BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029928
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q941D5|VPS2C_ARATH Vacuolar protein sorting-associated protein 2 homolog 3
OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1
Length = 210
Score = 322 bits (826), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 158/183 (86%), Positives = 173/183 (94%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+EKEIG+LQ EEKKLV EIKRTAK+GNEGATKILARQLIRLRQQIANLQGSRAQ+RGIAT
Sbjct: 28 IEKEIGSLQSEEKKLVLEIKRTAKSGNEGATKILARQLIRLRQQIANLQGSRAQMRGIAT 87
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
HTQAMHAH+SVA GM+GA+KAMAAM+K M+PAKQAKVMREFQKQSAQMDMTTEMMSD+ID
Sbjct: 88 HTQAMHAHTSVAAGMQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSID 147
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
DALDNDEAE+ETE+LTNQVLDEIG+D+ASQLS+APKGKI K ED SSGIDELEKRLA
Sbjct: 148 DALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAPKGKIGGKKAEDVGSSGIDELEKRLA 207
Query: 181 ALR 183
ALR
Sbjct: 208 ALR 210
>sp|Q0WTY4|VPS2B_ARATH Vacuolar protein sorting-associated protein 2 homolog 2
OS=Arabidopsis thaliana GN=VPS2.2 PE=1 SV=2
Length = 222
Score = 275 bits (703), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 136/193 (70%), Positives = 164/193 (84%), Gaps = 10/193 (5%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+E+EI +LQ EEK+LVAEIK+TAKTGNE ATKILARQL+RLRQQI NLQGSRAQIRG+ T
Sbjct: 28 IEREITSLQLEEKRLVAEIKKTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVTT 87
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
HTQA++A +S++ GMKGA+KAM AMNKQM P KQAKV+++FQKQSAQ+DMT EMMS+ ID
Sbjct: 88 HTQALYASTSISSGMKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAID 147
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASK----------NTEDASSS 170
+ LD DEAEEETE+LTNQVLDEIGV VASQLS+APKG+IA+K +++ SS
Sbjct: 148 ETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESS 207
Query: 171 GIDELEKRLAALR 183
+DELEKRLA+LR
Sbjct: 208 EVDELEKRLASLR 220
>sp|Q66IV6|CH2BB_XENLA Charged multivesicular body protein 2b-B OS=Xenopus laevis
GN=chmp2b-b PE=2 SV=1
Length = 214
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AKTGN+ A ++LA+QL++LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLEMEIKKMAKTGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
+ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 SSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTDEMINDTLDDIFDA 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
E EEE++++ NQVLDEIG++++ +++ AP +T A S GI +E+E++L AL
Sbjct: 153 SEDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSAAKSKGISDEEIERQLKAL 211
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b OS=Gallus gallus GN=CHMP2B
PE=2 SV=1
Length = 214
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 123/179 (68%), Gaps = 2/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++E++L EIK+ AKTGN+ A K+LA+QL++LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQERQLELEIKKMAKTGNKEACKVLAKQLVQLRKQKNRTYAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
++ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDA 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGK--IASKNTEDASSSGIDELEKRLAAL 182
+ EEE++++ NQVLDEIG++++ +++ AP + S +T AS+ +E+E++L AL
Sbjct: 153 SDEEEESQDIVNQVLDEIGIEISGKMAKAPSAARGLPSASTSKASTISDEEIERQLKAL 211
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b OS=Xenopus tropicalis
GN=chmp2b PE=2 SV=1
Length = 214
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AK GN+ A ++LA+QL++LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLEMEIKKMAKAGNKDACRVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
+ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 SSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDA 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
+ EEE++++ NQVLDEIG++++ +++ AP +T + SSGI +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSTSASKSSGISDEEIERQLKAL 211
>sp|Q7SYR0|CH2BA_XENLA Charged multivesicular body protein 2b-A OS=Xenopus laevis
GN=chmp2b-a PE=2 SV=1
Length = 214
Score = 137 bits (345), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 120/178 (67%), Gaps = 2/178 (1%)
Query: 7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
AL+++EK+L EIK+ AK GN+ A K+LA+QL++LR+Q +++ ++T T+ M
Sbjct: 34 ALEKQEKQLEMEIKKMAKAGNKDACKVLAKQLVQLRKQKTRTYAVSSKVTSMSTQTKVMS 93
Query: 67 AHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
+ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 94 SQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDAS 153
Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
E EEE++++ NQVLDEIG++++ +++ AP + + S+GI +E+E++L AL
Sbjct: 154 EDEEESQDIVNQVLDEIGIEISGKMAKAPSAAKGLPSASASKSTGISDEEIERQLKAL 211
>sp|Q6NXD2|CHM2B_DANRE Charged multivesicular body protein 2b OS=Danio rerio GN=chmp2b
PE=2 SV=1
Length = 214
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 122/178 (68%), Gaps = 2/178 (1%)
Query: 7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMH 66
AL+++EK+L EIK+ AKTGN A K+LA+QL+++R+Q +++ ++T T+ M+
Sbjct: 34 ALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTSMSTQTKLMN 93
Query: 67 AHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
+ +A M +K M A+NK+M+P K + ++ FQK++A+MDMT EMM+DT+D+ ++
Sbjct: 94 SQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMNDTLDEIFEDS 153
Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGI--DELEKRLAAL 182
EEE++++ NQVLDEIG++++ +++ AP + + A + GI +++E++L AL
Sbjct: 154 GDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGISDEDIERQLKAL 211
>sp|Q54DB1|CM2A2_DICDI Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium
discoideum GN=chmp2a2 PE=3 SV=1
Length = 198
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 104/155 (67%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E ALQ +EKK++ +IK+ AK G + KI+A+ L+R R I + Q++ ++
Sbjct: 28 IDRERVALQNQEKKIILDIKKMAKQGQMNSAKIMAKDLVRTRYHIQKFYEMKTQLQAVSL 87
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + + ++A MKG +KAM MN+QM + K+M EF++QS +MDM EMM+DT+D
Sbjct: 88 RIQTLQSTQAMAEAMKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMD 147
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
++ D EE+++E+ NQVLDEIG+D+ASQL AP
Sbjct: 148 QVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAP 182
>sp|Q5RAV2|CHM2B_PONAB Charged multivesicular body protein 2b OS=Pongo abelii GN=CHMP2B
PE=2 SV=1
Length = 213
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 3/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AK GN+ A K+LA+QL+ LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
++ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLAAL 182
+ EEE++++ NQVLDEIG++++ +++ AP + S +T A+ S +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b OS=Homo sapiens GN=CHMP2B
PE=1 SV=1
Length = 213
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 121/179 (67%), Gaps = 3/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AK GN+ A K+LA+QL+ LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLELEIKKMAKIGNKEACKVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
++ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLAAL 182
+ EEE++++ NQVLDEIG++++ +++ AP + S +T A+ S +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q8BJF9|CHM2B_MOUSE Charged multivesicular body protein 2b OS=Mus musculus GN=Chmp2b
PE=2 SV=1
Length = 213
Score = 133 bits (335), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 121/179 (67%), Gaps = 3/179 (1%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AK GN+ A ++LA+QL+ LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
++ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKG--KIASKNTEDASSSGIDELEKRLAAL 182
+ EEE++++ NQVLDEIG++++ +++ AP + S +T A+ S +E+E++L AL
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPSAARSLPSASTSKATISD-EEIERQLKAL 210
>sp|Q3SX42|CHM2B_BOVIN Charged multivesicular body protein 2b OS=Bos taurus GN=CHMP2B PE=2
SV=1
Length = 213
Score = 132 bits (332), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 122/181 (67%), Gaps = 7/181 (3%)
Query: 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65
AL+++EK+L EIK+ AK GN+ A ++LA+QL+ LR+Q +++ ++T T+ M
Sbjct: 33 AALEKQEKQLELEIKKMAKIGNKEACRVLAKQLVHLRKQKTRTFAVSSKVTSMSTQTKVM 92
Query: 66 HAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
++ +A M +K M A+NK+M+P K + M+ FQK++ +M+MT EM++DT+DD D
Sbjct: 93 NSQMKMAGAMSTTAKTMQAVNKKMDPQKTLQTMQNFQKENMKMEMTEEMINDTLDDIFDG 152
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSS----GIDELEKRLAA 181
+ EEE++++ NQVLDEIG++++ +++ AP A+++ AS+S +E+E++L A
Sbjct: 153 SDDEEESQDIVNQVLDEIGIEISGKMAKAPS---AARSLPSASTSKSTISDEEIERQLKA 209
Query: 182 L 182
L
Sbjct: 210 L 210
>sp|Q9SKI2|VPS2A_ARATH Vacuolar protein sorting-associated protein 2 homolog 1
OS=Arabidopsis thaliana GN=VPS2.1 PE=1 SV=2
Length = 225
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/194 (44%), Positives = 125/194 (64%), Gaps = 11/194 (5%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+E+E LQ +EKKL+ EIK+TAK G GA K++A+ LIR R QI ++Q++G++
Sbjct: 30 IERERQGLQTQEKKLINEIKKTAKQGQMGAVKVMAKDLIRTRHQIEKFYKLKSQLQGVSL 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + + ++ MKG +KAM MN+QM K+M+EF++Q+ +M+M +E+M D ID
Sbjct: 90 RIQTLKSTQAMGEAMKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAID 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI---ASKN-------TEDASSS 170
DAL+ DE EEETE+L +QVLDEIG+D+ +L AP G + A+KN T S
Sbjct: 150 DALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSG 209
Query: 171 GID-ELEKRLAALR 183
GID +L+ RL LR
Sbjct: 210 GIDSDLQARLDNLR 223
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a OS=Xenopus tropicalis
GN=chmp2a PE=2 SV=1
Length = 220
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 107/155 (69%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
M++E L+Q+EKK++A+IK+ AK G A KI+A+ L+R R+ + RA I+ ++
Sbjct: 29 MDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSL 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + +++S+A MKG +KAMA MN+Q++ + K+M EF+KQS MDM EMM+D ID
Sbjct: 89 KIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAID 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
DA+ +++ EEE++ + +QVLDE+G+ + +LS P
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a
PE=2 SV=1
Length = 220
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 107/155 (69%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E L+Q+EKK++A+IK+ AK G A KI+A+ L+R R+ + RA I+ ++
Sbjct: 29 LDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSL 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + +++S+A MKG +KAMA MN+Q++ + K+M EF+KQS MDM EMM+D ID
Sbjct: 89 KIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAID 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
DA+ +++ EEE++ + +QVLDE+G+ + +LS P
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLP 183
>sp|Q7ZW25|CHM2A_DANRE Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a
PE=2 SV=1
Length = 220
Score = 111 bits (277), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 108/155 (69%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E L+Q+EKK++A+IK+ AK G A KI+A+ L+R R+ + RA I+ ++
Sbjct: 29 LDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAKDLVRTRRYVKKFIMMRANIQAVSL 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + +++S+A MKG +KAMA MN+Q++ + K+M EF++QS MDM EMM+D ID
Sbjct: 89 KIQTLKSNNSMAQAMKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAID 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
DA+ +++ EEE++ + +QVLDE+G+ ++ +LS P
Sbjct: 149 DAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLP 183
>sp|O43633|CHM2A_HUMAN Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A
PE=1 SV=1
Length = 222
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 105/155 (67%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E L+ +EKK++A+IK+ AK G A +I+A+ L+R R+ + RA I+ ++
Sbjct: 29 LDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSL 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + +++S+A MKG +KAM MN+Q++ + K+M EF++Q+ MDM EMM+D ID
Sbjct: 89 KIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAID 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
DA+ ++E EEE++ + +QVLDE+G+ + +LS P
Sbjct: 149 DAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|Q9DB34|CHM2A_MOUSE Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a
PE=1 SV=1
Length = 222
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 61/155 (39%), Positives = 105/155 (67%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E L+ +EKK++A+IK+ AK G A +I+A+ L+R R+ + RA I+ ++
Sbjct: 29 LDRERQKLETQEKKIIADIKKMAKQGQMDAVRIMAKDLVRTRRYVRKFVLMRANIQAVSL 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q + +++S+A MKG +KAM MN+Q++ + K+M EF++Q+ MDM EMM+D ID
Sbjct: 89 KIQTLKSNNSMAQAMKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAID 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
DA+ ++E EEE++ + +QVLDE+G+ + +LS P
Sbjct: 149 DAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP 183
>sp|P36108|DID4_YEAST DOA4-independent degradation protein 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DID4 PE=1 SV=2
Length = 232
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 97/162 (59%), Gaps = 1/162 (0%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+E+E L+ ++KKLV+EIK++AK G A K+ A+ L+R R I +AQ++ I+
Sbjct: 32 LEREKRKLELQDKKLVSEIKKSAKNGQVAAAKVQAKDLVRTRNYIQKFDNMKAQLQAISL 91
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
QA+ + + M A+ +A MN+ M + ++ EF+KQS M E M + ID
Sbjct: 92 RIQAVRSSDQMTRSMSEATGLLAGMNRTMNLPQLQRISMEFEKQSDLMGQRQEFMDEAID 151
Query: 121 DAL-DNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIAS 161
+ + D + +EE +E+ N+VLDEIGVD+ SQL + P+ +++
Sbjct: 152 NVMGDEVDEDEEADEIVNKVLDEIGVDLNSQLQSTPQNLVSN 193
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A
PE=2 SV=1
Length = 220
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 91/133 (68%)
Query: 23 AKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAM 82
AK G A KI+A+ L+R R+ + RA ++ ++ Q + +++S+A+ MKG +KAM
Sbjct: 51 AKQGQMDAVKIMAKDLVRTRRYVKKFITMRANVQAVSLKIQTLKSNNSMALAMKGVTKAM 110
Query: 83 AAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 142
A MN+Q++ + K+M EF+KQ+ MDM E+M+D IDDA+ +++ EEE++ + +QVLDE
Sbjct: 111 ATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDE 170
Query: 143 IGVDVASQLSAAP 155
+G+++ +L+ P
Sbjct: 171 LGLNLTDELATLP 183
>sp|O14177|DID4_SCHPO ESCRT-III complex subunit did4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=did4 PE=3 SV=2
Length = 210
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/180 (36%), Positives = 106/180 (58%), Gaps = 3/180 (1%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+++E L Q E+ L+ EIK +AK GN GA +I AR L+RLR + ++ Q++ I+
Sbjct: 32 LDRERTKLDQRERALIQEIKGSAKAGNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISL 91
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q M + M+GA++ + MNK M A++ ++F++++ M+ EM+ + +D
Sbjct: 92 RLQTMRTSEQMMQSMRGATRLLTGMNKSMNIPAMARITQQFERENEIMEQRQEMIDENMD 151
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQL--SAAPKGKIASKNTEDASSSGIDELEKR 178
DAL+ D+ EE E + N+VLDEIGVD++ L +A G + TED + +DEL KR
Sbjct: 152 DALEEDDEEEADELV-NKVLDEIGVDLSQGLPDAATQIGTVPELKTEDNLQARLDELAKR 210
>sp|Q54GK9|CM2A1_DICDI Charged multivesicular body protein 2a homolog 1 OS=Dictyostelium
discoideum GN=chmp2a1 PE=3 SV=2
Length = 206
Score = 74.3 bits (181), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 105/182 (57%), Gaps = 4/182 (2%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
M++E+ L+ E++ + +IK+ AK G K +A L++LR Q+ ++ ++ + ++T
Sbjct: 29 MDRELNRLKIVEQEYIGKIKQLAKAGRNDEAKRMANDLVKLRGQMERMRATKTTLSAVST 88
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
T + A+ ++A M A+KAM+ MNKQ + + K M E++KQ+ +++MT EMM D +
Sbjct: 89 KTTTIKANQTMANAMASATKAMSTMNKQTDLVQLQKTMMEYEKQTQRVEMTEEMMQDMFE 148
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
D E +EE +++ ++V+DE+ +D ++ + + + + + +EL K L
Sbjct: 149 DD----EVDEEADDILSKVVDEVCLDNYQKMPSVAQKDLPYSSKTSTFKTEDEELNKLLQ 204
Query: 181 AL 182
+L
Sbjct: 205 SL 206
>sp|Q921W0|CHM1A_MOUSE Charged multivesicular body protein 1a OS=Mus musculus GN=Chmp1a
PE=1 SV=1
Length = 196
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 89/175 (50%), Gaps = 16/175 (9%)
Query: 17 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76
A++K+ + N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 77 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 129
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSAMDLQKVSAVMDRFEQQVQNLDVHTSVMEDSVSSATTLTTPQ 143
Query: 130 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIVQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q5R605|CHM1A_PONAB Charged multivesicular body protein 1a OS=Pongo abelii GN=CHMP1A
PE=2 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 17 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76
A++K+ N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 77 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 129
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQ 143
Query: 130 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIMQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q9HD42|CHM1A_HUMAN Charged multivesicular body protein 1a OS=Homo sapiens GN=CHMP1A
PE=1 SV=1
Length = 196
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 88/175 (50%), Gaps = 16/175 (9%)
Query: 17 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76
A++K+ N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALLQKNVECARVYAENAIRKKNEGVNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 77 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 129
G +K MA + K ++ A K + VM F++Q +D+ T +M D++ A +
Sbjct: 84 GVTKNMAQVTKALDKALSTMDLQKVSSVMDRFEQQVQNLDVHTSVMEDSMSSATTLTTPQ 143
Query: 130 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
E+ + L Q+ +E G++V QLS P+G AS E + S D+L +RLAALRN
Sbjct: 144 EQVDSLIMQIAEENGLEVLDQLSQLPEG--ASAVGESSVRSQEDQLSRRLAALRN 196
>sp|Q6NUD8|CHM1A_XENLA Charged multivesicular body protein 1a OS=Xenopus laevis GN=chmp1a
PE=2 SV=1
Length = 196
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 91/175 (52%), Gaps = 16/175 (9%)
Query: 17 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76
A++K+ + N ++ A IR + + N +++ +A+ Q AV MK
Sbjct: 31 AKVKKALQQKNVEVARVYAENAIRKKNEGLNWLRMASRVDAVASKVQT-------AVTMK 83
Query: 77 GASKAMAAMNKQMEPA-------KQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAE 129
G +K MA + K ++ A K + VM +F +Q +D+ T +M D++ A+ +
Sbjct: 84 GVTKNMAQVTKALDKALSSMDLQKVSAVMDKFDQQVQNLDVHTSVMEDSMSSAMTLTTPQ 143
Query: 130 EETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
E+ + L Q+ +E G++V QL+ P+G AS E ++ + D+L +RLA+LRN
Sbjct: 144 EQVDNLIVQIAEENGLEVMDQLNQLPQG--ASSVGESSTRTQEDQLSRRLASLRN 196
>sp|Q7SZB5|CHM1B_XENLA Charged multivesicular body protein 1b OS=Xenopus laevis GN=chmp1b
PE=2 SV=1
Length = 199
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F+ Q +D+ T+ M DT+ + + + + L +++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D++ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLSMEL---PQGQTGSVGTSVASTEQ-DELSQRLARLRD 197
>sp|Q6PHF0|CHM1A_DANRE Charged multivesicular body protein 1a OS=Danio rerio GN=chmp1a
PE=2 SV=1
Length = 198
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 82/168 (48%)
Query: 17 AEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76
A++K+ + N ++ A IR + + N +++ +A+ Q VA M
Sbjct: 31 AKVKKALQQKNVECARVYAENAIRKKNEGLNWLRMASRVDAVASKVQTALTMKGVAKNMT 90
Query: 77 GASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELT 136
+KA+ M+ K + VM +F+ Q +D+ T +M D++ A +++ ++L
Sbjct: 91 QVTKALDKALSSMDLQKVSAVMDKFETQVQNLDVHTSVMEDSMSSATTLSTPQQQVDDLI 150
Query: 137 NQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
Q+ +E G++V QLS P G A T + D+L +RLAALRN
Sbjct: 151 LQIAEESGLEVEDQLSQLPAGASALGETSARAQEKEDQLSRRLAALRN 198
>sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1
OS=Arabidopsis thaliana GN=VPS24-1 PE=2 SV=1
Length = 229
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 109/203 (53%), Gaps = 24/203 (11%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+E++I +Q+EE+ + IK AK + + K LA++++ R+ + L ++AQ+ I+
Sbjct: 32 IERQIRDIQKEERNVQKAIKEAAKRNDMVSAKALAKEIVSSRRTVNRLYENKAQMNSIS- 90
Query: 61 HTQAMHAHSSVAVG-----MKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMM 115
MH SVA+ + +++ M +N M+ + A M+EF K+ + + E +
Sbjct: 91 ----MHLGESVAIARTVGHLSKSAEVMKLVNNLMKAPQMAATMQEFSKEMTKAGVIEEFV 146
Query: 116 SDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAA--------PKGKIASKNTEDA 167
++ ID+ALD+++ EEE +E ++VL I + A++L A P K ++ E+A
Sbjct: 147 NEAIDNALDSEDMEEEIDEEVDKVLTAIAGETAAELPVAVRKERIKVPAQKASTSREEEA 206
Query: 168 SSSGID------ELEKRLAALRN 184
+ G+D E+ RLA +R+
Sbjct: 207 VAEGVDDEEELEEIRARLAKVRS 229
>sp|Q6DF27|CHM1B_XENTR Charged multivesicular body protein 1b OS=Xenopus tropicalis
GN=chmp1b PE=2 SV=1
Length = 199
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 76/159 (47%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M
Sbjct: 43 GNTEIARIHAENAIRQKNQGINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDTT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F+ Q +D+ T+ M DT+ + + + + L +++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSNTTTLTTPQNQVDNLLHEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASTEQ-DELSQRLARLRD 197
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 OS=Xenopus laevis GN=chmp3
PE=2 SV=3
Length = 220
Score = 60.1 bits (144), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 85/156 (54%), Gaps = 5/156 (3%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+E++K+ IK +AK GN A ILA+++++ ++ + L S+A + +
Sbjct: 30 IDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTTEMMSDTI 119
+ A V+ ++ +++ M AM ++ P QA MRE K+ + + EM+ DT
Sbjct: 90 SMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQA-TMRELSKEMMKAGIIEEMLEDTF 148
Query: 120 DDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
+ D DE EE+ E +++L E+ A L AP
Sbjct: 149 EGMEDQDEMEEQAEMEIDRILFEV---TAGALGKAP 181
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 OS=Xenopus tropicalis
GN=chmp3 PE=2 SV=4
Length = 220
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+E++K+ IK +AK GN A ILA++++ ++ + L S+A + +
Sbjct: 30 IDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ A V+ ++ +++ M AM ++ + MR+ K+ + + EM+ DT +
Sbjct: 90 SMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTFE 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
D DE EE+ E +++L EI A L AP
Sbjct: 150 GMEDQDEMEEQAEMEIDRILFEI---TAGALGKAP 181
>sp|Q9LXH5|VP242_ARATH Putative vacuolar protein sorting-associated protein 24 homolog 2
OS=Arabidopsis thaliana GN=VPS24-2 PE=2 SV=1
Length = 200
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 102/192 (53%), Gaps = 16/192 (8%)
Query: 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA 67
+++EE+ + IK + K + K LAR+++ R+ + L ++AQ+ I+ H A
Sbjct: 10 IEREERNVHKAIKDSVKRNDLVTAKALAREIVSSRRTVKRLYENKAQVNSISMHLGESIA 69
Query: 68 HSSVAVG-MKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDND 126
++V VG + + + M +N M+ + A M+ F K+ + + E +SD +D+ALD++
Sbjct: 70 -TAVTVGNLSKSGEVMKLVNSLMKAPEIAVTMQAFSKEMTKTGVIEEFVSDAVDNALDSE 128
Query: 127 EAEEETEELTNQVLDEIGVDVASQLSAA--------PKGKIASKNTEDASSSGID---EL 175
+ EEE EE ++VL I + A++L A P K + + EDA G+D EL
Sbjct: 129 DIEEEIEEEVDKVLTAIAGETAAELPEAVRKQKMNVPAQKAETLHGEDAIVEGVDAEEEL 188
Query: 176 E---KRLAALRN 184
E RLA +R+
Sbjct: 189 EAIRYRLANVRS 200
>sp|Q5ZKX1|CHM1B_CHICK Charged multivesicular body protein 1b OS=Gallus gallus GN=CHMP1B
PE=2 SV=1
Length = 199
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 4/162 (2%)
Query: 23 AKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAM 82
+ GN +I A IR + Q N A++ +A Q V M G K+M
Sbjct: 40 IQKGNMEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSM 99
Query: 83 AAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 142
A K M K + +M +F+ Q +D+ T+ M +T+ + + + + L ++ DE
Sbjct: 100 DATLKSMNLEKISALMDKFEHQFETLDVQTQQMENTMSNTTTLTTPQNQVDMLLQEMADE 159
Query: 143 IGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
G+D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 160 AGLDLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q7LBR1|CHM1B_HUMAN Charged multivesicular body protein 1b OS=Homo sapiens GN=CHMP1B
PE=1 SV=1
Length = 199
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q99LU0|CH1B1_MOUSE Charged multivesicular body protein 1b-1 OS=Mus musculus GN=Chmp1b1
PE=1 SV=1
Length = 199
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQGVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q7ZVB1|CHM1B_DANRE Charged multivesicular body protein 1b OS=Danio rerio GN=chmp1b
PE=2 SV=1
Length = 199
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/159 (29%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q + V M G K M A
Sbjct: 43 GNMEVARIHAENAIRQKNQSVNFLRMSARVDAVAARVQTAVTMNQVTKSMAGVVKGMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F++Q +D+ T M D++ + + + L ++ DE G+
Sbjct: 103 LKSMNLEKISGLMEKFERQFETLDVQTAQMEDSMSSTTTLTTPQGQVDTLMMEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLAKLRD 197
>sp|Q5E994|CHM1B_BOVIN Charged multivesicular body protein 1b OS=Bos taurus GN=CHMP1B PE=2
SV=1
Length = 199
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNMEVARIHAENAIRQKNQAVNFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
K M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LKTMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQGQVDMLLQEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S T AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGTSVASAEQ-DELSQRLARLRD 197
>sp|Q9CQD4|CH1B2_MOUSE Charged multivesicular body protein 1b-2 OS=Mus musculus GN=Chmp1b2
PE=2 SV=2
Length = 199
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 4/159 (2%)
Query: 26 GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85
GN +I A IR + Q N A++ +A Q V M G K+M A
Sbjct: 43 GNTEVARIHAENAIRQKNQAINFLRMSARVDAVAARVQTAVTMGKVTKSMAGVVKSMDAT 102
Query: 86 NKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145
+ M K + +M +F+ Q +D+ T+ M DT+ + + + L ++ DE G+
Sbjct: 103 LRSMNLEKISALMDKFEHQFETLDVQTQQMEDTMSSTTTLTTPQNQVDMLLQEMADEAGL 162
Query: 146 DVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184
D+ +L P+G+ S AS+ DEL +RLA LR+
Sbjct: 163 DLNMEL---PQGQTGSVGASVASTEQ-DELSQRLARLRD 197
>sp|O96552|CHMP1_DICDI Charged multivesicular body protein 1 OS=Dictyostelium discoideum
GN=chmp1 PE=3 SV=1
Length = 192
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 8/183 (4%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
+EK+ +Q EK ++K+ + GN +I A+ IR + Q N ++I +A+
Sbjct: 15 LEKQSKKSEQSEKAQKIKLKKAIEQGNMDGARIYAQNAIREKNQSLNYLRLASRIDAVAS 74
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ SV M K+M + M+ K +VM +F++Q +D+ + + + ++
Sbjct: 75 RVETAIRMKSVTGSMANIVKSMEKSMRNMDLEKITQVMDQFERQFEDLDVQSVYVENAMN 134
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLA 180
++ + L +QV DE G++V Q+ +AP K+ T DEL +RL
Sbjct: 135 QTTTLSTPADQVDLLISQVADEHGLNVGMQMGSAPSEKVQQGET--------DELTERLN 186
Query: 181 ALR 183
L+
Sbjct: 187 RLK 189
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 OS=Macaca fascicularis
GN=CHMP3 PE=2 SV=3
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ A VA ++ +++ M AM ++ + MRE K+ + + EM+ DT +
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLEDTFE 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
D +E EE E +++L EI A L AP
Sbjct: 150 SMDDQEEMEEAAEMEIDRILFEI---TAGALGKAP 181
>sp|Q5RAU5|CHMP3_PONAB Charged multivesicular body protein 3 OS=Pongo abelii GN=CHMP3 PE=2
SV=3
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 84/156 (53%), Gaps = 5/156 (3%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTTEMMSDTI 119
+ A VA ++ +++ M AM ++ P QA MRE K+ + + EM+ DT
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQA-TMRELSKEMMKAGIIEEMLEDTF 148
Query: 120 DDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
+ D +E EEE E +++L EI A L AP
Sbjct: 149 ESMDDQEEMEEEAEMEIDRILFEI---TAGALGKAP 181
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 OS=Bos taurus GN=CHMP3 PE=2
SV=4
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 81/155 (52%), Gaps = 3/155 (1%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ A VA ++ +++ M AM ++ + MRE K+ + + EM+ DT +
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
D +E EE E +++L EI A L AP
Sbjct: 150 SMDDQEEMEEAAEMEIDRILFEI---TAGALGKAP 181
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 OS=Homo sapiens GN=CHMP3 PE=1
SV=3
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 82/155 (52%), Gaps = 3/155 (1%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ A VA ++ +++ M AM ++ + MRE K+ + + EM+ DT +
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFE 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
D +E EEE E +++L EI A L AP
Sbjct: 150 SMDDQEEMEEEAEMEIDRILFEI---TAGALGKAP 181
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 OS=Rattus norvegicus GN=Chmp3
PE=1 SV=3
Length = 223
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTTEMMSDTI 119
+ A VA ++ +++ M AM ++ P QA MRE K+ + + EM+ DT
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQA-TMRELSKEMMKAGIIEEMLEDTF 148
Query: 120 DDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
+ D +E EE E +++L EI A L AP
Sbjct: 149 ESMDDQEEMEEAAEMEIDRILFEI---TAGALGKAP 181
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 OS=Mus musculus GN=Chmp3 PE=1
SV=3
Length = 224
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 83/156 (53%), Gaps = 5/156 (3%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ +K AK G + +LA+++IR R+ ++ L S+A + +
Sbjct: 30 VDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMNSVLM 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTTEMMSDTI 119
+ A VA ++ +++ M AM ++ P QA MRE K+ + + EM+ DT
Sbjct: 90 GMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQA-TMRELSKEMMKAGIIEEMLEDTF 148
Query: 120 DDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP 155
+ D +E EE E +++L EI A L AP
Sbjct: 149 ESMDDQEEMEEAAEMEIDRILFEI---TAGALGKAP 181
>sp|Q54P63|CHMP3_DICDI Charged multivesicular body protein 3 OS=Dictyostelium discoideum
GN=chmp3 PE=3 SV=1
Length = 207
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/189 (26%), Positives = 98/189 (51%), Gaps = 14/189 (7%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++ ++ A+ +EKK V IK K G++ + K LA++++ R+ + ++AQ+ ++
Sbjct: 28 LDTQLRAIDMQEKKTVRMIKERVKAGDQKSAKTLAKEIVNSRKAKERIYTAKAQMNSVSM 87
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
Q+ A + V + +++ M MN ++ + KVM + + + EM+SD D
Sbjct: 88 QLQSNLAMTKVQGNLAKSTEIMKMMNDLIKLPELNKVMMAMGSEMTKAGIMEEMISDVFD 147
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAP-----KGKIASKNTEDASSSGIDEL 175
+ ++ EEE E N+++DEI V Q+S+AP + ++ + ED+ EL
Sbjct: 148 --MQGEDLEEEAEMEVNKIMDEILVS-GPQVSSAPLETHQQEEVVQEKQEDS------EL 198
Query: 176 EKRLAALRN 184
RL AL++
Sbjct: 199 LDRLKALKS 207
>sp|Q6NY88|CHMP3_DANRE Charged multivesicular body protein 3 OS=Danio rerio GN=chmp3 PE=2
SV=3
Length = 221
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/195 (27%), Positives = 98/195 (50%), Gaps = 14/195 (7%)
Query: 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIAT 60
++++I +Q+EE+K+ IK AK G + ILA+++I+ ++ I L S+AQ+ +
Sbjct: 30 IDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMNSVLL 89
Query: 61 HTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120
+ + VA ++ +++ M AM ++ + MR+ K+ + + EM+ DT++
Sbjct: 90 SMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLEDTLE 149
Query: 121 DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPK-----------GKIASKNTEDASS 169
D +E EE E +++L EI A L AP G A+ E
Sbjct: 150 GMDDEEEMEEAAEAEVDKILFEI---TAGALGKAPSKVTDLPDPVAIGATAAPEEESEEE 206
Query: 170 SGIDELEKRLAALRN 184
I+E++ RLAALR+
Sbjct: 207 EEIEEMQSRLAALRS 221
>sp|O60074|DID2_SCHPO Vacuolar protein-sorting-associated protein 46
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=did2 PE=3 SV=2
Length = 200
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 9/178 (5%)
Query: 10 QEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA---MH 66
+EE+ ++K+ GN +I A IR +Q+ NL ++I +++ Q M
Sbjct: 27 KEERAEREKVKKAITKGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMR 86
Query: 67 AHSSVAVGM-KGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDN 125
A S G+ +G +AM MN +M ++VM +F+ Q +++ T M+ +
Sbjct: 87 AVSGNMAGVVRGMDRAMKTMNLEM----ISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAV 142
Query: 126 DEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALR 183
D +E+ + L V DE G++ ++ AS T A D L++RL ALR
Sbjct: 143 DTPQEDVDLLMQTVADEAGLEFNQNMNNNLSVPAASVPTPAAPVED-DNLQERLRALR 199
>sp|P36095|VPS24_YEAST Vacuolar protein-sorting-associated protein 24 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS24 PE=1
SV=1
Length = 224
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 94/192 (48%), Gaps = 13/192 (6%)
Query: 3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHT 62
+E+ LQ + ++L IK++AK + ++ A++L ++ +Q + SRAQ+ +
Sbjct: 36 RELTVLQNKTQQL---IKKSAKKNDVRTVRLYAKELYQINKQYDRMYTSRAQLDSVRMKI 92
Query: 63 QAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDA 122
++++ M ++ M +N + + M E +K+ + + +EM+ DT++
Sbjct: 93 DEAIRMNTLSNQMADSAGLMREVNSLVRLPQLRNTMIELEKELMKSGIISEMVDDTMESV 152
Query: 123 LD-NDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNTE---------DASSSGI 172
D +E +E +E N+++++ + + P ++A+ E + + +
Sbjct: 153 GDVGEEMDEAVDEEVNKIVEQYTNEKFKNVDQVPTVELAANEEEQEIPDEKVDEEADRMV 212
Query: 173 DELEKRLAALRN 184
+E+ +RL AL+N
Sbjct: 213 NEMRERLRALQN 224
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.120 0.301
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,699,299
Number of Sequences: 539616
Number of extensions: 1918929
Number of successful extensions: 11593
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 243
Number of HSP's that attempted gapping in prelim test: 11352
Number of HSP's gapped (non-prelim): 412
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 57 (26.6 bits)