Query 029928
Match_columns 185
No_of_seqs 109 out of 730
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 09:03:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3frt_A Charged multivesicular 100.0 3.1E-49 1.1E-53 319.5 8.6 181 1-184 26-218 (218)
2 2gd5_A Charged multivesicular 100.0 8.9E-41 3.1E-45 263.7 3.0 154 1-157 26-179 (179)
3 3eab_G CHMP1B; spastin, MIT, E 99.0 8.4E-12 2.9E-16 78.1 -2.2 49 132-184 2-50 (50)
4 3um3_B Charged multivesicular 98.3 5.4E-06 1.8E-10 59.2 8.7 75 88-162 2-82 (104)
5 3frt_A Charged multivesicular 98.1 7E-07 2.4E-11 71.8 2.4 99 43-143 61-164 (218)
6 2gd5_A Charged multivesicular 96.8 0.00027 9.2E-09 54.8 1.0 136 2-143 20-164 (179)
7 2v6x_B DOA4-independent degrad 96.4 0.00067 2.3E-08 42.6 0.4 14 171-184 39-52 (54)
8 3frr_A Uncharacterized protein 94.9 0.51 1.7E-05 36.8 11.8 137 7-147 30-179 (191)
9 3ggy_A Increased sodium tolera 94.8 0.71 2.4E-05 36.0 12.4 138 7-148 29-185 (193)
10 3ggz_E Vacuolar protein-sortin 93.8 0.044 1.5E-06 29.6 2.3 18 167-184 12-29 (29)
11 2xze_Q Charged multivesicular 93.1 0.011 3.9E-07 34.5 -0.7 14 171-184 27-40 (40)
12 2luh_B Vacuolar protein-sortin 80.9 1.2 4.3E-05 28.0 2.8 54 89-142 1-54 (59)
13 3twe_A Alpha4H; unknown functi 77.4 1.2 3.9E-05 22.9 1.5 14 171-184 9-22 (27)
14 4abm_A Charged multivesicular 75.7 14 0.0005 24.3 8.3 33 32-64 44-77 (79)
15 2hh7_A Hypothetical protein CS 70.2 27 0.00091 24.9 8.6 47 41-87 9-55 (119)
16 1yzm_A FYVE-finger-containing 63.0 23 0.00077 21.5 6.4 42 8-49 7-48 (51)
17 1z0k_B FYVE-finger-containing 61.7 24 0.00084 22.7 5.6 42 8-49 25-66 (69)
18 4adz_A CSOR; transcription, co 53.4 62 0.0021 23.5 7.6 49 39-87 49-97 (136)
19 3aai_A Copper homeostasis oper 53.2 50 0.0017 22.3 7.2 47 41-87 13-60 (94)
20 1gp8_A Protein (scaffolding pr 50.6 24 0.00082 20.1 3.6 26 13-38 11-36 (40)
21 2r6a_C DNAG primase, helicase 38.9 72 0.0025 21.9 5.7 37 8-44 103-139 (143)
22 1wrd_A TOM1, target of MYB pro 36.9 65 0.0022 22.0 5.0 66 74-144 17-90 (103)
23 3v1a_A Computational design, M 32.7 80 0.0027 18.8 6.1 40 8-47 6-45 (48)
24 3hjl_A Flagellar motor switch 29.5 47 0.0016 27.6 3.8 76 75-155 39-117 (329)
25 2lxm_B Charged multivesicular 27.8 42 0.0014 20.7 2.4 32 108-139 4-36 (57)
26 1z0j_B FYVE-finger-containing 27.2 1.2E+02 0.0039 18.9 6.5 40 9-48 15-54 (59)
27 2j5y_A GA module, peptostrepto 21.9 87 0.003 19.5 3.0 44 96-143 17-60 (61)
28 3um3_B Charged multivesicular 21.5 2E+02 0.0069 19.7 6.5 38 106-143 16-55 (104)
29 3s4r_A Vimentin; alpha-helix, 21.1 1.9E+02 0.0065 19.2 7.0 52 5-56 25-76 (93)
30 2wh0_Q Pkcev3, protein kinase 20.0 96 0.0033 16.1 2.5 17 8-24 11-27 (31)
No 1
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-49 Score=319.48 Aligned_cols=181 Identities=27% Similarity=0.434 Sum_probs=122.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|||++++|+++|++++.+||+++|+||+++|||||+++||+|+++.+||.+++||++|+++|++++++.+|+++|+++++
T Consensus 26 LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~ 105 (218)
T 3frt_A 26 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTE 105 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC---
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG--- 157 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~--- 157 (185)
+|+.+|++||+|+|+.+|++|++||+++||+++||+|+|+++++++++++|+|++|+|||+|+|. ++|+.+|++
T Consensus 106 ~M~~~n~~m~l~~i~~tM~efekE~~k~~i~eEmm~Da~d~~~~~~~~eee~d~~v~kVldEi~~---~~l~~~p~~~~~ 182 (218)
T 3frt_A 106 VMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSKVTD 182 (218)
T ss_dssp HHHHHHHSTTSHHHHHHHHHHHHHHHHHSCC----------------CTTSTTTHHHHHHHTC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHhH---hHhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999888888899999999999999995 455555543
Q ss_pred CCCCCCc------c---cCCCccHHHHHHHHHhhcC
Q 029928 158 KIASKNT------E---DASSSGIDELEKRLAALRN 184 (185)
Q Consensus 158 ~~~~~~~------~---~~~~~~~d~l~~RL~~Lr~ 184 (185)
.+|.+.. + +..++++++|+.||++||+
T Consensus 183 ~~~~~~~~~~~~~~~~~e~~~~~~~~m~~rl~al~s 218 (218)
T 3frt_A 183 ALPEPEPPGAMAASEDEEEEEEALEAMQSRLATLRS 218 (218)
T ss_dssp ------------------------------------
T ss_pred CCCCccccccccccccchhhHHHHHHHHHHHHHhcC
Confidence 2332111 0 1112346889999999996
No 2
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=100.00 E-value=8.9e-41 Score=263.68 Aligned_cols=154 Identities=28% Similarity=0.426 Sum_probs=123.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|||++++|++++++++.+||+++++||.++|||||+++||+|+++.+|+.++++|++|+++|+++.++.+++++|+++++
T Consensus 26 Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~v~~am~~~~~ 105 (179)
T 2gd5_A 26 VDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTE 105 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhcccCCCC
Q 029928 81 AMAAMNKQMEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQLSAAPKG 157 (185)
Q Consensus 81 ~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l~~~P~~ 157 (185)
+|+.+|+.||+|+|+++|++|+++++++|+++++|+|+|+++++++++++++|++|++|++|+|+ ++||.+|++
T Consensus 106 ~M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kVl~E~~~---~~l~~~P~~ 179 (179)
T 2gd5_A 106 VMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRILFEITA---GALGKAPSK 179 (179)
T ss_dssp HHHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHTTCCC--------------
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHhhH---hhcccCCCC
Confidence 99999999999999999999999999999999999999999888888899999999999999995 478888763
No 3
>3eab_G CHMP1B; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.03 E-value=8.4e-12 Score=78.07 Aligned_cols=49 Identities=33% Similarity=0.561 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcchhhhhcccCCCCCCCCCCcccCCCccHHHHHHHHHhhcC
Q 029928 132 TEELTNQVLDEIGVDVASQLSAAPKGKIASKNTEDASSSGIDELEKRLAALRN 184 (185)
Q Consensus 132 ~d~lv~qvl~E~~~~~~~~l~~~P~~~~~~~~~~~~~~~~~d~l~~RL~~Lr~ 184 (185)
||+||+||+||+|++++.+|+.+|.+.++.+ ....++|+|.+||++||+
T Consensus 2 Vd~Lm~qVaDE~Glel~~~L~~~~~~~~~~~----~~~~~eD~L~~RLaaLR~ 50 (50)
T 3eab_G 2 VDMLLQEMADEAGLDLNMELPQGQTGSVGTS----VASAEQDELSQRLARLRD 50 (50)
T ss_dssp CCHHHHHHHHHTTCC---------CHHHHHH----HHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhCchHHhhcccccccccCCC----CCcccHHHHHHHHHHHhC
Confidence 6899999999999999999999887654321 123568999999999995
No 4
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=98.26 E-value=5.4e-06 Score=59.18 Aligned_cols=75 Identities=24% Similarity=0.374 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhc--ccccchhhHHHHHHHHHHHHHHhcchhh----hhcccCCCCCCCC
Q 029928 88 QMEPAKQAKVMREFQKQSAQMDMTTEMMSDTID--DALDNDEAEEETEELTNQVLDEIGVDVA----SQLSAAPKGKIAS 161 (185)
Q Consensus 88 ~~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~--~~~~~~~~eee~d~lv~qvl~E~~~~~~----~~l~~~P~~~~~~ 161 (185)
.|++.+|..+|+++..+++..+-++++++..++ +.+|+++.++|.+.|....+++--++++ ..||++|++.+|.
T Consensus 2 ~m~idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~l~~~~l~~~~~~~~~LP~vP~~~lp~ 81 (104)
T 3um3_B 2 NMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEELDKNLLEISGPETVPLPNVPSIALPS 81 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCcCCC
Confidence 589999999999999999999999999999874 3456666677777777777766444333 3589999888764
Q ss_pred C
Q 029928 162 K 162 (185)
Q Consensus 162 ~ 162 (185)
.
T Consensus 82 ~ 82 (104)
T 3um3_B 82 K 82 (104)
T ss_pred C
Confidence 3
No 5
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=98.15 E-value=7e-07 Score=71.80 Aligned_cols=99 Identities=11% Similarity=0.218 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhh
Q 029928 43 QQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSD 117 (185)
Q Consensus 43 k~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d 117 (185)
++..+.-+...+|-.+.++|++.....+..-++..++..|+.+... +..+...| .++.+-|.++ -..-+++++
T Consensus 61 kelVR~Rk~~~rl~~~kaqL~sV~~rlqt~~s~~~v~~sM~~st~~--M~~~n~~m~l~~i~~tM~efekE~~k~~i~eE 138 (218)
T 3frt_A 61 KEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEE 138 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----CCCCCHHH--HHHHHHSTTSHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4566667888899999999999999888888889999999888877 45555555 6777766666 334457888
Q ss_pred hhcccccchhhHHHHHHHHHHHHHHh
Q 029928 118 TIDDALDNDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 118 ~~~~~~~~~~~eee~d~lv~qvl~E~ 143 (185)
+|++++++...+++.++.++.+++.+
T Consensus 139 mm~Da~d~~~~~~~~eee~d~~v~kV 164 (218)
T 3frt_A 139 MLEDTFESMDDQEEMEEEAEMEIDRI 164 (218)
T ss_dssp --------------CTTSTTTHHHHH
T ss_pred HHHHHHhcccccCCchHHHHHHHHHH
Confidence 89998886655555555666665544
No 6
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=96.83 E-value=0.00027 Score=54.84 Aligned_cols=136 Identities=13% Similarity=0.233 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHcCChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIK---RTAKTGNEGATKILARQLIRL-RQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKG 77 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik---~aakkg~~~~ari~Ak~lvr~-rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~ 77 (185)
.+.++.|+++-.++..+-| ..+|+ +++--..+.+|. =++..+.-+...+|....++|++.....+...++..
T Consensus 20 ~~~~r~Ldr~~~kle~~ekk~~~~Ikk----a~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~~v~~~lqt~~~~~~ 95 (179)
T 2gd5_A 20 RKEMRVVDRQIRDIQREEEKVKRSVKD----AAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLR 95 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666654443 33322 222112223332 234455556778888899999999988888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHh---hhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928 78 ASKAMAAMNKQMEPAKQAKVM--REFQKQSAQM---DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 78 ~~~~m~~~n~~~~~~~l~~~M--~~f~ke~~~~---~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~ 143 (185)
++.+|+..... +..+.+.| +++++-|.++ -..-++++++|++.+++..++++.+++++.+++.+
T Consensus 96 v~~am~~~~~~--M~~~n~~m~l~~i~~~M~e~~~e~~~~~~~~E~m~d~~~~~~~~~~~eee~d~~v~kV 164 (179)
T 2gd5_A 96 VAGSLQKSTEV--MKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLEDTFESMDDQEEMEEEAEMEIDRI 164 (179)
T ss_dssp HTSSCCCCSHH--HHTTTSSTTSSSCCHHHHHHHHHHHHHTSCC-------------------CTTHHHHT
T ss_pred HHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHHH
Confidence 88888777665 34444444 5555555555 44445568899998876655556566666665544
No 7
>2v6x_B DOA4-independent degradation protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.00067 Score=42.60 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=13.0
Q ss_pred cHHHHHHHHHhhcC
Q 029928 171 GIDELEKRLAALRN 184 (185)
Q Consensus 171 ~~d~l~~RL~~Lr~ 184 (185)
.+|||++||++||+
T Consensus 39 ~ddDLQARLdsLRR 52 (54)
T 2v6x_B 39 PDDDLQARLNTLKK 52 (54)
T ss_dssp CCHHHHHHHHHHHC
T ss_pred chHHHHHHHHHhcc
Confidence 68999999999996
No 8
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=94.92 E-value=0.51 Score=36.76 Aligned_cols=137 Identities=12% Similarity=0.129 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 029928 7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGA-SKAMAAM 85 (185)
Q Consensus 7 kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~-~~~m~~~ 85 (185)
|-...-++.+++|-..++.|..+.||+-+.++||-.+...=|.-+---.+-+..++.....+...-..++.+ +.++-..
T Consensus 30 Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~~R~~li~~~k~cp~~l~EAvsslIyAa 109 (191)
T 3frr_A 30 KKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTLIWAA 109 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHSCSSCCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhh
Confidence 334455677889999999999999999999999999988888777777777777766665533333333333 3355555
Q ss_pred Hhc-CCHHHHHHHH----HHHHHHHHHhh-------hhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh
Q 029928 86 NKQ-MEPAKQAKVM----REFQKQSAQMD-------MTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV 147 (185)
Q Consensus 86 n~~-~~~~~l~~~M----~~f~ke~~~~~-------i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~ 147 (185)
.+. -++|++..+= ..|-++|...- +-..++.- +.... -+.+-++..+..|+.++|++.
T Consensus 110 ~R~~~elpEL~~ir~~l~~KyGkeF~~~a~e~~~~~Vn~~iv~k-Ls~~~---P~~~lv~~yL~EIA~~y~V~w 179 (191)
T 3frr_A 110 PRLQSEVAELKIVADQLCAKYSKEYGKLCRTNQIGTVNDRLMHK-LSVEA---PPKILVERYLIEIAKNYNVPY 179 (191)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCHHHHHHHHTTTTSCSCHHHHHH-TCCSC---CCHHHHHHHHHHHHHHHTCCC
T ss_pred hcccccChHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCHHHHHH-cCCCC---cCHHHHHHHHHHHHHHcCCCC
Confidence 664 6888886553 44555555431 11222222 22111 135678888999999998865
No 9
>3ggy_A Increased sodium tolerance protein 1; ESCRT-III like, phosphoprotein, protein transport, endocytosis; 1.70A {Saccharomyces cerevisiae} PDB: 3ggz_A
Probab=94.82 E-value=0.71 Score=35.99 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 029928 7 ALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQAMHA--------HSSVAVGMKGA 78 (185)
Q Consensus 7 kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~~~~s--------~~~~~~~m~~~ 78 (185)
|-...-+..+++|-..++.|..+.||+-+.++||-.+...=|.-+---.+-+..++..... ....-..++.+
T Consensus 29 Kk~~~~k~~RrdIA~LL~~gk~~~AriRvE~iI~ed~~ie~~EilElyCelL~aR~~ll~~~~~e~~~~~k~cp~~l~EA 108 (193)
T 3ggy_A 29 KQQAIAKQSRRQVAQLLLTNKEQKAHYRVETLIHDDIHIELLEILELYCELLLARVQVINDISTEEQLVKEHMDDGINEA 108 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTCCSHHHHHHHSSSSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCHHHHHH
Confidence 3445556778899999999999999999999999998888777766666666666655544 12222233333
Q ss_pred -HHHHHHHHhcCCHHHHHHH----HHHHHHHHHHh------hhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcchh
Q 029928 79 -SKAMAAMNKQMEPAKQAKV----MREFQKQSAQM------DMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDV 147 (185)
Q Consensus 79 -~~~m~~~n~~~~~~~l~~~----M~~f~ke~~~~------~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~ 147 (185)
+.++-...+..++|++..+ ...|-++|... |+-..++.- +..... +.+-++..+..|+.++|++.
T Consensus 109 vsslIyAa~R~~elpEL~~ir~~l~~KyGkeF~~~a~en~~gVn~kiv~k-Ls~~~P---~~elv~~yL~EIA~ey~V~w 184 (193)
T 3ggy_A 109 IRSLIYAILFVDEVKELSQLKDLMAWKINVEFVNGVIADHIDVPEKIIKK-CSPSVP---KEELVDLYLKEIAKTYDVPY 184 (193)
T ss_dssp HHHHHHHGGGCTTCTTHHHHHHHHHHHTCHHHHHHHHHHCTTCCHHHHHH-HSCCCC---CHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhcccCCCChHHHHHHHHHHHHhCHHHHHHHHhcCCCCCHHHHHH-cCCCCc---CHHHHHHHHHHHHHHcCCCC
Confidence 3344455555788888544 44455665442 333333333 222111 35678899999999999876
Q ss_pred h
Q 029928 148 A 148 (185)
Q Consensus 148 ~ 148 (185)
+
T Consensus 185 ~ 185 (193)
T 3ggy_A 185 S 185 (193)
T ss_dssp H
T ss_pred C
Confidence 4
No 10
>3ggz_E Vacuolar protein-sorting-associated protein 46; novel MIM binding mode, phosphoprotein, coiled coil, endosome, membrane; 3.80A {Saccharomyces cerevisiae}
Probab=93.78 E-value=0.044 Score=29.60 Aligned_cols=18 Identities=39% Similarity=0.529 Sum_probs=15.0
Q ss_pred CCCccHHHHHHHHHhhcC
Q 029928 167 ASSSGIDELEKRLAALRN 184 (185)
Q Consensus 167 ~~~~~~d~l~~RL~~Lr~ 184 (185)
..++.+|.|.+||++||+
T Consensus 12 ~~eekEDkLAqRLRALR~ 29 (29)
T 3ggz_E 12 VDDEKEDKLAQRLRALRG 29 (29)
T ss_pred ccchhhHHHHHHHHHHcC
Confidence 345679999999999995
No 11
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=93.09 E-value=0.011 Score=34.54 Aligned_cols=14 Identities=36% Similarity=0.760 Sum_probs=11.8
Q ss_pred cHHHHHHHHHhhcC
Q 029928 171 GIDELEKRLAALRN 184 (185)
Q Consensus 171 ~~d~l~~RL~~Lr~ 184 (185)
++.+|+.||++||+
T Consensus 27 di~~MqsRLaALRS 40 (40)
T 2xze_Q 27 ALEAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 35679999999996
No 12
>2luh_B Vacuolar protein-sorting-associated protein 60; VTA1, VPS60, ESCRT, MVB, novel MIT recognition mode, protein transport, endocytosis; NMR {Saccharomyces cerevisiae}
Probab=80.88 E-value=1.2 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHH
Q 029928 89 MEPAKQAKVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDE 142 (185)
Q Consensus 89 ~~~~~l~~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E 142 (185)
+|+.+|...+.++.-.++..+-+++.++.+.+-...++.++++.+++++-+-+|
T Consensus 1 inIDkIedlqDem~Dl~e~~nEIQE~L~rsy~~pe~DdiDE~eL~aELdaL~de 54 (59)
T 2luh_B 1 INIDKLQDMQDEMLDLIEQGDELQEVLAMNNNSGELDDISDAELDAELDALAQE 54 (59)
T ss_dssp CHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHTTCCGGGTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccCCHHHHHHHHHHhhcc
Confidence 467788888888888888889899999988664322233466777777665554
No 13
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=77.43 E-value=1.2 Score=22.89 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=11.8
Q ss_pred cHHHHHHHHHhhcC
Q 029928 171 GIDELEKRLAALRN 184 (185)
Q Consensus 171 ~~d~l~~RL~~Lr~ 184 (185)
+.++|++||..||.
T Consensus 9 eledlqerlrklrk 22 (27)
T 3twe_A 9 ELEDLQERLRKLRK 22 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57899999999874
No 14
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=75.69 E-value=14 Score=24.27 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 029928 32 KILARQLIRLRQQ-IANLQGSRAQIRGIATHTQA 64 (185)
Q Consensus 32 ri~Ak~lvr~rk~-~~~l~~~~aql~sv~~~l~~ 64 (185)
|--|..++|.+|. ...+.+..+++..++.++.+
T Consensus 44 K~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~ 77 (79)
T 4abm_A 44 KRAALQALKRKKRYEKQLAQIDGTLSTIEFQREA 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4578888887764 44555777777777766544
No 15
>2hh7_A Hypothetical protein CSOR; 4-helix bundle, unknown function; 2.55A {Mycobacterium tuberculosis}
Probab=70.19 E-value=27 Score=24.91 Aligned_cols=47 Identities=15% Similarity=0.234 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 87 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~ 87 (185)
+++...||.+...|+.+|..=|+.-.....+...+.-+..++..++.
T Consensus 9 kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~~~~ 55 (119)
T 2hh7_A 9 KRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANR 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44567788889999999888887776777777777776666666653
No 16
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=63.01 E-value=23 Score=21.47 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 49 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~ 49 (185)
|..+..-++.-|+.|.+.|..+-+.+|..|+-..+.++.++.
T Consensus 7 L~EQ~~~I~~~I~qAk~~~r~DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 7 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHh
Confidence 344556678899999999999999999999998888887764
No 17
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=61.70 E-value=24 Score=22.69 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 49 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~ 49 (185)
|..+..-++.-|+.|.+.|..+-+.+|..||-..+.++.++.
T Consensus 25 L~EQ~~~I~~yI~qAk~~~r~DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 25 LLQQIHNITSFIRQAKAAGRMDEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 445566778899999999999999999999998888877654
No 18
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=53.37 E-value=62 Score=23.53 Aligned_cols=49 Identities=14% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029928 39 IRLRQQIANLQGSRAQIRGIATHTQAMHAHSSVAVGMKGASKAMAAMNK 87 (185)
Q Consensus 39 vr~rk~~~~l~~~~aql~sv~~~l~~~~s~~~~~~~m~~~~~~m~~~n~ 87 (185)
-.+++...||.+...|+.+|..=|+.-.....+...+.-+..++..++.
T Consensus 49 ~~Kk~ll~RLkRIeGQvrGI~rMIEedr~C~DIL~QlaAVrsAL~~v~~ 97 (136)
T 4adz_A 49 KQKAEHLKRLRRIEGQIRGLQRMVDEDVYCIDILTQVSASTKALQSFAL 97 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999999888777666666666666666666666553
No 19
>3aai_A Copper homeostasis operon regulatory protein; all alpha proteins, 4-helix bundle, transcription; 2.10A {Thermus thermophilus}
Probab=53.17 E-value=50 Score=22.32 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Q 029928 41 LRQQIANLQGSRAQIRGIATHTQAMH-AHSSVAVGMKGASKAMAAMNK 87 (185)
Q Consensus 41 ~rk~~~~l~~~~aql~sv~~~l~~~~-s~~~~~~~m~~~~~~m~~~n~ 87 (185)
+++...||-+...|+.+|..=|+.-. ....+...+..+..++..++.
T Consensus 13 k~~~l~RLkRieGQv~gI~rMiEe~~~~C~dIl~QlaAvr~Al~~~~~ 60 (94)
T 3aai_A 13 REEARRRLLSAKGHLEGILRMLEDEKVYCVDVLKQLKAVEGALDRVGE 60 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888889999888777666 666676666666666666553
No 20
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=50.62 E-value=24 Score=20.10 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHH
Q 029928 13 KKLVAEIKRTAKTGNEGATKILARQL 38 (185)
Q Consensus 13 ~k~~~~ik~aakkg~~~~ari~Ak~l 38 (185)
..++++|-.|...||.+++|.|-.+|
T Consensus 11 ~aiEQqiyvA~seGd~etv~~Le~QL 36 (40)
T 1gp8_A 11 DAIRKQMDAAASKGDVETYRKLKAKL 36 (40)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45788999999999999999887765
No 21
>2r6a_C DNAG primase, helicase binding domain, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_G 1z8s_A*
Probab=38.92 E-value=72 Score=21.92 Aligned_cols=37 Identities=11% Similarity=0.049 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQ 44 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~ 44 (185)
+.++-.++..+|..+...||.+.+.-++.++++.+++
T Consensus 103 ~~r~l~~~~~~i~~~~~~~d~~~~l~~~~el~~l~~~ 139 (143)
T 2r6a_C 103 KWLMLKVKEQEKTEAERRKDFLTAARIAKEMIEMKKM 139 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence 3444555666777777777777777777777766543
No 22
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=36.85 E-value=65 Score=21.99 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHhcCCHH----HHHHHHHHHHHHHHHh-hhhHHHhhhhhcccccchh---hHHHHHHHHHHHHHHhc
Q 029928 74 GMKGASKAMAAMNKQMEPA----KQAKVMREFQKQSAQM-DMTTEMMSDTIDDALDNDE---AEEETEELTNQVLDEIG 144 (185)
Q Consensus 74 ~m~~~~~~m~~~n~~~~~~----~l~~~M~~f~ke~~~~-~i~~e~m~d~~~~~~~~~~---~eee~d~lv~qvl~E~~ 144 (185)
.++..+++|..|-...++. .=..++.++-..+..+ --+..+++. . ++++ .-=++++.+++|+..|.
T Consensus 17 ~v~~n~~lL~EML~~~~p~~~~~~~~el~~eL~~~c~~~qp~i~~li~~-~----~dee~l~~lL~~ND~L~~vl~ry~ 90 (103)
T 1wrd_A 17 MVSGNVRVMSEMLTELVPTQAEPADLELLQELNRTCRAMQQRVLELIPQ-I----ANEQLTEELLIVNDNLNNVFLRHE 90 (103)
T ss_dssp HHHHHHHHHHHHHHHSCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-C----CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHhc-c----CCHHHHHHHHHhhHHHHHHHHHHH
Confidence 4455566666666666553 2346777777777766 334455542 1 1111 12255666677776664
No 23
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=32.67 E-value=80 Score=18.75 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIAN 47 (185)
Q Consensus 8 le~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~ 47 (185)
|..+..-++.-|+.|-+.|..+-+.+|-+||=....++.+
T Consensus 6 L~EQ~~~I~~~I~qAk~~rRfdEV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 6 LAQQIKNIHSFIHQAKAAGRMDEVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHh
Confidence 3445566778899999999999999999999888777654
No 24
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=29.48 E-value=47 Score=27.60 Aligned_cols=76 Identities=5% Similarity=0.087 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhhhH---HHhhhhhcccccchhhHHHHHHHHHHHHHHhcchhhhhc
Q 029928 75 MKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQMDMTT---EMMSDTIDDALDNDEAEEETEELTNQVLDEIGVDVASQL 151 (185)
Q Consensus 75 m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~~i~~---e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~~~~~~l 151 (185)
+...+..|..+. .++...+..++.+|...+...+.+. +++...+..+++. +.+..+++++....+....+.|
T Consensus 39 i~~l~~~ma~l~-~v~~~~~~~Vl~EF~~~~~~~~~i~~gg~~~~~~L~~aLg~----~~A~~ll~~i~~~~~~~~~~~L 113 (329)
T 3hjl_A 39 LQKLFALAKDLE-SVPEEEIENIAEELLDEIKKAGIKIKKPEEFIENIKKVIPP----TLAEKFRGILELGDAEKILKEI 113 (329)
T ss_dssp HHHHHHHHHTCC-CCCHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHSCC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-CCCHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCH----HHHHHHHHHHhccccCCHHHHH
Confidence 455566666554 5889999999999999988865432 6777777777763 4677788887765443444444
Q ss_pred ccCC
Q 029928 152 SAAP 155 (185)
Q Consensus 152 ~~~P 155 (185)
..++
T Consensus 114 ~~~d 117 (329)
T 3hjl_A 114 EKVD 117 (329)
T ss_dssp HTSC
T ss_pred HCCC
Confidence 4443
No 25
>2lxm_B Charged multivesicular BODY protein 5; MIT, protein transport; NMR {Homo sapiens}
Probab=27.79 E-value=42 Score=20.73 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=9.0
Q ss_pred hhhhHHHhhhhhcc-cccchhhHHHHHHHHHHH
Q 029928 108 MDMTTEMMSDTIDD-ALDNDEAEEETEELTNQV 139 (185)
Q Consensus 108 ~~i~~e~m~d~~~~-~~~~~~~eee~d~lv~qv 139 (185)
.+-+++.++.+++. .+|+++.+.|.++|-+..
T Consensus 4 a~EIqealsr~~g~~diDEdEL~aELe~LeqE~ 36 (57)
T 2lxm_B 4 ANEINEALSRSYGTPELDEDDLEAELDALGDEL 36 (57)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 34456666666542 244444455555544444
No 26
>1z0j_B FYVE-finger-containing RAB5 effector protein RABE, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Homo sapiens} SCOP: a.2.19.1
Probab=27.17 E-value=1.2e+02 Score=18.85 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHH
Q 029928 9 QQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANL 48 (185)
Q Consensus 9 e~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l 48 (185)
..+-.-++.-|+.|.+.|..+-+-+|..||=....++.++
T Consensus 15 ~EQi~~I~~yI~qAk~~~R~DEV~~Le~NLrEL~~ei~~~ 54 (59)
T 1z0j_B 15 LQQIDNIKAYIFDAKQCGRLDEVEVLTENLRELKHTLAKQ 54 (59)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 3444567888999999999999999999998877766554
No 27
>2j5y_A GA module, peptostreptococcal albumin-binding protein; protein binding, cell WALL, peptidoglycan-anchor; 1.4A {Peptostreptococcus magnus} SCOP: a.8.1.2 PDB: 2vdb_B* 1gab_A 1prb_A 1tf0_B*
Probab=21.93 E-value=87 Score=19.51 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHh
Q 029928 96 KVMREFQKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 96 ~~M~~f~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~ 143 (185)
+.=...-+++.+.|+.+.++-+.++++-. -|++..+.++++...
T Consensus 17 eAKe~Ai~el~~~GItsd~y~~~In~AkT----vEGV~al~~Eil~ah 60 (61)
T 2j5y_A 17 NAKEDAIAELKKAGITSDFYFNAINKAKT----VEEVNALKNEILKAH 60 (61)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHCCS----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHhhhhhh----HHHHHHHHHHHHhcC
Confidence 33344557888999999999998887643 357889998888753
No 28
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=21.50 E-value=2e+02 Score=19.67 Aligned_cols=38 Identities=18% Similarity=0.177 Sum_probs=26.3
Q ss_pred HHhhhhHHHhhhhhccccc--chhhHHHHHHHHHHHHHHh
Q 029928 106 AQMDMTTEMMSDTIDDALD--NDEAEEETEELTNQVLDEI 143 (185)
Q Consensus 106 ~~~~i~~e~m~d~~~~~~~--~~~~eee~d~lv~qvl~E~ 143 (185)
...--...=|++++...++ +..++++++.+++.+..+.
T Consensus 16 ~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e~ 55 (104)
T 3um3_B 16 ADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQEE 55 (104)
T ss_pred HHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHH
Confidence 3333444567788887774 3456889999999888764
No 29
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=21.15 E-value=1.9e+02 Score=19.22 Aligned_cols=52 Identities=23% Similarity=0.439 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 5 IGALQQEEKKLVAEIKRTAKTGNEGATKILARQLIRLRQQIANLQGSRAQIR 56 (185)
Q Consensus 5 ~~kle~ee~k~~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~~~~aql~ 56 (185)
.+.||.+-+.++.+|...-.++-....-.|=..+-..|+++..+..-+++|.
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~ 76 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVE 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888988887766554333333455555556666665555554443
No 30
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=20.02 E-value=96 Score=16.12 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029928 8 LQQEEKKLVAEIKRTAK 24 (185)
Q Consensus 8 le~ee~k~~~~ik~aak 24 (185)
|..+-+.+++.|++++.
T Consensus 11 cdqeikelennirkals 27 (31)
T 2wh0_Q 11 CDQEIKELENNIRKALS 27 (31)
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 66777888888988874
Done!