Query 029928
Match_columns 185
No_of_seqs 109 out of 730
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3230 Vacuolar assembly/sort 100.0 3.6E-48 7.8E-53 302.9 22.1 184 1-184 28-223 (224)
2 KOG3232 Vacuolar assembly/sort 100.0 4.7E-41 1E-45 258.5 21.5 182 1-184 21-202 (203)
3 KOG3229 Vacuolar sorting prote 100.0 5E-41 1.1E-45 264.7 19.2 184 1-184 30-227 (227)
4 KOG3231 Predicted assembly/vac 100.0 1.8E-39 3.9E-44 248.4 19.3 182 1-184 27-208 (208)
5 PF03357 Snf7: Snf7; InterPro 99.9 6E-25 1.3E-29 171.3 7.4 156 1-158 13-170 (171)
6 KOG1656 Protein involved in gl 99.7 2.9E-14 6.3E-19 113.0 19.3 156 6-162 35-199 (221)
7 PTZ00464 SNF-7-like protein; P 99.6 5.8E-14 1.3E-18 113.9 19.7 135 30-164 58-198 (211)
8 COG5491 VPS24 Conserved protei 99.6 4.3E-14 9.3E-19 113.4 17.2 177 2-185 6-202 (204)
9 PTZ00446 vacuolar sorting prot 99.3 7.3E-10 1.6E-14 88.5 19.2 135 4-142 35-180 (191)
10 KOG2910 Uncharacterized conser 99.1 7.7E-08 1.7E-12 76.0 20.6 143 6-159 33-179 (209)
11 KOG2911 Uncharacterized conser 99.0 2.9E-08 6.2E-13 87.0 17.3 155 1-157 245-400 (439)
12 COG5491 VPS24 Conserved protei 98.3 3.2E-05 6.8E-10 62.5 14.6 134 8-148 5-149 (204)
13 KOG1655 Protein involved in va 98.3 8.9E-05 1.9E-09 59.1 16.3 138 2-143 32-174 (218)
14 PRK10698 phage shock protein P 97.6 0.0062 1.3E-07 50.0 15.6 108 1-108 57-175 (222)
15 PTZ00446 vacuolar sorting prot 97.3 0.054 1.2E-06 43.5 16.7 135 3-141 27-175 (191)
16 PF04012 PspA_IM30: PspA/IM30 97.1 0.046 9.9E-07 44.3 15.6 117 1-117 56-186 (221)
17 TIGR02977 phageshock_pspA phag 97.1 0.049 1.1E-06 44.4 15.4 107 1-107 57-174 (219)
18 PTZ00464 SNF-7-like protein; P 96.8 0.2 4.3E-06 40.9 19.2 109 35-145 60-175 (211)
19 PF03357 Snf7: Snf7; InterPro 96.8 0.0034 7.3E-08 48.4 6.0 92 2-98 7-101 (171)
20 KOG3230 Vacuolar assembly/sort 96.2 0.28 6.2E-06 39.4 13.1 106 31-143 68-174 (224)
21 KOG3229 Vacuolar sorting prote 95.9 0.75 1.6E-05 37.3 15.1 54 104-157 129-183 (227)
22 COG1842 PspA Phage shock prote 95.3 1.4 3E-05 36.3 14.6 106 1-109 57-176 (225)
23 PF03398 Ist1: Regulator of Vp 95.2 0.048 1E-06 42.7 5.5 141 6-146 16-164 (165)
24 KOG1656 Protein involved in gl 95.2 1.4 3E-05 35.7 14.6 133 8-144 33-174 (221)
25 KOG2910 Uncharacterized conser 94.5 2.1 4.4E-05 34.4 16.1 135 2-141 15-163 (209)
26 KOG3232 Vacuolar assembly/sort 94.3 2.2 4.7E-05 33.8 14.5 88 1-90 7-103 (203)
27 KOG3231 Predicted assembly/vac 94.1 1.4 2.9E-05 34.7 10.9 80 43-124 62-146 (208)
28 KOG1655 Protein involved in va 82.7 24 0.00052 28.6 12.2 69 21-90 47-117 (218)
29 KOG2027 Spindle pole body prot 77.8 51 0.0011 29.4 14.2 135 9-147 14-161 (388)
30 PF02583 Trns_repr_metal: Meta 67.0 39 0.00084 23.3 8.8 76 41-137 4-80 (85)
31 COG1937 Uncharacterized protei 66.5 42 0.00092 23.6 8.2 46 41-86 8-53 (89)
32 PF10458 Val_tRNA-synt_C: Valy 64.7 36 0.00079 22.1 6.4 62 1-64 2-64 (66)
33 PRK15039 transcriptional repre 55.0 71 0.0015 22.4 8.5 47 41-87 8-54 (90)
34 PRK11352 regulator protein Frm 53.0 78 0.0017 22.2 8.4 46 41-86 8-53 (91)
35 PF01601 Corona_S2: Coronaviru 41.6 1.3E+02 0.0029 28.4 7.6 96 51-149 232-340 (610)
36 PF07361 Cytochrom_B562: Cytoc 41.4 72 0.0016 22.8 4.8 33 16-48 69-101 (103)
37 PRK09720 cybC cytochrome b562; 40.3 74 0.0016 22.9 4.6 29 19-47 69-97 (100)
38 COG3783 CybC Soluble cytochrom 38.6 64 0.0014 23.1 4.0 30 17-46 67-96 (100)
39 PF13655 RVT_N: N-terminal dom 35.3 1.5E+02 0.0033 20.4 6.3 36 6-41 7-42 (84)
40 PF04065 Not3: Not1 N-terminal 32.9 2.8E+02 0.0062 22.9 8.0 37 2-46 48-84 (233)
41 TIGR01837 PHA_granule_1 poly(h 31.8 1.9E+02 0.0042 21.1 5.9 18 128-145 75-92 (118)
42 KOG2911 Uncharacterized conser 28.9 4.5E+02 0.0097 23.9 15.2 81 5-88 242-325 (439)
43 PF14842 FliG_N: FliG N-termin 28.8 1.2E+02 0.0027 21.5 4.3 63 74-141 34-100 (108)
44 PRK14127 cell division protein 28.7 1.8E+02 0.0039 21.2 5.2 12 171-182 86-97 (109)
45 PF09424 YqeY: Yqey-like prote 26.5 2.9E+02 0.0062 20.9 11.3 37 102-146 74-110 (143)
46 PLN03086 PRLI-interacting fact 26.3 4.8E+02 0.011 24.6 8.7 63 3-71 7-69 (567)
47 smart00685 DM14 Repeats in fly 24.7 2E+02 0.0044 18.6 6.2 32 7-38 3-34 (59)
48 cd07631 BAR_APPL1 The Bin/Amph 24.4 3.8E+02 0.0082 22.0 6.8 25 94-118 42-66 (215)
49 PRK15058 cytochrome b562; Prov 23.9 1.9E+02 0.0041 21.7 4.6 31 17-47 95-125 (128)
50 KOG0972 Huntingtin interacting 23.8 4.9E+02 0.011 22.7 12.5 79 58-143 246-324 (384)
51 PLN02943 aminoacyl-tRNA ligase 23.5 2.3E+02 0.0051 28.3 6.5 62 2-65 888-950 (958)
52 PF08653 DASH_Dam1: DASH compl 23.4 1.4E+02 0.0029 19.3 3.3 30 92-122 8-37 (58)
53 TIGR03513 GldL_gliding gliding 23.2 4.1E+02 0.0089 21.6 12.6 16 71-86 135-150 (202)
54 PRK08869 flagellin; Reviewed 23.0 5.1E+02 0.011 22.8 8.0 84 72-157 287-370 (376)
55 PF11286 DUF3087: Protein of u 22.9 2E+02 0.0043 22.6 4.8 27 8-34 88-114 (165)
56 COG1842 PspA Phage shock prote 22.9 4.3E+02 0.0093 21.7 11.5 62 44-109 125-186 (225)
57 PF10158 LOH1CR12: Tumour supp 22.5 3.4E+02 0.0073 20.3 11.2 59 27-92 62-120 (131)
58 KOG2991 Splicing regulator [RN 22.4 4.9E+02 0.011 22.2 7.4 34 2-36 107-140 (330)
59 PF07743 HSCB_C: HSCB C-termin 21.9 2.4E+02 0.0052 18.4 6.5 40 6-49 34-73 (78)
60 COG1344 FlgL Flagellin and rel 21.8 5.3E+02 0.011 22.3 8.4 82 72-155 271-352 (360)
61 PF08776 VASP_tetra: VASP tetr 21.5 1.9E+02 0.004 17.3 3.3 18 91-108 5-23 (40)
62 TIGR00207 fliG flagellar motor 21.0 4E+02 0.0087 23.1 6.8 76 74-154 38-118 (338)
63 PRK10698 phage shock protein P 20.8 4.6E+02 0.01 21.2 10.4 36 42-77 123-158 (222)
64 PF00231 ATP-synt: ATP synthas 20.8 1.9E+02 0.0041 24.3 4.6 25 54-78 2-26 (290)
65 TIGR03513 GldL_gliding gliding 20.4 4.7E+02 0.01 21.2 8.9 76 31-108 115-191 (202)
66 PF10191 COG7: Golgi complex c 20.2 8.1E+02 0.018 23.9 13.6 19 3-21 70-88 (766)
67 PF13623 SurA_N_2: SurA N-term 20.2 2.3E+02 0.0049 21.5 4.6 57 88-148 48-107 (145)
No 1
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.6e-48 Score=302.86 Aligned_cols=184 Identities=51% Similarity=0.704 Sum_probs=170.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
||||+.+++-++||+..+||+.+|.|+++++||+|++|||+|+++.+|+.+++||.+|+.++++.+++..|+++|+++|+
T Consensus 28 leRer~~le~qeKklvaeIKk~AK~gq~~A~KimAkdLvRtR~~i~kf~~~kaqiqaVSl~iQtlkss~sma~aMkGaTk 107 (224)
T KOG3230|consen 28 LERERQKLELQEKKLVAEIKKTAKQGQMDAVKIMAKDLVRTRRYIKKFQNMKAQIQAVSLRIQTLKSSTSMAQAMKGATK 107 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA 160 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~ 160 (185)
+|..||+.||||+++++|++|++|.+.|++.+|||+|++|++++++++|||+|++|+|||||+|++++.+|.++|+...+
T Consensus 108 am~~MNrqmnlpq~qkIm~eFekQse~Mdm~~Emm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl~~qL~~~P~~~~~ 187 (224)
T KOG3230|consen 108 AMAGMNRQMNLPQIQKIMQEFEKQSEIMDMKEEMMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDLASQLSSLPSAAGS 187 (224)
T ss_pred HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHcccHHHHhccCcccccc
Confidence 99999999999999999999999999999999999999999999889999999999999999999999999999983221
Q ss_pred C--------CCc----ccCCCccHHHHHHHHHhhcC
Q 029928 161 S--------KNT----EDASSSGIDELEKRLAALRN 184 (185)
Q Consensus 161 ~--------~~~----~~~~~~~~d~l~~RL~~Lr~ 184 (185)
. +++ .+.....+|+|++||++||.
T Consensus 188 ~~~a~~ig~~~a~~~gs~~~~~~dddLqaRL~~Lrk 223 (224)
T KOG3230|consen 188 LPIAKTIGGKKAEAAGSEFHSDADDDLQARLDNLRK 223 (224)
T ss_pred cchhhccCCccccccccccCCCchhHHHHHHHHHhc
Confidence 1 111 11123458999999999996
No 2
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-41 Score=258.51 Aligned_cols=182 Identities=26% Similarity=0.393 Sum_probs=165.6
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|.|+.++|+++||..+.++|+|+++||++.|||||.++||++++..+|+++++++++|.+|++++.+|.+++.+|.++++
T Consensus 21 L~r~a~kceKeEK~Ek~K~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqTavtmr~Vt~sM~gVvK 100 (203)
T KOG3232|consen 21 LQRQAKKCEKEEKAEKAKLKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQTAVTMRKVTKSMAGVVK 100 (203)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA 160 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~ 160 (185)
.|.+..+.|||++|+.+|+.|+++|+++++..++|+++|.+++.-+.|.+++|.|+.+|+||+|++++..||....+..+
T Consensus 101 ~md~alktmNLekis~~MDkFE~qFedldvqt~~me~~m~~st~l~tpq~~Vd~Lmq~vADeaGlElnq~lp~~~~~a~~ 180 (203)
T KOG3232|consen 101 SMDSALKTMNLEKISQLMDKFEKQFEDLDVQTEVMEKAMSGSTALSTPQGDVDSLMQQVADEAGLELNQELPQNVVPAIS 180 (203)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhHHHHHHHhccCcccccCChhHHHHHHHHHHHHhchhhhhcCCCCCCCCcC
Confidence 99999999999999999999999999999999999999999888888999999999999999999999988753222222
Q ss_pred CCCcccCCCccHHHHHHHHHhhcC
Q 029928 161 SKNTEDASSSGIDELEKRLAALRN 184 (185)
Q Consensus 161 ~~~~~~~~~~~~d~l~~RL~~Lr~ 184 (185)
.+ ++....++|+|.+||++||+
T Consensus 181 ~~--t~~~~~e~d~L~qRLaaLR~ 202 (203)
T KOG3232|consen 181 VK--TSAVVDEEDDLTQRLAALRA 202 (203)
T ss_pred CC--CccccchhhHHHHHHHHHhc
Confidence 21 11222344999999999996
No 3
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5e-41 Score=264.65 Aligned_cols=184 Identities=27% Similarity=0.447 Sum_probs=165.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|||+++.++++++|.+..||+++|+||..+||+|||++|+.|+++.++|.++|||+||.++|..+.++..+.++|++||.
T Consensus 30 ldrqir~iqree~kv~~~iK~aAKknD~~t~~iLAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~r~~G~lqkSte 109 (227)
T KOG3229|consen 30 LDRQIRDIQREEEKVQKSIKQAAKKNDKDTCRILAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATLRVAGSLQKSTE 109 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHHHHHhhHHhHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCC-
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI- 159 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~- 159 (185)
+|+.||+++.+|+|..||.+|++|+++.||++||++|+|+++.|+.+.++++|++|++||.+|+.+-.+.+|.+|....
T Consensus 110 vMk~v~sLvk~Pel~~TMrelSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a~~~~~~ 189 (227)
T KOG3229|consen 110 VMKAVNSLVKLPELAATMRELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLAVTATLA 189 (227)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcchHHHHh
Confidence 9999999999999999999999999999999999999999999888899999999999999999877777776665431
Q ss_pred --CCCCc-c-----c-----CCCccHHHHHHHHHhhcC
Q 029928 160 --ASKNT-E-----D-----ASSSGIDELEKRLAALRN 184 (185)
Q Consensus 160 --~~~~~-~-----~-----~~~~~~d~l~~RL~~Lr~ 184 (185)
+.... + . ..++++.+++.||++||+
T Consensus 190 ~~~~~~a~p~~~~~a~~d~~e~eE~le~mr~RLa~lrs 227 (227)
T KOG3229|consen 190 AVPAEKASPSAKEDAAEDGVEEEEELEEMRSRLAALRS 227 (227)
T ss_pred cCccccCCCcchhhhhhccchHHHHHHHHHHHHHHhcC
Confidence 11100 0 0 011346889999999996
No 4
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-39 Score=248.44 Aligned_cols=182 Identities=38% Similarity=0.637 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|+|++++++++|++|+.+||+.++.||.++||+|||+||..|||..+-+.+.+++.+++.|-..+.++.+++++|...++
T Consensus 27 ierdRr~me~~Ek~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaK 106 (208)
T KOG3231|consen 27 IERDRRAMEKQEKQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAK 106 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCC
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIA 160 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~ 160 (185)
.|+.||+.|+|+++..+|.+|++..++|++++|||+|++|+.+|..++++|.+.+|+||||||||++++++.++|+....
T Consensus 107 TM~amNk~M~pek~~~tmr~FQ~anmKMemTeEMiNDTLDdild~sgDeeEs~aiVNqVLDEIGIEisgKma~~P~a~s~ 186 (208)
T KOG3231|consen 107 TMQAMNKKMDPEKTLQTMRNFQKANMKMEMTEEMINDTLDDILDGSGDEEESQAIVNQVLDEIGIEISGKMAKAPSARSL 186 (208)
T ss_pred HHHHHHccCCHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHhcCCCcHHHHHHHHHHHHHHhhhhhcchhccCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974332
Q ss_pred CCCcccCCCccHHHHHHHHHhhcC
Q 029928 161 SKNTEDASSSGIDELEKRLAALRN 184 (185)
Q Consensus 161 ~~~~~~~~~~~~d~l~~RL~~Lr~ 184 (185)
+.. ......++|+++.|++||+
T Consensus 187 ~~~--st~kat~~Die~QLa~Lrs 208 (208)
T KOG3231|consen 187 PSA--STSKATISDIERQLAALRS 208 (208)
T ss_pred Ccc--ccCCCcHHHHHHHHHHhcC
Confidence 211 2234678999999999985
No 5
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=99.91 E-value=6e-25 Score=171.33 Aligned_cols=156 Identities=30% Similarity=0.450 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|+|++.+|+.+.+++..+||+++++|+...|++|++..++.+++..+++.+..+|+++..+|+++..+..+..+|+.+++
T Consensus 13 L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~k~~~~~~~~~~~l~~~~~~ie~a~~~~~v~~al~~~~~ 92 (171)
T PF03357_consen 13 LEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLEKQLEKLLNQLSNLESVLLQIETAQSNQQVVKALKQSSK 92 (171)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS----SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh--hhhcccCCCCC
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV--ASQLSAAPKGK 158 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~--~~~l~~~P~~~ 158 (185)
+|+.+|+.++++++..+|++|..+++.++.++++|++.++.. +++++++++++++++++|++.+. ...||++|++.
T Consensus 93 ~Lk~~~~~i~~~~v~~~~d~~~e~~e~~~ei~~~l~~~~~~~--~~~dd~ele~eL~~l~~e~~~~~~~~~~lp~~P~~~ 170 (171)
T PF03357_consen 93 ALKKINKQINLDKVEKLMDDFQEEMEDQDEISEALSDSMDQV--DDVDDEELEEELEQLEDEIEEEEEEKQQLPSVPSTE 170 (171)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHHHTS------------------TTSTTCHHHHHHHCCCTTS--SS-SS---HH-
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHccccCC--CCCCHHHHHHHHHHHHHHHhhhhhccccCCcCCCCC
Confidence 999999999999999999999999999999999999988764 33457789999999999999988 78888888764
No 6
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=2.9e-14 Score=113.02 Aligned_cols=156 Identities=24% Similarity=0.290 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 029928 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIR-LRQQIANLQGSRAQIRGIATH---TQAMHAHSSVAVGMKGASKA 81 (185)
Q Consensus 6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr-~rk~~~~l~~~~aql~sv~~~---l~~~~s~~~~~~~m~~~~~~ 81 (185)
+|-+--++++..++...+++.-... |..|-++++ +|.+..+|.+.-.-|..+..| |+++..+..+..+|+..+++
T Consensus 35 KKqe~Le~ki~~e~e~~A~k~~tkN-KR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~~~A~A 113 (221)
T KOG1656|consen 35 KKQEFLEKKIEQEVENNARKYGTKN-KRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMGSAAKA 113 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHHHHHHH
Confidence 4556667777788787666665554 445555554 555555565555555555555 56888899999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhh---hhcccCCC
Q 029928 82 MAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA---SQLSAAPK 156 (185)
Q Consensus 82 m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~---~~l~~~P~ 156 (185)
|+.+++.||+.+|..+|+++..|.+.+.-+++.|+..++ ..+|+++...|.|+|-+..++.-.+++. ..||++|+
T Consensus 114 mK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeeld~~ll~~~~p~v~LP~vPs 193 (221)
T KOG1656|consen 114 MKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEELDKELLDIRAPPVPLPDVPS 193 (221)
T ss_pred HHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCc
Confidence 999999999999999999999999999999999999986 3488888888888888888887766543 25777887
Q ss_pred CCCCCC
Q 029928 157 GKIASK 162 (185)
Q Consensus 157 ~~~~~~ 162 (185)
+.+|..
T Consensus 194 ~~lPa~ 199 (221)
T KOG1656|consen 194 IALPAK 199 (221)
T ss_pred cccCcc
Confidence 777643
No 7
>PTZ00464 SNF-7-like protein; Provisional
Probab=99.64 E-value=5.8e-14 Score=113.86 Aligned_cols=135 Identities=20% Similarity=0.223 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 029928 30 ATKILARQLIRLRQ----QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQS 105 (185)
Q Consensus 30 ~ari~Ak~lvr~rk----~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~ 105 (185)
+.|..|..++|.|| +..++......|+.+...|+++..+..+..+|+.++++|+.+|+.|++.+|..+|+++..++
T Consensus 58 ~~K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~kaLK~~~k~i~id~Vd~l~Dei~E~~ 137 (211)
T PTZ00464 58 RHKQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKTLKKQFKKLNVDKVEDLQDELADLY 137 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 35888999999888 34457778888899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCCCCCCc
Q 029928 106 AQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKIASKNT 164 (185)
Q Consensus 106 ~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~~~~~~ 164 (185)
+..+-++++++..++ +.+|+++.++|.++|...+..|.....-+..|++|+..+|..+.
T Consensus 138 e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~e~~~~~l~~~~~~p~~~~~~~~~ 198 (211)
T PTZ00464 138 EDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEKEADASYLADALAVPGTKLPDVPT 198 (211)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhccccchhhhccccCCCCCCCCCCC
Confidence 999999999998764 34565666666666666655544444446678888888765443
No 8
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=99.62 E-value=4.3e-14 Score=113.40 Aligned_cols=177 Identities=23% Similarity=0.292 Sum_probs=118.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKTG--NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGAS 79 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakkg--~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~ 79 (185)
+|++.++-.+.+...+....+.++- .....+++++.+++.|++..|+...+++|+++. ++....-+|..++
T Consensus 6 ~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~-------~~~~e~~~m~~v~ 78 (204)
T COG5491 6 ERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLD-------TMLFEKVVMRQVS 78 (204)
T ss_pred HHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh
Confidence 5666666666666666665555443 344567777777776666655555555555544 4445555566666
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHHHHHhhhhH---HHhhhhhccccc--chhhHHHHHHHHHHHHHHhcchhhhhccc
Q 029928 80 KAMAAMNKQME-PAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDALD--NDEAEEETEELTNQVLDEIGVDVASQLSA 153 (185)
Q Consensus 80 ~~m~~~n~~~~-~~~l~~~M~~f~ke~~~~~i~~---e~m~d~~~~~~~--~~~~eee~d~lv~qvl~E~~~~~~~~l~~ 153 (185)
+.|...+..|| ++.|.++|+.|+..+..++... ++|.+.++.+.+ ..++.+++|+++++|++|+|+++.....+
T Consensus 79 ~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~lel~~~~~~ 158 (204)
T COG5491 79 GDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIGLELDESEQS 158 (204)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhhhhhhhHhhc
Confidence 66666666677 8899999999999999998888 677776666553 44678899999999999999999855555
Q ss_pred CCCC-----CCCCCCccc-------CCCccHHHHHHHHHhhcCC
Q 029928 154 APKG-----KIASKNTED-------ASSSGIDELEKRLAALRNP 185 (185)
Q Consensus 154 ~P~~-----~~~~~~~~~-------~~~~~~d~l~~RL~~Lr~~ 185 (185)
+|.. ..+....++ .+...++.|++||..|+++
T Consensus 159 ~~~~~~~~~~~~a~~~~ea~~ileea~~~aE~~l~e~~~~L~~~ 202 (204)
T COG5491 159 LPANVVENGSVPAAVSPEARKILEEAEKIAEDRLQERLRELPAL 202 (204)
T ss_pred chhhhhcccccccccChhhhhhHHHHHhhHHHHHHHHHHhcccc
Confidence 5541 111100111 1123479999999999863
No 9
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=99.30 E-value=7.3e-10 Score=88.50 Aligned_cols=135 Identities=19% Similarity=0.342 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHHHHHH-------HHHHHcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 4 EIGALQQEEKKLVAEI-------KRTAKTGNEGATKILARQLIRLRQ----QIANLQGSRAQIRGIATHTQAMHAHSSVA 72 (185)
Q Consensus 4 e~~kle~ee~k~~~~i-------k~aakkg~~~~ari~Ak~lvr~rk----~~~~l~~~~aql~sv~~~l~~~~s~~~~~ 72 (185)
.+..|++.++.+..+| |+++++|+... |..++|.|| +..+++.....|+.+...|+.+..+..+.
T Consensus 35 ~~~~L~krq~~Le~kIe~e~~~Ak~~~~~~kk~~----Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~~~~ev~ 110 (191)
T PTZ00446 35 AIDALEKKQVQVEKKIKQLEIEAKQKVEQNQMSN----AKILLKRKKLYEQEIENILNNRLTLEDNMINLENMHLHKIAV 110 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444 55566666443 777777766 33444455555666667788999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHH
Q 029928 73 VGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 142 (185)
Q Consensus 73 ~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E 142 (185)
.+|+.++++|+.+|+.|++++|..+|+++..+++..+-++++++..+.+..|+++.++|.++|..+-+++
T Consensus 111 ~aLk~g~~aLK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~e~l~~ 180 (191)
T PTZ00446 111 NALSYAANTHKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKEQTMEE 180 (191)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999876433456666666766666655544
No 10
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=99.08 E-value=7.7e-08 Score=76.00 Aligned_cols=143 Identities=14% Similarity=0.245 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 029928 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-GSRAQIRGIAT---HTQAMHAHSSVAVGMKGASKA 81 (185)
Q Consensus 6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~-~~~aql~sv~~---~l~~~~s~~~~~~~m~~~~~~ 81 (185)
+++++.....+...|++++.|..+.|+ -+++++++...|+ +...||..+.. .|.-..-..+|...++..+.+
T Consensus 33 kR~e~~le~Er~~Ar~lird~rKdrAl----llLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft~vqk~V~~gLk~GN~~ 108 (209)
T KOG2910|consen 33 KRLEKQLEAERQLARDLIRDGRKDRAL----LLLKKKRYQEELLTQTDNQLINLEQMVSDIEFTQVQKKVMEGLKQGNEA 108 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666778888888887644 4555555555544 45555555544 444455566789999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCCCC
Q 029928 82 MAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKGKI 159 (185)
Q Consensus 82 m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~~~ 159 (185)
++++|+.|++..+.++|++-....+--+-+.+|+++.|.. .|.++..+|.|.+......+ .++|.+|+..+
T Consensus 109 lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~EldaLese~~~e------~e~PevPs~ep 179 (209)
T KOG2910|consen 109 LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDALESELEVE------AELPEVPSTEP 179 (209)
T ss_pred HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHHHhhhh------hhcCCCCCCCC
Confidence 9999999999999999999999999999999999999884 44444555666665555444 56788888753
No 11
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.02 E-value=2.9e-08 Score=87.00 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=130.0
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|.|++..|+.+-++...+++.+.|.|....|..|++.--+.-|...+......+|++|-.++.++.++.-+.++++..+.
T Consensus 245 L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl~AyksGs~ 324 (439)
T KOG2911|consen 245 LAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVLQAYKSGSE 324 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHH
Confidence 57899999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC
Q 029928 81 AMAAMNK-QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG 157 (185)
Q Consensus 81 ~m~~~n~-~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~ 157 (185)
+|+.++. ...++++..+|++...-++...-+++.|....-+..|. .+|+++.++++++.+..-.-+--+|..|+.
T Consensus 325 alK~il~~~~s~ekVed~Ldev~et~d~~~EV~~~la~~~~~~~d~--~de~lEkEL~~L~~D~~k~e~~~lp~~~~s 400 (439)
T KOG2911|consen 325 ALKAILAQGGSTEKVEDVLDEVNETLDRQEEVEDALASYNVNNIDF--EDEDLEKELEDLEADEKKNEDLVLPLNSVS 400 (439)
T ss_pred HHHHHHhccCChhhHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCcc--chHHHHHHHHHHHhccccCCccCCCCCCch
Confidence 9999998 56778899999999999999998888888877654443 246666666666655543222334444433
No 12
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=98.34 E-value=3.2e-05 Score=62.46 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA--NLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAM 85 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~--~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~ 85 (185)
+++..++....+|.-.++|.....++-.+.-.++|.... ++..+.++|+.+.++| +....+-.-.-+|..+
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRL-------qs~~~~~~e~~~m~~v 77 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRL-------QSLDTMLFEKVVMRQV 77 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 778888888888888888876655544444445444444 6666666666666654 3556666667788888
Q ss_pred HhcCCHHHHHHH----HHHHHHHHHHhhhhHHHhh---hhhcccccchh--hHHHHHHHHHHHHHHhcchhh
Q 029928 86 NKQMEPAKQAKV----MREFQKQSAQMDMTTEMMS---DTIDDALDNDE--AEEETEELTNQVLDEIGVDVA 148 (185)
Q Consensus 86 n~~~~~~~l~~~----M~~f~ke~~~~~i~~e~m~---d~~~~~~~~~~--~eee~d~lv~qvl~E~~~~~~ 148 (185)
.+.+........ +..+.+.|+.+.+.=|.+. +.+....+... +..+..+.++..+..+.=+++
T Consensus 78 ~~~~~~a~~~mnel~~i~ri~~~~et~~~~mE~~~~~le~m~e~~~v~~~~~v~~~l~~lde~v~~v~pEi~ 149 (204)
T COG5491 78 SGDMAKAAMYMNELESIRRIMQLFETQFLALELVQLRLETMDELMDVVVGDPVLEDLEELDELVNKVLPEIG 149 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhhhhHHHHHHHHHhhchhhh
Confidence 776444444332 2234455555554445454 34443333333 334444455555544443443
No 13
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=8.9e-05 Score=59.10 Aligned_cols=138 Identities=19% Similarity=0.248 Sum_probs=101.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKTGN-EGATKILARQLIRLRQQI----ANLQGSRAQIRGIATHTQAMHAHSSVAVGMK 76 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakkg~-~~~ari~Ak~lvr~rk~~----~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~ 76 (185)
+.-|.+|+.+=-+++.+|++. +-|. ..+.|.-|-.+++.||.. ..|+.-.=.|+.+....++...+.....+|+
T Consensus 32 e~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK 110 (218)
T KOG1655|consen 32 EKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQATVAAMK 110 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888887 4453 345666676666666532 3333334445666777777888888899999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928 77 GASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 77 ~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~ 143 (185)
...+.|+...+.+++.+|...=+++.--|+..+.++|.+....+... .++++.+.+++-+.+|.
T Consensus 111 ~~~k~mK~~ykkvnId~IedlQDem~Dlmd~a~EiQE~Lgr~y~~pe---ide~dL~aELdaL~~E~ 174 (218)
T KOG1655|consen 111 DTNKEMKKQYKKVNIDKIEDLQDEMEDLMDQADEIQEVLGRNYNTPD---IDEADLDAELDALGQEL 174 (218)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC---cCHHHHHHHHHHHHhHh
Confidence 99999999999999999998888888888888999999888776532 23455555555554444
No 14
>PRK10698 phage shock protein PspA; Provisional
Probab=97.60 E-value=0.0062 Score=49.96 Aligned_cols=108 Identities=10% Similarity=0.212 Sum_probs=75.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHH-------HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKI-------LARQLIRLRQQIANLQ----GSRAQIRGIATHTQAMHAHS 69 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari-------~Ak~lvr~rk~~~~l~----~~~aql~sv~~~l~~~~s~~ 69 (185)
++|++..++....+...+...|+.+|+.+-||- |+..+-..+.+..... .++.++..+..+|..+.+-.
T Consensus 57 ~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~ 136 (222)
T PRK10698 57 LTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQ 136 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999988 8888777766554443 45666666666676666666
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 029928 70 SVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM 108 (185)
Q Consensus 70 ~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~ 108 (185)
.+.-+=..++.+...+|..+.--.....|..|++--++.
T Consensus 137 ~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki 175 (222)
T PRK10698 137 QALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRI 175 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 555555566666666666555444456666655544444
No 15
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=97.26 E-value=0.054 Score=43.48 Aligned_cols=135 Identities=13% Similarity=0.046 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQ---------QIANLQGSRAQIRGIATHTQAMHAHSSVAV 73 (185)
Q Consensus 3 Re~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk---------~~~~l~~~~aql~sv~~~l~~~~s~~~~~~ 73 (185)
+-|-+|......+.++.+..-++ ++.....|+.+++..+ ....|.....++++-...|+.+..+...+.
T Consensus 27 ~AIl~Lk~~~~~L~krq~~Le~k--Ie~e~~~Ak~~~~~~kk~~Al~~LkrKK~~E~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 27 KAILKNREAIDALEKKQVQVEKK--IKQLEIEAKQKVEQNQMSNAKILLKRKKLYEQEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666554433 3334455676665433 233333444555555555666666555555
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 029928 74 GMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEETEELTNQVLD 141 (185)
Q Consensus 74 ~m~~~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~ 141 (185)
.=..+..+|+..+.. +..+.+-| ++++.-++.+ --..+-|++++.....++.+++|++++++.+..
T Consensus 105 ~~~ev~~aLk~g~~a--LK~~~k~~~idkVd~lmDei~E~~e~~~EIseaLs~~~~~~~DEdELe~ELe~Le~ 175 (191)
T PTZ00446 105 LHKIAVNALSYAANT--HKKLNNEINTQKVEKIIDTIQENKDIQEEINQALSFNLLNNVDDDEIDKELDLLKE 175 (191)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 555666677776665 34443322 2333333333 122233445555433233456666666665544
No 16
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=97.14 E-value=0.046 Score=44.34 Aligned_cols=117 Identities=13% Similarity=0.243 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ-----------GSRAQIRGIATHTQAMHAHS 69 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~-----------~~~aql~sv~~~l~~~~s~~ 69 (185)
|+|++..++....+...+++.|+++|+.+.||-++........+...|. .++.+|..+..++....+-.
T Consensus 56 le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 56 LERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999999999999999988888877766555444 34444444555555555444
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 029928 70 SVAVGMKGASKAMAAMNKQ---MEPAKQAKVMREFQKQSAQMDMTTEMMSD 117 (185)
Q Consensus 70 ~~~~~m~~~~~~m~~~n~~---~~~~~l~~~M~~f~ke~~~~~i~~e~m~d 117 (185)
.+..+-..++.+-..++.. +++......+..++.....+.-..+.+.+
T Consensus 136 ~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~er~e~ki~~~ea~a~a~~e 186 (221)
T PF04012_consen 136 EELKARENAAKAQKKVNEALASFSVSSAMDSFERMEEKIEEMEARAEASAE 186 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444434444444444433 23333333444444444444333333333
No 17
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=97.10 E-value=0.049 Score=44.40 Aligned_cols=107 Identities=10% Similarity=0.183 Sum_probs=64.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQI-----------ANLQGSRAQIRGIATHTQAMHAHS 69 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~-----------~~l~~~~aql~sv~~~l~~~~s~~ 69 (185)
++|++..++....+...+.+.|+++|+.+-||-.+..-.....+. .....++.+|..+..++..+.+..
T Consensus 57 ~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~ 136 (219)
T TIGR02977 57 LERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQ 136 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999997776544332222222 222345555555666666666655
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 029928 70 SVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ 107 (185)
Q Consensus 70 ~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~ 107 (185)
...-+=...+.+...+|..+.--.+...+..|++--++
T Consensus 137 ~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~k 174 (219)
T TIGR02977 137 KALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERR 174 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 54333344555555555544333344555555554444
No 18
>PTZ00464 SNF-7-like protein; Provisional
Probab=96.84 E-value=0.2 Score=40.88 Aligned_cols=109 Identities=16% Similarity=0.126 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHHHHHh---h
Q 029928 35 ARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKV--MREFQKQSAQM---D 109 (185)
Q Consensus 35 Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~--M~~f~ke~~~~---~ 109 (185)
-+-+.+.=+....|.....++.+....|.....+......=..+..+|+..++. +..+.+- +++.+.-++.+ -
T Consensus 60 K~~Al~~LK~KK~~E~ql~~l~~q~~nleq~~~~ie~a~~~~~vv~amk~g~ka--LK~~~k~i~id~Vd~l~Dei~E~~ 137 (211)
T PTZ00464 60 KQRAMQLLQQKRMYQNQQDMMMQQQFNMDQLQFTTESVKDTKVQVDAMKQAAKT--LKKQFKKLNVDKVEDLQDELADLY 137 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHHH
Confidence 444444555666666667777777777777777666666667777888888877 4445443 33344433333 2
Q ss_pred hhHHHhhhhhccccc--chhhHHHHHHHHHHHHHHhcc
Q 029928 110 MTTEMMSDTIDDALD--NDEAEEETEELTNQVLDEIGV 145 (185)
Q Consensus 110 i~~e~m~d~~~~~~~--~~~~eee~d~lv~qvl~E~~~ 145 (185)
-..+=|++++...++ ++.+++|++++++.+..|...
T Consensus 138 e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~~~ 175 (211)
T PTZ00464 138 EDTQEIQEIMGRAYDVPDDIDEDEMLGELDALDFDMEK 175 (211)
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 333456677777664 356799999999999988643
No 19
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=96.81 E-value=0.0034 Score=48.45 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=63.9
Q ss_pred hhhHHHHHHHHHHHHHHHHH---HHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKR---TAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA 78 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~---aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~ 78 (185)
...+.+|++..+++..+|++ -+++--..+-+..|+.+.+.++... +...++.....+|+........+.....+
T Consensus 7 k~~~~~L~~~~~~le~~i~~~~~~~k~~~~~~~~~~A~~~lk~~k~~~---k~~~~~~~~~~~l~~~~~~ie~a~~~~~v 83 (171)
T PF03357_consen 7 KKTIRRLEKQIKRLEKKIKKLEKKAKKAIKKGNKERAKIYLKRKKRLE---KQLEKLLNQLSNLESVLLQIETAQSNQQV 83 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHCTT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999888874 3444555667888888888776654 45567777888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 029928 79 SKAMAAMNKQMEPAKQAKVM 98 (185)
Q Consensus 79 ~~~m~~~n~~~~~~~l~~~M 98 (185)
..+|+..++. +.++.+.|
T Consensus 84 ~~al~~~~~~--Lk~~~~~i 101 (171)
T PF03357_consen 84 VKALKQSSKA--LKKINKQI 101 (171)
T ss_dssp SSS----SHH--HHHHHHST
T ss_pred HHHHHHHHHH--HHHHHHhh
Confidence 8888888876 44454443
No 20
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.28 Score=39.41 Aligned_cols=106 Identities=14% Similarity=0.265 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-hh
Q 029928 31 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQ-MD 109 (185)
Q Consensus 31 ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~-~~ 109 (185)
.|-|.+.++..| .++.....+++++.+.-+-+.+|.-++.+|....+.|.--. +.+|..-...-+..|+- -.
T Consensus 68 tR~~i~kf~~~k---aqiqaVSl~iQtlkss~sma~aMkGaTkam~~MNrqmnlpq----~qkIm~eFekQse~Mdm~~E 140 (224)
T KOG3230|consen 68 TRRYIKKFQNMK---AQIQAVSLRIQTLKSSTSMAQAMKGATKAMAGMNRQMNLPQ----IQKIMQEFEKQSEIMDMKEE 140 (224)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhccChHH----HHHHHHHHHHHHHHHHHHHH
Confidence 455555555444 33444455566666666666666666666665554443221 33333333333333322 24
Q ss_pred hhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928 110 MTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 110 i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~ 143 (185)
++.+.|+|+|++.-++++-|+=++.+++.+==.+
T Consensus 141 mm~daIDdal~~~edEEEtd~lvnqVLDEiGvdl 174 (224)
T KOG3230|consen 141 MMDDAIDDALGDDEDEEETDDLVNQVLDEIGVDL 174 (224)
T ss_pred HHHHHHHHhhcccchhHHHHHHHHHHHHHHcccH
Confidence 4556666666655555555555666655543333
No 21
>KOG3229 consensus Vacuolar sorting protein VPS24 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.75 Score=37.30 Aligned_cols=54 Identities=20% Similarity=0.394 Sum_probs=39.4
Q ss_pred HHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhh-hcccCCCC
Q 029928 104 QSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVAS-QLSAAPKG 157 (185)
Q Consensus 104 e~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~-~l~~~P~~ 157 (185)
+|.+=-++..+|++++++.++..++.+|.++.++.-.+.+--.+.+ .++.+|..
T Consensus 129 elSkEmmKaGIIEEmvdet~esv~d~eemeEe~deEVdkIL~~it~~~~~~~p~a 183 (227)
T KOG3229|consen 129 ELSKEMMKAGIIEEMVDETMESVEDSEEMEEEADEEVDKILTEITGEKAGEAPLA 183 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHhccccccCCcc
Confidence 3334456778999999999999888888999999888888766643 34444433
No 22
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=95.28 E-value=1.4 Score=36.32 Aligned_cols=106 Identities=12% Similarity=0.188 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH--
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIAN-----------LQGSRAQIRGIATHTQAMHA-- 67 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~-----------l~~~~aql~sv~~~l~~~~s-- 67 (185)
++|+..++.....+++.+.+.|+.+|+.+-||-.+...-..-+.... ..+++.++..+..++....+
T Consensus 57 ~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 57 LERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999988776655544443332222 22444444445544443333
Q ss_pred -HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 029928 68 -HSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMD 109 (185)
Q Consensus 68 -~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~ 109 (185)
+.....+..+++.-|..+...++. ...|..|++--++..
T Consensus 137 ~~l~ar~~~akA~~~v~~~~~~~s~---~sa~~~fer~e~kie 176 (225)
T COG1842 137 EALKARKAAAKAQEKVNRSLGGGSS---SSAMAAFERMEEKIE 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc---hhhHHHHHHHHHHHH
Confidence 333344445555555555555555 555555555554443
No 23
>PF03398 Ist1: Regulator of Vps4 activity in the MVB pathway; InterPro: IPR005061 This is a eukaryotic protein family of unknown function.; PDB: 3GGZ_B 3GGY_B 3FRR_A 3FRS_A.
Probab=95.23 E-value=0.048 Score=42.68 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 029928 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK-AMAA 84 (185)
Q Consensus 6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~-~m~~ 84 (185)
+|-...-++.+++|-..++.|+.+.||+-+.++|+-.+...-|.-+-.-.+-+..++.........-..+..+.. ++-.
T Consensus 16 ~K~~~~~~~~rkdIa~LL~~g~~~~Ar~rvE~li~ed~~~e~~e~Le~yce~l~~r~~~i~~~k~~p~~l~eAi~siiyA 95 (165)
T PF03398_consen 16 NKRQAQAKQARKDIAQLLKNGKEESARIRVEQLIREDNMIEAYEILELYCELLLARFSLIEKSKECPPELKEAISSIIYA 95 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCT-TSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCHHHHHHHHHHHHH
Confidence 455566677889999999999999999999999999999888888888888888777666554433223333322 4444
Q ss_pred HHhcCCHHHHHHHHHH----HHHHHHHhhhh--HHHhhhhhcccccc-hhhHHHHHHHHHHHHHHhcch
Q 029928 85 MNKQMEPAKQAKVMRE----FQKQSAQMDMT--TEMMSDTIDDALDN-DEAEEETEELTNQVLDEIGVD 146 (185)
Q Consensus 85 ~n~~~~~~~l~~~M~~----f~ke~~~~~i~--~e~m~d~~~~~~~~-~~~eee~d~lv~qvl~E~~~~ 146 (185)
..+.-++|++..+=.. |-++|...-+- ...++.-+-.-+.. .-.++.++..+..|+.|+|++
T Consensus 96 a~r~~elpEL~~vr~~l~~kyG~~f~~~a~~~~~~~Vn~~iv~kLs~~~p~~~~v~~~L~eIA~e~~i~ 164 (165)
T PF03398_consen 96 APRCGELPELQEVRKQLAEKYGKEFVEAAMENRDNGVNPRIVEKLSVKPPSEELVEKYLKEIAKEYGIP 164 (165)
T ss_dssp HHHHTTTCCHHHHHHHHHCCC-HHHHHHHHTTTTTTS-HHHHHHCS-S---CCHHHHHHHHHHHHCT-S
T ss_pred hhhccCChhHHHHHHHHHHHhCHHHHHHHHHhcCCCcCHHHHHHcCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 4444577777554333 45555332111 11122211111111 112557888888888888874
No 24
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.18 E-value=1.4 Score=35.73 Aligned_cols=133 Identities=15% Similarity=0.146 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILAR----QLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMA 83 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak----~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~ 83 (185)
|.+.+.-++.+|-.-.+. .||.|+. -+++.=|...+|.+--+|++++.+.|..+.-+..-++.=..+-.+|+
T Consensus 33 L~KKqe~Le~ki~~e~e~----~A~k~~tkNKR~AlqaLkrKK~~E~qL~qidG~l~tie~Qr~alEnA~~n~Evl~~m~ 108 (221)
T KOG1656|consen 33 LEKKQEFLEKKIEQEVEN----NARKYGTKNKRMALQALKRKKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLDAMG 108 (221)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcccccHHHHHHHH
Confidence 445555556666555433 2555553 44555567788888999999999999988887777766677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhhhH---HHhhhhhcccccc--hhhHHHHHHHHHHHHHHhc
Q 029928 84 AMNKQMEPAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDALDN--DEAEEETEELTNQVLDEIG 144 (185)
Q Consensus 84 ~~n~~~~~~~l~~~M~~f~ke~~~~~i~~---e~m~d~~~~~~~~--~~~eee~d~lv~qvl~E~~ 144 (185)
..-+.|+--.-.--+++...-|++..-.. +-|++++..-++. +.+++|...+++.+.+|..
T Consensus 109 ~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a~~DEDEL~~ELdeLeqeel 174 (221)
T KOG1656|consen 109 SAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGADFDEDELMAELDELEQEEL 174 (221)
T ss_pred HHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCHHHHHHHHHHHHHHHH
Confidence 77777544444444566776676664444 4567778777763 3568888888888877653
No 25
>KOG2910 consensus Uncharacterized conserved protein predicted to be involved in protein sorting [General function prediction only]
Probab=94.49 E-value=2.1 Score=34.43 Aligned_cols=135 Identities=19% Similarity=0.158 Sum_probs=81.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH-HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIR-LRQQIANLQGS--------RAQIRGIATHTQAMHAHSSVA 72 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr-~rk~~~~l~~~--------~aql~sv~~~l~~~~s~~~~~ 72 (185)
||-|-.+..+..|+.+=.|+.-+ ..+.=|.+|++||| .||....|+-- -.|-+.--..|..+.+...++
T Consensus 15 DrAIL~lK~QRdkl~qyqkR~e~--~le~Er~~Ar~lird~rKdrAlllLKkKryQE~Ll~qt~~qL~nlEqmvsdiEft 92 (209)
T KOG2910|consen 15 DRAILSLKTQRDKLKQYQKRLEK--QLEAERQLARDLIRDGRKDRALLLLKKKRYQEELLTQTDNQLINLEQMVSDIEFT 92 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666555554433 34567899999999 46655444422 222333334467777788888
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH--HHHHHHHhhhhH---HHhhhhhcccccchhhHHHHHHHHHHHHH
Q 029928 73 VGMKGASKAMAAMNKQMEPAKQAKVMRE--FQKQSAQMDMTT---EMMSDTIDDALDNDEAEEETEELTNQVLD 141 (185)
Q Consensus 73 ~~m~~~~~~m~~~n~~~~~~~l~~~M~~--f~ke~~~~~i~~---e~m~d~~~~~~~~~~~eee~d~lv~qvl~ 141 (185)
..=+.+..+++.-|.. +.+++..|+- ..+-|+.-.--- .-+++++...+.. ++++++.++++-+..
T Consensus 93 ~vqk~V~~gLk~GN~~--lkkl~~~~~ideV~rimddt~ea~~YQ~Ein~~L~~~ls~-~dEddi~~EldaLes 163 (209)
T KOG2910|consen 93 QVQKKVMEGLKQGNEA--LKKLQQEFDIDEVDRIMDDTQEAIEYQDEINAILSGSLSA-EDEDDILAELDALES 163 (209)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHhhccc-ccHHHHHHHHHHHHH
Confidence 8888888899998887 6667665543 666655553222 2344455555553 345566655555443
No 26
>KOG3232 consensus Vacuolar assembly/sorting protein DID2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.28 E-value=2.2 Score=33.84 Aligned_cols=88 Identities=22% Similarity=0.311 Sum_probs=60.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL-RQQIANLQGS--------RAQIRGIATHTQAMHAHSSV 71 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~-rk~~~~l~~~--------~aql~sv~~~l~~~~s~~~~ 71 (185)
|+..+..|..-.+.|.+..++|=|--..+.+| .+-+|.+ ...+.|+|.. .-.+--+++|+....+-.+.
T Consensus 7 le~~lf~LkF~sk~L~r~a~kceKeEK~Ek~K--~kkAi~kgN~dvArIyAeNAIRkkne~~n~LrlssRvDAVaaRvqT 84 (203)
T KOG3232|consen 7 LENHLFDLKFTSKQLQRQAKKCEKEEKAEKAK--LKKAIQKGNMDVARIYAENAIRKKNEAVNYLRLSSRVDAVAARVQT 84 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777778887777776655445444 4556666 4455555532 22344567889999888888
Q ss_pred HHHHHHHHHHHHHHHhcCC
Q 029928 72 AVGMKGASKAMAAMNKQME 90 (185)
Q Consensus 72 ~~~m~~~~~~m~~~n~~~~ 90 (185)
.-.|.++++.|..+-+.|+
T Consensus 85 avtmr~Vt~sM~gVvK~md 103 (203)
T KOG3232|consen 85 AVTMRKVTKSMAGVVKSMD 103 (203)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8899999999999887754
No 27
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=1.4 Score=34.73 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHHHhhhhHHHhhh
Q 029928 43 QQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM-----REFQKQSAQMDMTTEMMSD 117 (185)
Q Consensus 43 k~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M-----~~f~ke~~~~~i~~e~m~d 117 (185)
||..+|-+-+++--+++++++++....++.+++-+.+.+|+..-+. ...+.+.| -+--++|...+++=+|-++
T Consensus 62 KQLV~lRkQKtrt~a~s~ki~s~~~QnK~M~s~~km~~AMgTTaKT--M~amNk~M~pek~~~tmr~FQ~anmKMemTeE 139 (208)
T KOG3231|consen 62 KQLVHLRKQKTRTFAVSSKITSMSTQNKVMNSQMKMAGAMGTTAKT--MQAMNKKMDPEKTLQTMRNFQKANMKMEMTEE 139 (208)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhchHHHH--HHHHHccCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4555555555555666666666666666666665555555544333 12222221 1223455555555566666
Q ss_pred hhccccc
Q 029928 118 TIDDALD 124 (185)
Q Consensus 118 ~~~~~~~ 124 (185)
++++.+|
T Consensus 140 MiNDTLD 146 (208)
T KOG3231|consen 140 MINDTLD 146 (208)
T ss_pred HHHhhHH
Confidence 5555544
No 28
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.68 E-value=24 Score=28.57 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=38.4
Q ss_pred HHHHcCChhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCC
Q 029928 21 RTAKTGNEGATKI-LARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA-HSSVAVGMKGASKAMAAMNKQME 90 (185)
Q Consensus 21 ~aakkg~~~~ari-~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s-~~~~~~~m~~~~~~m~~~n~~~~ 90 (185)
.-+++=...-++- +-+.++|.=|+...|...+-+|..-+..+..+.- ...+-+++.. ..+|+..|+.|.
T Consensus 47 ~Qi~k~R~gpaq~~~KqrAlrVLkQKK~yE~q~d~L~~QsfNMeQa~~t~e~LKdtq~T-v~AmK~~~k~mK 117 (218)
T KOG1655|consen 47 DQIKKTRPGPAQNALKQRALRVLKQKKMYENQKDSLDQQSFNMEQANFTAESLKDTQAT-VAAMKDTNKEMK 117 (218)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3444444455332 2334555667888887777777776666654443 3334444433 446777776643
No 29
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=77.82 E-value=51 Score=29.40 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Q 029928 9 QQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG-ASKAMAAMNK 87 (185)
Q Consensus 9 e~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~-~~~~m~~~n~ 87 (185)
+..-++++++|-..++.|....||+=+..+||--+.+.-|.-+--=.+-|..++.....+..+-..++. ++.+|=+.-+
T Consensus 14 ~a~~kq~RrdIA~lL~sg~~~~A~~RvE~li~ee~~~~a~e~le~fCelll~R~~~i~~~~~cp~~l~EAVsSlifAA~R 93 (388)
T KOG2027|consen 14 EALAKQLRRDIADLLKSGQDERARIRVEHLIREENLLEAYEILELFCELLLARLSLIEKQKECPDDLKEAVSSLIFAAPR 93 (388)
T ss_pred HHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcccCCHHHHHHHHHHHHHhcc
Confidence 445678889999999999999999999999999988888877777777788887777776555444433 3345566666
Q ss_pred cCCHHHHHHHHHHH----HHHHHHh--------hhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh
Q 029928 88 QMEPAKQAKVMREF----QKQSAQM--------DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV 147 (185)
Q Consensus 88 ~~~~~~l~~~M~~f----~ke~~~~--------~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~ 147 (185)
.-++++|+.+=+-| .++|... ++...+|... .... -+.+-+..++..|+.|+++..
T Consensus 94 ~~EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~~~Vn~kiiekL-s~~~---P~~e~k~k~lkEIA~ey~v~~ 161 (388)
T KOG2027|consen 94 LSEVPELREIRDLFVKKYGKEFVKAAIELRPGNGVNRKIIEKL-SVEA---PPKELKEKYLKEIAKEYNVNW 161 (388)
T ss_pred ccccHHHHHHHHHHHHHHhHHHHHHHHhccccCCcCHHHHHHh-cCCC---CcHHHHHHHHHHHHHHhCCCc
Confidence 66788887665544 4444433 2222233331 1111 123446888888999988754
No 30
>PF02583 Trns_repr_metal: Metal-sensitive transcriptional repressor; InterPro: IPR003735 This entry describes proteins of unknown function.; PDB: 2HH7_A 3AAI_A 4ADZ_B.
Probab=67.01 E-value=39 Score=23.27 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhc
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID 120 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~ 120 (185)
+++-..||.+...|+.+|..=+..-.....+...+.-+-.++..++.. ++++.+...|.
T Consensus 4 k~~ll~RL~rIeGQv~gI~~Miee~~~C~dIl~Qi~Av~~Al~~~~~~---------------------vl~~hl~~c~~ 62 (85)
T PF02583_consen 4 KKDLLNRLKRIEGQVRGIERMIEEDRDCEDILQQIAAVRSALDKVGKL---------------------VLEDHLEHCLV 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTE-HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Confidence 345567788888888888887777666677776666666666665543 34455555555
Q ss_pred ccccc-hhhHHHHHHHHH
Q 029928 121 DALDN-DEAEEETEELTN 137 (185)
Q Consensus 121 ~~~~~-~~~eee~d~lv~ 137 (185)
....+ .+.++.+++++.
T Consensus 63 ~~~~~~~~~~~~i~el~~ 80 (85)
T PF02583_consen 63 EAIQDEEDREEAIEELIK 80 (85)
T ss_dssp CHCCTCCCHHHHHHHHHH
T ss_pred hHhcCcccHHHHHHHHHH
Confidence 44433 334555555544
No 31
>COG1937 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.53 E-value=42 Score=23.57 Aligned_cols=46 Identities=15% Similarity=0.210 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMN 86 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n 86 (185)
+++..+|+-+...|+.+|..-|+.-.-...+...+.-+..++..++
T Consensus 8 kkkl~~RlrRi~GQv~gI~rMlEe~~~C~dVl~QIaAVr~Al~~~~ 53 (89)
T COG1937 8 KKKLLNRLRRIEGQVRGIERMLEEDRDCIDVLQQIAAVRGALNGLM 53 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888999988877776666666666666666665555
No 32
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=64.70 E-value=36 Score=22.13 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=41.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKT-GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQA 64 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakk-g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~ 64 (185)
++.|+.+|+++-.++...|...-++ +|.....-.-.++|. +...++..+..++..+..+|..
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve--~er~kl~~~~~~~~~l~~~l~~ 64 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVE--KEREKLEELEEELEKLEEALEQ 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999999999999876654 566555444555555 3445566666677666665543
No 33
>PRK15039 transcriptional repressor RcnR to maintain nickel and cobalt homeostasis; Provisional
Probab=55.05 E-value=71 Score=22.43 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 87 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~ 87 (185)
+++-..||.+...|+.+|..=+..-.....+...+..+-.++..+..
T Consensus 8 k~~ll~RL~RIeGQv~gI~~Miee~~~C~dIl~Ql~Avr~Al~~~~~ 54 (90)
T PRK15039 8 KQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAAIRGAVNGLMR 54 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888899999888777666666666666665555555543
No 34
>PRK11352 regulator protein FrmR; Provisional
Probab=52.96 E-value=78 Score=22.22 Aligned_cols=46 Identities=9% Similarity=0.142 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMN 86 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n 86 (185)
+++-..||.+...|+.+|..-|..-.....+...+..+..++..+.
T Consensus 8 k~~ll~RL~Ri~GQv~gi~~Mie~~~~C~dil~Ql~Avr~Al~~~~ 53 (91)
T PRK11352 8 KKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAAVRGAANGLM 53 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455678889999999999888877777777666666666665554
No 35
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=41.56 E-value=1.3e+02 Score=28.40 Aligned_cols=96 Identities=15% Similarity=0.223 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHHHHH-hhhhHHHhhh
Q 029928 51 SRAQIRGIATHTQAMHAHSS-----VAVGMKGASKAMAAMNKQMEPAKQAKVMRE-------FQKQSAQ-MDMTTEMMSD 117 (185)
Q Consensus 51 ~~aql~sv~~~l~~~~s~~~-----~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~-------f~ke~~~-~~i~~e~m~d 117 (185)
+.+||+.|+.+-+--..+++ ..++|..++.+...++.- +.|++.+.+. +..|+.+ .|-++..+.|
T Consensus 232 vQ~RlN~val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~A--l~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~d 309 (610)
T PF01601_consen 232 VQARLNYVALQTDVLQENQKIIANSFNKAIGNIQLGFTTTASA--LNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQD 309 (610)
T ss_dssp --------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHhcceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 34556665555432222222 244445555555555544 4455444333 3344333 3667777777
Q ss_pred hhcccccchhhHHHHHHHHHHHHHHhcchhhh
Q 029928 118 TIDDALDNDEAEEETEELTNQVLDEIGVDVAS 149 (185)
Q Consensus 118 ~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~ 149 (185)
.... +|.-+.+..+|.||.==|.-+..=+.+
T Consensus 310 Iy~R-Ld~leAdaQVDRLItGRL~aLnafVtq 340 (610)
T PF01601_consen 310 IYNR-LDQLEADAQVDRLITGRLAALNAFVTQ 340 (610)
T ss_dssp HHHH-HHHHHHH--------------------
T ss_pred HHHH-HHHHhhcccccccccchHHHHHHHHHH
Confidence 6544 444455667777766545444443333
No 36
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=41.41 E-value=72 Score=22.76 Aligned_cols=33 Identities=18% Similarity=0.256 Sum_probs=27.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Q 029928 16 VAEIKRTAKTGNEGATKILARQLIRLRQQIANL 48 (185)
Q Consensus 16 ~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l 48 (185)
...+..++..|+.+.||..++.+-..|+..=+.
T Consensus 69 id~a~~~~~~G~l~~AK~~l~~l~~lR~eyHkk 101 (103)
T PF07361_consen 69 IDKAEALAEAGKLDEAKAALKKLDDLRKEYHKK 101 (103)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhHh
Confidence 456778999999999999999999999876543
No 37
>PRK09720 cybC cytochrome b562; Provisional
Probab=40.34 E-value=74 Score=22.89 Aligned_cols=29 Identities=21% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHHHHHHHH
Q 029928 19 IKRTAKTGNEGATKILARQLIRLRQQIAN 47 (185)
Q Consensus 19 ik~aakkg~~~~ari~Ak~lvr~rk~~~~ 47 (185)
....+..|+.+.||..|+++..+|++.=+
T Consensus 69 A~~La~~GkL~eAK~~a~~l~~~Rn~yHk 97 (100)
T PRK09720 69 ALKLANEGKVKEAQAAAEQLKTTRNSYHK 97 (100)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999999999999999987644
No 38
>COG3783 CybC Soluble cytochrome b562 [Energy production and conversion]
Probab=38.63 E-value=64 Score=23.11 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=26.0
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 029928 17 AEIKRTAKTGNEGATKILARQLIRLRQQIA 46 (185)
Q Consensus 17 ~~ik~aakkg~~~~ari~Ak~lvr~rk~~~ 46 (185)
.++.+.+..|+.+.|+.-|+.+.-+|+..-
T Consensus 67 D~a~klaqeGnl~eAKaaak~l~d~Rn~YH 96 (100)
T COG3783 67 DKADKLAQEGNLDEAKAAAKTLKDTRNTYH 96 (100)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 456788899999999999999999998653
No 39
>PF13655 RVT_N: N-terminal domain of reverse transcriptase
Probab=35.26 E-value=1.5e+02 Score=20.45 Aligned_cols=36 Identities=17% Similarity=0.282 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Q 029928 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRL 41 (185)
Q Consensus 6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~ 41 (185)
.++++.-.++...|-+|.+.||...++-|-+-+++.
T Consensus 7 ~k~~~~V~rLQ~RI~kA~~~g~~~~v~~LQklL~~S 42 (84)
T PF13655_consen 7 KKVERKVFRLQKRIYKASQEGDWKKVRKLQKLLLRS 42 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 467788889999999999999999999988888874
No 40
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=32.93 E-value=2.8e+02 Score=22.92 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIA 46 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~ 46 (185)
.+||+||+| +..+||.-+..+++... ..|+..|+.+.
T Consensus 48 KkEIKKLQR----~RdQIK~W~~~~diKdk----~~L~e~Rk~IE 84 (233)
T PF04065_consen 48 KKEIKKLQR----LRDQIKTWLSSNDIKDK----KKLLENRKLIE 84 (233)
T ss_pred HHHHHHHHH----HHHHHHHHccCcccccH----HHHHHHHHHHH
Confidence 456666653 45666666666666542 23666666544
No 41
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=31.78 E-value=1.9e+02 Score=21.06 Aligned_cols=18 Identities=22% Similarity=0.410 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHhcc
Q 029928 128 AEEETEELTNQVLDEIGV 145 (185)
Q Consensus 128 ~eee~d~lv~qvl~E~~~ 145 (185)
.+.-+++-|.+++..+|+
T Consensus 75 le~~~~~~v~~~L~~lg~ 92 (118)
T TIGR01837 75 LEKAFDERVEQALNRLNI 92 (118)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 455666667777776664
No 42
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.91 E-value=4.5e+02 Score=23.94 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 5 IGALQQEEKKLVAEIKRTAKTGN---EGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKA 81 (185)
Q Consensus 5 ~~kle~ee~k~~~~ik~aakkg~---~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~ 81 (185)
..+|.++-..+.++|++.-++=+ .++-|..|....|.|+-..+- ..++.+...+|.+.-++..-+..=+-+-.+
T Consensus 242 ~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~---~er~~~~l~~l~~vl~~Id~s~~nkvvl~A 318 (439)
T KOG2911|consen 242 RAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKD---LERKVSSLNNLETVLSQIDNSQTNKVVLQA 318 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 45677777777777776554433 245677788888877755443 344455555555555554444444555556
Q ss_pred HHHHHhc
Q 029928 82 MAAMNKQ 88 (185)
Q Consensus 82 m~~~n~~ 88 (185)
++.-+..
T Consensus 319 yksGs~a 325 (439)
T KOG2911|consen 319 YKSGSEA 325 (439)
T ss_pred HHHhHHH
Confidence 6665544
No 43
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=28.79 E-value=1.2e+02 Score=21.54 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhh----HHHhhhhhcccccchhhHHHHHHHHHHHHH
Q 029928 74 GMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMT----TEMMSDTIDDALDNDEAEEETEELTNQVLD 141 (185)
Q Consensus 74 ~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~----~e~m~d~~~~~~~~~~~eee~d~lv~qvl~ 141 (185)
.+..++..|..+. .++...+..++.+|.......+.. .+++.+.+..+++ ++.+..+++++..
T Consensus 34 ei~~i~~~ma~l~-~v~~~~~~~Vl~EF~~~~~~~~~~~~gg~~~~~~lL~~alg----~~~a~~il~~~~~ 100 (108)
T PF14842_consen 34 EIERISREMAKLG-SVSPEEVEEVLEEFYDEIRAQGGIVSGGRDFARRLLEKALG----EEKAKEILDRLEQ 100 (108)
T ss_dssp HHHHHHHHHHT------HHHHHHHHHHHHHHHHHTT---S-HHHHHHH-HHHHS-------HHHHH------
T ss_pred HHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHHccccccChHHHHHHHHHHHCC----HHHHHHHHHHHhc
Confidence 3566666666663 578889999999999865544322 2445555555554 3456666666553
No 44
>PRK14127 cell division protein GpsB; Provisional
Probab=28.67 E-value=1.8e+02 Score=21.16 Aligned_cols=12 Identities=33% Similarity=0.354 Sum_probs=8.2
Q ss_pred cHHHHHHHHHhh
Q 029928 171 GIDELEKRLAAL 182 (185)
Q Consensus 171 ~~d~l~~RL~~L 182 (185)
.-=|+-+||.+|
T Consensus 86 tn~DiLKRls~L 97 (109)
T PRK14127 86 TNYDILKRLSNL 97 (109)
T ss_pred chHHHHHHHHHH
Confidence 345677788877
No 45
>PF09424 YqeY: Yqey-like protein; InterPro: IPR019004 Putative protein of unknown function; the authentic protein is detected in highly purified mitochondria in high-throughput studies; YOR215C is not an essential gene. ; PDB: 1NG6_A.
Probab=26.54 E-value=2.9e+02 Score=20.91 Aligned_cols=37 Identities=27% Similarity=0.584 Sum_probs=22.8
Q ss_pred HHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcch
Q 029928 102 QKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVD 146 (185)
Q Consensus 102 ~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~ 146 (185)
+++...+.++++++=-. + .++|+..+|..++.++|..
T Consensus 74 e~e~~Ei~iL~~yLP~~----l----seeEi~~~v~~~i~e~ga~ 110 (143)
T PF09424_consen 74 EKEQAEIEILEEYLPKQ----L----SEEEIEAIVEEAIAELGAS 110 (143)
T ss_dssp HHHHHHHHHHGGGS-------------HHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHhCcCC----C----CHHHHHHHHHHHHHHhCCC
Confidence 34555556666655432 2 3689999999999999864
No 46
>PLN03086 PRLI-interacting factor K; Provisional
Probab=26.31 E-value=4.8e+02 Score=24.59 Aligned_cols=63 Identities=13% Similarity=0.164 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 3 KEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSV 71 (185)
Q Consensus 3 Re~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~ 71 (185)
|-..|+++|.++=+.+.|.-+.+- |-.-.++.+.|-.+....+ .-+|++++.++.....+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 69 (567)
T PLN03086 7 RAREKLEREQRERKQRAKLKLERE-----RKAKEEAAKQREAIEAAQR-SRRLDAIEAQIKADQQMQES 69 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 445666766666555555443322 2222344444555555544 34888888887755554443
No 47
>smart00685 DM14 Repeats in fly CG4713, worm Y37H9A.3 and human FLJ20241.
Probab=24.72 E-value=2e+02 Score=18.56 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 029928 7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQL 38 (185)
Q Consensus 7 kle~ee~k~~~~ik~aakkg~~~~ari~Ak~l 38 (185)
-|+...++++.-...|-..||.+.||.|-+-+
T Consensus 3 ~L~~R~~~yk~Aa~~AK~~gd~~kAr~~~R~~ 34 (59)
T smart00685 3 LLQQRQEQYKQAALQAKRAGDEEKARRHLRIA 34 (59)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 36667777888888888899999987776544
No 48
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=24.40 E-value=3.8e+02 Score=21.98 Aligned_cols=25 Identities=32% Similarity=0.525 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhh
Q 029928 94 QAKVMREFQKQSAQMDMTTEMMSDT 118 (185)
Q Consensus 94 l~~~M~~f~ke~~~~~i~~e~m~d~ 118 (185)
+.+.+.+|+|+.=.++--.++|..+
T Consensus 42 ~~~~l~~~~~~~f~~~~dDe~i~~~ 66 (215)
T cd07631 42 TSKLLKEYEKQRFPLGGDDEVMSST 66 (215)
T ss_pred HHHHHHHHHHhcCCcCCCcHHHHHH
Confidence 3444444444433333333333333
No 49
>PRK15058 cytochrome b562; Provisional
Probab=23.86 E-value=1.9e+02 Score=21.73 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=25.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Q 029928 17 AEIKRTAKTGNEGATKILARQLIRLRQQIAN 47 (185)
Q Consensus 17 ~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~ 47 (185)
.++...+..|+.+.||.-++++..+|++.=+
T Consensus 95 D~a~~la~~GkL~eAK~~a~~l~~lR~eYHk 125 (128)
T PRK15058 95 DGALKLANEGKVKEAQAAAEQLKTTRNAYHK 125 (128)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999987544
No 50
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=23.75 E-value=4.9e+02 Score=22.66 Aligned_cols=79 Identities=13% Similarity=0.237 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHH
Q 029928 58 IATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTN 137 (185)
Q Consensus 58 v~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~ 137 (185)
+...|...++ .++.++.+++.-=+.+| .++...|++|.+-...+.-+.+-...+-.++..-...-+++-..++
T Consensus 246 ~~~~Ldklh~--eit~~LEkI~SREK~lN-----nqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E 318 (384)
T KOG0972|consen 246 VGPYLDKLHK--EITKALEKIASREKSLN-----NQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIE 318 (384)
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3444444444 56777777777777777 4678889999998888877776666554433222222334444444
Q ss_pred HHHHHh
Q 029928 138 QVLDEI 143 (185)
Q Consensus 138 qvl~E~ 143 (185)
++-.|+
T Consensus 319 ~~Kqem 324 (384)
T KOG0972|consen 319 QLKQEM 324 (384)
T ss_pred HHHHHH
Confidence 444443
No 51
>PLN02943 aminoacyl-tRNA ligase
Probab=23.52 E-value=2.3e+02 Score=28.27 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=37.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKT-GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAM 65 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakk-g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~ 65 (185)
+.|+.+|+++-++++.+|.+.-++ +|.+-..-.-.++|. +...++..+..++..+.-.|..-
T Consensus 888 ~~E~~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~--~e~~kl~~~~~~l~~~~~~l~~l 950 (958)
T PLN02943 888 SAEVERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVR--GVREKAAEAEEKIKLTKNRLAFL 950 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999877765 555543222334443 23334445555565555554443
No 52
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=23.36 E-value=1.4e+02 Score=19.32 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhhhccc
Q 029928 92 AKQAKVMREFQKQSAQMDMTTEMMSDTIDDA 122 (185)
Q Consensus 92 ~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~ 122 (185)
.++...|.++...++.+..+.+-+.+ |+.+
T Consensus 8 ~eL~D~~~~L~~n~~~L~~ihesL~~-FNES 37 (58)
T PF08653_consen 8 AELSDSMETLDKNMEQLNQIHESLSD-FNES 37 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 45566677777777777766666666 4433
No 53
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=23.20 E-value=4.1e+02 Score=21.56 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 029928 71 VAVGMKGASKAMAAMN 86 (185)
Q Consensus 71 ~~~~m~~~~~~m~~~n 86 (185)
-+..|+..++.|..+|
T Consensus 135 Y~eqm~~aa~~l~~LN 150 (202)
T TIGR03513 135 YIEQMSSLAANMEGLN 150 (202)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 54
>PRK08869 flagellin; Reviewed
Probab=23.05 E-value=5.1e+02 Score=22.78 Aligned_cols=84 Identities=20% Similarity=0.257 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhc
Q 029928 72 AVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQL 151 (185)
Q Consensus 72 ~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l 151 (185)
..++..+-.++..++.. ...|..++..|+.....+....+-+..+-....|.+...|-++---.+|+...|+-+..+-
T Consensus 287 ~~ai~~id~Ai~~v~~~--ra~lGA~qNRLe~~~~nl~~~~~Nl~aa~S~I~DaD~A~E~~~ltk~qil~Qag~a~LaQA 364 (376)
T PRK08869 287 QQAVAVIDAALKYVDSH--RADLGAFQNRFTHAINNLQNISENLSASNSRIKDTDFAKETTELTKAQILQQAGTSILAQA 364 (376)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777788888776 7788899999999999998888888887777666666666677777889999998887766
Q ss_pred ccCCCC
Q 029928 152 SAAPKG 157 (185)
Q Consensus 152 ~~~P~~ 157 (185)
...|..
T Consensus 365 Nq~pq~ 370 (376)
T PRK08869 365 KQAPQS 370 (376)
T ss_pred hhCHHH
Confidence 666643
No 55
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.88 E-value=2e+02 Score=22.59 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKIL 34 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~ 34 (185)
+...--+-..+||.+++.||.++..++
T Consensus 88 ~ln~I~rkl~~ik~aa~~~d~~Al~iL 114 (165)
T PF11286_consen 88 LLNKIYRKLHKIKAAAEQGDPDALKIL 114 (165)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333334445788999999999876665
No 56
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=22.87 E-value=4.3e+02 Score=21.66 Aligned_cols=62 Identities=13% Similarity=0.145 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Q 029928 44 QIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMD 109 (185)
Q Consensus 44 ~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~ 109 (185)
-..++..++++.+.+..+-.++.++..|...+.+++. ....-.+..+..-+.+++...+-++
T Consensus 125 Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~----~sa~~~fer~e~kiee~ea~a~~~~ 186 (225)
T COG1842 125 LEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS----SSAMAAFERMEEKIEEREARAEAAA 186 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445557777777777777777776666666555543 1111114455555555555554444
No 57
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.53 E-value=3.4e+02 Score=20.33 Aligned_cols=59 Identities=7% Similarity=0.229 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 029928 27 NEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPA 92 (185)
Q Consensus 27 ~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~ 92 (185)
+...++++..- ....+...+|..--.+++.+..+|...++ .+..+.+.|..+|..++..
T Consensus 62 d~~~~~l~~~~-~erqk~~~k~ae~L~kv~els~~L~~~~~------lL~~~v~~ie~LN~~LP~~ 120 (131)
T PF10158_consen 62 DQEIAKLLQQM-VERQKRFAKFAEQLEKVNELSQQLSRCQS------LLNQTVPSIETLNEILPEE 120 (131)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhCChh
Confidence 45566666543 33344455555555666666666665544 6788888888888876543
No 58
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=22.42 E-value=4.9e+02 Score=22.19 Aligned_cols=34 Identities=26% Similarity=0.317 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAKTGNEGATKILAR 36 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak 36 (185)
..+|.-|...+++++.+...|+.+-++ ..+.||+
T Consensus 107 ~d~i~nLk~se~~lkqQ~~~a~RrE~i-lv~rlA~ 140 (330)
T KOG2991|consen 107 SDDITNLKESEEKLKQQQQEAARRENI-LVMRLAT 140 (330)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 456788888999999998888877655 3444443
No 59
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=21.90 E-value=2.4e+02 Score=18.44 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 029928 6 GALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 49 (185)
Q Consensus 6 ~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~ 49 (185)
.++......+..+|..+...+|.+. |..+++.-++..++.
T Consensus 34 ~~~~~~~~~~~~~l~~~f~~~d~~~----A~~~~~kLky~~kl~ 73 (78)
T PF07743_consen 34 KEIEERIKELIKELAEAFDAKDWEE----AKEALRKLKYLQKLL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHH----HHHHHHHHHHHHHHH
Confidence 4556666777888888888888887 444555445555543
No 60
>COG1344 FlgL Flagellin and related hook-associated proteins [Cell motility and secretion]
Probab=21.82 E-value=5.3e+02 Score=22.33 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhc
Q 029928 72 AVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQL 151 (185)
Q Consensus 72 ~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l 151 (185)
..++..+..++..+... --+|......|+.....++-..+-+........|.+..++-.+---.+++.+.++.+..+.
T Consensus 271 ~~~l~~id~Al~~i~~~--ra~lGa~qnrl~~~~~~l~~~~~nl~~~~s~i~D~D~aee~t~l~~~q~~~Qas~~~laqa 348 (360)
T COG1344 271 QAALGTIDSALDNITSA--RAELGAVQNRLESAINNLSNQSDNLTAAESRIVDVDMAEESTELTKLQILQQASLQALAQA 348 (360)
T ss_pred hhHHHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666665 5677777777777777777777777777666555554555566667778888887776666
Q ss_pred ccCC
Q 029928 152 SAAP 155 (185)
Q Consensus 152 ~~~P 155 (185)
..+|
T Consensus 349 n~~s 352 (360)
T COG1344 349 NQLS 352 (360)
T ss_pred hhhh
Confidence 5544
No 61
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=21.52 E-value=1.9e+02 Score=17.29 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHH-HHHHHHHHHHHHHh
Q 029928 91 PAKQ-AKVMREFQKQSAQM 108 (185)
Q Consensus 91 ~~~l-~~~M~~f~ke~~~~ 108 (185)
++.+ +.++.++.+|+.++
T Consensus 5 le~~KqEIL~EvrkEl~K~ 23 (40)
T PF08776_consen 5 LERLKQEILEEVRKELQKV 23 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444 66777788887776
No 62
>TIGR00207 fliG flagellar motor switch protein FliG. The fliG protein along with fliM and fliN interact to form the switch complex of the bacterial flagellar motor located at the base of the basal body. This complex interacts with chemotaxis proteins (eg CHEY). In addition the complex interacts with other components of the motor that determine the direction of flagellar rotation. The model contains putative members of the fliG family at scores of less than 100 from Agrobacterium radiobacter and Sinorhizobium meliloti as well as fliG-like genes from treponema pallidum and Borrelia burgdorferi. That is why the suggested cutoff is set at 20 but was set at 100 to construct the family.
Probab=20.98 E-value=4e+02 Score=23.07 Aligned_cols=76 Identities=17% Similarity=0.304 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhh-h---HHHhhhhhcccccchhhHHHHHHHHHHHHHHhcch-hh
Q 029928 74 GMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDM-T---TEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVD-VA 148 (185)
Q Consensus 74 ~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i-~---~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~-~~ 148 (185)
.+...+..|..+. .++...+..++.+|...+...+. . .++....+..+++ ++.++.+++.+....... ..
T Consensus 38 ei~~l~~~m~~l~-~v~~~~~~~vl~eF~~~~~~~~~~~~g~~~~~~~~L~~alg----~~~a~~il~~i~~~~~~~~~~ 112 (338)
T TIGR00207 38 EIETLSAEIANVT-QIDNQQKDDVLEEFEQIAEAQAYINIGGLDYAREVLEKALG----EEKAASILNDLTSSLQTAPGF 112 (338)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHhcCCccCChHHHHHHHHHHhcC----HHHHHHHHHHHhcccccCchh
Confidence 3555566666554 57899999999999999977643 2 3556666666665 456777777665543222 34
Q ss_pred hhcccC
Q 029928 149 SQLSAA 154 (185)
Q Consensus 149 ~~l~~~ 154 (185)
..|...
T Consensus 113 ~~L~~~ 118 (338)
T TIGR00207 113 EFLRKA 118 (338)
T ss_pred HHHHCC
Confidence 444443
No 63
>PRK10698 phage shock protein PspA; Provisional
Probab=20.78 E-value=4.6e+02 Score=21.25 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 42 RQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG 77 (185)
Q Consensus 42 rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~ 77 (185)
++-..+|..++++-+.+..+.+++.+..++...+.+
T Consensus 123 ~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~ 158 (222)
T PRK10698 123 GELENKLSETRARQQALMLRHQAASSSRDVRRQLDS 158 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444556667777777888888888887777776654
No 64
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. The ATPase F1 complex gamma subunit forms the central shaft that connects the F0 rotary motor to the F1 catalytic core. The gamma subunit functions as a rotary motor inside the cylinder formed by the alpha(3)beta(3) subunits in the F1 complex []. The best-conserved region of the gamma subunit is its C terminus, which seems to be essential for assembly and catalysis. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport, 0045261 proton-transporting ATP synthase complex, catalytic core F(1); PDB: 3OFN_G 3FKS_P 3OEE_Y 2HLD_Y 3OEH_Y 2XOK_G 3ZRY_G 3OE7_P 2WPD_G 3OAA_e ....
Probab=20.76 E-value=1.9e+02 Score=24.26 Aligned_cols=25 Identities=12% Similarity=0.254 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 54 QIRGIATHTQAMHAHSSVAVGMKGA 78 (185)
Q Consensus 54 ql~sv~~~l~~~~s~~~~~~~m~~~ 78 (185)
.|..+..|+.+..+..+++++|+-+
T Consensus 2 ~lk~ik~RI~sv~~i~kIt~aMkmv 26 (290)
T PF00231_consen 2 SLKEIKRRIKSVKSIQKITKAMKMV 26 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666544
No 65
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=20.42 E-value=4.7e+02 Score=21.22 Aligned_cols=76 Identities=16% Similarity=0.208 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHh
Q 029928 31 TKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK-QMEPAKQAKVMREFQKQSAQM 108 (185)
Q Consensus 31 ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~-~~~~~~l~~~M~~f~ke~~~~ 108 (185)
-+-.++.+-..-.+..+..+..-+|..+..+|.......++ .++.+++-++.++. .-|..++..-|+.+.+.+..+
T Consensus 115 ~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~--QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sL 191 (202)
T TIGR03513 115 FEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEA--QLKGASSHADANNEIAINSSSLKEEMEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444344444444445555555555444443333 34444444444433 234566666677777766666
No 66
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=20.23 E-value=8.1e+02 Score=23.86 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 029928 3 KEIGALQQEEKKLVAEIKR 21 (185)
Q Consensus 3 Re~~kle~ee~k~~~~ik~ 21 (185)
|++.++..+...++.+++.
T Consensus 70 ~ev~~l~~ea~~L~~~~~~ 88 (766)
T PF10191_consen 70 REVDRLRQEAASLQEQMAS 88 (766)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5667777777777666553
No 67
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=20.21 E-value=2.3e+02 Score=21.51 Aligned_cols=57 Identities=9% Similarity=0.131 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHHHH---HhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhh
Q 029928 88 QMEPAKQAKVMREFQKQSA---QMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVA 148 (185)
Q Consensus 88 ~~~~~~l~~~M~~f~ke~~---~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~ 148 (185)
.++..+.+..+.+++..+. .....++......+.+++. .-.+.++++-++++|+.|+
T Consensus 48 ~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~~~qvW~~----~V~~~ll~~e~eklGi~Vs 107 (145)
T PF13623_consen 48 KISYQEFQQRVEQATENYKQQNGRSPTEQEQNQIRNQVWNQ----MVQNILLEQEFEKLGITVS 107 (145)
T ss_pred EcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH----HHHHHHHHHHHHHhCCccC
Confidence 4667777777777663332 2233334444444444432 2345588889999999776
Done!