Query 029928
Match_columns 185
No_of_seqs 109 out of 730
Neff 7.3
Searched_HMMs 13730
Date Mon Mar 25 09:03:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029928.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029928hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d256ba_ a.24.3.1 (A:) Cytochro 52.9 11 0.00081 24.4 4.8 34 16-49 72-105 (106)
2 d1ivsa1 a.2.7.3 (A:797-862) Va 38.6 32 0.0024 19.8 6.3 61 1-63 2-63 (66)
3 d1u9pa1 a.43.1.1 (A:72-107) Ar 34.5 16 0.0012 18.6 2.5 20 131-150 2-21 (36)
4 d256ba_ a.24.3.1 (A:) Cytochro 29.5 63 0.0046 20.4 6.0 38 71-108 3-40 (106)
5 d2jdig1 c.49.2.1 (G:1-272) ATP 22.8 31 0.0022 25.2 3.4 26 55-80 3-28 (272)
6 d2piha1 a.281.1.1 (A:2-124) Un 22.3 91 0.0067 19.8 9.1 24 129-152 94-117 (123)
7 d1o3xa_ a.7.8.1 (A:) ADP-ribos 20.0 1E+02 0.0075 19.5 5.8 43 75-117 30-78 (112)
8 d2dkla1 a.5.2.1 (A:8-79) Trinu 16.4 45 0.0033 19.9 2.4 25 97-121 13-37 (72)
9 d2azeb1 e.63.1.2 (B:201-301) T 12.7 73 0.0053 20.1 2.9 23 2-24 7-29 (101)
10 d1ng6a_ a.182.1.1 (A:) Hypothe 11.4 2.1E+02 0.015 18.9 11.1 36 102-145 78-113 (148)
No 1
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=52.85 E-value=11 Score=24.40 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHH
Q 029928 16 VAEIKRTAKTGNEGATKILARQLIRLRQQIANLQ 49 (185)
Q Consensus 16 ~~~ik~aakkg~~~~ari~Ak~lvr~rk~~~~l~ 49 (185)
..+|..++..|+.+.|+..+..+-..|+..=+.|
T Consensus 72 ld~i~~la~~G~l~eAk~~l~~l~~~r~~YHkk~ 105 (106)
T d256ba_ 72 IDDALKLANEGKVKEAQAAAEQLKTTRNAYHQKY 105 (106)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4678899999999999999999999988665443
No 2
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=38.61 E-value=32 Score=19.78 Aligned_cols=61 Identities=16% Similarity=0.203 Sum_probs=38.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 1 MEKEIGALQQEEKKLVAEIKRTAKT-GNEGATKILARQLIRLRQQIANLQGSRAQIRGIATHTQ 63 (185)
Q Consensus 1 ldRe~~kle~ee~k~~~~ik~aakk-g~~~~ari~Ak~lvr~rk~~~~l~~~~aql~sv~~~l~ 63 (185)
++.|+.+|+++-.++...|...-++ +|.....-.=.++|. +...++..+..++..+...|.
T Consensus 2 ~~~E~~RL~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~--~~k~kl~~~~~~~~~l~~~l~ 63 (66)
T d1ivsa1 2 VEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVE--AEEARLKENLEQAERIREALS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCChHHHHhCCHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999988876654 555554444445554 234455566666666555543
No 3
>d1u9pa1 a.43.1.1 (A:72-107) Arc repressor {Salmonella bacteriophage P22 [TaxId: 10754]}
Probab=34.50 E-value=16 Score=18.58 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhcchhhhh
Q 029928 131 ETEELTNQVLDEIGVDVASQ 150 (185)
Q Consensus 131 e~d~lv~qvl~E~~~~~~~~ 150 (185)
|+-+++.+|++|.|-.++..
T Consensus 2 evldlvrkvaeeng~s~ns~ 21 (36)
T d1u9pa1 2 EVLDLVRKVAEENGRSVNSE 21 (36)
T ss_dssp HHHHHHHHHHHHHTCCHHHH
T ss_pred cHHHHHHHHHHHcCcchhHH
Confidence 56678999999999876643
No 4
>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}
Probab=29.53 E-value=63 Score=20.41 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 029928 71 VAVGMKGASKAMAAMNKQMEPAKQAKVMREFQKQSAQM 108 (185)
Q Consensus 71 ~~~~m~~~~~~m~~~n~~~~~~~l~~~M~~f~ke~~~~ 108 (185)
+..+|......++.+.+.-+...|...|++|..-+.+.
T Consensus 3 l~~~M~~m~~a~k~~~~A~s~~Ei~~~m~~lr~a~~d~ 40 (106)
T d256ba_ 3 LEDNMETLNDNLKVIEKADNAAQVKDALTKMRAAALDA 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888899999999999998777654
No 5
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=22.85 E-value=31 Score=25.17 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029928 55 IRGIATHTQAMHAHSSVAVGMKGASK 80 (185)
Q Consensus 55 l~sv~~~l~~~~s~~~~~~~m~~~~~ 80 (185)
|..+..|+.+..++.+++.+|+-++.
T Consensus 3 Lkeik~RI~Sv~~t~kITkAMkmVAa 28 (272)
T d2jdig1 3 LKDITRRLKSIKNIQKITKSMKMVAA 28 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777777776653
No 6
>d2piha1 a.281.1.1 (A:2-124) Uncharacterized protein YmcA {Bacillus subtilis [TaxId: 1423]}
Probab=22.31 E-value=91 Score=19.78 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhcchhhhhcc
Q 029928 129 EEETEELTNQVLDEIGVDVASQLS 152 (185)
Q Consensus 129 eee~d~lv~qvl~E~~~~~~~~l~ 152 (185)
+...+.+++.|-.-++-.++..+.
T Consensus 94 e~~l~~lL~~V~~~I~~~Is~~i~ 117 (123)
T d2piha1 94 QMEVNDLLQLVAHTISNQVTNEII 117 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhc
Confidence 445555666655555555555443
No 7
>d1o3xa_ a.7.8.1 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.97 E-value=1e+02 Score=19.51 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHHHHHh-hhhHHHhhh
Q 029928 75 MKGASKAMAAMNKQMEPA-----KQAKVMREFQKQSAQM-DMTTEMMSD 117 (185)
Q Consensus 75 m~~~~~~m~~~n~~~~~~-----~l~~~M~~f~ke~~~~-~i~~e~m~d 117 (185)
++..+++|..|-...+++ .-..++.+|-..+..+ --+..++++
T Consensus 30 v~~n~~lL~eML~~~~~~~~~~~~~~ell~eL~~~c~~~qp~i~~li~~ 78 (112)
T d1o3xa_ 30 VNNNVKLLTEMVMSHSQGGAAAGSSEDLMKELYQRCERMRPTLFRLASD 78 (112)
T ss_dssp HHHHHHHHHHHHHHTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555444332 2235677777777666 444455544
No 8
>d2dkla1 a.5.2.1 (A:8-79) Trinucleotide repeat containing 6c protein, TNRC6C {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.38 E-value=45 Score=19.91 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhhHHHhhhhhcc
Q 029928 97 VMREFQKQSAQMDMTTEMMSDTIDD 121 (185)
Q Consensus 97 ~M~~f~ke~~~~~i~~e~m~d~~~~ 121 (185)
+|.-|.+||.+||+..+--++++-.
T Consensus 13 iMnp~~KQfsnMGf~re~~e~~l~s 37 (72)
T d2dkla1 13 IMSRLIKQLTDMGFPREPAEEALKS 37 (72)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhHHHHHHhhcCCcCCChHHhhhc
Confidence 5899999999999988887777643
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.68 E-value=73 Score=20.09 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 029928 2 EKEIGALQQEEKKLVAEIKRTAK 24 (185)
Q Consensus 2 dRe~~kle~ee~k~~~~ik~aak 24 (185)
..|+..|+.+|+.+...|+.+.+
T Consensus 7 ~~El~~L~~~E~~LD~li~~~~~ 29 (101)
T d2azeb1 7 TQDLRQLQESEQQLDHLMNICTT 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777777665543
No 10
>d1ng6a_ a.182.1.1 (A:) Hypothetical protein YqeY {Bacillus subtilis [TaxId: 1423]}
Probab=11.38 E-value=2.1e+02 Score=18.87 Aligned_cols=36 Identities=25% Similarity=0.516 Sum_probs=23.8
Q ss_pred HHHHHHhhhhHHHhhhhhcccccchhhHHHHHHHHHHHHHHhcc
Q 029928 102 QKQSAQMDMTTEMMSDTIDDALDNDEAEEETEELTNQVLDEIGV 145 (185)
Q Consensus 102 ~ke~~~~~i~~e~m~d~~~~~~~~~~~eee~d~lv~qvl~E~~~ 145 (185)
+++...+.+++++.=.. + .++|++.+|.+++.++|.
T Consensus 78 e~e~~Ei~il~~yLP~~----l----seeEl~~~v~~~i~e~~a 113 (148)
T d1ng6a_ 78 DKVQKELDILEVYLPEQ----L----SEEELRTIVNETIAEVGA 113 (148)
T ss_dssp HHHHHHHHHHGGGSCCC----C----CHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcccc----C----CHHHHHHHHHHHHHHhCC
Confidence 34444555555543332 2 368999999999999885
Done!