RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 029926
         (185 letters)



>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Escherichia coli [TaxId: 562]}
          Length = 163

 Score = 76.5 bits (188), Expect = 1e-18
 Identities = 27/73 (36%), Positives = 39/73 (53%)

Query: 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172
             V I+M S SD   M  AA       VP+ ++++S H+      S+A SA+E G ++II
Sbjct: 2   ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61

Query: 173 VGDGVEAHLSGTL 185
            G G  AHL G +
Sbjct: 62  AGAGGAAHLPGMI 74


>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
          Length = 169

 Score = 75.7 bits (186), Expect = 2e-18
 Identities = 40/73 (54%), Positives = 49/73 (67%)

Query: 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172
           P VGIIM SDSDLPVM  AA  L +FG+ YEI I+S H+       YA +A+ERGI++II
Sbjct: 1   PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60

Query: 173 VGDGVEAHLSGTL 185
            G G  AHL G +
Sbjct: 61  AGAGGAAHLPGMV 73


>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
          Length = 155

 Score = 74.9 bits (184), Expect = 4e-18
 Identities = 31/73 (42%), Positives = 43/73 (58%)

Query: 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172
            +VG+IM S SD   M  A   L +  +PYE K++S H+       YA +A+ERG+K+II
Sbjct: 2   SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61

Query: 173 VGDGVEAHLSGTL 185
            G G  AHL G +
Sbjct: 62  AGAGGAAHLPGMV 74


>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
           carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
          Length = 159

 Score = 71.1 bits (174), Expect = 1e-16
 Identities = 31/73 (42%), Positives = 41/73 (56%)

Query: 113 PIVGIIMESDSDLPVMNDAARTLSDFGVPYEIKILSPHQNRKGALSYALSAKERGIKIII 172
           P+VGIIM S SD   M  A   L++  +P+E  I+S H+       YA +A ERG+ +II
Sbjct: 3   PVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVII 62

Query: 173 VGDGVEAHLSGTL 185
            G G  AHL G  
Sbjct: 63  AGAGGAAHLPGMC 75


>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
           succinogenes [TaxId: 844]}
          Length = 336

 Score = 26.6 bits (57), Expect = 2.1
 Identities = 4/18 (22%), Positives = 12/18 (66%)

Query: 156 ALSYALSAKERGIKIIIV 173
            L  A++ +++G+  I++
Sbjct: 17  GLRAAVATQQKGLSTIVL 34


>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli
           [TaxId: 562]}
          Length = 346

 Score = 26.3 bits (56), Expect = 2.4
 Identities = 9/43 (20%), Positives = 17/43 (39%)

Query: 100 FEEENANGDSTDTPIVGIIMESDSDLPVMNDAARTLSDFGVPY 142
            ++ NA G      +VG+  +   D       A  + + G+ Y
Sbjct: 30  IKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKY 72


>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
           phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 588

 Score = 26.3 bits (56), Expect = 2.8
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 105 ANGDSTDTPIVGIIME-SDSDLPVMNDAARTLSD 137
           A+GD +  PI  +I E  + D+ +  ++ + LS 
Sbjct: 3   ADGDDSLYPIAVLIDELRNEDVQLRLNSIKKLST 36


>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
           (respiratory fumarate reductase) {Shewanella
           frigidimarina [TaxId: 56812]}
          Length = 317

 Score = 25.7 bits (55), Expect = 3.3
 Identities = 6/17 (35%), Positives = 12/17 (70%)

Query: 157 LSYALSAKERGIKIIIV 173
            + +L+AK+ G  +I+V
Sbjct: 32  FNASLAAKKAGANVILV 48


>g1pyo.1 c.17.1.1 (A:,B:) Caspase-2 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 257

 Score = 25.1 bits (54), Expect = 4.8
 Identities = 7/31 (22%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 143 EIKILSP-HQNRKGALSYALSAKERGIKIII 172
           ++K  +P        L+Y L ++ RG+ +++
Sbjct: 2   QVKPCTPEFYQTHFQLAYRLQSRPRGLALVL 32


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 25.3 bits (55), Expect = 5.8
 Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 2/20 (10%)

Query: 163 AKERGIKIIIVGDGVEAHLS 182
           A   G+ II   D V  H++
Sbjct: 75  AHTIGLGIIQ--DIVPNHMA 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 620,975
Number of extensions: 26090
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 10
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.6 bits)