALEEKGLPYELVPVDLGEGEQE 39 (71)
T ss_pred ccHHHHHHHHHHcCCCcEEEEeCCCCCCCH
Confidence 678899999999999999888876554443
No 405
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.85 E-value=1.9e+02 Score=22.85 Aligned_cols=12 Identities=33% Similarity=0.653 Sum_probs=9.0
Q ss_pred CCeEEEEecCcc
Q 029926 167 GIKIIIVGDGVE 178 (185)
Q Consensus 167 GikVIIAvAG~A 178 (185)
+++++|-.||..
T Consensus 84 ~id~vi~~ag~~ 95 (239)
T PRK07666 84 SIDILINNAGIS 95 (239)
T ss_pred CccEEEEcCccc
Confidence 578888888764
No 406
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.80 E-value=98 Score=27.94 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=41.8
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK 164 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae 164 (185)
.+.|..|.+.+ .-+++...+.++++||.++..-.+..-+-+++.+.++...
T Consensus 34 Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN 85 (284)
T PRK14170 34 LAVVLVGDNQASRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELN 85 (284)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 56677776544 4557778889999999999999999999999999997764
No 407
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=39.75 E-value=1e+02 Score=27.25 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=40.4
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEE
Q 029926 119 MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 119 MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVI 171 (185)
.|....++.+.++.+.|.+.|+++.+.+.---.+.+++.++++.+.+.|++.+
T Consensus 134 rg~~g~f~~~~~~i~~l~~~g~~v~i~~vv~~~N~~~i~~~~~~~~~lgv~~i 186 (378)
T PRK05301 134 AGTKGAFAKKLAVARLVKAHGYPLTLNAVIHRHNIDQIPRIIELAVELGADRL 186 (378)
T ss_pred cCCCchHHHHHHHHHHHHHCCCceEEEEEeecCCHHHHHHHHHHHHHcCCCEE
Confidence 45544677777888999999999877765444577888888988888888654
No 408
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=39.66 E-value=1.2e+02 Score=26.51 Aligned_cols=88 Identities=8% Similarity=0.161 Sum_probs=61.7
Q ss_pred hhhhhhhhhcCCCceeeec--cCCCCCCCCCeEEEEeccCCC---HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHH
Q 029926 85 STRKDYSSVREPSTVFEEE--NANGDSTDTPIVGIIMESDSD---LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSY 159 (185)
Q Consensus 85 ~~~~~~~~~~~p~~~~~~e--a~~~~~~~~~kVaIIMGS~SD---l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey 159 (185)
+||+..+.. ..+.-|.+. |+.+.......|++|+-+.++ .++++.+.+.|++.|. .+-+...+..|++..++
T Consensus 30 eTr~kV~~a-~~elgY~pN~~Ar~L~~~~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy--~~~l~~~~~~~~~e~~~ 106 (333)
T COG1609 30 ETREKVLAA-IKELGYRPNAVARSLRTGRTKTIGLVVPDITNPFFAEILKGIEEAAREAGY--SLLLANTDDDPEKEREY 106 (333)
T ss_pred HHHHHHHHH-HHHHCCCCCHHHHHHHhCCCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHH
Confidence 666655543 334445544 454444455679999987776 4556777777788875 78888888899999999
Q ss_pred HHHHhhCCCeEEEEec
Q 029926 160 ALSAKERGIKIIIVGD 175 (185)
Q Consensus 160 ~k~ae~~GikVIIAvA 175 (185)
++...+++++=+|...
T Consensus 107 ~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 107 LETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHcCCCEEEEec
Confidence 9999888886666554
No 409
>PRK08339 short chain dehydrogenase; Provisional
Probab=39.61 E-value=2.1e+02 Score=23.49 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=17.0
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
+.++++|+|+.+. +...+++.|-+.|.
T Consensus 7 ~~k~~lItGas~g--IG~aia~~l~~~G~ 33 (263)
T PRK08339 7 SGKLAFTTASSKG--IGFGVARVLARAGA 33 (263)
T ss_pred CCCEEEEeCCCCc--HHHHHHHHHHHCCC
Confidence 3467888887774 35556666666663
No 410
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=39.55 E-value=1.3e+02 Score=26.54 Aligned_cols=51 Identities=12% Similarity=0.134 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-----CC----------CchHHHHHHHHHhhCCCeEEEEe
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSP-----HQ----------NRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSA-----HR----------tPe~l~ey~k~ae~~GikVIIAv 174 (185)
-+.+.+++.++-+++.+||+|+-++-. ++ -| ...++++...++|++|++-+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FP-dp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 21 KTQEELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFP-DPKAMVRELHEMNAELMISI 86 (319)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCC-CHHHHHHHHHHCCCEEEEEe
Confidence 355667888899999999998888874 33 13 35678888889999987644
No 411
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=39.54 E-value=1.3e+02 Score=24.69 Aligned_cols=28 Identities=14% Similarity=0.196 Sum_probs=16.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
..++++|+|..+..-+...+++.|.+-|
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G 34 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHG 34 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcC
Confidence 3467777777664445555555555545
No 412
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=39.53 E-value=2.1e+02 Score=23.29 Aligned_cols=61 Identities=20% Similarity=0.145 Sum_probs=37.8
Q ss_pred CCeEEEE-eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGII-MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaII-MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.++|++| ++|..+....+...+.++++|+..........-+.+...+.+.+ +++|+..-|-
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~-----ad~I~~~GG~ 90 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLE-----ADGIFVGGGN 90 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhh-----CCEEEEcCCc
Confidence 4567776 67766778899999999999987543333222233445555543 4555554454
No 413
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=39.47 E-value=68 Score=25.17 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHH
Q 029926 125 LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALS 162 (185)
Q Consensus 125 l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ 162 (185)
=..+++|.+.|++.||+|+++ +..--=+.+++.++++.
T Consensus 11 Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~ 49 (126)
T TIGR01616 11 CANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGN 49 (126)
T ss_pred CHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHH
Confidence 367899999999999999777 44444567777777764
No 414
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=39.28 E-value=1.7e+02 Score=22.22 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=39.2
Q ss_pred eEEEEeccCCC--HHHHHHHHHHHHHhCCCee-------------------EEEE-cC-C---CCchHHHHHHHHHhhCC
Q 029926 114 IVGIIMESDSD--LPVMNDAARTLSDFGVPYE-------------------IKIL-SP-H---QNRKGALSYALSAKERG 167 (185)
Q Consensus 114 kVaIIMGS~SD--l~vmekA~~vLeefGIpyE-------------------vrVa-SA-H---RtPe~l~ey~k~ae~~G 167 (185)
++.|+-+|.+- ..+++.+.+.|+.-|++++ .-|+ ++ + ..|+.+..|++....+|
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~~~~~fl~~l~~~~ 81 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPDEMKDFIAELGYKP 81 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCHHHHHHHHHhcccC
Confidence 47777777653 4556666676665554332 2222 21 3 45677888887766566
Q ss_pred CeEEEEecCcc
Q 029926 168 IKIIIVGDGVE 178 (185)
Q Consensus 168 ikVIIAvAG~A 178 (185)
-++.+-+.|.+
T Consensus 82 k~~avfgtgd~ 92 (140)
T TIGR01754 82 SNVAIFGTGET 92 (140)
T ss_pred CEEEEEEcCCC
Confidence 67777776643
No 415
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.15 E-value=38 Score=29.75 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=24.1
Q ss_pred eEEEE--eccCCCHHHHHHHHHHHHHhCCCeeEE
Q 029926 114 IVGII--MESDSDLPVMNDAARTLSDFGVPYEIK 145 (185)
Q Consensus 114 kVaII--MGS~SDl~vmekA~~vLeefGIpyEvr 145 (185)
+|+|+ -|...-.+..+++.+.|++.|+.+.+.
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~ 35 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVD 35 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 57887 455566777888999999999876653
No 416
>PRK01355 azoreductase; Reviewed
Probab=38.98 E-value=2.1e+02 Score=23.23 Aligned_cols=60 Identities=15% Similarity=0.154 Sum_probs=36.5
Q ss_pred CeEEEEeccCC--C----HHHHHHHHHHHHHhCCCeeEEEEcCCC-----------------CchHHHHHHHHHhhCCCe
Q 029926 113 PIVGIIMESDS--D----LPVMNDAARTLSDFGVPYEIKILSPHQ-----------------NRKGALSYALSAKERGIK 169 (185)
Q Consensus 113 ~kVaIIMGS~S--D----l~vmekA~~vLeefGIpyEvrVaSAHR-----------------tPe~l~ey~k~ae~~Gik 169 (185)
++|.||.||.. . ...++...+.+++-+-.+++.++.... .++.+.++.+...+ ++
T Consensus 2 ~kIliI~gSpr~~~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--AD 79 (199)
T PRK01355 2 SKVLVIKGSMVAKEKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKVGSVTLTSENFKTFFKEEVSDKYINQLKS--VD 79 (199)
T ss_pred CeEEEEECCCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCcccCCHHHHHhhcCchhHHHHHHHHHh--CC
Confidence 47999999997 2 356777888887755444444443322 24556666666655 44
Q ss_pred EEEEe
Q 029926 170 IIIVG 174 (185)
Q Consensus 170 VIIAv 174 (185)
.||-+
T Consensus 80 ~iV~~ 84 (199)
T PRK01355 80 KVVIS 84 (199)
T ss_pred EEEEE
Confidence 44443
No 417
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=38.94 E-value=1.4e+02 Score=26.19 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCC-CeeEEEE-cCCCCchHHHHHHHHHhhCCCeEE
Q 029926 122 DSDLPVMNDAARTLSDFGV-PYEIKIL-SPHQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 122 ~SDl~vmekA~~vLeefGI-pyEvrVa-SAHRtPe~l~ey~k~ae~~GikVI 171 (185)
..+++.+.+..+.+.+.|+ ++.+... ....+.+++.++++.+.+.|+++.
T Consensus 136 ~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi~~~ 187 (329)
T PRK13361 136 NGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGLDIA 187 (329)
T ss_pred CCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCCeEE
Confidence 3568888899999999999 7777644 334688999999999999998764
No 418
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=38.93 E-value=1.6e+02 Score=25.41 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC---------------CCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSP---------------HQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSA---------------HRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+.+.+++.++-+++.|||+|+-++-. .|-|+ ..+++++..+.|+++++-+.
T Consensus 21 ~~~~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 21 YDEEEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred CCHHHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEec
Confidence 456667888888999999998766552 24444 57888888899999888653
No 419
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.81 E-value=2.9e+02 Score=24.73 Aligned_cols=49 Identities=20% Similarity=0.112 Sum_probs=24.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCC
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERG 167 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~G 167 (185)
|+...|- +.+..+.+...++ -|+++ +-|-.+|-.++...++++..++.+
T Consensus 85 v~~~~~~--~~~~~~~~~~l~e-agv~~-I~vd~~~G~~~~~~~~i~~ik~~~ 133 (325)
T cd00381 85 VGAAVGT--REDDKERAEALVE-AGVDV-IVIDSAHGHSVYVIEMIKFIKKKY 133 (325)
T ss_pred EEEecCC--ChhHHHHHHHHHh-cCCCE-EEEECCCCCcHHHHHHHHHHHHHC
Confidence 4444443 2223344444444 56642 223446777776777666665544
No 420
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.78 E-value=60 Score=28.79 Aligned_cols=60 Identities=20% Similarity=0.165 Sum_probs=35.6
Q ss_pred eEEEEe--ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 114 IVGIIM--ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 114 kVaIIM--GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+|++|. |+....+.++++.+.|++.|+.+.+.....+..+ ...+. ....++++++|++-|
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~GG 66 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVLGG 66 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEECC
Confidence 577774 4444457788999999999987666554443222 11222 222335777777755
No 421
>PRK07062 short chain dehydrogenase; Provisional
Probab=38.69 E-value=2.1e+02 Score=23.05 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
+.++++|+|+.+.+ ...+++.|-+-|.
T Consensus 7 ~~k~~lItGas~gi--G~~ia~~l~~~G~ 33 (265)
T PRK07062 7 EGRVAVVTGGSSGI--GLATVELLLEAGA 33 (265)
T ss_pred CCCEEEEeCCCchH--HHHHHHHHHHCCC
Confidence 34678888877643 3445555554453
No 422
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=38.49 E-value=71 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHH
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALS 162 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~ 162 (185)
..=+.+++|.+.|++.||+|+++=+. -+-+.+++.++++.
T Consensus 8 ~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~ 48 (115)
T cd03032 8 PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSL 48 (115)
T ss_pred CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHH
Confidence 44578999999999999999876654 33445666666653
No 423
>TIGR01957 nuoB_fam NADH-quinone oxidoreductase, B subunit. This model describes the B chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoB. The quinone is plastoquinone in Synechocystis (where the chain is designated K) and in chloroplast, where NADH may be replaced by NADPH. In the methanogenic archaeal genus Methanosarcina, NADH is replaced by F420H2.
Probab=38.38 E-value=36 Score=27.93 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=49.7
Q ss_pred cccceeeecccccCCcceeeEeeeceeeeeccccchhhhhhhhhhhcCCCceee-eccCCCCCCCCCeEEEEeccCCCHH
Q 029926 48 FVEGKVRMLNNSRRSNSVRTVSQGTIPVLASSNGSATSTRKDYSSVREPSTVFE-EENANGDSTDTPIVGIIMESDSDLP 126 (185)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~ea~~~~~~~~~kVaIIMGS~SDl~ 126 (185)
|+.+|+..+-|-.|++|+..+..|+ +-|.-+-...+..+++-.+|- .... .+.....|++|+|+-+..
T Consensus 2 ~~~~~~~~~~~~~r~~s~w~~~~~t--------~cC~iE~~~~~~~~~D~erfG~i~~~--~sPr~aDvllVtG~vt~~- 70 (145)
T TIGR01957 2 VLLTTVDKLLNWGRSNSLWPLTFGL--------ACCAIEMMATGASRYDLDRFGSEVFR--ASPRQADVMIVAGTVTKK- 70 (145)
T ss_pred cccccHHHHHhhhhcCCceeeeeCc--------cHHHHHHHHccCccccHHHhCCceec--CCCCcceEEEEecCCcHH-
Confidence 3446666677888899999988887 126555566666777766555 2211 222224699999998876
Q ss_pred HHHHHHHHHHH
Q 029926 127 VMNDAARTLSD 137 (185)
Q Consensus 127 vmekA~~vLee 137 (185)
..+...++.++
T Consensus 71 ~~~~l~~~~e~ 81 (145)
T TIGR01957 71 MAPALRRLYDQ 81 (145)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 424
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=38.36 E-value=1.4e+02 Score=26.87 Aligned_cols=50 Identities=10% Similarity=0.066 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-------------CCCchHHHHHHHHHhhCCCeEEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSP-------------HQNRKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSA-------------HRtPe~l~ey~k~ae~~GikVIIA 173 (185)
.+.+.+++.++.+++.+||+|+-++.. .|-|+ ..+++++..+.|+++++-
T Consensus 21 ~~~~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~ 83 (332)
T cd06601 21 SNRSDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTN 83 (332)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCC-HHHHHHHHHHCCCeEEEE
Confidence 355668899999999999998887754 55565 467888888999987653
No 425
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.33 E-value=1.1e+02 Score=27.65 Aligned_cols=52 Identities=12% Similarity=0.116 Sum_probs=42.1
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.| ..+++...+.++++||.++..-..++-+.+++.+.++...+
T Consensus 34 Laii~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~ 86 (281)
T PRK14183 34 LAVILVGDDPASHTYVKMKAKACDRVGIYSITHEMPSTISQKEILETIAMMNN 86 (281)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56677776644 45577788899999999999999999999999999987643
No 426
>PRK14469 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=38.29 E-value=1.9e+02 Score=25.90 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=43.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC--------chHHHHHHHHHhhCCCeEEEE
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN--------RKGALSYALSAKERGIKIIIV 173 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt--------Pe~l~ey~k~ae~~GikVIIA 173 (185)
.+|-|-..+.+.+++..+.++.+++ .+.++..|.. .+++.+|.+..++.|+.|.|-
T Consensus 257 vlI~g~NDs~ed~~~La~llk~~~~--~VnLIpynp~~~~~~~ps~e~l~~f~~~l~~~gi~vtvr 320 (343)
T PRK14469 257 ILIKGFNDEIEDAKKLAELLKGLKV--FVNLIPVNPTVPGLEKPSRERIERFKEILLKNGIEAEIR 320 (343)
T ss_pred EEECCCCCCHHHHHHHHHHHhccCc--EEEEEecCCCCccCCCCCHHHHHHHHHHHHHCCCeEEEe
Confidence 3555655558899999999988764 6788888863 367778888888889999885
No 427
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=38.15 E-value=1.6e+02 Score=26.85 Aligned_cols=57 Identities=19% Similarity=0.204 Sum_probs=42.7
Q ss_pred EEEEeccCCCH--------------HHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 115 VGIIMESDSDL--------------PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 115 VaIIMGS~SDl--------------~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
..-+..+.||. +.+.++.+..++.|....+..--+.|+ |+.+.++++.+.+-|++.|
T Consensus 91 ~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I 162 (378)
T PRK11858 91 AVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRV 162 (378)
T ss_pred EEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 44455578996 777788888899998766655456655 7888999998888888754
No 428
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=38.08 E-value=62 Score=24.31 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=23.8
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeE
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPYEI 144 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpyEv 144 (185)
.++++.+.|-.++......+++.||||..
T Consensus 32 ~v~iA~Da~~~vv~~l~~lceek~Ip~v~ 60 (84)
T PRK13600 32 SLIIAEDVEVYLMTRVLSQINQKNIPVSF 60 (84)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 45666677777999999999999999864
No 429
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.85 E-value=1.1e+02 Score=27.59 Aligned_cols=52 Identities=8% Similarity=0.097 Sum_probs=41.6
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++...+
T Consensus 33 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~ 85 (282)
T PRK14182 33 LTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNA 85 (282)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46666675544 44567778999999999999999999999999999976643
No 430
>PRK15414 phosphomannomutase CpsG; Provisional
Probab=37.70 E-value=2.3e+02 Score=26.18 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=48.5
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC---------CC-----chHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH---------QN-----RKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAH---------Rt-----Pe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
..+|+|=.+..+=..++....+.|+++|++.+ |...| +. |+.+.++.+...+.++++-|+.-|=
T Consensus 170 ~lkVvvD~~~G~~~~~~~~l~~~l~~lG~~v~--v~~~~~~pdg~F~~~~p~P~~~~~l~~l~~~v~~~~adlGia~DgD 247 (456)
T PRK15414 170 PLKLVINSGNGAAGPVVDAIEARFKALGAPVE--LIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGD 247 (456)
T ss_pred CCEEEEECCCCcchhhHHHHHHHHHhcCCCeE--EEEeecCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35788888888888888888888999998544 44433 22 3466667777778889999998775
Q ss_pred c
Q 029926 178 E 178 (185)
Q Consensus 178 A 178 (185)
+
T Consensus 248 a 248 (456)
T PRK15414 248 F 248 (456)
T ss_pred c
Confidence 4
No 431
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=37.67 E-value=81 Score=21.30 Aligned_cols=30 Identities=23% Similarity=0.439 Sum_probs=24.5
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVPYEIKILSP 149 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIpyEvrVaSA 149 (185)
+-+..+ +-..++.-.|++.|++|++..+..
T Consensus 4 Ly~~~~--~~~~~v~~~l~~~gl~~~~~~~~~ 33 (81)
T cd03048 4 LYTHGT--PNGFKVSIMLEELGLPYEIHPVDI 33 (81)
T ss_pred EEeCCC--CChHHHHHHHHHcCCCcEEEEecC
Confidence 445554 888999999999999999887764
No 432
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=37.66 E-value=1.7e+02 Score=21.61 Aligned_cols=65 Identities=12% Similarity=0.059 Sum_probs=46.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHh--hCCCeEEEEecCccC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK--ERGIKIIIVGDGVEA 179 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae--~~GikVIIAvAG~AA 179 (185)
.+.|+.+...|.+..++...-|+..+..+.+--+ =-..++.+.++++... ...++++|..||...
T Consensus 26 ~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~-D~~~~~~~~~~~~~~~~~~~~ld~li~~ag~~~ 92 (167)
T PF00106_consen 26 RVVILTSRSEDSEGAQELIQELKAPGAKITFIEC-DLSDPESIRALIEEVIKRFGPLDILINNAGIFS 92 (167)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEES-ETTSHHHHHHHHHHHHHHHSSESEEEEECSCTT
T ss_pred eEEEEeeecccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence 4666666656788888888888888844333322 2467888888887776 345799999999865
No 433
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=37.58 E-value=2e+02 Score=25.43 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=41.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcC-CCCchHHHHHHHHHhhCCCeEE
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSP-HQNRKGALSYALSAKERGIKII 171 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSA-HRtPe~l~ey~k~ae~~GikVI 171 (185)
|....++.+.++.+.|.+.|+++.+...-. --+++++.++++.+.+.|++-+
T Consensus 143 ~~~g~f~~~l~~I~~l~~~G~~v~v~~tv~~~~n~~ei~~~~~~~~~lGv~~i 195 (318)
T TIGR03470 143 CREGVFDRAVEAIREAKARGFRVTTNTTLFNDTDPEEVAEFFDYLTDLGVDGM 195 (318)
T ss_pred cCCCcHHHHHHHHHHHHHCCCcEEEEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 556678889999999999999877654322 3589999999999989888543
No 434
>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated
Probab=37.55 E-value=1.8e+02 Score=25.36 Aligned_cols=60 Identities=12% Similarity=0.102 Sum_probs=39.6
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+|+||.-++.++..+++..+.+++.|+...+ -.......+....++..++.+.++||..
T Consensus 140 k~vaily~~~~g~~~l~~~~~~~~~~g~~v~~--~~~~~~~~d~~~~L~~ik~~~~~~iil~ 199 (384)
T cd06393 140 RSATVVYDDSTGLIRLQELIMAPSRYNIRLKI--RQLPTDSDDARPLLKEMKRGREFRIIFD 199 (384)
T ss_pred cEEEEEEeCchhHHHHHHHHHhhhccCceEEE--EECCCCchHHHHHHHHHhhcCceEEEEE
Confidence 57999987655555556777777778876543 3333344667778888877777766553
No 435
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=37.39 E-value=1e+02 Score=25.74 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
+...+.+++.+.+++-. +++.+.-.....+++.+.++.+.++|++|.+.+-|
T Consensus 7 g~~~I~~~i~elI~~Ae--~eI~is~~~~~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 7 GRETILERIRELIENAE--SEIYISIPPEFLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp SHHHHHHHHHHHHHC-S--SEEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CHHHHHHHHHHHHHHhh--eEEEEEcCHHHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 34556777777777654 46777667777788888888899999999999988
No 436
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=37.36 E-value=77 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHH
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA 160 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~ 160 (185)
.+=+.++++.-+|.+.||+|++.-+.....|+.+.++-
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~n 57 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLA 57 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhC
Confidence 44589999999999999999999888888887766544
No 437
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=37.36 E-value=94 Score=23.31 Aligned_cols=37 Identities=14% Similarity=0.120 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHH
Q 029926 125 LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYAL 161 (185)
Q Consensus 125 l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k 161 (185)
=+.+++|.+.|++.||+|+++ +..--=+.+++.++++
T Consensus 9 C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~ 46 (105)
T cd03035 9 CDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA 46 (105)
T ss_pred CHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence 357899999999999999766 4444446777777775
No 438
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.19 E-value=1.3e+02 Score=27.34 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=41.7
Q ss_pred eEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh
Q 029926 114 IVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE 165 (185)
Q Consensus 114 kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~ 165 (185)
.+.|..|.+.+ .-+++...+.++++||.++..-++..-+.+++.+.++...+
T Consensus 35 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~ 87 (294)
T PRK14187 35 LIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNN 87 (294)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46667776544 44567778999999999999999999999999998877643
No 439
>cd03768 SR_ResInv Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some
Probab=36.91 E-value=83 Score=22.94 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=37.0
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEc---CCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILS---PHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaS---AHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
|...|.|..++..+.+++.++ +-|-. .-|++.++..+++...+.|+.|+.+--
T Consensus 37 ~~~~~R~~~~~ll~~~~~~d~---lvv~~~dRl~R~~~e~~~~~~~l~~~gi~l~~~~~ 92 (126)
T cd03768 37 GGKKERPELQKLLEDLREGDT---LVVTKLDRLGRSTKDLLEIVEELREKGVSLRSLTE 92 (126)
T ss_pred cCCcCCHHHHHHHHhCcCCCE---EEEEEcchhcCcHHHHHHHHHHHHHCCCEEEEecC
Confidence 334788888888887773332 33333 567777777888888899999988743
No 440
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=36.60 E-value=1.5e+02 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.096 Sum_probs=44.1
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCCC----eeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 113 PIVGIIMESDSDLPV---MNDAARTLSDFGVP----YEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 113 ~kVaIIMGS~SDl~v---mekA~~vLeefGIp----yEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+|+||.+.-.+.-+ .+.|.+.|++.|++ ..++|=+|.-.|-....+++ ...++.+||.
T Consensus 8 ~ri~IV~s~fn~~I~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~---s~~~DavIaL 73 (141)
T PLN02404 8 LRFGVVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAK---SGKYDAILCI 73 (141)
T ss_pred CEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHh---cCCCCEEEEE
Confidence 579999998777533 66888999999997 34567777888877777764 3448888875
No 441
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=36.52 E-value=1.2e+02 Score=26.68 Aligned_cols=60 Identities=13% Similarity=0.081 Sum_probs=46.0
Q ss_pred eEEEEeccCCCHH--HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSDLP--VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SDl~--vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+..+|.+++.++. .++...+.|+..|.+ .+.....|.....+..++......+.++|+.+
T Consensus 149 k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~-~~~~~~~~~~~~~~~~~v~~i~~~~~d~v~~~ 210 (366)
T COG0683 149 KRVAIIGDDYAYGEGLADAFKAALKALGGE-VVVEEVYAPGDTDFSALVAKIKAAGPDAVLVG 210 (366)
T ss_pred cEEEEEeCCCCcchhHHHHHHHHHHhCCCe-EEEEEeeCCCCCChHHHHHHHHhcCCCEEEEC
Confidence 3566667777665 488889999999998 66667788888778899988888888854443
No 442
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=36.48 E-value=79 Score=23.94 Aligned_cols=62 Identities=16% Similarity=0.122 Sum_probs=32.8
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCC------------------------eeEEEEcCCCCchHHHHHHHHHhhCCCeE
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVP------------------------YEIKILSPHQNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIp------------------------yEvrVaSAHRtPe~l~ey~k~ae~~GikV 170 (185)
|+||=.|..-.....++...|.+.|.+ ..+.++-.-..|+.+.++++++.+.|++.
T Consensus 3 iAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~~ 82 (116)
T PF13380_consen 3 IAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVKA 82 (116)
T ss_dssp EEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-SE
T ss_pred EEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCCE
Confidence 555555554456677777777776621 22333333445666777777777667777
Q ss_pred EEEecC
Q 029926 171 IIVGDG 176 (185)
Q Consensus 171 IIAvAG 176 (185)
++..+|
T Consensus 83 v~~~~g 88 (116)
T PF13380_consen 83 VWLQPG 88 (116)
T ss_dssp EEE-TT
T ss_pred EEEEcc
Confidence 766666
No 443
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=36.46 E-value=75 Score=28.26 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=32.4
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 120 ESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 120 GS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
++..|-+.+++..++|+++|.. |.+.|+.-..++.+-+...+ .++|.++-|
T Consensus 43 ~~~~~~~Yv~k~~~~l~~lg~~----v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGG 93 (224)
T COG3340 43 VDSEDDFYVEKVRNALAKLGLE----VSELHLSKPPLAAIENKLMK--ADIIYVGGG 93 (224)
T ss_pred cccchHHHHHHHHHHHHHcCCe----eeeeeccCCCHHHHHHhhhh--ccEEEECCc
Confidence 5567788999999999999985 34455544444443333323 466665555
No 444
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.40 E-value=2.2e+02 Score=22.69 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=12.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFG 139 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefG 139 (185)
.++.+|+|..+.+ .....+.|-+-|
T Consensus 11 ~k~ilItGas~~I--G~~la~~l~~~G 35 (256)
T PRK06124 11 GQVALVTGSARGL--GFEIARALAGAG 35 (256)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcC
Confidence 4566777765543 344444444444
No 445
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.40 E-value=74 Score=28.66 Aligned_cols=58 Identities=24% Similarity=0.164 Sum_probs=39.4
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
.+|.||=+|. -+.+..+..|.+-|- .|...|...+.+.++.+. ++++|++.|...-++
T Consensus 158 k~vvVvGrs~---~VG~Pla~lL~~~gA----tVtv~hs~t~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 158 KDVVIIGASN---IVGKPLAMLMLNAGA----SVSVCHILTKDLSFYTQN-----ADIVCVGVGKPDLIK 215 (285)
T ss_pred CEEEEECCCc---hhHHHHHHHHHHCCC----EEEEEeCCcHHHHHHHHh-----CCEEEEecCCCCcCC
Confidence 3466655552 366777777766653 344558777778777764 699999999877654
No 446
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=36.26 E-value=91 Score=24.01 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=28.0
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH 150 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAH 150 (185)
+|+|+..-.-+..-+-...++|+.-|..++++++|.+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~~~~~~~s~~ 37 (179)
T TIGR01383 1 KVLVPLAPGFEEMEAVITVDVLRRAGIKVTVAIVGLN 37 (179)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 4777777777777777778888888877777778776
No 447
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=36.10 E-value=1.5e+02 Score=26.87 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+++.+.+++.+|+ ++-|+..+...++..++++.+++.|++|.+.-
T Consensus 178 ~~l~~~i~~~~id-~ViIa~p~~~~~~~~~ll~~~~~~gv~V~~vP 222 (445)
T TIGR03025 178 DDLVELVRAHRVD-EVIIALPLSEEARILELLLQLRDLGVDVRLVP 222 (445)
T ss_pred HHHHHHHHhCCCC-EEEEecCcccHHHHHHHHHHHHhcCCEEEEeC
Confidence 4566778888887 56677888888889999999999999888763
No 448
>PRK10426 alpha-glucosidase; Provisional
Probab=36.07 E-value=1.3e+02 Score=29.63 Aligned_cols=65 Identities=15% Similarity=0.122 Sum_probs=46.7
Q ss_pred CCCCCe--E-EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEc---------------------CCCCchHHHHHHHHHh
Q 029926 109 STDTPI--V-GIIMESDSDLPVMNDAARTLSDFGVPYEIKILS---------------------PHQNRKGALSYALSAK 164 (185)
Q Consensus 109 ~~~~~k--V-aIIMGS~SDl~vmekA~~vLeefGIpyEvrVaS---------------------AHRtPe~l~ey~k~ae 164 (185)
+.+.|+ . +...|-.+..+.+.+..+.+++.|||+|+-++- ..|-| ..++++++..
T Consensus 201 ~p~~P~Wal~G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FP-dp~~mi~~L~ 279 (635)
T PRK10426 201 QPELPDWAYDGVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYP-QLDSRIKQLN 279 (635)
T ss_pred CCCCChhhccCccccccCCHHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCC-CHHHHHHHHH
Confidence 334454 4 667777776778899999999999999987663 11223 2567888888
Q ss_pred hCCCeEEEEe
Q 029926 165 ERGIKIIIVG 174 (185)
Q Consensus 165 ~~GikVIIAv 174 (185)
+.|+++++-+
T Consensus 280 ~~G~k~v~~i 289 (635)
T PRK10426 280 EEGIQFLGYI 289 (635)
T ss_pred HCCCEEEEEE
Confidence 9999887654
No 449
>PRK07677 short chain dehydrogenase; Provisional
Probab=35.99 E-value=1.9e+02 Score=23.20 Aligned_cols=27 Identities=15% Similarity=0.100 Sum_probs=16.3
Q ss_pred CchHHHHHHHHHhh--CCCeEEEEecCcc
Q 029926 152 NRKGALSYALSAKE--RGIKIIIVGDGVE 178 (185)
Q Consensus 152 tPe~l~ey~k~ae~--~GikVIIAvAG~A 178 (185)
.++.+.++++...+ ..++++|-.||..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 61 NPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred CHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 45556665544432 3578888888753
No 450
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=35.87 E-value=2.7e+02 Score=26.02 Aligned_cols=100 Identities=13% Similarity=0.005 Sum_probs=58.5
Q ss_pred eceeeeeccccchhhhh-hhhhhhcCC-CceeeeccCCCCCCC-CCeEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEE
Q 029926 71 GTIPVLASSNGSATSTR-KDYSSVREP-STVFEEENANGDSTD-TPIVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKI 146 (185)
Q Consensus 71 ~~~~~~~~~~~~~~~~~-~~~~~~~~p-~~~~~~ea~~~~~~~-~~kVaIIMGS~SDl~vmekA~~vLee-fGIpyEvrV 146 (185)
+.+|+|||-++.++..- .++.....+ .+.+.+-+-.-+..+ ...-+..+| .|.+.++++.+.+++ ..+|.-+++
T Consensus 112 ~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~g--q~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 112 PDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVG--QDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhc--cCHHHHHHHHHHHHHhhcCceEEEe
Confidence 56899999988554433 333333322 234443322111111 111122222 578888888887776 479999998
Q ss_pred EcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 147 LSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 147 aSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
..- ...+.++++.+.+.|++-++++.
T Consensus 190 sPn---~t~i~~ia~aa~~~Gadgi~liN 215 (385)
T PLN02495 190 TPN---ITDITQPARVALKSGCEGVAAIN 215 (385)
T ss_pred CCC---hhhHHHHHHHHHHhCCCEEEEec
Confidence 852 23477777777777888777764
No 451
>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci
Probab=35.63 E-value=2.4e+02 Score=26.32 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=40.9
Q ss_pred CeEEEEeccCCC--HHHHHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDSD--LPVMNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~SD--l~vmekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
..|++|.- ++| ...++...+.+++.||..... ++.......++.++++..+..+.+|||..+.
T Consensus 188 k~VaiI~~-dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~~~~~~~d~~~~l~klk~~~a~vVvl~~~ 253 (510)
T cd06364 188 NWVGTIAA-DDDYGRPGIEKFREEAEERDICIDFSELISQYSDEEEIQRVVEVIQNSTAKVIVVFSS 253 (510)
T ss_pred eEEEEEEe-cCcchHHHHHHHHHHHHHCCcEEEEEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEeC
Confidence 45887744 333 345777778889999876433 2333335566677777777777888887553
No 452
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=35.58 E-value=2.5e+02 Score=23.39 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.7
Q ss_pred CCeEEEE-eccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC----CchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 112 TPIVGII-MESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ----NRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 112 ~~kVaII-MGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR----tPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.++|++| ++|.......++..+.++++|+. +++++-.++ ..+++.+.+.+ +++|+..-|.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~~-----ad~I~~~GG~ 93 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLRD-----ADGIFFTGGD 93 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHHh-----CCEEEEeCCc
Confidence 3456665 67766677788999999999986 455554443 22333333332 5666655553
No 453
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=35.56 E-value=2.4e+02 Score=22.76 Aligned_cols=26 Identities=12% Similarity=0.008 Sum_probs=15.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
.++++|+|+.+. +...+++.|-+.|.
T Consensus 7 ~k~~lItGa~~g--IG~~ia~~l~~~G~ 32 (261)
T PRK08936 7 GKVVVITGGSTG--LGRAMAVRFGKEKA 32 (261)
T ss_pred CCEEEEeCCCCh--HHHHHHHHHHHCCC
Confidence 356677777663 35566666666663
No 454
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.55 E-value=2.2e+02 Score=22.38 Aligned_cols=47 Identities=6% Similarity=0.063 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCC-CchHHHHHHHHHhhCCCeEEEEe
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQ-NRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHR-tPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+.+.+.+.++++|+.. .+...-. .++.-.++++.+.+..++-+|..
T Consensus 16 ~~~~gi~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~ 63 (264)
T cd01574 16 STLAAIESAAREAGYAV--TLSMLAEADEEALRAAVRRLLAQRVDGVIVN 63 (264)
T ss_pred HHHHHHHHHHHHCCCeE--EEEeCCCCchHHHHHHHHHHHhcCCCEEEEe
Confidence 34555555666655433 3322222 23444455555544445555443
No 455
>PRK06196 oxidoreductase; Provisional
Probab=35.51 E-value=2.3e+02 Score=23.99 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=36.6
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHH-----------------------HHHHHhh--C
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS-----------------------YALSAKE--R 166 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~e-----------------------y~k~ae~--~ 166 (185)
+.++++|+|..+ -+...+++.|-+-|. . |+-.-|++++..+ +++...+ .
T Consensus 25 ~~k~vlITGasg--gIG~~~a~~L~~~G~--~--Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 25 SGKTAIVTGGYS--GLGLETTRALAQAGA--H--VIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCCEEEEeCCCc--hHHHHHHHHHHHCCC--E--EEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCC
Confidence 346888999876 356666777766664 2 2223455554433 3333222 4
Q ss_pred CCeEEEEecCcc
Q 029926 167 GIKIIIVGDGVE 178 (185)
Q Consensus 167 GikVIIAvAG~A 178 (185)
+++++|-.||..
T Consensus 99 ~iD~li~nAg~~ 110 (315)
T PRK06196 99 RIDILINNAGVM 110 (315)
T ss_pred CCCEEEECCCCC
Confidence 579999999853
No 456
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=35.40 E-value=1.6e+02 Score=23.12 Aligned_cols=65 Identities=14% Similarity=0.223 Sum_probs=38.0
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCCCeeEE-EEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 113 PIVGIIMESDSDLPV---MNDAARTLSDFGVPYEIK-ILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 113 ~kVaIIMGS~SDl~v---mekA~~vLeefGIpyEvr-VaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.+|++++|+..+... .+.-.+.+++.|++.+.. +..-.-.++...+.++..-+.+++.|++....
T Consensus 117 ~~I~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~av~~~~d~ 185 (265)
T cd06299 117 KKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLLDQGATAIIAGDSM 185 (265)
T ss_pred CcEEEEeCCCCcccHHHHHHHHHHHHHHCCCCCChHhEEecCcchHHHHHHHHHHHcCCCCEEEEcCcH
Confidence 479999998765322 344566778888765432 22222234555555555433447888887654
No 457
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.38 E-value=95 Score=24.17 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEc-CCCCchHHHHHHHHH
Q 029926 126 PVMNDAARTLSDFGVPYEIKILS-PHQNRKGALSYALSA 163 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaS-AHRtPe~l~ey~k~a 163 (185)
..+++|...|++.||+|++.-.. --=+.+++.++++..
T Consensus 12 ~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~ 50 (117)
T COG1393 12 STCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKL 50 (117)
T ss_pred hHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHc
Confidence 38999999999999999876554 344566777777644
No 458
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=35.34 E-value=84 Score=23.27 Aligned_cols=32 Identities=9% Similarity=0.145 Sum_probs=26.9
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEE
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKIL 147 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVa 147 (185)
-.||++++.+-.+.++..+.++..+||+ +.+-
T Consensus 26 kLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~ 57 (82)
T PRK13601 26 LQVYIAKDAEEHVTKKIKELCEEKSIKI-VYID 57 (82)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeC
Confidence 5778888888899999999999999999 3443
No 459
>PRK00170 azoreductase; Reviewed
Probab=35.29 E-value=2.2e+02 Score=22.41 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=23.6
Q ss_pred CeEEEEeccCCC-----HHHHHHHHHHHHHh--CCCeeEE
Q 029926 113 PIVGIIMESDSD-----LPVMNDAARTLSDF--GVPYEIK 145 (185)
Q Consensus 113 ~kVaIIMGS~SD-----l~vmekA~~vLeef--GIpyEvr 145 (185)
.+|.||.||..- ...++.+.+.|++- |..+++.
T Consensus 2 mkil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~ 41 (201)
T PRK00170 2 SKVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVR 41 (201)
T ss_pred CeEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEE
Confidence 479999999744 35677788888887 6655444
No 460
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=35.11 E-value=85 Score=27.41 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=37.6
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHH-HHHhhCCCeEEEE
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYA-LSAKERGIKIIIV 173 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~-k~ae~~GikVIIA 173 (185)
|+|--++- ....|++.+++|.++. -.|-|.|+.+ ..+|+ +.+++.|.+|.-+
T Consensus 114 mNPPFG~~-~rhaDr~Fl~~Ale~s--------~vVYsiH~a~--~~~f~~~~~~~~G~~v~~~ 166 (198)
T COG2263 114 MNPPFGSQ-RRHADRPFLLKALEIS--------DVVYSIHKAG--SRDFVEKFAADLGGTVTHI 166 (198)
T ss_pred ECCCCccc-cccCCHHHHHHHHHhh--------heEEEeeccc--cHHHHHHHHHhcCCeEEEE
Confidence 44444444 5669999999999987 4688999998 56666 5566777666543
No 461
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.02 E-value=1.5e+02 Score=22.80 Aligned_cols=58 Identities=24% Similarity=0.223 Sum_probs=44.3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhh--CCCeEEEEe
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKE--RGIKIIIVG 174 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~--~GikVIIAv 174 (185)
|.|+ |.|=-+....+...|.++|+++.+.-+--|-.+.++++++..... .=..|||.+
T Consensus 16 VVif--SKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~G 75 (104)
T KOG1752|consen 16 VVIF--SKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGG 75 (104)
T ss_pred EEEE--ECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECC
Confidence 5555 557778888899999999999999999999999999988875431 223677753
No 462
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=34.99 E-value=2.1e+02 Score=24.24 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=0.0
Q ss_pred Ce-EEEEeccCCCHHHHHHH---HHHHHHhCCCe-eEEEEcCCCCchHHHHHHHHHhhCCCe--EEEEecCccC
Q 029926 113 PI-VGIIMESDSDLPVMNDA---ARTLSDFGVPY-EIKILSPHQNRKGALSYALSAKERGIK--IIIVGDGVEA 179 (185)
Q Consensus 113 ~k-VaIIMGS~SDl~vmekA---~~vLeefGIpy-EvrVaSAHRtPe~l~ey~k~ae~~Gik--VIIAvAG~AA 179 (185)
.+ |+++.|..++....+.. .+.|++.|++. +..|....-+.+.-.+.+++.=+++.+ .||+.....|
T Consensus 119 ~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~~~~~~~g~~~~~~ll~~~p~idai~~~nd~~A 192 (279)
T PF00532_consen 119 RRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEGDFDYESGYEAARELLESHPDIDAIFCANDMMA 192 (279)
T ss_dssp CSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEESSSSHHHHHHHHHHHHHTSTT-SEEEESSHHHH
T ss_pred CCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCcccccccCCCHHHHHHHHHHHHhhCCCCEEEEEeCHHHH
No 463
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=34.88 E-value=1.1e+02 Score=27.15 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=41.7
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
..|.|+.=+..++..+.+++..|.+.|+..++...+ ++. .+-.+.++..|+.-+|.+.-
T Consensus 323 ~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~--~~l---~k~~~~a~~~g~~~~i~ig~ 381 (397)
T TIGR00442 323 PDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGG--RKL---KKQLKYADKLGARFAVILGE 381 (397)
T ss_pred CcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCC--CCH---HHHHHHHHHcCCCEEEEECh
Confidence 468887766788889999999999999998764432 443 44444555677766666653
No 464
>PRK11175 universal stress protein UspE; Provisional
Probab=34.88 E-value=1.4e+02 Score=24.75 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 129 NDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 129 ekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
+++.+.+...|++.+..+.--+ .| ...+.+.+++.+++.||.++-+
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g-~~--~~~i~~~a~~~~~DLiV~G~~~ 117 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHN-RP--FEAIIQEVIAGGHDLVVKMTHQ 117 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCC-Cc--HHHHHHHHHhcCCCEEEEeCCC
Confidence 3334444455777766665223 33 2334444456678888877643
No 465
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=34.86 E-value=1.9e+02 Score=25.63 Aligned_cols=79 Identities=10% Similarity=0.080 Sum_probs=41.8
Q ss_pred ceeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC
Q 029926 72 TIPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ 151 (185)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR 151 (185)
.|=|++|.+|+|- .+|.....+-.+ ...|+.+.....|. ....+++|||+..- + |.
T Consensus 91 ri~vl~Sg~g~nl----~al~~~~~~~~~-----------~~~i~~visn~~~~------~~lA~~~gIp~~~~--~-~~ 146 (286)
T PRK13011 91 KVLIMVSKFDHCL----NDLLYRWRIGEL-----------PMDIVGVVSNHPDL------EPLAAWHGIPFHHF--P-IT 146 (286)
T ss_pred eEEEEEcCCcccH----HHHHHHHHcCCC-----------CcEEEEEEECCccH------HHHHHHhCCCEEEe--C-CC
Confidence 4789999999993 333332221111 12366665556663 33379999997642 1 22
Q ss_pred Cc--hHHH-HHHHHHhhCCCeEEEEe
Q 029926 152 NR--KGAL-SYALSAKERGIKIIIVG 174 (185)
Q Consensus 152 tP--e~l~-ey~k~ae~~GikVIIAv 174 (185)
.. +..+ ++.+..++.++++++.+
T Consensus 147 ~~~~~~~~~~~~~~l~~~~~Dlivla 172 (286)
T PRK13011 147 PDTKPQQEAQVLDVVEESGAELVVLA 172 (286)
T ss_pred cCchhhhHHHHHHHHHHhCcCEEEEe
Confidence 21 1111 23344455567766554
No 466
>TIGR00048 radical SAM enzyme, Cfr family. A Staphylococcus sciuri plasmid-borne member of this family, Cfr, has been identified as essential to transferrable resistance to chloramphenicol and florfenicol by an unknown mechanism. A 14-15 residue cluster with four perfectly conserved Cys residues suggests this protein may be an enzyme with an iron-sulfur cluster. The Cys cluster is part of the radical SAM domain, suggested to provide a general mechanism by which the Fe-S center cleaves S-adenosylmethionine to initiate radical-based catalysis. Members of this family lack apparent transmembrane domains.
Probab=34.79 E-value=2e+02 Score=26.23 Aligned_cols=59 Identities=8% Similarity=0.072 Sum_probs=45.2
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCc---------hHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR---------KGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtP---------e~l~ey~k~ae~~GikVIIAv 174 (185)
...+|-|=..+.+.+++.++.|+.++ +.+.++-.|..+ +++.++.+..++.|+.|.|--
T Consensus 262 eyvLI~GvNDs~e~a~~La~llk~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~iR~ 329 (355)
T TIGR00048 262 EYVLLDGVNDQVEHAEELAELLKGTK--CKVNLIPWNPFPEADYERPSNEQIDRFAKTLMSYGFTVTIRK 329 (355)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC--CceEEEecccCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 36667777777899999999999876 467777777533 677788888888999998843
No 467
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=34.79 E-value=3.1e+02 Score=23.86 Aligned_cols=53 Identities=19% Similarity=0.214 Sum_probs=40.1
Q ss_pred EeccCCCHHHHHHHHHHHHHhCCC-eeEEEE-cCCCCchHHHHHHHHHhhCCCeE
Q 029926 118 IMESDSDLPVMNDAARTLSDFGVP-YEIKIL-SPHQNRKGALSYALSAKERGIKI 170 (185)
Q Consensus 118 IMGS~SDl~vmekA~~vLeefGIp-yEvrVa-SAHRtPe~l~ey~k~ae~~GikV 170 (185)
+.|...+++.+.++.+.|.+.|++ ..+.+. ...-+.+++.++++.+.+.|+++
T Consensus 131 i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~~gv~~ 185 (334)
T TIGR02666 131 ITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKERGVTL 185 (334)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHhcCCeE
Confidence 455556888888999999999987 766643 23457788889998888888864
No 468
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=34.77 E-value=1.1e+02 Score=27.44 Aligned_cols=65 Identities=15% Similarity=0.246 Sum_probs=47.1
Q ss_pred eeeeeccccchhhhhhhhhhhcC-CCceeeeccCCCCC---CCCCeEEEEeccCCCHHHHHHHHHHHHHh
Q 029926 73 IPVLASSNGSATSTRKDYSSVRE-PSTVFEEENANGDS---TDTPIVGIIMESDSDLPVMNDAARTLSDF 138 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ea~~~~~---~~~~kVaIIMGS~SDl~vmekA~~vLeef 138 (185)
+=|+.+.|.+- .+|+.-+.... |.+.+.+.+.++++ ....+|+|..|-..--..+++..+.|+++
T Consensus 213 miVVGg~~SsN-T~rL~eia~~~~~~t~~Ie~~~el~~~~~~~~~~VGitaGASTP~~li~eV~~~l~~~ 281 (281)
T PRK12360 213 MIVIGGKHSSN-TQKLVKICEKNCPNTFHIETADELDLEMLKDYKIIGITAGASTPDWIIEEVIKKIKNL 281 (281)
T ss_pred EEEecCCCCcc-HHHHHHHHHHHCCCEEEECChHHCCHHHhCCCCEEEEEccCCCCHHHHHHHHHHHHhC
Confidence 44566666554 56666666554 77888888888852 22457999999988888899998888754
No 469
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.76 E-value=57 Score=29.47 Aligned_cols=61 Identities=20% Similarity=0.122 Sum_probs=41.6
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLS 182 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLP 182 (185)
+|.||=.|. -+.+..+..|.+-|......|...|.....+.++.++ ++++|+++|.+.-++
T Consensus 155 ~vvViGrS~---iVGkPla~lL~~~~~~~~AtVtvchs~T~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (287)
T PRK14181 155 HVAIVGRSN---IVGKPLAALLMQKHPDTNATVTLLHSQSENLTEILKT-----ADIIIAAIGVPLFIK 215 (287)
T ss_pred EEEEECCCc---cchHHHHHHHHhCcCCCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccC
Confidence 455543332 3667777777665433346777889777778888764 699999999886543
No 470
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=34.74 E-value=2.2e+02 Score=22.24 Aligned_cols=60 Identities=17% Similarity=0.115 Sum_probs=43.9
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCe---------------eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPY---------------EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpy---------------EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
..+.|.-+-...++....-|..+|++. -+-++|-....+++.+.++.++++|++|+.-..
T Consensus 33 I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 33 IFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITT 107 (179)
T ss_pred EEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence 444554455678888888888888754 345667777888999999999999987754433
No 471
>PRK10785 maltodextrin glucosidase; Provisional
Probab=34.72 E-value=1.3e+02 Score=29.12 Aligned_cols=51 Identities=18% Similarity=0.372 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHHhCCCe------------------eEEEEc-CCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 124 DLPVMNDAARTLSDFGVPY------------------EIKILS-PHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 124 Dl~vmekA~~vLeefGIpy------------------EvrVaS-AHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
|+.=+.+-.+-|++|||+. |..-+- .-=+.+++.++++.+.++|++||+=+
T Consensus 177 Dl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 177 DLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 7888888889999999963 111111 11245789999999999999998743
No 472
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=34.66 E-value=2.3e+02 Score=22.45 Aligned_cols=26 Identities=4% Similarity=0.164 Sum_probs=14.5
Q ss_pred chHHHHHHHHHhh--CCCeEEEEecCcc
Q 029926 153 RKGALSYALSAKE--RGIKIIIVGDGVE 178 (185)
Q Consensus 153 Pe~l~ey~k~ae~--~GikVIIAvAG~A 178 (185)
++.+.+.+++..+ ..++++|-.||..
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (248)
T PRK06947 64 EADVIAMFDAVQSAFGRLDALVNNAGIV 91 (248)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 3444444443322 2478999888853
No 473
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=34.58 E-value=92 Score=23.36 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=25.1
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCc
Q 029926 115 VGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNR 153 (185)
Q Consensus 115 VaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtP 153 (185)
|+|+.....+..-+-...++|+..| |+++++|.+..|
T Consensus 1 v~il~~~gf~~~e~~~~~~~~~~a~--~~v~~vs~~~~~ 37 (163)
T cd03135 1 VLVILADGFEEIEAVTPVDVLRRAG--IEVTTASLEKKL 37 (163)
T ss_pred CEEEecCCcchHHHHHHHHHHHHCC--CEEEEEEcCCCc
Confidence 4555555555555666777777766 788888887765
No 474
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=34.48 E-value=2.9e+02 Score=23.46 Aligned_cols=81 Identities=14% Similarity=0.186 Sum_probs=43.2
Q ss_pred eeeeeccccchhhhhhhhhhhcCCCceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC
Q 029926 73 IPVLASSNGSATSTRKDYSSVREPSTVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN 152 (185)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt 152 (185)
|=|++|.+|++-+.=.+++.+. ..+..|..+.++..|... .+..+++|||+. +.+-.+.
T Consensus 2 i~vl~Sg~Gsn~~al~~~~~~~---------------~l~~~i~~visn~~~~~~----~~~A~~~gIp~~--~~~~~~~ 60 (207)
T PLN02331 2 LAVFVSGGGSNFRAIHDACLDG---------------RVNGDVVVVVTNKPGCGG----AEYARENGIPVL--VYPKTKG 60 (207)
T ss_pred EEEEEeCCChhHHHHHHHHHcC---------------CCCeEEEEEEEeCCCChH----HHHHHHhCCCEE--EeccccC
Confidence 5689999999954433332211 112346666666666554 445678899974 2222221
Q ss_pred -chH--HHHHHHHHhhCCCeEEEEe
Q 029926 153 -RKG--ALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 153 -Pe~--l~ey~k~ae~~GikVIIAv 174 (185)
|+. -.++.+..++-++++++.+
T Consensus 61 ~~~~~~~~~~~~~l~~~~~Dliv~a 85 (207)
T PLN02331 61 EPDGLSPDELVDALRGAGVDFVLLA 85 (207)
T ss_pred CCcccchHHHHHHHHhcCCCEEEEe
Confidence 111 1234444455567766554
No 475
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=34.45 E-value=1e+02 Score=26.49 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
+.+++..+.|++-| .|+-|+-+|=..+.-.++++.. .|+++||++
T Consensus 169 ~~~~~~v~~lr~~~--~D~II~l~H~G~~~d~~la~~~--~giD~Iigg 213 (281)
T cd07409 169 EAAQKEADKLKAQG--VNKIIALSHSGYEVDKEIARKV--PGVDVIVGG 213 (281)
T ss_pred HHHHHHHHHHHhcC--CCEEEEEeccCchhHHHHHHcC--CCCcEEEeC
Confidence 44556666666544 6888888999888777777765 568888854
No 476
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=34.41 E-value=2.6e+02 Score=25.33 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCeeEEEEcCCCC-chHHHHHHHHHhhCCCeEE
Q 029926 126 PVMNDAARTLSDFGVPYEIKILSPHQN-RKGALSYALSAKERGIKII 171 (185)
Q Consensus 126 ~vmekA~~vLeefGIpyEvrVaSAHRt-Pe~l~ey~k~ae~~GikVI 171 (185)
+.+.++.+..++.|....+....+.|. |+.+.++++.+.+-|++.|
T Consensus 112 ~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i 158 (363)
T TIGR02090 112 EKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRI 158 (363)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEE
Confidence 446677777788998888887777776 6888889888888888653
No 477
>PF09002 DUF1887: Domain of unknown function (DUF1887); InterPro: IPR015093 This entry represents a set of hypothetical bacterial and archaeal proteins. ; PDB: 1XMX_A.
Probab=34.33 E-value=1.8e+02 Score=26.57 Aligned_cols=67 Identities=13% Similarity=0.072 Sum_probs=41.6
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHH----HHHHHhhCCCeEEEEecCcc
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALS----YALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~e----y~k~ae~~GikVIIAvAG~A 178 (185)
..|.-.|+.+|+.-.+.++....+|+..|+.+++..++-.-..+.+.+ +++.... +-+|++=+.|+.
T Consensus 25 ~~p~kvvlI~t~~~~~~~~~L~~~l~~~~~~~e~~~i~d~~d~~~i~~~l~~l~~~~~~-~~~i~lNlTGGT 95 (381)
T PF09002_consen 25 FKPDKVVLIGTEDMKEKAERLKSVLKQRGIKVEFFEIPDEYDIEEIKESLEQLLEKLKA-GDEIILNLTGGT 95 (381)
T ss_dssp ----EEEEEE-GGGHHHHHHHHHHHHHTT-EEEEEE--SSS-HHHHHHHHHHHHHHHHH-T-EEEEE-SSS-
T ss_pred CCCCEEEEEECchHHHHHHHHHHHHHhcCCCceEEecCChhhHHHHHHHHHHHHHhccC-CCeEEEEeCCCh
Confidence 345667777888779999999999999999998877765455554444 4344443 679999888874
No 478
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=34.32 E-value=95 Score=21.41 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=26.7
Q ss_pred EEEE-eccCCCHHHHHHHHHHHHHhCCCeeEEEEcC
Q 029926 115 VGII-MESDSDLPVMNDAARTLSDFGVPYEIKILSP 149 (185)
Q Consensus 115 VaII-MGS~SDl~vmekA~~vLeefGIpyEvrVaSA 149 (185)
|.|+ .|-..+...+.++.+.|.+.||+.+.-..|.
T Consensus 4 Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~ 39 (75)
T cd04912 4 LNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSE 39 (75)
T ss_pred EEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4554 4556778899999999999999987665443
No 479
>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]
Probab=34.32 E-value=1.3e+02 Score=28.27 Aligned_cols=53 Identities=17% Similarity=0.108 Sum_probs=39.2
Q ss_pred CCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHh
Q 029926 111 DTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAK 164 (185)
Q Consensus 111 ~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae 164 (185)
|+.||++|+|+.|.+-.. -+...|++=+=|..+.++=+-|+..+.++......
T Consensus 1 ~~RKvalITGanSglGl~-i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk 53 (341)
T KOG1478|consen 1 MMRKVALITGANSGLGLA-ICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALK 53 (341)
T ss_pred CCceEEEEecCCCcccHH-HHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHH
Confidence 456899999999987643 24445555555667899999999999998775443
No 480
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=34.31 E-value=2.1e+02 Score=24.83 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=40.9
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHH-hCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSD-FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLee-fGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
+|.++ |+ +-++++++.+.|++ +|+.. +..-+-.-.|++-.++++...+.+.++++++=|.
T Consensus 107 ~v~ll-G~--~~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 107 PVFLV-GG--KPEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred eEEEE-CC--CHHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 46655 65 45689999999864 55442 1222333357777778888888999999988774
No 481
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=34.15 E-value=2.2e+02 Score=23.38 Aligned_cols=107 Identities=13% Similarity=0.126 Sum_probs=57.2
Q ss_pred eeeceeeeeccccchhhhhhhhhhhcCCCceeeeccC--CC-CCCCCCeEEEEeccCC-CHHHHHHHHHHHHHhCCCeeE
Q 029926 69 SQGTIPVLASSNGSATSTRKDYSSVREPSTVFEEENA--NG-DSTDTPIVGIIMESDS-DLPVMNDAARTLSDFGVPYEI 144 (185)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ea~--~~-~~~~~~kVaIIMGS~S-Dl~vmekA~~vLeefGIpyEv 144 (185)
..-+||+|.++..+ .+.-.+++-...|.......+. -+ ......+|+||...++ -....+...+.+++.|+++ +
T Consensus 90 ~~~~ip~i~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~v-v 167 (343)
T PF13458_consen 90 EEAGIPYISPSASS-PSPDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKV-V 167 (343)
T ss_dssp HHHT-EEEESSGGG-GTTTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEE-E
T ss_pred HhcCcEEEEeeccC-CCCCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCcee-c
Confidence 34468888866333 2333333333344332221100 00 1122357999875532 2345667788889999983 2
Q ss_pred EEEcCCCCchHHHHHHHHHhhCCCeEEEEecCc
Q 029926 145 KILSPHQNRKGALSYALSAKERGIKIIIVGDGV 177 (185)
Q Consensus 145 rVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~ 177 (185)
.....--....+..++....+.+.++++..++.
T Consensus 168 ~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~ 200 (343)
T PF13458_consen 168 GEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDP 200 (343)
T ss_dssp EEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTH
T ss_pred cceecccccccchHHHHHHhhcCCCEEEEeccc
Confidence 222223444777778888888889987766544
No 482
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=34.14 E-value=1.3e+02 Score=19.44 Aligned_cols=49 Identities=14% Similarity=0.127 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHH-hhCCCeEEEE
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSA-KERGIKIIIV 173 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~a-e~~GikVIIA 173 (185)
+.=+.+.++...|++.|++|+. +.....++...++.+-- ...++-+|+-
T Consensus 8 ~~C~~C~~~~~~L~~~~~~~~~--idi~~~~~~~~~~~~~~~~~~~vP~i~~ 57 (77)
T TIGR02200 8 TWCGYCAQLMRTLDKLGAAYEW--VDIEEDEGAADRVVSVNNGNMTVPTVKF 57 (77)
T ss_pred CCChhHHHHHHHHHHcCCceEE--EeCcCCHhHHHHHHHHhCCCceeCEEEE
Confidence 3347889999999999999864 55666666555544321 3344555553
No 483
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=34.12 E-value=2.4e+02 Score=25.78 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=47.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------chHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt---------Pe~l~ey~k~ae~~GikVIIAv 174 (185)
.+.+|=|=..+.+.+++.++.|+.++ ..+.++..|.. ++++.+|.+..++.|+.|.|--
T Consensus 259 ey~LIpGvNDs~e~a~~La~~l~~l~--~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~Gi~vtvR~ 326 (345)
T PRK14457 259 EYILLGGVNDLPEHAEELANLLRGFQ--SHVNLIPYNPIDEVEFQRPSPKRIQAFQRVLEQRGVAVSVRA 326 (345)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCC--CeEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCeEEEeC
Confidence 46778888888899999999999875 47888888863 5667778888888899988753
No 484
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=34.09 E-value=2.5e+02 Score=24.55 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=35.1
Q ss_pred CCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCC--CCchHHHHHHHHHhhCCCe
Q 029926 112 TPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPH--QNRKGALSYALSAKERGIK 169 (185)
Q Consensus 112 ~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAH--RtPe~l~ey~k~ae~~Gik 169 (185)
++.|++..--.-+-....++.++|+++||+--+.|.+-+ +.|+.+.+ ..+.|..
T Consensus 84 ~k~VaLTFDdg~~~~~t~~iL~iLkk~~vkATFFv~G~~i~~~p~l~k~----i~~~Ghe 139 (268)
T TIGR02873 84 KPMVALLINVAWGNEYLPEILQILKKHDVKATFFLEGKWVKENSQLAKM----IVEQGHE 139 (268)
T ss_pred CCEEEEEEeCCCCcchHHHHHHHHHHCCCCEEEEeehHhhhHCHHHHHH----HHHCCCE
Confidence 455666432111225788999999999999999999843 45554444 4445654
No 485
>PLN02780 ketoreductase/ oxidoreductase
Probab=34.02 E-value=1.8e+02 Score=25.26 Aligned_cols=26 Identities=12% Similarity=0.074 Sum_probs=14.8
Q ss_pred CeEEEEeccCCCHHHHHHHHHHHHHhCC
Q 029926 113 PIVGIIMESDSDLPVMNDAARTLSDFGV 140 (185)
Q Consensus 113 ~kVaIIMGS~SDl~vmekA~~vLeefGI 140 (185)
.++++|+|..| -+.+..+..|-+-|.
T Consensus 53 g~~~lITGAs~--GIG~alA~~La~~G~ 78 (320)
T PLN02780 53 GSWALVTGPTD--GIGKGFAFQLARKGL 78 (320)
T ss_pred CCEEEEeCCCc--HHHHHHHHHHHHCCC
Confidence 35777888766 334445555555453
No 486
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=33.93 E-value=1.2e+02 Score=24.43 Aligned_cols=59 Identities=15% Similarity=0.096 Sum_probs=42.1
Q ss_pred eEEEEeccCCCHHH---HHHHHHHHHHhCCCe----eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMESDSDLPV---MNDAARTLSDFGVPY----EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS~SDl~v---mekA~~vLeefGIpy----EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+|+||.+.-.+.-+ .+.|.+.|++.|++. .++|-+|-=.|-....+++ ...++-+|+..
T Consensus 2 ri~IV~s~~n~~i~~~L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~---~~~~DavI~LG 67 (138)
T TIGR00114 2 RVGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAE---TGKYDAVIALG 67 (138)
T ss_pred EEEEEEecCCHHHHHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHh---cCCCCEEEEEe
Confidence 57888887766433 568889999999984 4566677777777766664 34588888753
No 487
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=33.78 E-value=1.6e+02 Score=22.92 Aligned_cols=47 Identities=13% Similarity=0.111 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 130 DAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 130 kA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
-..+.|+++|+......+-++. ++.+.+.++++.+ +++++|..-|.+
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd-~~~i~~~l~~~~~-~~DliIttGG~g 77 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDD-PEEIREILRKAVD-EADVVLTTGGTG 77 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCC-HHHHHHHHHHHHh-CCCEEEECCCCC
Confidence 3456688899765444333333 5666666665543 589998885543
No 488
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.69 E-value=64 Score=29.30 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=25.7
Q ss_pred EEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcCcC
Q 029926 144 IKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHLSG 183 (185)
Q Consensus 144 vrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhLPG 183 (185)
..|...||.+..+.+++++ ++|+|++.|.+..+..
T Consensus 184 atVtv~~~~t~~l~e~~~~-----ADIVIsavg~~~~v~~ 218 (301)
T PRK14194 184 CSVTVVHSRSTDAKALCRQ-----ADIVVAAVGRPRLIDA 218 (301)
T ss_pred CEEEEECCCCCCHHHHHhc-----CCEEEEecCChhcccH
Confidence 3455568888877777753 6999999998876653
No 489
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=33.60 E-value=2.1e+02 Score=26.05 Aligned_cols=58 Identities=9% Similarity=0.215 Sum_probs=43.2
Q ss_pred EEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCC---------chHHHHHHHHHhhCCCeEEEEec
Q 029926 116 GIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQN---------RKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 116 aIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRt---------Pe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+|=|=..+.+.+++..+.++.++ ..+.++-.|.. ++++.+|.+.+++.|+.|.|--.
T Consensus 268 ~lI~gvNDs~ed~~~La~ll~~l~--~~VnLIPynp~~~~ky~~ps~e~l~~f~~~L~~~gi~v~ir~~ 334 (356)
T PRK14455 268 ILLGGVNDQVEHAEELADLLKGIK--CHVNLIPVNPVPERDYVRTPKEDIFAFEDTLKKNGVNCTIRRE 334 (356)
T ss_pred EEeCCCCCCHHHHHHHHHHHhcCC--CcEEEEecCcCCCCCCcCCCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 344444455788999999999886 56777776654 36688888888899999988543
No 490
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=33.55 E-value=94 Score=30.14 Aligned_cols=49 Identities=12% Similarity=0.170 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCe-e--------------------EEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 126 PVMNDAARTLSDFGVPY-E--------------------IKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 126 ~vmekA~~vLeefGIpy-E--------------------vrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+.++..+-|+++||+. + ..|-+..=+|+++.++++.+.++|++||+=+
T Consensus 157 ~i~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 157 ELADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGYYAPTSRFGTPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred HHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCcccccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 44566668899999973 1 1222333458899999999999999999743
No 491
>PLN02530 histidine-tRNA ligase
Probab=33.53 E-value=1.3e+02 Score=28.24 Aligned_cols=56 Identities=11% Similarity=0.016 Sum_probs=39.4
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 114 IVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 114 kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.|.|+.-++.....+.+++..|.+-|+..++-..+ +. +.+-++.|...|++.+|.+
T Consensus 403 dVlVi~~~~~~~~~A~~ia~~LR~~Gi~vevd~~~--~~---l~k~ik~A~k~g~~~ivii 458 (487)
T PLN02530 403 DDVVFALDEDLQGAAAGVASRLREKGRSVDLVLEP--KK---LKWVFKHAERIGAKRLVLV 458 (487)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCeEEEecCC--CC---HHHHHHHHHHCCCCEEEEE
Confidence 57788766777888999999999999988775443 33 4445555567777654444
No 492
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=33.45 E-value=3.5e+02 Score=24.74 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=56.0
Q ss_pred cchhhhhhhhhhhcCC-CceeeeccCCCCCCCCCeEEEEeccCCCHHHHHHHHHHHHHhCCCeeEEEEcCCC----CchH
Q 029926 81 GSATSTRKDYSSVREP-STVFEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQ----NRKG 155 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~p-~~~~~~ea~~~~~~~~~kVaIIMGS~SDl~vmekA~~vLeefGIpyEvrVaSAHR----tPe~ 155 (185)
|+- .++++.+++++- +=.|.++-+...+.-..+||||++.++.- .+....++++-.-.+++.+..+-= .|..
T Consensus 104 G~l-~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa--~~D~~~~~~~r~p~~~~~~~~~~vQG~~A~~~ 180 (438)
T PRK00286 104 GAL-AAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAA--IRDILTVLRRRFPLVEVIIYPTLVQGEGAAAS 180 (438)
T ss_pred cHH-HHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHH--HHHHHHHHHhcCCCCeEEEecCcCcCccHHHH
Confidence 444 455556665555 33444442222233344799999988754 667777776543225666666554 3445
Q ss_pred HHHHHHHHhhCCCeEEEEecCcc
Q 029926 156 ALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 156 l~ey~k~ae~~GikVIIAvAG~A 178 (185)
+.+=++.+...+++|||.+=|+-
T Consensus 181 i~~al~~~~~~~~Dviii~RGGG 203 (438)
T PRK00286 181 IVAAIERANARGEDVLIVARGGG 203 (438)
T ss_pred HHHHHHHhcCCCCCEEEEecCCC
Confidence 44544556555589998887763
No 493
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=33.44 E-value=1.5e+02 Score=21.01 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccC
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEA 179 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AA 179 (185)
.++++.+.+++.++++. +...+ .| ...+.+.+++.+++.+|.++-..+
T Consensus 50 ~l~~~~~~~~~~~~~~~--~~~~~-~~--~~~I~~~~~~~~~dllviG~~~~~ 97 (124)
T cd01987 50 RLAEALRLAEELGAEVV--TLPGD-DV--AEAIVEFAREHNVTQIVVGKSRRS 97 (124)
T ss_pred HHHHHHHHHHHcCCEEE--EEeCC-cH--HHHHHHHHHHcCCCEEEeCCCCCc
Confidence 34445555555655432 22111 22 233334444555666666555443
No 494
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=33.40 E-value=1.7e+02 Score=25.96 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHhCCCeeEEEEcC-------------CCCchHHHHHHHHHhhCCCeEEEEe
Q 029926 123 SDLPVMNDAARTLSDFGVPYEIKILSP-------------HQNRKGALSYALSAKERGIKIIIVG 174 (185)
Q Consensus 123 SDl~vmekA~~vLeefGIpyEvrVaSA-------------HRtPe~l~ey~k~ae~~GikVIIAv 174 (185)
.+.+.+.+.++-+++.|||+|+-++.. .|-| ...+++++..++|++|++-+
T Consensus 21 ~~~~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FP-dp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 21 KDQEDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFP-DPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred CCHHHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCC-CHHHHHHHHHHCCCEEEEEe
Confidence 456778888999999999998887764 2444 44667888888899887754
No 495
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.36 E-value=65 Score=29.10 Aligned_cols=46 Identities=22% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCccCcC
Q 029926 127 VMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVEAHL 181 (185)
Q Consensus 127 vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~AAhL 181 (185)
+.+..+..|.+-| ..|...|...+.+.++.++ ++++|+++|...-+
T Consensus 176 VGkPla~lL~~~~----atVtv~hs~T~~l~~~~~~-----ADIvv~AvG~p~~i 221 (287)
T PRK14176 176 VGKPMAAMLLNRN----ATVSVCHVFTDDLKKYTLD-----ADILVVATGVKHLI 221 (287)
T ss_pred cHHHHHHHHHHCC----CEEEEEeccCCCHHHHHhh-----CCEEEEccCCcccc
Confidence 4566666666554 4677788777778887764 69999999987644
No 496
>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor. Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.
Probab=33.35 E-value=1.8e+02 Score=25.38 Aligned_cols=60 Identities=12% Similarity=0.076 Sum_probs=37.9
Q ss_pred eEEEEecc-CCCH-----HHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 114 IVGIIMES-DSDL-----PVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 114 kVaIIMGS-~SDl-----~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
+|++|.-. +.|. ..++...+.|++.|+.......- -..+..+...+++.++.+ +|||...
T Consensus 145 ~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-~iii~~~ 210 (405)
T cd06385 145 SHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVDLVFE-EDDLINYTTLLQDIKQKG-RVIYVCC 210 (405)
T ss_pred EEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEEeecc-CCchhhHHHHHHHHhhcc-eEEEEeC
Confidence 57755433 3321 25788888999999876554322 123566777887776665 7877644
No 497
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=33.33 E-value=1.7e+02 Score=22.05 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCe-eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecCcc
Q 029926 130 DAARTLSDFGVPY-EIKILSPHQNRKGALSYALSAKERGIKIIIVGDGVE 178 (185)
Q Consensus 130 kA~~vLeefGIpy-EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG~A 178 (185)
-..+.|+++|.+. ...++. -.++.+.+.++++.+ .++++|...|.+
T Consensus 22 ~l~~~l~~~G~~~~~~~~v~--Dd~~~I~~~l~~~~~-~~dliittGG~g 68 (135)
T smart00852 22 ALAELLTELGIEVTRYVIVP--DDKEAIKEALREALE-RADLVITTGGTG 68 (135)
T ss_pred HHHHHHHHCCCeEEEEEEeC--CCHHHHHHHHHHHHh-CCCEEEEcCCCC
Confidence 3455688899875 444443 566666666665544 378877775543
No 498
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=33.26 E-value=2.9e+02 Score=23.07 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=41.3
Q ss_pred CCeEEEEeccCCC-HHHHHHHHHHHHHhCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEecC
Q 029926 112 TPIVGIIMESDSD-LPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGDG 176 (185)
Q Consensus 112 ~~kVaIIMGS~SD-l~vmekA~~vLeefGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvAG 176 (185)
..+|+++...... ....+...+.|+++|++..-. ........+...+++...+.+.++||..+.
T Consensus 141 ~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~-~~~~~~~~d~~~~v~~l~~~~~d~i~~~~~ 205 (345)
T cd06338 141 PKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYD-ETYPPGTADLSPLISKAKAAGPDAVVVAGH 205 (345)
T ss_pred CceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEE-eccCCCccchHHHHHHHHhcCCCEEEECCc
Confidence 3578888754422 245677778899999875322 223345556777777777778888876543
No 499
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=33.24 E-value=3.1e+02 Score=23.48 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHHHH-hCCCeeEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 123 SDLPVMNDAARTLSD-FGVPYEIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 123 SDl~vmekA~~vLee-fGIpyEvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.|.+...++.+.+++ .++|.-+++.. +.++..++++.+++.|++.|++..
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 477788888887775 58999888742 556788888888889999888754
No 500
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=33.24 E-value=1.3e+02 Score=24.29 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=44.4
Q ss_pred CeEEEEeccCCCHHH---HHHHHHHHHHhCC---Ce-eEEEEcCCCCchHHHHHHHHHhhCCCeEEEEec
Q 029926 113 PIVGIIMESDSDLPV---MNDAARTLSDFGV---PY-EIKILSPHQNRKGALSYALSAKERGIKIIIVGD 175 (185)
Q Consensus 113 ~kVaIIMGS~SDl~v---mekA~~vLeefGI---py-EvrVaSAHRtPe~l~ey~k~ae~~GikVIIAvA 175 (185)
.+|+|+.+.-...-+ .+.|.+.|++.|+ ++ .++|-++.=.|-....+++ ..+++.+|+..
T Consensus 4 ~ri~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~---~~~~Davi~lG 70 (144)
T PF00885_consen 4 LRIAIVVSRFNEEITDRLLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAE---SGRYDAVIALG 70 (144)
T ss_dssp EEEEEEEESTTHHHHHHHHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHH---CSTESEEEEEE
T ss_pred CEEEEEEEeccHHHHHHHHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhc---ccCccEEEEec
Confidence 579999887654432 3458999999999 33 5677889999988888885 34588888754
Done!