BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029929
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 290 bits (742), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 138/184 (75%), Positives = 158/184 (85%), Gaps = 3/184 (1%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV +F L++WR+EFLIQASP DPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
VVLGNK D++ +R V+ K+A+AWC SK NIPYFETSAKE NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
+ E
Sbjct: 178 TEVE 181
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 289 bits (740), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 138/184 (75%), Positives = 158/184 (85%), Gaps = 3/184 (1%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV +F L++WR+EFLIQASP DPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
VVLGNK D++ +R V+ K+A+AWC SK NIPYFETSAKE NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
+ E
Sbjct: 178 TEVE 181
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 288 bits (737), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 138/184 (75%), Positives = 157/184 (85%), Gaps = 3/184 (1%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERFQSLGVAFYRGADCCVLV+DV +F L++WR+EFLIQASP DPENFPF
Sbjct: 61 IWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
VVLGNK D + +R V+ K+A+AWC SK NIPYFETSAKE NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDFE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
+ E
Sbjct: 178 TEVE 181
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 286 bits (733), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 137/184 (74%), Positives = 157/184 (85%), Gaps = 3/184 (1%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M SR+++LLKVIILGDSGVGKTSLMNQYVN+KFSNQYKATIGADFLTKEV +DRL T+Q
Sbjct: 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAG ERFQSLGVAFYRGADCCVLV+DV +F L++WR+EFLIQASP DPENFPF
Sbjct: 61 IWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
VVLGNK D++ +R V+ K+A+AWC SK NIPYFETSAKE NVE AF+ IA+NALK E
Sbjct: 121 VVLGNKIDLE---NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177
Query: 181 PQEE 184
+ E
Sbjct: 178 TEVE 181
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 241 bits (614), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 115/179 (64%), Positives = 145/179 (81%), Gaps = 2/179 (1%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTL 59
M+SR++ +LKVIILGDSGVGKTSLM++YVN K+S QYKATIGADFLTKEV + D++ T+
Sbjct: 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 60 QIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
Q+WDTAGQERFQSLGVAFYRGADCCVLVYDV SF+N+ +WR+EFL+ A+ + PE FP
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
FV+LGNK D + + ++VSEK A+ S G+IP F TSAK NV+ AFE IA++AL+
Sbjct: 121 FVILGNKIDAE-ESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 201 bits (511), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 97/183 (53%), Positives = 127/183 (69%), Gaps = 3/183 (1%)
Query: 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
S + +LLKVI+LGD GVGK+SLMN+YV KF +Q TIG +FL ++++ + R TLQI
Sbjct: 1 GSGKSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQI 60
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
WDTAGQERF+SL FYRGADCC+L + V+ +SF+NL NW++EF+ A DPE+FPFV
Sbjct: 61 WDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
VLGNK D + R V+ ++A+ WC G+ PY ETSAK+ NV AFE + L E
Sbjct: 121 VLGNKVDKE---DRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLAVEE 177
Query: 182 QEE 184
Q E
Sbjct: 178 QLE 180
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 198 bits (504), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 93/173 (53%), Positives = 123/173 (71%), Gaps = 3/173 (1%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K+++ + T+QIWDTAGQ
Sbjct: 7 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 66
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +PE+FPFV+LGNK
Sbjct: 67 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
D+ + R VS ++A+AWC G+ PYFETSAK+ NV AAFE + L E
Sbjct: 127 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATE 176
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 124/173 (71%), Gaps = 3/173 (1%)
Query: 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
+ L K+I+LGD GVGK+SLMN+YV KF +Q TIG +FL K+++ + T+QIWDT
Sbjct: 8 KSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDT 67
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
AGQERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +PE+FPFV+LG
Sbjct: 68 AGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILG 127
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
NKTD+ R VS ++A+AWC G+ PYFETSAK+ NV AAFE + L
Sbjct: 128 NKTDI---KERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRIL 177
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 197 bits (500), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/170 (54%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI+LGD GVGK+SLMN+YV KF Q TIG +FL K+++ + T+QIWDTAGQ
Sbjct: 9 LFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+SL FYRG+DCC+L + V+ +SF NL+NW++EF+ A +PE+FPFV+LGNK
Sbjct: 69 ERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKI 128
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ + R VS ++A+AWC G+ PYFETSAK+ NV AAFE + L
Sbjct: 129 DI---SERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 175
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/173 (41%), Positives = 104/173 (60%), Gaps = 7/173 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQER
Sbjct: 10 KLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQER 69
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ SL +YRGA ++VYD+ ++F W +E QASPS + GNK D+
Sbjct: 70 YHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPS----IVIALAGNKADL 125
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
N R+V ++A+A+ A ++ + ETSAK NV F IAK K+EPQ
Sbjct: 126 --ANKRMVEYEEAQAY-ADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQ 175
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + +++ Y +TIG DF + + E++ LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV SFDN+ W +E A EN +++GNK
Sbjct: 69 ERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYA----MENVNKLLVGNKC 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ + RVV+ + + S G I + ETSAK +NVE AF +A
Sbjct: 125 DL--VSKRVVTSDEGRELADSHG-IKFIETSAKNAYNVEQAFHTMA 167
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 129 bits (323), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +S+ N+ W +E AS EN +++GNK+
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE AF +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 128 bits (322), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 9 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 68
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +S+ N+ W +E AS EN +++GNK+
Sbjct: 69 ERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYAS----ENVNKLLVGNKS 124
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE AF +A
Sbjct: 125 DLT--TKKVVDNTTAKEFADSLG-IPFLETSAKNATNVEQAFMTMA 167
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 109/175 (62%), Gaps = 7/175 (4%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA L K++++GDSGVGKT ++ ++ F++ + +TIG DF + ++ + + LQ
Sbjct: 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERF+++ A+YRGA +LVYD+ KSFDN+ NW AS +D E
Sbjct: 61 IWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK--- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
++LGNK DV+ + R VS+++ + G I + ETSAK NVE AF +A++
Sbjct: 117 MILGNKCDVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 168
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/175 (41%), Positives = 96/175 (54%), Gaps = 7/175 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S++ ++V F + TIGA F+TK V + L IWDTAGQE
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF SL +YRG+ V+VYD+ SF L W +E PEN + GNK D
Sbjct: 84 RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKEL----KEHGPENIVMAIAGNKCD 139
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
+ + R V K AK + S G I ETSAK N+E F+ I++ +P E
Sbjct: 140 LS--DIREVPLKDAKEYAESIGAI-VVETSAKNAINIEELFQGISRQIPPLDPHE 191
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 127 bits (320), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 25 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 85 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 141 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 183
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 104/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 66 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 122 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 164
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 127 bits (319), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 107/168 (63%), Gaps = 7/168 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGKT ++ ++ F++ + +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYD+ KSFDN+ NW AS +D E ++LGNK
Sbjct: 66 ERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHAS-ADVEK---MILGNKC 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
DV+ + R VS+++ + G I + ETSAK NVE AF +A++
Sbjct: 122 DVN--DKRQVSKERGEKLALDYG-IKFMETSAKANINVENAFFTLARD 166
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 16 LFKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 75
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 76 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 131
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 132 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 174
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 127 bits (319), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK+
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 127 bits (318), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 107/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 20 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 79
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK+
Sbjct: 80 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 136 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 177
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 33 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 92
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK
Sbjct: 93 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKC 148
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F A
Sbjct: 149 DLT--TKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFXTXA 191
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 103/164 (62%), Gaps = 7/164 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQER
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK D+
Sbjct: 61 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 116
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 117 --TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 157
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAGQ
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++ + A+YRGA +LVYD+ +++N+ W +E A N +++GNK+
Sbjct: 65 ERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K N+ + ETSA + NVE AF+ I
Sbjct: 121 DL--RHLRAVPTDEARAF-AEKNNLSFIETSALDSTNVEEAFKNI 162
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 68 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 171
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 8/178 (4%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA L K++I+GDSGVGK+SL+ ++ + FS Y TIG DF + V+ LQ
Sbjct: 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQ 61
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERF+++ +YRG ++VYDV +SF N+ W E + ++
Sbjct: 62 IWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEI-----NQNCDDVCR 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+++GNK D +VV + A + G I FETSAKE NVE F CI + L+
Sbjct: 117 ILVGNKN--DDPERKVVETEDAYKFAGQMG-IQLFETSAKENVNVEEMFNCITELVLR 171
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 103/166 (62%), Gaps = 7/166 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQ
Sbjct: 8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++G K
Sbjct: 68 ERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGIKC 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ +VV AK + S G IP+ ETSAK NVE +F +A
Sbjct: 124 DL--TTKKVVDYTTAKEFADSLG-IPFLETSAKNATNVEQSFMTMA 166
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK+
Sbjct: 89 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 145 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 114/179 (63%), Gaps = 9/179 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
L K++++GDSGVGK++L++++ +F+ + K+TIG +F TK +Q ++ ++ QIWDTAG
Sbjct: 7 LFKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAG 66
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
QER++++ A+YRGA +LVYD+ SF+N+ W +E A N +++GNK
Sbjct: 67 QERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADS----NIVILLVGNK 122
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEEE 185
+D+ + RV+++ A + A K + + ETSA E NVE AF + N + N Q+++
Sbjct: 123 SDLK--HLRVINDNDATQY-AKKEKLAFIETSALEATNVELAFHQLL-NEIYNVRQKKQ 177
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 106/165 (64%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 8 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N +++GNK+
Sbjct: 68 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIMLVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 124 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 71/181 (39%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLF 57
L+K + LGDSGVGKTS++ QY + KF++++ T+G DF K V + +
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRI 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ +SF N+ NW + + A +P+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
V+ GNK+D++ + R V E++A+ A K IPYFETSA G N+ A E + +
Sbjct: 130 --IVLCGNKSDLE--DQRAVKEEEARE-LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184
Query: 178 K 178
K
Sbjct: 185 K 185
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 8 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 68 RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 123
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 124 L--ANKRAVDFQEAQSY-ADDNSLLFXETSAKTSXNVNEIFXAIAKKLPKN 171
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/185 (39%), Positives = 108/185 (58%), Gaps = 16/185 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V + +
Sbjct: 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKV 84
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAGQERF+SL AF+R A +L++D+ +SF N+ NW + A +P+
Sbjct: 85 HLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 143
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
V++GNK D+ + R V+E++A+ A K IPYFETSA G NVE A E + +
Sbjct: 144 --IVLIGNKADLP--DQREVNERQARE-LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198
Query: 178 KNEPQ 182
K Q
Sbjct: 199 KRMEQ 203
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 123 bits (309), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 101/171 (59%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 7 FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ N R V ++A+++ A ++ + ETSAK NV F IAK KN
Sbjct: 123 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKN 170
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 123 bits (308), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAGQE
Sbjct: 4 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +F NW +E QASP N + GNK D
Sbjct: 64 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 119
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ + R V ++A+A+ A ++ + ETSAK NV F IAK
Sbjct: 120 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 162
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 11 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 70
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N ++GNK+
Sbjct: 71 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 127 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 123 bits (308), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 105/165 (63%), Gaps = 7/165 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KV+++GDSGVGK++L++++ +F+ + K+TIG +F T+ +Q + + QIWDTAG
Sbjct: 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGL 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LVYD+ +++N+ W +E A N ++GNK+
Sbjct: 65 ERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS----NIVIXLVGNKS 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
D+ + R V +A+A+ A K + + ETSA + NVEAAF+ I
Sbjct: 121 DLR--HLRAVPTDEARAF-AEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 106/182 (58%), Gaps = 7/182 (3%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+ R L K II+GD+GVGK+ L+ Q+ +++F + TIG +F + V + + LQ
Sbjct: 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQ 73
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQE F+S+ ++YRGA +LVYD+ ++F++L +W E+ A N
Sbjct: 74 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED----ARQHSSSNMVI 129
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+++GNK+D++ + R V ++ +A+ G I + ETSAK NVE AF AK +
Sbjct: 130 MLIGNKSDLE--SRRDVKREEGEAFAREHGLI-FMETSAKTACNVEEAFINTAKEIYRKI 186
Query: 181 PQ 182
Q
Sbjct: 187 QQ 188
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ +SF N+ NW + A +P+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
V++GNK D+ + R V+E++A+ A K IPYFETSA G NVE + E + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 K 178
K
Sbjct: 185 K 185
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 120 bits (302), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 99/169 (58%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 2 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF+SL ++ R + V+VYD+ + SF W ++ + +++GNKTD
Sbjct: 62 RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDD----VRTERGSDVIIMLVGNKTD 117
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ + R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 118 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 159
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TI A FLT+ V +D +IWDTAGQE
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +F NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ + R V ++A+A+ A ++ + ETSAK NV F IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 97/166 (58%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +F NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP----NIVIALAGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ + R V ++A+A+ A ++ + ETSAK NV F IAK
Sbjct: 122 L--ASKRAVEFQEAQAY-ADDNSLLFMETSAKTAMNVNEIFMAIAK 164
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 7 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF+SL ++ R + V+VYD+ + SF W ++ + + +++GNKTD
Sbjct: 67 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 122
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ + R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 123 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K+++LG+S VGK+SL+ ++V +F ++TIGA FLT+ V +D +IWDTAG E
Sbjct: 6 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R+ SL +YRGA ++VYD+ +SF NW +E QASP N + GNK D
Sbjct: 66 RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP----NIVIALSGNKAD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ N R V ++A+++ A ++ + ETSAK NV F IAK
Sbjct: 122 L--ANKRAVDFQEAQSY-ADDNSLLFMETSAKTSMNVNEIFMAIAK 164
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 7/183 (3%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M S L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ + +
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+++GNK D+ + RVV AK + A +P+ ETSA + NVE AF +A+ ++
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 PQE 183
Q+
Sbjct: 174 SQQ 176
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 111/183 (60%), Gaps = 7/183 (3%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M S L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQ
Sbjct: 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQ 60
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ + +
Sbjct: 61 IWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK---- 116
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+++GNK D+ + RVV AK + A +P+ ETSA + NVE AF +A+ ++
Sbjct: 117 LLVGNKCDLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173
Query: 181 PQE 183
Q+
Sbjct: 174 SQQ 176
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQE
Sbjct: 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF+SL ++ R + V+VYD+ SF + W ++ + + +++GNKTD
Sbjct: 75 RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGS----DVIIMLVGNKTD 130
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ + R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 131 L--SDKRQVSTEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 172
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 95/166 (57%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S++ ++V F TIGA F+TK VQ+++ L IWDTAGQE
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF++L +YRG+ ++VYD+ ++F L NW E PS + GNK D
Sbjct: 66 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 121
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ + R V E+ AK + S I + ETSAK N+ F I++
Sbjct: 122 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 164
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 120 bits (300), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAG ERF+SL AF+R A +L +D+ +SF N+ NW + A +P+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
V++GNK D+ + R V+E++A+ A K IPYFETSA G NVE + E +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 107/181 (59%), Gaps = 16/181 (8%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAG ERF+SL AF+R A +L++D+ +SF N+ NW + A +P+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
V++GNK D+ + R V+E++A+ A K IPYFETSA G NVE + E + +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETLLDLIM 184
Query: 178 K 178
K
Sbjct: 185 K 185
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 69/175 (39%), Positives = 104/175 (59%), Gaps = 16/175 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LF 57
L+K++ LGDSGVGKT+ + +Y + KF+ ++ T+G DF K V ++ +
Sbjct: 11 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKV 70
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN 117
LQ+WDTAG ERF+SL AF+R A +L +D+ +SF N+ NW + A +P+
Sbjct: 71 HLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPD- 129
Query: 118 FPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172
V++GNK D+ + R V+E++A+ A K IPYFETSA G NVE + E +
Sbjct: 130 --IVLIGNKADLP--DQREVNERQARE-LAEKYGIPYFETSAATGQNVEKSVETL 179
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 99/169 (58%), Gaps = 7/169 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAGQER
Sbjct: 4 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+SL ++ R + V+VYD+ + SF + W ++ + +++GNKTD+
Sbjct: 64 FRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDD----VRTERGSDVIIMLVGNKTDL 119
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ E + + A + ++ + ETSAK G+NV+ F +A L+
Sbjct: 120 ADKRQITIEEGEQR---AKELSVMFIETSAKTGYNVKQLFRRVASALLE 165
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/174 (37%), Positives = 103/174 (59%), Gaps = 7/174 (4%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+ S L K II+GD+GVGK+ L+ Q+ +++F + TIG +F + + + + LQ
Sbjct: 3 LGSAYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQ 62
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQE F+S+ ++YRGA +LVYD+ +F++L W E+ A N
Sbjct: 63 IWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLED----ARQHSNSNMVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+++GNK+D++ + R V +++ +A+ G I + ETSAK NVE AF AK
Sbjct: 119 MLIGNKSDLE--SRREVKKEEGEAFAREHGLI-FMETSAKTASNVEEAFINTAK 169
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 119 bits (299), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 66/166 (39%), Positives = 94/166 (56%), Gaps = 7/166 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV +LGD+GVGK+S+M ++V F TIGA F+TK VQ+++ L IWDTAG E
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF++L +YRG+ ++VYD+ ++F L NW E PS + GNK D
Sbjct: 67 RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS----IVVAIAGNKCD 122
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+ + R V E+ AK + S I + ETSAK N+ F I++
Sbjct: 123 LT--DVREVMERDAKDYADSIHAI-FVETSAKNAININELFIEISR 165
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 119 bits (298), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 67/166 (40%), Positives = 97/166 (58%), Gaps = 8/166 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
KV+++GDSGVGKT L+ ++ + F + + +T+G DF K + + LQ+WDTAGQE
Sbjct: 12 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF+S+ A+YR A +L+YDV SFDN+ W L + + ++LGNK
Sbjct: 72 RFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW----LTEIHEYAQHDVALMLLGNK-- 125
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
VD + RVV + + G +P+ ETSAK G NV+ AF IAK
Sbjct: 126 VDSAHERVVKREDGEKLAKEYG-LPFMETSAKTGLNVDLAFTAIAK 170
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQIWDTAGQ
Sbjct: 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYD+ ++F N+ W + + +D V GNK+
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKT--VNEHANDEAQLLLV--GNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D++ +RVV+ + +A G IP+ E+SAK NV F +AK
Sbjct: 119 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 119 bits (297), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAGQ
Sbjct: 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 79
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYDV ++F N+ W + A+ + +++GNK+
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 135
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D++ +RVV+ + +A G IP+ E+SAK NV F +AK
Sbjct: 136 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 178
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 102/167 (61%), Gaps = 8/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
++K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAGQ
Sbjct: 7 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 66
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYDV ++F N+ W + A+ + +++GNK+
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 122
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D++ +RVV+ + +A G IP+ E+SAK NV F +AK
Sbjct: 123 DME---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 165
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/164 (36%), Positives = 105/164 (64%), Gaps = 7/164 (4%)
Query: 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
+L K++++GDSGVGK++L++++ +F+ K+TIG +F T+ ++ E + QIWDTAG
Sbjct: 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAG 71
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
QER++++ A+YRGA ++VYD++ S++N N+W E A +N ++GNK
Sbjct: 72 QERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNK 127
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
+D+ + R V +++K + A + + + ETSA NV+ AFE
Sbjct: 128 SDL--AHLRAVPTEESKTF-AQENQLLFTETSALNSENVDKAFE 168
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/171 (37%), Positives = 98/171 (57%), Gaps = 6/171 (3%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L+VII+G GVGKTSLM ++ + F K+T+G DF K V+ + LQIWDTAGQE
Sbjct: 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF S+ A+YR A +LVYD+ ++FD+L W + AS E+ +++GNK D
Sbjct: 87 RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLD 142
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
+ R ++ ++ + + + + E SAK+ FNV+ F + + LK
Sbjct: 143 CE--TDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 15/168 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG ER
Sbjct: 8 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 67
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+SL ++ R + V+VYD+ + SF W ++ + + +++GNKTD+
Sbjct: 68 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDL 123
Query: 130 DGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 124 --ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++G+SGVGK+ L+ ++ + ++N Y +TIG DF K V+ + + LQIWDTAGQ
Sbjct: 21 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQ 80
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRG+ ++VYDV +SF+ + W +E A+ + + +++GNK
Sbjct: 81 ERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK----LLVGNKC 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D+ + RVV AK + A +P+ ETSA + NVE AF +A+
Sbjct: 137 DLK--DKRVVEYDVAKEF-ADANKMPFLETSALDSTNVEDAFLTMAR 180
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 117 bits (294), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/168 (39%), Positives = 99/168 (58%), Gaps = 15/168 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG ER
Sbjct: 18 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLER 77
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+SL ++ R + V+VYD+ + SF W ++ + + +++GNKTD+
Sbjct: 78 FRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTDL 133
Query: 130 DGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 134 --ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 174
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/169 (39%), Positives = 99/169 (58%), Gaps = 15/169 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++ LG+ VGKTSL+ +++ F N Y+ATIG DFL+K + EDR LQ+WDTAG E
Sbjct: 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF+SL ++ R + V+VYD+ + SF W ++ + + +++GNKTD
Sbjct: 74 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG----SDVIIMLVGNKTD 129
Query: 129 VDGGNSRVVS----EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
+ + R VS E+KAK N+ + ETSAK G+NV+ F +A
Sbjct: 130 L--ADKRQVSIEEGERKAKEL-----NVMFIETSAKAGYNVKQLFRRVA 171
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQIWDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 62
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYD+ ++F N+ W + A+ + +++GNK+
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D + +RVV+ + +A G IP+ E+SAK NV F +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 117 bits (292), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 100/167 (59%), Gaps = 8/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++++GDSGVGK+ L+ ++V KF+ + TIG DF K V + LQ+WDTAGQ
Sbjct: 3 IXKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQ 62
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ A+YRGA +LVYDV ++F N+ W + A+ + +++GNK+
Sbjct: 63 ERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKS 118
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D + +RVV+ + +A G IP+ E+SAK NV F +AK
Sbjct: 119 DXE---TRVVTADQGEALAKELG-IPFIESSAKNDDNVNEIFFTLAK 161
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 102/172 (59%), Gaps = 7/172 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K II+GD GVGK+ L++Q+ +KF TIG +F T+ ++ + LQIWDTAGQ
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 74
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YRGA ++VYD+ ++++L++W L A N +++GNK
Sbjct: 75 ERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 130
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
D++ R V+ ++AK + G + + E SAK G NVE AF AK +N
Sbjct: 131 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 179
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 102/177 (57%), Gaps = 7/177 (3%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M+ L K +++G++G GK+ L++Q++ +KF + TIG +F +K + + LQ
Sbjct: 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
IWDTAGQERF+S+ ++YRGA +LVYD+ ++++ L NW L A +N
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVI 118
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
++ GNK D+D R V+ +A + A + + + ETSA G NVE AF A+ L
Sbjct: 119 ILCGNKKDLDA--DREVTFLEASRF-AQENELMFLETSALTGENVEEAFVQCARKIL 172
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 114 bits (284), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 64/168 (38%), Positives = 98/168 (58%), Gaps = 8/168 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K+++LG++ VGK+S++ ++V+ F+ + TIGA FLT+ V + +IWDTAGQE
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF SL +YR A ++VYDV +SF +W +E QAS ++ ++GNK D
Sbjct: 64 RFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKID 119
Query: 129 V--DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+GG +V E+ K A + + +FETSAK G NV F I +
Sbjct: 120 XLQEGGERKVAREEGEK--LAEEKGLLFFETSAKTGENVNDVFLGIGE 165
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 113 bits (282), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 99/174 (56%), Gaps = 7/174 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LGD G GK+SL+ ++V +F ++TIGA F ++ + D +IWDTAGQER
Sbjct: 14 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ SL +YRGA ++V+DV SF+ W +E Q +P N + GNK+D+
Sbjct: 74 YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP----NMVMALAGNKSDL 129
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
++R V+ + A+ + G + + ETSAK NV+ F IA+ + +P E
Sbjct: 130 L--DARKVTAEDAQTYAQENG-LFFMETSAKTATNVKEIFYEIARRLPRVQPTE 180
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 113 bits (282), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 98/163 (60%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++I+G+S VGKTS + +Y + F+ + +T+G DF K + D+ LQIWDTAGQ
Sbjct: 5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +L+YD+ +SF+ + +W Q +N +++GNK
Sbjct: 65 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKC 120
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D++ + RVVS ++ + G +FE SAK+ NV+ FE
Sbjct: 121 DME--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 160
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 112 bits (281), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 56/170 (32%), Positives = 100/170 (58%), Gaps = 8/170 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K++++G+ VGK+S++ +Y F+ YK TIG DFL +++Q D L +WDTAGQE
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
F ++ A+YRGA CVLV+ +SF+ +++WRE+ + + + P ++ NK D
Sbjct: 66 EFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-----DIPTALVQNKID 120
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ + + ++A+ A + + ++ TS KE NV F+ +A+ L+
Sbjct: 121 L--LDDSCIKNEEAEG-LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 167
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/172 (36%), Positives = 101/172 (58%), Gaps = 7/172 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K II+GD GVGK+ L++Q+ +KF TIG +F T+ ++ + LQIWDTAGQ
Sbjct: 30 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ 89
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
RF+++ ++YRGA ++VYD+ ++++L++W L A N +++GNK
Sbjct: 90 GRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW----LTDARNLTNPNTVIILIGNKA 145
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
D++ R V+ ++AK + G + + E SAK G NVE AF AK +N
Sbjct: 146 DLEA--QRDVTYEEAKQFAEENG-LLFLEASAKTGENVEDAFLEAAKKIYQN 194
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 95/162 (58%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++G++GVGKT L+ ++ F ATIG DF+ K V+ LQIWDTAGQ
Sbjct: 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ 85
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+S+ ++YR A+ +L YD+ +SF L W E AS V++GNK
Sbjct: 86 ERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKI 141
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D+ R VS+++A+ + ++ ++ Y ETSAKE NVE F
Sbjct: 142 DL--AERREVSQQRAEEFSEAQ-DMYYLETSAKESDNVEKLF 180
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/170 (36%), Positives = 100/170 (58%), Gaps = 7/170 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G++G GK+ L++Q++ +KF + TIG +F +K + + LQIWDTAGQ
Sbjct: 11 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ 70
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+S+ ++YRGA +LVYD+ ++++ L NW L A +N ++ GNK
Sbjct: 71 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 126
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+D R V+ +A + A + + + ETSA G +VE AF A+ L
Sbjct: 127 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 173
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 104/162 (64%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GDSGVGK++L++++ +F+ + K+TIG +F T+ ++ E++ QIWDTAG
Sbjct: 10 LFKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGL 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA ++VYD++ S++N N+W L + + +N ++GNK+
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW----LTELRENADDNVAVGLIGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D+ + R V +AK + A + + + ETSA NV+ AF
Sbjct: 126 DL--AHLRAVPTDEAKNF-AMENQMLFTETSALNSDNVDKAF 164
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 60/163 (36%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++I+G+S VGKTS + +Y + F+ + +T+G DF K V ++ LQIWDTAGQ
Sbjct: 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQ 82
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +L+YD+ +SF+ + +W Q +N +++GNK
Sbjct: 83 ERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW----ATQIKTYSWDNAQVILVGNKC 138
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D++ RVV +K + A + +FE SAKE +V AFE
Sbjct: 139 DME--EERVVPTEKGQL-LAEQLGFDFFEASAKENISVRQAFE 178
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 110 bits (274), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 63/170 (37%), Positives = 98/170 (57%), Gaps = 7/170 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G +G GK+ L++Q++ KF TIG +F ++ V + LQIWDTAGQ
Sbjct: 25 LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+S+ ++YRGA +LVYD+ +++++L W + ASP N ++ GNK
Sbjct: 85 ERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP----NIVVILCGNKK 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+D R V+ +A + A + + + ETSA G NVE AF A+ L
Sbjct: 141 DLD--PEREVTFLEASRF-AQENELMFLETSALTGENVEEAFLKCARTIL 187
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 110 bits (274), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/165 (36%), Positives = 95/165 (57%), Gaps = 7/165 (4%)
Query: 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
R KV++LG+ VGKTSL+ +Y KF++++ T+GA FLTK++ + L IWDT
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDT 62
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
AGQERF +LG +YR ++ +LVYD+ SF + NW +E ++G
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
NK D++ R VS ++A+++ S G ++ TSAK+ +E F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV+++G+SGVGKT+L++++ +FS+ + TIG +F T+ V QIWDTAG
Sbjct: 10 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 69
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LV+D+ +++ + W +E A + +++GNK+
Sbjct: 70 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 125
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D+ +R V ++A+ + + G + + ETSA + NVE AFE + K
Sbjct: 126 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 169
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 109 bits (273), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 99/170 (58%), Gaps = 7/170 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K +++G++G GK+ L++Q++ +KF + TIG +F +K + + LQIWDTAG
Sbjct: 8 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGL 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+S+ ++YRGA +LVYD+ ++++ L NW L A +N ++ GNK
Sbjct: 68 ERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW----LTDARMLASQNIVIILCGNKK 123
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+D R V+ +A + A + + + ETSA G +VE AF A+ L
Sbjct: 124 DLDA--DREVTFLEASRF-AQENELMFLETSALTGEDVEEAFVQCARKIL 170
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 109 bits (272), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/167 (34%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV+++G+SGVGKT+L++++ +FS+ + TIG +F T+ V QIWDTAG
Sbjct: 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGL 84
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +LV+D+ +++ + W +E A + +++GNK+
Sbjct: 85 ERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT----IVVMLVGNKS 140
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
D+ +R V ++A+ + + G + + ETSA + NVE AFE + K
Sbjct: 141 DLS--QAREVPTEEARMFAENNG-LLFLETSALDSTNVELAFETVLK 184
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 7/164 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG+ VGKTS++ ++ F N Y++TIG DFL+K + ++ LQ+WDTAGQER
Sbjct: 3 KLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQER 62
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+SL ++ R + ++VYD+ +SF+N W ++ L + ++ ++GNKTD+
Sbjct: 63 FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG----KDVIIALVGNKTDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
G+ R V+ ++ A + N + ETSAK G N++ F+ A
Sbjct: 119 --GDLRKVTYEEGXQ-KAQEYNTXFHETSAKAGHNIKVLFKKTA 159
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 95/163 (58%), Gaps = 7/163 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ K++++G+S VGKTS + +Y + F+ + +T+G DF K V D+ LQIWDTAGQ
Sbjct: 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQ 81
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ER++++ A+YRGA +L+YD+ +SF + +W Q +N +++GNK
Sbjct: 82 ERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW----ATQIKTYSWDNAQVILVGNKC 137
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D++ + RVV + + G +FE SAKE NV+ FE
Sbjct: 138 DLE--DERVVPAEDGRRLADDLG-FEFFEASAKENINVKQVFE 177
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++I+G+S VGKTS + +Y + F+ + +T+G DF K + D+ LQIWDTAG E
Sbjct: 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R++++ A+YRGA +L YD+ +SF+ + +W Q +N +++GNK D
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWS----TQIKTYSWDNAQVLLVGNKCD 124
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
+ + RVVS ++ + G +FE SAK+ NV+ FE
Sbjct: 125 XE--DERVVSSERGRQLADHLG-FEFFEASAKDNINVKQTFE 163
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 94/165 (56%), Gaps = 7/165 (4%)
Query: 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
R KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + L IWDT
Sbjct: 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 62
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
AGQERF +LG +YR ++ +LVYD+ SF + NW +E ++G
Sbjct: 63 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 118
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
NK D++ R VS ++A+++ S G ++ TSAK+ +E F
Sbjct: 119 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELF 160
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 61/175 (34%), Positives = 98/175 (56%), Gaps = 7/175 (4%)
Query: 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
R KV++LG+ VGKTSL+ +Y KF++++ T+ A FLTK++ + L IWDT
Sbjct: 17 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDT 76
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
AGQERF +LG +YR ++ +LVYD+ SF + NW +E ++G
Sbjct: 77 AGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKEL----RKMLGNEICLCIVG 132
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179
NK D++ R VS ++A+++ S G ++ TSAK+ +E F + K ++
Sbjct: 133 NKIDLE--KERHVSIQEAESYAESVG-AKHYHTSAKQNKGIEELFLDLCKRMIET 184
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 105 bits (263), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 97/166 (58%), Gaps = 6/166 (3%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L K++++GD+ VGKT ++ ++ FS + +TIG DF K ++ + + LQIWDTAGQ
Sbjct: 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ 88
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
ERF+++ ++YR A+ +L YD+ SF ++ +W E+ A N +++GNK+
Sbjct: 89 ERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKS 144
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173
D+ R VS +A++ + ETSAK+ NVE AF +A
Sbjct: 145 DLS--ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVA 188
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 105 bits (262), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/170 (37%), Positives = 96/170 (56%), Gaps = 7/170 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK++I+G+SGVGK+SL+ ++ + F + ATIG DF K + + L IWDTAGQE
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
RF++L ++YRGA +LVYDV +F L+NW E + +D N ++GNK
Sbjct: 76 RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVN---XLVGNK-- 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+D N V + K A K + + E SAK V+ AFE + + ++
Sbjct: 131 IDKENREVDRNEGLK--FARKHSXLFIEASAKTCDGVQCAFEELVEKIIQ 178
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 102 bits (255), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/174 (36%), Positives = 95/174 (54%), Gaps = 10/174 (5%)
Query: 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT 64
R + K+I++GDS VGKT L ++ +F ++ +ATIG DF + V + +Q+WDT
Sbjct: 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT 76
Query: 65 AGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123
AGQERF +S+ +YR V VYD+ M SF +L W EE +D P +++
Sbjct: 77 AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAND---IPRILV 133
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
GNK D+ V A+ + A ++P FETSAK + +VEA F +A
Sbjct: 134 GNKCDLRSAIQ--VPTDLAQKF-ADTHSMPLFETSAKNPNDNDHVEAIFMTLAH 184
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 101 bits (252), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 79/119 (66%), Gaps = 4/119 (3%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
++++GDSGVGK+ L+ ++ + ++ Y +TIG DF + ++ + + LQIWDTAGQERF
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+++ ++YRGA ++VYDV +SF+N+ W +E AS EN +++GNK D+
Sbjct: 61 RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDL 115
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 99.4 bits (246), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 93/178 (52%), Gaps = 10/178 (5%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
+ R + K+I++GDS VGKT L ++ +F ++ +ATIG DF + V + +Q
Sbjct: 22 LPPARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQ 81
Query: 61 IWDTAGQERF-QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
+WDTAGQERF +S+ +YR V VYD SF +L W EE +D P
Sbjct: 82 LWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLAND---IP 138
Query: 120 FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK---EGFNVEAAFECIAK 174
+++GNK D+ V A+ + A + P FETSAK + +VEA F +A
Sbjct: 139 RILVGNKCDLRSAIQ--VPTDLAQKF-ADTHSXPLFETSAKNPNDNDHVEAIFXTLAH 193
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 95/173 (54%), Gaps = 9/173 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++ GD+ VGK+S + + +F AT+G DF K + + LQ+WDTAGQER
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQER 89
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F+S+ +++R AD +L+YDV KSF N+ W + +I+ + E P +++GNK D+
Sbjct: 90 FRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVD--MIEDAAH--ETVPIMLVGNKADI 145
Query: 130 DGGNS----RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ + V + + G + + ETSAK+G N+ A +A+ K
Sbjct: 146 RDTAATEGQKCVPGHFGEKLAMTYGAL-FCETSAKDGSNIVEAVLHLAREVKK 197
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 87/171 (50%), Gaps = 7/171 (4%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQ 67
LK+++LGD GKTSL + F QYK TIG DF + + L TLQIWD GQ
Sbjct: 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQ 66
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL-GNK 126
+ + GA +LVYD+ +SF+NL +W +++ + E P V L GNK
Sbjct: 67 TIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYT--VVKKVSEESETQPLVALVGNK 124
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D++ + R + +K +C G +F SAK G +V F+ +A L
Sbjct: 125 IDLE--HMRTIKPEKHLRFCQENGFSSHF-VSAKTGDSVFLCFQKVAAEIL 172
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 96/171 (56%), Gaps = 8/171 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++++RE+ D E+ P V++GNK+D+
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
SR V K+A+ S G IP+ ETSAK V+ AF + + K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 65
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
WDTAG E+F L +Y A C ++++DV ++ N+ NW + L++ EN P V
Sbjct: 66 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 120
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ GNK D V E+K KA + K N+ Y++ SAK +N E F +A+ L
Sbjct: 121 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 171
Query: 179 NEPQEE 184
PQ E
Sbjct: 172 GNPQLE 177
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 5 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 57
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
WDTAG E+F L +Y A C ++++DV ++ N+ NW + L++ EN P V
Sbjct: 58 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ GNK D V E+K KA + K N+ Y++ SAK +N E F +A+ L
Sbjct: 113 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 163
Query: 179 NEPQEE 184
PQ E
Sbjct: 164 GNPQLE 169
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 98/186 (52%), Gaps = 31/186 (16%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD-----FLTK--EVQFEDRLFTLQI 61
K++++GD G GKT+ + +++ +F +Y ATIG + F T E++F+ +
Sbjct: 6 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD-------V 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
WDTAG E+F L +Y A C ++++DV ++ N+ NW + L++ EN P V
Sbjct: 59 WDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIV 113
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALK 178
+ GNK D V E+K KA + K N+ Y++ SAK +N E F +A+ L
Sbjct: 114 LCGNKVD--------VKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LA 164
Query: 179 NEPQEE 184
PQ E
Sbjct: 165 GNPQLE 170
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 95/171 (55%), Gaps = 8/171 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 64
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++++RE+ D E+ P V++GNK D+
Sbjct: 65 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
SR V K+A+ S G IP+ ETSAK V+ AF + + K++
Sbjct: 122 ---PSRTVDTKQAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++ +RE+ D ++ P V++GNK D+
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
G R V ++A+ S G IPY ETSAK VE AF + +
Sbjct: 121 AG---RTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 64 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 118
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 119 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 162
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 93.2 bits (230), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++ +DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++ +RE+ D ++ P V++GNK D+
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+R V ++A+ S G IPY ETSAK VE AF + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++ +RE+ D ++ P V++GNK D+
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+R V ++A+ S G IPY ETSAK VE AF + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 88/172 (51%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
++ L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 91/165 (55%), Gaps = 8/165 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++G GVGK++L Q + F ++Y TI D K+V + L I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEE 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ ++ + R + + V+ +N KSF++++ +RE+ D ++ P V++GNK D+
Sbjct: 64 YSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+R V ++A+ S G IPY ETSAK VE AF + +
Sbjct: 121 ---AARTVESRQAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y T+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 91.7 bits (226), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y T+G + +WDTAGQE
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 70
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 71 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 125
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 126 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 169
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 7 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 67 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 121
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
+ ++K KA K N+ Y++ SAK +N E F +A+ L +P E
Sbjct: 122 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LIGDPNLE 171
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 90/179 (50%), Gaps = 17/179 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ +F +Y AT+G + +WDTAG E
Sbjct: 13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 73 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 127
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQEE 184
+ ++K KA K N+ Y++ SAK +N E F +A+ L +P E
Sbjct: 128 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK-LIGDPNLE 177
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 16/172 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
K++++GD G GKT+ + +++ + +Y AT+G + +WDTAGQE
Sbjct: 16 FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+F L +Y A C ++++DV ++ N+ NW + L++ EN P V+ GNK D
Sbjct: 76 KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRD-LVRVC----ENIPIVLCGNKVD 130
Query: 129 VDGGNSRVVSEKKAKAWC---ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ ++K KA K N+ Y++ SAK +N E F +A+ +
Sbjct: 131 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 174
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 14/164 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F ++Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F ++ + + LVY + +F++L + RE+ L D E+ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
+ + RVV +++ A+ WC N + E+SAK NV F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 90.5 bits (223), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 88/174 (50%), Gaps = 12/174 (6%)
Query: 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---RLFTLQ 60
RR + K+ ++GD GVGKT+ +N+ ++ +F Y AT+GA + V F D +
Sbjct: 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGA--VNHPVTFLDDQGNVIKFN 64
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE+ L +Y GA +L +DV + NL W +EF QA + P
Sbjct: 65 VWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEF--QAVVGNEA--PI 120
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
VV NK D+ N + +S+K K N YFE SAK N F +A+
Sbjct: 121 VVCANKIDIK--NRQKISKKLVMEVLKGK-NYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDCQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F ++ + + LVY + +F++L + RE+ L D E+ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTEDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKK----AKAWCASKGNIPYFETSAKEGFNVEAAF 169
+ + RVV +++ A+ WC N + E+SAK NV F
Sbjct: 121 E--DERVVGKEQGQNLARQWC----NCAFLESSAKSKINVNEIF 158
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAGQ
Sbjct: 14 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 72
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + + V+ + M+SF ++RE+ L + EN PF+++GNK+
Sbjct: 73 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 129
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D++ + R VS ++AK A + N+ Y ETSAK NV+ F
Sbjct: 130 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 168
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAGQ
Sbjct: 18 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 76
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + + V+ + M+SF ++RE+ L + EN PF+++GNK+
Sbjct: 77 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 133
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D++ + R VS ++AK A + N+ Y ETSAK NV+ F
Sbjct: 134 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAGQ
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + + V+ + M+SF ++RE+ L + EN PF+++GNK+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D++ + R VS ++AK A + N+ Y ETSAK NV+ F
Sbjct: 122 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 160
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 94/162 (58%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQ 62
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + + V+ + M+SF ++RE+ L + EN PF+++GNK+
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D++ + R VS ++AK A + N+ Y ETSAK NV+ F
Sbjct: 120 DLE--DKRQVSVEEAKNR-ADQWNVNYVETSAKTRANVDKVF 158
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F ++ + + LVY + +F++L + RE+ L D ++ P +++GNK D+
Sbjct: 64 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 120
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
+ + RVV +++ + N + E+SAK NV F
Sbjct: 121 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 158
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 88/182 (48%), Gaps = 17/182 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+KV+++GD G GKTSL+ + + F Y T+ ++ +Q + + L IWDTAGQ+
Sbjct: 35 VKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVN-LQVKGKPVHLHIWDTAGQD 93
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127
+ L FY A +L +DV SFDN+ N W E + P +V+G KT
Sbjct: 94 DYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-----KKVPIIVVGCKT 148
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ S V V+ + + S G + Y E SA+ NV A F+ A+ AL
Sbjct: 149 DLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVAL 208
Query: 178 KN 179
+
Sbjct: 209 SS 210
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+++LG GVGK++L Q+V F +Y TI D K+V+ + + L+I DTAG E+
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F ++ + + LVY + +F++L + RE+ L D ++ P +++GNK D+
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL---RVKDTDDVPMILVGNKCDL 122
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
+ + RVV +++ + N + E+SAK NV F
Sbjct: 123 E--DERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 56/162 (34%), Positives = 93/162 (57%), Gaps = 7/162 (4%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 6 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + + V+ + M+SF ++RE+ L + EN PF+++GNK+
Sbjct: 65 EDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL---RVKEDENVPFLLVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169
D++ + R VS ++AK A + N+ Y ETSAK NV+ F
Sbjct: 122 DLE--DKRQVSVEEAKNR-AEQWNVNYVETSAKTRANVDKVF 160
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 83.2 bits (204), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 14/185 (7%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+K + +GD VGKT ++ Y + KF Y T+ +F + V + ++ L +WDTAGQ
Sbjct: 9 FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQ 67
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNK 126
E + L YRGAD VL + + S++N L W E L + +P N P V++G K
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPE-LRRFAP----NVPIVLVGTK 122
Query: 127 TDV--DGG----NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
D+ D G ++ V++ + + G Y E S+K NV+A F+ K L+
Sbjct: 123 LDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQ-P 181
Query: 181 PQEEE 185
P+ +E
Sbjct: 182 PRRKE 186
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++++RE+ D E+ P V++GNK+D+ SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+A+ S G IP+ ETSAK V+ AF + + K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 87/160 (54%), Gaps = 8/160 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 75
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++++RE+ D E+ P V++GNK+D+ SR V K
Sbjct: 76 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKSDL---PSRTVDTK 129
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+A+ S G IP+ ETSAK V+ AF + + K++
Sbjct: 130 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 168
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK+D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 81
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 82 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 136 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 168
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/160 (31%), Positives = 85/160 (53%), Gaps = 8/160 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 92
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++++RE+ D E+ P V++GNK D+ SR V K
Sbjct: 93 GEGFLCVFAINNTKSFEDIHHYREQI---KRVKDSEDVPMVLVGNKCDL---PSRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
+A+ S G IP+ ETSAK V+ AF + + K++
Sbjct: 147 QAQDLARSYG-IPFIETSAKTRQGVDDAFYTLVREIRKHK 185
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 79.7 bits (195), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 3 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 61
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + +LV+ + +SF +RE+ L + D P +V+GNK+
Sbjct: 62 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 119
Query: 128 DVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
D++ V E ++KA W + Y ETSAK NV+ F
Sbjct: 120 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 158
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 10/164 (6%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L KVI++G GVGK++L Q++ +F Y+ T AD K+V + + I DTAG
Sbjct: 7 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGL 65
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
E + ++ ++R + +LV+ + +SF +RE+ L + D P +V+GNK+
Sbjct: 66 EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEED--KIPLLVVGNKS 123
Query: 128 DVDGGNSRVVSEKKAKA--WCASKGNIPYFETSAKEGFNVEAAF 169
D++ V E ++KA W + Y ETSAK NV+ F
Sbjct: 124 DLEERRQVPVEEARSKAEEW-----GVQYVETSAKTRANVDKVF 162
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI + K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 79.0 bits (193), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K +L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GN+ D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNRCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+ + F + Y TI +L K + +++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
D ++VY V SF++++ + + L D E+FP +++ NK VD + R V+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
+ K A+K NIPY ETSAK+ NV+ F + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F +Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y +I D K+V + L I DTAGQE + ++ + R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 80
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 81 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 135 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 167
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+ + F +Y TI +L K + +++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
D ++VY V SF++++ + + L D E+FP +++ NK VD + R V+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
+ K A+K NIPY ETSAK+ NV+ F + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y +I D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/207 (26%), Positives = 91/207 (43%), Gaps = 47/207 (22%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ------------------ 51
K ++LG+S VGK+S++ + F TIGA F T V
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 52 -----------------FEDRLFTLQ--IWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92
+ + L ++ IWDTAGQER+ S+ +YRGA C ++V+D++
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 93 MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152
+ D W + I + N+ +++ NK D + ++ +K A N+
Sbjct: 129 SNTLDRAKTWVNQLKISS------NYIIILVANKIDKNKFQVDILEVQKY----AQDNNL 178
Query: 153 PYFETSAKEGFNVEAAFECIAKNALKN 179
+ +TSAK G N++ F +A+ KN
Sbjct: 179 LFIQTSAKTGTNIKNIFYMLAEEIYKN 205
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DT GQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 84/155 (54%), Gaps = 8/155 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+ + F ++Y TI D K + +++ L + DTAGQE F ++ + R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTI-EDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 89
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
D ++VY V SF++++ + + L D E+FP +++ NK VD + R V+
Sbjct: 90 GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 144
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
+ K A+K NIPY ETSAK+ NV+ F + +
Sbjct: 145 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG+E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F +++ TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTA QE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKXDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 77.8 bits (190), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 8/155 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+ + F Y TI +L K + +++ L + DTAGQE F ++ + R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRT 84
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
D ++VY V SF++++ + + L D E+FP +++ NK VD + R V+
Sbjct: 85 GDGFLIVYSVTDKASFEHVDRFHQLIL---RVKDRESFPMILVANK--VDLMHLRKVTRD 139
Query: 141 KAKAWCASKGNIPYFETSAKE-GFNVEAAFECIAK 174
+ K A+K NIPY ETSAK+ NV+ F + +
Sbjct: 140 QGKE-MATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 79
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 80 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 133
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 134 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 84/162 (51%), Gaps = 7/162 (4%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q++ F Y TI D TK+ +DR L I DTAGQE F ++ + R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTI-EDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ +LV+ V SF+ + ++ + L D + FP +++GNK D+D + R V+++
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQIL---RVKDRDEFPMILIGNKADLD--HQRQVTQE 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182
+ + A + + Y E SAK NV+ AF + + K + Q
Sbjct: 132 EGQ-QLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKFQEQ 172
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q++ F + Y TI D TK + L I DTAGQE F ++ + R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+LV+ +N +SF+ + + L D ++FP V++GNK D++ + R V
Sbjct: 81 GHGFLLVFAINDRQSFNEVGKLFTQIL---RVKDRDDFPVVLVGNKADLE--SQRQVPRS 135
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183
+A A+ AS ++ YFE SAK NV+ AFE + + K + QE
Sbjct: 136 EASAFGASH-HVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQE 177
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAGQE + ++ + R
Sbjct: 34 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 92
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF ++N +RE+ D ++ P V++GNK D+ +R V K
Sbjct: 93 GEGFLCVFAINNSKSFADINLYREQI---KRVKDSDDVPMVLVGNKCDL---PTRTVDTK 146
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A S G IP+ ETSAK VE AF + +
Sbjct: 147 QAHELAKSYG-IPFIETSAKTRQGVEDAFYTLVR 179
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++ TI D K+V + L I DTAGQE + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDECDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK+D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKSDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 77.0 bits (188), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 87/174 (50%), Gaps = 15/174 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK++++GD VGKT L+ + + Y T+ +F + +++++ F L +WDTAGQE
Sbjct: 24 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 82
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEF--LIQASPSDPENFPFVVLGN 125
+ L Y +D +L + VN SFDN++ W E I + + V++G
Sbjct: 83 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-------VLVGL 135
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
K D+ S V++++ C G + Y E S AK G N E + +CI N
Sbjct: 136 KVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 189
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 85/172 (49%), Gaps = 11/172 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK++++GD VGKT L+ + + Y T+ +F + +++++ F L +WDTAGQE
Sbjct: 23 LKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYKNEEFILHLWDTAGQE 81
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y +D +L + VN SFDN++ W E + V++G K
Sbjct: 82 EYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-----VLVGLKV 136
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETS--AKEGFN--VEAAFECIAKN 175
D+ S V++++ C G + Y E S AK G N E + +CI N
Sbjct: 137 DLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN 188
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 49/154 (31%), Positives = 81/154 (52%), Gaps = 8/154 (5%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q + F ++Y TI D K+V + L I DTAG E + ++ + R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRT 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+ + V+ +N KSF++++ +RE+ D ++ P V++GNK D+ +R V +
Sbjct: 75 GEGFLCVFAINNTKSFEDIHQYREQI---KRVKDSDDVPMVLVGNKCDL---AARTVESR 128
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
+A+ S G IPY ETSAK VE AF + +
Sbjct: 129 QAQDLARSYG-IPYIETSAKTRQGVEDAFYTLVR 161
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M++ R +K + +GD VGKT ++ Y F Y T+ +F + V + L
Sbjct: 1 MSTAR--FIKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNF-SANVVVDGSTVNLG 57
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
+WDTAGQE + L YRGAD +L + + S++N++ W E L +P P
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPE-LKHYAP----GIP 112
Query: 120 FVVLGNKTDV--------DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
V++G K D+ D + ++ + + G + Y E S+K NV+A F+
Sbjct: 113 IVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDT 172
Query: 172 IAKNALK 178
+ AL+
Sbjct: 173 AIRVALR 179
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KV+ILG VGKTSL +Q+V +FS Y T+ + +K V F L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDE 84
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L +F G VLVY V + SF + + ++ P V++GNK D+
Sbjct: 85 YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL---HEGHGKTRVPVVLVGNKADL 141
Query: 130 DGGN--SRVVSEKKAKAWCASKGNIPYFETSAKE 161
V +K A++W A+ + E+SA+E
Sbjct: 142 SPEREVQAVEGKKLAESWGAT-----FMESSARE 170
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 87/187 (46%), Gaps = 17/187 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M++ R +K + +GD VGKT ++ Y + F Y T+ +F + V + L
Sbjct: 1 MSASR--FIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNF-SANVVVDGNTVNLG 57
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFP 119
+WDTAGQE + L YRGAD +L + + S++N+ W E L +P P
Sbjct: 58 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPE-LRHYAP----GVP 112
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
+++G K D +D + ++ + + G+ Y E S+K NV+A F+
Sbjct: 113 IILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDA 172
Query: 172 IAKNALK 178
K L+
Sbjct: 173 AIKVVLQ 179
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 7/171 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + Y TI F TK + + + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ + + +LVY V +KSF+ + + L P +++GNK D+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180
RV+S ++ KA A N + E+SAKE F I A K E
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKENQTAVDVFRRIILEAEKLE 171
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + Y TI F TK + + + LQ+ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 61
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ + + +LVY V +KSF+ + + L P +++GNK D+
Sbjct: 62 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 118
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
RV+S ++ KA A N + E+SAKE
Sbjct: 119 H--MERVISYEEGKA-LAESWNAAFLESSAKE 147
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + Y TI F TK + + + LQ+ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 66
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ + + +LVY V +KSF+ + + L P +++GNK D+
Sbjct: 67 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 123
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
RV+S ++ KA A N + E+SAKE
Sbjct: 124 H--MERVISYEEGKA-LAESWNAAFLESSAKE 152
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 91/175 (52%), Gaps = 8/175 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDRLFTLQIW--DTA 65
KV ++G++ VGK++L++ + ++ KF Y T G + + V D +++++ DTA
Sbjct: 22 KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
G + ++ ++ G +LV+DV+ M+SF++ W E L A P V++ N
Sbjct: 82 GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAVLVAN 140
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGFNVEAAFECIAKNALKN 179
KTD+ +V + A+ W A+ + +F+ SA G + +A F IA +N
Sbjct: 141 KTDLPPQRHQVRLD-MAQDW-ATTNTLDFFDVSANPPGKDADAPFLSIATTFYRN 193
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 68.9 bits (167), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 17/187 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M++ R +K + +GD VGKT L+ Y + F Y T+ +F + V L
Sbjct: 3 MSASR--FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-SANVVVNGATVNLG 59
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFP 119
+WDTAGQE + L YRGAD +L + + S++N++ W E L +P P
Sbjct: 60 LWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPE-LKHYAP----GVP 114
Query: 120 FVVLGNKTD--------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171
V++G K D +D + ++ + + G Y E S+K NV+ F+
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDA 174
Query: 172 IAKNALK 178
+ L+
Sbjct: 175 AIRVVLQ 181
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 21 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFXP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + + +G Y E SAK V FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
+ L+
Sbjct: 193 MATRAGLQ 200
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 3 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 175 MATRAALQ 182
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 173 MATRAALQ 180
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 2 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 174 MATRAALQ 181
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 3 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 175 MATRAALQ 182
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 4 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 59
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 60 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 115
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 116 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 176 MATRAALQ 183
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 67.4 bits (163), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 2 MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 57
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 58 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 113
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 114 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 174 MATRAALQ 181
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 3 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 58
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 59 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 115 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 175 MATRAALQ 182
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
++LK +++GD VGKT L+ Y N F +Y T+ D V + + L ++DTAG
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAG 75
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
QE + L Y D ++ + V SF N+ +EE++ + P N PF+++G +
Sbjct: 76 QEDYDRLRPLSYPMTDVFLICFSVVNPASFQNV---KEEWVPELKEYAP-NVPFLLIGTQ 131
Query: 127 TDV--DGGNSRVVSEKKAKAWCASKGN 151
D+ D +++ K K C +G
Sbjct: 132 IDLRDDPKTLARLNDMKEKPICVEQGQ 158
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 67.0 bits (162), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 21 MAAIRK---KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 76
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 77 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 132
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + + +G Y E SAK V FE
Sbjct: 133 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
Query: 171 CIAKNALK 178
+ L+
Sbjct: 193 MATRAGLQ 200
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +V+ + R L +WDTAGQE
Sbjct: 12 KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVA-DVEVDGRRVELALWDTAGQED 70
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y ++ ++ + +++ S +N+ W E L + P +++G K D
Sbjct: 71 YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFC-----QGVPIILVGCKVD 125
Query: 129 VDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ + V+ ++ ++ G Y+E SAK G+ V FE + +L
Sbjct: 126 LRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATRASL 184
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 77/161 (47%), Gaps = 6/161 (3%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+V + G GVGK+SL+ ++V F Y T+ D + + + + TLQI DT G +
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSHQ 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
F ++ +LVY + +S + L E+ I D E+ P +++GNK
Sbjct: 64 FPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQ--ICEIKGDVESIPIMLVGNK--C 119
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D SR V +A+A A + ETSAK NV+ F+
Sbjct: 120 DESPSREVQSSEAEAL-ARTWKCAFMETSAKLNHNVKELFQ 159
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 11 KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 69
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L Y D ++ + ++ S D+L N E++ + P N P +++GNK D+
Sbjct: 70 YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 125
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
D R +++ K + +G Y E SAK V FE + AL+
Sbjct: 126 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 184
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 76/152 (50%), Gaps = 7/152 (4%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K+ ILG VGK+SL Q+V +F + TI F TK + + + LQ+ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITVNGQEYHLQLVDTAGQDE 64
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ + + +LVY V +KSF+ + + L P +++GNK D+
Sbjct: 65 YSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV---QIPIMLVGNKKDL 121
Query: 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161
RV+S ++ KA A N + E+SAKE
Sbjct: 122 H--MERVISYEEGKA-LAESWNAAFLESSAKE 150
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ + +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRARPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D +R +++ K + ++G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 173 MATRAALQ 180
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 173 MATRAALQ 180
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 173 MATRAALQ 180
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + +G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
Query: 171 CIAKNALK 178
+ AL+
Sbjct: 173 MATRAALQ 180
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 89/188 (47%), Gaps = 18/188 (9%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
MA+ R+ K++I+GD GKT L+ +F Y T+ +++ +++ + + L
Sbjct: 1 MAAIRK---KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIA-DIEVDGKQVELA 56
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+WDTAGQE + L Y D ++ + ++ S D+L N E++ + P N P
Sbjct: 57 LWDTAGQEDYDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPI 112
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFE 170
+++GNK D+ D R +++ K + + +G Y E SAK V FE
Sbjct: 113 ILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
Query: 171 CIAKNALK 178
+ L+
Sbjct: 173 MATRAGLQ 180
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L Y D ++ + ++ S D+L N E++ + P N P +++GNK D+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
D R +++ K + +G Y E SAK V FE + AL+
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 178
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 64.3 bits (155), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 83/178 (46%), Gaps = 15/178 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 5 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 63
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L Y D ++ + ++ S D+L N E++ + P N P +++GNK D+
Sbjct: 64 YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 119
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNAL 177
D R +++ K + +G Y E SAK V FE + AL
Sbjct: 120 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 177
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 86/158 (54%), Gaps = 16/158 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K+ I G +GVGK++L+ +++ ++F +Y T+ + + + +D + +++I DTAGQE
Sbjct: 29 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQE 87
Query: 69 -RFQSLGVAFYRGADCCVLVYDVNVMKSFDN---LNNWREEFLIQASPSDPENFPFVVLG 124
Q G R + VLVYD+ SF+ L N +E P+N +++G
Sbjct: 88 DTIQREG--HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI------KKPKNVTLILVG 139
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162
NK D+D +SR VS ++ + A++ ++E SA G
Sbjct: 140 NKADLD--HSRQVSTEEGEKL-ATELACAFYECSACTG 174
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 17/191 (8%)
Query: 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
S+ +K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +
Sbjct: 1 GSKLMQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGL 59
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPF 120
WDTAGQE + L Y D ++ + + SF+N+ W E N P
Sbjct: 60 WDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPI 114
Query: 121 VVLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
+++G K D+ D + EKK A G + Y E SA ++ F+
Sbjct: 115 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 174
Query: 171 CIAKNALKNEP 181
+ L P
Sbjct: 175 EAIRAVLCPPP 185
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3
Length = 184
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LKV I+G+ GK++L+++Y+ + Q ++ G F KE+ + + + L I D G
Sbjct: 21 LKVGIVGNLSSGKSALVHRYLTGTYV-QEESPEGGRF-KKEIVVDGQSYLLLIRDEGGPP 78
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
Q F D V V+ + SF + N+ FL S + P V++G +
Sbjct: 79 ELQ-----FAAWVDAVVFVFSLEDEISFQTVYNY---FLRLCSFRNASEVPMVLVGTQDA 130
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
+ N RV+ + +A+ Y+ET A G NVE F+ +A+ +
Sbjct: 131 ISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV 179
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K++L Q+V F +Y TI DF KE++ + L+I DTAG E+F S+ + +
Sbjct: 16 KSALTVQFVTGTFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+LVY + +SF ++ R++ + E P +++GNK D++ SE
Sbjct: 75 GQGFILVYSLVNQQSFQDIKPMRDQII---RVKRYEKVPVILVGNKVDLESEREVSSSEG 131
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
+A A + P+ ETSAK V+ F I +
Sbjct: 132 RA---LAEEWGCPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 63.2 bits (152), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 119
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 120 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 179
Query: 178 KNEP 181
P
Sbjct: 180 CPPP 183
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKTSL+ Y + +Y T D + V + R LQ+ DTAGQ+
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQD 79
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
F L Y D +L + V SF N++ W E + P +++G ++
Sbjct: 80 EFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKA-----PIILVGTQS 134
Query: 128 D----------VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D +D + V E+ AK Y E SA N++ F+
Sbjct: 135 DLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 62.8 bits (151), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 64 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 119
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 120 LRDDPSTI--EKLAK 132
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 73 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 128
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 129 LRDDPSTI--EKLAK 141
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 79/179 (44%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT L+ + +F Y T+ +++ +++ + + L +WDTAGQE
Sbjct: 27 KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQED 85
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L Y D ++ + V+ S D+L N E+++ + P N P +++ NK D+
Sbjct: 86 YDRLRPLSYPDTDVILMCFSVD---SPDSLENIPEKWVPEVKHFCP-NVPIILVANKKDL 141
Query: 130 DGGNS----------RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178
V +A Y E SAK V FE + AL+
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ 200
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y FS +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 73 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 127
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 128 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 180
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 66 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 121
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 122 LRDDPSTI--EKLAK 134
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VXIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 77/181 (42%), Gaps = 17/181 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 K 178
K
Sbjct: 178 K 178
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 64
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 65 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 120
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 121 LRDDPSTI--EKLAK 133
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 72/135 (53%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 83/188 (44%), Gaps = 17/188 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + S++N+ W E + PS P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK +G ++ Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEPQEEE 185
+P ++
Sbjct: 178 CPQPTRQQ 185
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 15/179 (8%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++I+GD GKT L+ +F Y T+ +++ +++ + + L +WDTAG E
Sbjct: 10 KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGLED 68
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L Y D ++ + ++ S D+L N E++ + P N P +++GNK D+
Sbjct: 69 YDRLRPLSYPDTDVILMCFSID---SPDSLENIPEKWTPEVKHFCP-NVPIILVGNKKDL 124
Query: 130 --DGGNSRVVSEKKAKAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALK 178
D R +++ K + +G Y E SAK V FE + AL+
Sbjct: 125 RNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAALQ 183
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 61.6 bits (148), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 170
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 81
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 82 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 136
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 189
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/173 (26%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ D + V + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL + DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLRDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y + ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y K ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGK L+ Y KF ++Y T+ ++ V +TL ++DTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 70 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 125
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 126 LRDDPSTI--EKLAK 138
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 60.1 bits (144), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 118
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 119 LRDDPSTI--EKLAK 131
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 7/135 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y KF ++Y T+ ++ V +TL ++DTAG E
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGLE 66
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ L Y D ++ + V SF+N+ +E+++ + + P+ PF+++G + D
Sbjct: 67 DYDRLRPLSYPQTDVFLVCFSVVSPSSFENV---KEKWVPEITHHCPKT-PFLLVGTQID 122
Query: 129 VDGGNSRVVSEKKAK 143
+ S + EK AK
Sbjct: 123 LRDDPSTI--EKLAK 135
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 60.1 bits (144), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 17/184 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 117
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177
D+ D + EKK A G + Y E SA ++ F+ + L
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL 177
Query: 178 KNEP 181
P
Sbjct: 178 CPPP 181
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E + P +++G K
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ + ++ + A G++ Y E SA ++ F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 62
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E + P +++G K
Sbjct: 63 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 117
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ + ++ + A G++ Y E SA ++ F+
Sbjct: 118 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 170
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 74/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQE 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E + P +++G K
Sbjct: 64 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----HTPILLVGTKL 118
Query: 128 DVDGGNSRV----------VSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ + ++ + A G++ Y E SA ++ F+
Sbjct: 119 DLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFD 171
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGK L+ Y F +Y T+ D + V + + L +WDTAGQE
Sbjct: 11 IKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 125 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 177
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 65
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 66 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 120
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 121 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 173
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG E
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLE 89
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + SF+N+ W E N P +++G K
Sbjct: 90 DYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKL 144
Query: 128 DV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 145 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 197
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + S++N+ W E + PS P +++G K
Sbjct: 69 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 123
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
D+ D + EKK +G ++ Y E SA ++ F+
Sbjct: 124 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 176
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
E + L Y D ++ + + SF ++ W E N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
E + L Y D ++ + + SF ++ W E N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAGQE
Sbjct: 11 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDSKPVNLGLWDTAGQE 69
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKT 127
+ L Y D ++ + + S++N+ W E + PS P +++G K
Sbjct: 70 DYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPE-VRHHCPST----PIILVGTKL 124
Query: 128 DV--DGGNSRVVSEKKAKAWCASKG--------NIPYFETSAKEGFNVEAAFE 170
D+ D + EKK +G ++ Y E SA ++ F+
Sbjct: 125 DLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFD 177
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 17/174 (9%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L+K +++GD VGKT L+ Y F +Y T+ ++ + V + + L +WDTAG
Sbjct: 155 LIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGL 213
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNK 126
E + L Y D ++ + + SF ++ W E N P +++G K
Sbjct: 214 EDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTK 268
Query: 127 TDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETSAKEGFNVEAAFE 170
D+ D + EKK A G + Y E SA ++ F+
Sbjct: 269 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 322
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 80/165 (48%), Gaps = 9/165 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L +V++LGD GVGKTSL + + ++ + ++ +G D + + + TL + DT
Sbjct: 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEA 62
Query: 68 ERFQS--LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
E+ + +G V+VY + SF++ + R + ++ P +++GN
Sbjct: 63 EKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQL---RRTHQADHVPIILVGN 119
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
K D+ R VS ++ +A CA + + ETSA NV FE
Sbjct: 120 KADL--ARCREVSVEEGRA-CAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 81/183 (44%), Gaps = 22/183 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
L++ +LGD+ GK+SL+++++ + S QYK KE+ + + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
+ AG + F AD + V+ + SF ++ + L
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
++G + + + RVV + +A+A CA Y+ET A G NV+ F+ +A+ +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
Q++
Sbjct: 173 QQQ 175
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 36/203 (17%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+K +++GD VGKT L+ Y F +Y T+ D + V + + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 69 RFQSLGVAFY--------------RG-----ADCCVLVYDVNVMKSFDNLN-NWREEFLI 108
+ L Y RG AD ++ + + SF+N+ W E
Sbjct: 65 DYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVRH 124
Query: 109 QASPSDPENFPFVVLGNKTDV--DGGNSRVVSEKKAK--------AWCASKGNIPYFETS 158
N P +++G K D+ D + EKK A G + Y E S
Sbjct: 125 HCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS 179
Query: 159 AKEGFNVEAAFECIAKNALKNEP 181
A ++ F+ + L P
Sbjct: 180 ALTQRGLKTVFDEAIRAVLCPPP 202
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
K+ I+G++G GKT+L+ Q K S+ AT+G D +Q D R L +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
AG+E F S F + VYD++ ++ D W +AS S P +++
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 116
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASK 149
G D VS++K + C SK
Sbjct: 117 GTHLD--------VSDEKQRKACXSK 134
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSN--QYKATIGADFLTKEVQFED---RLFTLQIWDT 64
K+ I+G++G GKT+L+ Q K S+ AT+G D +Q D R L +WD
Sbjct: 4 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 65 AGQERFQSLGVAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVL 123
AG+E F S F + VYD++ ++ D W +AS S P +++
Sbjct: 64 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSS-----PVILV 118
Query: 124 GNKTDVDGGNSRVVSEKKAKAWCASK 149
G D VS++K + C SK
Sbjct: 119 GTHLD--------VSDEKQRKACXSK 136
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 53.5 bits (127), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 21 KTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80
K+SL+ ++V F + Y TI D + + + + TLQI DT G +F ++
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTI-EDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140
+LV+ V +S + L + LI E+ P +++GNK D R V +
Sbjct: 80 GHAFILVFSVTSKQSLEELGPIYK--LIVQIKGSVEDIPVMLVGNKCD---ETQREVDTR 134
Query: 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
+A+A A + + ETSAK +NV+ F+
Sbjct: 135 EAQA-VAQEWKCAFMETSAKMNYNVKELFQ 163
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 83/180 (46%), Gaps = 13/180 (7%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
+V+++G+ GVGK++L N + S +G D + + + + L +W+
Sbjct: 39 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 98
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
G+ + L + D ++VY + SF+ + R + E+ P +++GN
Sbjct: 99 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 153
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQEE 184
K+D+ VSE +A CA + + ETSA NV+ FE I + L+ + +E+
Sbjct: 154 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKEK 210
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M + + K++++GDS GKT+L++ + F Y T+ ++ T + + + L
Sbjct: 16 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 74
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
+WDT+G + ++ Y +D ++ +D++ ++ D+ L W+ E + + P N
Sbjct: 75 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 129
Query: 120 FVVLGNKTDVDGGNSRVV 137
+++G K+D+ S +V
Sbjct: 130 MLLVGCKSDLRTDVSTLV 147
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 71/137 (51%), Gaps = 7/137 (5%)
Query: 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQI 61
S + + K++++GDS GKT+L++ + F Y T+ ++ T + + + L +
Sbjct: 1 GSNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSL 59
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPF 120
WDT+G + ++ Y +D ++ +D++ ++ D+ L W+ E + + P N
Sbjct: 60 WDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTKM 114
Query: 121 VVLGNKTDVDGGNSRVV 137
+++G K+D+ S +V
Sbjct: 115 LLVGCKSDLRTDVSTLV 131
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 13 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 71
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ ++ Y +D +L +D++ ++ D+ L WR E L PS +++G KTD
Sbjct: 72 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 126
Query: 129 V 129
+
Sbjct: 127 L 127
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 71/138 (51%), Gaps = 7/138 (5%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQ 60
M + + K++++GDS GKT+L++ + F Y T+ ++ T + + + L
Sbjct: 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELS 79
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFP 119
+WDT+G + ++ Y +D ++ +D++ ++ D+ L W+ E + + P N
Sbjct: 80 LWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGE-IQEFCP----NTK 134
Query: 120 FVVLGNKTDVDGGNSRVV 137
+++G K+D+ S +V
Sbjct: 135 MLLVGCKSDLRTDVSTLV 152
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 12/171 (7%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA-TIGADFLTKEVQFEDR---LFTLQIWDTA 65
+V+++G+ GVGK++L N + S +G D + + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
G+ + L + D ++VY + SF+ + R + E+ P +++GN
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
K+D+ VSE +A CA + + ETSA NV+ FE I +
Sbjct: 123 KSDLVRCREVSVSEGRA---CAVVFDCKFIETSAAVQHNVKELFEGIVRQV 170
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 12 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 70
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ ++ Y +D +L +D++ ++ D+ L WR E L PS +++G KTD
Sbjct: 71 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 125
Query: 129 V 129
+
Sbjct: 126 L 126
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 63/121 (52%), Gaps = 7/121 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++++GD GKT+++ + Y T+ ++ T ++ E++ L +WDT+G
Sbjct: 29 KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPY 87
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ ++ Y +D +L +D++ ++ D+ L WR E L PS +++G KTD
Sbjct: 88 YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL-DYCPST----RVLLIGCKTD 142
Query: 129 V 129
+
Sbjct: 143 L 143
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
+V+++G+ GVGK++L N + S + +G D + + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
G+ + L + D ++VY + SF+ + R + E+ P +++GN
Sbjct: 68 GENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
K+D+ VSE +A A + + ETSA NV+ FE I + L+ + +E
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DCKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 82/179 (45%), Gaps = 13/179 (7%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDR---LFTLQIWDTA 65
+V+++G+ GVGK++L N + S + +G D + + + + L +W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENK 67
Query: 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125
G+ + L + D ++VY + SF+ + R + E+ P +++GN
Sbjct: 68 GENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL---RRARQTEDIPIILVGN 122
Query: 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
K+D+ VSE +A A + + ETSA NV+ FE I + L+ + +E
Sbjct: 123 KSDLVRXREVSVSEGRAXAVVF---DXKFIETSAAVQHNVKELFEGIVRQVRLRRDSKE 178
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 9/177 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+ KV++LG GVGK++L + + +A + + + +L ++D Q
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGG--VEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQ 64
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
+ + L D V+VY V SF+ + R + L +A +D + P +++GNK+
Sbjct: 65 DGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKS 121
Query: 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA-LKNEPQE 183
D+ SR VS + +A CA + + ETSA NV+A FE + + L+ + +E
Sbjct: 122 DLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKE 175
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 80/167 (47%), Gaps = 10/167 (5%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQE 68
KV++LG GVGK++L + + + +A + V E+ L IW+ G
Sbjct: 4 KVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGR 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+A D V+VY V SF+ + R + L +A +D + P +++GNK+D
Sbjct: 64 WLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNKSD 117
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
+ SR VS + +A CA + + ETSA NV+A FE + +
Sbjct: 118 LV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 161
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 81/169 (47%), Gaps = 10/169 (5%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAG 66
+ KV++LG GVGK++L + + + +A + V E+ L IW+ G
Sbjct: 7 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDG 66
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
+A D V+VY V SF+ + R + L +A +D + P +++GNK
Sbjct: 67 GRWLPGHCMAM---GDAYVIVYSVTDKGSFEKASELRVQ-LRRARQTD--DVPIILVGNK 120
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
+D+ SR VS + +A CA + + ETSA NV+A FE + +
Sbjct: 121 SDLV--RSREVSVDEGRA-CAVVFDCKFIETSAALHHNVQALFEGVVRQ 166
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 22/183 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKATIGADFLTKEVQFEDRLFTLQI 61
L++ +LGD+ GK+SL+++++ + S QYK KE+ + + + I
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYK---------KEMLVDGQTHLVLI 58
Query: 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121
+ AG + F AD + V+ + SF ++ + L
Sbjct: 59 REEAG-----APDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQ-LSSLRGEGRGGLALA 112
Query: 122 VLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181
++G + + + RVV + +A+A A Y+ET A G NV+ F+ +A+ +
Sbjct: 113 LVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRK 172
Query: 182 QEE 184
Q++
Sbjct: 173 QQQ 175
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 1 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R +SL +YR + + V D N + RE + + N ++V NK D
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 112
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
+ S +E K S N P+F T A G + E ++ N+LKN
Sbjct: 113 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 162
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R +SL +YR + + V D N + RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELRNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
+ S +E K S N P+F T A G + E ++ N+LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NSLKN 179
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+++ FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVETVQYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R +SL +YR + + V D N + RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSN---DRSRIGEAREVMQRMLNEDELRNAVWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKNE 180
+ S +E K S N P+F T A G + E ++ N LKN+
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNN-LKNQ 180
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ ++G GKT+ +N + +FS T+G F ++V + T++IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVG--FNMRKVTKGN--VTIKIWDIGGQP 78
Query: 69 RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
RF+S+ + RG + V + D + S + L+N ++ +Q P +VLG
Sbjct: 79 RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
NK D+ +K I + S KE N++ + + +++
Sbjct: 132 NKRDLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT--- 64
+ KV++LG+SGVGK++L + + N ++ D + + + TL ++D
Sbjct: 12 VFKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 71
Query: 65 --AG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-F 118
AG Q+ G AF ++V+ V +SF + E L++ P +
Sbjct: 72 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKV----PETLLRLRAGRPHHDL 120
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
P +++GNK+D+ SR VS ++ + + + + ETSA N FE
Sbjct: 121 PVILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 169
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ ++G GKT+ +N + +F+ T+G F +++ + T+++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 78
Query: 69 RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
RF+S+ + RG V + D + S + L+N ++ +Q P +VLG
Sbjct: 79 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 131
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
NK D+ G +K I + S KE N++ + + +++
Sbjct: 132 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 183
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 78/172 (45%), Gaps = 15/172 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ ++G GKT+ +N + +F+ T+G F +++ + T+++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVG--FNMRKITKGN--VTIKLWDIGGQP 87
Query: 69 RFQSLGVAFYRGADCCVLVYDV----NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124
RF+S+ + RG V + D + S + L+N ++ +Q P +VLG
Sbjct: 88 RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG-------IPVLVLG 140
Query: 125 NKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176
NK D+ G +K I + S KE N++ + + +++
Sbjct: 141 NKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS 192
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTL---QIW-- 62
+ KV+++G+SGVGK++L + + + ++ D + + + TL IW
Sbjct: 23 IFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQ 82
Query: 63 -DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-FPF 120
D G R L + D ++V+ V +SF + E L++ P + P
Sbjct: 83 GDAGGWLRDHCL-----QTGDAFLIVFSVTDRRSFSKV----PETLLRLRAGRPHHDLPV 133
Query: 121 VVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
+++GNK+D+ SR VS ++ + + + + ETSA N FE
Sbjct: 134 ILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 180
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 79/172 (45%), Gaps = 23/172 (13%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDT--- 64
+ KV+++G+SGVGK++L + + + ++ D + + + TL ++D
Sbjct: 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQ 61
Query: 65 --AG---QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPEN-F 118
AG Q+ G AF ++V+ V +SF + E L++ P +
Sbjct: 62 GDAGGWLQDHCLQTGDAF-------LIVFSVTDRRSFSKV----PETLLRLRAGRPHHDL 110
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170
P +++GNK+D+ SR VS ++ + + + + ETSA N FE
Sbjct: 111 PVILVGNKSDL--ARSREVSLEEGRHLAGTL-SCKHIETSAALHHNTRELFE 159
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKTS++ + K F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y+ + V D N D + REE + + + N +V NK D
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSN---DRDRIGEAREELMKMLNEDEMRNAILLVFANKHD 129
Query: 129 VDGGNS-RVVSEK------KAKAW-----CASKGNIPY 154
+ S V+EK K + W CA+ G+ Y
Sbjct: 130 LPQAMSISEVTEKLGLQTIKNRKWYCQTSCATNGDGLY 167
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 74/168 (44%), Gaps = 26/168 (15%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V+F + FT +WD GQ+
Sbjct: 18 VRILMVGLDAAGKTTILYKV---KLGEVVTTIPTIGFNVETVEFRNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y D + V D N + D+ REE + + ++ +V NK D
Sbjct: 73 KIRPLWRHYYSNTDGLIFVVDSNDRERIDDA---REELHRMINEEELKDAIILVFANKQD 129
Query: 129 VDGGNSRV-VSEK------KAKAW-----CASKGNIPYFETSAKEGFN 164
+ S V+EK + + W CA++G+ Y EGF+
Sbjct: 130 LPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLY------EGFD 171
>pdb|1YZG|A Chain A, Structure Of Human Adp-ribosylation Factor-like 8
Length = 179
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q++ + + TIG++ +E+ ++ F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFLMNEVVHT-SPTIGSN--VEEIVVKNTHFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKT 127
+S +Y + +LV D S D L +EE + D ++ NK
Sbjct: 73 LRSSWNTYYSNTEFIILVVD-----SIDRERLAITKEELYRMLAHEDLRKAAVLIFANKQ 127
Query: 128 DVDG 131
D+ G
Sbjct: 128 DMKG 131
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 84/171 (49%), Gaps = 19/171 (11%)
Query: 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----- 67
ILG G GK++L +++ ++F ++Y + D + E + + L++ DTA
Sbjct: 26 ILGRRGAGKSALTVKFLTKRFISEYDPNL-EDTYSSEETVDHQPVHLRVMDTADLDTPRN 84
Query: 68 -ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
ER+ + AF ++VY V+ +SFD+ +++ E + A + + P ++LGNK
Sbjct: 85 CERYLNWAHAF-------LVVYSVDSRQSFDSSSSYLELLALHAKETQ-RSIPALLLGNK 136
Query: 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEAAFECIAKNA 176
D+ R V++ + A G + +FE SA F +V+ F + A
Sbjct: 137 LDM--AQYRQVTKAEGVALAGRFGCL-FFEVSACLDFEHVQHVFHEAVREA 184
>pdb|3QQ5|A Chain A, Crystal Structure Of The [fefe]-Hydrogenase Maturation
Protein Hydf
Length = 423
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 57/131 (43%), Gaps = 23/131 (17%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++ G VGK+S MN V + S + Y T D + K ++ + + + DT G +
Sbjct: 37 IVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTT-TDPVYKSMELHP-IGPVTLVDTPGLD 94
Query: 69 RFQSLG--------VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
LG FYR ADC +LV D D++ N +E PF
Sbjct: 95 DVGELGRLRVEKARRVFYR-ADCGILVTDSAPTPYEDDVVNLFKEM----------EIPF 143
Query: 121 VVLGNKTDVDG 131
VV+ NK DV G
Sbjct: 144 VVVVNKIDVLG 154
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 74/173 (42%), Gaps = 13/173 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G G GKT+++ + K F + VQ+ + FT +WD GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKL---KLGEVITTIPTIGFNVECVQYCNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R +SL +Y + + V D N + RE + + N ++V NK D
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSN---DRSRIGEAREVMQRMLNEDELCNAAWLVFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIAKNALKN 179
+ S +E K S N P+F T A G + E ++ N LKN
Sbjct: 130 LPEAMS--AAEITEKLGLHSIRNRPWFIQATCATSGEGLYEGLEWLS-NCLKN 179
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 63/145 (43%), Gaps = 15/145 (10%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 17 LRLLMLGLDNAGKTTILKKF-NGEDIDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 72 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 128
Query: 129 VDGGNS----RVVSEK---KAKAWC 146
+ G S R V E ++ WC
Sbjct: 129 LPGALSSNAIREVLELDSIRSHHWC 153
>pdb|4GOJ|A Chain A, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
pdb|4GOJ|B Chain B, The Crystal Structure Of Full Length Arl3gppnhp In Complex
With Unc119a
Length = 189
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q + S+ T F K VQ + F L +WD GQ
Sbjct: 18 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
+ + +++ D + V D K F+
Sbjct: 73 KIRPYWRSYFENTDILIYVIDSADRKRFE 101
>pdb|1FZQ|A Chain A, Crystal Structure Of Murine Arl3-Gdp
Length = 181
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q + S+ T F K VQ + F L +WD GQ
Sbjct: 17 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
+ + +++ D + V D K F+
Sbjct: 72 KIRPYWRSYFENTDILIYVIDSADRKRFE 100
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 78
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 79 LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 135
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 72
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 73 LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 129
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 8/120 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
KVII+G GKT+++ Q+ + + TIG++ +E+ + F + WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSN--VEEIVINNTRFLM--WDIGGQES 77
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+S +Y + ++V D + ++ REE + D ++ NK DV
Sbjct: 78 LRSSWNTYYTNTEFVIVVVDST---DRERISVTREELYKMLAHEDLRKAGLLIFANKQDV 134
>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1
Length = 186
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
+ G S
Sbjct: 131 LPGALS 136
>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native)
Length = 186
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L++++LG GKT+++ ++ N + + T+G + T E R F L IWD GQ+
Sbjct: 19 LRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQK 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+S ++ D + V D + + + L++ + ++ NK D
Sbjct: 74 SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQD 130
Query: 129 VDGGNS 134
+ G S
Sbjct: 131 LPGALS 136
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 1 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 56 KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ + N+ +++K + + W CA+ G+ Y
Sbjct: 113 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 150
>pdb|3BH7|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gdp-Alf4
Length = 164
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q + S+ T F K VQ + F L +WD GQ
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGQR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
+ + +++ D + V D K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 73 KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ + N+ +++K + + W CA+ G+ Y
Sbjct: 130 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 167
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 17 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 71
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 72 KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 128
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ + N+ +++K + + W CA+ G+ Y
Sbjct: 129 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 166
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 16/128 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKE------VQFEDRL--FTLQ 60
+KV ++GD GKTSL+ Q + F + T G + +TK+ ++ +D L
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
WD GQE + F + +L+ D ++ N + W S P
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD---SRTDSNKHYWLRHIEKYGGKS-----PV 153
Query: 121 VVLGNKTD 128
+V+ NK D
Sbjct: 154 IVVMNKID 161
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 72/158 (45%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 166 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 220
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +++ + V D N + +N REE + + + + +V NK D
Sbjct: 221 KIRPLWRHYFQNTQGLIFVVDSN---DRERVNEAREELMRMLAEDELRDAVLLVFANKQD 277
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ + N+ +++K + + W CA+ G+ Y
Sbjct: 278 LPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY 315
>pdb|1RFL|A Chain A, Nmr Data Driven Structural Model Of G-Domain Of Mnme
Protein
Length = 172
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG- 66
+KV+I G GK+SL+N R+ + A D L + + + L I DTAG
Sbjct: 8 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGL 65
Query: 67 ---QERFQSLGVAF----YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
+ + +G+ AD + + D + D W EF+ + P P
Sbjct: 66 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARL----PAKLP 120
Query: 120 FVVLGNKTDVDG 131
V+ NK D+ G
Sbjct: 121 ITVVRNKADITG 132
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 71/174 (40%), Gaps = 22/174 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++ILG G GKT+++ + + TIG F + V +++ F Q+WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGQT 57
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ +Y D + V D D + + E + + VV NK D
Sbjct: 58 SIRPYWRCYYSNTDAVIYVVDSC---DRDRIGISKSELVAMLEEEELRKAILVVFANKQD 114
Query: 129 VDG-------GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
++ N+ + K + W F+TSA +G ++ A E + +
Sbjct: 115 MEQAMTPSEMANALGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVET 161
>pdb|2GJ9|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|C Chain C, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJ9|D Chain D, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Rb+
pdb|2GJA|A Chain A, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
pdb|2GJA|B Chain B, Structure Of The Mnme G-Domain In Complex With GdpAlf4-,
Mg2+ And Nh4+
Length = 172
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 54/132 (40%), Gaps = 16/132 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG- 66
+KV+I G GK+SL+N R+ + A D L + + + L I DTAG
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGL 62
Query: 67 ---QERFQSLGVAF----YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP 119
+ + +G+ AD + + D + D W EF+ + P P
Sbjct: 63 REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIW-PEFIARL----PAKLP 117
Query: 120 FVVLGNKTDVDG 131
V+ NK D+ G
Sbjct: 118 ITVVRNKADITG 129
>pdb|4BAS|A Chain A, Structure Of The Arl6 Bbs3 Small Gtpase From Trypanosoma
Brucei With Bound Nucleotide Analogue Gppnp
Length = 199
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 19/136 (13%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
L+V++ G GKT+++NQ + S+++ AT+G + T FE ++D G
Sbjct: 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET----FEKGRVAFTVFDMGGA 73
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE---------NF 118
++F+ L +Y D + V D S D+L + IQA +
Sbjct: 74 KKFRGLWETYYDNIDAVIFVVD-----SSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRV 128
Query: 119 PFVVLGNKTDVDGGNS 134
PF+ NK D G +
Sbjct: 129 PFLFFANKMDAAGAKT 144
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 68/158 (43%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 30 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNICFT--VWDVGGQD 84
Query: 69 RFQSLGVAFYRGADCCVLVYDVN----VMKSFDNLNNWREE-------FLIQASPSD-PE 116
+ + L +++ + V D N V +S D L +E L+ A+ D P
Sbjct: 85 KIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144
Query: 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154
P L +K + SR +A CA++G Y
Sbjct: 145 AMPVSELTDKLGLQHLRSRTWY---VQATCATQGTGLY 179
>pdb|4GOK|B Chain B, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
pdb|4GOK|A Chain A, The Crystal Structure Of Arl2gppnhp In Complex With
Unc119a
Length = 169
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67
+L++++LG GKT+++ ++ N + + T+G + T E R F L IWD G
Sbjct: 1 MLRLLMLGLDNAGKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGL 55
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
+ +S ++ D + V D + + + L++ + ++ NK
Sbjct: 56 KSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGA---TLLIFANKQ 112
Query: 128 DVDGGNS 134
D+ G S
Sbjct: 113 DLPGALS 119
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 70/174 (40%), Gaps = 22/174 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++ILG G GKT+++ + + TIG F + V +++ F Q+WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGLT 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ +Y D + V D D + + E + + VV NK D
Sbjct: 60 SIRPYWRCYYSNTDAVIYVVDSC---DRDRIGISKSELVAMLEEEELRKAILVVFANKQD 116
Query: 129 VDG-------GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175
++ NS + K + W F+TSA +G ++ A E + +
Sbjct: 117 MEQAMTSSEMANSLGLPALKDRKW-------QIFKTSATKGTGLDEAMEWLVET 163
>pdb|3BH6|A Chain A, Crystal Structure Of The Rp2-Arl3 Complex Bound To
Gppnhp
Length = 164
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+L+ Q + S+ T F K VQ + F L +WD G
Sbjct: 5 VRILLLGLDNAGKTTLLKQLASEDISH---ITPTQGFNIKSVQSQG--FKLNVWDIGGLR 59
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFD 97
+ + +++ D + V D K F+
Sbjct: 60 KIRPYWRSYFENTDILIYVIDSADRKRFE 88
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 17/133 (12%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70
V I+G GKT+L++ + K + Q I +V D+ T DT G E F
Sbjct: 11 VTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITF--LDTPGHEAF 68
Query: 71 QSLGVAFYRGADCCVLVY--DVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
++ + D +LV D VM ++ + +N+ + N P +V NK
Sbjct: 69 TTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKA-----------ANVPIIVAINKM 117
Query: 128 DVDGGNS-RVVSE 139
D N RV+ E
Sbjct: 118 DKPEANPDRVMQE 130
>pdb|2GJ8|A Chain A, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|B Chain B, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|C Chain C, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
pdb|2GJ8|D Chain D, Structure Of The Mnme G-domain In Complex With Gdp*alf4-,
Mg2+ And K+
Length = 172
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 16/131 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAG-- 66
KV+I G GK+SL+N R+ + A D L + + + L I DTAG
Sbjct: 6 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--XPLHIIDTAGLR 63
Query: 67 --QERFQSLGVAF----YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF 120
+ + +G+ AD + D + D W EF+ + P P
Sbjct: 64 EASDEVERIGIERAWQEIEQADRVLFXVDGTTTDAVDPAEIW-PEFIARL----PAKLPI 118
Query: 121 VVLGNKTDVDG 131
V+ NK D+ G
Sbjct: 119 TVVRNKADITG 129
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 8/126 (6%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
L+++ILG G GKT+++ + + K TIG F + + +++ L +WD GQ
Sbjct: 19 LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIG--FNVETLSYKN--LKLNVWDLGGQT 73
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ +Y AD +++ V+ D ++ +E + + ++ +V NK D
Sbjct: 74 SIRPYWRCYY--ADTAAVIFVVDSTDK-DRMSTASKELHLMLQEEELQDAALLVFANKQD 130
Query: 129 VDGGNS 134
G S
Sbjct: 131 QPGALS 136
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 112
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 323 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 377
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 378 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 434
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 435 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 472
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 67
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 124
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 125 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD GQ+
Sbjct: 1 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQD 55
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 112
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 113 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 12/167 (7%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 18 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNICFT--VWDVGGQD 72
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
R + L +++ + V D N + + + ++ L+ D ++ NK D
Sbjct: 73 RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDA---VLLLFANKQD 129
Query: 129 VDGGNSRVVSEKKAKAWCASKGNIPYF--ETSAKEGFNVEAAFECIA 173
+ N+ +SE K S N ++ T A +G + + ++
Sbjct: 130 LP--NAMAISEMTDKLGLQSLRNRTWYVQATCATQGTGLYEGLDWLS 174
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 20/157 (12%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+++ LG GKT+++ + K F + V +++ F +WD GQ++
Sbjct: 2 RILXLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGQDK 56
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ L +Y G + V D D ++ R+E + + + ++ NK D+
Sbjct: 57 IRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREXRDAIILIFANKQDL 113
Query: 130 -DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
D + EK + + W CA+ G+ Y
Sbjct: 114 PDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
M +++++LG GKT+++ + K F + V +++ F +WD G
Sbjct: 1 MEMRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGG 55
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
++ + L +Y G + V D D ++ R+E + + + ++ NK
Sbjct: 56 LDKIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANK 112
Query: 127 TDV-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
D+ D + EK + + W CA+ G+ Y
Sbjct: 113 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 152
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 65/160 (40%), Gaps = 20/160 (12%)
Query: 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
M +++++LG GKT+++ + K F + V +++ F +WD G
Sbjct: 2 MEMRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGG 56
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
++ + L +Y G + V D D ++ R+E + + + ++ NK
Sbjct: 57 LDKIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANK 113
Query: 127 TDV-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
D+ D + EK + + W CA+ G+ Y
Sbjct: 114 QDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 153
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 69/158 (43%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
++++++G GKT+++ + K F + V++++ FT +WD GQ+
Sbjct: 21 MRILMVGLDAAGKTTILYKL---KLGEIVTTIPTIGFNVETVEYKNISFT--VWDVGGQD 75
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +++ + V D N D + R+E + + + +V NK D
Sbjct: 76 KIRPLWRHYFQNTQGLIFVVDSN---DRDRVVEARDELHRMLNEDELRDAVLLVFANKQD 132
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ + N+ +++K + + W CA+ G Y
Sbjct: 133 LPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLY 170
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 64/158 (40%), Gaps = 20/158 (12%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+++++LG GKT+++ + K F + V +++ F +WD G +
Sbjct: 14 MRILMLGLDAAGKTTILYKL---KLGQSVTTIPTVGFNVETVTYKNVKF--NVWDVGGLD 68
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128
+ + L +Y G + V D D ++ R+E + + + ++ NK D
Sbjct: 69 KIRPLWRHYYTGTQGLIFVVDC---ADRDRIDEARQELHRIINDREMRDAIILIFANKQD 125
Query: 129 V-DGGNSRVVSEK------KAKAW-----CASKGNIPY 154
+ D + EK + + W CA+ G+ Y
Sbjct: 126 LPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
>pdb|1KSJ|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet)
Length = 186
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 20 GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79
GKT+++ ++ N + + T+G + T E R F L IWD GQ+ +S ++
Sbjct: 30 GKTTILKKF-NGEDVDTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFE 84
Query: 80 GADCCVLVYD 89
D + V D
Sbjct: 85 STDGLIWVVD 94
>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|B Chain B, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
pdb|2H57|C Chain C, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6
Length = 190
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 63/153 (41%), Gaps = 21/153 (13%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
+ V+ LG GKT+++N+ K SN I +F+ + ++D +GQ
Sbjct: 22 VHVLCLGLDNSGKTTIINKL---KPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQG 78
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNW--REEF--LIQASPSDPENFPFVVLG 124
R+++L +Y+ + V D S D L +EE L+ P +
Sbjct: 79 RYRNLWEHYYKEGQAIIFVID-----SSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFA 133
Query: 125 NKTDV-DGGNSRVVSEK------KAKAW--CAS 148
NK D+ D S VS+ K K W CAS
Sbjct: 134 NKMDLRDAVTSVKVSQLLCLENIKDKPWHICAS 166
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 9 LKVIILGDSGVGKTSLMNQYVN--RKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
L+++I+G VGK++L+N+ +N R T D +++E+ LF +I DTAG
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGILF--RIVDTAG 300
>pdb|2GAO|A Chain A, Crystal Structure Of Human Sar1a In Complex With Gdp
pdb|2GAO|B Chain B, Crystal Structure Of Human Sar1a In Complex With Gdp
Length = 208
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 18/157 (11%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
K++ LG GKT+L++ + + Q+ T+ ++E+ FT +D G E+
Sbjct: 37 KLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAGMTFT--TFDLGGHEQ 91
Query: 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129
+ + + + V + D L + E + N P ++LGNK D
Sbjct: 92 ARRVWKNYLPAINGIVFLVDC---ADHSRLVESKVELNALMTDETISNVPILILGNKID- 147
Query: 130 DGGNSRVVSEKKAK------AWCASKGNIPYFETSAK 160
+ +SE+K + KGN+ E +A+
Sbjct: 148 ---RTDAISEEKLREIFGLYGQTTGKGNVTLKELNAR 181
>pdb|1M2O|B Chain B, Crystal Structure Of The Sec23-Sar1 Complex
pdb|1M2O|D Chain D, Crystal Structure Of The Sec23-Sar1 Complex
Length = 190
Score = 30.0 bits (66), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 14/122 (11%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66
K++ LG GKT+L++ N + + + T ++E+ + FT +D G
Sbjct: 25 KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPT------SEELAIGNIKFT--TFDLGG 76
Query: 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126
+ + L ++ + V + D + FD R E + ++ ++ PFV+LGNK
Sbjct: 77 HIQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNK 133
Query: 127 TD 128
D
Sbjct: 134 ID 135
>pdb|1YE8|A Chain A, Crystal Structure Of Thep1 From The Hyperthermophile
Aquifex Aeolicus
Length = 178
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 10 KVIILGDSGVGKTSLMNQYVNR 31
K+II G+ GVGKT+L+ + V R
Sbjct: 2 KIIITGEPGVGKTTLVKKIVER 23
>pdb|2QTV|B Chain B, Structure Of Sec23-Sar1 Complexed With The Active Fragment
Of Sec31
Length = 167
Score = 30.0 bits (66), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF--LTKEVQFEDRLFTLQIWDTAGQ 67
K++ LG GKT+L++ N + AT+ + ++E+ + FT +D G
Sbjct: 3 KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFT--TFDLGGH 55
Query: 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127
+ + L ++ + V + D + FD R E + ++ ++ PFV+LGNK
Sbjct: 56 IQARRLWKDYFPEVNGIVFLVDAADPERFDEA---RVELDALFNIAELKDVPFVILGNKI 112
Query: 128 D 128
D
Sbjct: 113 D 113
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human Grlf1
(P190rhogap)
Length = 255
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 119 PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174
P VV+ K D G R + + A + SK N+ ETSA+ NV+ AF + +
Sbjct: 200 PIVVVLTK--CDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQ 251
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain
With Arl1
Length = 171
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69
+++ILG G GKT+++ + + TIG F + V +++ F Q+WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEVVTTI-PTIG--FNVETVTYKNLKF--QVWDLGGLTS 63
Query: 70 FQSLGVAFYRGADCCVLVYD 89
+ +Y D + V D
Sbjct: 64 IRPYWRCYYSNTDAVIYVVD 83
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The
P21-Like Triphosphate And Mg2+ Binding Site
Length = 128
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68
LK +++G+ G GK+++ N F+N A G D L K +Q F + W+ +
Sbjct: 5 LKFLVVGNGGTGKSTVRNLLKELGFNNVEDAEDGVDALNK-LQAGGYGFVISDWNMPNMD 63
Query: 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNL 99
+ L GA + V V +N+
Sbjct: 64 GLELLKTIRADGAMSALPVLMVTAEAKKENI 94
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLF--- 57
M+S R K++++G SG GK+S M + +S +GA T +V+ F
Sbjct: 1 MSSNNRK--KLLLMGRSGSGKSS-MRSIIFSNYSAFDTRRLGA---TIDVEHSHLRFLGN 54
Query: 58 -TLQIWDTAGQERF 70
TL +WD GQ+ F
Sbjct: 55 MTLNLWDCGGQDVF 68
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 2 ASRRRMLLKVIILGDS----GVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLF 57
A + + KV++ G + G K NQ+ + K G T +QF
Sbjct: 24 AGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDC 82
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89
+ + DT G E F DCC++V D
Sbjct: 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVID 114
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 5/92 (5%)
Query: 2 ASRRRMLLKVIILGDS----GVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLF 57
A + + KV++ G + G K NQ+ + K G T +QF
Sbjct: 24 AGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQR-GISITTSVMQFPYHDC 82
Query: 58 TLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89
+ + DT G E F DCC++V D
Sbjct: 83 LVNLLDTPGHEDFSEDTYRTLTAVDCCLMVID 114
>pdb|2QAG|B Chain B, Crystal Structure Of Human Septin Trimer 267
Length = 427
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFSNQ 36
++ +G++G+GK++LM+ N KF +
Sbjct: 45 ILCVGETGLGKSTLMDTLFNTKFEGE 70
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGA 43
++I G+SG GKT VN K QY ATI A
Sbjct: 172 ILITGESGAGKT------VNTKRVIQYFATIAA 198
>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc
pdb|1SUL|B Chain B, Crystal Structure Of The Apo-Ysxc
pdb|1SVI|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ysxc
Complexed With Gdp
pdb|1SVW|A Chain A, Crystal Structure Of Ysxc Complexed With Gmppnp
pdb|1SVW|B Chain B, Crystal Structure Of Ysxc Complexed With Gmppnp
Length = 195
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 8 LLKVIILGDSGVGKTSLMNQYVNRK 32
L ++ + G S VGK+S +N +NRK
Sbjct: 23 LPEIALAGRSNVGKSSFINSLINRK 47
>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PQC|B Chain B, Crystal Structure Of Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN
COMPLEX WITH GDP
pdb|3PR1|A Chain A, Crystal Structure Of Apo Thermotoga Maritima Ribosome
Biogenesis Gtp- Binding Protein Engb
Length = 195
Score = 26.6 bits (57), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFS 34
V +G S VGK+SL+N NRK +
Sbjct: 26 VAFVGRSNVGKSSLLNALFNRKIA 49
>pdb|1YR6|A Chain A, Pab0955 Crystal Structure : A Gtpase In Apo Form From
Pyrococcus Abyssi
pdb|1YR7|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp-Gamma-S
Bound Form From Pyrococcus Abyssi
pdb|1YR8|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gtp Bound Form
From Pyrococcus Abyssi
pdb|1YR9|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Po4
Bound Form From Pyrococcus Abyssi
pdb|1YRA|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRA|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp Bound Form
From Pyrococcus Abyssi
pdb|1YRB|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|1YRB|B Chain B, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi
pdb|2OXR|A Chain A, Pab0955 Crystal Structure : A Gtpase In Gdp And Mg Bound
Form From Pyrococcus Abyssi (After Gtp Hydrolysis)
Length = 262
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 11 VIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFE 53
V+ +G +G GKT+L ++ R + YK A + D KE+ +E
Sbjct: 17 VVFVGTAGSGKTTLTGEF-GRYLEDNYKVAYVNLDTGVKELPYE 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,328,351
Number of Sequences: 62578
Number of extensions: 216333
Number of successful extensions: 1425
Number of sequences better than 100.0: 371
Number of HSP's better than 100.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 375
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)