Query 029929
Match_columns 185
No_of_seqs 154 out of 1872
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:52:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0394 Ras-related GTPase [Ge 100.0 1.7E-40 3.6E-45 214.6 17.4 181 1-181 1-182 (210)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 3.5E-39 7.7E-44 211.0 18.7 173 2-181 3-176 (205)
3 KOG0092 GTPase Rab5/YPT51 and 100.0 2.4E-38 5.1E-43 206.4 17.8 171 6-183 3-173 (200)
4 KOG0078 GTP-binding protein SE 100.0 6.4E-37 1.4E-41 203.2 19.3 171 5-182 9-179 (207)
5 cd04121 Rab40 Rab40 subfamily. 100.0 1.6E-36 3.5E-41 206.4 21.7 169 6-182 4-172 (189)
6 cd04120 Rab12 Rab12 subfamily. 100.0 1.5E-36 3.2E-41 208.4 21.3 165 9-179 1-165 (202)
7 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 7.2E-37 1.6E-41 199.7 17.1 168 7-180 21-188 (221)
8 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 8.7E-36 1.9E-40 205.6 21.5 171 9-181 1-172 (201)
9 KOG0098 GTPase Rab2, small G p 100.0 8.6E-36 1.9E-40 193.2 16.2 168 6-180 4-171 (216)
10 cd04122 Rab14 Rab14 subfamily. 100.0 6.3E-35 1.4E-39 195.8 21.1 164 8-178 2-165 (166)
11 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.4E-35 1.4E-39 197.6 20.5 167 6-178 3-181 (182)
12 KOG0080 GTPase Rab18, small G 100.0 1.7E-35 3.7E-40 187.4 16.3 169 6-180 9-177 (209)
13 cd01867 Rab8_Rab10_Rab13_like 100.0 1.2E-34 2.7E-39 194.5 21.2 165 7-178 2-166 (167)
14 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.2E-34 2.6E-39 195.3 20.7 167 8-181 2-168 (172)
15 cd04133 Rop_like Rop subfamily 100.0 9.7E-35 2.1E-39 195.6 20.2 163 9-177 2-173 (176)
16 cd01875 RhoG RhoG subfamily. 100.0 2.1E-34 4.5E-39 197.1 21.2 167 8-180 3-180 (191)
17 cd04116 Rab9 Rab9 subfamily. 100.0 2.6E-34 5.6E-39 193.5 21.1 168 5-175 2-169 (170)
18 cd04127 Rab27A Rab27a subfamil 100.0 3.2E-34 7E-39 194.7 21.1 167 7-179 3-179 (180)
19 cd04131 Rnd Rnd subfamily. Th 100.0 2.7E-34 5.9E-39 194.2 20.4 163 9-177 2-176 (178)
20 cd01865 Rab3 Rab3 subfamily. 100.0 5.3E-34 1.1E-38 191.1 21.4 163 9-178 2-164 (165)
21 cd04119 RJL RJL (RabJ-Like) su 100.0 4.5E-34 9.7E-39 191.8 20.7 166 9-177 1-167 (168)
22 cd04117 Rab15 Rab15 subfamily. 100.0 5.1E-34 1.1E-38 190.4 20.1 160 9-175 1-160 (161)
23 cd01864 Rab19 Rab19 subfamily. 100.0 7E-34 1.5E-38 190.5 20.6 163 7-175 2-164 (165)
24 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 8.8E-34 1.9E-38 190.2 20.9 164 8-178 2-165 (166)
25 cd04109 Rab28 Rab28 subfamily. 100.0 9.7E-34 2.1E-38 197.2 21.8 167 9-179 1-168 (215)
26 cd04110 Rab35 Rab35 subfamily. 100.0 9.8E-34 2.1E-38 195.0 21.5 168 6-181 4-171 (199)
27 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.2E-33 2.5E-38 190.1 21.3 165 10-178 2-166 (170)
28 PTZ00369 Ras-like protein; Pro 100.0 8.4E-34 1.8E-38 194.0 20.6 169 6-181 3-171 (189)
29 cd04111 Rab39 Rab39 subfamily. 100.0 1E-33 2.3E-38 196.2 21.1 169 8-182 2-171 (211)
30 cd04128 Spg1 Spg1p. Spg1p (se 100.0 9.6E-34 2.1E-38 192.2 20.3 165 9-179 1-168 (182)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 7.3E-34 1.6E-38 191.9 19.6 162 9-176 2-174 (175)
32 cd04136 Rap_like Rap-like subf 100.0 8.7E-34 1.9E-38 189.6 19.8 161 9-176 2-162 (163)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 1.4E-33 3.1E-38 188.9 20.2 163 8-177 1-163 (164)
34 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 1.8E-33 3.9E-38 196.1 21.3 167 7-179 12-190 (232)
35 cd04112 Rab26 Rab26 subfamily. 100.0 1.9E-33 4E-38 192.6 21.1 166 9-181 1-167 (191)
36 PLN03071 GTP-binding nuclear p 100.0 1.4E-33 3E-38 196.6 20.6 164 6-179 11-174 (219)
37 cd01862 Rab7 Rab7 subfamily. 100.0 3.2E-33 6.9E-38 188.5 21.8 170 9-180 1-170 (172)
38 cd01868 Rab11_like Rab11-like. 100.0 2.4E-33 5.2E-38 187.9 20.9 162 8-176 3-164 (165)
39 cd04125 RabA_like RabA-like su 100.0 2.5E-33 5.5E-38 191.5 21.3 166 9-181 1-166 (188)
40 KOG0086 GTPase Rab4, small G p 100.0 2.5E-34 5.5E-39 180.8 14.6 173 1-180 2-174 (214)
41 cd04144 Ras2 Ras2 subfamily. 100.0 1.5E-33 3.2E-38 192.9 19.7 169 10-183 1-169 (190)
42 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.9E-34 1.3E-38 188.4 16.8 167 6-179 12-178 (222)
43 KOG0079 GTP-binding protein H- 100.0 2.5E-34 5.5E-39 179.7 13.7 165 7-179 7-171 (198)
44 cd04106 Rab23_lke Rab23-like s 100.0 3.2E-33 7E-38 186.7 19.9 159 9-175 1-161 (162)
45 cd00877 Ran Ran (Ras-related n 100.0 5.4E-33 1.2E-37 186.2 20.9 161 9-179 1-161 (166)
46 smart00175 RAB Rab subfamily o 100.0 5.6E-33 1.2E-37 185.9 20.9 164 9-179 1-164 (164)
47 cd01866 Rab2 Rab2 subfamily. 100.0 7.2E-33 1.6E-37 186.1 21.4 165 7-178 3-167 (168)
48 smart00173 RAS Ras subfamily o 100.0 4.8E-33 1E-37 186.3 20.3 163 9-178 1-163 (164)
49 cd04124 RabL2 RabL2 subfamily. 100.0 7.2E-33 1.6E-37 184.9 21.0 161 9-180 1-161 (161)
50 cd04113 Rab4 Rab4 subfamily. 100.0 4.6E-33 1E-37 185.8 19.8 160 9-175 1-160 (161)
51 PLN03110 Rab GTPase; Provision 100.0 6.4E-33 1.4E-37 193.0 21.1 167 6-179 10-176 (216)
52 cd04134 Rho3 Rho3 subfamily. 100.0 6E-33 1.3E-37 189.7 20.1 165 10-180 2-177 (189)
53 cd01871 Rac1_like Rac1-like su 100.0 5.8E-33 1.2E-37 187.3 19.7 161 9-175 2-173 (174)
54 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.2E-32 2.6E-37 183.8 20.3 160 9-176 2-161 (162)
55 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.8E-32 3.9E-37 184.5 20.9 163 8-176 2-168 (170)
56 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.3E-32 2.9E-37 190.9 20.7 166 9-180 2-179 (222)
57 cd04176 Rap2 Rap2 subgroup. T 100.0 9.4E-33 2E-37 184.7 19.3 161 9-176 2-162 (163)
58 PF00071 Ras: Ras family; Int 100.0 8.8E-33 1.9E-37 184.6 19.1 161 10-177 1-161 (162)
59 cd04142 RRP22 RRP22 subfamily. 100.0 1.7E-32 3.7E-37 188.2 20.8 170 9-181 1-178 (198)
60 cd04140 ARHI_like ARHI subfami 100.0 1.9E-32 4.1E-37 183.6 20.3 162 9-175 2-163 (165)
61 cd01861 Rab6 Rab6 subfamily. 100.0 2E-32 4.2E-37 182.8 19.8 160 9-175 1-160 (161)
62 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3.1E-32 6.6E-37 182.3 20.7 162 8-176 2-163 (164)
63 PLN03108 Rab family protein; P 100.0 3.2E-32 7E-37 188.8 21.2 167 7-180 5-171 (210)
64 cd01860 Rab5_related Rab5-rela 100.0 4.3E-32 9.3E-37 181.5 20.6 162 8-176 1-162 (163)
65 cd04118 Rab24 Rab24 subfamily. 100.0 5.4E-32 1.2E-36 185.7 21.5 166 9-180 1-169 (193)
66 cd04143 Rhes_like Rhes_like su 100.0 3.8E-32 8.2E-37 191.8 20.3 166 9-177 1-171 (247)
67 cd01892 Miro2 Miro2 subfamily. 100.0 3E-32 6.5E-37 183.1 18.9 165 6-178 2-167 (169)
68 cd04132 Rho4_like Rho4-like su 100.0 4.2E-32 9E-37 185.4 19.9 166 9-180 1-170 (187)
69 cd04103 Centaurin_gamma Centau 100.0 3.8E-32 8.3E-37 180.5 18.9 157 9-175 1-157 (158)
70 cd04126 Rab20 Rab20 subfamily. 100.0 4.8E-32 1E-36 188.0 20.2 161 9-178 1-191 (220)
71 KOG0093 GTPase Rab3, small G p 100.0 1.2E-32 2.5E-37 172.1 15.0 168 6-180 19-186 (193)
72 cd01863 Rab18 Rab18 subfamily. 100.0 8.6E-32 1.9E-36 179.7 20.3 160 9-175 1-160 (161)
73 KOG0095 GTPase Rab30, small G 100.0 5.5E-33 1.2E-37 174.2 13.3 166 7-179 6-171 (213)
74 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.1E-31 2.5E-36 179.6 20.4 160 9-176 1-163 (164)
75 smart00176 RAN Ran (Ras-relate 100.0 7.1E-32 1.5E-36 184.9 19.6 156 14-179 1-156 (200)
76 cd04177 RSR1 RSR1 subgroup. R 100.0 1.4E-31 3.1E-36 179.8 20.4 163 9-177 2-164 (168)
77 PLN03118 Rab family protein; P 100.0 1.9E-31 4.1E-36 185.3 21.6 168 6-180 12-180 (211)
78 cd04123 Rab21 Rab21 subfamily. 100.0 2E-31 4.2E-36 177.9 20.7 161 9-176 1-161 (162)
79 smart00174 RHO Rho (Ras homolo 100.0 1.1E-31 2.4E-36 181.3 19.1 162 11-178 1-173 (174)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 2E-31 4.4E-36 179.8 20.0 160 9-174 1-171 (173)
81 cd04148 RGK RGK subfamily. Th 100.0 2.6E-31 5.5E-36 185.4 20.6 164 9-180 1-166 (221)
82 cd04114 Rab30 Rab30 subfamily. 100.0 5.3E-31 1.2E-35 177.2 21.4 164 6-176 5-168 (169)
83 KOG0088 GTPase Rab21, small G 100.0 9.8E-33 2.1E-37 174.6 11.0 169 5-180 10-178 (218)
84 cd04135 Tc10 TC10 subfamily. 100.0 4.5E-31 9.9E-36 178.3 19.8 162 9-176 1-173 (174)
85 KOG0091 GTPase Rab39, small G 100.0 4.9E-32 1.1E-36 172.2 13.2 172 6-182 6-178 (213)
86 cd00154 Rab Rab family. Rab G 100.0 9E-31 2E-35 173.9 19.7 158 9-173 1-158 (159)
87 cd04139 RalA_RalB RalA/RalB su 100.0 1.7E-30 3.7E-35 173.7 20.3 163 9-178 1-163 (164)
88 cd04146 RERG_RasL11_like RERG/ 100.0 5.8E-31 1.3E-35 176.4 17.7 162 10-177 1-164 (165)
89 cd01873 RhoBTB RhoBTB subfamil 100.0 9.6E-31 2.1E-35 179.0 19.1 160 8-175 2-194 (195)
90 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 7.7E-31 1.7E-35 178.4 17.8 169 8-184 3-177 (183)
91 cd01870 RhoA_like RhoA-like su 100.0 2.3E-30 5E-35 175.0 19.9 162 9-176 2-174 (175)
92 cd04147 Ras_dva Ras-dva subfam 100.0 4.8E-30 1E-34 176.6 19.8 166 10-180 1-166 (198)
93 cd00876 Ras Ras family. The R 100.0 6.8E-30 1.5E-34 170.1 19.1 159 10-175 1-159 (160)
94 cd04158 ARD1 ARD1 subfamily. 100.0 2.5E-30 5.4E-35 173.9 17.0 159 10-180 1-164 (169)
95 cd04137 RheB Rheb (Ras Homolog 100.0 1.2E-29 2.5E-34 172.3 20.3 165 9-180 2-166 (180)
96 PLN00223 ADP-ribosylation fact 100.0 1.1E-30 2.5E-35 177.1 15.2 161 7-179 16-180 (181)
97 cd04129 Rho2 Rho2 subfamily. 100.0 1.2E-29 2.6E-34 173.2 20.4 169 9-183 2-179 (187)
98 cd04149 Arf6 Arf6 subfamily. 100.0 6.5E-31 1.4E-35 176.4 13.8 156 7-174 8-167 (168)
99 smart00177 ARF ARF-like small 100.0 1.4E-30 3E-35 176.0 15.3 159 7-177 12-174 (175)
100 cd04150 Arf1_5_like Arf1-Arf5- 100.0 1.8E-30 3.8E-35 172.9 14.3 154 9-174 1-158 (159)
101 cd00157 Rho Rho (Ras homology) 100.0 2.2E-29 4.8E-34 169.5 19.3 160 9-174 1-170 (171)
102 PTZ00133 ADP-ribosylation fact 100.0 3.8E-30 8.3E-35 174.7 15.4 161 7-179 16-180 (182)
103 cd01893 Miro1 Miro1 subfamily. 100.0 2.5E-29 5.5E-34 168.6 18.3 163 9-178 1-165 (166)
104 cd04154 Arl2 Arl2 subfamily. 100.0 4.2E-30 9.2E-35 173.4 14.4 157 6-174 12-172 (173)
105 cd04157 Arl6 Arl6 subfamily. 100.0 6.1E-30 1.3E-34 170.8 13.4 156 10-174 1-161 (162)
106 PTZ00132 GTP-binding nuclear p 100.0 2.3E-28 5E-33 170.3 21.4 166 5-180 6-171 (215)
107 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 6.7E-30 1.5E-34 170.9 12.8 155 10-174 1-163 (164)
108 KOG0097 GTPase Rab14, small G 100.0 9.8E-29 2.1E-33 153.9 14.7 169 6-181 9-177 (215)
109 PF00025 Arf: ADP-ribosylation 100.0 3E-29 6.4E-34 169.2 13.6 159 6-176 12-175 (175)
110 KOG0083 GTPase Rab26/Rab37, sm 100.0 9.6E-31 2.1E-35 161.2 5.5 161 12-179 1-162 (192)
111 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 5.3E-29 1.2E-33 168.2 14.4 155 8-174 15-173 (174)
112 cd04160 Arfrp1 Arfrp1 subfamil 100.0 3.7E-29 8E-34 167.9 13.6 154 10-174 1-166 (167)
113 KOG0395 Ras-related GTPase [Ge 100.0 2.3E-28 4.9E-33 166.4 17.2 165 7-178 2-166 (196)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 5.3E-29 1.1E-33 167.1 13.8 157 10-174 1-166 (167)
115 cd00878 Arf_Arl Arf (ADP-ribos 100.0 1.3E-28 2.8E-33 163.8 15.2 153 10-174 1-157 (158)
116 cd04156 ARLTS1 ARLTS1 subfamil 100.0 6.5E-29 1.4E-33 165.6 13.6 154 10-174 1-159 (160)
117 cd04151 Arl1 Arl1 subfamily. 100.0 6.2E-29 1.3E-33 165.4 13.1 153 10-174 1-157 (158)
118 KOG0073 GTP-binding ADP-ribosy 100.0 3.7E-28 8.1E-33 154.6 15.6 167 5-180 13-181 (185)
119 smart00178 SAR Sar1p-like memb 100.0 6.2E-28 1.4E-32 164.2 16.3 157 7-175 16-183 (184)
120 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.5E-27 3.2E-32 163.6 18.2 152 9-163 1-176 (202)
121 KOG0081 GTPase Rab27, small G 100.0 1.1E-29 2.4E-34 160.9 7.0 169 6-180 7-184 (219)
122 cd00879 Sar1 Sar1 subfamily. 100.0 7.7E-28 1.7E-32 164.7 16.6 157 7-175 18-189 (190)
123 KOG0393 Ras-related small GTPa 100.0 2.3E-28 5E-33 163.1 11.7 168 7-180 3-182 (198)
124 cd04159 Arl10_like Arl10-like 100.0 1.8E-27 4E-32 158.0 15.1 154 10-174 1-158 (159)
125 PRK12299 obgE GTPase CgtA; Rev 100.0 1.1E-26 2.4E-31 170.0 18.4 166 9-180 159-331 (335)
126 cd04171 SelB SelB subfamily. 100.0 6.3E-27 1.4E-31 156.5 15.7 154 10-174 2-163 (164)
127 cd01898 Obg Obg subfamily. Th 100.0 1.2E-26 2.6E-31 156.1 16.4 160 10-175 2-169 (170)
128 cd04155 Arl3 Arl3 subfamily. 100.0 3.3E-27 7.1E-32 159.3 13.6 157 6-174 12-172 (173)
129 PLN00023 GTP-binding protein; 100.0 3.8E-26 8.1E-31 163.9 19.5 145 6-150 19-188 (334)
130 cd01897 NOG NOG1 is a nucleola 100.0 1.7E-26 3.7E-31 155.1 16.2 156 9-176 1-167 (168)
131 cd01890 LepA LepA subfamily. 99.9 2.9E-26 6.3E-31 155.5 16.6 156 10-177 2-177 (179)
132 PTZ00099 rab6; Provisional 99.9 1.3E-25 2.9E-30 151.2 18.5 142 32-180 4-145 (176)
133 cd01878 HflX HflX subfamily. 99.9 5.1E-26 1.1E-30 157.4 16.0 156 6-175 39-203 (204)
134 TIGR00231 small_GTP small GTP- 99.9 1.9E-25 4.2E-30 148.1 18.0 157 9-173 2-160 (161)
135 PF02421 FeoB_N: Ferrous iron 99.9 2.1E-26 4.5E-31 150.2 11.6 148 9-172 1-156 (156)
136 KOG0070 GTP-binding ADP-ribosy 99.9 4.7E-26 1E-30 148.5 11.9 162 6-179 15-180 (181)
137 TIGR02528 EutP ethanolamine ut 99.9 7.3E-26 1.6E-30 148.0 12.7 135 10-173 2-141 (142)
138 TIGR00436 era GTP-binding prot 99.9 2.6E-25 5.6E-30 159.6 16.6 158 10-181 2-168 (270)
139 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.1E-25 6.8E-30 148.9 15.4 159 10-177 2-166 (168)
140 cd01889 SelB_euk SelB subfamil 99.9 2.1E-25 4.5E-30 152.9 14.4 163 9-179 1-188 (192)
141 TIGR02729 Obg_CgtA Obg family 99.9 6.9E-25 1.5E-29 160.5 17.4 161 9-176 158-328 (329)
142 cd01879 FeoB Ferrous iron tran 99.9 7.2E-25 1.6E-29 145.7 15.5 148 13-176 1-156 (158)
143 cd00882 Ras_like_GTPase Ras-li 99.9 2.2E-24 4.8E-29 141.9 17.1 155 13-173 1-156 (157)
144 PRK04213 GTP-binding protein; 99.9 1.5E-24 3.2E-29 149.7 16.5 159 6-181 7-196 (201)
145 cd00881 GTP_translation_factor 99.9 7.5E-25 1.6E-29 149.6 14.9 158 10-177 1-187 (189)
146 KOG4252 GTP-binding protein [S 99.9 4.5E-27 9.8E-32 152.0 3.6 168 7-182 19-186 (246)
147 KOG0075 GTP-binding ADP-ribosy 99.9 5.8E-26 1.3E-30 142.1 7.9 160 8-179 20-184 (186)
148 TIGR03156 GTP_HflX GTP-binding 99.9 2E-24 4.2E-29 159.4 17.2 154 7-175 188-350 (351)
149 cd01891 TypA_BipA TypA (tyrosi 99.9 1.7E-24 3.7E-29 148.6 14.7 149 9-166 3-171 (194)
150 COG1100 GTPase SAR1 and relate 99.9 1.5E-23 3.2E-28 146.5 19.1 168 8-179 5-187 (219)
151 PRK12297 obgE GTPase CgtA; Rev 99.9 1.2E-23 2.5E-28 157.7 19.0 162 9-180 159-330 (424)
152 PRK03003 GTP-binding protein D 99.9 4.8E-24 1E-28 163.7 17.2 164 7-180 210-385 (472)
153 PRK15494 era GTPase Era; Provi 99.9 8.3E-24 1.8E-28 155.8 17.3 162 6-183 50-222 (339)
154 PRK12298 obgE GTPase CgtA; Rev 99.9 1.3E-23 2.8E-28 156.7 18.0 167 9-181 160-337 (390)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.9 1E-23 2.2E-28 139.8 15.8 146 9-176 2-156 (157)
156 cd01888 eIF2_gamma eIF2-gamma 99.9 4E-24 8.8E-29 147.5 13.8 164 9-178 1-200 (203)
157 KOG0071 GTP-binding ADP-ribosy 99.9 2.4E-24 5.3E-29 133.9 11.2 159 7-177 16-178 (180)
158 TIGR00475 selB selenocysteine- 99.9 9.5E-24 2.1E-28 164.8 17.4 158 9-179 1-168 (581)
159 TIGR03594 GTPase_EngA ribosome 99.9 1.8E-23 3.9E-28 159.5 17.4 163 7-179 171-346 (429)
160 PRK12296 obgE GTPase CgtA; Rev 99.9 1.9E-23 4.1E-28 158.5 17.3 167 8-180 159-343 (500)
161 PF00009 GTP_EFTU: Elongation 99.9 2.4E-24 5.3E-29 147.1 11.0 162 7-177 2-187 (188)
162 COG1159 Era GTPase [General fu 99.9 1.3E-23 2.7E-28 147.3 14.6 164 8-183 6-178 (298)
163 cd01881 Obg_like The Obg-like 99.9 7.2E-24 1.6E-28 143.2 12.8 159 13-175 1-175 (176)
164 PRK00089 era GTPase Era; Revie 99.9 3.6E-23 7.8E-28 150.4 17.2 162 8-181 5-175 (292)
165 TIGR01393 lepA GTP-binding pro 99.9 3.8E-23 8.2E-28 161.6 18.4 161 8-180 3-183 (595)
166 PRK05291 trmE tRNA modificatio 99.9 1.9E-23 4.2E-28 159.0 16.3 149 7-178 214-371 (449)
167 KOG0076 GTP-binding ADP-ribosy 99.9 7.5E-25 1.6E-29 140.9 7.3 161 8-179 17-189 (197)
168 PRK00454 engB GTP-binding prot 99.9 3.8E-23 8.2E-28 142.2 16.1 161 6-178 22-195 (196)
169 TIGR03598 GTPase_YsxC ribosome 99.9 1.9E-23 4.1E-28 141.7 14.0 151 5-166 15-179 (179)
170 TIGR00450 mnmE_trmE_thdF tRNA 99.9 7.5E-23 1.6E-27 155.0 18.4 152 7-179 202-362 (442)
171 TIGR00487 IF-2 translation ini 99.9 7.3E-23 1.6E-27 159.4 18.3 156 6-175 85-248 (587)
172 cd01894 EngA1 EngA1 subfamily. 99.9 3.2E-23 6.9E-28 137.5 14.2 147 12-175 1-156 (157)
173 PRK11058 GTPase HflX; Provisio 99.9 5.1E-23 1.1E-27 155.1 16.3 159 8-179 197-364 (426)
174 PF08477 Miro: Miro-like prote 99.9 4.5E-23 9.8E-28 130.8 13.4 117 10-128 1-119 (119)
175 cd01895 EngA2 EngA2 subfamily. 99.9 9.1E-23 2E-27 137.4 15.7 158 8-175 2-173 (174)
176 PRK03003 GTP-binding protein D 99.9 9.6E-23 2.1E-27 156.6 17.5 155 7-178 37-200 (472)
177 PRK15467 ethanolamine utilizat 99.9 4.6E-23 9.9E-28 136.8 13.5 143 10-180 3-150 (158)
178 cd04163 Era Era subfamily. Er 99.9 1.9E-22 4.2E-27 134.8 16.1 157 8-175 3-167 (168)
179 CHL00189 infB translation init 99.9 6.2E-23 1.3E-27 162.1 15.8 162 6-176 242-409 (742)
180 PRK05306 infB translation init 99.9 9.2E-23 2E-27 162.4 15.8 160 5-175 287-450 (787)
181 cd04105 SR_beta Signal recogni 99.9 2.2E-22 4.8E-27 138.7 15.3 163 10-174 2-202 (203)
182 PRK00093 GTP-binding protein D 99.9 7E-22 1.5E-26 151.0 17.8 162 7-178 172-345 (435)
183 cd00880 Era_like Era (E. coli 99.9 3.9E-22 8.4E-27 132.3 14.0 154 13-175 1-162 (163)
184 TIGR00491 aIF-2 translation in 99.9 5.3E-22 1.1E-26 154.4 16.0 158 7-175 3-214 (590)
185 PRK09518 bifunctional cytidyla 99.9 6.7E-22 1.4E-26 158.3 17.1 163 7-179 449-623 (712)
186 PRK05433 GTP-binding protein L 99.9 1.1E-21 2.3E-26 153.7 17.7 162 7-180 6-187 (600)
187 PF10662 PduV-EutP: Ethanolami 99.9 3.6E-22 7.7E-27 127.5 11.3 136 10-173 3-142 (143)
188 cd01876 YihA_EngB The YihA (En 99.9 1.5E-21 3.3E-26 130.8 15.1 153 10-175 1-169 (170)
189 PRK00093 GTP-binding protein D 99.9 2.1E-21 4.6E-26 148.4 17.1 149 9-176 2-161 (435)
190 cd01884 EF_Tu EF-Tu subfamily. 99.9 2.1E-21 4.7E-26 132.6 14.8 150 8-165 2-171 (195)
191 KOG0074 GTP-binding ADP-ribosy 99.9 1.6E-22 3.4E-27 126.1 8.0 165 6-177 15-179 (185)
192 TIGR03594 GTPase_EngA ribosome 99.9 4.2E-21 9.1E-26 146.5 17.1 153 10-179 1-162 (429)
193 PRK04000 translation initiatio 99.9 1.7E-21 3.8E-26 146.9 14.4 170 2-178 3-202 (411)
194 TIGR03680 eif2g_arch translati 99.9 1.3E-21 2.7E-26 147.7 13.6 167 6-178 2-197 (406)
195 PRK10512 selenocysteinyl-tRNA- 99.9 4.3E-21 9.4E-26 150.5 17.0 158 10-179 2-168 (614)
196 PRK09554 feoB ferrous iron tra 99.9 7.7E-21 1.7E-25 152.1 18.6 154 8-177 3-168 (772)
197 KOG3883 Ras family small GTPas 99.9 1.8E-20 3.8E-25 118.5 16.1 168 6-179 7-177 (198)
198 TIGR00437 feoB ferrous iron tr 99.9 3.1E-21 6.7E-26 151.0 15.7 146 15-176 1-154 (591)
199 COG1160 Predicted GTPases [Gen 99.9 5.1E-21 1.1E-25 141.2 15.1 152 9-177 4-165 (444)
200 PRK10218 GTP-binding protein; 99.9 1.5E-20 3.3E-25 146.8 17.9 165 7-180 4-198 (607)
201 PRK12317 elongation factor 1-a 99.9 3.5E-21 7.6E-26 146.5 13.4 154 6-167 4-195 (425)
202 COG0218 Predicted GTPase [Gene 99.9 2.5E-20 5.5E-25 124.2 15.8 160 6-178 22-198 (200)
203 cd04168 TetM_like Tet(M)-like 99.9 9.9E-21 2.1E-25 133.1 14.3 161 10-178 1-236 (237)
204 TIGR01394 TypA_BipA GTP-bindin 99.9 7.6E-21 1.7E-25 148.5 15.1 163 9-180 2-194 (594)
205 TIGR00483 EF-1_alpha translati 99.9 3.6E-21 7.8E-26 146.4 12.6 156 5-167 4-197 (426)
206 COG1160 Predicted GTPases [Gen 99.9 1.9E-20 4.1E-25 138.3 15.8 162 7-178 177-352 (444)
207 PRK04004 translation initiatio 99.9 1.4E-20 3.1E-25 147.0 16.1 159 5-174 3-215 (586)
208 COG2229 Predicted GTPase [Gene 99.9 7.1E-20 1.5E-24 119.6 16.5 159 5-175 7-176 (187)
209 PRK09518 bifunctional cytidyla 99.9 4.6E-20 1E-24 147.8 18.2 155 8-179 275-438 (712)
210 cd01896 DRG The developmentall 99.9 3.2E-20 6.8E-25 130.4 15.2 155 10-176 2-225 (233)
211 cd04166 CysN_ATPS CysN_ATPS su 99.9 7.7E-21 1.7E-25 131.7 11.8 150 10-168 1-185 (208)
212 COG2262 HflX GTPases [General 99.9 5.5E-20 1.2E-24 134.0 16.5 160 6-179 190-358 (411)
213 COG0486 ThdF Predicted GTPase 99.9 4.3E-20 9.3E-25 136.7 16.2 154 7-179 216-378 (454)
214 KOG1423 Ras-like GTPase ERA [C 99.9 4.4E-20 9.5E-25 129.5 14.9 170 5-183 69-277 (379)
215 KOG1673 Ras GTPases [General f 99.9 2.4E-20 5.1E-25 118.2 11.9 168 7-180 19-189 (205)
216 PRK12736 elongation factor Tu; 99.9 4.8E-20 1E-24 138.7 15.8 163 6-178 10-202 (394)
217 KOG0072 GTP-binding ADP-ribosy 99.9 1.4E-21 3E-26 122.2 6.1 165 7-179 17-181 (182)
218 cd01883 EF1_alpha Eukaryotic e 99.9 7E-21 1.5E-25 132.8 10.0 149 10-166 1-194 (219)
219 PRK12735 elongation factor Tu; 99.8 6.5E-20 1.4E-24 138.1 15.8 162 6-177 10-203 (396)
220 KOG1489 Predicted GTP-binding 99.8 5.8E-20 1.3E-24 129.5 13.9 159 9-175 197-365 (366)
221 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 1.3E-20 2.9E-25 123.1 9.9 164 7-180 9-172 (216)
222 cd04165 GTPBP1_like GTPBP1-lik 99.8 3.4E-20 7.4E-25 129.3 12.7 157 10-174 1-220 (224)
223 CHL00071 tufA elongation facto 99.8 1.9E-19 4.2E-24 136.0 15.8 148 6-163 10-179 (409)
224 TIGR00485 EF-Tu translation el 99.8 1.3E-19 2.9E-24 136.4 14.6 148 6-163 10-179 (394)
225 cd04169 RF3 RF3 subfamily. Pe 99.8 4.2E-19 9E-24 126.9 16.1 115 9-131 3-137 (267)
226 COG0370 FeoB Fe2+ transport sy 99.8 2.2E-19 4.7E-24 138.3 15.1 157 8-180 3-167 (653)
227 COG0532 InfB Translation initi 99.8 4.5E-19 9.7E-24 133.1 15.5 161 6-177 3-170 (509)
228 cd04104 p47_IIGP_like p47 (47- 99.8 5.5E-19 1.2E-23 121.4 14.4 161 8-180 1-187 (197)
229 PLN00043 elongation factor 1-a 99.8 5.5E-20 1.2E-24 139.8 9.3 162 5-167 4-203 (447)
230 cd04167 Snu114p Snu114p subfam 99.8 3.5E-19 7.5E-24 123.9 12.6 113 10-130 2-136 (213)
231 PRK00049 elongation factor Tu; 99.8 1.1E-18 2.4E-23 131.4 16.1 162 6-177 10-203 (396)
232 KOG4423 GTP-binding protein-li 99.8 1.4E-21 3E-26 127.3 -0.1 174 6-180 23-197 (229)
233 cd01886 EF-G Elongation factor 99.8 1.1E-18 2.3E-23 124.9 14.3 112 10-131 1-130 (270)
234 cd04170 EF-G_bact Elongation f 99.8 1.4E-18 3.1E-23 124.8 14.7 115 10-132 1-131 (268)
235 PTZ00327 eukaryotic translatio 99.8 6.4E-19 1.4E-23 133.8 13.2 168 5-179 31-235 (460)
236 COG1084 Predicted GTPase [Gene 99.8 4E-18 8.7E-23 121.0 16.2 162 6-179 166-338 (346)
237 KOG0462 Elongation factor-type 99.8 3.2E-18 6.9E-23 128.4 15.7 166 6-181 58-239 (650)
238 PLN03126 Elongation factor Tu; 99.8 2.9E-18 6.3E-23 131.0 15.9 149 5-163 78-248 (478)
239 PRK05124 cysN sulfate adenylyl 99.8 1.5E-18 3.2E-23 133.0 14.1 154 6-168 25-216 (474)
240 PLN03127 Elongation factor Tu; 99.8 2.9E-18 6.4E-23 130.3 15.6 162 6-177 59-252 (447)
241 PTZ00141 elongation factor 1- 99.8 1.4E-18 3E-23 132.3 13.8 154 5-167 4-203 (446)
242 COG0536 Obg Predicted GTPase [ 99.8 2E-18 4.4E-23 123.0 13.7 166 10-180 161-336 (369)
243 cd01850 CDC_Septin CDC/Septin. 99.8 4.1E-18 8.9E-23 122.3 14.9 145 6-160 2-185 (276)
244 TIGR02034 CysN sulfate adenyly 99.8 2E-18 4.3E-23 130.4 13.0 150 9-167 1-187 (406)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.8 5.3E-19 1.1E-23 122.8 9.0 171 10-184 1-183 (232)
246 cd01885 EF2 EF2 (for archaea a 99.8 4.3E-18 9.3E-23 118.3 13.6 113 10-130 2-138 (222)
247 KOG1145 Mitochondrial translat 99.8 9.1E-18 2E-22 126.0 14.6 159 6-176 151-315 (683)
248 cd01899 Ygr210 Ygr210 subfamil 99.8 2.5E-17 5.3E-22 120.0 16.1 164 11-180 1-272 (318)
249 PRK00741 prfC peptide chain re 99.8 8.2E-18 1.8E-22 130.1 13.9 117 7-131 9-145 (526)
250 COG1163 DRG Predicted GTPase [ 99.8 4.7E-17 1E-21 115.3 16.2 159 6-177 61-289 (365)
251 KOG0077 Vesicle coat complex C 99.8 1.5E-18 3.3E-23 111.2 7.9 157 8-176 20-192 (193)
252 COG0481 LepA Membrane GTPase L 99.8 1.5E-17 3.3E-22 123.0 14.1 168 6-183 7-192 (603)
253 PRK05506 bifunctional sulfate 99.8 7.8E-18 1.7E-22 133.7 13.3 155 6-167 22-211 (632)
254 KOG1707 Predicted Ras related/ 99.8 2.1E-18 4.6E-23 130.1 9.4 167 7-178 8-176 (625)
255 COG3596 Predicted GTPase [Gene 99.8 5.2E-18 1.1E-22 117.8 10.5 165 6-179 37-224 (296)
256 COG5256 TEF1 Translation elong 99.8 2.6E-18 5.6E-23 125.4 8.6 159 5-167 4-201 (428)
257 PRK13351 elongation factor G; 99.8 1.5E-17 3.4E-22 133.3 13.7 118 7-132 7-140 (687)
258 TIGR00503 prfC peptide chain r 99.8 2.3E-17 5E-22 127.7 13.6 118 6-131 9-146 (527)
259 cd01852 AIG1 AIG1 (avrRpt2-ind 99.8 5.5E-17 1.2E-21 111.5 14.0 166 9-181 1-188 (196)
260 PF01926 MMR_HSR1: 50S ribosom 99.7 1.1E-16 2.5E-21 100.9 12.4 106 10-126 1-116 (116)
261 PF09439 SRPRB: Signal recogni 99.7 1.4E-17 3E-22 111.1 7.7 119 9-132 4-127 (181)
262 COG4917 EutP Ethanolamine util 99.7 5E-17 1.1E-21 99.6 8.3 138 10-175 3-144 (148)
263 PRK12739 elongation factor G; 99.7 3.2E-16 6.9E-21 125.6 15.3 117 6-132 6-140 (691)
264 PRK09602 translation-associate 99.7 9E-16 1.9E-20 115.0 16.1 83 9-91 2-113 (396)
265 KOG0090 Signal recognition par 99.7 1.1E-16 2.3E-21 107.1 9.6 163 6-175 36-237 (238)
266 TIGR00484 EF-G translation elo 99.7 2.7E-16 5.8E-21 126.0 12.9 116 7-132 9-142 (689)
267 KOG0461 Selenocysteine-specifi 99.7 1.4E-15 3E-20 108.9 14.5 169 6-183 5-199 (522)
268 KOG1191 Mitochondrial GTPase [ 99.7 2.6E-16 5.5E-21 117.0 11.2 170 6-179 266-452 (531)
269 PRK09866 hypothetical protein; 99.7 2.4E-15 5.2E-20 116.2 15.8 111 57-175 230-351 (741)
270 PRK00007 elongation factor G; 99.7 9.7E-16 2.1E-20 122.8 12.5 146 6-162 8-171 (693)
271 KOG1490 GTP-binding protein CR 99.7 3.8E-16 8.2E-21 116.3 9.2 167 6-179 166-343 (620)
272 COG5257 GCD11 Translation init 99.6 1.1E-15 2.5E-20 108.3 9.2 171 6-182 8-207 (415)
273 PRK12740 elongation factor G; 99.6 4.9E-15 1.1E-19 118.8 13.9 109 14-132 1-127 (668)
274 PRK14845 translation initiatio 99.6 6.8E-15 1.5E-19 120.5 14.6 146 20-176 473-672 (1049)
275 KOG1532 GTPase XAB1, interacts 99.6 9.1E-16 2E-20 106.6 6.6 120 57-179 116-266 (366)
276 PTZ00258 GTP-binding protein; 99.6 2.9E-14 6.2E-19 106.0 14.7 87 5-91 18-126 (390)
277 TIGR00490 aEF-2 translation el 99.6 5E-15 1.1E-19 119.1 11.5 119 6-132 17-153 (720)
278 PRK13768 GTPase; Provisional 99.6 3.8E-15 8.3E-20 105.9 9.4 117 58-179 98-249 (253)
279 COG1217 TypA Predicted membran 99.6 3.2E-14 6.9E-19 105.5 13.9 166 8-181 5-199 (603)
280 KOG0458 Elongation factor 1 al 99.6 5.5E-15 1.2E-19 111.9 10.0 159 6-167 175-372 (603)
281 PF04548 AIG1: AIG1 family; I 99.6 1.9E-14 4.2E-19 99.9 12.1 166 9-181 1-190 (212)
282 COG2895 CysN GTPases - Sulfate 99.6 6.1E-15 1.3E-19 105.8 9.5 151 6-166 4-192 (431)
283 PRK09435 membrane ATPase/prote 99.6 5.6E-14 1.2E-18 102.7 13.2 108 56-178 148-261 (332)
284 cd01853 Toc34_like Toc34-like 99.6 5.9E-14 1.3E-18 99.2 12.9 123 6-132 29-164 (249)
285 KOG1707 Predicted Ras related/ 99.6 1E-13 2.3E-18 105.1 14.6 165 5-180 422-586 (625)
286 PRK07560 elongation factor EF- 99.6 5.5E-14 1.2E-18 113.4 13.9 118 6-131 18-153 (731)
287 KOG3905 Dynein light intermedi 99.6 6.7E-14 1.5E-18 99.6 12.5 165 9-177 53-290 (473)
288 cd00066 G-alpha G protein alph 99.6 1.1E-13 2.5E-18 101.4 13.8 126 55-180 159-314 (317)
289 PLN00116 translation elongatio 99.6 2.3E-14 5E-19 116.9 10.8 118 5-130 16-163 (843)
290 TIGR00101 ureG urease accessor 99.6 6.8E-14 1.5E-18 96.0 11.5 104 57-177 92-196 (199)
291 cd01882 BMS1 Bms1. Bms1 is an 99.6 1.4E-13 3E-18 96.4 13.1 142 6-163 37-182 (225)
292 PF00735 Septin: Septin; Inte 99.6 6.9E-14 1.5E-18 100.5 11.4 142 7-158 3-182 (281)
293 KOG1144 Translation initiation 99.6 5.6E-14 1.2E-18 109.2 11.2 160 7-177 474-687 (1064)
294 COG0378 HypB Ni2+-binding GTPa 99.5 4.1E-14 8.9E-19 94.0 8.7 149 8-176 13-200 (202)
295 PF03029 ATP_bind_1: Conserved 99.5 9.2E-15 2E-19 102.7 5.4 114 58-176 92-236 (238)
296 PTZ00416 elongation factor 2; 99.5 6E-14 1.3E-18 114.4 10.7 117 6-130 17-157 (836)
297 COG3276 SelB Selenocysteine-sp 99.5 1.3E-13 2.9E-18 101.7 11.1 154 10-177 2-162 (447)
298 TIGR00991 3a0901s02IAP34 GTP-b 99.5 3.6E-13 7.9E-18 96.8 12.9 124 5-132 35-168 (313)
299 KOG0410 Predicted GTP binding 99.5 7E-14 1.5E-18 99.4 8.9 156 8-178 178-342 (410)
300 PRK09601 GTP-binding protein Y 99.5 1.1E-12 2.4E-17 96.7 15.3 83 9-91 3-107 (364)
301 smart00275 G_alpha G protein a 99.5 4.3E-13 9.2E-18 99.2 12.6 125 56-180 183-337 (342)
302 PF05049 IIGP: Interferon-indu 99.5 3.3E-13 7.1E-18 99.5 10.5 164 6-180 33-221 (376)
303 TIGR00750 lao LAO/AO transport 99.5 1.1E-12 2.4E-17 95.6 12.6 107 56-177 126-238 (300)
304 TIGR00073 hypB hydrogenase acc 99.5 1.2E-12 2.6E-17 90.7 12.2 154 6-176 20-206 (207)
305 KOG3886 GTP-binding protein [S 99.5 1.8E-13 3.9E-18 93.0 7.5 166 9-178 5-179 (295)
306 PF05783 DLIC: Dynein light in 99.5 2.5E-12 5.4E-17 98.1 14.4 168 9-180 26-267 (472)
307 COG4108 PrfC Peptide chain rel 99.5 8.3E-13 1.8E-17 97.4 10.7 117 8-132 12-148 (528)
308 PF00350 Dynamin_N: Dynamin fa 99.4 1.4E-12 3E-17 87.5 9.9 63 58-127 102-168 (168)
309 TIGR02836 spore_IV_A stage IV 99.4 5.2E-12 1.1E-16 93.5 13.2 156 6-173 15-233 (492)
310 COG5019 CDC3 Septin family pro 99.4 1.6E-11 3.4E-16 89.1 14.2 144 4-156 19-200 (373)
311 COG0050 TufB GTPases - transla 99.4 7.2E-12 1.6E-16 88.3 11.9 166 6-181 10-205 (394)
312 KOG0082 G-protein alpha subuni 99.4 1.1E-11 2.3E-16 90.5 12.9 130 51-180 189-347 (354)
313 TIGR00157 ribosome small subun 99.4 3E-12 6.4E-17 90.7 9.9 96 68-174 24-120 (245)
314 KOG1486 GTP-binding protein DR 99.4 1E-10 2.2E-15 80.9 15.5 89 6-96 60-155 (364)
315 COG0480 FusA Translation elong 99.4 9E-12 2E-16 98.9 11.7 120 6-133 8-144 (697)
316 PRK10463 hydrogenase nickel in 99.3 6.5E-12 1.4E-16 89.8 8.7 57 117-175 230-287 (290)
317 PF03308 ArgK: ArgK protein; 99.3 1.3E-12 2.9E-17 91.0 5.0 152 7-176 28-229 (266)
318 smart00053 DYNc Dynamin, GTPas 99.3 2.7E-11 5.8E-16 85.0 11.6 69 57-132 125-207 (240)
319 KOG2655 Septin family protein 99.3 6.3E-11 1.4E-15 86.6 13.8 145 5-160 18-200 (366)
320 KOG1547 Septin CDC10 and relat 99.3 5.8E-11 1.3E-15 81.5 12.7 148 6-163 44-229 (336)
321 smart00010 small_GTPase Small 99.3 2.2E-11 4.7E-16 77.4 10.1 114 9-166 1-115 (124)
322 COG0012 Predicted GTPase, prob 99.3 8.8E-11 1.9E-15 85.8 13.5 84 8-91 2-108 (372)
323 TIGR00993 3a0901s04IAP86 chlor 99.3 5.9E-11 1.3E-15 92.6 12.3 121 7-132 117-251 (763)
324 COG1703 ArgK Putative periplas 99.3 2.5E-11 5.4E-16 86.0 8.8 157 6-177 49-254 (323)
325 cd01900 YchF YchF subfamily. 99.3 2E-11 4.4E-16 87.3 8.0 81 11-91 1-103 (274)
326 KOG0468 U5 snRNP-specific prot 99.3 5.2E-11 1.1E-15 92.2 10.0 118 4-129 124-261 (971)
327 COG5258 GTPBP1 GTPase [General 99.2 1.3E-10 2.8E-15 84.9 9.7 164 7-179 116-340 (527)
328 KOG0466 Translation initiation 99.2 6.9E-12 1.5E-16 88.9 2.2 113 57-179 125-243 (466)
329 KOG1143 Predicted translation 99.2 4.3E-10 9.2E-15 82.0 9.8 157 6-172 165-383 (591)
330 KOG0460 Mitochondrial translat 99.1 4.5E-10 9.8E-15 80.8 9.2 166 6-179 52-247 (449)
331 KOG3887 Predicted small GTPase 99.1 9.4E-10 2E-14 75.8 9.3 171 8-183 27-208 (347)
332 cd01859 MJ1464 MJ1464. This f 99.1 7.5E-10 1.6E-14 73.4 8.7 95 71-178 3-97 (156)
333 KOG2486 Predicted GTPase [Gene 99.1 5.3E-10 1.1E-14 78.4 7.6 156 5-175 133-314 (320)
334 cd01855 YqeH YqeH. YqeH is an 99.1 7.3E-10 1.6E-14 75.8 8.2 98 67-177 21-125 (190)
335 KOG0463 GTP-binding protein GP 99.1 8.7E-10 1.9E-14 80.6 8.3 159 6-172 131-353 (641)
336 PF00503 G-alpha: G-protein al 99.0 6.6E-10 1.4E-14 84.1 6.1 122 55-176 234-389 (389)
337 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.1E-09 6.7E-14 77.2 9.2 89 74-174 72-161 (287)
338 PRK12289 GTPase RsgA; Reviewed 99.0 4.6E-09 1E-13 77.9 10.0 89 74-174 83-172 (352)
339 PRK00098 GTPase RsgA; Reviewed 99.0 4.7E-09 1E-13 76.7 8.5 86 77-173 77-163 (298)
340 KOG0705 GTPase-activating prot 99.0 3.5E-09 7.6E-14 80.6 7.8 163 7-179 29-191 (749)
341 KOG0467 Translation elongation 99.0 4.7E-09 1E-13 82.6 8.6 115 6-128 7-135 (887)
342 KOG1954 Endocytosis/signaling 98.9 8.2E-09 1.8E-13 75.3 9.3 116 8-132 58-226 (532)
343 TIGR00092 GTP-binding protein 98.9 4.5E-09 9.8E-14 77.8 8.1 83 9-91 3-108 (368)
344 cd01857 HSR1_MMR1 HSR1/MMR1. 98.9 2.8E-09 6E-14 69.4 6.2 54 10-67 85-138 (141)
345 cd04178 Nucleostemin_like Nucl 98.9 4.4E-09 9.6E-14 70.6 6.8 54 8-66 117-171 (172)
346 cd01858 NGP_1 NGP-1. Autoanti 98.9 5.9E-09 1.3E-13 69.1 7.1 55 7-66 101-156 (157)
347 PRK12288 GTPase RsgA; Reviewed 98.9 1.5E-08 3.3E-13 75.2 9.7 88 78-174 118-205 (347)
348 KOG1491 Predicted GTP-binding 98.9 7.6E-09 1.6E-13 74.6 7.6 87 5-91 17-125 (391)
349 COG5192 BMS1 GTP-binding prote 98.9 2.6E-08 5.6E-13 76.6 10.6 141 6-162 67-211 (1077)
350 KOG1487 GTP-binding protein DR 98.9 5E-08 1.1E-12 68.1 11.0 87 9-97 60-153 (358)
351 TIGR03597 GTPase_YqeH ribosome 98.9 1.4E-08 3E-13 76.1 8.2 96 67-175 50-151 (360)
352 cd01856 YlqF YlqF. Proteins o 98.8 2.4E-08 5.3E-13 67.2 8.0 93 70-177 9-101 (171)
353 cd01858 NGP_1 NGP-1. Autoanti 98.8 3.2E-08 6.9E-13 65.7 8.0 91 76-176 4-94 (157)
354 KOG0465 Mitochondrial elongati 98.8 1.8E-08 3.9E-13 77.7 7.5 118 7-132 38-171 (721)
355 KOG0447 Dynamin-like GTP bindi 98.8 9.2E-08 2E-12 73.4 11.0 134 6-147 306-507 (980)
356 cd01856 YlqF YlqF. Proteins o 98.8 2E-08 4.4E-13 67.5 6.7 56 7-66 114-169 (171)
357 cd01855 YqeH YqeH. YqeH is an 98.8 1.4E-08 3E-13 69.5 6.0 53 9-66 128-189 (190)
358 KOG3859 Septins (P-loop GTPase 98.8 4.2E-09 9.1E-14 74.0 3.3 119 6-133 40-192 (406)
359 cd01851 GBP Guanylate-binding 98.8 1.7E-07 3.7E-12 65.7 11.0 87 6-92 5-103 (224)
360 cd01849 YlqF_related_GTPase Yl 98.8 6.5E-08 1.4E-12 64.0 8.3 84 82-176 1-84 (155)
361 KOG0448 Mitofusin 1 GTPase, in 98.8 3.2E-07 6.8E-12 71.9 12.9 145 6-160 107-309 (749)
362 TIGR03596 GTPase_YlqF ribosome 98.8 5.4E-08 1.2E-12 70.4 8.3 101 64-179 4-105 (276)
363 TIGR03596 GTPase_YlqF ribosome 98.7 4.2E-08 9.2E-13 71.0 7.2 56 7-67 117-173 (276)
364 cd01859 MJ1464 MJ1464. This f 98.7 5E-08 1.1E-12 64.6 7.0 56 7-66 100-155 (156)
365 PRK09563 rbgA GTPase YlqF; Rev 98.7 6.1E-08 1.3E-12 70.5 7.9 56 7-67 120-176 (287)
366 COG1161 Predicted GTPases [Gen 98.7 3.7E-08 8.1E-13 72.6 6.6 55 8-66 132-186 (322)
367 PF03193 DUF258: Protein of un 98.7 2.5E-08 5.5E-13 65.6 4.8 60 9-71 36-101 (161)
368 KOG0085 G protein subunit Galp 98.7 1.9E-08 4.1E-13 69.1 4.2 126 52-180 194-352 (359)
369 PRK10416 signal recognition pa 98.7 1.9E-07 4.2E-12 68.6 9.7 96 56-170 196-303 (318)
370 cd03112 CobW_like The function 98.7 1E-07 2.2E-12 63.2 7.4 21 11-31 3-23 (158)
371 TIGR03348 VI_IcmF type VI secr 98.7 8.5E-08 1.8E-12 81.6 8.4 116 11-132 114-258 (1169)
372 cd01849 YlqF_related_GTPase Yl 98.7 6.1E-08 1.3E-12 64.2 6.1 55 7-66 99-154 (155)
373 PRK14974 cell division protein 98.7 3.8E-08 8.2E-13 72.6 5.4 94 57-170 223-323 (336)
374 KOG0464 Elongation factor G [T 98.7 1.8E-08 3.9E-13 74.7 3.6 118 7-132 36-169 (753)
375 TIGR00064 ftsY signal recognit 98.6 7.1E-07 1.5E-11 64.3 11.2 96 56-170 154-261 (272)
376 KOG0459 Polypeptide release fa 98.6 4.7E-08 1E-12 72.1 4.8 161 5-170 76-279 (501)
377 TIGR01425 SRP54_euk signal rec 98.6 1.4E-06 3E-11 66.2 12.5 67 56-132 182-254 (429)
378 PRK09563 rbgA GTPase YlqF; Rev 98.6 2.1E-07 4.5E-12 67.7 7.9 101 64-179 7-108 (287)
379 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.5E-07 3.3E-12 61.3 6.5 77 75-164 6-84 (141)
380 KOG0099 G protein subunit Galp 98.6 1.7E-07 3.6E-12 65.7 6.3 75 53-130 198-282 (379)
381 PF09547 Spore_IV_A: Stage IV 98.6 2.8E-06 6.1E-11 63.7 12.2 155 7-173 16-233 (492)
382 PRK01889 GTPase RsgA; Reviewed 98.5 9E-07 2E-11 66.3 9.0 85 77-173 109-193 (356)
383 PRK12288 GTPase RsgA; Reviewed 98.5 3.2E-07 7E-12 68.2 6.5 58 11-71 208-271 (347)
384 PRK13796 GTPase YqeH; Provisio 98.5 3.7E-07 8.1E-12 68.5 5.7 54 9-67 161-220 (365)
385 PRK13796 GTPase YqeH; Provisio 98.5 1.6E-06 3.5E-11 65.1 9.1 93 69-175 58-157 (365)
386 TIGR00157 ribosome small subun 98.5 4.4E-07 9.6E-12 64.5 5.8 23 10-32 122-144 (245)
387 TIGR03597 GTPase_YqeH ribosome 98.5 5.7E-07 1.2E-11 67.5 6.6 54 9-67 155-214 (360)
388 COG1618 Predicted nucleotide k 98.4 3.3E-05 7.1E-10 50.5 13.6 148 7-178 4-177 (179)
389 PRK12289 GTPase RsgA; Reviewed 98.4 4.3E-07 9.3E-12 67.6 5.7 54 11-67 175-234 (352)
390 KOG1534 Putative transcription 98.4 1.9E-06 4.1E-11 58.6 7.1 112 58-177 99-251 (273)
391 COG1162 Predicted GTPases [Gen 98.3 1.2E-06 2.5E-11 63.1 5.3 59 10-71 166-230 (301)
392 COG3523 IcmF Type VI protein s 98.3 2.1E-06 4.6E-11 72.1 7.4 117 11-132 128-271 (1188)
393 PRK14722 flhF flagellar biosyn 98.3 7.4E-06 1.6E-10 61.4 9.1 23 9-31 138-160 (374)
394 PF00448 SRP54: SRP54-type pro 98.3 3.9E-06 8.5E-11 57.6 7.0 89 57-165 84-179 (196)
395 cd01854 YjeQ_engC YjeQ/EngC. 98.3 2.6E-06 5.7E-11 62.0 6.1 59 9-70 162-226 (287)
396 PRK00771 signal recognition pa 98.3 1.3E-06 2.9E-11 66.7 4.7 86 57-159 176-267 (437)
397 cd03115 SRP The signal recogni 98.2 1.2E-05 2.7E-10 54.1 8.6 67 56-132 82-154 (173)
398 PF02492 cobW: CobW/HypB/UreG, 98.2 4.1E-06 8.8E-11 56.7 6.1 87 57-155 85-177 (178)
399 PRK00098 GTPase RsgA; Reviewed 98.2 3.3E-06 7.1E-11 61.8 5.9 23 10-32 166-188 (298)
400 PRK12727 flagellar biosynthesi 98.2 3.2E-05 7E-10 60.2 11.4 91 56-165 428-523 (559)
401 cd03114 ArgK-like The function 98.2 1.8E-05 3.9E-10 51.9 8.7 58 56-128 91-148 (148)
402 KOG0469 Elongation factor 2 [T 98.2 4.5E-06 9.7E-11 63.8 6.3 119 4-130 15-163 (842)
403 PRK05703 flhF flagellar biosyn 98.2 4.2E-05 9.2E-10 58.7 11.5 91 56-165 299-396 (424)
404 COG0523 Putative GTPases (G3E 98.2 5.1E-05 1.1E-09 56.0 11.5 90 57-159 85-184 (323)
405 cd03110 Fer4_NifH_child This p 98.2 0.00013 2.8E-09 49.4 12.9 85 55-155 91-175 (179)
406 TIGR00959 ffh signal recogniti 98.2 1E-05 2.2E-10 61.8 7.8 87 56-159 182-274 (428)
407 PRK10867 signal recognition pa 98.2 1.2E-05 2.6E-10 61.5 8.1 87 56-159 183-275 (433)
408 PF03266 NTPase_1: NTPase; In 98.2 2.3E-05 5E-10 52.5 8.5 22 10-31 1-22 (168)
409 PRK14721 flhF flagellar biosyn 98.1 2.3E-05 5.1E-10 59.6 9.0 23 9-31 192-214 (420)
410 PRK11889 flhF flagellar biosyn 98.1 6.3E-05 1.4E-09 56.6 10.9 134 8-158 241-411 (436)
411 PRK11537 putative GTP-binding 98.1 9E-05 2E-09 54.7 11.5 23 9-31 5-27 (318)
412 KOG1424 Predicted GTP-binding 98.0 7.2E-06 1.6E-10 62.6 4.7 54 8-66 314-368 (562)
413 PRK14723 flhF flagellar biosyn 98.0 4.2E-05 9.1E-10 62.1 9.2 139 10-165 187-362 (767)
414 KOG0780 Signal recognition par 98.0 3.6E-05 7.7E-10 57.1 7.9 119 4-132 97-255 (483)
415 PRK12723 flagellar biosynthesi 98.0 0.00014 3.1E-09 55.0 11.3 91 56-165 254-351 (388)
416 PF05621 TniB: Bacterial TniB 98.0 5.3E-05 1.1E-09 54.8 8.5 107 4-127 57-190 (302)
417 PRK06995 flhF flagellar biosyn 98.0 4.4E-05 9.5E-10 59.1 8.7 21 10-30 258-278 (484)
418 COG1162 Predicted GTPases [Gen 98.0 7.5E-05 1.6E-09 54.0 9.0 90 75-174 74-164 (301)
419 PF06858 NOG1: Nucleolar GTP-b 98.0 4.3E-05 9.3E-10 40.9 5.8 45 79-128 12-58 (58)
420 COG1419 FlhF Flagellar GTP-bin 98.0 0.00011 2.4E-09 55.1 9.6 132 9-158 204-372 (407)
421 cd02042 ParA ParA and ParB of 97.9 5.9E-05 1.3E-09 46.3 6.8 82 11-104 2-84 (104)
422 PRK13695 putative NTPase; Prov 97.9 0.00096 2.1E-08 45.0 13.3 23 9-31 1-23 (174)
423 KOG2485 Conserved ATP/GTP bind 97.9 1.4E-05 3.1E-10 57.5 4.4 59 6-66 141-205 (335)
424 PRK12726 flagellar biosynthesi 97.9 7.8E-05 1.7E-09 55.9 7.6 22 9-30 207-228 (407)
425 PRK12724 flagellar biosynthesi 97.9 4.9E-05 1.1E-09 57.7 6.6 22 9-30 224-245 (432)
426 KOG2484 GTPase [General functi 97.9 1.5E-05 3.3E-10 59.1 3.7 56 7-66 251-306 (435)
427 PF13207 AAA_17: AAA domain; P 97.9 1.5E-05 3.4E-10 50.2 3.3 22 10-31 1-22 (121)
428 PF03215 Rad17: Rad17 cell cyc 97.9 0.00025 5.3E-09 55.8 10.4 23 11-33 48-70 (519)
429 cd02038 FleN-like FleN is a me 97.9 0.00033 7.1E-09 45.5 9.4 106 13-130 5-110 (139)
430 KOG1533 Predicted GTPase [Gene 97.8 3.1E-05 6.6E-10 53.7 4.6 21 8-28 2-22 (290)
431 PRK08118 topology modulation p 97.8 1.7E-05 3.6E-10 53.2 3.3 24 9-32 2-25 (167)
432 COG0563 Adk Adenylate kinase a 97.8 1.8E-05 3.9E-10 53.5 3.0 22 10-31 2-23 (178)
433 TIGR02475 CobW cobalamin biosy 97.8 0.00087 1.9E-08 50.1 11.8 21 11-31 7-27 (341)
434 PF13555 AAA_29: P-loop contai 97.8 3.1E-05 6.6E-10 42.5 3.1 22 10-31 25-46 (62)
435 PRK07261 topology modulation p 97.8 2.5E-05 5.3E-10 52.6 3.3 22 10-31 2-23 (171)
436 COG1116 TauB ABC-type nitrate/ 97.8 3.3E-05 7.1E-10 54.2 3.6 22 11-32 32-53 (248)
437 PF13671 AAA_33: AAA domain; P 97.7 2.8E-05 6E-10 50.5 3.1 22 11-32 2-23 (143)
438 PF05729 NACHT: NACHT domain 97.7 0.0001 2.2E-09 48.9 5.8 22 11-32 3-24 (166)
439 PRK06731 flhF flagellar biosyn 97.7 0.0004 8.7E-09 50.0 8.8 133 9-158 76-245 (270)
440 cd00009 AAA The AAA+ (ATPases 97.7 0.00045 9.8E-09 44.6 8.5 24 9-32 20-43 (151)
441 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00044 9.5E-09 41.4 7.6 69 11-93 2-71 (99)
442 cd02019 NK Nucleoside/nucleoti 97.7 5.1E-05 1.1E-09 42.9 3.2 22 11-32 2-23 (69)
443 KOG2423 Nucleolar GTPase [Gene 97.7 2.3E-05 4.9E-10 58.3 2.1 83 5-95 304-389 (572)
444 COG1126 GlnQ ABC-type polar am 97.7 5.5E-05 1.2E-09 52.0 3.7 23 10-32 30-52 (240)
445 PF13521 AAA_28: AAA domain; P 97.7 3.4E-05 7.3E-10 51.5 2.5 22 10-31 1-22 (163)
446 COG1136 SalX ABC-type antimicr 97.6 6.2E-05 1.3E-09 52.4 3.7 23 10-32 33-55 (226)
447 PF04665 Pox_A32: Poxvirus A32 97.6 6.7E-05 1.5E-09 52.9 3.3 27 6-32 11-37 (241)
448 PF00005 ABC_tran: ABC transpo 97.6 6.3E-05 1.4E-09 48.5 3.0 23 10-32 13-35 (137)
449 TIGR00150 HI0065_YjeE ATPase, 97.6 0.00047 1E-08 44.2 6.8 23 10-32 24-46 (133)
450 PRK06217 hypothetical protein; 97.6 7.3E-05 1.6E-09 50.9 3.2 23 9-31 2-24 (183)
451 PF00004 AAA: ATPase family as 97.6 8.2E-05 1.8E-09 47.5 3.2 22 11-32 1-22 (132)
452 KOG3347 Predicted nucleotide k 97.6 6.9E-05 1.5E-09 48.4 2.8 26 6-31 5-30 (176)
453 COG0194 Gmk Guanylate kinase [ 97.5 5.6E-05 1.2E-09 50.7 2.2 24 9-32 5-28 (191)
454 PRK03839 putative kinase; Prov 97.5 8.2E-05 1.8E-09 50.4 3.1 22 10-31 2-23 (180)
455 COG3839 MalK ABC-type sugar tr 97.5 9.9E-05 2.1E-09 54.5 3.7 22 11-32 32-53 (338)
456 PRK05480 uridine/cytidine kina 97.5 0.00012 2.6E-09 50.9 4.0 25 7-31 5-29 (209)
457 smart00382 AAA ATPases associa 97.5 9.9E-05 2.2E-09 47.3 3.4 26 9-34 3-28 (148)
458 COG3640 CooC CO dehydrogenase 97.5 0.00075 1.6E-08 47.1 7.6 48 76-130 151-198 (255)
459 PF03205 MobB: Molybdopterin g 97.5 0.00011 2.3E-09 47.8 3.3 23 10-32 2-24 (140)
460 KOG4273 Uncharacterized conser 97.5 0.00085 1.8E-08 47.2 7.8 113 8-131 4-123 (418)
461 PF13238 AAA_18: AAA domain; P 97.5 0.0001 2.2E-09 46.9 3.1 21 11-31 1-21 (129)
462 COG0541 Ffh Signal recognition 97.5 0.00023 4.9E-09 53.8 5.3 24 6-29 98-121 (451)
463 PRK14530 adenylate kinase; Pro 97.5 0.00011 2.3E-09 51.4 3.5 23 9-31 4-26 (215)
464 PRK10078 ribose 1,5-bisphospho 97.5 0.00011 2.4E-09 50.1 3.3 23 10-32 4-26 (186)
465 cd00071 GMPK Guanosine monopho 97.5 0.00011 2.4E-09 47.5 3.2 21 11-31 2-22 (137)
466 cd01130 VirB11-like_ATPase Typ 97.5 0.00011 2.5E-09 50.1 3.3 24 9-32 26-49 (186)
467 cd00820 PEPCK_HprK Phosphoenol 97.5 0.00011 2.4E-09 45.2 2.8 20 10-29 17-36 (107)
468 cd04178 Nucleostemin_like Nucl 97.5 0.00042 9.1E-09 46.6 6.0 45 82-132 1-45 (172)
469 TIGR02322 phosphon_PhnN phosph 97.5 0.00011 2.4E-09 49.7 3.2 23 10-32 3-25 (179)
470 COG1117 PstB ABC-type phosphat 97.5 8.8E-05 1.9E-09 51.0 2.6 20 11-30 36-55 (253)
471 KOG0052 Translation elongation 97.5 0.00011 2.4E-09 54.6 3.3 128 5-133 4-158 (391)
472 PRK13949 shikimate kinase; Pro 97.5 0.00013 2.8E-09 49.0 3.3 22 10-31 3-24 (169)
473 PTZ00088 adenylate kinase 1; P 97.5 0.00011 2.5E-09 51.7 3.2 25 7-31 5-29 (229)
474 cd01131 PilT Pilus retraction 97.5 0.00065 1.4E-08 46.8 6.9 22 11-32 4-25 (198)
475 COG1120 FepC ABC-type cobalami 97.5 0.00011 2.3E-09 52.3 3.0 21 11-31 31-51 (258)
476 PRK14737 gmk guanylate kinase; 97.5 0.00016 3.4E-09 49.3 3.7 25 8-32 4-28 (186)
477 PRK14738 gmk guanylate kinase; 97.4 0.00018 4E-09 49.9 4.0 27 6-32 11-37 (206)
478 TIGR00235 udk uridine kinase. 97.4 0.00017 3.7E-09 50.0 3.8 24 8-31 6-29 (207)
479 PRK14531 adenylate kinase; Pro 97.4 0.00015 3.3E-09 49.3 3.4 23 9-31 3-25 (183)
480 cd02023 UMPK Uridine monophosp 97.4 0.00014 3E-09 50.1 3.1 21 11-31 2-22 (198)
481 PRK05057 aroK shikimate kinase 97.4 0.00019 4.2E-09 48.3 3.7 23 9-31 5-27 (172)
482 PF07728 AAA_5: AAA domain (dy 97.4 0.00016 3.6E-09 46.7 3.3 23 10-32 1-23 (139)
483 PRK10751 molybdopterin-guanine 97.4 0.00019 4.1E-09 48.1 3.6 25 8-32 6-30 (173)
484 TIGR01360 aden_kin_iso1 adenyl 97.4 0.00014 3.1E-09 49.5 3.1 23 9-31 4-26 (188)
485 TIGR03263 guanyl_kin guanylate 97.4 0.00014 3.1E-09 49.2 3.1 23 10-32 3-25 (180)
486 KOG0446 Vacuolar sorting prote 97.4 3.5E-05 7.6E-10 61.9 0.0 71 57-133 132-215 (657)
487 PF11111 CENP-M: Centromere pr 97.4 0.016 3.6E-07 38.6 13.3 137 7-177 14-153 (176)
488 COG3840 ThiQ ABC-type thiamine 97.4 0.00023 5E-09 47.8 3.7 24 10-33 27-50 (231)
489 cd03238 ABC_UvrA The excision 97.4 0.00017 3.7E-09 48.7 3.2 22 9-30 22-43 (176)
490 PF02367 UPF0079: Uncharacteri 97.4 0.00076 1.7E-08 42.6 5.9 23 10-32 17-39 (123)
491 KOG3929 Uncharacterized conser 97.4 8.4E-05 1.8E-09 52.3 1.7 151 7-161 44-236 (363)
492 PRK07429 phosphoribulokinase; 97.4 0.00024 5.1E-09 52.7 4.1 31 1-31 1-31 (327)
493 PRK08233 hypothetical protein; 97.4 0.00021 4.5E-09 48.4 3.5 24 9-32 4-27 (182)
494 COG2804 PulE Type II secretory 97.4 0.001 2.2E-08 51.4 7.4 85 10-98 260-344 (500)
495 COG3842 PotA ABC-type spermidi 97.4 0.0002 4.4E-09 53.2 3.7 23 11-33 34-56 (352)
496 cd03222 ABC_RNaseL_inhibitor T 97.4 0.00024 5.2E-09 48.0 3.7 23 10-32 27-49 (177)
497 TIGR02782 TrbB_P P-type conjug 97.4 0.00095 2.1E-08 49.0 7.1 23 9-31 133-155 (299)
498 PRK14532 adenylate kinase; Pro 97.4 0.00018 3.8E-09 49.1 3.1 23 10-32 2-24 (188)
499 COG4525 TauB ABC-type taurine 97.4 0.00017 3.7E-09 49.0 2.9 23 10-32 33-55 (259)
500 PRK13833 conjugal transfer pro 97.4 0.001 2.2E-08 49.2 7.1 24 9-32 145-168 (323)
No 1
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=1.7e-40 Score=214.59 Aligned_cols=181 Identities=82% Similarity=1.265 Sum_probs=173.0
Q ss_pred CCc-cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc
Q 029929 1 MAS-RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR 79 (185)
Q Consensus 1 m~~-~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~ 79 (185)
|+. +++..++|+++|.+|+|||||++++...++...+..+++.++..+.+.+++..+.+++|||+|+++|+++...+++
T Consensus 1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR 80 (210)
T KOG0394|consen 1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR 80 (210)
T ss_pred CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence 655 4577899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++++|||++++++|+.+..|.++++.+..+..+...|+||++||+|+.+...++++...++.++...+++|++++||
T Consensus 81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA 160 (210)
T KOG0394|consen 81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA 160 (210)
T ss_pred CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence 99999999999999999999999999999999999999999999999999887779999999999999999999999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCC
Q 029929 160 KEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
|...|+.++|..+.+.++..+.
T Consensus 161 K~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 161 KEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccccHHHHHHHHHHHHHhccc
Confidence 9999999999999999988765
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-39 Score=211.03 Aligned_cols=173 Identities=42% Similarity=0.733 Sum_probs=162.2
Q ss_pred CccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccC
Q 029929 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA 81 (185)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~ 81 (185)
...-.+.|||+|+|..|+|||.|+.+|....+.+.+..|++.++....+.+++..+++++|||+||++|+.....+++.+
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 44457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc-EEEeeec
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETSAK 160 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~ 160 (185)
|++|+|||+++.+||..+..|+.++.++... ++|.++|+||+|+.+. +.+..++++.|+..++ .+ ++++||+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~----~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~-~~~f~ETSAK 155 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASE----NVPKLLVGNKCDLTEK--RVVSTEEAQEFADELG-IPIFLETSAK 155 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccC----CCCeEEEeeccccHhh--eecCHHHHHHHHHhcC-CcceeecccC
Confidence 9999999999999999999999999877655 7899999999999887 8899999999999888 66 9999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCC
Q 029929 161 EGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~ 181 (185)
++.++++.|..|...+..+..
T Consensus 156 ~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred CccCHHHHHHHHHHHHHHhcc
Confidence 999999999999998887654
No 3
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-38 Score=206.42 Aligned_cols=171 Identities=45% Similarity=0.755 Sum_probs=160.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|..++|||||+.++..+.+.+...+|++.-+....+.+++..+++.+|||+|+++++.+...|+++++++|
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi 82 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI 82 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||+++.+||..++.|..++.+..++ ++-+.+|+||+||... +++..++...++...+ ..++++||+++.|+
T Consensus 83 vvYDit~~~SF~~aK~WvkeL~~~~~~----~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-ll~~ETSAKTg~Nv 155 (200)
T KOG0092|consen 83 VVYDITDEESFEKAKNWVKELQRQASP----NIVIALVGNKADLLER--REVEFEEAQAYAESQG-LLFFETSAKTGENV 155 (200)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCC----CeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-CEEEEEecccccCH
Confidence 999999999999999999999877653 6667789999999985 8899999999999988 99999999999999
Q ss_pred HHHHHHHHHHHhhcCCcc
Q 029929 166 EAAFECIAKNALKNEPQE 183 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~ 183 (185)
+++|..|.+.++...++.
T Consensus 156 ~~if~~Ia~~lp~~~~~~ 173 (200)
T KOG0092|consen 156 NEIFQAIAEKLPCSDPQE 173 (200)
T ss_pred HHHHHHHHHhccCccccc
Confidence 999999999999877654
No 4
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.4e-37 Score=203.18 Aligned_cols=171 Identities=41% Similarity=0.727 Sum_probs=161.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
-...++|+++|.+++|||+++.+|..+.+...+..|.+.++....+..++..+.+++|||+||+.++.+...|++.|+++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi 88 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 88 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCee
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|||+++..+|+++..|+..+.++... .+|.++|+||+|+... +++..+..++++..++ ++|+++||++|.|
T Consensus 89 ~LvyDitne~Sfeni~~W~~~I~e~a~~----~v~~~LvGNK~D~~~~--R~V~~e~ge~lA~e~G-~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 89 LLVYDITNEKSFENIRNWIKNIDEHASD----DVVKILVGNKCDLEEK--RQVSKERGEALAREYG-IKFFETSAKTNFN 161 (207)
T ss_pred EEEEEccchHHHHHHHHHHHHHHhhCCC----CCcEEEeecccccccc--ccccHHHHHHHHHHhC-CeEEEccccCCCC
Confidence 9999999999999999999999877665 7899999999999885 8999999999999997 9999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 029929 165 VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~~ 182 (185)
+.+.|-.|++.+..+..+
T Consensus 162 I~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKLED 179 (207)
T ss_pred HHHHHHHHHHHHHhhcch
Confidence 999999999999976543
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=1.6e-36 Score=206.37 Aligned_cols=169 Identities=31% Similarity=0.566 Sum_probs=150.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|..|+|||||+.++....+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~il 83 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGII 83 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 35699999999999999999999998887777778888887777888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++++++++.+..|+.++.... ++.|+++|+||+|+... +.+..++++.++...+ +++++|||++|.|+
T Consensus 84 lVfD~t~~~Sf~~~~~w~~~i~~~~-----~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~-~~~~e~SAk~g~~V 155 (189)
T cd04121 84 LVYDITNRWSFDGIDRWIKEIDEHA-----PGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG-MTFFEVSPLCNFNI 155 (189)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC-CEEEEecCCCCCCH
Confidence 9999999999999999999997653 26899999999999764 5677888999988876 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 029929 166 EAAFECIAKNALKNEPQ 182 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~~ 182 (185)
+++|++|++.+..+.+.
T Consensus 156 ~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 156 TESFTELARIVLMRHGR 172 (189)
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999988876544
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.5e-36 Score=208.35 Aligned_cols=165 Identities=38% Similarity=0.685 Sum_probs=146.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 47999999999999999999999998888899988888888888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+.... ..+.|+++|+||+|+... +++..++..+++.....+.++++||++|.|++++
T Consensus 81 Dvtd~~Sf~~l~~w~~~i~~~~----~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~ 154 (202)
T cd04120 81 DITKKETFDDLPKWMKMIDKYA----SEDAELLLVGNKLDCETD--REISRQQGEKFAQQITGMRFCEASAKDNFNVDEI 154 (202)
T ss_pred ECcCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 9999999999999988775543 236899999999999754 6677778888887754488999999999999999
Q ss_pred HHHHHHHHhhc
Q 029929 169 FECIAKNALKN 179 (185)
Q Consensus 169 ~~~i~~~~~~~ 179 (185)
|.+|++.+.++
T Consensus 155 F~~l~~~~~~~ 165 (202)
T cd04120 155 FLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
No 7
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-37 Score=199.68 Aligned_cols=168 Identities=40% Similarity=0.632 Sum_probs=155.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
+.+|++++|..++||||||.+++...+...+..|+|.++....+.+.+..+.+++|||+||++|+.+...|++++.++|+
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||+++..+|+...+|+..+.. ..+..++-+++|+||.||.++ ++...++....+..++ +.|+++||+.|+|++
T Consensus 101 VyDit~~~Sfe~t~kWi~dv~~---e~gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-a~f~etsak~g~NVk 174 (221)
T KOG0094|consen 101 VYDITDRNSFENTSKWIEDVRR---ERGSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-AEFIETSAKAGENVK 174 (221)
T ss_pred EEeccccchHHHHHHHHHHHHh---ccCCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-cEEEEecccCCCCHH
Confidence 9999999999999999998864 333435678899999999987 8888999998888888 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
++|..|..+++...
T Consensus 175 ~lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 175 QLFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHHhccCcc
Confidence 99999999888764
No 8
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8.7e-36 Score=205.62 Aligned_cols=171 Identities=39% Similarity=0.730 Sum_probs=149.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
+||+++|++|+|||||++++.+..+...+.++.+.++....+.++ +..+.+.+|||||++.+..++..+++.+|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 589999999999999999999998888888998888877777777 7788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
||++++++++.+..|+..+..........++|+++|+||+|+... +....+++..++...+..+++++||++|.|+++
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e 158 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENGFIGWFETSAKEGINIEE 158 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcCCceEEEEeCCCCCCHHH
Confidence 999999999999999888876543333347899999999999753 456677888888877657899999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 029929 168 AFECIAKNALKNEP 181 (185)
Q Consensus 168 ~~~~i~~~~~~~~~ 181 (185)
++++|++.+....+
T Consensus 159 ~f~~l~~~l~~~~~ 172 (201)
T cd04107 159 AMRFLVKNILANDK 172 (201)
T ss_pred HHHHHHHHHHHhch
Confidence 99999999887643
No 9
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.6e-36 Score=193.19 Aligned_cols=168 Identities=39% Similarity=0.683 Sum_probs=157.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+|++++|..|+|||.|+.+++...+.+....|.+.++....+.+++..+++++|||+|++.|++....|++.+.++|
T Consensus 4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++.+++|..+..|+..+..+.. ++..+++++||+||... +++..++.+.|+...+ ..++++||++++|+
T Consensus 84 LVydit~r~sF~hL~~wL~D~rq~~~----~NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg-LifmETSakt~~~V 156 (216)
T KOG0098|consen 84 LVYDITRRESFNHLTSWLEDARQHSN----ENMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG-LIFMETSAKTAENV 156 (216)
T ss_pred EEEEccchhhHHHHHHHHHHHHHhcC----CCcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC-ceeehhhhhhhhhH
Confidence 99999999999999999999987753 38889999999999877 7999999999999976 88999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
+|.|..+...+.+..
T Consensus 157 EEaF~nta~~Iy~~~ 171 (216)
T KOG0098|consen 157 EEAFINTAKEIYRKI 171 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877653
No 10
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=6.3e-35 Score=195.77 Aligned_cols=164 Identities=37% Similarity=0.663 Sum_probs=143.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.+||+++|++|+|||||++++....+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 81 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 81 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence 47999999999999999999999988887778888888777778888889999999999999999899999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+..... ++.|+++|+||+|+... +....++...++...+ ++++++||++|.|+.+
T Consensus 82 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~e 154 (166)
T cd04122 82 YDITRRSTYNHLSSWLTDARNLTN----PNTVIFLIGNKADLEAQ--RDVTYEEAKQFADENG-LLFLECSAKTGENVED 154 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999888765432 36799999999999765 4566777778877665 8999999999999999
Q ss_pred HHHHHHHHHhh
Q 029929 168 AFECIAKNALK 178 (185)
Q Consensus 168 ~~~~i~~~~~~ 178 (185)
++.++++.+.+
T Consensus 155 ~f~~l~~~~~~ 165 (166)
T cd04122 155 AFLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 11
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.4e-35 Score=197.61 Aligned_cols=167 Identities=22% Similarity=0.451 Sum_probs=145.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|..|+|||||++++....+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++|
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i 81 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 81 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence 4568999999999999999999999998888888887655 456778888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|||++++++++.+ ..|...+.... ++.|+++|+||+|+... ..+.+..+++.+++...+.++|
T Consensus 82 lvyDit~~~Sf~~~~~~w~~~i~~~~-----~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 82 ICFDISRPETLDSVLKKWKGEIQEFC-----PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHC-----CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 99999999999997 78998887654 26799999999998642 1245788899999998885589
Q ss_pred EEeeeccCCC-HHHHHHHHHHHHhh
Q 029929 155 FETSAKEGFN-VEAAFECIAKNALK 178 (185)
Q Consensus 155 ~~~s~~~~~~-i~~~~~~i~~~~~~ 178 (185)
++|||++|.| ++++|..+++.+.+
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLACVN 181 (182)
T ss_pred EECCcCCCCCCHHHHHHHHHHHHhc
Confidence 9999999998 99999999987654
No 12
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=187.39 Aligned_cols=169 Identities=34% Similarity=0.619 Sum_probs=155.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|..|+|||||+.+|....+.+....+++.++..+.+.+++..+++.+|||+|+++|+.+...|++.+.++|
T Consensus 9 ~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 9 DTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred ceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 34599999999999999999999999999888888999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++.+++|..+..|+.++..+.... ++-.++|+||+|..+. +.+..++..+|+...+ +-|+++||++.+|+
T Consensus 89 lVYDVT~Rdtf~kLd~W~~Eld~Ystn~---diikmlVgNKiDkes~--R~V~reEG~kfAr~h~-~LFiE~SAkt~~~V 162 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKLDIWLKELDLYSTNP---DIIKMLVGNKIDKESE--RVVDREEGLKFARKHR-CLFIECSAKTRENV 162 (209)
T ss_pred EEEEccchhhHHhHHHHHHHHHhhcCCc---cHhHhhhcccccchhc--ccccHHHHHHHHHhhC-cEEEEcchhhhccH
Confidence 9999999999999999999988665443 6677899999997654 8899999999999887 89999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
+..|+.++.++.+-+
T Consensus 163 ~~~FeelveKIi~tp 177 (209)
T KOG0080|consen 163 QCCFEELVEKIIETP 177 (209)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999998653
No 13
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=1.2e-34 Score=194.50 Aligned_cols=165 Identities=42% Similarity=0.739 Sum_probs=145.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+||+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~ 81 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999999888888888888877778888888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++...++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 154 (167)
T cd01867 82 VYDITDEKSFENIRNWMRNIEEHAS----EDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG-IKFLETSAKANINVE 154 (167)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999999998876532 36799999999999864 4556677777777666 799999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
+++.++.+++..
T Consensus 155 ~~~~~i~~~~~~ 166 (167)
T cd01867 155 EAFFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 14
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.2e-34 Score=195.27 Aligned_cols=167 Identities=25% Similarity=0.490 Sum_probs=143.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|.+|+|||||++++....+...+.++.+..+ ...+.+++..+.+.+|||||+..+..++..+++.+|++|+|
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 47999999999999999999999998877778876544 44566788888999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
||++++++++.+..|...+..... ..++|+++|+||+|+.+. +.+..++...++...+ +++++|||++|.|+++
T Consensus 81 ~d~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 81 YSVTDRHSFQEASEFKKLITRVRL---TEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN-CPFFETSAALRHYIDD 154 (172)
T ss_pred EECCchhHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC-CEEEEEecCCCCCHHH
Confidence 999999999999888777765432 236899999999999764 5567778888887776 8999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 029929 168 AFECIAKNALKNEP 181 (185)
Q Consensus 168 ~~~~i~~~~~~~~~ 181 (185)
+|++|++.+.++..
T Consensus 155 ~f~~l~~~~~~~~~ 168 (172)
T cd04141 155 AFHGLVREIRRKES 168 (172)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887543
No 15
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=9.7e-35 Score=195.62 Aligned_cols=163 Identities=32% Similarity=0.563 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||+.++....+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy 80 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 80 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence 6899999999999999999999999888889887655 455677888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
|++++++|+.+ ..|...+.... .+.|+++|+||+|+.+.. .+.+..++...++...+..++++|||
T Consensus 81 d~~~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA 155 (176)
T cd04133 81 SLISRASYENVLKKWVPELRHYA-----PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSS 155 (176)
T ss_pred EcCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCC
Confidence 99999999998 67988886543 268999999999996532 13467888889988887346999999
Q ss_pred ccCCCHHHHHHHHHHHHh
Q 029929 160 KEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~ 177 (185)
++|.|++++|+.+++.+.
T Consensus 156 k~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 156 KTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CcccCHHHHHHHHHHHHh
Confidence 999999999999999764
No 16
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.1e-34 Score=197.12 Aligned_cols=167 Identities=24% Similarity=0.499 Sum_probs=141.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|..|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv 81 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC 81 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence 48999999999999999999999998888888887655 34456788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEE
Q 029929 88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
||++++++++.+. .|...+.... ++.|+++|+||+|+.+... +.+..++...++...+.+++++
T Consensus 82 ydit~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e 156 (191)
T cd01875 82 FSIASPSSYENVRHKWHPEVCHHC-----PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLE 156 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999996 5777665432 2689999999999965421 2345667888888777568999
Q ss_pred eeeccCCCHHHHHHHHHHHHhhcC
Q 029929 157 TSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+||++|.|++++|.++++.+....
T Consensus 157 ~SAk~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 157 CSALNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred eCCCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999888654
No 17
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.6e-34 Score=193.48 Aligned_cols=168 Identities=56% Similarity=1.006 Sum_probs=147.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|++|+|||||++++.+..+.+.+.++.+.++....+.+++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 2 KSSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred CceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 34569999999999999999999999988877778888777777788888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|||++++++++.+..|...+..........+.|+++|+||+|+.. +....+++.+++...+..+++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 158 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENGDYPYFETSAKDATN 158 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCCCCeEEEEECCCCCC
Confidence 99999999999999999999887766544445789999999999873 456677888888877756899999999999
Q ss_pred HHHHHHHHHHH
Q 029929 165 VEAAFECIAKN 175 (185)
Q Consensus 165 i~~~~~~i~~~ 175 (185)
+.++++++++.
T Consensus 159 v~~~~~~~~~~ 169 (170)
T cd04116 159 VAAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 18
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=3.2e-34 Score=194.71 Aligned_cols=167 Identities=46% Similarity=0.724 Sum_probs=143.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------CcEEEEEEecCCChhhhcccccc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------DRLFTLQIWDTAGQERFQSLGVA 76 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~ 76 (185)
+.+||+++|++|||||||++++.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 45899999999999999999999999888888888877766666554 35688999999999999999999
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+++.+|++++|+|+++++++..+..|+..+..... ..+.|+++|+||+|+.+. +....++...++...+ +++++
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e 156 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY---CENPDIVLCGNKADLEDQ--RQVSEEQAKALADKYG-IPYFE 156 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC---CCCCcEEEEEeCccchhc--CccCHHHHHHHHHHcC-CeEEE
Confidence 99999999999999999999999999988865532 236799999999999764 4556677888888776 89999
Q ss_pred eeeccCCCHHHHHHHHHHHHhhc
Q 029929 157 TSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+||++|.|+++++++|.+.+.++
T Consensus 157 ~Sak~~~~v~~l~~~l~~~~~~~ 179 (180)
T cd04127 157 TSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999988654
No 19
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.7e-34 Score=194.15 Aligned_cols=163 Identities=23% Similarity=0.446 Sum_probs=141.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|..|+|||||++++....+...+.|+.+..+ ...+.+++..+.+.+|||+|++.+......+++.+|++|+||
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf 80 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF 80 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence 6999999999999999999999998888888887665 356778888899999999999999999999999999999999
Q ss_pred ECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+ ..|...+.... ++.|+++|+||+||... ..+.+..+++.+++...+..+++++
T Consensus 81 dit~~~Sf~~~~~~w~~~i~~~~-----~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~ 155 (178)
T cd04131 81 DISRPETLDSVLKKWRGEIQEFC-----PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLEC 155 (178)
T ss_pred ECCChhhHHHHHHHHHHHHHHHC-----CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEEC
Confidence 99999999996 78988887654 26799999999999642 1245778899999998884489999
Q ss_pred eeccCCC-HHHHHHHHHHHHh
Q 029929 158 SAKEGFN-VEAAFECIAKNAL 177 (185)
Q Consensus 158 s~~~~~~-i~~~~~~i~~~~~ 177 (185)
||++|++ ++++|..+++.+.
T Consensus 156 SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 156 SAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred ccCcCCcCHHHHHHHHHHHHh
Confidence 9999995 9999999999765
No 20
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=5.3e-34 Score=191.11 Aligned_cols=163 Identities=37% Similarity=0.687 Sum_probs=140.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||++|++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~ 81 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY 81 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence 79999999999999999999999988777888877776666666777789999999999999988999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....++..+++...+ ++++++||++|.|+.++
T Consensus 82 d~~~~~s~~~~~~~~~~i~~~~~----~~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 82 DITNEESFNAVQDWSTQIKTYSW----DNAQVILVGNKCDMEDE--RVVSSERGRQLADQLG-FEFFEASAKENINVKQV 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999988765432 26799999999999764 3445666677777666 78999999999999999
Q ss_pred HHHHHHHHhh
Q 029929 169 FECIAKNALK 178 (185)
Q Consensus 169 ~~~i~~~~~~ 178 (185)
++++.+.+..
T Consensus 155 ~~~l~~~~~~ 164 (165)
T cd01865 155 FERLVDIICD 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999987754
No 21
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=4.5e-34 Score=191.81 Aligned_cols=166 Identities=34% Similarity=0.641 Sum_probs=144.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++|+|+
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY 80 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence 58999999999999999999999988888899988888888888888899999999999988888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCC-CCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPS-DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
|++++++++.+..|+..+....... ...+.|+++|+||+|+... .....++...++...+ ++++++||++|.|+++
T Consensus 81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 157 (168)
T cd04119 81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESKG-FKYFETSACTGEGVNE 157 (168)
T ss_pred ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCCHHH
Confidence 9999999999999999887765421 1236799999999999753 4456667777777666 8999999999999999
Q ss_pred HHHHHHHHHh
Q 029929 168 AFECIAKNAL 177 (185)
Q Consensus 168 ~~~~i~~~~~ 177 (185)
++++|.+.+.
T Consensus 158 l~~~l~~~l~ 167 (168)
T cd04119 158 MFQTLFSSIV 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999998875
No 22
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=5.1e-34 Score=190.38 Aligned_cols=160 Identities=33% Similarity=0.622 Sum_probs=141.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|++|+|||||++++....+.+.+.++.+.++....+.+.+..+.+.+||++|++.+......+++.+|++++||
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY 80 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence 58999999999999999999999988888888888887778888888889999999999999988889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... .+.|+++|+||.|+... +.+..++...++...+ ++++++||++|.|++++
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~----~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~ 153 (161)
T cd04117 81 DISSERSYQHIMKWVSDVDEYAP----EGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG-MDFFETSACTNSNIKES 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 99999999999999988865532 26799999999999764 5556677888877666 89999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
|.+|+++
T Consensus 154 f~~l~~~ 160 (161)
T cd04117 154 FTRLTEL 160 (161)
T ss_pred HHHHHhh
Confidence 9999875
No 23
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=7e-34 Score=190.53 Aligned_cols=163 Identities=38% Similarity=0.649 Sum_probs=141.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+||+++|++|+|||||++++....+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll 81 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII 81 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999888877777888777777778888877899999999999998888999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+.... ..+.|+++|+||+|+... ++...++...++...+...++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 155 (165)
T cd01864 82 AYDITRRSSFESVPHWIEEVEKYG----ASNVVLLLIGNKCDLEEQ--REVLFEEACTLAEKNGMLAVLETSAKESQNVE 155 (165)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cccCHHHHHHHHHHcCCcEEEEEECCCCCCHH
Confidence 999999999999999999886542 237799999999999765 45566777788777775679999999999999
Q ss_pred HHHHHHHHH
Q 029929 167 AAFECIAKN 175 (185)
Q Consensus 167 ~~~~~i~~~ 175 (185)
++++++.+.
T Consensus 156 ~~~~~l~~~ 164 (165)
T cd01864 156 EAFLLMATE 164 (165)
T ss_pred HHHHHHHHh
Confidence 999999875
No 24
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=8.8e-34 Score=190.20 Aligned_cols=164 Identities=41% Similarity=0.753 Sum_probs=142.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.+||+++|++|+|||||++++.+..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v 81 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV 81 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence 47999999999999999999999988877788888788777788888888999999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+..... .+.|+++|+||+|+... .....++...++...+ ++++++||++|.|+.+
T Consensus 82 ~d~~~~~s~~~l~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 154 (166)
T cd01869 82 YDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTDK--RVVDYSEAQEFADELG-IPFLETSAKNATNVEQ 154 (166)
T ss_pred EECcCHHHHHhHHHHHHHHHHhCC----CCCcEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCcCHHH
Confidence 999999999999999998865532 26799999999998764 4455677777777665 8999999999999999
Q ss_pred HHHHHHHHHhh
Q 029929 168 AFECIAKNALK 178 (185)
Q Consensus 168 ~~~~i~~~~~~ 178 (185)
++.+|.+.+..
T Consensus 155 ~~~~i~~~~~~ 165 (166)
T cd01869 155 AFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 25
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=9.7e-34 Score=197.19 Aligned_cols=167 Identities=35% Similarity=0.539 Sum_probs=145.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
+||+++|.+|+|||||+++|.+..+...+.++.+.++....+.+++ ..+.+.+||++|++.+...+..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999998888899999888877777765 578999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
||++++++++.+..|...+....... ..+.|+++|+||+|+.+. +....+....++...+ ++++++||++|+|+++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~-~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-~~~~~iSAktg~gv~~ 156 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSS-ETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-MESCLVSAKTGDRVNL 156 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcccc-CCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 99999999999999999887765322 235689999999999754 5567777888887776 7899999999999999
Q ss_pred HHHHHHHHHhhc
Q 029929 168 AFECIAKNALKN 179 (185)
Q Consensus 168 ~~~~i~~~~~~~ 179 (185)
+|++|++.+...
T Consensus 157 lf~~l~~~l~~~ 168 (215)
T cd04109 157 LFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHhc
Confidence 999999988754
No 26
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=9.8e-34 Score=195.02 Aligned_cols=168 Identities=41% Similarity=0.710 Sum_probs=145.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
+..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35699999999999999999999999888778888888887777777887889999999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... ..|+++|+||+|+... .....++...+....+ ++++++||++|.|+
T Consensus 84 lv~D~~~~~s~~~~~~~~~~i~~~~~-----~~piivVgNK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~gi 155 (199)
T cd04110 84 VVYDVTNGESFVNVKRWLQEIEQNCD-----DVCKVLVGNKNDDPER--KVVETEDAYKFAGQMG-ISLFETSAKENINV 155 (199)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEECCCCcCH
Confidence 99999999999999999988765432 5799999999999764 4455667777777666 89999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++++|.+.+.....
T Consensus 156 ~~lf~~l~~~~~~~~~ 171 (199)
T cd04110 156 EEMFNCITELVLRAKK 171 (199)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887543
No 27
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.2e-33 Score=190.06 Aligned_cols=165 Identities=35% Similarity=0.613 Sum_probs=141.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|.+|+|||||++++..+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++++|+|
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 81 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD 81 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence 79999999999999999999999988889999888887888888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 169 (185)
++++++++.+..|+..+...... ...|+++|+||+|+..........++...+....+ .+++++||++|.|+++++
T Consensus 82 ~~~~~s~~~~~~~~~~~~~~~~~---~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~e~Sa~~g~~v~~lf 157 (170)
T cd04108 82 LTDVASLEHTRQWLEDALKENDP---SSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQ-AEYWSVSALSGENVREFF 157 (170)
T ss_pred CcCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEChhcCccccccccHHHHHHHHHHcC-CeEEEEECCCCCCHHHHH
Confidence 99999999999999887654322 24689999999999654333344556667766666 789999999999999999
Q ss_pred HHHHHHHhh
Q 029929 170 ECIAKNALK 178 (185)
Q Consensus 170 ~~i~~~~~~ 178 (185)
+.|++.+.+
T Consensus 158 ~~l~~~~~~ 166 (170)
T cd04108 158 FRVAALTFE 166 (170)
T ss_pred HHHHHHHHH
Confidence 999998754
No 28
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=8.4e-34 Score=193.96 Aligned_cols=169 Identities=31% Similarity=0.556 Sum_probs=142.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus 3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 3459999999999999999999999888777777776555 455667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|...+..... ..+.|+++|+||+|+.+. +.+..++...+....+ ++++++||++|.|+
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~Sak~~~gi 155 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKD---KDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG-IPFLETSAKQRVNV 155 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC-CEEEEeeCCCCCCH
Confidence 99999999999999999988876533 237799999999998654 4455666667766665 79999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++.+|++.+.+..+
T Consensus 156 ~~~~~~l~~~l~~~~~ 171 (189)
T PTZ00369 156 DEAFYELVREIRKYLK 171 (189)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998876643
No 29
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1e-33 Score=196.22 Aligned_cols=169 Identities=34% Similarity=0.656 Sum_probs=145.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
.+||+++|.+|+|||||++++.+..+...+.++.+.++....+.+ ++..+.+.+|||+|++.+......+++.+|++++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 589999999999999999999999888777888888877777766 4567899999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||++++++++.+..|+..+...... ...|+++|+||+|+... .....++...++...+ ++++++||++|.|+.
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~---~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sak~g~~v~ 155 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQP---HRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG-MKYIETSARTGDNVE 155 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEEccccccc--cccCHHHHHHHHHHhC-CEEEEEeCCCCCCHH
Confidence 99999999999999999988765433 25688999999999764 5566777788887777 899999999999999
Q ss_pred HHHHHHHHHHhhcCCc
Q 029929 167 AAFECIAKNALKNEPQ 182 (185)
Q Consensus 167 ~~~~~i~~~~~~~~~~ 182 (185)
+++++|.+.+.++.++
T Consensus 156 e~f~~l~~~~~~~~~~ 171 (211)
T cd04111 156 EAFELLTQEIYERIKR 171 (211)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999988876443
No 30
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=9.6e-34 Score=192.23 Aligned_cols=165 Identities=25% Similarity=0.465 Sum_probs=140.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|..|+|||||++++....+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~ 80 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF 80 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence 58999999999999999999999988888999988887778888888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
|++++++++.+..|+..+..... ...| ++|+||+|+.... ......++...++...+ ++++++||++|.|+
T Consensus 81 D~t~~~s~~~i~~~~~~~~~~~~----~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-~~~~e~SAk~g~~v 154 (182)
T cd04128 81 DLTRKSTLNSIKEWYRQARGFNK----TAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-APLIFCSTSHSINV 154 (182)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999998866432 2456 6789999996421 11222456667777766 89999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
+++|+++.+.+..-
T Consensus 155 ~~lf~~l~~~l~~~ 168 (182)
T cd04128 155 QKIFKIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988753
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=7.3e-34 Score=191.87 Aligned_cols=162 Identities=25% Similarity=0.471 Sum_probs=137.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||++++..+.+...+.|+.+..+. ....+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 68999999999999999999999988888888876654 34567788899999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+. .|...+.... ++.|+++|+||+|+.... .+.+..+++.+++...+.+.++++
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 155 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHC-----PKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEe
Confidence 999999999986 5877775542 267999999999986532 145667778888877766799999
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~ 176 (185)
||++|.|++++|+.++.++
T Consensus 156 SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 156 SALTQKGLKNVFDEAILAA 174 (175)
T ss_pred cCCCCCCHHHHHHHHHHHh
Confidence 9999999999999998864
No 32
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=8.7e-34 Score=189.62 Aligned_cols=161 Identities=36% Similarity=0.632 Sum_probs=136.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|||||||++++....+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 7999999999999999999999888777777765 344556677888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|...+..... ..+.|+++|+||+|+.+. +....++...+....+ .+++++||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04136 81 SITSQSSFNDLQDLREQILRVKD---TENVPMVLVGNKCDLEDE--RVVSREEGQALARQWG-CPFYETSAKSKINVDEV 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHHHH
Confidence 99999999999999888876532 237799999999999764 4455666667776666 89999999999999999
Q ss_pred HHHHHHHH
Q 029929 169 FECIAKNA 176 (185)
Q Consensus 169 ~~~i~~~~ 176 (185)
+++|.+.+
T Consensus 155 ~~~l~~~~ 162 (163)
T cd04136 155 FADLVRQI 162 (163)
T ss_pred HHHHHHhc
Confidence 99998764
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=1.4e-33 Score=188.86 Aligned_cols=163 Identities=31% Similarity=0.575 Sum_probs=137.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
++||+++|.+|||||||++++....+...+.++.+..+ ...+.+.+..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV 79 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence 37999999999999999999998877766677776544 35567777788999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|.+++.+++.+..|+..+..... ..+.|+++|+||+|+.+. .....++...++...+ ++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 80 YSITAQSTFNDLQDLREQILRVKD---TEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWG-CAFLETSAKAKINVNE 153 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECCcchhc--cEEcHHHHHHHHHHhC-CEEEEeeCCCCCCHHH
Confidence 999999999999989888875432 237899999999999764 4455666667776666 8999999999999999
Q ss_pred HHHHHHHHHh
Q 029929 168 AFECIAKNAL 177 (185)
Q Consensus 168 ~~~~i~~~~~ 177 (185)
++.+|.+.+.
T Consensus 154 ~~~~l~~~l~ 163 (164)
T cd04175 154 IFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999998764
No 34
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.8e-33 Score=196.12 Aligned_cols=167 Identities=21% Similarity=0.415 Sum_probs=144.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|..|+|||||+.++....+...+.|+.+..+. ..+.+++..+.+.+|||+|++.+..+...+++.+|++|+
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl 90 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 90 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence 4589999999999999999999999998888899876664 457788888999999999999999999999999999999
Q ss_pred EEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcEE
Q 029929 87 VYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 87 v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
|||++++++|+.+ ..|+..+..... +.|+++|+||+|+... ..+.+..+++.+++...+..+|+
T Consensus 91 VyDit~~~Sf~~~~~~w~~~i~~~~~-----~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~ 165 (232)
T cd04174 91 CFDISRPETVDSALKKWKAEIMDYCP-----STRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYL 165 (232)
T ss_pred EEECCChHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEE
Confidence 9999999999985 789888876532 5799999999998642 12567888999999988833699
Q ss_pred EeeeccCC-CHHHHHHHHHHHHhhc
Q 029929 156 ETSAKEGF-NVEAAFECIAKNALKN 179 (185)
Q Consensus 156 ~~s~~~~~-~i~~~~~~i~~~~~~~ 179 (185)
+|||++|. |++++|..++..+.++
T Consensus 166 EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 166 ECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EccCCcCCcCHHHHHHHHHHHHHHh
Confidence 99999998 8999999999988765
No 35
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-33 Score=192.56 Aligned_cols=166 Identities=43% Similarity=0.721 Sum_probs=142.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
+||+++|++|+|||||++++....+.. .+.++.+.++....+.+++..+.+.+|||||+..+......+++.+|++|+|
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 80 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL 80 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence 589999999999999999999888753 5667777777776778888889999999999999988888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+...... +.|+++|+||+|+... +....++...+....+ .+++++||++|.|+++
T Consensus 81 ~D~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~Sa~~~~~v~~ 153 (191)
T cd04112 81 YDITNKASFDNIRAWLTEIKEYAQE----DVVIMLLGNKADMSGE--RVVKREDGERLAKEYG-VPFMETSAKTGLNVEL 153 (191)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCC----CCcEEEEEEcccchhc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHH
Confidence 9999999999999999888765432 6799999999999754 4455667777777666 7999999999999999
Q ss_pred HHHHHHHHHhhcCC
Q 029929 168 AFECIAKNALKNEP 181 (185)
Q Consensus 168 ~~~~i~~~~~~~~~ 181 (185)
++.+|.+.+.....
T Consensus 154 l~~~l~~~~~~~~~ 167 (191)
T cd04112 154 AFTAVAKELKHRKY 167 (191)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987753
No 36
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=1.4e-33 Score=196.58 Aligned_cols=164 Identities=30% Similarity=0.591 Sum_probs=141.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|.+|+|||||++++....+...+.++.+.++....+...+..+.+.+|||+|++.+..++..+++.+|++|
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 56699999999999999999999999888888899988888777777777899999999999999999989999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++++++++.+..|+..+.... .+.|+++|+||+|+... ....+.+ .+....+ ++++++||++|.|+
T Consensus 91 lvfD~~~~~s~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~---~v~~~~~-~~~~~~~-~~~~e~SAk~~~~i 160 (219)
T PLN03071 91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR---QVKAKQV-TFHRKKN-LQYYEISAKSNYNF 160 (219)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEEchhhhhc---cCCHHHH-HHHHhcC-CEEEEcCCCCCCCH
Confidence 9999999999999999999887653 26899999999999642 2233344 4445444 88999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
+++|.+|++.+.+.
T Consensus 161 ~~~f~~l~~~~~~~ 174 (219)
T PLN03071 161 EKPFLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998755
No 37
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=100.00 E-value=3.2e-33 Score=188.46 Aligned_cols=170 Identities=81% Similarity=1.265 Sum_probs=147.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++|+++
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 80 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999888777788877777777888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++....|...+...+......++|+++|+||+|+... .....++...+....+..+++++|+++|.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 158 (172)
T cd01862 81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQA 158 (172)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcCCceEEEEECCCCCCHHHH
Confidence 99999999998888888777766555557899999999999853 3445666667766666579999999999999999
Q ss_pred HHHHHHHHhhcC
Q 029929 169 FECIAKNALKNE 180 (185)
Q Consensus 169 ~~~i~~~~~~~~ 180 (185)
+++|.+.+.++.
T Consensus 159 ~~~i~~~~~~~~ 170 (172)
T cd01862 159 FETIARKALEQE 170 (172)
T ss_pred HHHHHHHHHhcc
Confidence 999999988764
No 38
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.4e-33 Score=187.92 Aligned_cols=162 Identities=39% Similarity=0.741 Sum_probs=142.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+......+++.++++|+|
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 82 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV 82 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence 47999999999999999999999988878888888888888888888888999999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....++...++...+ ++++++||++|.|+++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~~----~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 155 (165)
T cd01868 83 YDITKKQTFENVERWLKELRDHADS----NIVIMLVGNKSDLRHL--RAVPTEEAKAFAEKNG-LSFIETSALDGTNVEE 155 (165)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 9999999999999999988765432 5799999999999764 4556667777776654 8899999999999999
Q ss_pred HHHHHHHHH
Q 029929 168 AFECIAKNA 176 (185)
Q Consensus 168 ~~~~i~~~~ 176 (185)
++++|...+
T Consensus 156 l~~~l~~~i 164 (165)
T cd01868 156 AFKQLLTEI 164 (165)
T ss_pred HHHHHHHHh
Confidence 999998875
No 39
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2.5e-33 Score=191.53 Aligned_cols=166 Identities=47% Similarity=0.758 Sum_probs=144.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~ 80 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY 80 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence 58999999999999999999999888777888888887777888888889999999999999888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... .+.|+++++||+|+.+. .....+....++...+ ++++++||++|.|++++
T Consensus 81 d~~~~~s~~~i~~~~~~i~~~~~----~~~~~ivv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~evSa~~~~~i~~~ 153 (188)
T cd04125 81 DVTDQESFENLKFWINEINRYAR----ENVIKVIVANKSDLVNN--KVVDSNIAKSFCDSLN-IPFFETSAKQSINVEEA 153 (188)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECCCCccc--ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999999888876532 25799999999999754 4455667777777665 79999999999999999
Q ss_pred HHHHHHHHhhcCC
Q 029929 169 FECIAKNALKNEP 181 (185)
Q Consensus 169 ~~~i~~~~~~~~~ 181 (185)
+.+|.+.+..+..
T Consensus 154 f~~l~~~~~~~~~ 166 (188)
T cd04125 154 FILLVKLIIKRLE 166 (188)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987643
No 40
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.5e-34 Score=180.80 Aligned_cols=173 Identities=38% Similarity=0.638 Sum_probs=159.3
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|++.=...+|++++|+.|+|||.|+.+|...++.+....+++.++....+.+.++.+++++|||+|++.|++....|++.
T Consensus 2 msEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 2 MSETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred cchhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+-++++|||++++++|+.+..|+....-+.+. ++-+++++||.||.+. +++...+...|++... ..+.++|++
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~----nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne-l~flETSa~ 154 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASP----NIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSAL 154 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCC----cEEEEEeCChhhcChh--hhhhHHHHHhhhcccc-eeeeeeccc
Confidence 99999999999999999999999998766554 7788999999999877 8899999999999887 799999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|+++++.|-...+.++.+.
T Consensus 155 TGeNVEEaFl~c~~tIl~kI 174 (214)
T KOG0086|consen 155 TGENVEEAFLKCARTILNKI 174 (214)
T ss_pred ccccHHHHHHHHHHHHHHHH
Confidence 99999999998888877654
No 41
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=1.5e-33 Score=192.91 Aligned_cols=169 Identities=30% Similarity=0.497 Sum_probs=141.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|.+|+|||||++++....+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++|+|||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 589999999999999999998888777777776544 3445567777889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 169 (185)
++++++++.+..|+..+...... ...+.|+++|+||+|+... +....++...++...+ ++++++||++|.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SAk~~~~v~~l~ 155 (190)
T cd04144 80 ITSRSTFERVERFREQIQRVKDE-SAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG-CEFIEASAKTNVNVERAF 155 (190)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcc-cCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHHH
Confidence 99999999999998888765432 1246799999999999754 4455666777777666 799999999999999999
Q ss_pred HHHHHHHhhcCCcc
Q 029929 170 ECIAKNALKNEPQE 183 (185)
Q Consensus 170 ~~i~~~~~~~~~~~ 183 (185)
+++.+.+..++.+.
T Consensus 156 ~~l~~~l~~~~~~~ 169 (190)
T cd04144 156 YTLVRALRQQRQGG 169 (190)
T ss_pred HHHHHHHHHhhccc
Confidence 99999988776554
No 42
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-34 Score=188.41 Aligned_cols=167 Identities=38% Similarity=0.689 Sum_probs=157.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.+.|||+++|.+++|||-|+.++..+.+.....+|++.++....+.+++..++.++|||+||++++.....|++.+.+++
T Consensus 12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl 91 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 91 (222)
T ss_pred ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++...+|+.+.+|+.+++.+... ++++++|+||+||.+. +.+..++.+.++...+ ..|+++||.++.++
T Consensus 92 lVYDITr~~Tfenv~rWL~ELRdhad~----nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~-l~f~EtSAl~~tNV 164 (222)
T KOG0087|consen 92 LVYDITRRQTFENVERWLKELRDHADS----NIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG-LFFLETSALDATNV 164 (222)
T ss_pred EEEechhHHHHHHHHHHHHHHHhcCCC----CeEEEEeecchhhhhc--cccchhhhHhHHHhcC-ceEEEecccccccH
Confidence 999999999999999999999877654 8899999999999885 8889999999999887 89999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
+++|..++..+.+.
T Consensus 165 e~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 165 EKAFERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877654
No 43
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.5e-34 Score=179.72 Aligned_cols=165 Identities=45% Similarity=0.768 Sum_probs=154.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++.+++|.+|+|||+|+.+|....+..++..+++.++....+.+++..+++.+||++|++.|+.+...+++..+++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~v 86 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIV 86 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEE
Confidence 34788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||+++.+||.+..+|++++..++. .+|-++|+||+|.++. +.+..++++.++...+ +.+|++|+++..+++
T Consensus 87 VYDVTn~ESF~Nv~rWLeei~~ncd-----sv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg-ie~FETSaKe~~NvE 158 (198)
T KOG0079|consen 87 VYDVTNGESFNNVKRWLEEIRNNCD-----SVPKVLVGNKNDDPER--RVVDTEDARAFALQMG-IELFETSAKENENVE 158 (198)
T ss_pred EEECcchhhhHhHHHHHHHHHhcCc-----cccceecccCCCCccc--eeeehHHHHHHHHhcC-chheehhhhhcccch
Confidence 9999999999999999999987665 6789999999999876 8888999999999988 999999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
..|.-|.+.+..-
T Consensus 159 ~mF~cit~qvl~~ 171 (198)
T KOG0079|consen 159 AMFHCITKQVLQA 171 (198)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877643
No 44
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=3.2e-33 Score=186.71 Aligned_cols=159 Identities=37% Similarity=0.743 Sum_probs=138.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC--CcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
+||+++|.+|+|||||++++++..+...+.++.+.++....+.+. +..+.+++|||||++.+...+..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 489999999999999999999998887788888888766667666 677899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+.... .+.|+++|+||+|+... ..+..++...++...+ ++++++|++++.|++
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~-----~~~p~iiv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAEC-----GDIPMVLVQTKIDLLDQ--AVITNEEAEALAKRLQ-LPLFRTSVKDDFNVT 152 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 999999999999999988876543 26799999999999764 3455667777777766 799999999999999
Q ss_pred HHHHHHHHH
Q 029929 167 AAFECIAKN 175 (185)
Q Consensus 167 ~~~~~i~~~ 175 (185)
+++++|...
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999999864
No 45
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=5.4e-33 Score=186.24 Aligned_cols=161 Identities=32% Similarity=0.669 Sum_probs=136.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||++++....+...+.++.+.+.....+...+..+.+.+|||+|++.+......++..+|++|+|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF 80 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence 58999999999999999999988887777888887777777777777889999999999988888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... ++|+++|+||+|+... .... ....+.... .++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~-----~~piiiv~nK~Dl~~~---~~~~-~~~~~~~~~-~~~~~e~Sa~~~~~v~~~ 150 (166)
T cd00877 81 DVTSRVTYKNVPNWHRDLVRVCG-----NIPIVLCGNKVDIKDR---KVKA-KQITFHRKK-NLQYYEISAKSNYNFEKP 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC-----CCcEEEEEEchhcccc---cCCH-HHHHHHHHc-CCEEEEEeCCCCCChHHH
Confidence 99999999999999998876643 6799999999999732 2222 233444443 488999999999999999
Q ss_pred HHHHHHHHhhc
Q 029929 169 FECIAKNALKN 179 (185)
Q Consensus 169 ~~~i~~~~~~~ 179 (185)
+++|++.+...
T Consensus 151 f~~l~~~~~~~ 161 (166)
T cd00877 151 FLWLARKLLGN 161 (166)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 46
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=5.6e-33 Score=185.85 Aligned_cols=164 Identities=49% Similarity=0.844 Sum_probs=143.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||++++.+..+.....++.+.++....+.+++..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777888888887788888887789999999999998888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..+.. ++.|+++++||+|+... .+...+....+....+ ++++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~l~~~~~~~~----~~~pivvv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~~l 153 (164)
T smart00175 81 DITNRESFENLKNWLKELREYAD----PNVVIMLVGNKSDLEDQ--RQVSREEAEAFAEEHG-LPFFETSAKTNTNVEEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 99999999999889888876643 27899999999998764 4455666777777665 88999999999999999
Q ss_pred HHHHHHHHhhc
Q 029929 169 FECIAKNALKN 179 (185)
Q Consensus 169 ~~~i~~~~~~~ 179 (185)
+++|.+.+.++
T Consensus 154 ~~~i~~~~~~~ 164 (164)
T smart00175 154 FEELAREILKR 164 (164)
T ss_pred HHHHHHHHhhC
Confidence 99999988653
No 47
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=7.2e-33 Score=186.09 Aligned_cols=165 Identities=38% Similarity=0.683 Sum_probs=143.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+||+++|.+|+|||||++++.+..+...+.++.+.+.....+...+....+.+||+||++.+......+++.+|++++
T Consensus 3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~ 82 (168)
T cd01866 3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL 82 (168)
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35899999999999999999999998887777888888877888888878899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+.... .++.|+++|+||.|+... .....++...++...+ ++++++||+++.|+.
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~----~~~~pvivv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~i~ 155 (168)
T cd01866 83 VYDITRRETFNHLTSWLEDARQHS----NSNMTIMLIGNKCDLESR--REVSYEEGEAFAKEHG-LIFMETSAKTASNVE 155 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhC----CCCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 999999999999999998886653 237899999999999754 4456677777777665 899999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
+++.++.+.+.+
T Consensus 156 ~~~~~~~~~~~~ 167 (168)
T cd01866 156 EAFINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 48
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=4.8e-33 Score=186.27 Aligned_cols=163 Identities=35% Similarity=0.625 Sum_probs=137.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++.+..+...+.++.+.. ......+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 589999999999999999999988877766766533 3455667777889999999999999998899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|...+.+.... .+.|+++|+||+|+... +....+....++...+ .+++++||++|.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~i~~~~~~---~~~pii~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 80 SITDRQSFEEIKKFREQILRVKDR---DDVPIVLVGNKCDLESE--RVVSTEEGKELARQWG-CPFLETSAKERVNVDEA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceEcHHHHHHHHHHcC-CEEEEeecCCCCCHHHH
Confidence 999999999999888887665432 26799999999999764 4456667777777666 89999999999999999
Q ss_pred HHHHHHHHhh
Q 029929 169 FECIAKNALK 178 (185)
Q Consensus 169 ~~~i~~~~~~ 178 (185)
+++|++.+..
T Consensus 154 ~~~l~~~~~~ 163 (164)
T smart00173 154 FYDLVREIRK 163 (164)
T ss_pred HHHHHHHHhh
Confidence 9999987653
No 49
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=7.2e-33 Score=184.86 Aligned_cols=161 Identities=32% Similarity=0.604 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||++++....+.+...++.+.+.......+++..+.+.+|||+|++.+...+..+++.+|++++|+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999999888777777766666666777888889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++.+++.+..|+..+.... ++.|+++|+||+|+... ..++...++...+ ++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~-----~~~p~ivv~nK~Dl~~~-----~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 81 DVTRKITYKNLSKWYEELREYR-----PEIPCIVVANKIDLDPS-----VTQKKFNFAEKHN-LPLYYVSAADGTNVVKL 149 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhC-----CCCcEEEEEECccCchh-----HHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 9999999999999998886543 26799999999998532 1233444555554 79999999999999999
Q ss_pred HHHHHHHHhhcC
Q 029929 169 FECIAKNALKNE 180 (185)
Q Consensus 169 ~~~i~~~~~~~~ 180 (185)
++.+.+.+..++
T Consensus 150 ~~~l~~~~~~~~ 161 (161)
T cd04124 150 FQDAIKLAVSYK 161 (161)
T ss_pred HHHHHHHHHhcC
Confidence 999999887653
No 50
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=4.6e-33 Score=185.83 Aligned_cols=160 Identities=40% Similarity=0.666 Sum_probs=140.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~ 80 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888887777888888889999999999999888889999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|+++++++..+..|+..+..... ++.|+++++||+|+... .....++...++...+ ++++++||+++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~ 153 (161)
T cd04113 81 DITNRTSFEALPTWLSDARALAS----PNIVVILVGNKSDLADQ--REVTFLEASRFAQENG-LLFLETSALTGENVEEA 153 (161)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEEchhcchh--ccCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHH
Confidence 99999999999999887765432 37899999999999764 5566777788887777 89999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
++++++.
T Consensus 154 ~~~~~~~ 160 (161)
T cd04113 154 FLKCARS 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 51
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=6.4e-33 Score=193.00 Aligned_cols=167 Identities=38% Similarity=0.690 Sum_probs=146.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+||++|++.+...+..+++.++++|
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~i 89 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL 89 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEE
Confidence 35689999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....+....+....+ ++++++||++|.|+
T Consensus 90 lv~d~~~~~s~~~~~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~~~-~~~~e~SA~~g~~v 162 (216)
T PLN03110 90 LVYDITKRQTFDNVQRWLRELRDHAD----SNIVIMMAGNKSDLNHL--RSVAEEDGQALAEKEG-LSFLETSALEATNV 162 (216)
T ss_pred EEEECCChHHHHHHHHHHHHHHHhCC----CCCeEEEEEEChhcccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988876543 36899999999999754 4556667777776665 89999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|+..+...
T Consensus 163 ~~lf~~l~~~i~~~ 176 (216)
T PLN03110 163 EKAFQTILLEIYHI 176 (216)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988663
No 52
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=6e-33 Score=189.70 Aligned_cols=165 Identities=29% Similarity=0.483 Sum_probs=137.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|.+|+|||||++++....+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||
T Consensus 2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d 80 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS 80 (189)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence 7999999999999999999999988777788766553 445567777899999999999998888889999999999999
Q ss_pred CCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEEee
Q 029929 90 VNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 90 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
++++++++.+. .|+..+.... ++.|+++|+||+|+..... .....++...++...+.++++++|
T Consensus 81 v~~~~sf~~~~~~~~~~i~~~~-----~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 155 (189)
T cd04134 81 VDSPDSLENVESKWLGEIREHC-----PGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECS 155 (189)
T ss_pred CCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 99999999886 5877776543 2679999999999975421 123455666777766667899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcC
Q 029929 159 AKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|++|.|++++|.+|.+.+....
T Consensus 156 Ak~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 156 AKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCcCCCHHHHHHHHHHHHhccc
Confidence 9999999999999999988654
No 53
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=5.8e-33 Score=187.32 Aligned_cols=161 Identities=25% Similarity=0.496 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|+|||||+.++..+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++|+||
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 6999999999999999999999888877778775433 445567788889999999999999988889999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+. .|...+.... ++.|+++|+||+|+.+.. .+.+..++...++...+..++++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 155 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 155 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEe
Confidence 999999999985 5777665432 268999999999996431 134677888888888876699999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~ 175 (185)
||++|.|++++|+.+++.
T Consensus 156 Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 156 SALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cccccCCHHHHHHHHHHh
Confidence 999999999999999864
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=1.2e-32 Score=183.82 Aligned_cols=160 Identities=33% Similarity=0.604 Sum_probs=135.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++|+
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~ 80 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF 80 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence 6899999999999999999999888777777776444 455567777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++.+++.+..|+..+.+.... .+.|+++|+||+|+.. +....++...+....+ ++++++||++|.|++++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~~---~~~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (162)
T cd04138 81 AINSRKSFEDIHTYREQIKRVKDS---DDVPMVLVGNKCDLAA---RTVSSRQGQDLAKSYG-IPYIETSAKTRQGVEEA 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccccc---ceecHHHHHHHHHHhC-CeEEEecCCCCCCHHHH
Confidence 999999999998888888765432 3679999999999976 3455666777766665 79999999999999999
Q ss_pred HHHHHHHH
Q 029929 169 FECIAKNA 176 (185)
Q Consensus 169 ~~~i~~~~ 176 (185)
+++|++.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04138 154 FYTLVREI 161 (162)
T ss_pred HHHHHHHh
Confidence 99998764
No 55
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.8e-32 Score=184.52 Aligned_cols=163 Identities=39% Similarity=0.677 Sum_probs=141.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-ccccchhccCcEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCCVL 86 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~i~ 86 (185)
.++|+++|++|+|||||+++++...+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++.+|++++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~ 81 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF 81 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence 4899999999999999999999988887778888888877888888888999999999998876 467788899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc---CC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE---GF 163 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~ 163 (185)
|+|+++++++..+..|+..+...... .++|+++|+||+|+... +....++...++.... ++++++||++ +.
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~~~ 155 (170)
T cd04115 82 VYDVTNMASFHSLPSWIEECEQHSLP---NEVPRILVGNKCDLREQ--IQVPTDLAQRFADAHS-MPLFETSAKDPSEND 155 (170)
T ss_pred EEECCCHHHHHhHHHHHHHHHHhcCC---CCCCEEEEEECccchhh--cCCCHHHHHHHHHHcC-CcEEEEeccCCcCCC
Confidence 99999999999999999888765433 36899999999999764 4556667777777665 8999999999 88
Q ss_pred CHHHHHHHHHHHH
Q 029929 164 NVEAAFECIAKNA 176 (185)
Q Consensus 164 ~i~~~~~~i~~~~ 176 (185)
+++++|..+++.+
T Consensus 156 ~i~~~f~~l~~~~ 168 (170)
T cd04115 156 HVEAIFMTLAHKL 168 (170)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998876
No 56
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.3e-32 Score=190.88 Aligned_cols=166 Identities=20% Similarity=0.431 Sum_probs=140.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+|+|..|+|||||+.++....++..+.|+.+..+. ..+.+++..+.+.+|||+|++.+..++..+++.+|++|+||
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf 80 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF 80 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence 69999999999999999999999998888899876664 56678888899999999999999999999999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+. .|...+.... ++.|+++|+||+|+.... ...+..++...++...+.++|++|
T Consensus 81 dis~~~Sf~~i~~~w~~~~~~~~-----~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~ 155 (222)
T cd04173 81 DISRPETLDSVLKKWQGETQEFC-----PNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVEC 155 (222)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEc
Confidence 999999999984 5665554332 378999999999996531 123567788888888885699999
Q ss_pred eeccCCC-HHHHHHHHHHHHhhcC
Q 029929 158 SAKEGFN-VEAAFECIAKNALKNE 180 (185)
Q Consensus 158 s~~~~~~-i~~~~~~i~~~~~~~~ 180 (185)
||+++++ ++++|...+.++..+.
T Consensus 156 SAk~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 156 SSRSSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred CCCcCCcCHHHHHHHHHHHHHhcc
Confidence 9999985 9999999999887654
No 57
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=9.4e-33 Score=184.69 Aligned_cols=161 Identities=32% Similarity=0.568 Sum_probs=135.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|+|||||++++....+.+.+.++.+ +.....+.+++....+.+|||||++.+..++..+++.+|++++|+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~ 80 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVY 80 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEEE
Confidence 7999999999999999999999988777667664 444566777777788999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|...+...... .++|+++|+||+|+... ......+...+....+ ++++++||++|.|+.++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~---~~~piviv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 154 (163)
T cd04176 81 SLVNQQTFQDIKPMRDQIVRVKGY---EKVPIILVGNKVDLESE--REVSSAEGRALAEEWG-CPFMETSAKSKTMVNEL 154 (163)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--CccCHHHHHHHHHHhC-CEEEEecCCCCCCHHHH
Confidence 999999999999998888765322 37899999999998753 3444555666666665 79999999999999999
Q ss_pred HHHHHHHH
Q 029929 169 FECIAKNA 176 (185)
Q Consensus 169 ~~~i~~~~ 176 (185)
+.++++.+
T Consensus 155 ~~~l~~~l 162 (163)
T cd04176 155 FAEIVRQM 162 (163)
T ss_pred HHHHHHhc
Confidence 99998754
No 58
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=8.8e-33 Score=184.62 Aligned_cols=161 Identities=45% Similarity=0.798 Sum_probs=149.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|+.|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+||++|++.+......+++.+|++|+|||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd 80 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD 80 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999998999999889999999999999999999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 169 (185)
.+++++++.+..|+..+..... .+.|+++++||.|+... +++..++++.++...+ .+++++|++++.|+.++|
T Consensus 81 ~~~~~S~~~~~~~~~~i~~~~~----~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~~~f 153 (162)
T PF00071_consen 81 VTDEESFENLKKWLEEIQKYKP----EDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG-VPYFEVSAKNGENVKEIF 153 (162)
T ss_dssp TTBHHHHHTHHHHHHHHHHHST----TTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT-SEEEEEBTTTTTTHHHHH
T ss_pred cccccccccccccccccccccc----ccccceeeecccccccc--ccchhhHHHHHHHHhC-CEEEEEECCCCCCHHHHH
Confidence 9999999999999999988766 25799999999999863 6778889999999888 999999999999999999
Q ss_pred HHHHHHHh
Q 029929 170 ECIAKNAL 177 (185)
Q Consensus 170 ~~i~~~~~ 177 (185)
..+++.+.
T Consensus 154 ~~~i~~i~ 161 (162)
T PF00071_consen 154 QELIRKIL 161 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
No 59
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=1.7e-32 Score=188.19 Aligned_cols=170 Identities=25% Similarity=0.402 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhcc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRG 80 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~ 80 (185)
++|+|+|.+|+|||||++++.+..+...+.|+.+.+.....+.+++..+.+.+|||||...+.. .....++.
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ 80 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN 80 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence 5899999999999999999999998877888887666666667788888999999999654321 12334688
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++|+|||++++++++.+..|+..+...... ...++|+++|+||+|+... +....+++..++.....++++++||+
T Consensus 81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~-~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 81 SRAFILVYDICSPDSFHYVKLLRQQILETRPA-GNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccc-CCCCCCEEEEEECcccccc--ccccHHHHHHHHHHhcCCcEEEecCC
Confidence 99999999999999999999998888765421 2337899999999999764 44455566666544445899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCC
Q 029929 161 EGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~ 181 (185)
+|.|++++|+.+++.+..+.+
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 158 YNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCC
Confidence 999999999999998876544
No 60
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.9e-32 Score=183.58 Aligned_cols=162 Identities=28% Similarity=0.444 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|+|||||++++.+..+...+.++.+..+ ..........+.+.+|||||++.+..+...+++.+|++++||
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 7899999999999999999999988777777765444 444556667789999999999998888888899999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+...... ..++.|+++|+||+|+... ++...++...++...+ ++++++||++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~SA~~g~~v~~~ 156 (165)
T cd04140 81 SVTSKQSLEELKPIYELICEIKGN-NIEKIPIMLVGNKCDESHK--REVSSNEGAACATEWN-CAFMETSAKTNHNVQEL 156 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcC-CCCCCCEEEEEECcccccc--CeecHHHHHHHHHHhC-CcEEEeecCCCCCHHHH
Confidence 999999999998888877654322 2247899999999999763 4455666666666655 78999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
+++|+..
T Consensus 157 f~~l~~~ 163 (165)
T cd04140 157 FQELLNL 163 (165)
T ss_pred HHHHHhc
Confidence 9999864
No 61
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2e-32 Score=182.75 Aligned_cols=160 Identities=41% Similarity=0.685 Sum_probs=139.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||++++.+..+...+.++.+.++....+..++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~ 80 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence 48999999999999999999999988888888888888888888887789999999999999888899999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... .+.|+++++||+|+... .....++...+....+ ++++++|++++.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~l 153 (161)
T cd01861 81 DITNRQSFDNTDKWIDDVRDERG----NDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN-AMFIETSAKAGHNVKEL 153 (161)
T ss_pred ECcCHHHHHHHHHHHHHHHHhCC----CCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC-CEEEEEeCCCCCCHHHH
Confidence 99999999999888887754322 26799999999999643 4556666777766665 89999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
+++|.+.
T Consensus 154 ~~~i~~~ 160 (161)
T cd01861 154 FRKIASA 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 62
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3.1e-32 Score=182.30 Aligned_cols=162 Identities=31% Similarity=0.592 Sum_probs=136.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.+||+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||+.++..++..+++.+|++++|
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 37999999999999999999998887766666665443 44456777778999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+...... .+.|+++++||+|+... .....++...++...+ ++++++||++|.|+++
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piiiv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 81 FSVTDRGSFEEVDKFHTQILRVKDR---DEFPMILVGNKADLEHQ--RKVSREEGQELARKLK-IPYIETSAKDRLNVDK 154 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCC---CCCCEEEEeeCcccccc--ceecHHHHHHHHHHcC-CcEEEeeCCCCCCHHH
Confidence 9999999999999898887765332 36799999999999764 3455666777777766 7999999999999999
Q ss_pred HHHHHHHHH
Q 029929 168 AFECIAKNA 176 (185)
Q Consensus 168 ~~~~i~~~~ 176 (185)
++++|++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 63
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=3.2e-32 Score=188.79 Aligned_cols=167 Identities=37% Similarity=0.664 Sum_probs=145.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+||+++|++|+|||||++++....+...+.++.+.++....+.+.+..+.+.+|||+|+..+...+..+++.+|++++
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 45899999999999999999999998887778888888877788888888899999999999988888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+..... .+.|+++++||+|+... +....++...++...+ ++++++||+++.|++
T Consensus 85 v~D~~~~~s~~~l~~~~~~~~~~~~----~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~e~Sa~~~~~v~ 157 (210)
T PLN03108 85 VYDITRRETFNHLASWLEDARQHAN----ANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-LIFMEASAKTAQNVE 157 (210)
T ss_pred EEECCcHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 9999999999999888887765432 36799999999999764 4566777888887776 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
++|.++++.+.++.
T Consensus 158 e~f~~l~~~~~~~~ 171 (210)
T PLN03108 158 EAFIKTAAKIYKKI 171 (210)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887653
No 64
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=4.3e-32 Score=181.45 Aligned_cols=162 Identities=43% Similarity=0.747 Sum_probs=141.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.+||+++|++|+|||||++++.+..+.....++.+..+....+.+++....+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v 80 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV 80 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence 37999999999999999999999998877778888777778888888888999999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+..... +..|+++++||+|+... .....++...+....+ .+++++||++|.|+.+
T Consensus 81 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~~ 153 (163)
T cd01860 81 YDITSEESFEKAKSWVKELQRNAS----PNIIIALVGNKADLESK--RQVSTEEAQEYADENG-LLFFETSAKTGENVNE 153 (163)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--CcCCHHHHHHHHHHcC-CEEEEEECCCCCCHHH
Confidence 999999999999999888876542 37899999999998753 4455666777777666 8899999999999999
Q ss_pred HHHHHHHHH
Q 029929 168 AFECIAKNA 176 (185)
Q Consensus 168 ~~~~i~~~~ 176 (185)
++++|.+.+
T Consensus 154 l~~~l~~~l 162 (163)
T cd01860 154 LFTEIAKKL 162 (163)
T ss_pred HHHHHHHHh
Confidence 999999876
No 65
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=5.4e-32 Score=185.73 Aligned_cols=166 Identities=34% Similarity=0.611 Sum_probs=140.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
+||+++|.+|+|||||++++.+..+.. .+.++.+..+....+.+++..+.+.+||++|++.+......+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv 80 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC 80 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence 489999999999999999999988764 5677887777777788888889999999999998888888889999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--ceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
||++++++++.+..|+..+.... .+.|+++|+||+|+.... .+....+++..++...+ ++++++||+++.|+
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 154 (193)
T cd04118 81 YDLTDSSSFERAKFWVKELQNLE-----EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-AQHFETSSKTGQNV 154 (193)
T ss_pred EECCCHHHHHHHHHHHHHHHhcC-----CCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 99999999999888888775432 267999999999986532 23444566777776665 78999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
++++++|.+.+..+.
T Consensus 155 ~~l~~~i~~~~~~~~ 169 (193)
T cd04118 155 DELFQKVAEDFVSRA 169 (193)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999887653
No 66
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=3.8e-32 Score=191.84 Aligned_cols=166 Identities=30% Similarity=0.497 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|+|||||++++....+...+.++.+ +.....+.+++..+.+.+|||+|++.+..+...++..+|++|+||
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 5899999999999999999999888877777775 555667778888899999999999988888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCC-----CCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASP-----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
|++++++|+.+..|+..+...... ....+.|+++|+||+|+... +++..+++.+++.....+.++++||++|.
T Consensus 80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~~~~~~~~~~evSAktg~ 157 (247)
T cd04143 80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLVGGDENCAYFEVSAKKNS 157 (247)
T ss_pred eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHHHhcCCCEEEEEeCCCCC
Confidence 999999999999998888754221 12347899999999999753 44566677776654444789999999999
Q ss_pred CHHHHHHHHHHHHh
Q 029929 164 NVEAAFECIAKNAL 177 (185)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (185)
|+++++++|.+...
T Consensus 158 gI~elf~~L~~~~~ 171 (247)
T cd04143 158 NLDEMFRALFSLAK 171 (247)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998764
No 67
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=3e-32 Score=183.11 Aligned_cols=165 Identities=25% Similarity=0.360 Sum_probs=136.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
++.+||+++|.+|+|||||++++.+..+. ..+.+|.+..+....+.+++..+.+.+||++|++.+......+++.+|++
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~ 81 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA 81 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence 46799999999999999999999999887 77888888777767777788778899999999999888888899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++++++.+..|+..+.. ..++|+++|+||+|+.+. ......+...++...+...++++||+++.|
T Consensus 82 llv~d~~~~~s~~~~~~~~~~~~~------~~~~p~iiv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 153 (169)
T cd01892 82 CLVYDSSDPKSFSYCAEVYKKYFM------LGEIPCLFVAAKADLDEQ--QQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred EEEEeCCCHHHHHHHHHHHHHhcc------CCCCeEEEEEEccccccc--ccccccCHHHHHHHcCCCCCEEEEeccCcc
Confidence 999999999999988777765421 126799999999999654 222233445555555533579999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029929 165 VEAAFECIAKNALK 178 (185)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (185)
++++++.|.+.+..
T Consensus 154 v~~lf~~l~~~~~~ 167 (169)
T cd01892 154 SNELFTKLATAAQY 167 (169)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998864
No 68
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=4.2e-32 Score=185.42 Aligned_cols=166 Identities=33% Similarity=0.561 Sum_probs=137.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
++|+++|.+|+|||||++++.++.+...+.++.+..+.. .+... +..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999999887777777666543 34444 6678999999999999988888899999999999
Q ss_pred EECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--ceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 88 YDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--SRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 88 ~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
+|++++++++.+. .|+..+.... ++.|+++|+||+|+.... .+....++..+++...+..+++++||++|.|
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 154 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFC-----PGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMEN 154 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCC
Confidence 9999999999985 4776665432 267999999999996532 2345677788888877744899999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+.+++..+.+.+....
T Consensus 155 v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 155 VEEVFDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999988764
No 69
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=3.8e-32 Score=180.45 Aligned_cols=157 Identities=26% Similarity=0.479 Sum_probs=128.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|+.|+|||||+.++....+.....++ ...+ ...+.+++..+.+.+||++|++. ..+++.+|++++||
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 48999999999999999999988776654443 3333 45677788888899999999864 24567899999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++|+.+..|+..+..... ..+.|+++|+||+|+.....+.+..++..+++...+.++|++|||++|.|++++
T Consensus 74 d~~~~~sf~~~~~~~~~i~~~~~---~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~ 150 (158)
T cd04103 74 SLENEASFQTVYNLYHQLSSYRN---ISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERV 150 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHH
Confidence 99999999999999998876542 236799999999998654446777788888887665589999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
|..+++.
T Consensus 151 f~~~~~~ 157 (158)
T cd04103 151 FQEAAQK 157 (158)
T ss_pred HHHHHhh
Confidence 9999864
No 70
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=4.8e-32 Score=187.99 Aligned_cols=161 Identities=39% Similarity=0.651 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||++++....+.. ..++.+.++..... ..+.+.+|||+|++.+..+...+++.+|++|+||
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 589999999999999999999998764 46666655543332 4578999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------CceeecHHHHHHHHHhcCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NSRVVSEKKAKAWCASKGN 151 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----------------~~~~~~~~~~~~~~~~~~~ 151 (185)
|++++++++.+..|+..+.... ..+.|+++|+||+|+... ..+.+..++...++...+.
T Consensus 76 Dvt~~~Sf~~l~~~~~~l~~~~----~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~ 151 (220)
T cd04126 76 DVSNVQSLEELEDRFLGLTDTA----NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINK 151 (220)
T ss_pred ECCCHHHHHHHHHHHHHHHHhc----CCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCc
Confidence 9999999999988887776532 236799999999999751 1367778889888887652
Q ss_pred -------------CcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 152 -------------IPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 152 -------------~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
++|+++||++|.|++++|..+++.+.+
T Consensus 152 ~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~ 191 (220)
T cd04126 152 YKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred cccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999999988764
No 71
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.2e-32 Score=172.07 Aligned_cols=168 Identities=36% Similarity=0.670 Sum_probs=154.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+|++++|...+|||||+.+..+..+.+..-++.+.++..+.+......+++++|||.|++.++.+...++++++++|
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfi 98 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFI 98 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEE
Confidence 35689999999999999999999999999999999999999888877778899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
++||++|.+++..++.|...+.-.... +.|+|+|+||||+..+ +.+.-+..+.++..++ ..++++||+.+.++
T Consensus 99 LmyDitNeeSf~svqdw~tqIktysw~----naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG-fefFEtSaK~NinV 171 (193)
T KOG0093|consen 99 LMYDITNEESFNSVQDWITQIKTYSWD----NAQVILVGNKCDMDSE--RVISHERGRQLADQLG-FEFFETSAKENINV 171 (193)
T ss_pred EEEecCCHHHHHHHHHHHHHheeeecc----CceEEEEecccCCccc--eeeeHHHHHHHHHHhC-hHHhhhcccccccH
Confidence 999999999999999999988765443 8899999999999876 8899999999999998 89999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
+++|+.++..+-.+.
T Consensus 172 k~~Fe~lv~~Ic~km 186 (193)
T KOG0093|consen 172 KQVFERLVDIICDKM 186 (193)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988876543
No 72
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=100.00 E-value=8.6e-32 Score=179.67 Aligned_cols=160 Identities=38% Similarity=0.676 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||++.+......+++.+|++++|+
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~ 80 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY 80 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence 58999999999999999999998887767788887777777777777889999999999988888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|.+++++++.+..|+..+..+... .+.|+++|+||+|+.. .....++...+....+ ++++++|+++|.|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~---~~~~~~iv~nK~D~~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~~ 153 (161)
T cd01863 81 DVTRRDTFTNLETWLNELETYSTN---NDIVKMLVGNKIDKEN---REVTREEGLKFARKHN-MLFIETSAKTRDGVQQA 153 (161)
T ss_pred ECCCHHHHHhHHHHHHHHHHhCCC---CCCcEEEEEECCcccc---cccCHHHHHHHHHHcC-CEEEEEecCCCCCHHHH
Confidence 999999999998888888766442 3779999999999984 3345566777777665 89999999999999999
Q ss_pred HHHHHHH
Q 029929 169 FECIAKN 175 (185)
Q Consensus 169 ~~~i~~~ 175 (185)
++++.+.
T Consensus 154 ~~~~~~~ 160 (161)
T cd01863 154 FEELVEK 160 (161)
T ss_pred HHHHHHh
Confidence 9999875
No 73
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.5e-33 Score=174.17 Aligned_cols=166 Identities=37% Similarity=0.633 Sum_probs=152.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..|+|+++|.+|+|||.|+++|+..-+++....+++.++-.+.+.+.+..+++++|||+|+++|++..+.|++.+|++|+
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil 85 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL 85 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||++..++|+-+..|+.++..+... ++-.|+|+||+|+.+. +++..+..++|..... .-|.++||++.++++
T Consensus 86 vydiscqpsfdclpewlreie~yan~----kvlkilvgnk~d~~dr--revp~qigeefs~~qd-myfletsakea~nve 158 (213)
T KOG0095|consen 86 VYDISCQPSFDCLPEWLREIEQYANN----KVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-MYFLETSAKEADNVE 158 (213)
T ss_pred EEecccCcchhhhHHHHHHHHHHhhc----ceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-hhhhhhcccchhhHH
Confidence 99999999999999999999888765 5567899999999876 7788888888887754 778999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
.+|..+.-.+...
T Consensus 159 ~lf~~~a~rli~~ 171 (213)
T KOG0095|consen 159 KLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=1.1e-31 Score=179.59 Aligned_cols=160 Identities=32% Similarity=0.600 Sum_probs=133.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
+||+++|.+|||||||++++... .+...+.++.+.++....+.+. +....+.+|||||+..+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999865 5667778888877766666665 46789999999999988888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+.+. .+........+....+ ++++++||+++.|+
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 152 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-----KHMPGVLVGNKMDLADK--AEVTDAQAQAFAQANQ-LKFFKTSALRGVGY 152 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEeCCCCCCh
Confidence 9999999999999999988876543 26799999999999754 3344445555555555 78999999999999
Q ss_pred HHHHHHHHHHH
Q 029929 166 EAAFECIAKNA 176 (185)
Q Consensus 166 ~~~~~~i~~~~ 176 (185)
++++++|.+.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
No 75
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=7.1e-32 Score=184.93 Aligned_cols=156 Identities=30% Similarity=0.631 Sum_probs=135.2
Q ss_pred EcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh
Q 029929 14 LGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM 93 (185)
Q Consensus 14 iG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~ 93 (185)
+|..|||||||+++++...+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++|+|||++++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~ 80 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR 80 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence 59999999999999998888877888988888888888888889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHH
Q 029929 94 KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIA 173 (185)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 173 (185)
.+++.+..|+..+.+.. .++|+++|+||+|+... ....+. ..++...+ +++++|||++|.|+.++|.+|+
T Consensus 81 ~S~~~i~~w~~~i~~~~-----~~~piilvgNK~Dl~~~---~v~~~~-~~~~~~~~-~~~~e~SAk~~~~v~~~F~~l~ 150 (200)
T smart00176 81 VTYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDVKDR---KVKAKS-ITFHRKKN-LQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred HHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999887653 27899999999998642 233333 34555554 8999999999999999999999
Q ss_pred HHHhhc
Q 029929 174 KNALKN 179 (185)
Q Consensus 174 ~~~~~~ 179 (185)
+.+...
T Consensus 151 ~~i~~~ 156 (200)
T smart00176 151 RKLIGD 156 (200)
T ss_pred HHHHhc
Confidence 988765
No 76
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=1.4e-31 Score=179.78 Aligned_cols=163 Identities=33% Similarity=0.609 Sum_probs=137.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|.+|||||||++++.+..+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++.++++++|+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 7899999999999999999999888777777776443 455667777789999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|.+++++++.+..|...+..... ..+.|+++++||.|+... +....++...+....+..+++++||+++.|+.++
T Consensus 81 ~~~~~~s~~~~~~~~~~i~~~~~---~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~ 155 (168)
T cd04177 81 SVTSEASLNELGELREQVLRIKD---SDNVPMVLVGNKADLEDD--RQVSREDGVSLSQQWGNVPFYETSARKRTNVDEV 155 (168)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC---CCCCCEEEEEEChhcccc--CccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHH
Confidence 99999999999988888876432 237899999999999754 4455666666666665578999999999999999
Q ss_pred HHHHHHHHh
Q 029929 169 FECIAKNAL 177 (185)
Q Consensus 169 ~~~i~~~~~ 177 (185)
++++...+.
T Consensus 156 f~~i~~~~~ 164 (168)
T cd04177 156 FIDLVRQII 164 (168)
T ss_pred HHHHHHHHh
Confidence 999998664
No 77
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.9e-31 Score=185.30 Aligned_cols=168 Identities=36% Similarity=0.626 Sum_probs=138.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...+||+++|.+|+|||||++++....+. ...++.+.+.....+.+++..+.+.+|||||++.+..++..+++.+|++|
T Consensus 12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 12 DLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 45689999999999999999999988764 55677777777777778888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 86 LVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
+|+|.+++++++.+.. |...+..... ..+.|+++|+||+|+... +....++...++...+ ++++++||+++.|
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~---~~~~~~ilv~NK~Dl~~~--~~i~~~~~~~~~~~~~-~~~~e~SAk~~~~ 164 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYST---NQDCVKMLVGNKVDRESE--RDVSREEGMALAKEHG-CLFLECSAKTREN 164 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 9999999999999876 4444432222 225689999999999764 3455666666666665 7899999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+++++++|.+.+....
T Consensus 165 v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 165 VEQCFEELALKIMEVP 180 (211)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999887654
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=2e-31 Score=177.94 Aligned_cols=161 Identities=42% Similarity=0.706 Sum_probs=136.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++++..+.....++.+.......+...+....+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence 58999999999999999999998887666667766666666777777788999999999988888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|...+...... +.|+++++||+|+... .....+...++....+ .+++++|+++++|++++
T Consensus 81 d~~~~~s~~~~~~~~~~i~~~~~~----~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gi~~~ 153 (162)
T cd04123 81 DITDADSFQKVKKWIKELKQMRGN----NISLVIVGNKIDLERQ--RVVSKSEAEEYAKSVG-AKHFETSAKTGKGIEEL 153 (162)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCCC----CCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHHHH
Confidence 999999999998888887665432 6799999999999854 3445566666666555 78999999999999999
Q ss_pred HHHHHHHH
Q 029929 169 FECIAKNA 176 (185)
Q Consensus 169 ~~~i~~~~ 176 (185)
+++|.+.+
T Consensus 154 ~~~l~~~~ 161 (162)
T cd04123 154 FLSLAKRM 161 (162)
T ss_pred HHHHHHHh
Confidence 99998875
No 79
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=1.1e-31 Score=181.31 Aligned_cols=162 Identities=28% Similarity=0.532 Sum_probs=135.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEEC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (185)
|+++|.+|+|||||++++....+...+.++....+ ...+.+++..+.+.+|||||++.+..+...+++.+|++|+|||+
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 58999999999999999999998877777765444 34566778888999999999999988888899999999999999
Q ss_pred CChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 91 NVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 91 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
+++++++.+. .|+..+.... ++.|+++|+||+|+.... ...+..++...++...+..+++++||
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 154 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFC-----PNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSA 154 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecC
Confidence 9999999985 5877776543 267999999999997532 12356677778888877558999999
Q ss_pred ccCCCHHHHHHHHHHHHhh
Q 029929 160 KEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (185)
++|.|++++++.+++.+.+
T Consensus 155 ~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 155 LTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CCCCCHHHHHHHHHHHhcC
Confidence 9999999999999988754
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=2e-31 Score=179.85 Aligned_cols=160 Identities=30% Similarity=0.490 Sum_probs=133.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||+.++.+..+...+.++. .+.....+.+++..+.+.+||+||+..+...+..+++.+|++|+||
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999999999999888877776665 3444556777777889999999999999988888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+. .|+..+.... ++.|+++++||+|+.... .+.+..++...++...+..+++++
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~ 154 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHN-----PKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIEC 154 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEE
Confidence 999999999874 5777765432 257999999999996532 356677788888887775599999
Q ss_pred eeccCCCHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAK 174 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~ 174 (185)
||++|.|++++++.++.
T Consensus 155 Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 155 SALTQKNLKEVFDTAIL 171 (173)
T ss_pred eCCCCCCHHHHHHHHHh
Confidence 99999999999998764
No 81
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=2.6e-31 Score=185.43 Aligned_cols=164 Identities=27% Similarity=0.388 Sum_probs=133.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc-cCcEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR-GADCCVL 86 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~d~~i~ 86 (185)
+||+++|.+|+|||||++++....+. ..+.++.+.+.....+.+++....+.+||++|++. .....++. .+|++++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil 78 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV 78 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence 58999999999999999999877775 55556655466667777788888999999999872 23334556 8999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||++++.+++.+..|+..+..... ..++|+++|+||+|+... +.+..++...++...+ ++++++||+++.|++
T Consensus 79 V~d~td~~S~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~SA~~~~gv~ 152 (221)
T cd04148 79 VYSVTDRSSFERASELRIQLRRNRQ---LEDRPIILVGNKSDLARS--REVSVQEGRACAVVFD-CKFIETSAGLQHNVD 152 (221)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEChhcccc--ceecHHHHHHHHHHcC-CeEEEecCCCCCCHH
Confidence 9999999999999888888765432 237899999999999765 4566666777777666 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
+++++|++.+...+
T Consensus 153 ~l~~~l~~~~~~~~ 166 (221)
T cd04148 153 ELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999887443
No 82
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=5.3e-31 Score=177.16 Aligned_cols=164 Identities=38% Similarity=0.649 Sum_probs=138.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|||||||++++....+.+...++.+.+.....+.+.+..+.+.+||+||+..+......+++.+|+++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 34589999999999999999999988877777788877777777888888889999999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. ++...+....+..... .+++++|+++|.|+
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~~i~v~NK~D~~~~--~~i~~~~~~~~~~~~~-~~~~~~Sa~~~~gv 157 (169)
T cd04114 85 LTYDITCEESFRCLPEWLREIEQYAN----NKVITILVGNKIDLAER--REVSQQRAEEFSDAQD-MYYLETSAKESDNV 157 (169)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEeeCCCCCCH
Confidence 99999999999988888887755432 25799999999998754 4445555566655555 78999999999999
Q ss_pred HHHHHHHHHHH
Q 029929 166 EAAFECIAKNA 176 (185)
Q Consensus 166 ~~~~~~i~~~~ 176 (185)
++++++|.+.+
T Consensus 158 ~~l~~~i~~~~ 168 (169)
T cd04114 158 EKLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 83
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=9.8e-33 Score=174.58 Aligned_cols=169 Identities=37% Similarity=0.670 Sum_probs=155.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...|+++++|...+|||||+-+++.++|......+....+..+.+.+++....+.+|||+|++.|..+-..|++.++++
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 45679999999999999999999999999988888888888888899999999999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|||+++.++|+....|..++..+.-. .+.++||+||+||..+ +.+..++...++...+ +.++++||+.+.|
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGn----ei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG-A~y~eTSAk~N~G 162 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGN----EIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG-ALYMETSAKDNVG 162 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCC----eeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc-hhheecccccccC
Confidence 9999999999999999999999877644 5678999999999876 8899999999999988 8999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+.++|+.|...+++..
T Consensus 163 i~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 163 ISELFESLTAKMIEHS 178 (218)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887654
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=4.5e-31 Score=178.31 Aligned_cols=162 Identities=26% Similarity=0.449 Sum_probs=134.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++....+...+.++.... ....+.+++..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 589999999999999999999998877666666433 3445667788888999999999999888888999999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|.+++++++.+. .|...+... .++.|+++|+||+|+.+.. .+....++...++...+..+++++
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~-----~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 154 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEY-----APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVEC 154 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhh-----CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999885 566666533 2378999999999986532 124556778888888875689999
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~ 176 (185)
||++|.|++++|+.+++.+
T Consensus 155 Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 155 SALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCcCCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 85
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=172.23 Aligned_cols=172 Identities=36% Similarity=0.692 Sum_probs=152.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
.+.++++|+|..-+|||+|++.++..++.....||.+.++....+.. ++..+++++|||+|++.|++....|++++-++
T Consensus 6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 45799999999999999999999999999999999999887776655 44568999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|||++|.++|+.+..|..+...+.. .+.++-+.+|++|+||... +++..++.++++...+ ..|+++|+++|.|
T Consensus 86 llvyditnr~sfehv~~w~~ea~m~~q--~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg-M~FVETSak~g~N 160 (213)
T KOG0091|consen 86 LLVYDITNRESFEHVENWVKEAAMATQ--GPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG-MAFVETSAKNGCN 160 (213)
T ss_pred EEEEeccchhhHHHHHHHHHHHHHhcC--CCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC-ceEEEecccCCCc
Confidence 999999999999999999998776655 2334446789999999966 9999999999999888 9999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 029929 165 VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~~ 182 (185)
+++.+..|.+.+...-++
T Consensus 161 VeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 161 VEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999988765443
No 86
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=100.00 E-value=9e-31 Score=173.92 Aligned_cols=158 Identities=47% Similarity=0.858 Sum_probs=138.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||++++.+..+...+.++.+.++.......++....+.+||+||+..+......+++.+|++++|+
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~ 80 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY 80 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence 58999999999999999999999988887888888888888888888889999999999998888999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++++++.+..|+..+..... ...|+++++||+|+... .....++...+..... .+++++|++++.|++++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~sa~~~~~i~~~ 153 (159)
T cd00154 81 DITNRESFENLDKWLKELKEYAP----ENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKENG-LLFFETSAKTGENVEEL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEEccccccc--ccccHHHHHHHHHHcC-CeEEEEecCCCCCHHHH
Confidence 99999999999889888876643 26799999999999733 4456677777777654 89999999999999999
Q ss_pred HHHHH
Q 029929 169 FECIA 173 (185)
Q Consensus 169 ~~~i~ 173 (185)
+++|.
T Consensus 154 ~~~i~ 158 (159)
T cd00154 154 FQSLA 158 (159)
T ss_pred HHHHh
Confidence 99986
No 87
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=100.00 E-value=1.7e-30 Score=173.75 Aligned_cols=163 Identities=34% Similarity=0.557 Sum_probs=136.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|+|||||+++++...+.....++.... .......++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999999999999888776666665433 3455667778889999999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|++++.+++.+..|+..+..... ..+.|+++|+||+|+... ..........+....+ .+++++||+++.|++++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~---~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l 153 (164)
T cd04139 80 SITDMESFTATAEFREQILRVKD---DDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG-VPYVETSAKTRQNVEKA 153 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEeeCCCCCCHHHH
Confidence 99999999999888888877644 237899999999999763 3345555666666665 79999999999999999
Q ss_pred HHHHHHHHhh
Q 029929 169 FECIAKNALK 178 (185)
Q Consensus 169 ~~~i~~~~~~ 178 (185)
++++.+.+..
T Consensus 154 ~~~l~~~~~~ 163 (164)
T cd04139 154 FYDLVREIRQ 163 (164)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 88
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=5.8e-31 Score=176.35 Aligned_cols=162 Identities=28% Similarity=0.479 Sum_probs=131.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~ 88 (185)
+|+++|++|+|||||+++++...+...+.++....+ ...+.+++..+.+.+||+||+.. +......+++.+|++|+|+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 589999999999999999998877666666654333 45566777888999999999885 3445667889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC-CHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-NVEA 167 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~ 167 (185)
|++++++++.+..|+..+..... ...+.|+++|+||+|+... +....++...++...+ ++++++||+++. |+++
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~--~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~~~~v~~ 154 (165)
T cd04146 80 SITDRSSFDEISQLKQLIREIKK--RDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG-CLFFEVSAAEDYDGVHS 154 (165)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhc--CCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC-CEEEEeCCCCCchhHHH
Confidence 99999999999888887766432 1236799999999998654 4456677777777776 899999999995 9999
Q ss_pred HHHHHHHHHh
Q 029929 168 AFECIAKNAL 177 (185)
Q Consensus 168 ~~~~i~~~~~ 177 (185)
+|.++++.+.
T Consensus 155 ~f~~l~~~~~ 164 (165)
T cd04146 155 VFHELCREVR 164 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 89
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=9.6e-31 Score=178.97 Aligned_cols=160 Identities=25% Similarity=0.423 Sum_probs=126.3
Q ss_pred eeEEEEEcCCCCCHHHHHH-HHHhCC-----CCCCccCccee-eeEEEE--------EEECCcEEEEEEecCCChhhhcc
Q 029929 8 LLKVIILGDSGVGKTSLMN-QYVNRK-----FSNQYKATIGA-DFLTKE--------VQFEDRLFTLQIWDTAGQERFQS 72 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~ 72 (185)
.+||+++|..|+|||||+. ++.+.. +...+.||.+. +..... ..+++..+.+.+|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 3799999999999999995 555443 34556677642 222211 24677889999999999875 2
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-----------------Cc
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGG-----------------NS 134 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~-----------------~~ 134 (185)
....+++.+|++|+|||++++++++.+. .|...+.... ++.|+++|+||+|+... ..
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-----~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~ 154 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-----PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNA 154 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhccccccchhhhcccccccccccC
Confidence 4556889999999999999999999996 5888776543 26799999999999642 13
Q ss_pred eeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 135 RVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+.+..+++++++...+ ++|++|||++|.|++++|+.++++
T Consensus 155 ~~V~~~e~~~~a~~~~-~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 155 DILPPETGRAVAKELG-IPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CccCHHHHHHHHHHhC-CEEEEcCCCCCCCHHHHHHHHHHh
Confidence 6778889999999887 799999999999999999999864
No 90
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.98 E-value=7.7e-31 Score=178.42 Aligned_cols=169 Identities=21% Similarity=0.283 Sum_probs=129.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
.++|+++|.+|||||||++++....+... .++.+.+.....+.. ++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~ 81 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF 81 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence 48999999999999999999998776543 566665554444443 3356889999999999888888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh--c---CCCcEEEeeecc
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS--K---GNIPYFETSAKE 161 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~s~~~ 161 (185)
|+|++++++++.+..++..+...... .+.|+++|+||+|+... ...+++..+... . ..++++++||++
T Consensus 82 v~D~~~~~~~~~~~~~~~~i~~~~~~---~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 154 (183)
T cd04152 82 VVDSVDVERMEEAKTELHKITRFSEN---QGVPVLVLANKQDLPNA----LSVSEVEKLLALHELSASTPWHVQPACAII 154 (183)
T ss_pred EEECCCHHHHHHHHHHHHHHHhhhhc---CCCcEEEEEECcCcccc----CCHHHHHHHhCccccCCCCceEEEEeeccc
Confidence 99999998888887777766654322 26799999999998643 223334433321 1 124689999999
Q ss_pred CCCHHHHHHHHHHHHhhcCCccc
Q 029929 162 GFNVEAAFECIAKNALKNEPQEE 184 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~~~~ 184 (185)
|.|+++++++|.+.+.+.+++.+
T Consensus 155 ~~gi~~l~~~l~~~l~~~~~~~~ 177 (183)
T cd04152 155 GEGLQEGLEKLYEMILKRRKMLR 177 (183)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999987766543
No 91
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.98 E-value=2.3e-30 Score=175.01 Aligned_cols=162 Identities=27% Similarity=0.524 Sum_probs=132.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
.||+++|++|||||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++..+|++++|+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 80 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY-VADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF 80 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccce-EEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence 5899999999999999999999988877777776544 345667777889999999999988888878889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcEEEe
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
|++++++++.+. .|...+.... .+.|+++|+||+|+..... ......+.++++...+..++++|
T Consensus 81 ~~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 155 (175)
T cd01870 81 SIDSPDSLENIPEKWTPEVKHFC-----PNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMEC 155 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhC-----CCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEe
Confidence 999999998885 4666665432 2679999999999865321 23345566777777665689999
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~ 176 (185)
||++|.|+++++++|.+++
T Consensus 156 Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 156 SAKTKEGVREVFEMATRAA 174 (175)
T ss_pred ccccCcCHHHHHHHHHHHh
Confidence 9999999999999998765
No 92
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=4.8e-30 Score=176.60 Aligned_cols=166 Identities=31% Similarity=0.445 Sum_probs=132.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|.+|+|||||++++....+...+.++.. +.....+.+.+..+.+.+||+||+..+..++..++..+|++|+|+|
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 689999999999999999999888766666654 3445567777777899999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 169 (185)
++++++++.+..|+..+...... .++|+++|+||+|+... ......+...+........+++++||++|.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 155 (198)
T cd04147 80 VDDPESFEEVERLREEILEVKED---KFVPIVVVGNKADSLEE-ERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVF 155 (198)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEEccccccc-cccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHH
Confidence 99999999999888888765443 26899999999999753 133334444443332223789999999999999999
Q ss_pred HHHHHHHhhcC
Q 029929 170 ECIAKNALKNE 180 (185)
Q Consensus 170 ~~i~~~~~~~~ 180 (185)
++|++.+....
T Consensus 156 ~~l~~~~~~~~ 166 (198)
T cd04147 156 KELLRQANLPY 166 (198)
T ss_pred HHHHHHhhccc
Confidence 99999876443
No 93
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=6.8e-30 Score=170.15 Aligned_cols=159 Identities=36% Similarity=0.655 Sum_probs=135.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|++|||||||++++++..+.....++.. +.....+.+.+..+.+.+||+||+..+......+++.+|++++|+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 689999999999999999998887777666665 5556666677777899999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 169 (185)
.+++++++.+..|+..+...... ...|+++++||+|+... .....+.+..+....+ .+++++|++++.|+++++
T Consensus 80 ~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~-~~~~~~S~~~~~~i~~l~ 153 (160)
T cd00876 80 ITDRESFEEIKGYREQILRVKDD---EDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG-CPFIETSAKDNINIDEVF 153 (160)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECCccccc--ceecHHHHHHHHHHcC-CcEEEeccCCCCCHHHHH
Confidence 99999999998888887765442 36799999999999864 4556677777777666 899999999999999999
Q ss_pred HHHHHH
Q 029929 170 ECIAKN 175 (185)
Q Consensus 170 ~~i~~~ 175 (185)
++|.+.
T Consensus 154 ~~l~~~ 159 (160)
T cd00876 154 KLLVRE 159 (160)
T ss_pred HHHHhh
Confidence 999875
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=2.5e-30 Score=173.90 Aligned_cols=159 Identities=19% Similarity=0.368 Sum_probs=124.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|.+|||||||++++.+..+. .+.+|.+..+. .+.+ ..+.+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~--~~~~--~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE--TVEY--KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE--EEEE--CCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 6899999999999999999987654 35666655543 2333 45789999999999888888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-----CCcEEEeeeccCCC
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-----NIPYFETSAKEGFN 164 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 164 (185)
++++++++.+..|+..+.... ...+.|+++|+||+|+... ...+++.++....+ .+.++++||++|.|
T Consensus 76 ~s~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 148 (169)
T cd04158 76 SSHRDRVSEAHSELAKLLTEK---ELRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred CCcHHHHHHHHHHHHHHhcCh---hhCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEeCcCCCCCC
Confidence 999999999888887776432 2225799999999999642 34455555443211 23688999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
++++|+||.+.+....
T Consensus 149 v~~~f~~l~~~~~~~~ 164 (169)
T cd04158 149 LYEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999887654
No 95
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.2e-29 Score=172.33 Aligned_cols=165 Identities=35% Similarity=0.536 Sum_probs=135.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
.||+++|.+|+|||||++++....+.....++..... ...+...+..+.+.+||+||+..+...+..++..+|++++|+
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 5899999999999999999998887766666665443 445566677788999999999998888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHH
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 168 (185)
|.++.++++.+..++..+...... .+.|+++|+||+|+... +....++...+....+ ++++++||+++.|+.++
T Consensus 81 d~~~~~~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~~l 154 (180)
T cd04137 81 SVTSRKSFEVVKVIYDKILDMLGK---ESVPIVLVGNKSDLHTQ--RQVSTEEGKELAESWG-AAFLESSARENENVEEA 154 (180)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEEchhhhhc--CccCHHHHHHHHHHcC-CeEEEEeCCCCCCHHHH
Confidence 999999999998888887765332 36799999999999753 3444555666666555 78999999999999999
Q ss_pred HHHHHHHHhhcC
Q 029929 169 FECIAKNALKNE 180 (185)
Q Consensus 169 ~~~i~~~~~~~~ 180 (185)
+.++.+.+...+
T Consensus 155 ~~~l~~~~~~~~ 166 (180)
T cd04137 155 FELLIEEIEKVE 166 (180)
T ss_pred HHHHHHHHHHhc
Confidence 999999887654
No 96
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.1e-30 Score=177.09 Aligned_cols=161 Identities=16% Similarity=0.267 Sum_probs=122.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|..|||||||++++....+. .+.|+.+.+.. .+. ...+.+.+||+||++.+..++..+++.+|++|+
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~--~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEE--EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999876654 35666665543 233 345789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~~ 162 (185)
|+|++++++++.+..++..+.. .....+.|+++++||+|+.+. ...+++.....-. ..+.++++||++|
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~---~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g 163 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLN---EDELRDAVLLVFANKQDLPNA----MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhc---CHhhCCCCEEEEEECCCCCCC----CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 9999999999887666655432 212236799999999999754 2233333332211 1134668999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
+|+.++++||.+.+.++
T Consensus 164 ~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 164 EGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999988764
No 97
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.97 E-value=1.2e-29 Score=173.16 Aligned_cols=169 Identities=29% Similarity=0.509 Sum_probs=135.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
.||+|+|+.|+|||||++++....+.+.+.++....+ ...+.+++....+.+||++|+..+......+++.+|++++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~ 80 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF 80 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence 5899999999999999999998777766666654443 345566777788999999998887776667788999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC--------ceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN--------SRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
|++++++++.+. .|...+.... ++.|+++|+||+|+.... .+....++...++...+..+++++||
T Consensus 81 ~i~~~~s~~~~~~~~~~~i~~~~-----~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 155 (187)
T cd04129 81 AVDTPDSLENVRTKWIEEVRRYC-----PNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSA 155 (187)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccC
Confidence 999999999985 5777776543 258999999999985421 23344567777777777568999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 160 KEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
++|.|++++|+++.+.+..-++.+
T Consensus 156 ~~~~~v~~~f~~l~~~~~~~~~~~ 179 (187)
T cd04129 156 LTGEGVDDVFEAATRAALLVRKSE 179 (187)
T ss_pred CCCCCHHHHHHHHHHHHhcccCcc
Confidence 999999999999999888766543
No 98
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=6.5e-31 Score=176.41 Aligned_cols=156 Identities=16% Similarity=0.285 Sum_probs=119.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||||++++....+. .+.++.+.+.. .... ..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~--~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999876654 34566665543 2222 45789999999999998888899999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (185)
|+|++++.+++.+..++..+.... ...+.|+++|+||+|+.+. ...+++..+... ...++++++||++|
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDR---EMRDALLLVFANKQDLPDA----MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCH---hhcCCcEEEEEECcCCccC----CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 999999999988877666554321 1236799999999998753 234455554321 11247899999999
Q ss_pred CCHHHHHHHHHH
Q 029929 163 FNVEAAFECIAK 174 (185)
Q Consensus 163 ~~i~~~~~~i~~ 174 (185)
.|++++++||.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999964
No 99
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.97 E-value=1.4e-30 Score=175.97 Aligned_cols=159 Identities=18% Similarity=0.280 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||||++++....+. .+.||.+.+... +.. ..+.+.+||+||+..+...+..+++.+|++|+
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVET--VTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 3589999999999999999999866654 456666655432 333 34789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (185)
|+|++++++++....++..+.... ...+.|+++|+||+|+.+.. ..+++...... ...+.++++||++|
T Consensus 87 v~D~t~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 87 VVDSNDRDRIDEAREELHRMLNED---ELRDAVILVFANKQDLPDAM----KAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred EEECCCHHHHHHHHHHHHHHhhCH---hhcCCcEEEEEeCcCcccCC----CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 999999999998877777664321 12367999999999997531 22222222211 11245778999999
Q ss_pred CCHHHHHHHHHHHHh
Q 029929 163 FNVEAAFECIAKNAL 177 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~ 177 (185)
.|++++++||.+.+.
T Consensus 160 ~gv~e~~~~l~~~~~ 174 (175)
T smart00177 160 DGLYEGLTWLSNNLK 174 (175)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999987753
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.97 E-value=1.8e-30 Score=172.89 Aligned_cols=154 Identities=17% Similarity=0.312 Sum_probs=115.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|||||||++++....+. .+.|+.+.... .+.+ ..+.+.+||+||++.+...+..+++.+|++|+|+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999877665 35666665543 2233 3578999999999999989999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFN 164 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~ 164 (185)
|++++++++.+..++..+.... ...+.|+++++||+|+.+.. ..+++...... ...+.++++||++|+|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~g 148 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNED---ELRDAVLLVFANKQDLPNAM----SAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcH---HhcCCCEEEEEECCCCCCCC----CHHHHHHHhCccccCCCCEEEEEeeCCCCCC
Confidence 9999999998877666654321 11257999999999996531 12222221110 1124578999999999
Q ss_pred HHHHHHHHHH
Q 029929 165 VEAAFECIAK 174 (185)
Q Consensus 165 i~~~~~~i~~ 174 (185)
++++++||.+
T Consensus 149 v~~~~~~l~~ 158 (159)
T cd04150 149 LYEGLDWLSN 158 (159)
T ss_pred HHHHHHHHhc
Confidence 9999999864
No 101
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.97 E-value=2.2e-29 Score=169.53 Aligned_cols=160 Identities=28% Similarity=0.542 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|++|||||||+++|++..+...+.++.... ........+..+.+.+||+||+..+......+++.+|++++|+
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDN-YSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999999999999998866666665433 3445566778889999999999988877888889999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce---------eecHHHHHHHHHhcCCCcEEEee
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR---------VVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
|+++++++.... .|+..+..... +.|+++|+||+|+...... ....++...+....+..+++++|
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 154 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCP-----NVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECS 154 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCC-----CCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEee
Confidence 999999988764 46655544322 6799999999999765322 33466777777777745999999
Q ss_pred eccCCCHHHHHHHHHH
Q 029929 159 AKEGFNVEAAFECIAK 174 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~ 174 (185)
|++|.|+++++++|++
T Consensus 155 a~~~~gi~~l~~~i~~ 170 (171)
T cd00157 155 ALTQEGVKEVFEEAIR 170 (171)
T ss_pred cCCCCCHHHHHHHHhh
Confidence 9999999999999875
No 102
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=3.8e-30 Score=174.72 Aligned_cols=161 Identities=17% Similarity=0.299 Sum_probs=120.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|++|+|||||++++....+.. +.||.+..+. .+.. ..+.+.+||+||++.++..+..+++.+|++|+
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 35899999999999999999998776653 4566665543 2333 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (185)
|+|++++++++....++..+... ....+.|+++|+||.|+.... ..+++...... ...+.++++||++|
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~---~~~~~~piilv~NK~Dl~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSE---DELRDAVLLVFANKQDLPNAM----STTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhC---HhhcCCCEEEEEeCCCCCCCC----CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 99999999998877666555322 112357999999999986531 22222222111 11235678999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
.|++++++||.+.+.++
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887764
No 103
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=2.5e-29 Score=168.55 Aligned_cols=163 Identities=24% Similarity=0.350 Sum_probs=122.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||++++....+...+ +...... .....+.+..+.+.+|||||+..+...+..++..+|++++|+
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENV-PRVLPEI-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccC-CCcccce-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 48999999999999999999998876543 2222222 333445667789999999998877777777789999999999
Q ss_pred ECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCCHH
Q 029929 89 DVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVE 166 (185)
Q Consensus 89 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~ 166 (185)
|++++++++.+. .|...+.... .+.|+++|+||+|+.+........+.+..+...... .+++++||+++.|++
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~-----~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 153 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLG-----VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVS 153 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHH
Confidence 999999999975 5666665432 167999999999997653211122333333333332 379999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
++++.+.+.+.+
T Consensus 154 ~lf~~~~~~~~~ 165 (166)
T cd01893 154 EVFYYAQKAVLH 165 (166)
T ss_pred HHHHHHHHHhcC
Confidence 999999988765
No 104
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.97 E-value=4.2e-30 Score=173.42 Aligned_cols=157 Identities=20% Similarity=0.358 Sum_probs=120.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+. ...++.+.. ...+.++ .+.+.+||+||++.++..+..+++.+|+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i 86 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGFQ--IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALI 86 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45689999999999999999999987543 445555533 3334444 478899999999988888888999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++.+++....++..+.... ...+.|+++|+||+|+.+.. ..+++...... ...++++++||++
T Consensus 87 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04154 87 WVVDSSDRLRLDDCKRELKELLQEE---RLAGATLLILANKQDLPGAL----SEEEIREALELDKISSHHWRIQPCSAVT 159 (173)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcccccCC----CHHHHHHHhCccccCCCceEEEeccCCC
Confidence 9999999999988877777665321 22378999999999997532 33444444321 2246899999999
Q ss_pred CCCHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAK 174 (185)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (185)
|.|++++++++..
T Consensus 160 g~gi~~l~~~l~~ 172 (173)
T cd04154 160 GEGLLQGIDWLVD 172 (173)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999864
No 105
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.97 E-value=6.1e-30 Score=170.82 Aligned_cols=156 Identities=17% Similarity=0.280 Sum_probs=116.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+|+++|.+|||||||++++.+... ...+.++.+..... +. ...+.+.+|||||+..+...+..+++.+|++|+|+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVES--FE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEE--EE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 589999999999999999998753 44556666644322 22 34578899999999999999999999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFN 164 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~ 164 (185)
|++++.++..+..++..+..... ....++|+++|+||+|+.... ..++...... ....++++++||++|.|
T Consensus 77 D~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~g 151 (162)
T cd04157 77 DSSDRLRLVVVKDELELLLNHPD-IKHRRVPILFFANKMDLPDAL----TAVKITQLLGLENIKDKPWHIFASNALTGEG 151 (162)
T ss_pred eCCcHHHHHHHHHHHHHHHcCcc-cccCCCCEEEEEeCccccCCC----CHHHHHHHhCCccccCceEEEEEeeCCCCCc
Confidence 99999988887777776654311 112378999999999997532 1222222211 11124689999999999
Q ss_pred HHHHHHHHHH
Q 029929 165 VEAAFECIAK 174 (185)
Q Consensus 165 i~~~~~~i~~ 174 (185)
++++++||.+
T Consensus 152 v~~~~~~l~~ 161 (162)
T cd04157 152 LDEGVQWLQA 161 (162)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 106
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=2.3e-28 Score=170.30 Aligned_cols=166 Identities=29% Similarity=0.600 Sum_probs=139.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....+||+++|++|||||||++++....+...+.++.+.++....+..++..+.+.+||++|+..+...+..++..++++
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~ 85 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCA 85 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEE
Confidence 34569999999999999999998888888888888888888777777788889999999999998888888889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|+++..++..+..|+..+.... .+.|+++++||+|+... ....+. ..+....+ +.++++|+++|.|
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~~i~lv~nK~Dl~~~---~~~~~~-~~~~~~~~-~~~~e~Sa~~~~~ 155 (215)
T PTZ00132 86 IIMFDVTSRITYKNVPNWHRDIVRVC-----ENIPIVLVGNKVDVKDR---QVKARQ-ITFHRKKN-LQYYDISAKSNYN 155 (215)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECccCccc---cCCHHH-HHHHHHcC-CEEEEEeCCCCCC
Confidence 99999999999999999988887553 26799999999998642 222222 34445444 7899999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+++.+.+|++.+..+.
T Consensus 156 v~~~f~~ia~~l~~~p 171 (215)
T PTZ00132 156 FEKPFLWLARRLTNDP 171 (215)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999999988654
No 107
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=6.7e-30 Score=170.90 Aligned_cols=155 Identities=18% Similarity=0.246 Sum_probs=120.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|++|+|||||++++.+..+...+.|+.+... ..++...+.+.+||+||+..++..+..+++.+|++++|+|
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 76 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVD 76 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEE
Confidence 479999999999999999998877777777776543 2344556889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec--HHHHHHHHHhcCCCcEEEeeecc------
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS--EKKAKAWCASKGNIPYFETSAKE------ 161 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~------ 161 (185)
++++.++.....|+..+.... +++|+++|+||+|+......... ...+..++...+ ++++++||++
T Consensus 77 ~t~~~s~~~~~~~l~~~~~~~-----~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~Sa~~~~s~~~ 150 (164)
T cd04162 77 SADSERLPLARQELHQLLQHP-----PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRR-WILQGTSLDDDGSPSR 150 (164)
T ss_pred CCCHHHHHHHHHHHHHHHhCC-----CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCc-eEEEEeeecCCCChhH
Confidence 999999988887777664321 37899999999999754211100 012233333333 7889999988
Q ss_pred CCCHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAK 174 (185)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (185)
++|++++|+.++.
T Consensus 151 ~~~v~~~~~~~~~ 163 (164)
T cd04162 151 MEAVKDLLSQLIN 163 (164)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998763
No 108
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.8e-29 Score=153.92 Aligned_cols=169 Identities=37% Similarity=0.643 Sum_probs=152.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
+..|+-+++|..|+|||.|+..|...++-..-..+++.++....+.+.+..+++++|||.|++.|+.....+++.+.+.+
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 46799999999999999999999999988888889999999999999999999999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|||++.+.+...+..|+...... -.++.-+++++||.|+... +.+..++.++|+...+ ..|.++|+++|.++
T Consensus 89 mvyditrrstynhlsswl~dar~l----tnpnt~i~lignkadle~q--rdv~yeeak~faeeng-l~fle~saktg~nv 161 (215)
T KOG0097|consen 89 MVYDITRRSTYNHLSSWLTDARNL----TNPNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG-LMFLEASAKTGQNV 161 (215)
T ss_pred EEEEehhhhhhhhHHHHHhhhhcc----CCCceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC-eEEEEecccccCcH
Confidence 999999999999999999877543 3347778899999999876 8899999999999888 89999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++.|-...+.+-.+.+
T Consensus 162 edafle~akkiyqniq 177 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQ 177 (215)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999887777765543
No 109
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.97 E-value=3e-29 Score=169.21 Aligned_cols=159 Identities=30% Similarity=0.508 Sum_probs=123.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|+.||||||+++++...... ...||.+.... .+.+. .+.+.+||.+|+..++..|..++..+|++|
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~--~i~~~--~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIE--EIKYK--GYSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEE--EEEET--TEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccc--eeeeC--cEEEEEEeccccccccccceeeccccceeE
Confidence 56799999999999999999999876533 35566554443 33343 468899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--h---cCCCcEEEeeec
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--S---KGNIPYFETSAK 160 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~s~~ 160 (185)
||+|.++++.+......+..+..... ..++|++|++||+|+.+. ...+++..... . ...+.++.|||.
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~---~~~~piLIl~NK~D~~~~----~~~~~i~~~l~l~~l~~~~~~~v~~~sa~ 159 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPE---LKDIPILILANKQDLPDA----MSEEEIKEYLGLEKLKNKRPWSVFSCSAK 159 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGG---GTTSEEEEEEESTTSTTS----STHHHHHHHTTGGGTTSSSCEEEEEEBTT
T ss_pred EEEecccceeecccccchhhhcchhh---cccceEEEEeccccccCc----chhhHHHhhhhhhhcccCCceEEEeeecc
Confidence 99999999888887766666654322 237899999999998764 23344443322 1 124678999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 029929 161 EGFNVEAAFECIAKNA 176 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (185)
+|+|+.+.++||.+++
T Consensus 160 ~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 160 TGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTBTHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHhcC
Confidence 9999999999999875
No 110
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.97 E-value=9.6e-31 Score=161.17 Aligned_cols=161 Identities=42% Similarity=0.692 Sum_probs=145.3
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEEC
Q 029929 12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDV 90 (185)
Q Consensus 12 ~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~ 90 (185)
+++|..++|||.|+-++...-+. ....++.+.++..+.+..++..+++++|||.||+.|++....|++.+|+++++||+
T Consensus 1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 36899999999999877766554 45678899999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929 91 NVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 170 (185)
.+..||++++.|+.++.++..+ .+.+.+++||+|+.++ +.+..++.+.++..++ +||.++||++|.+++..|-
T Consensus 81 ankasfdn~~~wlsei~ey~k~----~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~-ipfmetsaktg~nvd~af~ 153 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKE----AVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG-IPFMETSAKTGFNVDLAFL 153 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHh----hHhHhhhccccccchh--hccccchHHHHHHHHC-CCceeccccccccHhHHHH
Confidence 9999999999999999988765 5678899999999876 7788889999999998 9999999999999999999
Q ss_pred HHHHHHhhc
Q 029929 171 CIAKNALKN 179 (185)
Q Consensus 171 ~i~~~~~~~ 179 (185)
.|.+.+...
T Consensus 154 ~ia~~l~k~ 162 (192)
T KOG0083|consen 154 AIAEELKKL 162 (192)
T ss_pred HHHHHHHHh
Confidence 999887754
No 111
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.96 E-value=5.3e-29 Score=168.16 Aligned_cols=155 Identities=23% Similarity=0.346 Sum_probs=116.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|++|+|||||++++....+.. +.++.+.+.. .+.++ ...+.+||+||+..+...+..+++.+|++++|
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVE--EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceE--EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5899999999999999999998877654 4566654443 23333 47889999999999988888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCC
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGF 163 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~ 163 (185)
+|+++++++.....++..+... ....+.|+++++||+|+... ...+++..... ....++++++||++|.
T Consensus 90 ~D~s~~~~~~~~~~~l~~~~~~---~~~~~~p~viv~NK~Dl~~~----~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~ 162 (174)
T cd04153 90 IDSTDRERLPLTKEELYKMLAH---EDLRKAVLLVLANKQDLKGA----MTPAEISESLGLTSIRDHTWHIQGCCALTGE 162 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHhc---hhhcCCCEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEecccCCCC
Confidence 9999998887776666655432 22236799999999998753 12222222211 1123579999999999
Q ss_pred CHHHHHHHHHH
Q 029929 164 NVEAAFECIAK 174 (185)
Q Consensus 164 ~i~~~~~~i~~ 174 (185)
|+++++++|.+
T Consensus 163 gi~e~~~~l~~ 173 (174)
T cd04153 163 GLPEGLDWIAS 173 (174)
T ss_pred CHHHHHHHHhc
Confidence 99999999975
No 112
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.96 E-value=3.7e-29 Score=167.88 Aligned_cols=154 Identities=25% Similarity=0.381 Sum_probs=114.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
+|+++|++|+|||||++++...... ..+.++.+... ..+.++ ...+.+||+||+..+...+..+++.+|+
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 5899999999999999999864321 22344444443 233343 4788999999999998888889999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh------cCCCcEEEe
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS------KGNIPYFET 157 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 157 (185)
+++|+|+++++++.....++..+.+.. ...+.|+++++||+|+... ...++...+... ...++++++
T Consensus 77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 77 IIYVIDSTDRERFEESKSALEKVLRNE---ALEGVPLLILANKQDLPDA----LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEEccccccC----CCHHHHHHHhccccccccCCceEEEEe
Confidence 999999999888887777777665432 2237899999999998653 223333333322 123689999
Q ss_pred eeccCCCHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAK 174 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~ 174 (185)
||++|.|++++++||.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999975
No 113
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=166.44 Aligned_cols=165 Identities=35% Similarity=0.565 Sum_probs=149.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||+|..+|....+...+.|+.+ +.+...+.+++..+.+.++||+|+.++..+...++..+|++++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l 80 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL 80 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence 358999999999999999999999999999999997 6678888899999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
||+++++.||+.+..++..+.+.. ....+|+++|+||+|+... +.+..++...++.... ++++++||+.+.+++
T Consensus 81 Vysitd~~SF~~~~~l~~~I~r~~---~~~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~-~~f~E~Sak~~~~v~ 154 (196)
T KOG0395|consen 81 VYSITDRSSFEEAKQLREQILRVK---GRDDVPIILVGNKCDLERE--RQVSEEEGKALARSWG-CAFIETSAKLNYNVD 154 (196)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh---CcCCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC-CcEEEeeccCCcCHH
Confidence 999999999999999999884432 2336899999999999987 8889999999988777 789999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
++|..|.+.+..
T Consensus 155 ~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 155 EVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.96 E-value=5.3e-29 Score=167.08 Aligned_cols=157 Identities=18% Similarity=0.253 Sum_probs=118.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
.|+++|++|||||||++++.+. +...+.++.+... ..+.+ ..+.+.+||+||+..++..+..+++.+|++|+|+|
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~--~~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTP--TKLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceE--EEEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 4799999999999999999976 5556667766543 23333 35788999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH--HHHHHHHhcC-CCcEEEeeeccC----
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASKG-NIPYFETSAKEG---- 162 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~s~~~~---- 162 (185)
++++.+++.+..++..+.... ...+.|+++|+||+|+.+........+ .+..++...+ .+.+++|||++|
T Consensus 76 ~s~~~s~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~ 152 (167)
T cd04161 76 SSDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKK 152 (167)
T ss_pred CCchhHHHHHHHHHHHHHcCc---cccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCc
Confidence 999999998888888776432 223679999999999976421111111 1122222222 357888999998
Q ss_pred --CCHHHHHHHHHH
Q 029929 163 --FNVEAAFECIAK 174 (185)
Q Consensus 163 --~~i~~~~~~i~~ 174 (185)
.|+.+.++||.+
T Consensus 153 ~~~g~~~~~~wl~~ 166 (167)
T cd04161 153 IDPSIVEGLRWLLA 166 (167)
T ss_pred cccCHHHHHHHHhc
Confidence 899999999975
No 115
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.96 E-value=1.3e-28 Score=163.81 Aligned_cols=153 Identities=19% Similarity=0.340 Sum_probs=117.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|.+|||||||++++++... ....++.+.... .+.+. ...+.+||+||+..+...+..+++.+|++++|+|
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~~--~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNVE--TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcceE--EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 689999999999999999998873 334455544332 33333 4688999999999988888889999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCCH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i 165 (185)
+++++++.....++..+..... ..+.|+++++||+|+.... ..++...... ....++++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~---~~~~piiiv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv 148 (158)
T cd00878 76 SSDRERIEEAKEELHKLLNEEE---LKGVPLLIFANKQDLPGAL----SVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEeeccCCcccc----CHHHHHHhhChhhccCCcEEEEEeeCCCCCCH
Confidence 9999999988887777765433 2377999999999997642 2222333222 123468999999999999
Q ss_pred HHHHHHHHH
Q 029929 166 EAAFECIAK 174 (185)
Q Consensus 166 ~~~~~~i~~ 174 (185)
++++++|..
T Consensus 149 ~~~~~~l~~ 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHhh
Confidence 999999875
No 116
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.96 E-value=6.5e-29 Score=165.60 Aligned_cols=154 Identities=22% Similarity=0.351 Sum_probs=115.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|++|||||||++++.+..+.. ..++.+.+.. .+.. ...+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~--~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVE--MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceE--EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999999999999887653 3455554432 2333 245789999999999888888888999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--hc---CCCcEEEeeeccCCC
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK---GNIPYFETSAKEGFN 164 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~s~~~~~~ 164 (185)
++++.++.....++..+.... ...+.|+++|+||+|+.... ..+++..... .. ..++++++||++|+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (160)
T cd04156 77 SSDEARLDESQKELKHILKNE---HIKGVPVVLLANKQDLPGAL----TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEG 149 (160)
T ss_pred CCcHHHHHHHHHHHHHHHhch---hhcCCCEEEEEECcccccCc----CHHHHHHHcCCcccCCCCcEEEEecccccCCC
Confidence 999988888877777665432 12368999999999996431 1222222211 11 225799999999999
Q ss_pred HHHHHHHHHH
Q 029929 165 VEAAFECIAK 174 (185)
Q Consensus 165 i~~~~~~i~~ 174 (185)
+++++++|.+
T Consensus 150 v~~~~~~i~~ 159 (160)
T cd04156 150 LAEAFRKLAS 159 (160)
T ss_pred hHHHHHHHhc
Confidence 9999999864
No 117
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.96 E-value=6.2e-29 Score=165.40 Aligned_cols=153 Identities=21% Similarity=0.350 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
||+++|++++|||||++++....+.. ..++.+.+.. .+.. ....+.+|||||+..+...+..+++.+|++++|+|
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY--KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999999999998776543 3455544432 2222 34788999999999998888999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCCH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFNV 165 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~i 165 (185)
++++.++.....++..+.+. ....+.|+++|+||+|+.... ....+...... ....+++++||++|.|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~---~~~~~~piiiv~nK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 148 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEE---EELKGAVLLVFANKQDMPGAL----SEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhc---hhhcCCcEEEEEeCCCCCCCC----CHHHHHHHhCccccCCCcEEEEEeeccCCCCH
Confidence 99988777655554443322 122367999999999997542 11222211110 11246999999999999
Q ss_pred HHHHHHHHH
Q 029929 166 EAAFECIAK 174 (185)
Q Consensus 166 ~~~~~~i~~ 174 (185)
++++++|.+
T Consensus 149 ~~l~~~l~~ 157 (158)
T cd04151 149 DEGMDWLVN 157 (158)
T ss_pred HHHHHHHhc
Confidence 999999975
No 118
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.96 E-value=3.7e-28 Score=154.56 Aligned_cols=167 Identities=22% Similarity=0.351 Sum_probs=131.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+.+.++|+++|..||||||++++|.+.+ .+...|+.+.......+ ..+.+++||.+||..++..|..|+...|++
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~-~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdgl 87 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGED-TDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGL 87 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCC-ccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeE
Confidence 4568999999999999999999999887 44556777665554443 457999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee-ec-HHHHHHHHHhcCCCcEEEeeeccC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV-VS-EKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
|+|+|.+++..++.....++.+.. .....+.|+++++||.|+...-... +. .-.+..++...+ ++++.||+.+|
T Consensus 88 IwvvDssD~~r~~e~~~~L~~lL~---eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~-~~l~~cs~~tg 163 (185)
T KOG0073|consen 88 IWVVDSSDRMRMQECKQELTELLV---EERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHH-WRLVKCSAVTG 163 (185)
T ss_pred EEEEECchHHHHHHHHHHHHHHHh---hhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccC-ceEEEEecccc
Confidence 999999999888887666665544 3333367999999999998541111 11 122334444444 89999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 029929 163 FNVEAAFECIAKNALKNE 180 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (185)
+++.+.++||...+..+.
T Consensus 164 e~l~~gidWL~~~l~~r~ 181 (185)
T KOG0073|consen 164 EDLLEGIDWLCDDLMSRL 181 (185)
T ss_pred ccHHHHHHHHHHHHHHHh
Confidence 999999999999887754
No 119
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=6.2e-28 Score=164.23 Aligned_cols=157 Identities=18% Similarity=0.282 Sum_probs=117.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|||||||++++.+..+.. +.++.+... ..+.+. .+.+.+||+||+..++..+..++..+|++++
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~ 90 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVY 90 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 45899999999999999999999876542 334443322 223333 4788999999999888889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----------cCCCcEE
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPYF 155 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ 155 (185)
|+|+++++++.....++..+.+.. ...+.|+++|+||+|+... ...+++.....- .....++
T Consensus 91 vvD~~~~~~~~~~~~~l~~l~~~~---~~~~~piliv~NK~Dl~~~----~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 91 LVDAYDKERFAESKRELDALLSDE---ELATVPFLILGNKIDAPYA----ASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCh---hhcCCCEEEEEeCccccCC----CCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999988888776666654321 1236799999999998643 334444433311 1235699
Q ss_pred EeeeccCCCHHHHHHHHHHH
Q 029929 156 ETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~ 175 (185)
+|||+++.|++++++||.++
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999865
No 120
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.5e-27 Score=163.55 Aligned_cols=152 Identities=25% Similarity=0.408 Sum_probs=122.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-----CcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-----DRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
+||+++|..|+|||||++++.+..+...+.+|.+.++....+.+. +..+.+.+||++|++.+..+...+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999888888888877776666664 467899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCC---------------CCCCCCcEEEEEeCCCCCCCCceeecHH----HHHH
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASP---------------SDPENFPFVVLGNKTDVDGGNSRVVSEK----KAKA 144 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~----~~~~ 144 (185)
+|+|||++++++++.+..|+..+...... ....++|+++|+||+|+.+. +....+ ....
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~--r~~~~~~~~~~~~~ 158 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE--KESSGNLVLTARGF 158 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh--cccchHHHhhHhhh
Confidence 99999999999999999999998764311 12347899999999999764 333333 2334
Q ss_pred HHHhcCCCcEEEeeeccCC
Q 029929 145 WCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 145 ~~~~~~~~~~~~~s~~~~~ 163 (185)
++...+ ++.+..++.++.
T Consensus 159 ia~~~~-~~~i~~~c~~~~ 176 (202)
T cd04102 159 VAEQGN-AEEINLNCTNGR 176 (202)
T ss_pred HHHhcC-CceEEEecCCcc
Confidence 455555 888888888543
No 121
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-29 Score=160.93 Aligned_cols=169 Identities=45% Similarity=0.703 Sum_probs=149.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC---------CcEEEEEEecCCChhhhcccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE---------DRLFTLQIWDTAGQERFQSLGVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~ 76 (185)
.+.++.+.+|..|+||||++.+.+..++......+.+.++..+.+-+. +..+.+++|||+|++.|+++...
T Consensus 7 dylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 7 DYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 345788999999999999999999999999999999998887776653 23467899999999999999999
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+++.+=++++++|.++..+|-++..|+.++.-++.-. +.-+++++||+||.+. +.+...+...++..++ +|+++
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE---~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-lPYfE 160 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCE---NPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-LPYFE 160 (219)
T ss_pred HHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccC---CCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-CCeee
Confidence 9999999999999999999999999999998765432 4358999999999877 8888999999999998 99999
Q ss_pred eeeccCCCHHHHHHHHHHHHhhcC
Q 029929 157 TSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+||-+|.++++.++.+...+..+.
T Consensus 161 TSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 161 TSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred eccccCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999988887653
No 122
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.96 E-value=7.7e-28 Score=164.72 Aligned_cols=157 Identities=23% Similarity=0.358 Sum_probs=119.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
+.++|+++|++|||||||++++.+..+. .+.++.+.. ...+.++ ...+.+||+||+..+...+..+++.+|++++
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~--~~~i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil 92 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF 92 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcc--eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 4589999999999999999999987754 344554433 2334444 3678899999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc---------------CC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------GN 151 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------~~ 151 (185)
|+|++++++++....++..+.... ...+.|+++++||+|+... ...+++....... ..
T Consensus 93 V~D~~~~~s~~~~~~~~~~i~~~~---~~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 93 LVDAADPERFQESKEELDSLLSDE---ELANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEECCcHHHHHHHHHHHHHHHcCc---cccCCCEEEEEeCCCCCCC----cCHHHHHHHhCcccccccccccccccCcee
Confidence 999999988887777777665432 2236799999999998642 3345555544321 12
Q ss_pred CcEEEeeeccCCCHHHHHHHHHHH
Q 029929 152 IPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 152 ~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+++++|||++|+|+.++++||.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 468999999999999999999875
No 123
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.96 E-value=2.3e-28 Score=163.12 Aligned_cols=168 Identities=28% Similarity=0.496 Sum_probs=149.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
..++++|+|..++|||+|+..+..+.++..+.||.. +-+...+.++ +..+.+.+|||.||+++..++...+.++|+++
T Consensus 3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 458999999999999999999999999999999997 5556667785 89999999999999999998888999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+||+++++++++++ .+|+.++..+++ +.|+|+|++|.||.... ...+..++...++...+...+
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp-----~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCP-----NVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCC-----CCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 99999999999997 679999988773 78999999999998432 235678889999999998999
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
++|||++..|++++|+..+..+....
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999999999887653
No 124
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.96 E-value=1.8e-27 Score=158.02 Aligned_cols=154 Identities=27% Similarity=0.447 Sum_probs=117.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
.|+++|++|||||||++++.+..+...+.++.+..... .... .+.+.+||+||+..+...+..++..+|++++|+|
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d 76 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTKG--NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVD 76 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEE
Confidence 37899999999999999999998887777777665543 2333 3789999999999999889999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeeccCCCH
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~i 165 (185)
+++++++.....++..+... ....+.|+++|+||+|+.+... ......... ....++++++|+++|.|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 149 (159)
T cd04159 77 AADRTALEAAKNELHDLLEK---PSLEGIPLLVLGNKNDLPGALS----VDELIEQMNLKSITDREVSCYSISCKEKTNI 149 (159)
T ss_pred CCCHHHHHHHHHHHHHHHcC---hhhcCCCEEEEEeCccccCCcC----HHHHHHHhCcccccCCceEEEEEEeccCCCh
Confidence 99988888776666665432 1223679999999999875421 111111111 112367899999999999
Q ss_pred HHHHHHHHH
Q 029929 166 EAAFECIAK 174 (185)
Q Consensus 166 ~~~~~~i~~ 174 (185)
++++++|.+
T Consensus 150 ~~l~~~l~~ 158 (159)
T cd04159 150 DIVLDWLIK 158 (159)
T ss_pred HHHHHHHhh
Confidence 999999975
No 125
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.95 E-value=1.1e-26 Score=170.00 Aligned_cols=166 Identities=17% Similarity=0.130 Sum_probs=122.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 81 (185)
..|+++|.+|||||||++++++........+.++..+....+.+.+ ...+++||+||..+ ....+...++.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~-~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a 237 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDD-YKSFVIADIPGLIEGASEGAGLGHRFLKHIERT 237 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCC-CcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence 5799999999999999999998765545556666666666666532 34688999999532 111223345679
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
+++++|+|+++.++++.+..|..++..+... ..++|+++|+||+|+.+. .....+....+....+ ++++++||++
T Consensus 238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~--L~~kp~IIV~NKiDL~~~--~~~~~~~~~~~~~~~~-~~i~~iSAkt 312 (335)
T PRK12299 238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPE--LADKPRILVLNKIDLLDE--EEEREKRAALELAALG-GPVFLISAVT 312 (335)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhh--cccCCeEEEEECcccCCc--hhHHHHHHHHHHHhcC-CCEEEEEcCC
Confidence 9999999999888888888888887655321 126799999999999754 2222333444444444 7899999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 029929 162 GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (185)
++|+++++++|.+.+...+
T Consensus 313 g~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 313 GEGLDELLRALWELLEEAR 331 (335)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999887544
No 126
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.95 E-value=6.3e-27 Score=156.47 Aligned_cols=154 Identities=20% Similarity=0.183 Sum_probs=105.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
.|+++|.+|+|||||+++|.+.. +.....++.+.+.....+.+.. ...+.+|||||++.+......+++.+|++++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~ 80 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL 80 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence 68999999999999999999643 2222334444444444444442 4588999999998887766777889999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEEeeecc
Q 029929 87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKE 161 (185)
Q Consensus 87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ 161 (185)
|+|+++ +++.+.+. .+ .... ..|+++++||+|+..........+++.+..... ...+++++||++
T Consensus 81 V~d~~~~~~~~~~~~~~----~~-~~~~-----~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (164)
T cd04171 81 VVAADEGIMPQTREHLE----IL-ELLG-----IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVT 150 (164)
T ss_pred EEECCCCccHhHHHHHH----HH-HHhC-----CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCC
Confidence 999987 33333221 11 1111 238999999999976421122233444444432 347999999999
Q ss_pred CCCHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAK 174 (185)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (185)
++|++++++.+..
T Consensus 151 ~~~v~~l~~~l~~ 163 (164)
T cd04171 151 GEGIEELKEYLDE 163 (164)
T ss_pred CcCHHHHHHHHhh
Confidence 9999999998864
No 127
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=1.2e-26 Score=156.11 Aligned_cols=160 Identities=19% Similarity=0.124 Sum_probs=111.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccch---hccCc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGAD 82 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~d 82 (185)
+|+++|.+|||||||++++.+........+..+.+.....+.+.+ ...+.+|||||... .......+ +..+|
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d 80 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERTR 80 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhCC
Confidence 689999999999999999997654333333333333333333333 24789999999632 11222233 34699
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
++++|+|++++ ++++.+..|...+...... ..+.|+++|+||+|+.... ...+....+.......+++++|+++
T Consensus 81 ~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~--~~~~p~ivv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~Sa~~ 155 (170)
T cd01898 81 LLLHVIDLSGDDDPVEDYKTIRNELELYNPE--LLEKPRIVVLNKIDLLDEE---ELFELLKELLKELWGKPVFPISALT 155 (170)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHHhCcc--ccccccEEEEEchhcCCch---hhHHHHHHHHhhCCCCCEEEEecCC
Confidence 99999999998 7888888888877654321 2267999999999997642 2233344444443347899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAKN 175 (185)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (185)
+.|+++++++|.+.
T Consensus 156 ~~gi~~l~~~i~~~ 169 (170)
T cd01898 156 GEGLDELLRKLAEL 169 (170)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999865
No 128
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.95 E-value=3.3e-27 Score=159.30 Aligned_cols=157 Identities=23% Similarity=0.361 Sum_probs=114.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|||||||++++.+..+. ...++.+... ..+... +..+.+||+||+..+...+..+++.+|+++
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~~-~~~~t~g~~~--~~i~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii 86 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILKQLASEDIS-HITPTQGFNI--KTVQSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLI 86 (173)
T ss_pred CCccEEEEEccCCCCHHHHHHHHhcCCCc-ccCCCCCcce--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence 34689999999999999999999987653 2344444332 233333 367889999999888888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~ 161 (185)
+|+|+++..++.....++..+..... ..++|+++++||+|+.... ..+++....... ..++++++||++
T Consensus 87 ~v~D~~~~~~~~~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~----~~~~i~~~l~~~~~~~~~~~~~~~Sa~~ 159 (173)
T cd04155 87 YVIDSADKKRLEEAGAELVELLEEEK---LAGVPVLVFANKQDLATAA----PAEEIAEALNLHDLRDRTWHIQACSAKT 159 (173)
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhChh---hcCCCEEEEEECCCCccCC----CHHHHHHHcCCcccCCCeEEEEEeECCC
Confidence 99999998888877666665544322 2268999999999987532 122222221111 113578999999
Q ss_pred CCCHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAK 174 (185)
Q Consensus 162 ~~~i~~~~~~i~~ 174 (185)
|+|++++++||.+
T Consensus 160 ~~gi~~~~~~l~~ 172 (173)
T cd04155 160 GEGLQEGMNWVCK 172 (173)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999975
No 129
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=3.8e-26 Score=163.91 Aligned_cols=145 Identities=28% Similarity=0.514 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-------------cEEEEEEecCCChhhhcc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------RLFTLQIWDTAGQERFQS 72 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~g~~~~~~ 72 (185)
...+||+++|..|+|||||++++.+..+...+.+|.+.++....+.+++ ..+.+.+|||+|++.+..
T Consensus 19 ~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrs 98 (334)
T PLN00023 19 CGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKD 98 (334)
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhh
Confidence 3568999999999999999999999988888888998887767666542 467899999999999999
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCC--------CCCCCcEEEEEeCCCCCCCCc-ee---ecHH
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPS--------DPENFPFVVLGNKTDVDGGNS-RV---VSEK 140 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~p~iiv~nK~Dl~~~~~-~~---~~~~ 140 (185)
++..+++.+|++|+|||++++++++.+..|+..+....... ...++|++||+||+||..... +. ...+
T Consensus 99 L~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e 178 (334)
T PLN00023 99 CRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVD 178 (334)
T ss_pred hhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHH
Confidence 99999999999999999999999999999999998764211 113589999999999976422 12 3578
Q ss_pred HHHHHHHhcC
Q 029929 141 KAKAWCASKG 150 (185)
Q Consensus 141 ~~~~~~~~~~ 150 (185)
++++++...+
T Consensus 179 ~a~~~A~~~g 188 (334)
T PLN00023 179 AARQWVEKQG 188 (334)
T ss_pred HHHHHHHHcC
Confidence 8889988765
No 130
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.95 E-value=1.7e-26 Score=155.08 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=105.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc---------ccchhc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---------GVAFYR 79 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---------~~~~~~ 79 (185)
.+|+++|.+|+|||||++++.+..+.....+..+.+....... .....+++|||||+...... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFD--YKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEc--cCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 3799999999999999999998876533333333333333332 23578999999997421110 001112
Q ss_pred cCcEEEEEEECCChhhH--HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 80 GADCCVLVYDVNVMKSF--DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
.+|++++|+|+++..++ +....|+..+.... .+.|+++|+||+|+..... .. ....+... ..++++++
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-----~~~pvilv~NK~Dl~~~~~--~~--~~~~~~~~-~~~~~~~~ 148 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-----KNKPVIVVLNKIDLLTFED--LS--EIEEEEEL-EGEEVLKI 148 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-----CcCCeEEEEEccccCchhh--HH--HHHHhhhh-ccCceEEE
Confidence 36899999999987653 44445666554332 2679999999999975421 11 13333333 34789999
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~ 176 (185)
||++|.|+++++++|.+.+
T Consensus 149 Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 149 STLTEEGVDEVKNKACELL 167 (168)
T ss_pred EecccCCHHHHHHHHHHHh
Confidence 9999999999999999876
No 131
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.95 E-value=2.9e-26 Score=155.47 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=109.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-------CCCccC------cceeeeEEEE--EEE---CCcEEEEEEecCCChhhhc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~-------~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~~~ 71 (185)
+|+++|.+++|||||+++|++... ...+.+ +.+.+..... ..+ ++..+.+.+|||||+..+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 789999999999999999987431 111111 1122222222 222 5667889999999999998
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 150 (185)
..+..+++.+|++|+|+|+++..+......|.... . .++|+++|+||+|+.+.. ......++....+
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~----~~~~iiiv~NK~Dl~~~~----~~~~~~~~~~~~~~ 149 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----E----NNLEIIPVINKIDLPSAD----PERVKQQIEDVLGL 149 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----H----cCCCEEEEEECCCCCcCC----HHHHHHHHHHHhCC
Confidence 88889999999999999999876665554443322 1 267999999999986431 1122223333333
Q ss_pred -CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 151 -NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 151 -~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
..+++++||++|.|+++++++|.+.++
T Consensus 150 ~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 150 DPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred CcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 235899999999999999999998764
No 132
>PTZ00099 rab6; Provisional
Probab=99.95 E-value=1.3e-25 Score=151.25 Aligned_cols=142 Identities=35% Similarity=0.593 Sum_probs=122.5
Q ss_pred CCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcC
Q 029929 32 KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQAS 111 (185)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~ 111 (185)
.+.+.+.+|.+.++....+.+++..+.+.+|||+|++.+...+..+++.+|++|+|||++++++++.+..|+..+.....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~ 83 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERG 83 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcC
Confidence 45667889999899888888889899999999999999999999999999999999999999999999999888865432
Q ss_pred CCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 112 PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 112 ~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.+.|+++|+||+|+... +.+..++...++...+ +.++++||++|.|++++|++|++.+++..
T Consensus 84 ----~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~~-~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 84 ----KDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEYN-TMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ----CCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC-CEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 36799999999999754 4456777777777665 78999999999999999999999997643
No 133
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.95 E-value=5.1e-26 Score=157.38 Aligned_cols=156 Identities=20% Similarity=0.208 Sum_probs=109.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~ 76 (185)
...++|+++|++|||||||++++++........+..+.+.....+.+.+. ..+.+|||||... +... ..
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~-~~ 116 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRST-LE 116 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHH-HH
Confidence 44589999999999999999999988754333334444444444444443 3788999999622 1111 12
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
.+..+|++++|+|++++.++.....|...+.... ..+.|+++|+||+|+....... ..... ...++++
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~----~~~~~viiV~NK~Dl~~~~~~~-------~~~~~-~~~~~~~ 184 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELG----AEDIPMILVLNKIDLLDDEELE-------ERLEA-GRPDAVF 184 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC----cCCCCEEEEEEccccCChHHHH-------HHhhc-CCCceEE
Confidence 3568999999999999888877666665554332 1257999999999997642111 22232 3478999
Q ss_pred eeeccCCCHHHHHHHHHHH
Q 029929 157 TSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~ 175 (185)
+||+++.|+++++++|.+.
T Consensus 185 ~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 185 ISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred EEcCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 134
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.95 E-value=1.9e-25 Score=148.11 Aligned_cols=157 Identities=25% Similarity=0.545 Sum_probs=125.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
+||+++|.+|+|||||++++........+.++.+.+.....+..++..+.+.+||+||+..+...+..+.+.++.++.++
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~ 81 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF 81 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence 79999999999999999999998877777778888777776777776688999999999888888888888999999999
Q ss_pred ECCCh-hhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 89 DVNVM-KSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 89 d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|.... .++.... .+...+...... +.|+++++||+|+.... ............+..+++++||.++.|+.
T Consensus 82 d~~~~v~~~~~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~~~----~~~~~~~~~~~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 82 DIVILVLDVEEILEKQTKEIIHHAES----NVPIILVGNKIDLRDAK----LKTHVAFLFAKLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEeeeehhhhhHhHHHHHHHHHhccc----CCcEEEEEEcccCCcch----hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence 99876 6665554 566655554432 67999999999997642 23333444444555789999999999999
Q ss_pred HHHHHHH
Q 029929 167 AAFECIA 173 (185)
Q Consensus 167 ~~~~~i~ 173 (185)
+++++|.
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9999874
No 135
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.94 E-value=2.1e-26 Score=150.16 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=105.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh------cccccchh--cc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------QSLGVAFY--RG 80 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------~~~~~~~~--~~ 80 (185)
++|+++|.||+|||||+|+|++........|+.+.+.....+.+.+ ..+.++|+||.... ......++ .+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~ 78 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSEK 78 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence 5899999999999999999999997767778888888777777766 57788899993222 12223333 68
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
.|++++|+|+++.+.- ..+..++.+. ++|+++++||+|...........+. +...++ +|++++||.
T Consensus 79 ~D~ii~VvDa~~l~r~---l~l~~ql~e~-------g~P~vvvlN~~D~a~~~g~~id~~~---Ls~~Lg-~pvi~~sa~ 144 (156)
T PF02421_consen 79 PDLIIVVVDATNLERN---LYLTLQLLEL-------GIPVVVVLNKMDEAERKGIEIDAEK---LSERLG-VPVIPVSAR 144 (156)
T ss_dssp SSEEEEEEEGGGHHHH---HHHHHHHHHT-------TSSEEEEEETHHHHHHTTEEE-HHH---HHHHHT-S-EEEEBTT
T ss_pred CCEEEEECCCCCHHHH---HHHHHHHHHc-------CCCEEEEEeCHHHHHHcCCEECHHH---HHHHhC-CCEEEEEeC
Confidence 9999999999974322 2333334322 6899999999999876555554444 444455 899999999
Q ss_pred cCCCHHHHHHHH
Q 029929 161 EGFNVEAAFECI 172 (185)
Q Consensus 161 ~~~~i~~~~~~i 172 (185)
+++|++++++.|
T Consensus 145 ~~~g~~~L~~~I 156 (156)
T PF02421_consen 145 TGEGIDELKDAI 156 (156)
T ss_dssp TTBTHHHHHHHH
T ss_pred CCcCHHHHHhhC
Confidence 999999999875
No 136
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.7e-26 Score=148.52 Aligned_cols=162 Identities=20% Similarity=0.330 Sum_probs=128.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
....+|+++|..+|||||++++|........ .||.+.......+. +..+++||.+|+..++..|..|++..+++|
T Consensus 15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~yk----n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI 89 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEYK----NISFTVWDVGGQEKLRPLWKHYFQNTQGLI 89 (181)
T ss_pred cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEEc----ceEEEEEecCCCcccccchhhhccCCcEEE
Confidence 3568999999999999999999987775544 78888776666553 689999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~ 161 (185)
||+|.++++.+..+...+..+.. .....+.|+++++||.|+++.- ...++..... ....+.+..|+|.+
T Consensus 90 fVvDS~Dr~Ri~eak~eL~~~l~---~~~l~~~~llv~aNKqD~~~al----s~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 90 FVVDSSDRERIEEAKEELHRMLA---EPELRNAPLLVFANKQDLPGAL----SAAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred EEEeCCcHHHHHHHHHHHHHHHc---CcccCCceEEEEechhhccccC----CHHHHHhHhhhhccCCCCcEEeeccccc
Confidence 99999999998887665555543 3334588999999999998652 2222222221 11347889999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 029929 162 GFNVEAAFECIAKNALKN 179 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (185)
|+|+.+.++|+.+.+...
T Consensus 163 G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 999999999999988754
No 137
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.94 E-value=7.3e-26 Score=148.03 Aligned_cols=135 Identities=24% Similarity=0.317 Sum_probs=97.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh-----hhcccccchhccCcEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQSLGVAFYRGADCC 84 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~d~~ 84 (185)
||+++|.+|+|||||++++.+.... +.++.+.+ +. -.+|||||+. .+.... ..++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~-------~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVE-------YN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--cccceeEE-------Ec-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence 7999999999999999999977642 22222211 11 1589999972 233332 347899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++.++.. ..|.... ..|+++|+||+|+.+. ....+....++...+..+++++||++|.|
T Consensus 67 ilv~d~~~~~s~~~-~~~~~~~----------~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 132 (142)
T TIGR02528 67 ALVQSATDPESRFP-PGFASIF----------VKPVIGLVTKIDLAEA---DVDIERAKELLETAGAEPIFEISSVDEQG 132 (142)
T ss_pred EEEecCCCCCcCCC-hhHHHhc----------cCCeEEEEEeeccCCc---ccCHHHHHHHHHHcCCCcEEEEecCCCCC
Confidence 99999999888754 2332211 2399999999998752 23455566666666545899999999999
Q ss_pred HHHHHHHHH
Q 029929 165 VEAAFECIA 173 (185)
Q Consensus 165 i~~~~~~i~ 173 (185)
+++++++|.
T Consensus 133 i~~l~~~l~ 141 (142)
T TIGR02528 133 LEALVDYLN 141 (142)
T ss_pred HHHHHHHHh
Confidence 999999874
No 138
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.94 E-value=2.6e-25 Score=159.65 Aligned_cols=158 Identities=20% Similarity=0.089 Sum_probs=108.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchhcc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYRG 80 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~~ 80 (185)
+|+++|.+|+|||||+|+|++.+... ...+.++......... .+ ..++.+|||||..... .....++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~-~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHT-TG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEE-cC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 68999999999999999999987542 2333333333222222 22 3578999999954321 112345689
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++++|+|+++..+.+ ..+...+.. .+.|+++|+||+|+... .........+....+..+++++||+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~-------~~~p~ilV~NK~Dl~~~---~~~~~~~~~~~~~~~~~~v~~iSA~ 147 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN-------LKRPVVLTRNKLDNKFK---DKLLPLIDKYAILEDFKDIVPISAL 147 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh-------cCCCEEEEEECeeCCCH---HHHHHHHHHHHhhcCCCceEEEecC
Confidence 99999999999876654 233333321 16799999999999742 2223334444444443489999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCC
Q 029929 161 EGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~ 181 (185)
+|.|+++++++|.+.+++..+
T Consensus 148 ~g~gi~~L~~~l~~~l~~~~~ 168 (270)
T TIGR00436 148 TGDNTSFLAAFIEVHLPEGPF 168 (270)
T ss_pred CCCCHHHHHHHHHHhCCCCCC
Confidence 999999999999999887664
No 139
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.94 E-value=3.1e-25 Score=148.86 Aligned_cols=159 Identities=22% Similarity=0.213 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
.|+++|.+|+|||||+++|....+.....++.+.+.....+... .....+.+|||||+..+...+..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999887766544455444443444433 13568899999999888888888889999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH-----hcCCCcEEEeeeccCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-----SKGNIPYFETSAKEGF 163 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~ 163 (185)
|+++........ .+..+.. .++|+++|+||+|+...... ........+.. ....++++++|+++|.
T Consensus 82 d~~~~~~~~~~~-~~~~~~~-------~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 152 (168)
T cd01887 82 AADDGVMPQTIE-AIKLAKA-------ANVPFIVALNKIDKPNANPE-RVKNELSELGLQGEDEWGGDVQIVPTSAKTGE 152 (168)
T ss_pred ECCCCccHHHHH-HHHHHHH-------cCCCEEEEEEceecccccHH-HHHHHHHHhhccccccccCcCcEEEeecccCC
Confidence 998743222211 1122211 26799999999998753211 11111211111 1123689999999999
Q ss_pred CHHHHHHHHHHHHh
Q 029929 164 NVEAAFECIAKNAL 177 (185)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (185)
|+.+++++|.+...
T Consensus 153 gi~~l~~~l~~~~~ 166 (168)
T cd01887 153 GIDDLLEAILLLAE 166 (168)
T ss_pred CHHHHHHHHHHhhh
Confidence 99999999987653
No 140
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.94 E-value=2.1e-25 Score=152.88 Aligned_cols=163 Identities=18% Similarity=0.094 Sum_probs=106.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC----C---CCCccCcceeeeEEEEEEEC------------CcEEEEEEecCCChhh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK----F---SNQYKATIGADFLTKEVQFE------------DRLFTLQIWDTAGQER 69 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~----~---~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~D~~g~~~ 69 (185)
++|+++|++|+|||||+++++... + .....++.+.+.......+. +..+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 589999999999999999998731 1 11122233333333333332 3357899999999876
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS- 148 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~- 148 (185)
+........+.+|++++|+|+.+.........+. +... . +.|+++++||+|+......+...+++.+....
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~ 152 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---L---CKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---c---CCCEEEEEECcccCCHHHHHHHHHHHHHHHHHH
Confidence 6555445567789999999998744333222111 1111 1 56999999999997543222223333332111
Q ss_pred -----cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 149 -----KGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 149 -----~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
...++++++||++|.|+++++++|...++..
T Consensus 153 ~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred HHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 2347899999999999999999999988753
No 141
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.94 E-value=6.9e-25 Score=160.47 Aligned_cols=161 Identities=18% Similarity=0.134 Sum_probs=116.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----ccccc---hhccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----SLGVA---FYRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~~~---~~~~~ 81 (185)
..|+++|.+|||||||+++++.........+.++..+....+.+.+ ...+++||+||..+.. .+... .+..+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhiera 236 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHIERT 236 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHHHhh
Confidence 5899999999999999999998765444445555666666665553 3578999999964221 22223 34569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
|++++|+|+++. ++++.+..|..++...... ..+.|+++|+||+|+.... ...+....+....+ .+++++|
T Consensus 237 d~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~--l~~kp~IIV~NK~DL~~~~---~~~~~~~~l~~~~~-~~vi~iS 310 (329)
T TIGR02729 237 RVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPE--LAEKPRIVVLNKIDLLDEE---ELAELLKELKKALG-KPVFPIS 310 (329)
T ss_pred CEEEEEEcCccccccCHHHHHHHHHHHHHHhhhh--hccCCEEEEEeCccCCChH---HHHHHHHHHHHHcC-CcEEEEE
Confidence 999999999976 6777777777776654321 1267999999999997641 12333444444444 7899999
Q ss_pred eccCCCHHHHHHHHHHHH
Q 029929 159 AKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~ 176 (185)
|++++|+++++++|.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998765
No 142
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.93 E-value=7.2e-25 Score=145.68 Aligned_cols=148 Identities=20% Similarity=0.219 Sum_probs=107.3
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh--ccCcEE
Q 029929 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCC 84 (185)
Q Consensus 13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~ 84 (185)
++|.+|+|||||++++.+........++.+.+.....+.+++ ..+.+|||||+..+... ...++ ..+|++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 579999999999999998875555566666666666666654 57899999998765532 34445 489999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|+++++... .+...+.. .++|+++|+||+|+....... .....+....+ .+++++|+.++.|
T Consensus 79 i~v~d~~~~~~~~---~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~iSa~~~~~ 144 (158)
T cd01879 79 VNVVDATNLERNL---YLTLQLLE-------LGLPVVVALNMIDEAEKRGIK---IDLDKLSELLG-VPVVPTSARKGEG 144 (158)
T ss_pred EEEeeCCcchhHH---HHHHHHHH-------cCCCEEEEEehhhhcccccch---hhHHHHHHhhC-CCeEEEEccCCCC
Confidence 9999999765432 23333321 167999999999997642221 22334444455 7999999999999
Q ss_pred HHHHHHHHHHHH
Q 029929 165 VEAAFECIAKNA 176 (185)
Q Consensus 165 i~~~~~~i~~~~ 176 (185)
+.++++++.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.93 E-value=2.2e-24 Score=141.90 Aligned_cols=155 Identities=48% Similarity=0.792 Sum_probs=117.0
Q ss_pred EEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECC
Q 029929 13 ILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 13 viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~ 91 (185)
++|++|+|||||++++.+... .....++. ................+.+||+||+..........++.+|++++|+|++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 589999999999999998887 44444554 6666677776677889999999998888777788889999999999999
Q ss_pred ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929 92 VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171 (185)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 171 (185)
++.+.+....+....... ....+.|+++++||+|+..... ................+++++|+.++.|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~---~~~~~~~~ivv~nk~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 154 (157)
T cd00882 80 DRESFENVKEWLLLILIN---KEGENIPIILVGNKIDLPEERV--VSEEELAEQLAKELGVPYFETSAKTGENVEELFEE 154 (157)
T ss_pred CHHHHHHHHHHHHHHHHh---hccCCCcEEEEEeccccccccc--hHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHH
Confidence 998888876653222211 1223789999999999976422 11221122233344589999999999999999999
Q ss_pred HH
Q 029929 172 IA 173 (185)
Q Consensus 172 i~ 173 (185)
|.
T Consensus 155 l~ 156 (157)
T cd00882 155 LA 156 (157)
T ss_pred Hh
Confidence 86
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.93 E-value=1.5e-24 Score=149.74 Aligned_cols=159 Identities=20% Similarity=0.224 Sum_probs=103.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------hhhhcccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLG 74 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~ 74 (185)
...++|+++|.+|+|||||++++.+..+.....++.+... ..+.+. .+.+||||| ++.++..+
T Consensus 7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 7 DRKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKP--NHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCc--eEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 4568999999999999999999998876655555554332 223222 588999999 44555544
Q ss_pred cchh----ccCcEEEEEEECCChhhHHHHHHHH--------HHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929 75 VAFY----RGADCCVLVYDVNVMKSFDNLNNWR--------EEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (185)
Q Consensus 75 ~~~~----~~~d~~i~v~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 142 (185)
..++ ..++++++|+|.+...... ..|. ..+...+.. .++|+++|+||+|+.+.. .+..
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~---~~~p~iiv~NK~Dl~~~~-----~~~~ 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRE---LGIPPIVAVNKMDKIKNR-----DEVL 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHH---cCCCeEEEEECccccCcH-----HHHH
Confidence 4444 3467888999986532110 1110 111111111 267999999999997542 2233
Q ss_pred HHHHHhcCC--------CcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 143 KAWCASKGN--------IPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 143 ~~~~~~~~~--------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
.++....+. .+++++||++| |+++++++|.+.+.+...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 151 DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 333333331 25899999999 999999999998876543
No 145
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.93 E-value=7.5e-25 Score=149.64 Aligned_cols=158 Identities=22% Similarity=0.149 Sum_probs=112.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------cceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (185)
+|+++|.+|+|||||++++++......... +.+.......... ....+.+|||||+..+...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW--PDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee--CCEEEEEEeCCCcHHHHHH
Confidence 589999999999999999998776543211 1222222222322 3468899999999888888
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---- 149 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 149 (185)
+..+++.+|++++|+|+.++..... ..++..+.. .+.|+++++||+|+..........+...+.....
T Consensus 79 ~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~-------~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (189)
T cd00881 79 VIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE-------GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFIS 150 (189)
T ss_pred HHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH-------CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccc
Confidence 8888999999999999987654432 223332221 2679999999999986433333344444444332
Q ss_pred ---------CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 150 ---------GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 150 ---------~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
...+++++||++|.|+++++++|.+.++
T Consensus 151 ~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 151 TKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred hhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2478999999999999999999999875
No 146
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.93 E-value=4.5e-27 Score=151.96 Aligned_cols=168 Identities=30% Similarity=0.537 Sum_probs=150.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++++++|..++||||+|+++|..-+...+..+++.++....+.+.+..+...+||++|+++|......|++.+.+.++
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL 98 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL 98 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence 45899999999999999999999999999999999999888888888888888999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
||+.++..+|+....|+..+..-.. .+|.++|-||+|+.+. ......+....+..++ ..++.+|+++..|+.
T Consensus 99 VFSTTDr~SFea~~~w~~kv~~e~~-----~IPtV~vqNKIDlved--s~~~~~evE~lak~l~-~RlyRtSvked~NV~ 170 (246)
T KOG4252|consen 99 VFSTTDRYSFEATLEWYNKVQKETE-----RIPTVFVQNKIDLVED--SQMDKGEVEGLAKKLH-KRLYRTSVKEDFNVM 170 (246)
T ss_pred EEecccHHHHHHHHHHHHHHHHHhc-----cCCeEEeeccchhhHh--hhcchHHHHHHHHHhh-hhhhhhhhhhhhhhH
Confidence 9999999999999999999876554 7899999999999986 4566677777777776 889999999999999
Q ss_pred HHHHHHHHHHhhcCCc
Q 029929 167 AAFECIAKNALKNEPQ 182 (185)
Q Consensus 167 ~~~~~i~~~~~~~~~~ 182 (185)
++|.+|++.+.++.++
T Consensus 171 ~vF~YLaeK~~q~~kq 186 (246)
T KOG4252|consen 171 HVFAYLAEKLTQQKKQ 186 (246)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988766443
No 147
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.93 E-value=5.8e-26 Score=142.12 Aligned_cols=160 Identities=23% Similarity=0.398 Sum_probs=127.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
...+.++|..+||||||.+......+.+...|+.+... .++....+.+.+||.||+..|+.+|..|.+.+++++||
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 36889999999999999999998888888888887544 35556778899999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH-----HhcCCCcEEEeeeccC
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-----ASKGNIPYFETSAKEG 162 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~ 162 (185)
+|+++++..+....-++.++.. ..-.++|+++++||.|+++. .....+.... ... .+..+.+|+++.
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k---~~l~gip~LVLGnK~d~~~A----L~~~~li~rmgL~sitdR-EvcC~siScke~ 167 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDK---PSLTGIPLLVLGNKIDLPGA----LSKIALIERMGLSSITDR-EVCCFSISCKEK 167 (186)
T ss_pred eecCCcccchhhHHHHHHHhcc---hhhcCCcEEEecccccCccc----ccHHHHHHHhCccccccc-eEEEEEEEEcCC
Confidence 9999998888776555555433 33348899999999999875 2222222211 112 267899999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
.+++.+.+||++.....
T Consensus 168 ~Nid~~~~Wli~hsk~~ 184 (186)
T KOG0075|consen 168 VNIDITLDWLIEHSKSL 184 (186)
T ss_pred ccHHHHHHHHHHHhhhh
Confidence 99999999999876543
No 148
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.93 E-value=2e-24 Score=159.40 Aligned_cols=154 Identities=20% Similarity=0.196 Sum_probs=111.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh-h--------hhcccccch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-E--------RFQSLGVAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-~--------~~~~~~~~~ 77 (185)
..++|+++|.+|+|||||+|+|++........++.+.++....+.+.+. ..+.+|||+|. . .+... ...
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~-~~i~l~DT~G~~~~l~~~lie~f~~t-le~ 265 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG-GEVLLTDTVGFIRDLPHELVAAFRAT-LEE 265 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC-ceEEEEecCcccccCCHHHHHHHHHH-HHH
Confidence 4589999999999999999999998755444556666776777776433 47889999996 2 12221 224
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+..+|++++|+|++++.+.+....|...+.... ..+.|+++|+||+|+.... . ...... ...+++++
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~----~~~~piIlV~NK~Dl~~~~--~-----v~~~~~--~~~~~i~i 332 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQIEAVEKVLEELG----AEDIPQLLVYNKIDLLDEP--R-----IERLEE--GYPEAVFV 332 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc----cCCCCEEEEEEeecCCChH--h-----HHHHHh--CCCCEEEE
Confidence 678999999999999888777655554443321 1257999999999997531 1 111111 12468999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~ 175 (185)
||++|.|+++++++|.+.
T Consensus 333 SAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 333 SAKTGEGLDLLLEAIAER 350 (351)
T ss_pred EccCCCCHHHHHHHHHhh
Confidence 999999999999998764
No 149
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.93 E-value=1.7e-24 Score=148.56 Aligned_cols=149 Identities=18% Similarity=0.167 Sum_probs=101.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh--CCCCCCc------------cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN--RKFSNQY------------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (185)
.+|+++|.+++|||||+++|+. ..+.... .++.+.+.......+......+.+|||||+..+...+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 4899999999999999999987 3333221 1223334444444455566789999999999999999
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-----
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----- 149 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 149 (185)
..+++.+|++++|+|+++.. ......++..... .++|+++|+||+|+.... .....+++..+....
T Consensus 83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~-------~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (194)
T cd01891 83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPDAR-PEEVVDEVFDLFIELGATEE 153 (194)
T ss_pred HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH-------cCCCEEEEEECCCCCCCC-HHHHHHHHHHHHHHhCCccc
Confidence 99999999999999998732 2222223332221 167999999999997532 122234444444221
Q ss_pred -CCCcEEEeeeccCCCHH
Q 029929 150 -GNIPYFETSAKEGFNVE 166 (185)
Q Consensus 150 -~~~~~~~~s~~~~~~i~ 166 (185)
..++++++||++|.|+.
T Consensus 154 ~~~~~iv~~Sa~~g~~~~ 171 (194)
T cd01891 154 QLDFPVLYASAKNGWASL 171 (194)
T ss_pred cCccCEEEeehhcccccc
Confidence 13789999999997653
No 150
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=146.55 Aligned_cols=168 Identities=36% Similarity=0.551 Sum_probs=132.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|+.|||||||++++.+..+...+.++.+..+...........+.+.+|||+|+++++..+..++..++++++|
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 38999999999999999999999999988888887777776666665578899999999999999999999999999999
Q ss_pred EECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhc--CCCcE
Q 029929 88 YDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASK--GNIPY 154 (185)
Q Consensus 88 ~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~--~~~~~ 154 (185)
+|..+ ..+.+....|...+..... ...|+++++||+|+..... +.............. ....+
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAP----DDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPAL 160 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCC----CCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccce
Confidence 99999 5555556778888766543 3679999999999987532 112222222222221 12348
Q ss_pred EEeeec--cCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAK--EGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~--~~~~i~~~~~~i~~~~~~~ 179 (185)
+++|++ ++.++.+++..+...+...
T Consensus 161 ~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 161 LETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred eEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 999999 9999999999999888643
No 151
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.2e-23 Score=157.75 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=117.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccch---hccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAF---YRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~---~~~~ 81 (185)
..|+++|.+|||||||++++++........+.++..+....+.+.+ ...+++||+||... ...+...+ +..+
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhier~ 237 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIERT 237 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence 3899999999999999999998775544456666666555555542 35789999999532 11222333 4569
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
+++++|+|+++. +.++....|..++..+... ..++|+++|+||+|+... .+.+..+....+ .+++++|
T Consensus 238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~--L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~-~~i~~iS 308 (424)
T PRK12297 238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPR--LLERPQIVVANKMDLPEA------EENLEEFKEKLG-PKVFPIS 308 (424)
T ss_pred CEEEEEEeCCccccCChHHHHHHHHHHHhhhchh--ccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC-CcEEEEe
Confidence 999999999864 5666666777776654221 226799999999998432 234445555555 7899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcC
Q 029929 159 AKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|+++.|+++++++|.+.+...+
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999887654
No 152
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.92 E-value=4.8e-24 Score=163.69 Aligned_cols=164 Identities=22% Similarity=0.191 Sum_probs=115.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc-
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG- 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~- 74 (185)
..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++. .+.+|||||.. .+....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~--~~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGK--TWRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCE--EEEEEECCCccccccccchHHHHHHHHH
Confidence 4589999999999999999999988653 344566666666666666654 45799999952 222221
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+........+++.........+++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~-------~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 359 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE-------AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPR 359 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCE
Confidence 23568999999999999987776653 3333321 267999999999997532222222233322222334789
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+++||++|.|++++++.+.+.+....
T Consensus 360 ~~~SAk~g~gv~~lf~~i~~~~~~~~ 385 (472)
T PRK03003 360 VNISAKTGRAVDKLVPALETALESWD 385 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998776443
No 153
>PRK15494 era GTPase Era; Provisional
Probab=99.92 E-value=8.3e-24 Score=155.83 Aligned_cols=162 Identities=25% Similarity=0.300 Sum_probs=109.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-ccc-------ccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSL-------GVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~-------~~~ 76 (185)
.+.++|+++|.+|+|||||+++|.+..+.. ...+.++.......+..++ .++.||||||.... ..+ ...
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~ 127 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWS 127 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence 345799999999999999999999887642 2223333344444444443 57899999997432 211 123
Q ss_pred hhccCcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-CCcE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPY 154 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (185)
.+..+|++++|+|..+ ++.... .++..+.. . +.|.++|+||+|+... ...++.+.+.... ...+
T Consensus 128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~---~~p~IlViNKiDl~~~-----~~~~~~~~l~~~~~~~~i 193 (339)
T PRK15494 128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRS----L---NIVPIFLLNKIDIESK-----YLNDIKAFLTENHPDSLL 193 (339)
T ss_pred HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----c---CCCEEEEEEhhcCccc-----cHHHHHHHHHhcCCCcEE
Confidence 4678999999999865 333332 23333321 1 4577899999998642 1334444444332 3689
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
+++||++|.|+++++++|.+.+++..+-+
T Consensus 194 ~~iSAktg~gv~eL~~~L~~~l~~~~~~~ 222 (339)
T PRK15494 194 FPISALSGKNIDGLLEYITSKAKISPWLY 222 (339)
T ss_pred EEEeccCccCHHHHHHHHHHhCCCCCCCC
Confidence 99999999999999999999988776543
No 154
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.3e-23 Score=156.70 Aligned_cols=167 Identities=17% Similarity=0.063 Sum_probs=119.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-------cccccchhccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGVAFYRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~ 81 (185)
-.|.++|.+|||||||+|+|++.+......|.++.......+.+.+ ...++++||||...- .......+..+
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra 238 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLERC 238 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence 3799999999999999999998876555567777666666666543 236889999995421 11222356889
Q ss_pred cEEEEEEECC---ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEe
Q 029929 82 DCCVLVYDVN---VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET 157 (185)
Q Consensus 82 d~~i~v~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (185)
|++++|+|++ ..+.++....+..++...... ..+.|+++|+||+|+.... ...+.+..+....+. .+++++
T Consensus 239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~--L~~kP~IlVlNKiDl~~~~---el~~~l~~l~~~~~~~~~Vi~I 313 (390)
T PRK12298 239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPK--LAEKPRWLVFNKIDLLDEE---EAEERAKAIVEALGWEGPVYLI 313 (390)
T ss_pred CEEEEEeccCcccccChHHHHHHHHHHHHhhhhh--hcCCCEEEEEeCCccCChH---HHHHHHHHHHHHhCCCCCEEEE
Confidence 9999999998 455666666777766554221 1256999999999997531 223334444443332 379999
Q ss_pred eeccCCCHHHHHHHHHHHHhhcCC
Q 029929 158 SAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
||+++.|+++++++|.+.+....+
T Consensus 314 SA~tg~GIdeLl~~I~~~L~~~~~ 337 (390)
T PRK12298 314 SAASGLGVKELCWDLMTFIEENPR 337 (390)
T ss_pred ECCCCcCHHHHHHHHHHHhhhCcc
Confidence 999999999999999999887644
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.92 E-value=1e-23 Score=139.82 Aligned_cols=146 Identities=24% Similarity=0.296 Sum_probs=105.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYR 79 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~ 79 (185)
++|+++|++|+|||||++++++.... ....++.+.+.....+... ...+++|||||...... .....+.
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~ 79 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG--GIPVRLIDTAGIRETEDEIEKIGIERAREAIE 79 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC--CEEEEEEECCCcCCCcchHHHHHHHHHHHHHh
Confidence 58999999999999999999987643 2233444444444444443 45789999999654432 1234567
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... . ......+++++||
T Consensus 80 ~~~~~v~v~d~~~~~~~~~~~~~~~----------~~~~~vi~v~nK~D~~~~~~~---------~-~~~~~~~~~~~Sa 139 (157)
T cd04164 80 EADLVLFVIDASRGLDEEDLEILEL----------PADKPIIVVLNKSDLLPDSEL---------L-SLLAGKPIIAISA 139 (157)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHh----------hcCCCEEEEEEchhcCCcccc---------c-cccCCCceEEEEC
Confidence 8999999999998777765433322 126799999999999864221 1 2223478999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKNA 176 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~ 176 (185)
+++.|+++++++|.+.+
T Consensus 140 ~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 140 KTGEGLDELKEALLELA 156 (157)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 99999999999998764
No 156
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.92 E-value=4e-24 Score=147.50 Aligned_cols=164 Identities=14% Similarity=0.149 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCcceeeeEEEEEEE-------------------------C--C----
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGADFLTKEVQF-------------------------E--D---- 54 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~~~~~~~~~~-------------------------~--~---- 54 (185)
++|+++|+.|+|||||+.++.+... ........+.......... . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 4799999999999999999975521 1111111111111111110 0 0
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 134 (185)
....+.||||||++.+...+...+..+|++++|+|+.++.........+..+. ... ..|+++|+||+|+.....
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~-----~~~iiivvNK~Dl~~~~~ 154 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMG-----LKHIIIVQNKIDLVKEEQ 154 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcC-----CCcEEEEEEchhccCHHH
Confidence 12678999999999888888888889999999999987321111111122121 111 237899999999975322
Q ss_pred eeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 135 RVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.....+.+.++.... ..++++++||++|+|+++++++|.+.++.
T Consensus 155 ~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 155 ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 222234444444432 24789999999999999999999988765
No 157
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.4e-24 Score=133.88 Aligned_cols=159 Identities=17% Similarity=0.277 Sum_probs=125.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+.+|..++||||++..|.... +....||++.......+ .++.+.+||.+|++..+..|.+|+....++||
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 46899999999999999999998776 34556777766554444 45789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (185)
|+|..+.+..+++..-+..+ .........|++|.+||.|++.. ...+++..+.+- ...+.+.++++.+|
T Consensus 91 V~Dsa~~dr~eeAr~ELh~i---i~~~em~~~~~LvlANkQDlp~A----~~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRI---INDREMRDAIILILANKQDLPDA----MKPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred EEeccchhhHHHHHHHHHHH---hCCHhhhcceEEEEecCcccccc----cCHHHHHHHhccccccCCccEeeccccccc
Confidence 99999887777665444433 34444457799999999999865 455666555432 22477899999999
Q ss_pred CCHHHHHHHHHHHHh
Q 029929 163 FNVEAAFECIAKNAL 177 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~ 177 (185)
+|+.+-+.||...+.
T Consensus 164 dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNLK 178 (180)
T ss_pred hhHHHHHHHHHhhcc
Confidence 999999999988764
No 158
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.92 E-value=9.5e-24 Score=164.84 Aligned_cols=158 Identities=22% Similarity=0.206 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
+.|+++|+.++|||||+++|++.. +.....++.+.+.....+...+ ..+.+||+||++.+...+..++..+|+++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 468999999999999999999643 3334455666666655566554 78899999999999888888899999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcC---CCcEEEee
Q 029929 86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETS 158 (185)
Q Consensus 86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s 158 (185)
+|+|+++ +.+.+.+. + + .. .++| +++|+||+|+.+........+++..+....+ .++++++|
T Consensus 79 LVVDa~~G~~~qT~ehl~-i---l-~~------lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vS 147 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHLA-V---L-DL------LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTS 147 (581)
T ss_pred EEEECCCCCcHHHHHHHH-H---H-HH------cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEe
Confidence 9999997 34443332 1 1 11 1567 9999999999864322233445556555442 47999999
Q ss_pred eccCCCHHHHHHHHHHHHhhc
Q 029929 159 AKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|++|.|+++++.+|...+...
T Consensus 148 A~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 148 AKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCCCchhHHHHHHHHHHhC
Confidence 999999999999998776543
No 159
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.92 E-value=1.8e-23 Score=159.51 Aligned_cols=163 Identities=21% Similarity=0.167 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-----------c
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-----------G 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~ 74 (185)
..++|+++|.+|+|||||++++++.... ....++++.+.....+..++ ..+.+|||||....... .
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG--KKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC--cEEEEEECCCccccccchhhHHHHHHHHH
Confidence 4589999999999999999999987643 33345555555555555544 36789999996443221 1
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCceeecHHHHHHHHHhcCCCc
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIP 153 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~ 153 (185)
..+++.+|++|+|+|++++.+.... .++..+.. .+.|+++|+||+|+.. ..........+.......+.++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL-RIAGLILE-------AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAP 320 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH-------cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCc
Confidence 3467889999999999987665543 23332221 1579999999999982 1111111222222222234579
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 154 YFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
++++||++|.|+.++++++.+.+...
T Consensus 321 vi~~SA~~g~~v~~l~~~i~~~~~~~ 346 (429)
T TIGR03594 321 IVFISALTGQGVDKLLDAIDEVYENA 346 (429)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998876543
No 160
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.9e-23 Score=158.53 Aligned_cols=167 Identities=19% Similarity=0.126 Sum_probs=114.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcc---cccchhcc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQS---LGVAFYRG 80 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~---~~~~~~~~ 80 (185)
...|+|+|.+|||||||+++|++........++++..+....+.+.+ ..+++||+||... ... .....+..
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhier 236 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHIER 236 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence 35899999999999999999998765544556666666666666554 5789999999421 111 12234577
Q ss_pred CcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCC-------CCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929 81 ADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPS-------DPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (185)
Q Consensus 81 ~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (185)
+|++|+|+|+++. +.++.+..+..++..+.... ...+.|+++|+||+|+... .. ..+.........
T Consensus 237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~e-l~e~l~~~l~~~ 313 (500)
T PRK12296 237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RE-LAEFVRPELEAR 313 (500)
T ss_pred cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HH-HHHHHHHHHHHc
Confidence 9999999999853 34444444555554433210 1236799999999999753 11 122233333334
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+ ++++++||+++.|+++++.+|.+.+...+
T Consensus 314 g-~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 314 G-WPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred C-CeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 4 79999999999999999999999886543
No 161
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.92 E-value=2.4e-24 Score=147.06 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC------------------ccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (185)
..++|+++|+.++|||||+++|........ .....+.......+........++++|+||+.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 458999999999999999999985442211 11122223323333212556789999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHH-HHHH
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCA 147 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~ 147 (185)
.+.......+..+|++|+|+|+.+...... ...+..+... ++|+++++||+|+.... .....+++. .+.+
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~~-------~~p~ivvlNK~D~~~~~-~~~~~~~~~~~l~~ 152 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILREL-------GIPIIVVLNKMDLIEKE-LEEIIEEIKEKLLK 152 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHHT-------T-SEEEEEETCTSSHHH-HHHHHHHHHHHHHH
T ss_pred ceeecccceecccccceeeeeccccccccc-cccccccccc-------ccceEEeeeeccchhhh-HHHHHHHHHHHhcc
Confidence 999888888999999999999987533322 2222222221 77999999999998321 222223333 3333
Q ss_pred hcC-----CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 148 SKG-----NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 148 ~~~-----~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
... .++++++||.+|.|+.++++.|.+.+|
T Consensus 153 ~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 153 EYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred ccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 332 368999999999999999999998876
No 162
>COG1159 Era GTPase [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=147.29 Aligned_cols=164 Identities=20% Similarity=0.114 Sum_probs=114.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccchh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFY 78 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~ 78 (185)
.--|+++|.||+|||||+|++.+.+.. .+..+.++.......+..+ ..++.|+||||-. .+.......+
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~--~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl 83 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTD--NAQIIFVDTPGIHKPKHALGELMNKAARSAL 83 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcC--CceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence 357899999999999999999999876 3344444444434444333 5799999999922 2233345567
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
..+|+++||+|++.+-.... ...+..+.. .+.|+++++||+|..... ..............+...++++|
T Consensus 84 ~dvDlilfvvd~~~~~~~~d-~~il~~lk~-------~~~pvil~iNKID~~~~~--~~l~~~~~~~~~~~~f~~ivpiS 153 (298)
T COG1159 84 KDVDLILFVVDADEGWGPGD-EFILEQLKK-------TKTPVILVVNKIDKVKPK--TVLLKLIAFLKKLLPFKEIVPIS 153 (298)
T ss_pred ccCcEEEEEEeccccCCccH-HHHHHHHhh-------cCCCeEEEEEccccCCcH--HHHHHHHHHHHhhCCcceEEEee
Confidence 89999999999997332221 222233321 257999999999988752 21233344444445567899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 159 AKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
|++|.|++.+.+.+...+++..+-+
T Consensus 154 A~~g~n~~~L~~~i~~~Lpeg~~~y 178 (298)
T COG1159 154 ALKGDNVDTLLEIIKEYLPEGPWYY 178 (298)
T ss_pred ccccCCHHHHHHHHHHhCCCCCCcC
Confidence 9999999999999999998876543
No 163
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.92 E-value=7.2e-24 Score=143.25 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=104.5
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh----ccc---ccchhccCcEEE
Q 029929 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSL---GVAFYRGADCCV 85 (185)
Q Consensus 13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~---~~~~~~~~d~~i 85 (185)
++|++|+|||||++++.+........+.++.+.....+.+.+ ...+.+|||||.... ... ....+..+|+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 589999999999999998865322233333444444444441 457889999996321 112 233467899999
Q ss_pred EEEECCCh------hhHHHHHHHHHHHHhhcCC---CCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 86 LVYDVNVM------KSFDNLNNWREEFLIQASP---SDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 86 ~v~d~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+|+|+.+. .+++....+...+...... ....+.|+++|+||+|+.... ............ ....++++
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~--~~~~~~~~~~~~-~~~~~~~~ 156 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE--ELEEELVRELAL-EEGAEVVP 156 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh--HHHHHHHHHHhc-CCCCCEEE
Confidence 99999987 4677666666665433211 001267999999999997542 111111122222 23478999
Q ss_pred eeeccCCCHHHHHHHHHHH
Q 029929 157 TSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~ 175 (185)
+||+++.|++++++++...
T Consensus 157 ~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 157 ISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EehhhhcCHHHHHHHHHhh
Confidence 9999999999999998764
No 164
>PRK00089 era GTPase Era; Reviewed
Probab=99.92 E-value=3.6e-23 Score=150.41 Aligned_cols=162 Identities=20% Similarity=0.142 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFY 78 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~ 78 (185)
.-.|+++|++|||||||+|++++.+.... ..+.++.......... ...++.++||||..... ......+
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~--~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~ 82 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE--DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL 82 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc--CCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence 35689999999999999999998876422 2232222222222222 23689999999953321 2233456
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
..+|++++|+|+++..+.. ...+...+. . .+.|+++|+||+|+... ..........+....+..+++++|
T Consensus 83 ~~~D~il~vvd~~~~~~~~-~~~i~~~l~----~---~~~pvilVlNKiDl~~~--~~~l~~~~~~l~~~~~~~~i~~iS 152 (292)
T PRK00089 83 KDVDLVLFVVDADEKIGPG-DEFILEKLK----K---VKTPVILVLNKIDLVKD--KEELLPLLEELSELMDFAEIVPIS 152 (292)
T ss_pred hcCCEEEEEEeCCCCCChh-HHHHHHHHh----h---cCCCEEEEEECCcCCCC--HHHHHHHHHHHHhhCCCCeEEEec
Confidence 8899999999998732211 122222221 1 15799999999999743 222333444444444557899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcCC
Q 029929 159 AKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
|+++.|+++++++|.+.+++..+
T Consensus 153 A~~~~gv~~L~~~L~~~l~~~~~ 175 (292)
T PRK00089 153 ALKGDNVDELLDVIAKYLPEGPP 175 (292)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCC
Confidence 99999999999999999876553
No 165
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.92 E-value=3.8e-23 Score=161.62 Aligned_cols=161 Identities=18% Similarity=0.227 Sum_probs=114.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC-------CCCccC------cceeeeEEEE--EEE---CCcEEEEEEecCCChhh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKF-------SNQYKA------TIGADFLTKE--VQF---EDRLFTLQIWDTAGQER 69 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~-------~~~~~~------~~~~~~~~~~--~~~---~~~~~~~~~~D~~g~~~ 69 (185)
..+++++|+.++|||||+++|+.... ...+.. ..+.++.... +.+ ++..+.+++|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 46899999999999999999986421 111111 1233333222 222 45668999999999999
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (185)
+...+..+++.+|++|+|+|+++..+......|..... .+.|+++|+||+|+.... ..+...++....
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~--------~~ipiIiViNKiDl~~~~----~~~~~~el~~~l 150 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE--------NDLEIIPVINKIDLPSAD----PERVKKEIEEVI 150 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH--------cCCCEEEEEECcCCCccC----HHHHHHHHHHHh
Confidence 99999999999999999999998766665555544331 167999999999987532 111222333333
Q ss_pred C--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 150 G--NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 150 ~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+ ...++++||++|.|+++++++|.+.++...
T Consensus 151 g~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 151 GLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred CCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 3 135899999999999999999999887543
No 166
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.92 E-value=1.9e-23 Score=158.99 Aligned_cols=149 Identities=26% Similarity=0.318 Sum_probs=110.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (185)
..++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||....... ...+
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3489999999999999999999987642 34456666666666666654 56889999997643322 2235
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+..+|++++|+|++++.+++....|.. ..+.|+++|+||+|+..... .. .....+++++
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~~~l~~----------~~~~piiiV~NK~DL~~~~~--~~---------~~~~~~~i~i 350 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDDEILEE----------LKDKPVIVVLNKADLTGEID--LE---------EENGKPVIRI 350 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHHHHHHh----------cCCCCcEEEEEhhhccccch--hh---------hccCCceEEE
Confidence 788999999999999877765433322 22679999999999975321 11 1223689999
Q ss_pred eeccCCCHHHHHHHHHHHHhh
Q 029929 158 SAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~ 178 (185)
||++|.|+++++++|.+.+..
T Consensus 351 SAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 351 SAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred EeeCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998864
No 167
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=7.5e-25 Score=140.90 Aligned_cols=161 Identities=26% Similarity=0.332 Sum_probs=120.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC---C----CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKF---S----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
.+.|+++|..+||||||+.++-.... . ....++.+.......+ . ...+.|||.+|++..+++|..|+..
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~--~~~l~fwdlgGQe~lrSlw~~yY~~ 92 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C--NAPLSFWDLGGQESLRSLWKKYYWL 92 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c--cceeEEEEcCChHHHHHHHHHHHHH
Confidence 47899999999999999988753221 1 2233444444333333 2 4588999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH---h--cCCCcEE
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA---S--KGNIPYF 155 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~---~--~~~~~~~ 155 (185)
+|++|+++|+++++.++.....++.+..+ ....+.|+++.+||.|+.+.- ...++..... . ....++.
T Consensus 93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~---E~leg~p~L~lankqd~q~~~----~~~El~~~~~~~e~~~~rd~~~~ 165 (197)
T KOG0076|consen 93 AHGIIYVIDATDRERFEESKTAFEKVVEN---EKLEGAPVLVLANKQDLQNAM----EAAELDGVFGLAELIPRRDNPFQ 165 (197)
T ss_pred hceeEEeecCCCHHHHHHHHHHHHHHHHH---HHhcCCchhhhcchhhhhhhh----hHHHHHHHhhhhhhcCCccCccc
Confidence 99999999999999998876655554433 223388999999999998752 2223322222 1 2357899
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhc
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
++||.+|+|+++.+.|++..+.++
T Consensus 166 pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 166 PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cchhhhcccHHHHHHHHHHHHhhc
Confidence 999999999999999999999887
No 168
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.91 E-value=3.8e-23 Score=142.16 Aligned_cols=161 Identities=22% Similarity=0.149 Sum_probs=105.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh----------hhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ----------ERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~ 75 (185)
...++|+++|.+|+|||||++++++..+.....++.+.+........ ...+.+|||||. ..+.....
T Consensus 22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 35589999999999999999999987644333444443333332222 257899999994 23333334
Q ss_pred chhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 76 AFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 76 ~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
.+++. .+++++|+|.+.+.+.... .+...+. . .+.|+++++||+|+.+....+...+.+....... ..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~----~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~-~~ 169 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK----E---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFG-DD 169 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH----H---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhc-CC
Confidence 44443 4678889998875443321 1112121 1 1678999999999976533333334444444443 37
Q ss_pred cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 153 PYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++++||+++.|++++++.|.+.+.+
T Consensus 170 ~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 170 EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 89999999999999999999887654
No 169
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.91 E-value=1.9e-23 Score=141.65 Aligned_cols=151 Identities=21% Similarity=0.165 Sum_probs=99.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG 74 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~ 74 (185)
+...++|+++|.+|+|||||++++++..+.....++.+.+.....+..++ .+.+|||||.. .+....
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~ 91 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLI 91 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHH
Confidence 35678999999999999999999998764333334444333333333332 68899999942 223333
Q ss_pred cchhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929 75 VAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (185)
Q Consensus 75 ~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 150 (185)
..+++ .+|++++|+|++++-+.... .++..+.. .+.|+++++||+|+..........++++......+
T Consensus 92 ~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~-------~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~ 163 (179)
T TIGR03598 92 EEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE-------RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDAD 163 (179)
T ss_pred HHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccC
Confidence 34444 36899999999875444433 22222221 16799999999999764333344555555555443
Q ss_pred CCcEEEeeeccCCCHH
Q 029929 151 NIPYFETSAKEGFNVE 166 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~ 166 (185)
.++++++||++|+|++
T Consensus 164 ~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 164 DPSVQLFSSLKKTGID 179 (179)
T ss_pred CCceEEEECCCCCCCC
Confidence 3589999999999973
No 170
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.91 E-value=7.5e-23 Score=155.03 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=110.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (185)
..++|+++|++|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||...+... ...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4589999999999999999999987542 33456666666666666654 46789999997544322 2356
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+... ....+....+ .+++.+
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~-------~~~piIlV~NK~Dl~~~--------~~~~~~~~~~-~~~~~v 341 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK-------SKKPFILVLNKIDLKIN--------SLEFFVSSKV-LNSSNL 341 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH--HHHHHhh-------CCCCEEEEEECccCCCc--------chhhhhhhcC-CceEEE
Confidence 7899999999999998777654 4444321 26799999999999643 1122333343 688999
Q ss_pred eeccCCCHHHHHHHHHHHHhhc
Q 029929 158 SAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|+++ .|++++++.|.+.+...
T Consensus 342 Sak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 342 SAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEec-CCHHHHHHHHHHHHHHH
Confidence 9998 68999998888877653
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.91 E-value=7.3e-23 Score=159.38 Aligned_cols=156 Identities=23% Similarity=0.234 Sum_probs=111.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.++.+|+++|+.++|||||++++.+..+.....++.+.+.....+...+. ..++||||||+..|..++...+..+|++|
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaI 163 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVV 163 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEE
Confidence 45689999999999999999999988776655555555555555554432 27899999999999998888899999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-------c-CCCcEEEe
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-------K-GNIPYFET 157 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~ 157 (185)
+|+|+++.........+ ... . ..++|+++++||+|+.+.. .+........ . +..+++++
T Consensus 164 LVVda~dgv~~qT~e~i-~~~----~---~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~~~~~v~i 230 (587)
T TIGR00487 164 LVVAADDGVMPQTIEAI-SHA----K---AANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGGDTIFVPV 230 (587)
T ss_pred EEEECCCCCCHhHHHHH-HHH----H---HcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCCCceEEEE
Confidence 99999873322222111 111 1 1267999999999997532 1222222211 1 13579999
Q ss_pred eeccCCCHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~ 175 (185)
||++|+|+.+++++|...
T Consensus 231 SAktGeGI~eLl~~I~~~ 248 (587)
T TIGR00487 231 SALTGDGIDELLDMILLQ 248 (587)
T ss_pred ECCCCCChHHHHHhhhhh
Confidence 999999999999998753
No 172
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=3.2e-23 Score=137.53 Aligned_cols=147 Identities=20% Similarity=0.169 Sum_probs=99.4
Q ss_pred EEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc--------cccchhccCc
Q 029929 12 IILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS--------LGVAFYRGAD 82 (185)
Q Consensus 12 ~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~d 82 (185)
+++|.+|+|||||++++++.... ....+..+.+.........+ ..+.+|||||...+.. .....++.+|
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999987532 12233333344344444433 6789999999766433 3345678899
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
++++|+|+.+..+.... .+...+.. . +.|+++|+||+|+.+.... .......+..+++++|++++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~~~----~---~~piiiv~nK~D~~~~~~~-------~~~~~~~~~~~~~~~Sa~~~ 143 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYLRK----S---KKPVILVVNKVDNIKEEDE-------AAEFYSLGFGEPIPISAEHG 143 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHHHh----c---CCCEEEEEECcccCChHHH-------HHHHHhcCCCCeEEEecccC
Confidence 99999999875444332 12222211 1 5799999999999764211 12223344347899999999
Q ss_pred CCHHHHHHHHHHH
Q 029929 163 FNVEAAFECIAKN 175 (185)
Q Consensus 163 ~~i~~~~~~i~~~ 175 (185)
.|+++++++|.+.
T Consensus 144 ~gv~~l~~~l~~~ 156 (157)
T cd01894 144 RGIGDLLDAILEL 156 (157)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999875
No 173
>PRK11058 GTPase HflX; Provisional
Probab=99.91 E-value=5.1e-23 Score=155.13 Aligned_cols=159 Identities=17% Similarity=0.174 Sum_probs=111.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh--cccc------cchhc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLG------VAFYR 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~------~~~~~ 79 (185)
.++|+++|.+|||||||+|+|++........++.+.+.....+...+. ..+.+|||+|.... ...+ ...+.
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 368999999999999999999987765444556666666666665543 26789999996321 1111 23357
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc-EEEee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP-YFETS 158 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s 158 (185)
.+|++++|+|++++.+.+.+..+...+.... ..+.|+++|+||+|+.... . ..... ...+ .+ ++++|
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~----~~~~pvIiV~NKiDL~~~~--~---~~~~~--~~~~-~~~~v~IS 343 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENIEAVNTVLEEID----AHEIPTLLVMNKIDMLDDF--E---PRIDR--DEEN-KPIRVWLS 343 (426)
T ss_pred cCCEEEEEEeCCCccHHHHHHHHHHHHHHhc----cCCCCEEEEEEcccCCCch--h---HHHHH--HhcC-CCceEEEe
Confidence 8999999999999887777654444333221 1267999999999997431 1 01111 1122 34 58899
Q ss_pred eccCCCHHHHHHHHHHHHhhc
Q 029929 159 AKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|++|.|+++++++|.+.+...
T Consensus 344 AktG~GIdeL~e~I~~~l~~~ 364 (426)
T PRK11058 344 AQTGAGIPLLFQALTERLSGE 364 (426)
T ss_pred CCCCCCHHHHHHHHHHHhhhc
Confidence 999999999999999988643
No 174
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.91 E-value=4.5e-23 Score=130.84 Aligned_cols=117 Identities=32% Similarity=0.512 Sum_probs=86.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC--CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
||+|+|++|||||||+++|++.... ....+..+.+..............+.+||++|++.+.......+..+|++++|
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv 80 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV 80 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence 7999999999999999999988876 22333444455555556666666799999999988888777779999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
||++++++++.+..++..+...... ..++|+++|+||.|
T Consensus 81 ~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 81 YDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp EECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred EcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 9999999999875553333322211 12589999999998
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.91 E-value=9.1e-23 Score=137.38 Aligned_cols=158 Identities=23% Similarity=0.219 Sum_probs=102.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-----------cccc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-----------SLGV 75 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-----------~~~~ 75 (185)
+++|+++|.+|+|||||++++++.... ....++.+.......+..++ ..+.+|||||..... ....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG--KKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC--eeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 579999999999999999999987633 22233333333334444443 357799999954321 0112
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--eeecHHHHHHHHHhcCCCc
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--RVVSEKKAKAWCASKGNIP 153 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~ 153 (185)
..+..+|++++|+|++++.+.... .+..... . .+.|+++++||+|+..... .....+.+..........+
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDL-RIAGLIL----E---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAP 151 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHH----h---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCc
Confidence 345789999999999987665443 2222221 1 1569999999999976421 1111112222111122478
Q ss_pred EEEeeeccCCCHHHHHHHHHHH
Q 029929 154 YFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
++++||+++.|+.++++++.+.
T Consensus 152 ~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 152 IVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred eEEEeccCCCCHHHHHHHHHHh
Confidence 9999999999999999998764
No 176
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.91 E-value=9.6e-23 Score=156.56 Aligned_cols=155 Identities=21% Similarity=0.275 Sum_probs=108.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~ 77 (185)
...+|+++|.+|+|||||++++++.... ....++.+.+.........+ ..+.+|||||... +......+
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG--RRFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC--cEEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 3479999999999999999999987643 33455555555555555544 4578999999652 23334557
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++|+|+|+++..+... ..+...+.. .++|+++|+||+|+.... .+....+ ..+....+++
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~-------~~~piilV~NK~Dl~~~~-----~~~~~~~--~~g~~~~~~i 179 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD-EAVARVLRR-------SGKPVILAANKVDDERGE-----ADAAALW--SLGLGEPHPV 179 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECccCCccc-----hhhHHHH--hcCCCCeEEE
Confidence 789999999999998755433 233333321 267999999999986421 1111122 2232345799
Q ss_pred eeccCCCHHHHHHHHHHHHhh
Q 029929 158 SAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~ 178 (185)
||++|.|+.+++++|.+.+++
T Consensus 180 SA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 180 SALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred EcCCCCCcHHHHHHHHhhccc
Confidence 999999999999999998866
No 177
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.91 E-value=4.6e-23 Score=136.82 Aligned_cols=143 Identities=20% Similarity=0.234 Sum_probs=98.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----hhcccccchhccCcEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV 85 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i 85 (185)
+|+++|.+|+|||||++++.+..... ..+. ...+... .+|||||.. .+.......+..+|+++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~--~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il 69 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA--RKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI 69 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC--ccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence 79999999999999999988654211 1111 1122222 269999962 22222233468999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCC
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFN 164 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 164 (185)
+|+|+++.+++.. .++..+ . .+.|+++++||+|+.+. ..+.+.+++...+. .|++++||++|+|
T Consensus 70 ~v~d~~~~~s~~~--~~~~~~---~-----~~~~ii~v~nK~Dl~~~-----~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 70 YVHGANDPESRLP--AGLLDI---G-----VSKRQIAVISKTDMPDA-----DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred EEEeCCCcccccC--HHHHhc---c-----CCCCeEEEEEccccCcc-----cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 9999998766532 222221 1 15689999999998642 23455566655553 5999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
++++++++.+.+.+..
T Consensus 135 i~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 135 VQQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHHHhchhhh
Confidence 9999999988876554
No 178
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.91 E-value=1.9e-22 Score=134.85 Aligned_cols=157 Identities=20% Similarity=0.120 Sum_probs=102.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--------ccccchhc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--------SLGVAFYR 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--------~~~~~~~~ 79 (185)
..+|+++|++|+|||||++++.+...........+.. .............+.+|||||..... ......+.
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTR-NRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCcee-ceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999876532211111111 11112223334678899999954322 22344578
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++++|+|+.++.+.. ...+...+... +.|+++|+||+|+... .....+....+....+..+++++|+
T Consensus 82 ~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~-------~~~~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~s~ 151 (168)
T cd04163 82 DVDLVLFVVDASEPIGEG-DEFILELLKKS-------KTPVILVLNKIDLVKD--KEDLLPLLEKLKELGPFAEIFPISA 151 (168)
T ss_pred hCCEEEEEEECCCccCch-HHHHHHHHHHh-------CCCEEEEEEchhcccc--HHHHHHHHHHHHhccCCCceEEEEe
Confidence 899999999999862211 12222323211 5699999999999743 2233333444444444578999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKN 175 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~ 175 (185)
+++.|+++++++|.+.
T Consensus 152 ~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 152 LKGENVDELLEEIVKY 167 (168)
T ss_pred ccCCChHHHHHHHHhh
Confidence 9999999999999765
No 179
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.91 E-value=6.2e-23 Score=162.11 Aligned_cols=162 Identities=22% Similarity=0.280 Sum_probs=112.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee--EEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
.++..|+++|+.++|||||+++|....+.....++.+.+. ....+...+....++||||||+..|..++..++..+|+
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi 321 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI 321 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence 4668999999999999999999998776654444444332 22233333456789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH---HHhc-CCCcEEEeee
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW---CASK-GNIPYFETSA 159 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~s~ 159 (185)
+|+|+|+++.........+ ..+ . ..++|+++++||+|+...... ...+.+..+ .... +.++++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~----k---~~~iPiIVViNKiDl~~~~~e-~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYI----Q---AANVPIIVAINKIDKANANTE-RIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHH----H---hcCceEEEEEECCCccccCHH-HHHHHHHHhccchHhhCCCceEEEEEC
Confidence 9999999874322222211 111 1 126799999999999753211 111111111 1111 2378999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKNA 176 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~ 176 (185)
++|.|+.+++++|....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998754
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.90 E-value=9.2e-23 Score=162.40 Aligned_cols=160 Identities=21% Similarity=0.210 Sum_probs=112.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
..++..|+++|+.++|||||+++|....+.....++.+.+.....+.+. +..++||||||+..|..++...+..+|++
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDia 364 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIV 364 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence 3567899999999999999999999877665545555444444444444 36789999999999999988889999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH---HHHhc-CCCcEEEeeec
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA---WCASK-GNIPYFETSAK 160 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~s~~ 160 (185)
|+|+|+++.........+ ... . ..++|+++++||+|+...+.... ..++.. +.... +.++++++||+
T Consensus 365 ILVVdAddGv~~qT~e~i-~~a----~---~~~vPiIVviNKiDl~~a~~e~V-~~eL~~~~~~~e~~g~~vp~vpvSAk 435 (787)
T PRK05306 365 VLVVAADDGVMPQTIEAI-NHA----K---AAGVPIIVAINKIDKPGANPDRV-KQELSEYGLVPEEWGGDTIFVPVSAK 435 (787)
T ss_pred EEEEECCCCCCHhHHHHH-HHH----H---hcCCcEEEEEECccccccCHHHH-HHHHHHhcccHHHhCCCceEEEEeCC
Confidence 999999873222221111 111 1 12679999999999975321111 111111 11111 24789999999
Q ss_pred cCCCHHHHHHHHHHH
Q 029929 161 EGFNVEAAFECIAKN 175 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~ 175 (185)
+|.|+.+++++|...
T Consensus 436 tG~GI~eLle~I~~~ 450 (787)
T PRK05306 436 TGEGIDELLEAILLQ 450 (787)
T ss_pred CCCCchHHHHhhhhh
Confidence 999999999998753
No 181
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.90 E-value=2.2e-22 Score=138.73 Aligned_cols=163 Identities=18% Similarity=0.273 Sum_probs=109.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccC-cEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGA-DCCVLVY 88 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~ 88 (185)
+|+++|++|||||||+++|....+.....++ ............+....+.+||+||+..++..+..+++.+ +++|+|+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv 80 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV 80 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence 6899999999999999999988765443322 2222222221123456789999999999988888889998 9999999
Q ss_pred ECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH----HHHh---------------
Q 029929 89 DVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA----WCAS--------------- 148 (185)
Q Consensus 89 d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~----~~~~--------------- 148 (185)
|+.+. .++..+..++..+...... ...++|+++++||+|+..........+.+.+ +...
T Consensus 81 D~~~~~~~~~~~~~~l~~il~~~~~-~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~~~r~~~l~~~~~~~~~~ 159 (203)
T cd04105 81 DSATFQKNLKDVAEFLYDILTDLEK-VKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLRESRSKSLSSLDGDEGSK 159 (203)
T ss_pred ECccchhHHHHHHHHHHHHHHHHhh-ccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 99986 6676666665555433221 1237899999999998764322211221111 1100
Q ss_pred ----------------cCCCcEEEeeeccCC-CHHHHHHHHHH
Q 029929 149 ----------------KGNIPYFETSAKEGF-NVEAAFECIAK 174 (185)
Q Consensus 149 ----------------~~~~~~~~~s~~~~~-~i~~~~~~i~~ 174 (185)
...+.++++|++.+. |++.+.+||.+
T Consensus 160 ~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~ 202 (203)
T cd04105 160 ESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE 202 (203)
T ss_pred cccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence 012457788888776 69999999864
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.90 E-value=7e-22 Score=150.99 Aligned_cols=162 Identities=22% Similarity=0.174 Sum_probs=109.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----------cc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LG 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~ 74 (185)
..++|+++|.+|+|||||++++++.... ....++++.+.....+...+ ..+.+|||||...... ..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4699999999999999999999976532 34445555555444444443 4678999999532211 11
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+++.+|++|+|+|++++.+.... .+...+.. .+.|+++++||+|+..........+.+.........+++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~-------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i 321 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL-RIAGLALE-------AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPI 321 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCE
Confidence 2356889999999999987665543 22232221 157999999999998432222222233333333345899
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhh
Q 029929 155 FETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++||++|.|+.++++.+.+....
T Consensus 322 ~~~SA~~~~gv~~l~~~i~~~~~~ 345 (435)
T PRK00093 322 VFISALTGQGVDKLLEAIDEAYEN 345 (435)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998876653
No 183
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.89 E-value=3.9e-22 Score=132.34 Aligned_cols=154 Identities=17% Similarity=0.152 Sum_probs=103.3
Q ss_pred EEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-------cccchhccCcEE
Q 029929 13 ILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVAFYRGADCC 84 (185)
Q Consensus 13 viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~d~~ 84 (185)
++|++|+|||||++++++.... .......+............ ...+.+||+||...... ....+++.+|++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 5899999999999999987655 33333333333333333221 45889999999665443 333467899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|+++........ +...... .+.|+++|+||+|+..........+............+++++|++++.|
T Consensus 80 l~v~~~~~~~~~~~~~-~~~~~~~-------~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~ 151 (163)
T cd00880 80 LFVVDADLRADEEEEK-LLELLRE-------RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEG 151 (163)
T ss_pred EEEEeCCCCCCHHHHH-HHHHHHh-------cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCC
Confidence 9999999877666543 2222211 2679999999999986432221111112222333458999999999999
Q ss_pred HHHHHHHHHHH
Q 029929 165 VEAAFECIAKN 175 (185)
Q Consensus 165 i~~~~~~i~~~ 175 (185)
++++++++.+.
T Consensus 152 v~~l~~~l~~~ 162 (163)
T cd00880 152 IDELREALIEA 162 (163)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 184
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.89 E-value=5.3e-22 Score=154.40 Aligned_cols=158 Identities=23% Similarity=0.215 Sum_probs=103.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhhh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 70 (185)
++.-|+++|++++|||||+++|.+..+......+.+.+.....+..+ .....+.+|||||++.+
T Consensus 3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 34579999999999999999999887654322222221111111111 01124889999999999
Q ss_pred cccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----------e
Q 029929 71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----------V 137 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----------~ 137 (185)
..++..+++.+|++++|+|+++ +.+++.+.. +. . .++|+++++||+|+....... .
T Consensus 83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~----~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LR----M---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HH----H---cCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 9998889999999999999987 444443321 11 1 167999999999997421000 0
Q ss_pred cHH----H--------HHHHHH-------------hcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 138 SEK----K--------AKAWCA-------------SKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 138 ~~~----~--------~~~~~~-------------~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
... . ..++.. ..+..+++++||++|+|+++++.+|...
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 000 0 011111 1234789999999999999999988753
No 185
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.89 E-value=6.7e-22 Score=158.33 Aligned_cols=163 Identities=21% Similarity=0.179 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hccc-c
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSL-G 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~-~ 74 (185)
..++|+++|.+|+|||||+++|++.... ....++++.+.....+.+++. .+.+|||||... +... .
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHH
Confidence 3589999999999999999999988743 334455556665556666654 456899999532 1111 1
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+++.+|++++|+|+++..+..... ++..+.. .++|+++|+||+|+.+....+.....+..........++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~-------~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~i 598 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD-------AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARR 598 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCE
Confidence 23467899999999999877766543 3333322 167999999999997642211112222222122334688
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+++||++|.|++++++.+.+.+.+.
T Consensus 599 i~iSAktg~gv~~L~~~i~~~~~~~ 623 (712)
T PRK09518 599 VNLSAKTGWHTNRLAPAMQEALESW 623 (712)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988764
No 186
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.89 E-value=1.1e-21 Score=153.71 Aligned_cols=162 Identities=17% Similarity=0.208 Sum_probs=111.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------CccCcceeeeEEEEEEE---CCcEEEEEEecCCChh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE 68 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~ 68 (185)
+..+++++|+.++|||||+.+|+..... . ....+.+.......+.+ ++..+.+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 4569999999999999999999763211 0 00112222221222222 4557899999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS 148 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (185)
++...+..+++.+|++|+|+|+++.........|..... .+.|+++|+||+|+..... .....++...
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~--------~~lpiIvViNKiDl~~a~~----~~v~~ei~~~ 153 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE--------NDLEIIPVLNKIDLPAADP----ERVKQEIEDV 153 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEEEECCCCCcccH----HHHHHHHHHH
Confidence 999889999999999999999998655554444433221 1679999999999865321 1112222222
Q ss_pred cC--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 149 ~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.+ ...++++||++|.|+.+++++|.+.++...
T Consensus 154 lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 154 IGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred hCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 22 135899999999999999999999887543
No 187
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.89 E-value=3.6e-22 Score=127.51 Aligned_cols=136 Identities=25% Similarity=0.356 Sum_probs=97.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----hhhhcccccchhccCcEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----QERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~~~~~~~~~~~~~~d~~i 85 (185)
||+++|+.|||||||+++|.+..... ..|.... + .=.++|||| ...+..........+|+++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~~~--~KTq~i~-------~-----~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ 68 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEIRY--KKTQAIE-------Y-----YDNTIDTPGEYIENPRFYHALIVTAQDADVVL 68 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCCCc--CccceeE-------e-----cccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence 79999999999999999999876432 2222111 1 113479999 3444444455557899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|.|++++.+... ..+...+ +.|+|-|+||+|+... ....+..+++...-+.-.+|++|+.+|+|+
T Consensus 69 ll~dat~~~~~~p-P~fa~~f----------~~pvIGVITK~Dl~~~---~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 69 LLQDATEPRSVFP-PGFASMF----------NKPVIGVITKIDLPSD---DANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred EEecCCCCCccCC-chhhccc----------CCCEEEEEECccCccc---hhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 9999998654321 2222222 5699999999999842 245667777777777678899999999999
Q ss_pred HHHHHHHH
Q 029929 166 EAAFECIA 173 (185)
Q Consensus 166 ~~~~~~i~ 173 (185)
+++.++|.
T Consensus 135 ~eL~~~L~ 142 (143)
T PF10662_consen 135 EELKDYLE 142 (143)
T ss_pred HHHHHHHh
Confidence 99999885
No 188
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.89 E-value=1.5e-21 Score=130.77 Aligned_cols=153 Identities=24% Similarity=0.251 Sum_probs=100.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hcccccchhc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVAFYR 79 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~~~~ 79 (185)
.|+++|.+|+|||||++++.+........++.+.+.....+..+. .+.+||+||... +......++.
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence 479999999999999999996555444444444444443443333 888999999432 2233333333
Q ss_pred ---cCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH-hcCCCc
Q 029929 80 ---GADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-SKGNIP 153 (185)
Q Consensus 80 ---~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~ 153 (185)
..+++++++|.....+.. .+..|+... +.|+++++||+|+.................. .....+
T Consensus 78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~----------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL----------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPP 147 (170)
T ss_pred hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc----------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCc
Confidence 457889999998653222 223333322 4699999999999754323333333333333 234478
Q ss_pred EEEeeeccCCCHHHHHHHHHHH
Q 029929 154 YFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
++++|++++.|+.+++++|.+.
T Consensus 148 ~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 148 IILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred eEEEecCCCCCHHHHHHHHHHh
Confidence 9999999999999999999875
No 189
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.88 E-value=2.1e-21 Score=148.36 Aligned_cols=149 Identities=21% Similarity=0.229 Sum_probs=104.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccchhc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFYR 79 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~ 79 (185)
++|+++|.+|+|||||+++|.+.... ....++.+.+.......+.+ ..+.+|||||+.. +......++.
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 58999999999999999999987642 23345555555555555555 6789999999765 2233445678
Q ss_pred cCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 80 GADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
.+|++++|+|+.++.+... +..|+... +.|+++|+||+|+... .....++ ...+...++++
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~~----------~~piilv~NK~D~~~~------~~~~~~~-~~lg~~~~~~i 142 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRKS----------NKPVILVVNKVDGPDE------EADAYEF-YSLGLGEPYPI 142 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCcEEEEEECccCccc------hhhHHHH-HhcCCCCCEEE
Confidence 9999999999987544332 22232221 6799999999996542 1222222 23443358999
Q ss_pred eeccCCCHHHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~ 176 (185)
||++|.|+.++++++.+..
T Consensus 143 Sa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 143 SAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EeeCCCCHHHHHHHHHhhC
Confidence 9999999999999998743
No 190
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.88 E-value=2.1e-21 Score=132.61 Aligned_cols=150 Identities=18% Similarity=0.129 Sum_probs=98.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSN--------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (185)
.++|+++|+.++|||||+++|+...... ......+.+.......+.....++.++||||+..+...
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 4799999999999999999997531000 00012223333344445555678899999999988888
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhcC-
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASKG- 150 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~- 150 (185)
....+..+|++++|+|+........ ...+..+... ++| +++++||+|+..... .+...+++..+....+
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~-------~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~ 153 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV-------GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGF 153 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 8888899999999999986422221 2222222211 456 778999999974321 1223345555555443
Q ss_pred ---CCcEEEeeeccCCCH
Q 029929 151 ---NIPYFETSAKEGFNV 165 (185)
Q Consensus 151 ---~~~~~~~s~~~~~~i 165 (185)
.++++++||.+|.++
T Consensus 154 ~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 154 DGDNTPIVRGSALKALEG 171 (195)
T ss_pred cccCCeEEEeeCccccCC
Confidence 478999999999975
No 191
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.88 E-value=1.6e-22 Score=126.07 Aligned_cols=165 Identities=21% Similarity=0.292 Sum_probs=122.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
++.++|+++|-.++|||||+..|.+.+.. ...||.+.. .+.+.++ ..+.+++||.+|+...+..|..|+...|.+|
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~-hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI 90 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPR-HLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI 90 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChh-hccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence 56799999999999999999999887743 445555544 4444444 4579999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
||+|.++..-|+++..-+-++.+ ......+|+.|..||.|+....+.+.....+.-.......+.+-.||+..++|+
T Consensus 91 yVIDS~D~krfeE~~~el~ELle---eeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 91 YVIDSTDEKRFEEISEELVELLE---EEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEeCCchHhHHHHHHHHHHHhh---hhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 99999998888877655555543 333447899999999998754222111111111111222478899999999999
Q ss_pred HHHHHHHHHHHh
Q 029929 166 EAAFECIAKNAL 177 (185)
Q Consensus 166 ~~~~~~i~~~~~ 177 (185)
.+-.+|+.....
T Consensus 168 ~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 168 TDGSDWVQSNPE 179 (185)
T ss_pred cCcchhhhcCCC
Confidence 999999876544
No 192
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.88 E-value=4.2e-21 Score=146.53 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh--------hhhcccccchhcc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGVAFYRG 80 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~~~~~~ 80 (185)
+|+++|.+|+|||||+|+|++.... ....++.+.+.........+ ..+.+|||||. ..+......+++.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~--~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG--REFILIDTGGIEEDDDGLDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC--eEEEEEECCCCCCcchhHHHHHHHHHHHHHhh
Confidence 5899999999999999999987642 23345555555555555544 46899999995 3344455667789
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++++|+|+.+..+... ..+...+.+ .++|+++|+||+|+..... . ... ....+..+++++||.
T Consensus 79 ad~vl~vvD~~~~~~~~d-~~i~~~l~~-------~~~piilVvNK~D~~~~~~---~---~~~-~~~lg~~~~~~vSa~ 143 (429)
T TIGR03594 79 ADVILFVVDGREGLTPED-EEIAKWLRK-------SGKPVILVANKIDGKKEDA---V---AAE-FYSLGFGEPIPISAE 143 (429)
T ss_pred CCEEEEEEeCCCCCCHHH-HHHHHHHHH-------hCCCEEEEEECccCCcccc---c---HHH-HHhcCCCCeEEEeCC
Confidence 999999999987543332 122222221 1679999999999875421 1 112 234454589999999
Q ss_pred cCCCHHHHHHHHHHHHhhc
Q 029929 161 EGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~ 179 (185)
+|.|+.++++++.+.+...
T Consensus 144 ~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 144 HGRGIGDLLDAILELLPEE 162 (429)
T ss_pred cCCChHHHHHHHHHhcCcc
Confidence 9999999999999888654
No 193
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.88 E-value=1.7e-21 Score=146.90 Aligned_cols=170 Identities=16% Similarity=0.136 Sum_probs=108.8
Q ss_pred CccccceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEEEE------------------C--C----
Q 029929 2 ASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQF------------------E--D---- 54 (185)
Q Consensus 2 ~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~------------------~--~---- 54 (185)
=+++...++|+++|+.++|||||+.+|.+.... .......+.......... + +
T Consensus 3 ~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (411)
T PRK04000 3 WEKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETE 82 (411)
T ss_pred cccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccc
Confidence 345667799999999999999999999653211 111222222221111110 0 0
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 133 (185)
....+++|||||+..+..........+|++++|+|+.++. ...... .+..+. ... ..|+++|+||+|+.+..
T Consensus 83 ~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l~-~~~-----i~~iiVVlNK~Dl~~~~ 155 (411)
T PRK04000 83 LLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMALD-IIG-----IKNIVIVQNKIDLVSKE 155 (411)
T ss_pred cccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHHH-HcC-----CCcEEEEEEeeccccch
Confidence 1357899999999988777666677889999999999643 111111 112111 111 23689999999998643
Q ss_pred ceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 134 SRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
......+++..+.... ...+++++||++|.|+++++++|...++.
T Consensus 156 ~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 156 RALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred hHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCC
Confidence 2222234444444322 24789999999999999999999987764
No 194
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.88 E-value=1.3e-21 Score=147.73 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=107.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEE--------------EEE----CC------cEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE--------------VQF----ED------RLFT 58 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------~~~----~~------~~~~ 58 (185)
+..++|+++|+.++|||||+++|.+.... .......+....... +.. ++ ....
T Consensus 2 ~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 2 QPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred CceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 45689999999999999999999754221 111111111111000 000 11 1357
Q ss_pred EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS 138 (185)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 138 (185)
+++||+||++.+...+......+|++++|+|+++..........+..+ .... ..|+++++||+|+.+.......
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~g-----i~~iIVvvNK~Dl~~~~~~~~~ 155 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIG-----IKNIVIVQNKIDLVSKEKALEN 155 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcC-----CCeEEEEEEccccCCHHHHHHH
Confidence 899999999999888888888999999999999643111111222222 1111 2368999999999864222222
Q ss_pred HHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.+++..+.... ..++++++||++|+|+++++++|...++.
T Consensus 156 ~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 156 YEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPT 197 (406)
T ss_pred HHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCC
Confidence 34444444432 24789999999999999999999987663
No 195
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.88 E-value=4.3e-21 Score=150.52 Aligned_cols=158 Identities=22% Similarity=0.193 Sum_probs=109.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC---CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK---FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
-|.++|+.++|||||+++|++.. .......+++.+.....+...+ +..+.+||+||++.+.......+..+|++++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~-g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL 80 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPD-GRVLGFIDVPGHEKFLSNMLAGVGGIDHALL 80 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCC-CcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence 47899999999999999998643 2233334555444433333322 3457899999999998888888899999999
Q ss_pred EEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcC--CCcEEEeeec
Q 029929 87 VYDVNVM---KSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--NIPYFETSAK 160 (185)
Q Consensus 87 v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 160 (185)
|+|+++. .+.+.+ ..+ ... ++| +++|+||+|+.+........+++..+....+ ..+++++||+
T Consensus 81 VVda~eg~~~qT~ehl----~il-~~l------gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~ 149 (614)
T PRK10512 81 VVACDDGVMAQTREHL----AIL-QLT------GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAAT 149 (614)
T ss_pred EEECCCCCcHHHHHHH----HHH-HHc------CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCC
Confidence 9999873 333322 111 111 345 5799999999764323333445555554433 3789999999
Q ss_pred cCCCHHHHHHHHHHHHhhc
Q 029929 161 EGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~ 179 (185)
+|.|++++++.|.+...+.
T Consensus 150 tG~gI~~L~~~L~~~~~~~ 168 (614)
T PRK10512 150 EGRGIDALREHLLQLPERE 168 (614)
T ss_pred CCCCCHHHHHHHHHhhccc
Confidence 9999999999998765543
No 196
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.88 E-value=7.7e-21 Score=152.08 Aligned_cols=154 Identities=19% Similarity=0.222 Sum_probs=109.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc----------ccch
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF 77 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 77 (185)
.++|+++|.+|||||||+|++++........++.+.+..... +...+..+.++||||..++... ...+
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~--~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ--FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEE--EEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 478999999999999999999987765444455554443333 3445568899999997665421 1122
Q ss_pred h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 78 Y--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
+ ..+|++++|+|+++.+.. ..+..++.+. ++|+++++||+|+.+... ...+..++.+..+ ++++
T Consensus 81 l~~~~aD~vI~VvDat~ler~---l~l~~ql~e~-------giPvIvVlNK~Dl~~~~~---i~id~~~L~~~LG-~pVv 146 (772)
T PRK09554 81 ILSGDADLLINVVDASNLERN---LYLTLQLLEL-------GIPCIVALNMLDIAEKQN---IRIDIDALSARLG-CPVI 146 (772)
T ss_pred HhccCCCEEEEEecCCcchhh---HHHHHHHHHc-------CCCEEEEEEchhhhhccC---cHHHHHHHHHHhC-CCEE
Confidence 2 479999999999975432 2233333321 679999999999875421 2344556666666 8999
Q ss_pred EeeeccCCCHHHHHHHHHHHHh
Q 029929 156 ETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
++|+.+++|++++++.+.+...
T Consensus 147 piSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 147 PLVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred EEEeecCCCHHHHHHHHHHhhh
Confidence 9999999999999999987653
No 197
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.88 E-value=1.8e-20 Score=118.47 Aligned_cols=168 Identities=25% Similarity=0.343 Sum_probs=131.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC--CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-cccccchhccCc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-QSLGVAFYRGAD 82 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~d 82 (185)
.+.-+|+|.|..++|||++++.+.-.... ....+|++..+....-+-.+..-.+.++||.|.... ..+-.+|+.-+|
T Consensus 7 Gk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD 86 (198)
T KOG3883|consen 7 GKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD 86 (198)
T ss_pred CcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence 34579999999999999999998754433 445666654443333333344457899999996555 556678889999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
++++||+..+++||..+.-+-..+.+. .+...+|+++++||+|+.+. ++...+.+..++.+.. +..+++++.+.
T Consensus 87 afVLVYs~~d~eSf~rv~llKk~Idk~---KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk-vkl~eVta~dR 160 (198)
T KOG3883|consen 87 AFVLVYSPMDPESFQRVELLKKEIDKH---KDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK-VKLWEVTAMDR 160 (198)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHhhc---cccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh-eeEEEEEeccc
Confidence 999999999999999887666666543 34447899999999999865 7778888888888776 89999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
..+-+.|..+...+...
T Consensus 161 ~sL~epf~~l~~rl~~p 177 (198)
T KOG3883|consen 161 PSLYEPFTYLASRLHQP 177 (198)
T ss_pred hhhhhHHHHHHHhccCC
Confidence 99999999998877644
No 198
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.88 E-value=3.1e-21 Score=151.00 Aligned_cols=146 Identities=19% Similarity=0.243 Sum_probs=105.8
Q ss_pred cCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh--ccCcEEEE
Q 029929 15 GDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY--RGADCCVL 86 (185)
Q Consensus 15 G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~d~~i~ 86 (185)
|.+|+|||||+|++++........++.+.+.....+.+++ ..+++|||||+.++... ...++ +.+|++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~--~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~ 78 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG--EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN 78 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC--eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence 8999999999999998876666667777766666666654 45789999998766543 22232 47899999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|+++.+.. ..+..++.+ .+.|+++|+||+|+.+... . ..+.+.+.+..+ .+++++||++|+|++
T Consensus 79 VvDat~ler~---l~l~~ql~~-------~~~PiIIVlNK~Dl~~~~~--i-~~d~~~L~~~lg-~pvv~tSA~tg~Gi~ 144 (591)
T TIGR00437 79 VVDASNLERN---LYLTLQLLE-------LGIPMILALNLVDEAEKKG--I-RIDEEKLEERLG-VPVVPTSATEGRGIE 144 (591)
T ss_pred EecCCcchhh---HHHHHHHHh-------cCCCEEEEEehhHHHHhCC--C-hhhHHHHHHHcC-CCEEEEECCCCCCHH
Confidence 9999874322 222222221 1679999999999875421 2 234455566666 899999999999999
Q ss_pred HHHHHHHHHH
Q 029929 167 AAFECIAKNA 176 (185)
Q Consensus 167 ~~~~~i~~~~ 176 (185)
++++++.+..
T Consensus 145 eL~~~i~~~~ 154 (591)
T TIGR00437 145 RLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=5.1e-21 Score=141.25 Aligned_cols=152 Identities=19% Similarity=0.204 Sum_probs=110.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh---------cccccchh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVAFY 78 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~ 78 (185)
..|+++|.||+|||||+|+|++.... ....|+++.+..+......+. .+.++||+|.+.. .......+
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~--~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai 81 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGR--EFILIDTGGLDDGDEDELQELIREQALIAI 81 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCc--eEEEEECCCCCcCCchHHHHHHHHHHHHHH
Confidence 57999999999999999999998765 456777777777777776664 4788999994421 22334556
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
..||++|||+|+...-+.+. ......+. . .++|+++|+||+|-... .....++ .+++.-.++++|
T Consensus 82 ~eADvilfvVD~~~Git~~D-~~ia~~Lr----~---~~kpviLvvNK~D~~~~------e~~~~ef-yslG~g~~~~IS 146 (444)
T COG1160 82 EEADVILFVVDGREGITPAD-EEIAKILR----R---SKKPVILVVNKIDNLKA------EELAYEF-YSLGFGEPVPIS 146 (444)
T ss_pred HhCCEEEEEEeCCCCCCHHH-HHHHHHHH----h---cCCCEEEEEEcccCchh------hhhHHHH-HhcCCCCceEee
Confidence 88999999999987433332 11222221 1 16799999999996522 2233333 345557899999
Q ss_pred eccCCCHHHHHHHHHHHHh
Q 029929 159 AKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~ 177 (185)
|..|.|+.++++.+.+.++
T Consensus 147 A~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 147 AEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred hhhccCHHHHHHHHHhhcC
Confidence 9999999999999999984
No 200
>PRK10218 GTP-binding protein; Provisional
Probab=99.87 E-value=1.5e-20 Score=146.77 Aligned_cols=165 Identities=18% Similarity=0.224 Sum_probs=116.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC--CCCCC------------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~--~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (185)
...+|+++|+.++|||||+++|+.. .+... .....+.+.......+....+.+++|||||+.+|..
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~ 83 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGG 83 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHH
Confidence 3569999999999999999999863 22211 122344555555556666678999999999999999
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS---- 148 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~---- 148 (185)
.+..+++.+|++|+|+|+.+...... ..++..... .++|.++++||+|+....... ..+++..+...
T Consensus 84 ~v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~-------~gip~IVviNKiD~~~a~~~~-vl~ei~~l~~~l~~~ 154 (607)
T PRK10218 84 EVERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA-------YGLKPIVVINKVDRPGARPDW-VVDQVFDLFVNLDAT 154 (607)
T ss_pred HHHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH-------cCCCEEEEEECcCCCCCchhH-HHHHHHHHHhccCcc
Confidence 99999999999999999987432222 222232221 167999999999987543222 23333333322
Q ss_pred --cCCCcEEEeeeccCC----------CHHHHHHHHHHHHhhcC
Q 029929 149 --KGNIPYFETSAKEGF----------NVEAAFECIAKNALKNE 180 (185)
Q Consensus 149 --~~~~~~~~~s~~~~~----------~i~~~~~~i~~~~~~~~ 180 (185)
...+|++++||.+|. |+..+++.|...++...
T Consensus 155 ~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 155 DEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred ccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 123789999999998 68999999999887553
No 201
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.87 E-value=3.5e-21 Score=146.47 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=100.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------------------------CccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-------------------------------QYKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|++++|||||+++|+...... ...++++.+.. ...+..
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~--~~~~~~ 81 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLA--HKKFET 81 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceee--eEEEec
Confidence 456899999999999999999998432110 11233333333 334445
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 133 (185)
..+.+.+|||||+..+.......+..+|++++|+|++++..... ....+... .... ..|+++++||+|+....
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~~-----~~~iivviNK~Dl~~~~ 155 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLA-RTLG-----INQLIVAINKMDAVNYD 155 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHcC-----CCeEEEEEEcccccccc
Confidence 56789999999998887666666789999999999987311111 11111211 1111 23689999999997532
Q ss_pred c--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 134 S--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 134 ~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
. .....+++..+....+ .++++++||++|+|+.+
T Consensus 156 ~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 156 EKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 1 1223345555554443 36799999999999986
No 202
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.87 E-value=2.5e-20 Score=124.21 Aligned_cols=160 Identities=20% Similarity=0.172 Sum_probs=111.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (185)
....-|+++|..|+|||||||+|++++-..-...+.|.+.....+.+++. +.++|.|| .+.+..+..
T Consensus 22 ~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 22 DDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 34578999999999999999999997743334455555666667766653 67889999 344555566
Q ss_pred chhcc---CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929 76 AFYRG---ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150 (185)
Q Consensus 76 ~~~~~---~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (185)
.|++. -.++++++|+.++..-.. +-.|+.+. ++|+++++||+|.....++...............
T Consensus 99 ~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~----------~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~ 168 (200)
T COG0218 99 EYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLEL----------GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPP 168 (200)
T ss_pred HHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHc----------CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCC
Confidence 66643 568889999988544322 22333322 7899999999999876444333344443322222
Q ss_pred CCc--EEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 151 NIP--YFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 151 ~~~--~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.+. ++..|+..+.|++++...|.+.+..
T Consensus 169 ~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 169 PDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 233 8899999999999999999887754
No 203
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.87 E-value=9.9e-21 Score=133.12 Aligned_cols=161 Identities=19% Similarity=0.180 Sum_probs=107.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------c---cCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------Y---KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (185)
+|+++|+.|+|||||+++|+....... + ....+.+.......+.....++.+|||||+.++...
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 589999999999999999976421100 0 011122333333444445678999999999998888
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce------------------
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR------------------ 135 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~------------------ 135 (185)
+..+++.+|++++|+|+.+.... ....++..+.. .++|+++++||+|+...+..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~-------~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK-------LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPMQ 152 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH-------cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEEE
Confidence 88899999999999999875433 22344443322 16799999999998753200
Q ss_pred -------------------------------------eecHHHHHH----HHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 136 -------------------------------------VVSEKKAKA----WCASKGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 136 -------------------------------------~~~~~~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
+...+++.. -......+|++..||.++.|+..+++.|.+
T Consensus 153 ~p~~~~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~Gv~~ll~~~~~ 232 (237)
T cd04168 153 KVGLAPNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGIGIEELLEGITK 232 (237)
T ss_pred CCcEeeeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCcCHHHHHHHHHH
Confidence 001111111 111122457888899999999999999998
Q ss_pred HHhh
Q 029929 175 NALK 178 (185)
Q Consensus 175 ~~~~ 178 (185)
.++.
T Consensus 233 ~~p~ 236 (237)
T cd04168 233 LFPT 236 (237)
T ss_pred hcCC
Confidence 8763
No 204
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.87 E-value=7.6e-21 Score=148.52 Aligned_cols=163 Identities=18% Similarity=0.209 Sum_probs=112.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC--CCCC------------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK--FSNQ------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (185)
.+|+++|+.++|||||+++|+... +... .....+.+.......+...++.+++|||||+.+|...+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 489999999999999999998632 1111 01122334444444444456889999999999999889
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-----
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----- 149 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----- 149 (185)
..+++.+|++++|+|+.+.. ......++..... .++|+++|+||+|+.+..... ..+++..+....
T Consensus 82 ~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~-------~~ip~IVviNKiD~~~a~~~~-v~~ei~~l~~~~g~~~e 152 (594)
T TIGR01394 82 ERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE-------LGLKPIVVINKIDRPSARPDE-VVDEVFDLFAELGADDE 152 (594)
T ss_pred HHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH-------CCCCEEEEEECCCCCCcCHHH-HHHHHHHHHHhhccccc
Confidence 99999999999999998632 2222344444432 167999999999987542222 223333333211
Q ss_pred -CCCcEEEeeeccCC----------CHHHHHHHHHHHHhhcC
Q 029929 150 -GNIPYFETSAKEGF----------NVEAAFECIAKNALKNE 180 (185)
Q Consensus 150 -~~~~~~~~s~~~~~----------~i~~~~~~i~~~~~~~~ 180 (185)
..++++++||++|. |+..+++.|.+.++...
T Consensus 153 ~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 153 QLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 13689999999995 89999999999887553
No 205
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.86 E-value=3.6e-21 Score=146.39 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=103.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCC--C-----------------------------CCccCcceeeeEEEEEEEC
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF--S-----------------------------NQYKATIGADFLTKEVQFE 53 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~ 53 (185)
....++|+++|+.++|||||+.+|+.... . .....+.+.+... ..+.
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~--~~~~ 81 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAH--WKFE 81 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEE--EEEc
Confidence 44569999999999999999999975221 1 0112233344433 3444
Q ss_pred CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHH-HHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWRE-EFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
...+.+.+|||||++.+.......+..+|++++|+|+++.++....+.+.. .+..... ..|+++++||+|+.+.
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~-----~~~iIVviNK~Dl~~~ 156 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLG-----INQLIVAINKMDSVNY 156 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcC-----CCeEEEEEEChhccCc
Confidence 556789999999999887777777889999999999998743211111111 1121111 2378999999999753
Q ss_pred Cc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
.. .....+++..++...+ .++++++||++|.|+.+
T Consensus 157 ~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 157 DEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 21 2223455566665543 36899999999999986
No 206
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=1.9e-20 Score=138.28 Aligned_cols=162 Identities=23% Similarity=0.164 Sum_probs=119.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----------cc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----------LG 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----------~~ 74 (185)
.+++|+++|.||+|||||+|++.+.... ....++++.+.....+.+++. .+.++||+|...-.. ..
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~--~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGR--KYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCe--EEEEEECCCCCcccccccceEEEeehhh
Confidence 4699999999999999999999987754 456677777877778777765 456779999322111 12
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC--CceeecHHHHHHHHHhcCCC
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG--NSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~ 152 (185)
...+..+|++++|+|+..+-+-... +....+.+ . +.+++||+||.|+.+. ...+...+++.......+.+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~~----~---g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a 326 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL-RIAGLIEE----A---GRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFA 326 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH-HHHHHHHH----c---CCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCC
Confidence 3345789999999999986554442 22233322 2 6799999999999875 23344445555655666778
Q ss_pred cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 153 PYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++++||++|.++.++++.+.+....
T Consensus 327 ~i~~iSA~~~~~i~~l~~~i~~~~~~ 352 (444)
T COG1160 327 PIVFISALTGQGLDKLFEAIKEIYEC 352 (444)
T ss_pred eEEEEEecCCCChHHHHHHHHHHHHH
Confidence 99999999999999999998876654
No 207
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.4e-20 Score=146.95 Aligned_cols=159 Identities=24% Similarity=0.276 Sum_probs=102.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC------CcE-----E-----EEEEecCCChh
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE------DRL-----F-----TLQIWDTAGQE 68 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~-----~-----~~~~~D~~g~~ 68 (185)
+.++..|+++|+.++|||||++++.+...........+.+........+ +.. . .+++|||||++
T Consensus 3 ~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 3 KLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 3456789999999999999999998765443332222211111111110 110 1 26899999999
Q ss_pred hhcccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee---------
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV--------- 136 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~--------- 136 (185)
.|..++...++.+|++++|+|+++ +.+++.+.. +. . .++|+++++||+|+.......
T Consensus 83 ~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~----~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~ 151 (586)
T PRK04004 83 AFTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LK----R---RKTPFVVAANKIDRIPGWKSTEDAPFLESI 151 (586)
T ss_pred HHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HH----H---cCCCEEEEEECcCCchhhhhhcCchHHHHH
Confidence 999888888899999999999987 555544321 11 1 167999999999985321000
Q ss_pred -----ecHH-------HHHHHHHh--------------cCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 137 -----VSEK-------KAKAWCAS--------------KGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 137 -----~~~~-------~~~~~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
...+ ++...... .+..+++++||++|.|+.+++..+..
T Consensus 152 ~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 152 EKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 0000 01011111 13478999999999999999988764
No 208
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.86 E-value=7.1e-20 Score=119.56 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=117.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC--------CCccC--cceeeeEEEEEEECCcEEEEEEecCCChhhhcccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS--------NQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG 74 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~--------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 74 (185)
+.+..+|+|+|+.++||||+++++...... ..... .++.-.......+. ....+++++||||.+|..+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~-~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELD-EDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEc-CcceEEEecCCCcHHHHHHH
Confidence 456789999999999999999999877641 11111 12222222223333 33578899999999999999
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCc
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP 153 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (185)
....+.+.++|+++|.+.+..+ .....+..+. ... .+|++|++||.|+... ...+.+++..... -..+
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~----~~~--~ip~vVa~NK~DL~~a----~ppe~i~e~l~~~~~~~~ 154 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLT----SRN--PIPVVVAINKQDLFDA----LPPEKIREALKLELLSVP 154 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHh----hcc--CCCEEEEeeccccCCC----CCHHHHHHHHHhccCCCc
Confidence 9999999999999999998887 3333333332 221 2799999999999865 4566666665544 2489
Q ss_pred EEEeeeccCCCHHHHHHHHHHH
Q 029929 154 YFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+++.++.++++..+.++.+...
T Consensus 155 vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 155 VIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred eeeeecccchhHHHHHHHHHhh
Confidence 9999999999999999988876
No 209
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.86 E-value=4.6e-20 Score=147.82 Aligned_cols=155 Identities=21% Similarity=0.197 Sum_probs=104.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hcccccchh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQSLGVAFY 78 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~ 78 (185)
..+|+++|.+|+|||||+|+|++.... ....++.+.+.........+ ..+.+|||||... +......++
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 352 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIAV 352 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence 468999999999999999999987542 23345555444444444333 5788999999652 233344567
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
..+|++|+|+|+.+.-.... ..+...+.. .++|+++|+||+|+.... .....+. ..+....+++|
T Consensus 353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~-------~~~pvIlV~NK~D~~~~~------~~~~~~~-~lg~~~~~~iS 417 (712)
T PRK09518 353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR-------AGKPVVLAVNKIDDQASE------YDAAEFW-KLGLGEPYPIS 417 (712)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHh-------cCCCEEEEEECcccccch------hhHHHHH-HcCCCCeEEEE
Confidence 89999999999986322211 233333321 267999999999986421 1112221 12323568999
Q ss_pred eccCCCHHHHHHHHHHHHhhc
Q 029929 159 AKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|++|.|+.+++++|.+.++..
T Consensus 418 A~~g~GI~eLl~~i~~~l~~~ 438 (712)
T PRK09518 418 AMHGRGVGDLLDEALDSLKVA 438 (712)
T ss_pred CCCCCCchHHHHHHHHhcccc
Confidence 999999999999999988653
No 210
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.86 E-value=3.2e-20 Score=130.39 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=102.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccccchhccCc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFYRGAD 82 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 82 (185)
+|+++|.+|+|||||+++|++........+.++.+.....+.+.+ ..+++||+||..... ......++.+|
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad 79 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD 79 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence 689999999999999999998765444445555555555555544 578899999964322 12345678999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHH----------------------------------------HHhhcC----------
Q 029929 83 CCVLVYDVNVMK-SFDNLNNWREE----------------------------------------FLIQAS---------- 111 (185)
Q Consensus 83 ~~i~v~d~~~~~-~~~~~~~~~~~----------------------------------------~~~~~~---------- 111 (185)
++++|+|+++++ ..+.+...+.. ++....
T Consensus 80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~ 159 (233)
T cd01896 80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE 159 (233)
T ss_pred EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence 999999998754 22222222211 000000
Q ss_pred -----------CCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 112 -----------PSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 112 -----------~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
......+|+++|+||+|+... ++...++. ..+++++||+++.|++++++.|.+.+
T Consensus 160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~~~---~~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLLAR---QPNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred CCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHHhc---CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 011123589999999998642 22223332 24689999999999999999998865
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.86 E-value=7.7e-21 Score=131.68 Aligned_cols=150 Identities=21% Similarity=0.138 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-------------------------------ccCcceeeeEEEEEEECCcEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-------------------------------YKATIGADFLTKEVQFEDRLFT 58 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 58 (185)
||+++|++|+|||||+++|+....... ..+..+.+.....+ ......
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~--~~~~~~ 78 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYF--STPKRK 78 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEE--ecCCce
Confidence 689999999999999999975432111 11223333333333 334457
Q ss_pred EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce--e
Q 029929 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--V 136 (185)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~ 136 (185)
+.+|||||+..+.......++.+|++++|+|+++...... ......+ .... ..++++|+||+|+...... .
T Consensus 79 ~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~-~~~~~~~-~~~~-----~~~iIvviNK~D~~~~~~~~~~ 151 (208)
T cd04166 79 FIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT-RRHSYIL-SLLG-----IRHVVVAVNKMDLVDYSEEVFE 151 (208)
T ss_pred EEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH-HHHHHHH-HHcC-----CCcEEEEEEchhcccCCHHHHH
Confidence 8899999998877666777899999999999987532221 1111111 1111 1257889999999753211 1
Q ss_pred ecHHHHHHHHHhcC--CCcEEEeeeccCCCHHHH
Q 029929 137 VSEKKAKAWCASKG--NIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 137 ~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~~ 168 (185)
....++..+....+ ..+++++||++|.|+.+.
T Consensus 152 ~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 152 EIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 12334444444444 356999999999998753
No 212
>COG2262 HflX GTPases [General function prediction only]
Probab=99.86 E-value=5.5e-20 Score=134.01 Aligned_cols=160 Identities=19% Similarity=0.145 Sum_probs=120.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC---------hhhhcccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG---------QERFQSLGVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---------~~~~~~~~~~ 76 (185)
...+.|.++|.+|+|||||+|++++.........+.+.+++...+.+.+ +..+.+.||.| .+.|.+.. .
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTL-E 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTL-E 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHH-H
Confidence 4568999999999999999999998887777778888899888888876 34677889999 22333332 2
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
....+|+++.|+|+++|+..+.+.....-+. ..+....|+|+|.||+|+..... ......... ...+.
T Consensus 268 E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~----el~~~~~p~i~v~NKiD~~~~~~-------~~~~~~~~~-~~~v~ 335 (411)
T COG2262 268 EVKEADLLLHVVDASDPEILEKLEAVEDVLA----EIGADEIPIILVLNKIDLLEDEE-------ILAELERGS-PNPVF 335 (411)
T ss_pred HhhcCCEEEEEeecCChhHHHHHHHHHHHHH----HcCCCCCCEEEEEecccccCchh-------hhhhhhhcC-CCeEE
Confidence 3467999999999999976666655444443 33333689999999999876422 111122222 15899
Q ss_pred eeeccCCCHHHHHHHHHHHHhhc
Q 029929 157 TSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+||++|.|++.+.+.|.+.+...
T Consensus 336 iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 336 ISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred EEeccCcCHHHHHHHHHHHhhhc
Confidence 99999999999999999988754
No 213
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.86 E-value=4.3e-20 Score=136.73 Aligned_cols=154 Identities=25% Similarity=0.274 Sum_probs=112.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~ 77 (185)
.-++++++|.||+|||||+|+|.+.+.. ....++++.+.....+.+++ +.+.+.||+|..+.... ....
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 3489999999999999999999998765 45677777787777777666 67788899995443332 2345
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+..||.+++|+|++.+.+-.... .+. ....+.|+++|.||.|+....... .. ......+++.+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~--------~~~~~~~~i~v~NK~DL~~~~~~~----~~----~~~~~~~~i~i 356 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE--------LLPKKKPIIVVLNKADLVSKIELE----SE----KLANGDAIISI 356 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH--------hcccCCCEEEEEechhcccccccc----hh----hccCCCceEEE
Confidence 67899999999999863322211 111 112267999999999998753211 11 22233579999
Q ss_pred eeccCCCHHHHHHHHHHHHhhc
Q 029929 158 SAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|+++++|++.+.+.|.+.+...
T Consensus 357 Sa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 357 SAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EecCccCHHHHHHHHHHHHhhc
Confidence 9999999999999999988766
No 214
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.86 E-value=4.4e-20 Score=129.50 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=111.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh------------hhcc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------------RFQS 72 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------------~~~~ 72 (185)
..+.++|+|+|+||+|||||.|.+.+.+..+......++.....-+ +.....++.|+||||.- .+..
T Consensus 69 ~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi-~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 69 AQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGI-ITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred cceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEE-EecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3567999999999999999999999999886655555444433333 33345699999999911 1111
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----------eeecHHH
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----------RVVSEKK 141 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----------~~~~~~~ 141 (185)
.-...+..+|++++++|+++....-. ...++.+.... ++|-++|.||.|...... .+... .
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys------~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~-~ 219 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYS------KIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAK-L 219 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHh------cCCceeeccchhcchhhhHHhhhHHhccccccch-h
Confidence 23445678999999999996322211 12223222221 668899999999754310 01110 0
Q ss_pred HHHHHHhcCC----------------CcEEEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 142 AKAWCASKGN----------------IPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 142 ~~~~~~~~~~----------------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
..++.+.... -.+|.+||++|+|++++.++|...++...+.+
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y 277 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKY 277 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCC
Confidence 1111111111 23899999999999999999999998887654
No 215
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=118.19 Aligned_cols=168 Identities=22% Similarity=0.405 Sum_probs=138.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
-.++|.++|.+..|||||+-...+..+.+.+..+.+..+..+.+.+.+....+.+||.+|++++..+......++-++++
T Consensus 19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 35899999999999999999999988888888888999988999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
++|.+.+.++..+..|+++....-. .- --|+|++|.|+.-.- -......+.+.+++..+ ++.++||+....
T Consensus 99 mFDLt~r~TLnSi~~WY~QAr~~Nk----tA-iPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mn-AsL~F~Sts~sI 172 (205)
T KOG1673|consen 99 MFDLTRRSTLNSIKEWYRQARGLNK----TA-IPILVGTKYDLFIDLPPELQETISRQARKYAKVMN-ASLFFCSTSHSI 172 (205)
T ss_pred EEecCchHHHHHHHHHHHHHhccCC----cc-ceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhC-CcEEEeeccccc
Confidence 9999999999999999998754321 12 236789999975321 12223334555666665 899999999999
Q ss_pred CHHHHHHHHHHHHhhcC
Q 029929 164 NVEAAFECIAKNALKNE 180 (185)
Q Consensus 164 ~i~~~~~~i~~~~~~~~ 180 (185)
++..+|..+..++.+-.
T Consensus 173 Nv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFNLP 189 (205)
T ss_pred cHHHHHHHHHHHHhCCc
Confidence 99999999988876543
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.85 E-value=4.8e-20 Score=138.69 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=109.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|+.++|||||+++|++.... ....... +.......+......+.++||||+.+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~--T~~~~~~~~~~~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGI--TINTAHVEYETEKRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCc--cEEEEeeEecCCCcEEEEEECCCHHH
Confidence 45699999999999999999999863110 1112233 33334444555556889999999998
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCce-eecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~ 147 (185)
+.......+..+|++++|+|+........ ...+..+... ++| +++++||+|+.+.... +...+++..+..
T Consensus 88 f~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~~-------g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~ 159 (394)
T PRK12736 88 YVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQV-------GVPYLVVFLNKVDLVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHHc-------CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 88777777889999999999986322221 1222222211 567 6788999999753221 112335555554
Q ss_pred hcC----CCcEEEeeeccCC--------CHHHHHHHHHHHHhh
Q 029929 148 SKG----NIPYFETSAKEGF--------NVEAAFECIAKNALK 178 (185)
Q Consensus 148 ~~~----~~~~~~~s~~~~~--------~i~~~~~~i~~~~~~ 178 (185)
..+ .++++++||++|. ++.++++.|.+.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~ 202 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPT 202 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCC
Confidence 443 3689999999983 678888888887763
No 217
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-21 Score=122.20 Aligned_cols=165 Identities=20% Similarity=0.268 Sum_probs=119.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
+..+++++|..|+||||++.++.-.... ...|+.+.......+ ++.++.+||.+|+...+-.|..|+.+.|++||
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 5689999999999999999888765543 335666655443333 56789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|.+|.+........ +..++.+....+..+++++||.|....-.+.+-...+.-.......+.++..||.+|.|++
T Consensus 92 VVDssd~dris~a~~e---l~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld 168 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVE---LYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLD 168 (182)
T ss_pred EEeccchhhhhhhHHH---HHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCc
Confidence 9999998776655432 2333344444566788999999987532111111111111112223789999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
+..+|+.+-+..+
T Consensus 169 ~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 169 PAMDWLQRPLKSR 181 (182)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887654
No 218
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.85 E-value=7e-21 Score=132.83 Aligned_cols=149 Identities=18% Similarity=0.180 Sum_probs=93.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEECCcEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFEDRLFT 58 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (185)
+|+++|+.++|||||+.+|+..... ......++.+. ....+......
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~--~~~~~~~~~~~ 78 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDV--GLAKFETEKYR 78 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeec--ceEEEeeCCeE
Confidence 5899999999999999998632110 01111222233 33333345578
Q ss_pred EEEecCCChhhhcccccchhccCcEEEEEEECCChhh------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS------FDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
+.+|||||+..+.......++.+|++|+|+|+++... ........... .. .. ..|+++++||+|+...
T Consensus 79 i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~---~~--~~~iiivvNK~Dl~~~ 152 (219)
T cd01883 79 FTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RT---LG--VKQLIVAVNKMDDVTV 152 (219)
T ss_pred EEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HH---cC--CCeEEEEEEccccccc
Confidence 9999999998887777777888999999999987421 01111111111 11 11 2478999999999842
Q ss_pred C----ceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHH
Q 029929 133 N----SRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVE 166 (185)
Q Consensus 133 ~----~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~ 166 (185)
. ......+++..+....+ .++++++||++|.|+.
T Consensus 153 ~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 153 NWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred cccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 1 11222333333344432 3789999999999986
No 219
>PRK12735 elongation factor Tu; Reviewed
Probab=99.85 E-value=6.5e-20 Score=138.08 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=107.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|+.++|||||+++|++... ........+.+ .....+.....++.|+||||+..
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~--~~~~~~~~~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITIN--TSHVEYETANRHYAHVDCPGHAD 87 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEE--EeeeEEcCCCcEEEEEECCCHHH
Confidence 4569999999999999999999986210 01112233333 33444444556789999999998
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (185)
+.......+..+|++++|+|+........ ...+..+. . .++|.+ +++||+|+..... .+...+++..+..
T Consensus 88 f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~----~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~ 159 (396)
T PRK12735 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR----Q---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH----H---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHH
Confidence 88777788889999999999986322221 22222221 1 156765 5799999975321 1222335555555
Q ss_pred hcC----CCcEEEeeeccCC----------CHHHHHHHHHHHHh
Q 029929 148 SKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL 177 (185)
Q Consensus 148 ~~~----~~~~~~~s~~~~~----------~i~~~~~~i~~~~~ 177 (185)
..+ .++++++||.+|. ++.++++.|...++
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 543 3789999999984 67888888887665
No 220
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.85 E-value=5.8e-20 Score=129.45 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccc---hhccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~ 81 (185)
-.|.++|.||+|||||++++...+......++++..+....+.+++.. ++++-|.||.-+ ...+-.. .+..|
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~-q~tVADiPGiI~GAh~nkGlG~~FLrHiER~ 275 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS-QITVADIPGIIEGAHMNKGLGYKFLRHIERC 275 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc-eeEeccCccccccccccCcccHHHHHHHHhh
Confidence 467899999999999999999998877778888888887777776644 588999999221 2222233 34679
Q ss_pred cEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 82 DCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 82 d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
+.++||+|++.+ +.++.++.+..++..+-. ...+.|.+||+||+|+.+. ....+.++...+....++++|
T Consensus 276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek--~L~~rp~liVaNKiD~~ea-----e~~~l~~L~~~lq~~~V~pvs 348 (366)
T KOG1489|consen 276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEK--GLADRPALIVANKIDLPEA-----EKNLLSSLAKRLQNPHVVPVS 348 (366)
T ss_pred ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhh--hhccCceEEEEeccCchhH-----HHHHHHHHHHHcCCCcEEEee
Confidence 999999999998 777777766666654422 2336699999999998632 233356777777655699999
Q ss_pred eccCCCHHHHHHHHHHH
Q 029929 159 AKEGFNVEAAFECIAKN 175 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~ 175 (185)
|+.++|+.++++.|.+.
T Consensus 349 A~~~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 349 AKSGEGLEELLNGLREL 365 (366)
T ss_pred eccccchHHHHHHHhhc
Confidence 99999999999988653
No 221
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=123.08 Aligned_cols=164 Identities=28% Similarity=0.593 Sum_probs=138.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++++++|..|.||||+.++.....+...+.++.+..........+...+.+..|||.|++.+......++-++.++|+
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 46999999999999999999999999999999999988877777655566899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
++|+...-+..+..+|.+.+.+.+. ++|+++++||.|..... . ......+.... ++.++++|++.+.+.+
T Consensus 89 mFdVtsr~t~~n~~rwhrd~~rv~~-----NiPiv~cGNKvDi~~r~---~-k~k~v~~~rkk-nl~y~~iSaksn~Nfe 158 (216)
T KOG0096|consen 89 MFDVTSRFTYKNVPRWHRDLVRVRE-----NIPIVLCGNKVDIKARK---V-KAKPVSFHRKK-NLQYYEISAKSNYNFE 158 (216)
T ss_pred EeeeeehhhhhcchHHHHHHHHHhc-----CCCeeeeccceeccccc---c-ccccceeeecc-cceeEEeecccccccc
Confidence 9999999999999999999887765 78999999999987642 1 11111111222 4789999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
.-|.|+.+.+....
T Consensus 159 kPFl~LarKl~G~p 172 (216)
T KOG0096|consen 159 RPFLWLARKLTGDP 172 (216)
T ss_pred cchHHHhhhhcCCC
Confidence 99999999876543
No 222
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.85 E-value=3.4e-20 Score=129.27 Aligned_cols=157 Identities=20% Similarity=0.188 Sum_probs=99.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccC--------------c---------ceeeeEEEE-------------EEEC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKA--------------T---------IGADFLTKE-------------VQFE 53 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~--------------~---------~~~~~~~~~-------------~~~~ 53 (185)
+|+++|+.++|||||+.++....+...... + .+.+..... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 589999999999999999987554321110 0 000100000 0011
Q ss_pred CcEEEEEEecCCChhhhcccccchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.....++++||||+..+.......+. .+|++++|+|+........ ..++..+.. . ++|+++|+||+|+.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~----~---~ip~ivvvNK~D~~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA----L---NIPVFVVVTKIDLAP 152 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH----c---CCCEEEEEECccccC
Confidence 22457889999999888766555554 6899999999986433222 222232221 1 679999999999876
Q ss_pred CCceeecHHHHHHHHHh-------------------------cCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 132 GNSRVVSEKKAKAWCAS-------------------------KGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
........+.+..+... ....|++.+|+.+|+|+++++..|..
T Consensus 153 ~~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 153 ANILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred HHHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 43333334444444331 11358999999999999999987754
No 223
>CHL00071 tufA elongation factor Tu
Probab=99.84 E-value=1.9e-19 Score=136.04 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=98.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|++++|||||+++|++.... ....++.+.+ .....+.....++.++||||+..
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~--~~~~~~~~~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEE--ccEEEEccCCeEEEEEECCChHH
Confidence 45699999999999999999999864211 1112233333 33334444556788999999998
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (185)
+.......+..+|++++|+|+........ ...+..+.. . ++| +|+++||+|+.+... .+...+++..+..
T Consensus 88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~----~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~ 159 (409)
T CHL00071 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ----V---GVPNIVVFLNKEDQVDDEELLELVELEVRELLS 159 (409)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH----c---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999986422221 222222211 1 568 678999999976322 1223345556655
Q ss_pred hcC----CCcEEEeeeccCC
Q 029929 148 SKG----NIPYFETSAKEGF 163 (185)
Q Consensus 148 ~~~----~~~~~~~s~~~~~ 163 (185)
..+ .++++++||.+|.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~ 179 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLAL 179 (409)
T ss_pred HhCCCCCcceEEEcchhhcc
Confidence 543 3789999999886
No 224
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.84 E-value=1.3e-19 Score=136.45 Aligned_cols=148 Identities=16% Similarity=0.122 Sum_probs=97.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|+.++|||||+++|++... ........+.+ .....+......+.+|||||+..
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~--~~~~~~~~~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITIN--TAHVEYETENRHYAHVDCPGHAD 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCccee--eEEEEEcCCCEEEEEEECCchHH
Confidence 4569999999999999999999973210 01112333333 34445555667889999999998
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (185)
|..........+|++++|+|+........ ...+..+... ++|.+ +++||+|+.+... .+...+++..++.
T Consensus 88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~ 159 (394)
T TIGR00485 88 YVKNMITGAAQMDGAILVVSATDGPMPQT-REHILLARQV-------GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 88777777788999999999987322221 1222222111 55655 6899999975321 1112345666666
Q ss_pred hcCC----CcEEEeeeccCC
Q 029929 148 SKGN----IPYFETSAKEGF 163 (185)
Q Consensus 148 ~~~~----~~~~~~s~~~~~ 163 (185)
..+. ++++++||.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 5542 789999999875
No 225
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.83 E-value=4.2e-19 Score=126.86 Aligned_cols=115 Identities=22% Similarity=0.233 Sum_probs=79.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc---------C-----------cceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK---------A-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (185)
.+|+++|++|+|||||+++|+......... . ..+.+.......+......+.+|||||+.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~ 82 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE 82 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence 589999999999999999997532110000 0 11233444445556667899999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
++.......++.+|++|+|+|+++.... ....++... .. .++|+++++||+|+..
T Consensus 83 df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~----~~---~~~P~iivvNK~D~~~ 137 (267)
T cd04169 83 DFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVC----RL---RGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHH----Hh---cCCCEEEEEECCccCC
Confidence 8887777788999999999999874322 122333322 11 2679999999999754
No 226
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.2e-19 Score=138.27 Aligned_cols=157 Identities=19% Similarity=0.219 Sum_probs=115.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchh--c
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFY--R 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~--~ 79 (185)
..+|+++|.||+|||||+|++++........|+.+.+.....+.+.+. .++++|+||-..+. .....++ .
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~--~i~ivDLPG~YSL~~~S~DE~Var~~ll~~ 80 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGH--EIEIVDLPGTYSLTAYSEDEKVARDFLLEG 80 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCc--eEEEEeCCCcCCCCCCCchHHHHHHHHhcC
Confidence 357999999999999999999999988777888887777777776664 47788999932221 1222333 4
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
..|+++-|+|++|-+.-- .+.-++.+. +.|++++.|++|.........+. +++.+.++ +|+++++|
T Consensus 81 ~~D~ivnVvDAtnLeRnL---yltlQLlE~-------g~p~ilaLNm~D~A~~~Gi~ID~---~~L~~~LG-vPVv~tvA 146 (653)
T COG0370 81 KPDLIVNVVDATNLERNL---YLTLQLLEL-------GIPMILALNMIDEAKKRGIRIDI---EKLSKLLG-VPVVPTVA 146 (653)
T ss_pred CCCEEEEEcccchHHHHH---HHHHHHHHc-------CCCeEEEeccHhhHHhcCCcccH---HHHHHHhC-CCEEEEEe
Confidence 679999999999744322 222233322 77999999999998754444444 44445566 99999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcC
Q 029929 160 KEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~ 180 (185)
++|.|++++++.+.+....+.
T Consensus 147 ~~g~G~~~l~~~i~~~~~~~~ 167 (653)
T COG0370 147 KRGEGLEELKRAIIELAESKT 167 (653)
T ss_pred ecCCCHHHHHHHHHHhccccc
Confidence 999999999999988666554
No 227
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=4.5e-19 Score=133.07 Aligned_cols=161 Identities=21% Similarity=0.238 Sum_probs=120.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
.+++=|+++|+-..|||||+..+-+...........+....-..+..+. ....++|+|||||+.|..++.....-+|++
T Consensus 3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIa 82 (509)
T COG0532 3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIA 82 (509)
T ss_pred CCCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEE
Confidence 3557799999999999999999998888777666776666666666542 345889999999999999999999999999
Q ss_pred EEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH--HH-HhcCCCcEEEee
Q 029929 85 VLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WC-ASKGNIPYFETS 158 (185)
Q Consensus 85 i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~s 158 (185)
|||+|+++ |.+.+.+... +. .++|+++++||+|.++.+......+.... .. .+-+...++++|
T Consensus 83 ILVVa~dDGv~pQTiEAI~ha-k~----------a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvS 151 (509)
T COG0532 83 ILVVAADDGVMPQTIEAINHA-KA----------AGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVS 151 (509)
T ss_pred EEEEEccCCcchhHHHHHHHH-HH----------CCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEee
Confidence 99999998 4554443221 11 28899999999999865433332222211 00 112346899999
Q ss_pred eccCCCHHHHHHHHHHHHh
Q 029929 159 AKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~ 177 (185)
|++|+|+.+|+..+.-...
T Consensus 152 A~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 152 AKTGEGIDELLELILLLAE 170 (509)
T ss_pred ccCCCCHHHHHHHHHHHHH
Confidence 9999999999998876543
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.82 E-value=5.5e-19 Score=121.43 Aligned_cols=161 Identities=17% Similarity=0.236 Sum_probs=96.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcce---eeeEEEEEEECCcEEEEEEecCCChhhhcccc-----cchhc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIG---ADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG-----VAFYR 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----~~~~~ 79 (185)
+++|+++|.+|+|||||+|++++...........+ .+.....+... ....+.+|||||........ ...+.
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 47999999999999999999998654322111111 11111111111 12368999999965322222 22256
Q ss_pred cCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc---------eeecHHHHHHHHH--
Q 029929 80 GADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS---------RVVSEKKAKAWCA-- 147 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~---------~~~~~~~~~~~~~-- 147 (185)
.+|+++++.+.. +... ..++..+... +.|+++|+||+|+..... ++...+.+++.+.
T Consensus 80 ~~d~~l~v~~~~----~~~~d~~~~~~l~~~-------~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~ 148 (197)
T cd04104 80 EYDFFIIISSTR----FSSNDVKLAKAIQCM-------GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLEN 148 (197)
T ss_pred CcCEEEEEeCCC----CCHHHHHHHHHHHHh-------CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHH
Confidence 789988875432 2222 2344444332 468999999999854221 1112222222222
Q ss_pred --h--cCCCcEEEeeec--cCCCHHHHHHHHHHHHhhcC
Q 029929 148 --S--KGNIPYFETSAK--EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 148 --~--~~~~~~~~~s~~--~~~~i~~~~~~i~~~~~~~~ 180 (185)
. ....+++.+|+. .+.++..+.+.|...++..+
T Consensus 149 ~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 149 LQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 1 223578999998 67999999999999998754
No 229
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.82 E-value=5.5e-20 Score=139.79 Aligned_cols=162 Identities=17% Similarity=0.202 Sum_probs=103.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-----------------------------CccCcceeeeEEEEEEECCc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-----------------------------QYKATIGADFLTKEVQFEDR 55 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 55 (185)
....++|+++|+.++|||||+.+|+...... ......+.+.......+...
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~ 83 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT 83 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence 3456899999999999999999886321100 00011223333444455666
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCC--
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGG-- 132 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~-- 132 (185)
.+.++++|+||+.+|.......+..+|++|+|+|+.+. .++....|..+..+++......++| +++++||+|+...
T Consensus 84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~ 162 (447)
T PLN00043 84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162 (447)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhh
Confidence 78899999999999999999999999999999999862 2221000001111111111111554 6889999998631
Q ss_pred --CceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 133 --NSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 133 --~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
.......+++..++...+ .++++++||.+|+|+.+
T Consensus 163 ~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 163 SKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 112233556666666554 47899999999999853
No 230
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.82 E-value=3.5e-19 Score=123.92 Aligned_cols=113 Identities=25% Similarity=0.289 Sum_probs=78.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------------cCcceeeeE--EEEEEE---CCcEEEEEEecCCCh
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQY-----------------KATIGADFL--TKEVQF---EDRLFTLQIWDTAGQ 67 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~-----------------~~~~~~~~~--~~~~~~---~~~~~~~~~~D~~g~ 67 (185)
+|+++|+.++|||||+++|+........ ....+.+.. ...+.+ ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875433210 001111211 111211 345688999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
.++......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+.
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~-------~~~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL-------EGLPIVLVINKIDRL 136 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH-------cCCCEEEEEECcccC
Confidence 9988888888999999999999987655433 233332221 157999999999986
No 231
>PRK00049 elongation factor Tu; Reviewed
Probab=99.82 E-value=1.1e-18 Score=131.35 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=106.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|+.++|||||+++|+..... ....+..+.+ .....+.....++.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~--~~~~~~~~~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITIN--TAHVEYETEKRHYAHVDCPGHAD 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEe--eeEEEEcCCCeEEEEEECCCHHH
Confidence 45689999999999999999999863110 1112233333 33444544556888999999988
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE-EEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV-VLGNKTDVDGGNS-RVVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (185)
+.......+..+|++++|+|+........ ...+..+.. . ++|.+ +++||+|+.+... .+....++..+..
T Consensus 88 f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~----~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~ 159 (396)
T PRK00049 88 YVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ----V---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLS 159 (396)
T ss_pred HHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH----c---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHH
Confidence 88777778899999999999986432221 222222221 1 56876 5899999975321 1122334555554
Q ss_pred hcC----CCcEEEeeeccCC----------CHHHHHHHHHHHHh
Q 029929 148 SKG----NIPYFETSAKEGF----------NVEAAFECIAKNAL 177 (185)
Q Consensus 148 ~~~----~~~~~~~s~~~~~----------~i~~~~~~i~~~~~ 177 (185)
..+ .++++++||.++. ++..+++.|...++
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 432 4789999999875 56777777777654
No 232
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.82 E-value=1.4e-21 Score=127.32 Aligned_cols=174 Identities=34% Similarity=0.598 Sum_probs=149.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE-EEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL-FTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
...++++|+|..|+|||+++.+.....+...+..+++.++..+...-+... +.+.+||..||+.+..+..-+++.+++.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~ 102 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGA 102 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcce
Confidence 345899999999999999999999888888888888888877766655543 4678999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
.+|||++..-+|+....|.+.+...+.......+|+++..||||..... ..........+....+....+++|++.+.+
T Consensus 103 ~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a-~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 103 FIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSA-KNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred EEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHh-hhhhHHHHHHHHhccCccceeeeccccccC
Confidence 9999999999999999999998888777777778999999999987542 223345677777888878899999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+.|+-+.+++++.-+.
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999988654
No 233
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.81 E-value=1.1e-18 Score=124.91 Aligned_cols=112 Identities=19% Similarity=0.121 Sum_probs=76.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC------------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
+|+++|++|+|||||+++|+..... .......+.+.....+. ....++.++||||+.++.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~--~~~~~i~liDTPG~~df~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCF--WKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEE--ECCEEEEEEECCCcHHHH
Confidence 5899999999999999999742211 11122222333333333 345788999999998888
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
..+..+++.+|++++|+|+.+...... ...+.... . .++|+++++||+|+.+
T Consensus 79 ~~~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~----~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 79 IEVERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQAD----R---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHH----H---cCCCEEEEEECCCCCC
Confidence 888889999999999999987432221 22222222 1 1679999999999864
No 234
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.81 E-value=1.4e-18 Score=124.78 Aligned_cols=115 Identities=21% Similarity=0.202 Sum_probs=76.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCcc-----Cc-----------ceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYK-----AT-----------IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (185)
+|+++|++|+|||||+++++......... .+ .+.........+....+.+++|||||+..+...
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 58999999999999999987533211000 00 011111222222334468899999999888878
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
...+++.+|++++|+|+++....... ..+..+. . .++|.++++||+|+...
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~~~~~----~---~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTE-KLWEFAD----E---AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHH----H---cCCCEEEEEECCccCCC
Confidence 88889999999999999875444322 2222221 1 16799999999997643
No 235
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.81 E-value=6.4e-19 Score=133.79 Aligned_cols=168 Identities=13% Similarity=0.133 Sum_probs=109.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEE---------------EEC-------------
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEV---------------QFE------------- 53 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~------------- 53 (185)
+...++|.++|+...|||||+.+|++.... .......+.+...... .+.
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 356689999999999999999999864321 1112222211111000 000
Q ss_pred ---CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 54 ---DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 54 ---~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.....+.|+|+||++.+.......+..+|++++|+|+... ..... ...+. +..... -.++++++||+|+
T Consensus 111 ~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT-~ehl~-i~~~lg-----i~~iIVvlNKiDl 183 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQT-SEHLA-AVEIMK-----LKHIIILQNKIDL 183 (460)
T ss_pred ccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhh-HHHHH-HHHHcC-----CCcEEEEEecccc
Confidence 0124688999999999988888888999999999999863 12211 12111 111111 1268999999999
Q ss_pred CCCCceeecHHHHHHHHHh--cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 130 DGGNSRVVSEKKAKAWCAS--KGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
.+........+++..+... ...++++++||++|.|++.|++.|.+.++..
T Consensus 184 v~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 184 VKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 8643233334445554432 1347999999999999999999999877644
No 236
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=4e-18 Score=121.01 Aligned_cols=162 Identities=20% Similarity=0.184 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh-----hhhcc-ccc--ch
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-----ERFQS-LGV--AF 77 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----~~~~~-~~~--~~ 77 (185)
...+.|+|.|.||+|||||+++++..+....+.|+++-......+...+ ..++++||||. ++... ..+ ..
T Consensus 166 p~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~--~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 166 PDLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGY--LRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCC--ceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 3457899999999999999999999998888889988888777776554 57778899991 11111 111 12
Q ss_pred h-ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 78 Y-RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 78 ~-~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+ +-.++++|++|.+... +.+.-..++.++...+ +.|+++|+||+|+... ...+++......-+....
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f------~~p~v~V~nK~D~~~~----e~~~~~~~~~~~~~~~~~ 313 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF------KAPIVVVINKIDIADE----EKLEEIEASVLEEGGEEP 313 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc------CCCeEEEEecccccch----hHHHHHHHHHHhhccccc
Confidence 2 3478999999998633 3344445666665554 4599999999999854 223334433444443557
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
..+++..+.+.+.+...+.....+.
T Consensus 314 ~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 314 LKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred cceeeeehhhHHHHHHHHHHHhhch
Confidence 8899999999998888887775443
No 237
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=3.2e-18 Score=128.35 Aligned_cols=166 Identities=19% Similarity=0.204 Sum_probs=123.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC---------------CCccCcceeeeEEEEEE-ECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---------------NQYKATIGADFLTKEVQ-FEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~g~~~ 69 (185)
.+.-|+.++-+-..|||||..+|+..... -....+++.......+. .++..+.++++|||||.+
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45678999999999999999998753321 11223333333222222 235678999999999999
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (185)
|.......+.-||++|+|+|++..-.......++..+.. +..+|.|+||+|++..+...+ ..++.+.....
T Consensus 138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~--------~L~iIpVlNKIDlp~adpe~V-~~q~~~lF~~~ 208 (650)
T KOG0462|consen 138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA--------GLAIIPVLNKIDLPSADPERV-ENQLFELFDIP 208 (650)
T ss_pred ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc--------CCeEEEeeeccCCCCCCHHHH-HHHHHHHhcCC
Confidence 999999999999999999999986666666666666542 567999999999998743333 23333333333
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
..+++.+||++|-|++++++.|++.+++...
T Consensus 209 -~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 209 -PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred -ccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 3689999999999999999999999987654
No 238
>PLN03126 Elongation factor Tu; Provisional
Probab=99.80 E-value=2.9e-18 Score=131.03 Aligned_cols=149 Identities=17% Similarity=0.112 Sum_probs=98.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCC----------------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF----------------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (185)
....++|+++|+.++|||||+++|+.... ........+ .......+......++++|+||+.
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiT--i~~~~~~~~~~~~~i~liDtPGh~ 155 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGIT--INTATVEYETENRHYAHVDCPGHA 155 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCee--EEEEEEEEecCCcEEEEEECCCHH
Confidence 34569999999999999999999985211 111222233 333333333445688999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHH
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWC 146 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~ 146 (185)
.+.......+..+|++++|+|+........ ..++..+... ++| +++++||+|+.+... .+...+++..+.
T Consensus 156 ~f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~~-------gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l 227 (478)
T PLN03126 156 DYVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQV-------GVPNMVVFLNKQDQVDDEELLELVELEVRELL 227 (478)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCeEEEEEecccccCHHHHHHHHHHHHHHHH
Confidence 998888888899999999999986433222 2222222211 567 778999999976321 122233555555
Q ss_pred Hhc----CCCcEEEeeeccCC
Q 029929 147 ASK----GNIPYFETSAKEGF 163 (185)
Q Consensus 147 ~~~----~~~~~~~~s~~~~~ 163 (185)
... ..++++++|+.++.
T Consensus 228 ~~~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 228 SSYEFPGDDIPIISGSALLAL 248 (478)
T ss_pred HhcCCCcCcceEEEEEccccc
Confidence 543 24789999998874
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.80 E-value=1.5e-18 Score=133.05 Aligned_cols=154 Identities=19% Similarity=0.114 Sum_probs=96.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------------------------------ccCcceeeeEEEEEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------------------------------YKATIGADFLTKEVQF 52 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~ 52 (185)
...++|+++|+.++|||||+++|+....... .....+.+. ....+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~--~~~~~ 102 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDV--AYRYF 102 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEe--eEEEe
Confidence 4569999999999999999999875432110 001122233 33334
Q ss_pred CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.....++.|+||||+..+.......+..+|++++|+|+........... +... .... ..|+++++||+|+...
T Consensus 103 ~~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~-~~l~-~~lg-----~~~iIvvvNKiD~~~~ 175 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRH-SFIA-TLLG-----IKHLVVAVNKMDLVDY 175 (474)
T ss_pred ccCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHH-HHHH-HHhC-----CCceEEEEEeeccccc
Confidence 4445688999999998887766677899999999999976322111111 1111 1111 1378999999999753
Q ss_pred Cc--eeecHHHHHHHHHhc---CCCcEEEeeeccCCCHHHH
Q 029929 133 NS--RVVSEKKAKAWCASK---GNIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~ 168 (185)
.. .....+++..+.... ...+++++||++|.|+.++
T Consensus 176 ~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 176 SEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 21 111222333333332 2478999999999998764
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.80 E-value=2.9e-18 Score=130.34 Aligned_cols=162 Identities=18% Similarity=0.127 Sum_probs=103.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC------CC----------CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR------KF----------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
...++|+++|+.++|||||+++|.+. .. .....+..+.+ .....+.....++.|+||||+..
T Consensus 59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~--~~~~~~~~~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA--TAHVEYETAKRHYAHVDCPGHAD 136 (447)
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee--eeEEEEcCCCeEEEEEECCCccc
Confidence 45689999999999999999999732 10 11122333444 34444555566889999999988
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCce-eecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSR-VVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~-~~~~~~~~~~~~ 147 (185)
+.......+..+|++++|+|+........ ...+..+.. . ++| +++++||+|+.+.... +...+++..+..
T Consensus 137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~----~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~ 208 (447)
T PLN03127 137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ----V---GVPSLVVFLNKVDVVDDEELLELVEMELRELLS 208 (447)
T ss_pred hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----c---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 87777777788999999999986432221 122222211 1 668 4788999999753211 111223334443
Q ss_pred hcC----CCcEEEeeec---cCCC-------HHHHHHHHHHHHh
Q 029929 148 SKG----NIPYFETSAK---EGFN-------VEAAFECIAKNAL 177 (185)
Q Consensus 148 ~~~----~~~~~~~s~~---~~~~-------i~~~~~~i~~~~~ 177 (185)
..+ .++++++|+. ++.| +.++++.|.+.++
T Consensus 209 ~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 209 FYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 322 3688888875 4554 7788888887765
No 241
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.80 E-value=1.4e-18 Score=132.27 Aligned_cols=154 Identities=16% Similarity=0.200 Sum_probs=101.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEEC
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFE 53 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 53 (185)
....++|+++|+.++|||||+.+|+..... ..... +.+.......+.
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~r--GiTid~~~~~~~ 81 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERER--GITIDIALWKFE 81 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhc--CEeEEeeeEEEc
Confidence 355689999999999999999998752110 01112 233333444455
Q ss_pred CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---H---HHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---F---DNLNNWREEFLIQASPSDPENFP-FVVLGNK 126 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~---~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK 126 (185)
.....++++|+||+.+|.......+..+|++++|+|+..... + ......+..... . ++| +|+++||
T Consensus 82 ~~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~---gi~~iiv~vNK 154 (446)
T PTZ00141 82 TPKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----L---GVKQMIVCINK 154 (446)
T ss_pred cCCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----c---CCCeEEEEEEc
Confidence 566789999999999999888888999999999999986420 0 111222222211 1 556 6789999
Q ss_pred CCCCC----CCceeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 127 TDVDG----GNSRVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 127 ~Dl~~----~~~~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
+|... ....+...+++..+....+ .++++++|+.+|+|+.+
T Consensus 155 mD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 155 MDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 99532 1223333445555555433 37899999999999864
No 242
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.80 E-value=2e-18 Score=123.03 Aligned_cols=166 Identities=16% Similarity=0.112 Sum_probs=116.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh----ccccc---chhccCc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF----QSLGV---AFYRGAD 82 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~---~~~~~~d 82 (185)
.|.++|.||+|||||+++++..+......|+++..+....+.+. ..-.+++-|.||.-+- ..+-. ..+..+.
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~ 239 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR 239 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence 57789999999999999999998887778888888877777763 3346888899993221 22222 2346789
Q ss_pred EEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 83 CCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 83 ~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
++++|+|++..+ ..+.......++..+-... .++|.++|+||+|+... .+........+........++++|+
T Consensus 240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L--~~K~~ivv~NKiD~~~~--~e~~~~~~~~l~~~~~~~~~~~ISa 315 (369)
T COG0536 240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKL--AEKPRIVVLNKIDLPLD--EEELEELKKALAEALGWEVFYLISA 315 (369)
T ss_pred eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHh--ccCceEEEEeccCCCcC--HHHHHHHHHHHHHhcCCCcceeeeh
Confidence 999999998644 3555555555555442222 26699999999997654 2333333333433344233333999
Q ss_pred ccCCCHHHHHHHHHHHHhhcC
Q 029929 160 KEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.++.|+++++..+.+.+....
T Consensus 316 ~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 316 LTREGLDELLRALAELLEETK 336 (369)
T ss_pred hcccCHHHHHHHHHHHHHHhh
Confidence 999999999999998887664
No 243
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.80 E-value=4.1e-18 Score=122.32 Aligned_cols=145 Identities=13% Similarity=0.155 Sum_probs=93.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ---- 71 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---- 71 (185)
...++|+|+|.+|+|||||+|+|++..+... ..++.+.......+..++..+.+++|||||-....
T Consensus 2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 3468999999999999999999998876533 23344445555555666777899999999932211
Q ss_pred ----------------------ccccchh--ccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929 72 ----------------------SLGVAFY--RGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (185)
Q Consensus 72 ----------------------~~~~~~~--~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 126 (185)
......+ ..+|+++|+++.+.... ... ..++..+ .. ++|+++|+||
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D-~~~lk~l----~~----~v~vi~VinK 152 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLD-IEFMKRL----SK----RVNIIPVIAK 152 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHH-HHHHHHH----hc----cCCEEEEEEC
Confidence 0111222 25789999998874211 111 2222322 11 5799999999
Q ss_pred CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|+....+.....+.+.+.+...+ ++++.....
T Consensus 153 ~D~l~~~e~~~~k~~i~~~l~~~~-i~~~~~~~~ 185 (276)
T cd01850 153 ADTLTPEELKEFKQRIMEDIEEHN-IKIYKFPED 185 (276)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcC-CceECCCCC
Confidence 999764434445556666666665 777766543
No 244
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.79 E-value=2e-18 Score=130.39 Aligned_cols=150 Identities=19% Similarity=0.147 Sum_probs=94.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCC---------------------------------CccCcceeeeEEEEEEECCc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSN---------------------------------QYKATIGADFLTKEVQFEDR 55 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 55 (185)
++|+++|+.++|||||+.+|+...... ......+.+.. ...+...
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~--~~~~~~~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVA--YRYFSTD 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEee--eEEEccC
Confidence 589999999999999999986432110 01111223332 3333344
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
...+.++||||+..|.......+..+|++++|+|+.........+. +..+. ... ..++++++||+|+......
T Consensus 79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~-~~~~~-~~~-----~~~iivviNK~D~~~~~~~ 151 (406)
T TIGR02034 79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH-SYIAS-LLG-----IRHVVLAVNKMDLVDYDEE 151 (406)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH-HHHHH-HcC-----CCcEEEEEEecccccchHH
Confidence 5688999999999987777778899999999999986432221111 11111 111 2258899999999753211
Q ss_pred --eecHHHHHHHHHhcC--CCcEEEeeeccCCCHHH
Q 029929 136 --VVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 136 --~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~ 167 (185)
+...+++..+....+ .++++++||.+|+|+.+
T Consensus 152 ~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 111233333333332 36799999999999875
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.79 E-value=5.3e-19 Score=122.82 Aligned_cols=171 Identities=19% Similarity=0.274 Sum_probs=105.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----cccchhccCcE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGADC 83 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d~ 83 (185)
||+++|+.+|||||+.+.++++..+.. ..-..+.+.....+... ....+.+||+||+..+.. .....++.+++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~-~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~ 79 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL-SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV 79 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT-TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC-CCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence 799999999999999998887764422 11223333344444322 346899999999865543 35667899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH----HhcC--CCcEEEe
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC----ASKG--NIPYFET 157 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~--~~~~~~~ 157 (185)
+|||+|+.+.+-.+.+..+..-+...... .++..+.++++|+|+..++.+....++..+.. ...+ .+.++.+
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 99999999655455544443333222111 23778999999999987654444444333322 2222 2668888
Q ss_pred eeccCCCHHHHHHHHHHHHhhcCCccc
Q 029929 158 SAKEGFNVEAAFECIAKNALKNEPQEE 184 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~~~~~ 184 (185)
|..+ +.+-+++..+++.+.++.+..|
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~~~~le 183 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPNLSTLE 183 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTTHCCCC
T ss_pred cCcC-cHHHHHHHHHHHHHcccHHHHH
Confidence 8887 6899999999999887765544
No 246
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.79 E-value=4.3e-18 Score=118.30 Aligned_cols=113 Identities=20% Similarity=0.162 Sum_probs=77.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCC----------------ccCcceeeeEEEEEEEC--------CcEEEEEEecCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQ----------------YKATIGADFLTKEVQFE--------DRLFTLQIWDTA 65 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~--------~~~~~~~~~D~~ 65 (185)
+|+++|+.++|||||+.+|+....... .....+.........+. +..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999975432100 01111112112222222 347889999999
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
|+..+......+++.+|++++|+|+....+.... ..+.... . .++|+++++||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~----~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQAL----K---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHH----H---cCCCEEEEEECCCcc
Confidence 9999999999999999999999999976554432 2222221 1 156999999999986
No 247
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.78 E-value=9.1e-18 Score=126.02 Aligned_cols=159 Identities=23% Similarity=0.240 Sum_probs=119.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.++.-|-++|+..-|||||+.+|-+.........+++..+.--.+..+. +-.++|+|||||..|..++....+-.|.++
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~-G~~iTFLDTPGHaAF~aMRaRGA~vtDIvV 229 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS-GKSITFLDTPGHAAFSAMRARGANVTDIVV 229 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCC-CCEEEEecCCcHHHHHHHHhccCccccEEE
Confidence 4667899999999999999999999888776666776666666666663 368999999999999999999999999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH--HHHh-cCCCcEEEeee
Q 029929 86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA--WCAS-KGNIPYFETSA 159 (185)
Q Consensus 86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~s~ 159 (185)
+|+.++| |.+.+.++ +... .++|+++.+||+|.++.+......+.+.. .... -++.+++++||
T Consensus 230 LVVAadDGVmpQT~EaIk--------hAk~---A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145|consen 230 LVVAADDGVMPQTLEAIK--------HAKS---ANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred EEEEccCCccHhHHHHHH--------HHHh---cCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeec
Confidence 9999988 34443332 1122 28899999999998875433222222111 1111 24678999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKNA 176 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~ 176 (185)
++|.|++.|.+.+.-..
T Consensus 299 l~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 299 LTGENLDLLEEAILLLA 315 (683)
T ss_pred ccCCChHHHHHHHHHHH
Confidence 99999999998877654
No 248
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.78 E-value=2.5e-17 Score=120.00 Aligned_cols=164 Identities=18% Similarity=0.186 Sum_probs=101.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE---------------------CC-cEEEEEEecCCCh-
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------ED-RLFTLQIWDTAGQ- 67 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~-~~~~~~~~D~~g~- 67 (185)
|+++|.+|+|||||++++++........|+++.++......+ ++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 579999999999999999988765444455544443333222 12 3467999999996
Q ss_pred ---hhhcccccc---hhccCcEEEEEEECCC---------------h-hhHHHHH----HH--------HHH--------
Q 029929 68 ---ERFQSLGVA---FYRGADCCVLVYDVNV---------------M-KSFDNLN----NW--------REE-------- 105 (185)
Q Consensus 68 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~~~~~~~----~~--------~~~-------- 105 (185)
.....+... .++.+|++++|+|++. | +.++.+. .| +..
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 333333333 4789999999999973 1 1111111 11 000
Q ss_pred ---------------------HHhhcCC----C-----------------CCCCCcEEEEEeCCCCCCCCceeecHHHHH
Q 029929 106 ---------------------FLIQASP----S-----------------DPENFPFVVLGNKTDVDGGNSRVVSEKKAK 143 (185)
Q Consensus 106 ---------------------~~~~~~~----~-----------------~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~ 143 (185)
+...+.. . ....+|+++++||+|+.... . ..+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~--~-~~~--- 234 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAE--N-NIS--- 234 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChH--H-HHH---
Confidence 0000000 0 02246999999999975431 1 111
Q ss_pred HHHHhcCCCcEEEeeeccCCCHHHHHH-HHHHHHhhcC
Q 029929 144 AWCASKGNIPYFETSAKEGFNVEAAFE-CIAKNALKNE 180 (185)
Q Consensus 144 ~~~~~~~~~~~~~~s~~~~~~i~~~~~-~i~~~~~~~~ 180 (185)
.+.......+++++||+.+.++.++.+ .+.+.+++..
T Consensus 235 ~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~ 272 (318)
T cd01899 235 KLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDS 272 (318)
T ss_pred HHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCC
Confidence 222233346899999999999999998 6999887653
No 249
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.78 E-value=8.2e-18 Score=130.10 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=80.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
+..+|+++|+.++|||||.++|+....... .....+.++......+....+.+++|||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG 88 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG 88 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence 457999999999999999999964211100 001112333344444455567899999999
Q ss_pred hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
+.++......+++.+|++|+|+|+++.... ....++... .. .++|+++++||+|+..
T Consensus 89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~---~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVC----RL---RDTPIFTFINKLDRDG 145 (526)
T ss_pred chhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHH----Hh---cCCCEEEEEECCcccc
Confidence 998888778888999999999999874322 122333222 22 2779999999999865
No 250
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.77 E-value=4.7e-17 Score=115.34 Aligned_cols=159 Identities=20% Similarity=0.150 Sum_probs=114.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----h---cccccchh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----F---QSLGVAFY 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~---~~~~~~~~ 78 (185)
+.--+++++|.|++|||||+++|++.+......++++.+.....+.+.+ .+++++|+||.-. - ........
T Consensus 61 sGda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 61 SGDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred cCCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 3456899999999999999999999998888889999999888888876 5777889998221 1 23455667
Q ss_pred ccCcEEEEEEECCChhh-HHHHHHHHHHH---------------------------------------------------
Q 029929 79 RGADCCVLVYDVNVMKS-FDNLNNWREEF--------------------------------------------------- 106 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~-~~~~~~~~~~~--------------------------------------------------- 106 (185)
+.||++++|+|+..... .+.+.+.+...
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 89999999999996554 44444333320
Q ss_pred -----------HhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 107 -----------LIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 107 -----------~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
.+.... ...-+|.+.|.||+|+... ++...+... ...+++||+++.|++++.+.|.+.
T Consensus 219 ~Ir~dvTlDd~id~l~~-nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~---~~~v~isa~~~~nld~L~e~i~~~ 287 (365)
T COG1163 219 LIREDVTLDDLIDALEG-NRVYKPALYVVNKIDLPGL-------EELERLARK---PNSVPISAKKGINLDELKERIWDV 287 (365)
T ss_pred EEecCCcHHHHHHHHhh-cceeeeeEEEEecccccCH-------HHHHHHHhc---cceEEEecccCCCHHHHHHHHHHh
Confidence 000000 0112289999999998852 233333332 278999999999999999999887
Q ss_pred Hh
Q 029929 176 AL 177 (185)
Q Consensus 176 ~~ 177 (185)
+-
T Consensus 288 L~ 289 (365)
T COG1163 288 LG 289 (365)
T ss_pred hC
Confidence 63
No 251
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.5e-18 Score=111.18 Aligned_cols=157 Identities=20% Similarity=0.309 Sum_probs=114.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.-+++++|-.|+|||||++.|-+..... ..||.. +++....+. +..++.+|.+|+...+..+..++..+|++++.
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~q-hvPTlH--PTSE~l~Ig--~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~l 94 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLH--PTSEELSIG--GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYL 94 (193)
T ss_pred CceEEEEeecCCchhhHHHHHccccccc-cCCCcC--CChHHheec--CceEEEEccccHHHHHHHHHHHHhhhceeEee
Confidence 3589999999999999999888766442 223321 112223333 46788899999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH------HHhc----------CC
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW------CASK----------GN 151 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~------~~~~----------~~ 151 (185)
+|+.+.+.+.+...-++.+...-... +.|+++.+||+|.+... ..++.+.. .... ..
T Consensus 95 vda~d~er~~es~~eld~ll~~e~la---~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v~~~~~~~rp 167 (193)
T KOG0077|consen 95 VDAYDQERFAESKKELDALLSDESLA---TVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKVNLTDSNVRP 167 (193)
T ss_pred eehhhHHHhHHHHHHHHHHHhHHHHh---cCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccccccCCCCCe
Confidence 99999999988776666655443333 78999999999998753 22222221 1110 12
Q ss_pred CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 152 IPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 152 ~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
..++.||...+.|..+.+.|+.+.+
T Consensus 168 ~evfmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 168 LEVFMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEEEEccCccceeeeehhhhc
Confidence 3578899999999999999987754
No 252
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.77 E-value=1.5e-17 Score=123.01 Aligned_cols=168 Identities=15% Similarity=0.171 Sum_probs=124.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC---------------CCCccCcceeeeEEEEEEE---CCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------SNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~ 67 (185)
.+..+..++-+-..|||||..++..... .-....+++.......+.+ ++..+.++++|||||
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 4556889999999999999999875322 1123334444444444433 347899999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (185)
-+|.......+..|.++++|+|++..-....+...+..+.. +.-++-|+||+||+..+. +...+++.....
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~--------~LeIiPViNKIDLP~Adp-ervk~eIe~~iG 157 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN--------NLEIIPVLNKIDLPAADP-ERVKQEIEDIIG 157 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc--------CcEEEEeeecccCCCCCH-HHHHHHHHHHhC
Confidence 99999999999999999999999986555666666665532 557999999999997642 223444444433
Q ss_pred hcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 148 SKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 148 ~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
.+....+.+||++|.|++++++.|++.++....+.
T Consensus 158 -id~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 158 -IDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred -CCcchheeEecccCCCHHHHHHHHHhhCCCCCCCC
Confidence 33357899999999999999999999999776443
No 253
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.77 E-value=7.8e-18 Score=133.68 Aligned_cols=155 Identities=19% Similarity=0.135 Sum_probs=95.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCc--------------------ceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KAT--------------------IGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-----------~~~--------------------~~~~~~~~~~~~~~ 54 (185)
...++|+++|++++|||||+++|+........ ... .+.+.......+..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 34589999999999999999999864321110 000 11122222223334
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 134 (185)
...++.++||||+..+.......+..+|++++|+|+........ ......+... . ..++++++||+|+...+.
T Consensus 102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t-~e~~~~~~~~-~-----~~~iivvvNK~D~~~~~~ 174 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQT-RRHSFIASLL-G-----IRHVVLAVNKMDLVDYDQ 174 (632)
T ss_pred CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccC-HHHHHHHHHh-C-----CCeEEEEEEecccccchh
Confidence 45678899999998887666677899999999999976432211 1111111111 1 236889999999975211
Q ss_pred --eeecHHHHHHHHHhcC--CCcEEEeeeccCCCHHH
Q 029929 135 --RVVSEKKAKAWCASKG--NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 135 --~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~~ 167 (185)
......++..+....+ ..+++++||++|.|+.+
T Consensus 175 ~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 175 EVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 1112233333434333 35799999999999874
No 254
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=2.1e-18 Score=130.07 Aligned_cols=167 Identities=21% Similarity=0.250 Sum_probs=118.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+||+++|..|+||||||.++....+.+...+-....... .......+..+++|++...+.+......++++|++.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 45999999999999999999999999876544433222212 2222233457889998877666666788899999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-CCcEEEeeeccCCC
Q 029929 87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-NIPYFETSAKEGFN 164 (185)
Q Consensus 87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 164 (185)
+|+.+++++.+.+. .|+..+.+... ...++|+|+|+||+|....+...... ...-+...+. .-..++|||++-.+
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~--~~~~~PVILvGNK~d~~~~~~~s~e~-~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFG--DYHETPVILVGNKSDNGDNENNSDEV-NTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccC--CCccCCEEEEeeccCCccccccchhH-HHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 99999999999995 57776655431 12378999999999998654331111 1222222221 12468999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029929 165 VEAAFECIAKNALK 178 (185)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (185)
+.++|..-.+++..
T Consensus 163 ~~e~fYyaqKaVih 176 (625)
T KOG1707|consen 163 VSELFYYAQKAVIH 176 (625)
T ss_pred hHhhhhhhhheeec
Confidence 99999887776653
No 255
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.77 E-value=5.2e-18 Score=117.81 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=111.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFY 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~ 78 (185)
..+++|+++|.+|+|||||||+|+.....+...-..+.+.........+. -.+++||+||..+ ++.....++
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 45789999999999999999999976655443333333333333322222 4788999999433 666778888
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC------ce-------eecH---HHH
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN------SR-------VVSE---KKA 142 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------~~-------~~~~---~~~ 142 (185)
...|++++++++.++.-.-. ..++..+..... +.++++++|.+|..... .. +... +.+
T Consensus 116 ~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~~-----~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTD-EDFLRDVIILGL-----DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred hhccEEEEeccCCCccccCC-HHHHHHHHHhcc-----CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 99999999999998654333 345555543332 36999999999986542 00 0111 112
Q ss_pred HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
..+++. -.|++..+...+.|++.+...+++.++..
T Consensus 190 ~~~~q~--V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 190 GRLFQE--VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHHHhh--cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 222232 24788888899999999999999988743
No 256
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.6e-18 Score=125.36 Aligned_cols=159 Identities=18% Similarity=0.216 Sum_probs=102.6
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-----------------------------CCccCcceeeeEEEEEEECCc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-----------------------------NQYKATIGADFLTKEVQFEDR 55 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 55 (185)
....++++++|+..+|||||+-+|+-.... .....-.+.+.......++..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 345699999999999999999888532110 001112234555555566666
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHH--HHHH--HHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNW--REEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.+.++++|+||+.+|-..+.....++|++|+|+|+.+.+--.. .... -+.++. ...+ -..+|+++||+|+.+
T Consensus 84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La--~tlG--i~~lIVavNKMD~v~ 159 (428)
T COG5256 84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLA--RTLG--IKQLIVAVNKMDLVS 159 (428)
T ss_pred CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHH--HhcC--CceEEEEEEcccccc
Confidence 7889999999999999999999999999999999987631111 0000 011111 1111 125788999999987
Q ss_pred CCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 132 GNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
-++ .+....+...+....+ ..+|+++|+..|+|+.+
T Consensus 160 wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 160 WDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 421 1222223333333333 36799999999998754
No 257
>PRK13351 elongation factor G; Reviewed
Probab=99.76 E-value=1.5e-17 Score=133.27 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=81.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-------------CccC---cceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-------------QYKA---TIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (185)
...+|+++|+.++|||||+++|+...... ...+ ..+.+.......+......+++|||||+.++
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 45799999999999999999997532110 0000 0111122222223334578999999999998
Q ss_pred cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+...
T Consensus 87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~-------~~~p~iiviNK~D~~~~ 140 (687)
T PRK13351 87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR-------YGIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh-------cCCCEEEEEECCCCCCC
Confidence 88888999999999999999986655543333 22221 16799999999998753
No 258
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.76 E-value=2.3e-17 Score=127.66 Aligned_cols=118 Identities=21% Similarity=0.212 Sum_probs=81.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (185)
.+..+|+++|+.++|||||+++|+....... .....+.++......++...+.+.+||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 3567999999999999999999853211100 00112334444455556667899999999
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
|+..+.......++.+|++|+|+|+.+.-. .....++... .. .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~----~~---~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVT----RL---RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHH----Hh---cCCCEEEEEECccccC
Confidence 998888777778899999999999986321 1122333322 11 2679999999999853
No 259
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.76 E-value=5.5e-17 Score=111.49 Aligned_cols=166 Identities=14% Similarity=0.101 Sum_probs=100.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCc--cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccc----c
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQY--KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLG----V 75 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~----~ 75 (185)
++|+++|.+|+|||||+|++++....... .+..+........... +..+.++||||..+.. ... .
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~ 78 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD--GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLS 78 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC--CeEEEEEECcCCCCccCChHHHHHHHHHHHH
Confidence 47999999999999999999987654322 1222333333333333 3578899999943321 111 1
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceee----cHHHHHHHHHhcCC
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCASKGN 151 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~ 151 (185)
......|++++|+++.+ -+.+. ...+..+...+... .-.++++++|+.|.......+. ....++......+
T Consensus 79 ~~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~--~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~- 153 (196)
T cd01852 79 LSAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEK--VLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG- 153 (196)
T ss_pred hcCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChH--hHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC-
Confidence 22357899999999986 22221 23344444333211 1237899999999765422111 1234455555544
Q ss_pred CcEEEee-----eccCCCHHHHHHHHHHHHhhcCC
Q 029929 152 IPYFETS-----AKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 152 ~~~~~~s-----~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
..++..+ +..+.++.++++.|.+.+.++.+
T Consensus 154 ~r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~ 188 (196)
T cd01852 154 GRYVAFNNKAKGEEQEQQVKELLAKVESMVKENGG 188 (196)
T ss_pred CeEEEEeCCCCcchhHHHHHHHHHHHHHHHHhcCC
Confidence 3444444 45678899999999999997543
No 260
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.74 E-value=1.1e-16 Score=100.89 Aligned_cols=106 Identities=20% Similarity=0.276 Sum_probs=69.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccchhc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFYR 79 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~~ 79 (185)
+|+|+|.+|+|||||+|+|++... .....+..+.......+.+.+. .+.++||||... ........+.
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~--~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~ 78 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNK--KFILVDTPGINDGESQDNDGKEIRKFLEQIS 78 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTE--EEEEEESSSCSSSSHHHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeecee--eEEEEeCCCCcccchhhHHHHHHHHHHHHHH
Confidence 689999999999999999998643 2333344444444455555554 446999999321 1112333448
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 126 (185)
.+|++++|+|++++.. +....+++.+. .+.|+++|+||
T Consensus 79 ~~d~ii~vv~~~~~~~-~~~~~~~~~l~--------~~~~~i~v~NK 116 (116)
T PF01926_consen 79 KSDLIIYVVDASNPIT-EDDKNILRELK--------NKKPIILVLNK 116 (116)
T ss_dssp TESEEEEEEETTSHSH-HHHHHHHHHHH--------TTSEEEEEEES
T ss_pred HCCEEEEEEECCCCCC-HHHHHHHHHHh--------cCCCEEEEEcC
Confidence 8999999999877322 22233333331 26799999998
No 261
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.73 E-value=1.4e-17 Score=111.13 Aligned_cols=119 Identities=22% Similarity=0.285 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE-CCcEEEEEEecCCChhhhcccccch---hccCcEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF-EDRLFTLQIWDTAGQERFQSLGVAF---YRGADCC 84 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~d~~ 84 (185)
-.|+++|+.|||||+|...|..+...+...+. . . ...+.+ ......+.++|+|||.+.+...... ...+.++
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~-n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I 79 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--N-NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI 79 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS---B---S-S--E-EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--C-CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence 57899999999999999999998644322222 1 1 111222 1233467889999999888765554 7889999
Q ss_pred EEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 85 VLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 85 i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|||+|++. +........++-.++...... ...+|++|++||.|+...
T Consensus 80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~-~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQ-KNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHCC-TT--EEEEEEE-TTSTT-
T ss_pred EEEEeCccchhhHHHHHHHHHHHHHhhhhc-cCCCCEEEEEeCcccccc
Confidence 99999985 444444444444444443322 337799999999999765
No 262
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.72 E-value=5e-17 Score=99.59 Aligned_cols=138 Identities=25% Similarity=0.296 Sum_probs=96.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh----hhcccccchhccCcEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----RFQSLGVAFYRGADCCV 85 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----~~~~~~~~~~~~~d~~i 85 (185)
|++++|+.|||||||.+++.+...... .|- -+++.... .+||||.- .+..........+|+++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lyk--KTQ-------Ave~~d~~----~IDTPGEy~~~~~~Y~aL~tt~~dadvi~ 69 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYK--KTQ-------AVEFNDKG----DIDTPGEYFEHPRWYHALITTLQDADVII 69 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhc--ccc-------eeeccCcc----ccCCchhhhhhhHHHHHHHHHhhccceee
Confidence 789999999999999999998764321 111 11222221 45999933 33333344557899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|-.++++++.-. ..+... ...|+|-|++|.||++. ...+..+.+...-+.-++|.+|+.++.|+
T Consensus 70 ~v~~and~~s~f~-----p~f~~~------~~k~vIgvVTK~DLaed----~dI~~~~~~L~eaGa~~IF~~s~~d~~gv 134 (148)
T COG4917 70 YVHAANDPESRFP-----PGFLDI------GVKKVIGVVTKADLAED----ADISLVKRWLREAGAEPIFETSAVDNQGV 134 (148)
T ss_pred eeecccCccccCC-----cccccc------cccceEEEEecccccch----HhHHHHHHHHHHcCCcceEEEeccCcccH
Confidence 9999998765422 112111 14579999999999853 34555666667777789999999999999
Q ss_pred HHHHHHHHHH
Q 029929 166 EAAFECIAKN 175 (185)
Q Consensus 166 ~~~~~~i~~~ 175 (185)
+++++.|...
T Consensus 135 ~~l~~~L~~~ 144 (148)
T COG4917 135 EELVDYLASL 144 (148)
T ss_pred HHHHHHHHhh
Confidence 9999988753
No 263
>PRK12739 elongation factor G; Reviewed
Probab=99.72 E-value=3.2e-16 Score=125.58 Aligned_cols=117 Identities=18% Similarity=0.117 Sum_probs=81.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC------------------CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
....+|+++|+.++|||||+++|+..... ....+.++.+.....+.. ...+++++||||+
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~--~~~~i~liDTPG~ 83 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KGHRINIIDTPGH 83 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE--CCEEEEEEcCCCH
Confidence 34679999999999999999999753111 001223333433334433 4568899999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.++...+...++.+|++++|+|+........ ...+..+. .. ++|.++++||+|+...
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~----~~---~~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQAD----KY---GVPRIVFVNKMDRIGA 140 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence 8888888889999999999999987533222 22222222 11 6799999999998753
No 264
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.71 E-value=9e-16 Score=115.03 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=58.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEE---------------------C-CcEEEEEEecCCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQF---------------------E-DRLFTLQIWDTAG 66 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~D~~g 66 (185)
++|+++|.+|+|||||+++|++........++.+.++......+ + .....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 68999999999999999999988766444455554444433221 1 1236789999999
Q ss_pred h----hhhcccccch---hccCcEEEEEEECC
Q 029929 67 Q----ERFQSLGVAF---YRGADCCVLVYDVN 91 (185)
Q Consensus 67 ~----~~~~~~~~~~---~~~~d~~i~v~d~~ 91 (185)
. .....+...+ ++.+|++++|+|+.
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 2223333344 78999999999997
No 265
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.1e-16 Score=107.12 Aligned_cols=163 Identities=18% Similarity=0.257 Sum_probs=103.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc---cCc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR---GAD 82 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~d 82 (185)
+..-.|+++|+.+||||+|...|..+...... +.++.....+.+.. -.++++|.|||.+.+.-...++. .+-
T Consensus 36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv---tSiepn~a~~r~gs--~~~~LVD~PGH~rlR~kl~e~~~~~~~ak 110 (238)
T KOG0090|consen 36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTV---TSIEPNEATYRLGS--ENVTLVDLPGHSRLRRKLLEYLKHNYSAK 110 (238)
T ss_pred ccCCcEEEEecCCCCceeeeeehhcCCccCee---eeeccceeeEeecC--cceEEEeCCCcHHHHHHHHHHccccccce
Confidence 34468999999999999999998877433221 11222222232232 24789999999998887777776 688
Q ss_pred EEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH----Hh---------
Q 029929 83 CCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC----AS--------- 148 (185)
Q Consensus 83 ~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~----~~--------- 148 (185)
+++||+|... .........++-.+...... ...+.|++|+.||.|+.-....+...+.+++-. ..
T Consensus 111 aiVFVVDSa~f~k~vrdvaefLydil~~~~~-~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ 189 (238)
T KOG0090|consen 111 AIVFVVDSATFLKNVRDVAEFLYDILLDSRV-KKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISD 189 (238)
T ss_pred eEEEEEeccccchhhHHHHHHHHHHHHhhcc-ccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 9999999865 22333333333334333322 233679999999999975433333333222111 00
Q ss_pred ---------------------c-CCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 149 ---------------------K-GNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 149 ---------------------~-~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
. ....|.++|++++ +++++-+||.++
T Consensus 190 ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 190 EDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred ccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0 1245788999988 899999999875
No 266
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.70 E-value=2.7e-16 Score=126.05 Aligned_cols=116 Identities=18% Similarity=0.072 Sum_probs=80.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-----C-------------ccCcceeeeEEEEEEECCcEEEEEEecCCChh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-----Q-------------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE 68 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-----~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~ 68 (185)
...+|+++|++++|||||+++|....... . ....++.+.....+.. .+.++++|||||+.
T Consensus 9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~--~~~~i~liDTPG~~ 86 (689)
T TIGR00484 9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW--KGHRINIIDTPGHV 86 (689)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE--CCeEEEEEECCCCc
Confidence 45799999999999999999997432110 0 0122333333333333 45789999999998
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
++......+++.+|++++|+|+.+....... .++..+. .. ++|+++++||+|+...
T Consensus 87 ~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~----~~---~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 87 DFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQAN----RY---EVPRIAFVNKMDKTGA 142 (689)
T ss_pred chhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHH----Hc---CCCEEEEEECCCCCCC
Confidence 8887888889999999999999875443322 2222222 11 6799999999999864
No 267
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=1.4e-15 Score=108.93 Aligned_cols=169 Identities=23% Similarity=0.216 Sum_probs=114.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCcceeeeEEEEEEE-------CCcEEEEEEecCCChhhhc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQF-------EDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~D~~g~~~~~ 71 (185)
...+++.++|+..||||||.+++..-. -+.+.....+.+..-..+.. .+...+++++|+||+...-
T Consensus 5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 345999999999999999999996432 12333344444444444332 3455788999999998877
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHH-HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH---
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNW-REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--- 147 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--- 147 (185)
........-.|.+++|+|+........++.+ +.++. ....++|+||+|...++.+.-..+.......
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~---------c~klvvvinkid~lpE~qr~ski~k~~kk~~KtL 155 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL---------CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTL 155 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh---------ccceEEEEeccccccchhhhhHHHHHHHHHHHHH
Confidence 7666666778999999999864333332221 11221 3368899999998876555443333332222
Q ss_pred -h---cCCCcEEEeeeccC----CCHHHHHHHHHHHHhhcCCcc
Q 029929 148 -S---KGNIPYFETSAKEG----FNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 148 -~---~~~~~~~~~s~~~~----~~i~~~~~~i~~~~~~~~~~~ 183 (185)
. .++.|++++|+..| +++.++.+.|..++.....+.
T Consensus 156 e~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 156 ESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred HhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 1 23589999999999 789999999998888665554
No 268
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=2.6e-16 Score=117.03 Aligned_cols=170 Identities=19% Similarity=0.137 Sum_probs=106.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---------ccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~ 75 (185)
+..++|+++|+||+|||||+|+|.+.+.. ..+.++++.+..-..+.++ ++.+.+.||+|..+... ...
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~--G~~v~L~DTAGiRe~~~~~iE~~gI~rA~ 343 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN--GVPVRLSDTAGIREESNDGIEALGIERAR 343 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC--CeEEEEEeccccccccCChhHHHhHHHHH
Confidence 34589999999999999999999988865 4556666666655555544 47788889999554111 123
Q ss_pred chhccCcEEEEEEECCC--hhhHHHHHHHHHHHHhhcCC--CCCCCCcEEEEEeCCCCCCCCc-eee-cHHHHHHHHHhc
Q 029929 76 AFYRGADCCVLVYDVNV--MKSFDNLNNWREEFLIQASP--SDPENFPFVVLGNKTDVDGGNS-RVV-SEKKAKAWCASK 149 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~Dl~~~~~-~~~-~~~~~~~~~~~~ 149 (185)
..+..+|++++|+|+.. -++...+...+......+.. ....+.|++++.||.|+..... ... ....... ...
T Consensus 344 k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~--~~~ 421 (531)
T KOG1191|consen 344 KRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSA--EGR 421 (531)
T ss_pred HHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceecccc--ccC
Confidence 34578999999999943 22222222333332221111 0112468999999999986511 000 0001111 111
Q ss_pred CCCc-EEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 150 GNIP-YFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 150 ~~~~-~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+..+ +.++|+++++|++++...|...+...
T Consensus 422 ~~~~i~~~vs~~tkeg~~~L~~all~~~~~~ 452 (531)
T KOG1191|consen 422 SVFPIVVEVSCTTKEGCERLSTALLNIVERL 452 (531)
T ss_pred cccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence 1233 45599999999999999988876543
No 269
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=2.4e-15 Score=116.20 Aligned_cols=111 Identities=24% Similarity=0.261 Sum_probs=72.1
Q ss_pred EEEEEecCCChhh-----hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 57 FTLQIWDTAGQER-----FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 57 ~~~~~~D~~g~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.++.|+||||... +.......+..+|+++||+|+....+... ..+...+.. .+. +.|+++|+||+|+..
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk----~~K-~~PVILVVNKIDl~d 303 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILA----VGQ-SVPLYVLVNKFDQQD 303 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHh----cCC-CCCEEEEEEcccCCC
Confidence 4678999999432 22234457899999999999987433332 222333321 111 259999999999864
Q ss_pred CCceeecHHHHHHHHH----h--cCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 132 GNSRVVSEKKAKAWCA----S--KGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~----~--~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
.. ....+.+..+.. . .....++++||+.|.|++++++.|...
T Consensus 304 re--eddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 304 RN--SDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred cc--cchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 32 122334444322 1 123579999999999999999998873
No 270
>PRK00007 elongation factor G; Reviewed
Probab=99.67 E-value=9.7e-16 Score=122.78 Aligned_cols=146 Identities=15% Similarity=0.073 Sum_probs=90.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC--C----------------CccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--N----------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
....+|+++|++++|||||+++|+..... . ...+..+.+.....+.. ....++++||||+
T Consensus 8 ~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~--~~~~~~liDTPG~ 85 (693)
T PRK00007 8 ERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW--KDHRINIIDTPGH 85 (693)
T ss_pred cceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE--CCeEEEEEeCCCc
Confidence 44679999999999999999999742111 0 01223333333333333 3568899999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (185)
.++.......++.+|++++|+|+...-.... ...+..+... ++|.++++||+|+..... ....+++++...
T Consensus 86 ~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~-------~~p~iv~vNK~D~~~~~~-~~~~~~i~~~l~ 156 (693)
T PRK00007 86 VDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY-------KVPRIAFVNKMDRTGADF-YRVVEQIKDRLG 156 (693)
T ss_pred HHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc-------CCCEEEEEECCCCCCCCH-HHHHHHHHHHhC
Confidence 8887778888899999999999876433332 2222222211 679999999999986431 112223322222
Q ss_pred hcCCCcEEEeeeccC
Q 029929 148 SKGNIPYFETSAKEG 162 (185)
Q Consensus 148 ~~~~~~~~~~s~~~~ 162 (185)
.......+++|+..+
T Consensus 157 ~~~~~~~ipisa~~~ 171 (693)
T PRK00007 157 ANPVPIQLPIGAEDD 171 (693)
T ss_pred CCeeeEEecCccCCc
Confidence 211134556666554
No 271
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.67 E-value=3.8e-16 Score=116.34 Aligned_cols=167 Identities=16% Similarity=0.054 Sum_probs=116.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh-----hhcc-cccchh-
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-----RFQS-LGVAFY- 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~-~~~~~~- 78 (185)
.....++++|.||+|||||++.++..+....+.++++.......+ +.....++++||||.- +... ......
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~vGH~--dykYlrwQViDTPGILD~plEdrN~IEmqsITA 243 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLLVGHL--DYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA 243 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhhhhhh--hhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence 445688999999999999999999888777767776655554444 3344577888999921 1111 111111
Q ss_pred --ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 79 --RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 79 --~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+--.+|+|++|++... +.+.-..+++.+...+. +.|+|+|+||+|+...+......+++.+.....+++++
T Consensus 244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFa-----NK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v 318 (620)
T KOG1490|consen 244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFA-----NKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKV 318 (620)
T ss_pred HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhc-----CCceEEEeecccccCccccCHHHHHHHHHHHhccCceE
Confidence 3345889999998743 34443456666665554 67999999999998765555555556565666666999
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+.+|+.+.+|+.++.....++++..
T Consensus 319 ~~tS~~~eegVm~Vrt~ACe~LLa~ 343 (620)
T KOG1490|consen 319 VQTSCVQEEGVMDVRTTACEALLAA 343 (620)
T ss_pred EEecccchhceeeHHHHHHHHHHHH
Confidence 9999999999988877766665543
No 272
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=1.1e-15 Score=108.26 Aligned_cols=171 Identities=18% Similarity=0.161 Sum_probs=118.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeE------------------EEEEEEC------CcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFL------------------TKEVQFE------DRLFT 58 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~------------------~~~~~~~------~~~~~ 58 (185)
+..++|.++|+...|||||..+|.+--.. +.....++.... ...-... ..-..
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 45799999999999999999999753211 111111111000 0000011 12346
Q ss_pred EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS 138 (185)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 138 (185)
+.|+|.|||+.....+.....-.|++++|++++.+..-......+..+.-+. -..++|+-||+|++..+.....
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIig------ik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIG------IKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhc------cceEEEEecccceecHHHHHHH
Confidence 7899999999888877777788999999999998543333333333332211 1258899999999987777778
Q ss_pred HHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929 139 EKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 139 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
++++++|.... .++|++++||..+.|++-+++.|.+.++....+
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 88888888754 358999999999999999999999999866543
No 273
>PRK12740 elongation factor G; Reviewed
Probab=99.65 E-value=4.9e-15 Score=118.77 Aligned_cols=109 Identities=19% Similarity=0.151 Sum_probs=74.1
Q ss_pred EcCCCCCHHHHHHHHHhCCCCC------------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccccc
Q 029929 14 LGDSGVGKTSLMNQYVNRKFSN------------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGV 75 (185)
Q Consensus 14 iG~~~~GKstli~~l~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~ 75 (185)
+|+.++|||||+++|....... ...++.+.......+.. .++.+++|||||+.++...+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~--~~~~i~liDtPG~~~~~~~~~ 78 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW--KGHKINLIDTPGHVDFTGEVE 78 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE--CCEEEEEEECCCcHHHHHHHH
Confidence 5999999999999996432210 00122222332333333 457899999999988877788
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.++..+|++++|+|++......... .+..+.. .++|+++|+||+|+...
T Consensus 79 ~~l~~aD~vllvvd~~~~~~~~~~~-~~~~~~~-------~~~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 79 RALRVLDGAVVVVCAVGGVEPQTET-VWRQAEK-------YGVPRIIFVNKMDRAGA 127 (668)
T ss_pred HHHHHhCeEEEEEeCCCCcCHHHHH-HHHHHHH-------cCCCEEEEEECCCCCCC
Confidence 8899999999999998865544332 2222221 16799999999998643
No 274
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.64 E-value=6.8e-15 Score=120.48 Aligned_cols=146 Identities=23% Similarity=0.229 Sum_probs=98.5
Q ss_pred CHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc----------------EEEEEEecCCChhhhcccccchhccCcE
Q 029929 20 GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------------LFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 20 GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
+||||+.++.+.........+++.......+..+.. ...+.||||||++.+..+....+..+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 499999999998887666666665555544444321 1137999999999998888778888999
Q ss_pred EEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce--------------eecHHHHH---
Q 029929 84 CVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR--------------VVSEKKAK--- 143 (185)
Q Consensus 84 ~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--------------~~~~~~~~--- 143 (185)
+++|+|+++ +.+.+.+. .+.. .++|+++++||+|+...... +...+++.
T Consensus 553 vlLVVDa~~Gi~~qT~e~I~----~lk~-------~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l 621 (1049)
T PRK14845 553 AVLVVDINEGFKPQTIEAIN----ILRQ-------YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKL 621 (1049)
T ss_pred EEEEEECcccCCHhHHHHHH----HHHH-------cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHH
Confidence 999999986 44444332 1111 15799999999999642110 00011111
Q ss_pred -HH----HH-------------hcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 144 -AW----CA-------------SKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 144 -~~----~~-------------~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
.+ .. ..+.++++++||++|+|+++++.+|....
T Consensus 622 ~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~ 672 (1049)
T PRK14845 622 YELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLA 672 (1049)
T ss_pred HHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhh
Confidence 01 10 12357899999999999999999886543
No 275
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.62 E-value=9.1e-16 Score=106.58 Aligned_cols=120 Identities=20% Similarity=0.168 Sum_probs=68.6
Q ss_pred EEEEEecCCChhhh------cccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 57 FTLQIWDTAGQERF------QSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 57 ~~~~~~D~~g~~~~------~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
....++|||||-+. .......+ ...-+++||+|.....+.. .|...++..+...-..+.|+|+++||+|
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~---tFMSNMlYAcSilyktklp~ivvfNK~D 192 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPT---TFMSNMLYACSILYKTKLPFIVVFNKTD 192 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCch---hHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence 55778999995432 12222222 2345777888875422221 2222222222222223779999999999
Q ss_pred CCCCCceeecHHHHHHHH-----------------------HhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 129 VDGGNSRVVSEKKAKAWC-----------------------ASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+.+..-...+-.+...|- .-+.....+.+|+.+|.|+++++..+-+.+-+.
T Consensus 193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 987532111111111110 112346789999999999999999988776543
No 276
>PTZ00258 GTP-binding protein; Provisional
Probab=99.62 E-value=2.9e-14 Score=106.05 Aligned_cols=87 Identities=23% Similarity=0.176 Sum_probs=63.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER 69 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~ 69 (185)
+...++|+++|.||+|||||+|+|++........|+++.++....+.+.+. ..++.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 345689999999999999999999988776666677776666666655432 23588999999322
Q ss_pred -------hcccccchhccCcEEEEEEECC
Q 029929 70 -------FQSLGVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 70 -------~~~~~~~~~~~~d~~i~v~d~~ 91 (185)
........++.+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1112233457899999999984
No 277
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.62 E-value=5e-15 Score=119.14 Aligned_cols=119 Identities=21% Similarity=0.198 Sum_probs=80.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC---------------CCCC---ccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK---------------FSNQ---YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
....+|+++|+.++|||||+++|+... +.+. ...+.........+.+++..+.+.+|||||+
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 445799999999999999999997531 1110 1112222222233345667789999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.++.......++.+|++++|+|+...-.... ...+.... . .+.|.++++||+|....
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t-~~~~~~~~----~---~~~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQT-ETVLRQAL----K---ENVKPVLFINKVDRLIN 153 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccH-HHHHHHHH----H---cCCCEEEEEEChhcccc
Confidence 9888888889999999999999986322222 11112111 1 15688999999998653
No 278
>PRK13768 GTPase; Provisional
Probab=99.62 E-value=3.8e-15 Score=105.87 Aligned_cols=117 Identities=18% Similarity=0.143 Sum_probs=71.9
Q ss_pred EEEEecCCChhhhc---ccccchh---cc--CcEEEEEEECCChhhHHHHH--HHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 58 TLQIWDTAGQERFQ---SLGVAFY---RG--ADCCVLVYDVNVMKSFDNLN--NWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 58 ~~~~~D~~g~~~~~---~~~~~~~---~~--~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
.+.+||+||+.+.. ..+..++ .. .+++++|+|+.......... .++.... ... .+.|+++|+||+
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~-~~~----~~~~~i~v~nK~ 172 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSV-QLR----LGLPQIPVLNKA 172 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHH-HHH----cCCCEEEEEEhH
Confidence 57899999965532 2222222 22 89999999997644333321 1222111 111 167999999999
Q ss_pred CCCCCCceeecHHHHH------------------------HHHHhcC-CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 128 DVDGGNSRVVSEKKAK------------------------AWCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 128 Dl~~~~~~~~~~~~~~------------------------~~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
|+......+.....+. +.....+ ..+++++|++++.|+++++++|.+.+...
T Consensus 173 D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~ 249 (253)
T PRK13768 173 DLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGG 249 (253)
T ss_pred hhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCC
Confidence 9986533222211111 1112222 35899999999999999999999887543
No 279
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.61 E-value=3.2e-14 Score=105.48 Aligned_cols=166 Identities=17% Similarity=0.190 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--C------------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS--N------------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL 73 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~ 73 (185)
.-+|+++-+...|||||+..|+.+... . ....-.+.++-.+...+...++.+.++|||||.+|...
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE 84 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE 84 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence 358999999999999999999865432 1 11112234444444445556689999999999999999
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----- 148 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----- 148 (185)
....+.-+|++++++|+.+...... .-.+...+ .. +.+.|+|+||+|.+......+..+....|..-
T Consensus 85 VERvl~MVDgvlLlVDA~EGpMPQT-rFVlkKAl---~~----gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~de 156 (603)
T COG1217 85 VERVLSMVDGVLLLVDASEGPMPQT-RFVLKKAL---AL----GLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDE 156 (603)
T ss_pred hhhhhhhcceEEEEEEcccCCCCch-hhhHHHHH---Hc----CCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChh
Confidence 9999999999999999998433322 11111111 11 55779999999998875544444444444321
Q ss_pred cCCCcEEEeeeccC----------CCHHHHHHHHHHHHhhcCC
Q 029929 149 KGNIPYFETSAKEG----------FNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 149 ~~~~~~~~~s~~~~----------~~i~~~~~~i~~~~~~~~~ 181 (185)
.-+.|+++.|+..| .++..+|+.|++.++....
T Consensus 157 QLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 157 QLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred hCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 11479999999876 3699999999999987654
No 280
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=5.5e-15 Score=111.95 Aligned_cols=159 Identities=21% Similarity=0.234 Sum_probs=104.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC-----------------------------CCCccCcceeeeEEEEEEECCcE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-----------------------------SNQYKATIGADFLTKEVQFEDRL 56 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~ 56 (185)
...++++++|+..+|||||+.+++..-. .....+-.+.+.......++-..
T Consensus 175 k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 175 KDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred ccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 3568999999999999999988753211 01111223344444445555667
Q ss_pred EEEEEecCCChhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC-
Q 029929 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG- 132 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~- 132 (185)
..++++|+||+..|...+.....++|++++|+|++.. ..|+ ......+....++..+ -.-++|++||+|+++-
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd-~~gQtrEha~llr~Lg--i~qlivaiNKmD~V~Ws 331 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFD-PGGQTREHALLLRSLG--ISQLIVAINKMDLVSWS 331 (603)
T ss_pred eeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccC-CCCchHHHHHHHHHcC--cceEEEEeecccccCcc
Confidence 7899999999999999999999999999999999852 1222 1111111111112221 2257889999999873
Q ss_pred -CceeecHHHHHHHH-HhcC----CCcEEEeeeccCCCHHH
Q 029929 133 -NSRVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 133 -~~~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
+.++.....+..|. +..+ ...|++||+..|+|+-.
T Consensus 332 q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k 372 (603)
T KOG0458|consen 332 QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK 372 (603)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence 33444455555565 3333 35899999999998643
No 281
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.61 E-value=1.9e-14 Score=99.92 Aligned_cols=166 Identities=16% Similarity=0.109 Sum_probs=95.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc--CcceeeeEEEEEEECCcEEEEEEecCCChhhh-------ccccc----
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-------QSLGV---- 75 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~---- 75 (185)
++|+|+|.+||||||++|.+++........ ...+..........++ ..+.++||||-.+. .....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 589999999999999999999887654322 2223333333334444 57789999992211 11111
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec-----HHHHHHHHHhcC
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-----EKKAKAWCASKG 150 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~ 150 (185)
......|++++|+..+.. +.+. ...+..+...+...- -..++||+|..|.......+.. ...++.+....+
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~--~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~ 154 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEI--WKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCG 154 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGG--GGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHH--HhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcC
Confidence 123568999999999832 2222 233334444333211 1258899999987665331111 123555666565
Q ss_pred CCcEEEeeec------cCCCHHHHHHHHHHHHhhcCC
Q 029929 151 NIPYFETSAK------EGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 151 ~~~~~~~s~~------~~~~i~~~~~~i~~~~~~~~~ 181 (185)
-.+..++.+ ....+.++++.|-+.+..+..
T Consensus 155 -~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g 190 (212)
T PF04548_consen 155 -GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQENGG 190 (212)
T ss_dssp -TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred -CEEEEEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence 466666655 335688999998888887753
No 282
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.61 E-value=6.1e-15 Score=105.79 Aligned_cols=151 Identities=21% Similarity=0.184 Sum_probs=100.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC---------------------------------CCCccCcceeeeEEEEEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF---------------------------------SNQYKATIGADFLTKEVQF 52 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 52 (185)
...++.+..|+..-||||||-+|+...- ......+++.+..+..+
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyF-- 81 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYF-- 81 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeec--
Confidence 4568999999999999999999864311 00111123444444333
Q ss_pred CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC
Q 029929 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG 131 (185)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 131 (185)
.-...++.+.|||||+.+...+......||++|+++|+-.. -.+...+ ...+...+ ++ .+++.+||+||.+
T Consensus 82 sT~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G-vl~QTrR-Hs~I~sLL------GIrhvvvAVNKmDLvd 153 (431)
T COG2895 82 STEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG-VLEQTRR-HSFIASLL------GIRHVVVAVNKMDLVD 153 (431)
T ss_pred ccccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh-hHHHhHH-HHHHHHHh------CCcEEEEEEeeecccc
Confidence 34456788999999999999999999999999999999632 1121111 01111111 33 4778889999998
Q ss_pred CCc--eeecHHHHHHHHHhcC--CCcEEEeeeccCCCHH
Q 029929 132 GNS--RVVSEKKAKAWCASKG--NIPYFETSAKEGFNVE 166 (185)
Q Consensus 132 ~~~--~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~i~ 166 (185)
.++ .+....+...|+..++ ...++++||..|+|+-
T Consensus 154 y~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 154 YSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 632 3334455666777665 3578999999999863
No 283
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.59 E-value=5.6e-14 Score=102.72 Aligned_cols=108 Identities=13% Similarity=0.152 Sum_probs=70.4
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
++.+.|+||+|....... ....+|.++++.+....+..... ...+. ...-++|+||+|+......
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~---k~gi~---------E~aDIiVVNKaDl~~~~~a 212 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI---KKGIM---------ELADLIVINKADGDNKTAA 212 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH---Hhhhh---------hhhheEEeehhcccchhHH
Confidence 467899999996532222 46679999999775443333222 22122 2234899999999865333
Q ss_pred eecHHHHHHHHHhc------CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 136 VVSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 136 ~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.....++....... +..+++.+||.++.|++++++.|.+.+..
T Consensus 213 ~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~ 261 (332)
T PRK09435 213 RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAA 261 (332)
T ss_pred HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33334444433321 22589999999999999999999997653
No 284
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.59 E-value=5.9e-14 Score=99.25 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=72.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc--c--------cc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ--S--------LG 74 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~--~--------~~ 74 (185)
...++|+|+|.+|+|||||+|++++...... .....+.......... .+..+.+|||||-.+.. . ..
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~--~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I 106 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTV--DGFKLNIIDTPGLLESVMDQRVNRKILSSI 106 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEE--CCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence 4569999999999999999999998765422 1222222222222222 34678999999944331 0 11
Q ss_pred cchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
..++. ..|++++|..++....-..-...++.+...+.. .. -.++++|+||+|...+
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~-~i-~~~~ivV~T~~d~~~p 164 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGP-SI-WRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhCh-hh-HhCEEEEEeCCccCCC
Confidence 22332 578888887666432111112333444433221 11 2369999999998654
No 285
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.58 E-value=1e-13 Score=105.15 Aligned_cols=165 Identities=19% Similarity=0.303 Sum_probs=118.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
.+..+++.|+|+.++|||.+++++.++.+......+....+....+...+....+.+.|.+-. ......... ..||++
T Consensus 422 ~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~ 499 (625)
T KOG1707|consen 422 DRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVA 499 (625)
T ss_pred cceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeE
Confidence 456799999999999999999999999888766677777777777766666666777776653 222222222 679999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
+++||.+++.+++.+...+...... ..+|+++|++|+|+.... +...-+...++...+--+.+.+|.+. .+
T Consensus 500 ~~~YDsS~p~sf~~~a~v~~~~~~~------~~~Pc~~va~K~dlDe~~--Q~~~iqpde~~~~~~i~~P~~~S~~~-~~ 570 (625)
T KOG1707|consen 500 CLVYDSSNPRSFEYLAEVYNKYFDL------YKIPCLMVATKADLDEVP--QRYSIQPDEFCRQLGLPPPIHISSKT-LS 570 (625)
T ss_pred EEecccCCchHHHHHHHHHHHhhhc------cCCceEEEeeccccchhh--hccCCChHHHHHhcCCCCCeeeccCC-CC
Confidence 9999999999998876554433211 378999999999997652 22222236777777655667777775 22
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
-.++|..|+.++...+
T Consensus 571 s~~lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 571 SNELFIKLATMAQYPH 586 (625)
T ss_pred CchHHHHHHHhhhCCC
Confidence 2889999988876543
No 286
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.58 E-value=5.5e-14 Score=113.41 Aligned_cols=118 Identities=17% Similarity=0.111 Sum_probs=78.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------------ccCcceeeeEEE--EEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------------YKATIGADFLTK--EVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------------~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~ 67 (185)
.+..+|+++|+.++|||||+.+|+....... .....+...... .+.+.+..+.++++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 4557899999999999999999975321100 001111111111 2233445678999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.++.......++.+|++|+|+|+........ ...+...... +.|.++++||+|...
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t-~~~~~~~~~~-------~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT-ETVLRQALRE-------RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccH-HHHHHHHHHc-------CCCeEEEEECchhhc
Confidence 9988888888999999999999886432222 2222222111 457899999999864
No 287
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.58 E-value=6.7e-14 Score=99.61 Aligned_cols=165 Identities=22% Similarity=0.322 Sum_probs=117.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC--CcEEEEEEecCCChhhhcccccchhcc---Cc-
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE--DRLFTLQIWDTAGQERFQSLGVAFYRG---AD- 82 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~---~d- 82 (185)
-+|+|+|..++||||||.+|.+.. ...+..+..+.+..+.-+ +...++.+|-+-|..-...+....+.. ++
T Consensus 53 k~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~aet 129 (473)
T KOG3905|consen 53 KNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAET 129 (473)
T ss_pred CeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccce
Confidence 489999999999999999998776 345556666655555433 234577889888866666665555432 33
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCC-----------------------------------------------
Q 029929 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSD----------------------------------------------- 114 (185)
Q Consensus 83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~----------------------------------------------- 114 (185)
++|++.|.++| .-++.+++|..-+.++.....
T Consensus 130 lviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~l 209 (473)
T KOG3905|consen 130 LVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVL 209 (473)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccc
Confidence 67889999998 555667777766444322211
Q ss_pred ----------CCCCcEEEEEeCCCCCCC---------CceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 115 ----------PENFPFVVLGNKTDVDGG---------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 115 ----------~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+.++|+++|+||||.... ......+..++.|+.+++ +..+++|.++..|++-+..+|...
T Consensus 210 lPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~G-aaLiyTSvKE~KNidllyKYivhr 288 (473)
T KOG3905|consen 210 LPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYG-AALIYTSVKETKNIDLLYKYIVHR 288 (473)
T ss_pred cccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcC-ceeEEeecccccchHHHHHHHHHH
Confidence 113399999999998431 123344556788888888 899999999999999999999887
Q ss_pred Hh
Q 029929 176 AL 177 (185)
Q Consensus 176 ~~ 177 (185)
..
T Consensus 289 ~y 290 (473)
T KOG3905|consen 289 SY 290 (473)
T ss_pred hc
Confidence 64
No 288
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.57 E-value=1.1e-13 Score=101.40 Aligned_cols=126 Identities=13% Similarity=0.145 Sum_probs=84.8
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
....+.+||++|+...+..|..++..++++|+|+|.++.+. ...+...+..+...+......++|+++++||.
T Consensus 159 ~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~ 238 (317)
T cd00066 159 KNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKK 238 (317)
T ss_pred cceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccCh
Confidence 35678899999999999999999999999999999987311 12233333334444444344578999999999
Q ss_pred CCCCC--------------CceeecHHHHHHHHHh----c-----CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 128 DVDGG--------------NSRVVSEKKAKAWCAS----K-----GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 128 Dl~~~--------------~~~~~~~~~~~~~~~~----~-----~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|+..+ .......+.+..+... . ..+-...++|.+..+++.+++.+.+.+..+.
T Consensus 239 D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 239 DLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 96331 0111233333333321 1 1234567889999999999999998887654
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.57 E-value=2.3e-14 Score=116.94 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=80.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC--C--------------CccCcceeeeEEEEEEE--------------CC
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS--N--------------QYKATIGADFLTKEVQF--------------ED 54 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~--~--------------~~~~~~~~~~~~~~~~~--------------~~ 54 (185)
..+..+|+|+|+.++|||||+++|+..... . ......+.........+ .+
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 455689999999999999999999754321 0 01111122211122222 22
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
..+.++++||||+.+|.......++.+|++|+|+|+...-.... ...+.... .. ++|+++++||+|..
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t-~~~~~~~~----~~---~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQT-ETVLRQAL----GE---RIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccH-HHHHHHHH----HC---CCCEEEEEECCccc
Confidence 36788999999999999988899999999999999987433322 22222222 11 67999999999987
No 290
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.57 E-value=6.8e-14 Score=96.02 Aligned_cols=104 Identities=15% Similarity=0.151 Sum_probs=63.8
Q ss_pred EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 136 (185)
....++++.|..-..... . .-+|.+|.|+|+.+.++... ....++ ...-++++||+|+.+.. .
T Consensus 92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~~qi----------~~ad~~~~~k~d~~~~~--~ 154 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGGPGI----------TRSDLLVINKIDLAPMV--G 154 (199)
T ss_pred CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhHhHh----------hhccEEEEEhhhccccc--c
Confidence 455677888832111111 1 12688999999986544221 111111 11238999999998531 1
Q ss_pred ecHHHHHHHHHh-cCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 137 VSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 137 ~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
...+...+.... .+..+++++|+++|.|+++++++|.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 155 ADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred ccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 222232333332 34589999999999999999999998764
No 291
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.56 E-value=1.4e-13 Score=96.41 Aligned_cols=142 Identities=18% Similarity=0.178 Sum_probs=83.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
..+..|+++|++|+|||||++.+.+...........+. . .+ .......+.++||||.- .......+.+|+++
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvVl 108 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLVL 108 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EE-EecCCceEEEEeCCchH---HHHHHHHHhcCEEE
Confidence 34578999999999999999999865322111111111 1 11 11234577899999954 22233457899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCCCCc-eeecHHHHHH-HHH-hcCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDGGNS-RVVSEKKAKA-WCA-SKGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~~~~-~~~~~~~~~~-~~~-~~~~~~~~~~s~~~ 161 (185)
+++|++....... ..++..+.. . +.|. ++|+||.|+.+... .....+.+++ +.. .....+++++||++
T Consensus 109 lviDa~~~~~~~~-~~i~~~l~~----~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 109 LLIDASFGFEMET-FEFLNILQV----H---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred EEEecCcCCCHHH-HHHHHHHHH----c---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 9999986433222 222222221 1 4574 45999999975321 1122233333 221 23457999999998
Q ss_pred CC
Q 029929 162 GF 163 (185)
Q Consensus 162 ~~ 163 (185)
+-
T Consensus 181 ~~ 182 (225)
T cd01882 181 HG 182 (225)
T ss_pred CC
Confidence 73
No 292
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.56 E-value=6.9e-14 Score=100.54 Aligned_cols=142 Identities=16% Similarity=0.190 Sum_probs=79.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------cCcceeeeEEEEEEECCcEEEEEEecCCChh--------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------KATIGADFLTKEVQFEDRLFTLQIWDTAGQE-------- 68 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-------- 68 (185)
..|+|+|+|..|+|||||+|.|++....... ..+...........-.+..+.++++||||-.
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4699999999999999999999987654321 1223334444445556677899999999911
Q ss_pred ----------hhcc--------cc-cchhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 69 ----------RFQS--------LG-VAFYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 69 ----------~~~~--------~~-~~~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
.+.. .+ ...=...|+++|.++++.... ... ...++.+. . .+++|.|+.|+|
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~Ls----~----~vNvIPvIaKaD 153 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRLS----K----RVNVIPVIAKAD 153 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHHT----T----TSEEEEEESTGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHhc----c----cccEEeEEeccc
Confidence 0000 00 011135799999999875321 122 23334332 1 568999999999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
.....+....++.+..-....+ ++++...
T Consensus 154 ~lt~~el~~~k~~i~~~l~~~~-I~~f~f~ 182 (281)
T PF00735_consen 154 TLTPEELQAFKQRIREDLEENN-IKIFDFP 182 (281)
T ss_dssp GS-HHHHHHHHHHHHHHHHHTT---S----
T ss_pred ccCHHHHHHHHHHHHHHHHHcC-ceeeccc
Confidence 8875545555555555555555 5555533
No 293
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=5.6e-14 Score=109.16 Aligned_cols=160 Identities=20% Similarity=0.183 Sum_probs=107.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhhh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQERF 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~~ 70 (185)
+..=||++|+..+|||-|+..+.+.........+++..+....+... -.-..+.++||||++.|
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsF 553 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESF 553 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhh
Confidence 34568999999999999999998877665555555443333333221 11134678899999999
Q ss_pred cccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC---ceee-------
Q 029929 71 QSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN---SRVV------- 137 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~~------- 137 (185)
..++......||.+|+|+|+.+ +.+.+.+. .+. ..+.|+||.+||+|....- +...
T Consensus 554 tnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR-------~rktpFivALNKiDRLYgwk~~p~~~i~~~lkk 622 (1064)
T KOG1144|consen 554 TNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR-------MRKTPFIVALNKIDRLYGWKSCPNAPIVEALKK 622 (1064)
T ss_pred hhhhhccccccceEEEEeehhccCCcchhHHHH----HHH-------hcCCCeEEeehhhhhhcccccCCCchHHHHHHH
Confidence 9999999999999999999987 44444332 111 1278999999999964320 0000
Q ss_pred --------cHH----HHHHHHHh-cC------------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 138 --------SEK----KAKAWCAS-KG------------NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 138 --------~~~----~~~~~~~~-~~------------~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
... .+.+|... ++ .+.++++||..|+|+.+|+-+|++...
T Consensus 623 Q~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 623 QKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQ 687 (1064)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHH
Confidence 000 11122211 00 246889999999999999999988654
No 294
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.55 E-value=4.1e-14 Score=94.04 Aligned_cols=149 Identities=20% Similarity=0.146 Sum_probs=83.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE---------------EEE--------------------E
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK---------------EVQ--------------------F 52 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~---------------~~~--------------------~ 52 (185)
.++|.|.|++|||||+|+.+++..-.........+-+.++. .+. .
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 48999999999999999999865432111111111111110 000 0
Q ss_pred CCcEEEEEEecCCChhhhcccccchhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC--CCcEEEEEeCCCC
Q 029929 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE--NFPFVVLGNKTDV 129 (185)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~Dl 129 (185)
......+.|++.+|. ... .....-.| .-|+|+|+...+..- .+..| ...=++|+||.|+
T Consensus 93 ~~~~~Dll~iEs~GN---L~~-~~sp~L~d~~~v~VidvteGe~~P--------------~K~gP~i~~aDllVInK~DL 154 (202)
T COG0378 93 DFPDLDLLFIESVGN---LVC-PFSPDLGDHLRVVVIDVTEGEDIP--------------RKGGPGIFKADLLVINKTDL 154 (202)
T ss_pred cCCcCCEEEEecCcc---eec-ccCcchhhceEEEEEECCCCCCCc--------------ccCCCceeEeeEEEEehHHh
Confidence 001134555566661 111 11112234 788899988532111 00000 1134899999999
Q ss_pred CCCCceeecHHHHHHHH-HhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 130 DGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
.+...+ ..+....-+ +..+..+|+++|+++|+|++++++|+....
T Consensus 155 a~~v~~--dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 155 APYVGA--DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred HHHhCc--cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 886333 223333222 234569999999999999999999998754
No 295
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.54 E-value=9.2e-15 Score=102.75 Aligned_cols=114 Identities=18% Similarity=0.174 Sum_probs=59.4
Q ss_pred EEEEecCCChhhhcccccchh--------ccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 58 TLQIWDTAGQERFQSLGVAFY--------RGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 58 ~~~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
...++|||||-++...+.... ...-++++++|+....+... +..++..+.-+.+. +.|.+.|+||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~----~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRL----ELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHH----TSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhC----CCCEEEeeeccC
Confidence 567899999877655543332 34558889999875433222 22333332222222 679999999999
Q ss_pred CCCCCceee------------------cHHHHHHHHH---hcCCC-cEEEeeeccCCCHHHHHHHHHHHH
Q 029929 129 VDGGNSRVV------------------SEKKAKAWCA---SKGNI-PYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 129 l~~~~~~~~------------------~~~~~~~~~~---~~~~~-~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
+.... .+. ......+++. ..+.. +++++|+.+++|+.+++..+-+++
T Consensus 168 l~~~~-~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKY-LEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HH-HHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 98731 000 0111112222 23344 899999999999999999887654
No 296
>PTZ00416 elongation factor 2; Provisional
Probab=99.54 E-value=6e-14 Score=114.36 Aligned_cols=117 Identities=18% Similarity=0.176 Sum_probs=78.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CccCcceeeeEEEEEEEC--------CcEEEEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKATIGADFLTKEVQFE--------DRLFTLQI 61 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 61 (185)
....+|+++|+.++|||||+++|+...... ....+.+.........+. +..+.+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 345699999999999999999998632110 011111111111122222 22567899
Q ss_pred ecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 62 WDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 62 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+||||+.++.......++.+|++|+|+|+...-.... ...+..+.. . ++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~----~---~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ----E---RIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH----c---CCCEEEEEEChhhh
Confidence 9999999998888889999999999999987433222 222333321 1 57999999999987
No 297
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.3e-13 Score=101.72 Aligned_cols=154 Identities=20% Similarity=0.091 Sum_probs=109.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
-|+..|+-.-|||||+.++++.... +....+++.+....... .....+.|+|.||++++-......+...|.+++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~--~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRK--LEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEecc--CCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 4677899999999999999876533 33344454554444443 344588999999999999998888899999999
Q ss_pred EEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 87 VYDVNV---MKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
|+++++ +.+.+.+. +.+.+ ++ ..++|+||+|..+....+...+++..... +.+.+++.+|+++|
T Consensus 80 vV~~deGl~~qtgEhL~-----iLdll------gi~~giivltk~D~~d~~r~e~~i~~Il~~l~-l~~~~i~~~s~~~g 147 (447)
T COG3276 80 VVAADEGLMAQTGEHLL-----ILDLL------GIKNGIIVLTKADRVDEARIEQKIKQILADLS-LANAKIFKTSAKTG 147 (447)
T ss_pred EEeCccCcchhhHHHHH-----HHHhc------CCCceEEEEeccccccHHHHHHHHHHHHhhcc-cccccccccccccC
Confidence 999975 33433321 22222 33 35999999999875422222233333333 44688999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 029929 163 FNVEAAFECIAKNAL 177 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~ 177 (185)
+|++++.+.|.....
T Consensus 148 ~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 148 RGIEELKNELIDLLE 162 (447)
T ss_pred CCHHHHHHHHHHhhh
Confidence 999999999999884
No 298
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.53 E-value=3.6e-13 Score=96.85 Aligned_cols=124 Identities=17% Similarity=0.124 Sum_probs=71.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-------cccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-------LGVA 76 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~ 76 (185)
+...++|+++|.+|+||||++|++++..... ......+.......... .+..+.++||||..+... ....
T Consensus 35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~--~G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR--AGFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred cccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE--CCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 4567899999999999999999999876432 11122222222222222 346889999999443211 1111
Q ss_pred hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 77 FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 77 ~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
++ ...|+++||...+.....+.-...+..+...+.. .. -.+.|+++|+.|....
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~i-w~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DI-WRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hh-hccEEEEEECCccCCC
Confidence 11 2589999996654321111112333444433321 11 2368999999997643
No 299
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.53 E-value=7e-14 Score=99.42 Aligned_cols=156 Identities=15% Similarity=0.131 Sum_probs=109.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-h--------hhhcccccchh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-Q--------ERFQSLGVAFY 78 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-~--------~~~~~~~~~~~ 78 (185)
..-|.|+|.+|||||||+++|+.....+...-+.+.+++.......... .+.+.||.| . ..|... ...+
T Consensus 178 ~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~-~vlltDTvGFisdLP~~LvaAF~AT-LeeV 255 (410)
T KOG0410|consen 178 SPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN-FVLLTDTVGFISDLPIQLVAAFQAT-LEEV 255 (410)
T ss_pred CceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc-EEEEeechhhhhhCcHHHHHHHHHH-HHHH
Confidence 3578999999999999999999887777777778888877777766554 566779999 1 122222 2234
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
..+|+++.|.|+++|+.-+.....+.-+....-...+....++=|-||+|........+ . .-.+.+|
T Consensus 256 aeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E----------~---n~~v~is 322 (410)
T KOG0410|consen 256 AEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE----------K---NLDVGIS 322 (410)
T ss_pred hhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc----------c---CCccccc
Confidence 67999999999999987766666656554433221222223567789998765421111 1 2258899
Q ss_pred eccCCCHHHHHHHHHHHHhh
Q 029929 159 AKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (185)
+.+|+|++++++.+-..+..
T Consensus 323 altgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 323 ALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred cccCccHHHHHHHHHHHhhh
Confidence 99999999999988776653
No 300
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.52 E-value=1.1e-12 Score=96.65 Aligned_cols=83 Identities=24% Similarity=0.171 Sum_probs=60.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE---------------EEEEEecCCChhh----
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL---------------FTLQIWDTAGQER---- 69 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~---- 69 (185)
++|+++|.||+|||||+|++++........|+++.++....+.+.+.. ..+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 689999999999999999999988555555776666665555554421 2588999999322
Q ss_pred ---hcccccchhccCcEEEEEEECC
Q 029929 70 ---FQSLGVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 70 ---~~~~~~~~~~~~d~~i~v~d~~ 91 (185)
........++.+|++++|+|+.
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112233457899999999984
No 301
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.51 E-value=4.3e-13 Score=99.18 Aligned_cols=125 Identities=13% Similarity=0.129 Sum_probs=82.7
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
...+.+||.+|+...+..|..++..++++|+|+|.++-+ ....+...+..+...+......+.|+++++||.|
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D 262 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKID 262 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHH
Confidence 456789999999999999999999999999999999632 1122333333344444444445789999999999
Q ss_pred CCCCC-------------ceeecHHHHHHHHH----hc-C-----CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 129 VDGGN-------------SRVVSEKKAKAWCA----SK-G-----NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 129 l~~~~-------------~~~~~~~~~~~~~~----~~-~-----~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+..+. ......+.+..+.. .. . .+-.+.++|.+..++..+++.+...+..++
T Consensus 263 ~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~~ 337 (342)
T smart00275 263 LFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQRN 337 (342)
T ss_pred hHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHHH
Confidence 74310 00012222222221 11 1 134567889999999999999888877654
No 302
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.49 E-value=3.3e-13 Score=99.50 Aligned_cols=164 Identities=13% Similarity=0.163 Sum_probs=83.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CC--ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccch-----
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQ--YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAF----- 77 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----- 77 (185)
..+++|+|+|.+|+|||||||+|.+-... +. .......+.....+.... ...+++||.||..........|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~-~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPK-FPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS--TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCC-CCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 45689999999999999999999753322 11 122222333344444332 2368999999954433222223
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC--CC-------CCceeecHHHHHHHHHh
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV--DG-------GNSRVVSEKKAKAWCAS 148 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl--~~-------~~~~~~~~~~~~~~~~~ 148 (185)
+...|.+|++.+..-.+.- ..+...+.++ ++|+.+|-||+|. .+ ...++...+.+++.+..
T Consensus 112 ~~~yD~fiii~s~rf~~nd---v~La~~i~~~-------gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~ 181 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTEND---VQLAKEIQRM-------GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLE 181 (376)
T ss_dssp GGG-SEEEEEESSS--HHH---HHHHHHHHHT-------T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCCCchhh---HHHHHHHHHc-------CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHH
Confidence 4568887776654322111 2333444433 6799999999995 11 11112223333333322
Q ss_pred ----c--CCCcEEEeeeccC--CCHHHHHHHHHHHHhhcC
Q 029929 149 ----K--GNIPYFETSAKEG--FNVEAAFECIAKNALKNE 180 (185)
Q Consensus 149 ----~--~~~~~~~~s~~~~--~~i~~~~~~i~~~~~~~~ 180 (185)
. ...++|-+|+.+- .++..+.+.|.+.++..+
T Consensus 182 ~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 182 NLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 1 2347888998864 468888888887776543
No 303
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.48 E-value=1.1e-12 Score=95.63 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=66.0
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
++.+.|+||+|..... ......+|.++++.... +.+.+......+. .+|.++++||+|+......
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l~---------~~~~ivv~NK~Dl~~~~~~ 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGLM---------EIADIYVVNKADGEGATNV 190 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHHh---------hhccEEEEEcccccchhHH
Confidence 5678899999944222 23456788888885444 3344433333332 5578999999999864221
Q ss_pred eecHHH----HHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 136 VVSEKK----AKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 136 ~~~~~~----~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
...... ...+.... ...+++++|++++.|+++++++|.+...
T Consensus 191 ~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 110111 11111111 1236999999999999999999988643
No 304
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.48 E-value=1.2e-12 Score=90.67 Aligned_cols=154 Identities=16% Similarity=0.167 Sum_probs=84.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC------------CccCc-c-eeeeEEEEEE------------------EC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN------------QYKAT-I-GADFLTKEVQ------------------FE 53 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~------------~~~~~-~-~~~~~~~~~~------------------~~ 53 (185)
..+..|.++|+.|||||||++++....... ..... . .......... ..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~ 99 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLP 99 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhc
Confidence 357899999999999999999987541100 00000 0 0000000000 00
Q ss_pred CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 133 (185)
.....+.++||.|.-.... .+.-..+..+.|+|+.+.+... ......+ ..|.++++||+|+....
T Consensus 100 ~~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~~~~~----------~~a~iiv~NK~Dl~~~~ 164 (207)
T TIGR00073 100 LDDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKYPGMF----------KEADLIVINKADLAEAV 164 (207)
T ss_pred cCCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhhHhHH----------hhCCEEEEEHHHccccc
Confidence 0123566778877211111 1112345566788887543211 1111111 44789999999997531
Q ss_pred ceeecHHHHHHHHHh-cCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 134 SRVVSEKKAKAWCAS-KGNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 134 ~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
............. .+.++++++|++++.|++++++++.+..
T Consensus 165 --~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 165 --GFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred --hhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 1112222222222 3458999999999999999999998753
No 305
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.48 E-value=1.8e-13 Score=92.96 Aligned_cols=166 Identities=20% Similarity=0.294 Sum_probs=106.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----cccchhccCc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-----LGVAFYRGAD 82 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----~~~~~~~~~d 82 (185)
-||+++|..||||||+-..++.+... +...++.+.++......+-+. ..+.+||.+|++.+.. .....++..+
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn-l~LnlwDcGgqe~fmen~~~~q~d~iF~nV~ 83 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN-LVLNLWDCGGQEEFMENYLSSQEDNIFRNVQ 83 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh-heeehhccCCcHHHHHHHHhhcchhhheehe
Confidence 58999999999999987766644432 344556666777777666543 5788999999885432 3456778999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC---CCcEEEeee
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG---NIPYFETSA 159 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~~~~s~ 159 (185)
++++|+|+...+-...+..+...+...+... +...+.+.++|.|+...+.++...+.-........ .+..+++|.
T Consensus 84 vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi 161 (295)
T KOG3886|consen 84 VLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI 161 (295)
T ss_pred eeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence 9999999998765555444333222222222 24578899999999987666555544443333222 256677776
Q ss_pred ccCCCHHHHHHHHHHHHhh
Q 029929 160 KEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~ 178 (185)
.+. .+-..+..+.....+
T Consensus 162 wDe-tl~KAWS~iv~~lip 179 (295)
T KOG3886|consen 162 WDE-TLYKAWSSIVYNLIP 179 (295)
T ss_pred hhH-HHHHHHHHHHHhhCC
Confidence 643 334444455444443
No 306
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.48 E-value=2.5e-12 Score=98.06 Aligned_cols=168 Identities=22% Similarity=0.341 Sum_probs=114.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC--cEEEEEEecCCChhhhcccccchhcc---C-c
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED--RLFTLQIWDTAGQERFQSLGVAFYRG---A-D 82 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~---~-d 82 (185)
-.|+|+|..++|||||+.+|.+.. .+.++.+.+|....+.-++ ....+.+|.+.|...+..+....++. . -
T Consensus 26 k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t 102 (472)
T PF05783_consen 26 KSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPNT 102 (472)
T ss_pred ceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccce
Confidence 589999999999999999987543 3456677777766654332 23468999998866666666555543 2 3
Q ss_pred EEEEEEECCChhhH-HHHHHHHHHHHhh-------------------------cCC------------------------
Q 029929 83 CCVLVYDVNVMKSF-DNLNNWREEFLIQ-------------------------ASP------------------------ 112 (185)
Q Consensus 83 ~~i~v~d~~~~~~~-~~~~~~~~~~~~~-------------------------~~~------------------------ 112 (185)
++|+|+|.+.|..+ +.+..|+..+..+ ...
T Consensus 103 ~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~~ 182 (472)
T PF05783_consen 103 LVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDESV 182 (472)
T ss_pred EEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccccccc
Confidence 77889999987544 2334444332111 000
Q ss_pred ---------CCCCCCcEEEEEeCCCCCCC---------CceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 113 ---------SDPENFPFVVLGNKTDVDGG---------NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 113 ---------~~~~~~p~iiv~nK~Dl~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
..+.++|++||++|+|.... .......+.++.++..++ +.++++|.+...+++-+..+|..
T Consensus 183 ~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yG-AsL~yts~~~~~n~~~L~~yi~h 261 (472)
T PF05783_consen 183 LLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYG-ASLIYTSVKEEKNLDLLYKYILH 261 (472)
T ss_pred cCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcC-CeEEEeeccccccHHHHHHHHHH
Confidence 00124699999999997431 112344556777888887 89999999999999999999888
Q ss_pred HHhhcC
Q 029929 175 NALKNE 180 (185)
Q Consensus 175 ~~~~~~ 180 (185)
.+....
T Consensus 262 ~l~~~~ 267 (472)
T PF05783_consen 262 RLYGFP 267 (472)
T ss_pred HhccCC
Confidence 876554
No 307
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=8.3e-13 Score=97.43 Aligned_cols=117 Identities=19% Similarity=0.218 Sum_probs=84.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCC----------------CC----CccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKF----------------SN----QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~----------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
.-..++|.+|.+|||||-++|+--.. .. ......+....++.+.++..+..++++|||||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 34678999999999999999752111 00 11123456777888888888889999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
++|....-..+..+|.+++|+|+...-.... ..+.+.|+.. ++|++=++||.|....
T Consensus 92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR---~iPI~TFiNKlDR~~r 148 (528)
T COG4108 92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLR---DIPIFTFINKLDREGR 148 (528)
T ss_pred cccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhc---CCceEEEeeccccccC
Confidence 9998888888899999999999986322221 2223333333 8899999999996543
No 308
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.44 E-value=1.4e-12 Score=87.48 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=41.5
Q ss_pred EEEEecCCChh----hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 58 TLQIWDTAGQE----RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 58 ~~~~~D~~g~~----~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
.+.++||||.. ........+++.+|++|+|.++....+-.....+.+.. ... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~----~~~---~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQML----DPD---KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHH----TTT---CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHh----cCC---CCeEEEEEcCC
Confidence 46899999943 23355677889999999999999855544433333333 222 33589999984
No 309
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.43 E-value=5.2e-12 Score=93.52 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=91.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC----CCC------------CCccCc---ceeeeEE---EEEE---ECCcEEEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR----KFS------------NQYKAT---IGADFLT---KEVQ---FEDRLFTLQ 60 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~----~~~------------~~~~~~---~~~~~~~---~~~~---~~~~~~~~~ 60 (185)
...+-|.|+|+.++|||||+++|.+. ... +...++ +++++.. ..+. .++....+.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34588999999999999999999987 222 111222 2222222 1122 234557889
Q ss_pred EecCCChhh--------hcc---------------------cccchhc-cCcEEEEEE-ECCC----hhhHHH-HHHHHH
Q 029929 61 IWDTAGQER--------FQS---------------------LGVAFYR-GADCCVLVY-DVNV----MKSFDN-LNNWRE 104 (185)
Q Consensus 61 ~~D~~g~~~--------~~~---------------------~~~~~~~-~~d~~i~v~-d~~~----~~~~~~-~~~~~~ 104 (185)
++||+|-.. ... =....++ ++|..|+|. |.+- ++.+.. -.++..
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 999999111 000 0122344 899999998 7741 112222 245555
Q ss_pred HHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--CCHHHHHHHHH
Q 029929 105 EFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIA 173 (185)
Q Consensus 105 ~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~~~~~i~ 173 (185)
.+.+. ++|+++++||+|-... ...+....+...++ .+++.+|+..- +.+..++..+.
T Consensus 175 eLk~~-------~kPfiivlN~~dp~~~----et~~l~~~l~eky~-vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 175 ELKEL-------NKPFIILLNSTHPYHP----ETEALRQELEEKYD-VPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred HHHhc-------CCCEEEEEECcCCCCc----hhHHHHHHHHHHhC-CceEEEEHHHcCHHHHHHHHHHHH
Confidence 55433 7899999999994322 13333445545566 78888887643 34555554443
No 310
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.41 E-value=1.6e-11 Score=89.10 Aligned_cols=144 Identities=14% Similarity=0.197 Sum_probs=91.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCC----------ccCcceeeeEEEEEEECCcEEEEEEecCCChh-----
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ----------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----- 68 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----- 68 (185)
++...|+|+++|+.|+|||||+|+|++...... ..++.........+.-++....++++||||-.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idN 98 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDN 98 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccc
Confidence 345679999999999999999999998743221 23444455555555556677889999999911
Q ss_pred -------------hhccc--------cc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929 69 -------------RFQSL--------GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (185)
Q Consensus 69 -------------~~~~~--------~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 125 (185)
.+... +. ..=..+|+++|.+.++...--..=...+..+.. .+-+|-|+.
T Consensus 99 s~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~--------~vNlIPVI~ 170 (373)
T COG5019 99 SKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK--------RVNLIPVIA 170 (373)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc--------ccCeeeeee
Confidence 11110 01 011358999999987642111110223333322 456899999
Q ss_pred CCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 126 KTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 126 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
|+|..-..+.....+.+.+.....+ +++|.
T Consensus 171 KaD~lT~~El~~~K~~I~~~i~~~n-I~vf~ 200 (373)
T COG5019 171 KADTLTDDELAEFKERIREDLEQYN-IPVFD 200 (373)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhC-CceeC
Confidence 9999876666666666766666665 77763
No 311
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=7.2e-12 Score=88.29 Aligned_cols=166 Identities=17% Similarity=0.158 Sum_probs=106.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC---C-------------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR---K-------------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
....||..+|+.+-|||||..+++.- . .+.... .+.++....+.++-.......+|+||+.+
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~--rGITIntahveyet~~rhyahVDcPGHaD 87 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKA--RGITINTAHVEYETANRHYAHVDCPGHAD 87 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhh--cCceeccceeEEecCCceEEeccCCChHH
Confidence 35689999999999999999887531 1 112222 33444445555554445556779999999
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHH
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCA 147 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~ 147 (185)
+-..+.....+.|++|+|+++.+......-+..+ ....-++| +++++||+|+.+..+ .+.-..+.+.+..
T Consensus 88 YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--------larqvGvp~ivvflnK~Dmvdd~ellelVemEvreLLs 159 (394)
T COG0050 88 YVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--------LARQVGVPYIVVFLNKVDMVDDEELLELVEMEVRELLS 159 (394)
T ss_pred HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--------hhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHHHH
Confidence 9999988999999999999999843332221111 11111666 556779999997432 2333445666666
Q ss_pred hcC----CCcEEEeeeccC-C-------CHHHHHHHHHHHHhhcCC
Q 029929 148 SKG----NIPYFETSAKEG-F-------NVEAAFECIAKNALKNEP 181 (185)
Q Consensus 148 ~~~----~~~~~~~s~~~~-~-------~i~~~~~~i~~~~~~~~~ 181 (185)
.++ ..|++.-|+..- + .+.+|++.+-..++...+
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per 205 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPER 205 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCC
Confidence 554 467887777642 1 256777777666665543
No 312
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-11 Score=90.51 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=88.5
Q ss_pred EECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 51 QFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 51 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
.+.-....+.++|.+||...+.-|.+++.+++++|+|++.++-+ ....+..-+..+...+...--.+.++|++
T Consensus 189 ~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLF 268 (354)
T KOG0082|consen 189 EFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILF 268 (354)
T ss_pred EEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEE
Confidence 33334467788999999999999999999999999999998622 22334444555666666655668899999
Q ss_pred EeCCCCCCCC-------------ceeecHHHHHHHHHh--------c-CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 124 GNKTDVDGGN-------------SRVVSEKKAKAWCAS--------K-GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 124 ~nK~Dl~~~~-------------~~~~~~~~~~~~~~~--------~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+||.||..+- .-....+.+..+... . ..+-...+.|.+-.+++.+|+...+.+...+
T Consensus 269 LNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 269 LNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred eecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 9999984320 011223333332221 1 1123455688889999999999998887654
No 313
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.40 E-value=3e-12 Score=90.71 Aligned_cols=96 Identities=18% Similarity=0.203 Sum_probs=73.9
Q ss_pred hhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC 146 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (185)
+++..+...+++++|++++|+|+.++. +++.+.+|+..+.. .++|+++|+||+||.+. .....+....+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~-------~~i~~vIV~NK~DL~~~--~~~~~~~~~~~- 93 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA-------QNIEPIIVLNKIDLLDD--EDMEKEQLDIY- 93 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEECcccCCC--HHHHHHHHHHH-
Confidence 556667777899999999999999887 88888888875532 26799999999999753 22222334333
Q ss_pred HhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 147 ASKGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 147 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
...+ ++++++||++|.|++++++.+..
T Consensus 94 ~~~g-~~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 94 RNIG-YQVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHCC-CeEEEEecCCchhHHHHHhhhcC
Confidence 3344 78999999999999999988753
No 314
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.37 E-value=1e-10 Score=80.87 Aligned_cols=89 Identities=17% Similarity=0.203 Sum_probs=68.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh------hh-cccccchh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE------RF-QSLGVAFY 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~------~~-~~~~~~~~ 78 (185)
+.--+|+++|-|.+|||||+..++..........+++.+.....+.+++. .+++.|.||.- .- ........
T Consensus 60 sGdaRValIGfPSVGKStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~ga--~IQllDLPGIieGAsqgkGRGRQviavA 137 (364)
T KOG1486|consen 60 SGDARVALIGFPSVGKSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNGA--NIQLLDLPGIIEGASQGKGRGRQVIAVA 137 (364)
T ss_pred cCCeEEEEecCCCccHHHHHHHhhcchhhhhceeeeEEEeecceEEecCc--eEEEecCcccccccccCCCCCceEEEEe
Confidence 34469999999999999999999987766666677778888888888774 56788999922 21 22344556
Q ss_pred ccCcEEEEEEECCChhhH
Q 029929 79 RGADCCVLVYDVNVMKSF 96 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~ 96 (185)
+.+|++++|.|++..+.-
T Consensus 138 rtaDlilMvLDatk~e~q 155 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQ 155 (364)
T ss_pred ecccEEEEEecCCcchhH
Confidence 789999999999875543
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=9e-12 Score=98.94 Aligned_cols=120 Identities=18% Similarity=0.156 Sum_probs=83.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------------cCcceeeeEEEEEEECCc-EEEEEEecCCChh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KATIGADFLTKEVQFEDR-LFTLQIWDTAGQE 68 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~ 68 (185)
.+..+|.++|+-.+|||||..+++-....... ....+.+......+.... .+.++++|||||-
T Consensus 8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV 87 (697)
T COG0480 8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV 87 (697)
T ss_pred ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence 45689999999999999999998643221110 001223343443333334 4899999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN 133 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~ 133 (185)
+|.......++-+|++++|+|+...-....-.-|.+ .. .. ++|.++++||+|....+
T Consensus 88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-a~----~~---~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-AD----KY---GVPRILFVNKMDRLGAD 144 (697)
T ss_pred ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-Hh----hc---CCCeEEEEECccccccC
Confidence 999999999999999999999987433332222222 22 22 78999999999987653
No 316
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.35 E-value=6.5e-12 Score=89.84 Aligned_cols=57 Identities=18% Similarity=0.081 Sum_probs=40.8
Q ss_pred CCcEEEEEeCCCCCCCCceeecHHHHHHHH-HhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 117 NFPFVVLGNKTDVDGGNSRVVSEKKAKAWC-ASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 117 ~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
..+-++|+||+|+.... ....+...... ...+..+++++|+++|+|++++++||.+.
T Consensus 230 ~~ADIVVLNKiDLl~~~--~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYL--NFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCccc--HHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 34679999999997531 11233333333 33456899999999999999999999874
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.34 E-value=1.3e-12 Score=91.01 Aligned_cols=152 Identities=18% Similarity=0.201 Sum_probs=87.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC----------CCccCcc----------------eeeeEEEEEEEC-------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS----------NQYKATI----------------GADFLTKEVQFE------- 53 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~----------~~~~~~~----------------~~~~~~~~~~~~------- 53 (185)
+-+.|.+.|+||+|||||++.|...-.. +.+.|.+ ........+.-.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 4578999999999999999998532110 0011111 112222222211
Q ss_pred -----------CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 029929 54 -----------DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122 (185)
Q Consensus 54 -----------~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 122 (185)
..++.+.+++|.|...... ....-+|.+++|.-+.-.+....++.-.-++ .=++
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE~---~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------------aDi~ 172 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSEV---DIADMADTVVLVLVPGLGDEIQAIKAGIMEI------------ADIF 172 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHHH---HHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------------SEE
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccHH---HHHHhcCeEEEEecCCCccHHHHHhhhhhhh------------ccEE
Confidence 1246778889988332222 2345699999999887665555443322322 3499
Q ss_pred EEeCCCCCCCCceeecHHHHHHHHHhc------CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 123 LGNKTDVDGGNSRVVSEKKAKAWCASK------GNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
|+||+|.... .....+++...... +..|++.+||.++.|++++++.|.+..
T Consensus 173 vVNKaD~~gA---~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 173 VVNKADRPGA---DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp EEE--SHHHH---HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred EEeCCChHHH---HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999995542 23333444443321 135899999999999999999998743
No 318
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.34 E-value=2.7e-11 Score=85.02 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=41.9
Q ss_pred EEEEEecCCChhh-------------hcccccchhc-cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEE
Q 029929 57 FTLQIWDTAGQER-------------FQSLGVAFYR-GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVV 122 (185)
Q Consensus 57 ~~~~~~D~~g~~~-------------~~~~~~~~~~-~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ii 122 (185)
..++++||||-.. ...+...+++ ..+++++|+|+...-.......+...+. . .+.|+++
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~---~~~rti~ 197 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----P---QGERTIG 197 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----H---cCCcEEE
Confidence 5688999999431 1223455666 4568889998865211111112222221 1 2669999
Q ss_pred EEeCCCCCCC
Q 029929 123 LGNKTDVDGG 132 (185)
Q Consensus 123 v~nK~Dl~~~ 132 (185)
|+||.|....
T Consensus 198 ViTK~D~~~~ 207 (240)
T smart00053 198 VITKLDLMDE 207 (240)
T ss_pred EEECCCCCCc
Confidence 9999999864
No 319
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.34 E-value=6.3e-11 Score=86.58 Aligned_cols=145 Identities=17% Similarity=0.295 Sum_probs=88.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCC---------ccCcceeeeEEEEEEECCcEEEEEEecCCCh--------
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ---------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------- 67 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------- 67 (185)
+...|.++++|+.|.|||||+|+|+...+... ...+.........+.-++....++++||||-
T Consensus 18 kG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 18 KGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred cCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 45569999999999999999999987754321 1223333444444444566778899999991
Q ss_pred ----------hhhccc-------ccchh--ccCcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929 68 ----------ERFQSL-------GVAFY--RGADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (185)
Q Consensus 68 ----------~~~~~~-------~~~~~--~~~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 126 (185)
+.+... ....+ ..+|+++|.+..+.. ..++ ..++..+. ..+.+|-|+.|
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~D--i~~Mk~l~--------~~vNiIPVI~K 167 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLD--IEFMKKLS--------KKVNLIPVIAK 167 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhh--HHHHHHHh--------ccccccceeec
Confidence 111110 01111 268999999987652 1111 22223222 15679999999
Q ss_pred CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|.....+.....+.+.+-+...+ ++++.....
T Consensus 168 aD~lT~~El~~~K~~I~~~i~~~n-I~vf~fp~~ 200 (366)
T KOG2655|consen 168 ADTLTKDELNQFKKRIRQDIEEHN-IKVFDFPTD 200 (366)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcC-cceecCCCC
Confidence 998876555555555666555554 666554443
No 320
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=5.8e-11 Score=81.50 Aligned_cols=148 Identities=16% Similarity=0.218 Sum_probs=91.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC---------CccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER------- 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~------- 69 (185)
.-.|+|+|+|..|.|||||+|.++...... ....|+........+.-.+...+++++||||-.+
T Consensus 44 GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~nc 123 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNC 123 (336)
T ss_pred cCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccch
Confidence 346999999999999999999998654322 1112333333344445566778899999999111
Q ss_pred -------------------hcccccchh--ccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 70 -------------------FQSLGVAFY--RGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 70 -------------------~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
....+...+ ..+|+++|.+..+.. ++.-+ ..+++.+.+ -+.++-|+.|+
T Consensus 124 WePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGh-sLrplDieflkrLt~--------vvNvvPVIaka 194 (336)
T KOG1547|consen 124 WEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGH-SLRPLDIEFLKRLTE--------VVNVVPVIAKA 194 (336)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCC-ccCcccHHHHHHHhh--------hheeeeeEeec
Confidence 111111122 357899998887642 11111 223333322 23588899999
Q ss_pred CCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
|-.--+++....+.+++-....+ +.+++--+.+-+
T Consensus 195 DtlTleEr~~FkqrI~~el~~~~-i~vYPq~~fded 229 (336)
T KOG1547|consen 195 DTLTLEERSAFKQRIRKELEKHG-IDVYPQDSFDED 229 (336)
T ss_pred ccccHHHHHHHHHHHHHHHHhcC-cccccccccccc
Confidence 98766567777777777766665 677766555443
No 321
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.34 E-value=2.2e-11 Score=77.44 Aligned_cols=114 Identities=30% Similarity=0.378 Sum_probs=76.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCcc-CcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYK-ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
++|+++|..|+|||+|+.++....+...+. ++.+ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence 489999999999999999997776654333 3322 222334456778999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
++..+.++++.+ |...+.... ..+.|.++++||.|+... .....+... +++++|++++.|+.
T Consensus 54 ~~~~~~~s~~~~--~~~~i~~~~----k~dl~~~~~~nk~dl~~~--~~~~~~~~~---------~~~~~s~~~~~~~~ 115 (124)
T smart00010 54 WRVDDRDSADNK--NVPEVLVGN----KSDLPILVGGNRDVLEEE--RQVATEEGL---------EFAETSAKTPEEGE 115 (124)
T ss_pred EEccCHHHHHHH--hHHHHHhcC----CCCCcEEEEeechhhHhh--CcCCHHHHH---------HHHHHhCCCcchhh
Confidence 999999888755 555443321 125688999999998543 122222222 34456778888874
No 322
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.8e-11 Score=85.77 Aligned_cols=84 Identities=23% Similarity=0.170 Sum_probs=61.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC----------------cEEEEEEecCCC----h
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED----------------RLFTLQIWDTAG----Q 67 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~D~~g----~ 67 (185)
.+++.++|.||+|||||.|+++.........|+.+.++......+.. ....+.|+|.+| .
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47999999999999999999999886666778877776665544321 124578899988 2
Q ss_pred hhhccc---ccchhccCcEEEEEEECC
Q 029929 68 ERFQSL---GVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 68 ~~~~~~---~~~~~~~~d~~i~v~d~~ 91 (185)
..-..+ .-.-++.+|+++.|+++.
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 222333 333457899999999976
No 323
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.30 E-value=5.9e-11 Score=92.65 Aligned_cols=121 Identities=18% Similarity=0.138 Sum_probs=70.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCC-c-cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----------ccc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQ-Y-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~ 74 (185)
..++|+|+|.+|+||||++|++++...... . .+.++ .......... +..+.++||||..... ...
T Consensus 117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TT-r~~ei~~~id--G~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTT-SVQEIEGLVQ--GVKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCce-EEEEEEEEEC--CceEEEEECCCCCccccchHHHHHHHHHH
Confidence 347899999999999999999998764322 2 12222 2211122223 3578899999943321 112
Q ss_pred cchhc--cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 75 VAFYR--GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 75 ~~~~~--~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
..++. .+|++|+|..++.......-..++..+...+-..- -..+|||+|+.|....
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~I--wk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSI--WFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHh--HcCEEEEEeCCccCCC
Confidence 22333 48999999887642221111234444444433211 1258999999998753
No 324
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.29 E-value=2.5e-11 Score=85.95 Aligned_cols=157 Identities=17% Similarity=0.170 Sum_probs=92.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-----------CCccCcce---------------eeeEEEEEE--------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-----------NQYKATIG---------------ADFLTKEVQ-------- 51 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-----------~~~~~~~~---------------~~~~~~~~~-------- 51 (185)
.+...|.+.|.||+|||||+..|...-.. +++..+.+ .......+.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 34578999999999999999998542110 11111110 111111111
Q ss_pred ----------ECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 029929 52 ----------FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFV 121 (185)
Q Consensus 52 ----------~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 121 (185)
++.-++.+.+++|.|...... ....-+|.+++|.-..-.+....++. -+.+. -=+
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~---GimEi---------aDi 193 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKA---GIMEI---------ADI 193 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHh---hhhhh---------hhe
Confidence 122356788899988443322 23456999999887765555544433 23222 348
Q ss_pred EEEeCCCCCCCCceeecHHHHHHHH-----HhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 122 VLGNKTDVDGGNSRVVSEKKAKAWC-----ASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 122 iv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
+|+||.|......-.........+. ...+..|++.+||.+|+|+.++++.|.+...
T Consensus 194 ~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 194 IVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred eeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 9999999654321111111122222 1223568999999999999999999988654
No 325
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.28 E-value=2e-11 Score=87.25 Aligned_cols=81 Identities=20% Similarity=0.151 Sum_probs=58.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh------
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER------ 69 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~------ 69 (185)
|+++|.||+|||||+|++++........|+++.+.....+.+.+. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 578999999999999999998876666677776666666655543 13588999999321
Q ss_pred -hcccccchhccCcEEEEEEECC
Q 029929 70 -FQSLGVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 70 -~~~~~~~~~~~~d~~i~v~d~~ 91 (185)
........++.+|++++|+|+.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233457899999999874
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=5.2e-11 Score=92.17 Aligned_cols=118 Identities=24% Similarity=0.277 Sum_probs=82.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC-----------------cceeeeEEEEE---EECCcEEEEEEec
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA-----------------TIGADFLTKEV---QFEDRLFTLQIWD 63 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~-----------------~~~~~~~~~~~---~~~~~~~~~~~~D 63 (185)
......+|.++|+-++|||+|+..|..+..+..... +.+........ ...+..+.++++|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 345678999999999999999999876554322111 11111111111 1245678899999
Q ss_pred CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
||||-.|.......++.+|++++++|+...-++.. ++.++... . .+.|+++|+||.|.
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlnt-Er~ikhai----q---~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNT-ERIIKHAI----Q---NRLPIVVVINKVDR 261 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeH-HHHHHHHH----h---ccCcEEEEEehhHH
Confidence 99999999999999999999999999987655544 22222221 1 16799999999995
No 327
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.22 E-value=1.3e-10 Score=84.86 Aligned_cols=164 Identities=19% Similarity=0.143 Sum_probs=100.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC--------------cceeeeEEEEEEECCc-----------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--------------TIGADFLTKEVQFEDR----------------- 55 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~----------------- 55 (185)
..+.|.+.|..+.|||||.-.|......+.... ..+.+.....+-+++.
T Consensus 116 ~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~v 195 (527)
T COG5258 116 EHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAV 195 (527)
T ss_pred ceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHh
Confidence 358899999999999999988765543322111 1223333333333221
Q ss_pred ----EEEEEEecCCChhhhcccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 56 ----LFTLQIWDTAGQERFQSLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 56 ----~~~~~~~D~~g~~~~~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
...+.|+||.|++.+....... -.+.|..++++.+++.-+--. ...+.-. .....|+++++||+|+
T Consensus 196 v~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t-kEHLgi~-------~a~~lPviVvvTK~D~ 267 (527)
T COG5258 196 VKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT-KEHLGIA-------LAMELPVIVVVTKIDM 267 (527)
T ss_pred hhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh-hHhhhhh-------hhhcCCEEEEEEeccc
Confidence 2356789999998776543333 367999999999987433221 1111111 1116799999999999
Q ss_pred CCCCceeecHHHHHHHHHh------------------------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 130 DGGNSRVVSEKKAKAWCAS------------------------KGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
.+++..+...+++...... .+-.|++.+|+.+|+|++-+.+. ...++.+
T Consensus 268 ~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~-f~~Lp~r 340 (527)
T COG5258 268 VPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEF-FLLLPKR 340 (527)
T ss_pred CcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHH-HHhCCcc
Confidence 8875444444444433322 11358999999999999655544 4444444
No 328
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=6.9e-12 Score=88.86 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=85.6
Q ss_pred EEEEEecCCChhhhcccccchhccCcEEEEEEECCC----hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
..+.|+|+||++-....+.....-.|++++++..+. |.+.+.+ ..+.-+ . =..++++-||+|+..+
T Consensus 125 RHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL----aaveiM-~-----LkhiiilQNKiDli~e 194 (466)
T KOG0466|consen 125 RHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL----AAVEIM-K-----LKHIIILQNKIDLIKE 194 (466)
T ss_pred EEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH----HHHHHh-h-----hceEEEEechhhhhhH
Confidence 356789999999887777666677899999998876 3333333 222111 1 1258889999999987
Q ss_pred CceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 133 NSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+......+++..|.+.. ..+|++++||.-+++++-+.++|+..++-.
T Consensus 195 ~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 195 SQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred HHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 76777778888888754 357999999999999999999999998754
No 329
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=4.3e-10 Score=82.04 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=96.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----------------cCc-------ceeeeEEEEEEEC---------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----------------KAT-------IGADFLTKEVQFE--------- 53 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~----------------~~~-------~~~~~~~~~~~~~--------- 53 (185)
-..++++|+|...+|||||+-.|+........ ..+ .+.+-.-..+.|.
T Consensus 165 fievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~ 244 (591)
T KOG1143|consen 165 FIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIV 244 (591)
T ss_pred ceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHH
Confidence 35689999999999999999887654432110 001 1111111111111
Q ss_pred -CcEEEEEEecCCChhhhcccccchhcc--CcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 54 -DRLFTLQIWDTAGQERFQSLGVAFYRG--ADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 54 -~~~~~~~~~D~~g~~~~~~~~~~~~~~--~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
...-.++|+|.+|+..+.....+.+.. .|.+++|++++....... --.+...+ ++|++++++|+|
T Consensus 245 e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL----------~iPfFvlvtK~D 314 (591)
T KOG1143|consen 245 EKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAAL----------NIPFFVLVTKMD 314 (591)
T ss_pred hhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHh----------CCCeEEEEEeec
Confidence 123467999999999888777666653 688999998876433222 11222222 889999999999
Q ss_pred CCCCCceeecHHH----------------------HHHHHH---hcCCCcEEEeeeccCCCHHHHHHHH
Q 029929 129 VDGGNSRVVSEKK----------------------AKAWCA---SKGNIPYFETSAKEGFNVEAAFECI 172 (185)
Q Consensus 129 l~~~~~~~~~~~~----------------------~~~~~~---~~~~~~~~~~s~~~~~~i~~~~~~i 172 (185)
+......+...++ ....++ ..+..|++.+|+..|+|++-+...|
T Consensus 315 l~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL 383 (591)
T KOG1143|consen 315 LVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL 383 (591)
T ss_pred cccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence 9875322222222 222222 2234689999999999987665444
No 330
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=4.5e-10 Score=80.84 Aligned_cols=166 Identities=18% Similarity=0.157 Sum_probs=104.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC----------CCC----CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR----------KFS----NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~----------~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
....||.-+|+..-|||||--+++.- ++. .......+.++....+.|+-......-.|+||+.++-
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 45689999999999999999887531 111 0111223344444444444444444456999999999
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCC-CceeecHHHHHHHHHhc
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGG-NSRVVSEKKAKAWCASK 149 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~-~~~~~~~~~~~~~~~~~ 149 (185)
..+.....+.|++|+|+.+++......-+.++. .++. ++ .+++.+||.|++++ +-.+.-..+++++...+
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLL--ArQV------GV~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~ 203 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLL--ARQV------GVKHIVVFINKVDLVDDPEMLELVEMEIRELLSEF 203 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHH--HHHc------CCceEEEEEecccccCCHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999998444332222111 1111 33 47788899999954 33344455677777665
Q ss_pred C----CCcEEEeeec---cCCC-------HHHHHHHHHHHHhhc
Q 029929 150 G----NIPYFETSAK---EGFN-------VEAAFECIAKNALKN 179 (185)
Q Consensus 150 ~----~~~~~~~s~~---~~~~-------i~~~~~~i~~~~~~~ 179 (185)
+ ++|++.-||. .|.+ +.++++.+-.+++..
T Consensus 204 gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 204 GFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred CCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 4 5789887665 4432 455555555555433
No 331
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=9.4e-10 Score=75.76 Aligned_cols=171 Identities=16% Similarity=0.250 Sum_probs=103.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc---ccchhccCcEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL---GVAFYRGADCC 84 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~---~~~~~~~~d~~ 84 (185)
..+|+++|...|||||+...++.+. .++.....+.+-....-.+.+.-+.+.+||.|||-.+..- ....++++-++
T Consensus 27 kp~ilLMG~rRsGKsSI~KVVFhkM-sPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL 105 (347)
T KOG3887|consen 27 KPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL 105 (347)
T ss_pred CceEEEEeecccCcchhhheeeecc-CCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence 3679999999999999877666554 3322222222221222223334468899999997654332 34567899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cC----CCcEEE
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KG----NIPYFE 156 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~----~~~~~~ 156 (185)
|+|+|+.+ +..+.+.++...+.+. ..-++++.+=+.+.|.|-..++-+...+.++.+.... .+ ...++-
T Consensus 106 ifvIDaQd-dy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~L 182 (347)
T KOG3887|consen 106 IFVIDAQD-DYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYL 182 (347)
T ss_pred EEEEechH-HHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEE
Confidence 99999975 2333333333333222 2334577888999999987654444444444433321 11 133444
Q ss_pred eeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 157 TSAKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
+|.. ...+-|.|..+++++.++-+..
T Consensus 183 TSIy-DHSIfEAFSkvVQkLipqLptL 208 (347)
T KOG3887|consen 183 TSIY-DHSIFEAFSKVVQKLIPQLPTL 208 (347)
T ss_pred eeec-chHHHHHHHHHHHHHhhhchhH
Confidence 5544 4569999999999988876544
No 332
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.11 E-value=7.5e-10 Score=73.37 Aligned_cols=95 Identities=21% Similarity=0.136 Sum_probs=63.4
Q ss_pred cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (185)
+.+..+..+.+|++++|+|+.++..... ..+...+ .. .+.|+++|+||+|+.... . .+....+....+
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~----~~---~~~p~iiv~NK~Dl~~~~--~--~~~~~~~~~~~~ 70 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYV----LE---LGKKLLIVLNKADLVPKE--V--LEKWKSIKESEG 70 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHH----Hh---CCCcEEEEEEhHHhCCHH--H--HHHHHHHHHhCC
Confidence 3455667788999999999987643322 1111111 11 156999999999986421 1 111212223333
Q ss_pred CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.+++++||+++.|++++++.|.+.++.
T Consensus 71 -~~~~~iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 71 -IPVVYVSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred -CcEEEEEccccccHHHHHHHHHHHHhh
Confidence 689999999999999999999988764
No 333
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.09 E-value=5.3e-10 Score=78.41 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=94.4
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSL 73 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~ 73 (185)
+..+.++++.|..|+|||+|++.++..+..... .+..+.+.....+.+.. ...++|.|| ..++...
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~~---~~~~vDlPG~~~a~y~~~~~~d~~~~ 209 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVGK---SWYEVDLPGYGRAGYGFELPADWDKF 209 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeeccc---eEEEEecCCcccccCCccCcchHhHh
Confidence 356689999999999999999999876654322 22555555555555443 556779999 2233334
Q ss_pred ccchhcc---CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----e-----ee-c
Q 029929 74 GVAFYRG---ADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----R-----VV-S 138 (185)
Q Consensus 74 ~~~~~~~---~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~-----~~-~ 138 (185)
...|+.. --.+++++|++.+- .-.....|..+. ++|..+|+||||...... + .. .
T Consensus 210 t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~----------~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 210 TKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN----------NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc----------CCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 4444422 23456677776532 112224454443 889999999999754311 1 11 1
Q ss_pred HHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 139 EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+..++.... . ..|.+.+|+.++.|+++++-.|.+.
T Consensus 280 ~~l~~~~f~-~-~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 280 QGLIRGVFL-V-DLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred hhcccccee-c-cCCceeeecccccCceeeeeehhhh
Confidence 111111111 1 2466789999999999888766654
No 334
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.09 E-value=7.3e-10 Score=75.82 Aligned_cols=98 Identities=23% Similarity=0.244 Sum_probs=65.6
Q ss_pred hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC 146 (185)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (185)
...+...+..+++.+|++++|+|+.++... |...+.... .+.|+++|+||+|+.... ...+....+.
T Consensus 21 ~~~~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~-----~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~ 87 (190)
T cd01855 21 EDFILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFG-----GNNPVILVGNKIDLLPKD---KNLVRIKNWL 87 (190)
T ss_pred HHHHHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhc-----CCCcEEEEEEchhcCCCC---CCHHHHHHHH
Confidence 333577788889999999999999875421 112221111 256999999999997532 1222222222
Q ss_pred -----HhcC--CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 147 -----ASKG--NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 147 -----~~~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
...+ ..+++++||+++.|+++++++|.+.++
T Consensus 88 ~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 88 RAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 1121 236899999999999999999998775
No 335
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.07 E-value=8.7e-10 Score=80.59 Aligned_cols=159 Identities=19% Similarity=0.199 Sum_probs=92.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC------------------CCCccCcceeee-----EEEEE------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF------------------SNQYKATIGADF-----LTKEV------------ 50 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~------------------~~~~~~~~~~~~-----~~~~~------------ 50 (185)
-...+|.|+|...+|||||+-.|+.... .....+..+.++ .-..+
T Consensus 131 F~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdW 210 (641)
T KOG0463|consen 131 FIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDW 210 (641)
T ss_pred ceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccc
Confidence 4568999999999999999966643221 111111111111 00000
Q ss_pred -E-ECCcEEEEEEecCCChhhhcccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeC
Q 029929 51 -Q-FEDRLFTLQIWDTAGQERFQSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNK 126 (185)
Q Consensus 51 -~-~~~~~~~~~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK 126 (185)
. .++..-.++|+|+.|++.+........ +-.|..++++-++..-- ....+++.......+|+++|++|
T Consensus 211 vkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIi--------GmTKEHLgLALaL~VPVfvVVTK 282 (641)
T KOG0463|consen 211 VKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGII--------GMTKEHLGLALALHVPVFVVVTK 282 (641)
T ss_pred eeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccce--------eccHHhhhhhhhhcCcEEEEEEe
Confidence 0 122234578999999998876544333 45788888887764211 11111112222237899999999
Q ss_pred CCCCCCCceeecHHHHHHHHHhcC-------------------------CCcEEEeeeccCCCHHHHHHHH
Q 029929 127 TDVDGGNSRVVSEKKAKAWCASKG-------------------------NIPYFETSAKEGFNVEAAFECI 172 (185)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~s~~~~~~i~~~~~~i 172 (185)
+|+...+..++.-..+..+..+.+ -+|+|.+|..+|.++.-+.-.|
T Consensus 283 IDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFL 353 (641)
T KOG0463|consen 283 IDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKMFL 353 (641)
T ss_pred eccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHHHH
Confidence 999876433333333333333211 3689999999999987554443
No 336
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=99.01 E-value=6.6e-10 Score=84.12 Aligned_cols=122 Identities=15% Similarity=0.144 Sum_probs=77.8
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh-------HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS-------FDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
....+.++|.+|+...+.-|..++..++++|||+++++-+. ...+..-+..+...+...-..+.|+++++||.
T Consensus 234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~ 313 (389)
T PF00503_consen 234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI 313 (389)
T ss_dssp TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence 44678899999999999999999999999999999875221 12233333444444444333478999999999
Q ss_pred CCCC-----CC----------ce-eecHHHHHHHHHh-----c------CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 128 DVDG-----GN----------SR-VVSEKKAKAWCAS-----K------GNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 128 Dl~~-----~~----------~~-~~~~~~~~~~~~~-----~------~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
|+.. .. .. ....+....+... . ..+.+..++|.+...++.+++.+.+.+
T Consensus 314 D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 314 DLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 9622 11 01 1233344433322 1 112355788888888888888877653
No 337
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.01 E-value=3.1e-09 Score=77.16 Aligned_cols=89 Identities=18% Similarity=0.121 Sum_probs=65.4
Q ss_pred ccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
.+..+.++|.+++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+... . ............+ .
T Consensus 72 ~~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~-------~~ip~iIVlNK~DL~~~--~--~~~~~~~~~~~~g-~ 139 (287)
T cd01854 72 EQVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA-------AGIEPVIVLTKADLLDD--E--EEELELVEALALG-Y 139 (287)
T ss_pred ceeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH-------cCCCEEEEEEHHHCCCh--H--HHHHHHHHHHhCC-C
Confidence 344578999999999999987 77777777765542 16799999999999753 1 1112222233344 7
Q ss_pred cEEEeeeccCCCHHHHHHHHHH
Q 029929 153 PYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
+++++||+++.|+++++.+|..
T Consensus 140 ~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 140 PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred eEEEEECCCCccHHHHHhhhcc
Confidence 9999999999999999887753
No 338
>PRK12289 GTPase RsgA; Reviewed
Probab=99.00 E-value=4.6e-09 Score=77.95 Aligned_cols=89 Identities=17% Similarity=0.112 Sum_probs=62.7
Q ss_pred ccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 74 GVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
....+.++|.+++|+|+.++. ....+..|+..... .++|+++|+||+||.... + .+.........+ +
T Consensus 83 ~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~-------~~ip~ILVlNK~DLv~~~--~--~~~~~~~~~~~g-~ 150 (352)
T PRK12289 83 DRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES-------TGLEIVLCLNKADLVSPT--E--QQQWQDRLQQWG-Y 150 (352)
T ss_pred echhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEchhcCChH--H--HHHHHHHHHhcC-C
Confidence 344578999999999998865 33345555554421 267999999999997431 1 122223333444 7
Q ss_pred cEEEeeeccCCCHHHHHHHHHH
Q 029929 153 PYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
+++++||.++.|++++++.|..
T Consensus 151 ~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 151 QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred eEEEEEcCCCCCHHHHhhhhcc
Confidence 8999999999999999998864
No 339
>PRK00098 GTPase RsgA; Reviewed
Probab=98.96 E-value=4.7e-09 Score=76.65 Aligned_cols=86 Identities=20% Similarity=0.161 Sum_probs=61.6
Q ss_pred hhccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
...++|++++|+|+.+++..... ..|+..+.. .++|+++|+||+|+... .+ ..+.........+ .+++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~-------~~ip~iIVlNK~DL~~~--~~-~~~~~~~~~~~~g-~~v~ 145 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA-------NGIKPIIVLNKIDLLDD--LE-EARELLALYRAIG-YDVL 145 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH-------CCCCEEEEEEhHHcCCC--HH-HHHHHHHHHHHCC-CeEE
Confidence 45889999999999887665443 556554432 16799999999999632 11 2223334444445 7899
Q ss_pred EeeeccCCCHHHHHHHHH
Q 029929 156 ETSAKEGFNVEAAFECIA 173 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~ 173 (185)
++||+++.|++++++.+.
T Consensus 146 ~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 146 ELSAKEGEGLDELKPLLA 163 (298)
T ss_pred EEeCCCCccHHHHHhhcc
Confidence 999999999999998764
No 340
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.95 E-value=3.5e-09 Score=80.63 Aligned_cols=163 Identities=26% Similarity=0.442 Sum_probs=122.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..+|+.++|..++|||.|+.+++...+.+...+..+ ...+++..++....+.+.|-+|... ..|...+|++|+
T Consensus 29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~--~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIf 101 (749)
T KOG0705|consen 29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGG--RFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVF 101 (749)
T ss_pred chhheeeeecccCCceeeeeeeccceeccccCCcCc--cceeeEEeeccceEeeeecccCCch-----hhhhhhccceEE
Confidence 358999999999999999999887776654333322 2245555677777888888888433 345677999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+..-+..+++....+...+..+.. ...+|.++++++.-......+........++......+.+++.++..|-++.
T Consensus 102 vf~~~d~~s~q~v~~l~~~l~~~r~---r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~ 178 (749)
T KOG0705|consen 102 VFSVEDEQSFQAVQALAHEMSSYRN---ISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE 178 (749)
T ss_pred EEEeccccCHHHHHHHHhhcccccc---cccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence 9999999999887766666544333 3467888888887666555566667777777777766899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
.+|..+...+...
T Consensus 179 rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 179 RVFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877654
No 341
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=4.7e-09 Score=82.59 Aligned_cols=115 Identities=17% Similarity=0.171 Sum_probs=82.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC--------------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--------------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
...-+++++-+...|||||+.+|...... .....+.+.+.....+.+....+.++++|+|||-+|.
T Consensus 7 ~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 7 EGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred CceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45678999999999999999999754321 1122234455555556665677899999999999999
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
+......+-+|++++++|+...-..... ..+++.+ .. +...++|+||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~----~~---~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAW----IE---GLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHH----Hc---cCceEEEEehhh
Confidence 9999999999999999999863332221 1111111 11 557899999999
No 342
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.95 E-value=8.2e-09 Score=75.34 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=73.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEEC------C------------------------
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFE------D------------------------ 54 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~------~------------------------ 54 (185)
..-|+++|.-..||||+|+.|+..+++. ...|++ +.-...+.-+ +
T Consensus 58 KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTt--d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 58 KPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTT--DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CceEEEEeccccchhHHHHHHHhCCCCccccCCCCCc--ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 3568999999999999999999988863 223332 2212221110 0
Q ss_pred ---------cEEEEEEecCCChh-----------hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929 55 ---------RLFTLQIWDTAGQE-----------RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114 (185)
Q Consensus 55 ---------~~~~~~~~D~~g~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (185)
.--.++++||||.- .|.....=+...+|.++++||+..-+-.++....+..+.. .
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~- 210 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----H- 210 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----C-
Confidence 01257899999921 1222333456789999999998765444544555555432 2
Q ss_pred CCCCcEEEEEeCCCCCCC
Q 029929 115 PENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 115 ~~~~p~iiv~nK~Dl~~~ 132 (185)
.-.+-||+||+|.+..
T Consensus 211 --EdkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 211 --EDKIRVVLNKADQVDT 226 (532)
T ss_pred --cceeEEEeccccccCH
Confidence 2367899999998764
No 343
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.95 E-value=4.5e-09 Score=77.85 Aligned_cols=83 Identities=22% Similarity=0.055 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh---
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER--- 69 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~--- 69 (185)
+++.++|.|++|||||++++++... .....|.++.++....+.+.+. ...+.+.|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999887 5555577766666666665542 23678889999432
Q ss_pred ----hcccccchhccCcEEEEEEECC
Q 029929 70 ----FQSLGVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 70 ----~~~~~~~~~~~~d~~i~v~d~~ 91 (185)
........++.+|++++|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 2223344568899999999985
No 344
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.94 E-value=2.8e-09 Score=69.43 Aligned_cols=54 Identities=28% Similarity=0.375 Sum_probs=37.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
+++++|.+|+|||||+|++.+...... ....+.+.....+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 899999999999999999998775422 12222333344444443 5689999993
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.93 E-value=4.4e-09 Score=70.58 Aligned_cols=54 Identities=22% Similarity=0.365 Sum_probs=38.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
.++++++|.+|+|||||+|++.+.... ....|+++.. ...+.++ ..+.++||||
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~--~~~~~~~---~~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKS--MQEVHLD---KKVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcc--eEEEEeC---CCEEEEECcC
Confidence 489999999999999999999987653 3334444333 3333333 2577899999
No 346
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.91 E-value=5.9e-09 Score=69.14 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=36.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
..++|+++|.+|+|||||+|++.+.... ....+..+ .....+.... .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T--~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGET--KVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCee--EeEEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999986643 22233332 2233333322 356889999
No 347
>PRK12288 GTPase RsgA; Reviewed
Probab=98.91 E-value=1.5e-08 Score=75.20 Aligned_cols=88 Identities=15% Similarity=0.092 Sum_probs=64.5
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..++|.+++|++.....++..+.+|+..... .++|.++|+||+|+........ ...........+ ++++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~-------~~i~~VIVlNK~DL~~~~~~~~-~~~~~~~y~~~g-~~v~~v 188 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET-------LGIEPLIVLNKIDLLDDEGRAF-VNEQLDIYRNIG-YRVLMV 188 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh-------cCCCEEEEEECccCCCcHHHHH-HHHHHHHHHhCC-CeEEEE
Confidence 4679999999999888888888888764431 2679999999999975421111 122222333445 799999
Q ss_pred eeccCCCHHHHHHHHHH
Q 029929 158 SAKEGFNVEAAFECIAK 174 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~ 174 (185)
||+++.|+++++++|..
T Consensus 189 SA~tg~GideL~~~L~~ 205 (347)
T PRK12288 189 SSHTGEGLEELEAALTG 205 (347)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998865
No 348
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.90 E-value=7.6e-09 Score=74.62 Aligned_cols=87 Identities=23% Similarity=0.174 Sum_probs=65.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC---------------cEEEEEEecCCChh-
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED---------------RLFTLQIWDTAGQE- 68 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~D~~g~~- 68 (185)
..+.+++.++|.|++|||||+|++++....+...|+.+.++....+.+.. ....++++|.+|.-
T Consensus 17 ~~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 17 DGNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 35678999999999999999999999988888888888887776665432 23567899998822
Q ss_pred ---hhccc---ccchhccCcEEEEEEECC
Q 029929 69 ---RFQSL---GVAFYRGADCCVLVYDVN 91 (185)
Q Consensus 69 ---~~~~~---~~~~~~~~d~~i~v~d~~ 91 (185)
.-..+ ...-++.+|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhhccceeEEEEec
Confidence 22222 333457899999998875
No 349
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=2.6e-08 Score=76.60 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=84.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
..+|-++|+||+|+||||||++|..+...... ......+ -..+....++|+++|. +.. .+....+-+|++
T Consensus 67 PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiT------vvsgK~RRiTflEcp~--Dl~-~miDvaKIaDLV 137 (1077)
T COG5192 67 PPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPIT------VVSGKTRRITFLECPS--DLH-QMIDVAKIADLV 137 (1077)
T ss_pred CCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceE------EeecceeEEEEEeChH--HHH-HHHhHHHhhhee
Confidence 35688889999999999999998765322110 1111111 1345678999999994 222 233455679999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce-eecHHH--HHHHHHhcCCCcEEEeeecc
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR-VVSEKK--AKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~s~~~ 161 (185)
++++|.+-.-..+.+ .++.-+. .++.+ .++-|+|..|+.....- ...... -+.+..-+..+++|.+|...
T Consensus 138 lLlIdgnfGfEMETm-EFLnil~----~HGmP--rvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~ 210 (1077)
T COG5192 138 LLLIDGNFGFEMETM-EFLNILI----SHGMP--RVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE 210 (1077)
T ss_pred EEEeccccCceehHH-HHHHHHh----hcCCC--ceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence 999999864333333 2333333 33222 37788999999764211 111111 12334445568899998775
Q ss_pred C
Q 029929 162 G 162 (185)
Q Consensus 162 ~ 162 (185)
+
T Consensus 211 n 211 (1077)
T COG5192 211 N 211 (1077)
T ss_pred c
Confidence 3
No 350
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.89 E-value=5e-08 Score=68.11 Aligned_cols=87 Identities=17% Similarity=0.152 Sum_probs=61.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~~ 81 (185)
-+|.++|-|.+||||++..+.+...+.....+++.........+.+ .++++.|.||.-+ .........+.|
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavartc 137 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVARTC 137 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeecc
Confidence 4899999999999999999998776654445555555555555554 5677889999322 123344556789
Q ss_pred cEEEEEEECCChhhHH
Q 029929 82 DCCVLVYDVNVMKSFD 97 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~ 97 (185)
+++++|.|+..|-+-.
T Consensus 138 nli~~vld~~kp~~hk 153 (358)
T KOG1487|consen 138 NLIFIVLDVLKPLSHK 153 (358)
T ss_pred cEEEEEeeccCcccHH
Confidence 9999999988665443
No 351
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.86 E-value=1.4e-08 Score=76.07 Aligned_cols=96 Identities=22% Similarity=0.234 Sum_probs=66.9
Q ss_pred hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHH---
Q 029929 67 QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAK--- 143 (185)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~--- 143 (185)
.+++..+...+...++++++|+|+.+.+ ..|...+.+... +.|+++|+||+|+.+.. ...+.+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~~-----~~piilV~NK~DLl~k~---~~~~~~~~~l 116 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFVG-----GNPVLLVGNKIDLLPKS---VNLSKIKEWM 116 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHhC-----CCCEEEEEEchhhCCCC---CCHHHHHHHH
Confidence 5677777888888999999999997643 223344443332 45999999999997532 2222332
Q ss_pred -HHHHhcCC--CcEEEeeeccCCCHHHHHHHHHHH
Q 029929 144 -AWCASKGN--IPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 144 -~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+++...+. ..++.+||+++.|++++++.|.+.
T Consensus 117 ~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 117 KKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 33444441 258999999999999999999764
No 352
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.84 E-value=2.4e-08 Score=67.16 Aligned_cols=93 Identities=22% Similarity=0.113 Sum_probs=61.8
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (185)
........++.+|++++|+|+.++...... .+... .. +.|+++|+||+|+.+. .. ......+....
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~~----~~-----~k~~ilVlNK~Dl~~~--~~--~~~~~~~~~~~ 74 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEKI----LG-----NKPRIIVLNKADLADP--KK--TKKWLKYFESK 74 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCCh-hhHhH----hc-----CCCEEEEEehhhcCCh--HH--HHHHHHHHHhc
Confidence 344556778899999999999876543221 11111 11 4689999999999643 11 11121222222
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
. ..++.+|++++.|++++.+.+...++
T Consensus 75 ~-~~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 G-EKVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred C-CeEEEEECCCcccHHHHHHHHHHHHH
Confidence 2 56899999999999999999998764
No 353
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.82 E-value=3.2e-08 Score=65.65 Aligned_cols=91 Identities=13% Similarity=0.072 Sum_probs=56.8
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
..+..+|++++|+|+.++..... ..+...+.. . ..+.|+++|+||+|+.... ........+..... ..++
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~----~-~~~~p~ilVlNKiDl~~~~---~~~~~~~~~~~~~~-~~~~ 73 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKK----E-KPHKHLIFVLNKCDLVPTW---VTARWVKILSKEYP-TIAF 73 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccC-HHHHHHHHh----c-cCCCCEEEEEEchhcCCHH---HHHHHHHHHhcCCc-EEEE
Confidence 35678999999999998643211 122222211 1 1147999999999997531 11122222222222 2357
Q ss_pred EeeeccCCCHHHHHHHHHHHH
Q 029929 156 ETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~ 176 (185)
++||+.+.|++++++.|.+..
T Consensus 74 ~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 74 HASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EeeccccccHHHHHHHHHHHH
Confidence 899999999999999997764
No 354
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.8e-08 Score=77.67 Aligned_cols=118 Identities=22% Similarity=0.202 Sum_probs=78.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-----CCccC-----------cceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-----NQYKA-----------TIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-----~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (185)
..-+|.+.-+-.+||||+-++++..... ..... ..+.+..+.-..+....+.+.++|||||-+|
T Consensus 38 k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDF 117 (721)
T KOG0465|consen 38 KIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDF 117 (721)
T ss_pred hhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeE
Confidence 3467888999999999999887533211 11011 1122232333333445788999999999999
Q ss_pred cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.......++-.|++++|+|+...-......-| .++.++ ++|.+..+||+|....
T Consensus 118 T~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~-rQ~~ry-------~vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 118 TFEVERALRVLDGAVLVLDAVAGVESQTETVW-RQMKRY-------NVPRICFINKMDRMGA 171 (721)
T ss_pred EEEehhhhhhccCeEEEEEcccceehhhHHHH-HHHHhc-------CCCeEEEEehhhhcCC
Confidence 99999999999999999998753222222222 222221 7899999999997554
No 355
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.81 E-value=9.2e-08 Score=73.36 Aligned_cols=134 Identities=16% Similarity=0.217 Sum_probs=81.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccC---------------------------------------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKA--------------------------------------------- 39 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~--------------------------------------------- 39 (185)
....+|+|+|...+||||.+..+....+.+ ....
T Consensus 306 DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~ 385 (980)
T KOG0447|consen 306 DHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIEL 385 (980)
T ss_pred ccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHH
Confidence 445799999999999999999986543321 1000
Q ss_pred --------cceeeeEEEEEEECCcEE-EEEEecCCC-------------hhhhcccccchhccCcEEEEEEECCChhhHH
Q 029929 40 --------TIGADFLTKEVQFEDRLF-TLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFD 97 (185)
Q Consensus 40 --------~~~~~~~~~~~~~~~~~~-~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~ 97 (185)
+.+.......+.+.+.+. ...++|+|| -+....+...+..+.+++|+|+--...+.-
T Consensus 386 RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE- 464 (980)
T KOG0447|consen 386 RMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE- 464 (980)
T ss_pred HHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh-
Confidence 011222222333334333 567889999 233345567778899999999954432211
Q ss_pred HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929 98 NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (185)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (185)
......+...+. +.+...|+|+||.|+... ....+..+++...
T Consensus 465 --RSnVTDLVsq~D---P~GrRTIfVLTKVDlAEk--nlA~PdRI~kIle 507 (980)
T KOG0447|consen 465 --RSIVTDLVSQMD---PHGRRTIFVLTKVDLAEK--NVASPSRIQQIIE 507 (980)
T ss_pred --hhhHHHHHHhcC---CCCCeeEEEEeecchhhh--ccCCHHHHHHHHh
Confidence 222233333333 347789999999999876 3455666776655
No 356
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.80 E-value=2e-08 Score=67.53 Aligned_cols=56 Identities=20% Similarity=0.321 Sum_probs=38.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
..++++++|.+|+|||||++++.+..... ..+..+.+.....+.++ ..+.++||||
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~-~~~~~~~T~~~~~~~~~---~~~~~iDtpG 169 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAK-VGNKPGVTKGIQWIKIS---PGIYLLDTPG 169 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcee-ecCCCCEEeeeEEEEec---CCEEEEECCC
Confidence 34799999999999999999999876532 12222233333334443 3567999999
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.80 E-value=1.4e-08 Score=69.49 Aligned_cols=53 Identities=19% Similarity=0.373 Sum_probs=36.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC---------CCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKF---------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
.+++++|.+|+|||||+|+|.+... .....++ .+.....+..+. .+.++||||
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPG--TTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCC--eeeeeEEEecCC---CCEEEeCcC
Confidence 5899999999999999999997542 2223333 333344444433 467899999
No 358
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4.2e-09 Score=74.04 Aligned_cols=119 Identities=20% Similarity=0.305 Sum_probs=72.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC----cceeeeEEEEEEECCcEEEEEEecCCCh--------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA----TIGADFLTKEVQFEDRLFTLQIWDTAGQ-------------- 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------------- 67 (185)
.-.|+|+.+|..|.|||||+..|++.++...+.+ +...........-.+..+++++.||.|-
T Consensus 40 GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Syk~iV 119 (406)
T KOG3859|consen 40 GFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSYKPIV 119 (406)
T ss_pred CceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCcccccchHH
Confidence 4569999999999999999999999887644333 3333333333334566778999999991
Q ss_pred ----hhhccccc---------chh--ccCcEEEEEEECCChhhHHHHHH-HHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 68 ----ERFQSLGV---------AFY--RGADCCVLVYDVNVMKSFDNLNN-WREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 68 ----~~~~~~~~---------~~~--~~~d~~i~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
..|....+ ..+ ...|+++|.+.++. .++..+.- .+..+. .++.+|-++-|.|...
T Consensus 120 dyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTG-H~LKslDLvtmk~Ld--------skVNIIPvIAKaDtis 190 (406)
T KOG3859|consen 120 DYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTG-HSLKSLDLVTMKKLD--------SKVNIIPVIAKADTIS 190 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCC-cchhHHHHHHHHHHh--------hhhhhHHHHHHhhhhh
Confidence 11111000 011 34688899888764 23322211 111111 1556888889999776
Q ss_pred CC
Q 029929 132 GN 133 (185)
Q Consensus 132 ~~ 133 (185)
.+
T Consensus 191 K~ 192 (406)
T KOG3859|consen 191 KE 192 (406)
T ss_pred HH
Confidence 43
No 359
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.78 E-value=1.7e-07 Score=65.72 Aligned_cols=87 Identities=14% Similarity=0.149 Sum_probs=52.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC--CCCCCcc-CcceeeeEEEEEEEC-CcEEEEEEecCCChhhhc------cccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYK-ATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQ------SLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~------~~~~ 75 (185)
....-|.|+|++++|||||+|.+++. .+..... ...+........... +....+.++||+|..... ....
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 45567899999999999999999988 5542221 112122222222221 234678999999943321 1122
Q ss_pred chhcc--CcEEEEEEECCC
Q 029929 76 AFYRG--ADCCVLVYDVNV 92 (185)
Q Consensus 76 ~~~~~--~d~~i~v~d~~~ 92 (185)
..+.. ++++||..+...
T Consensus 85 ~~l~~llss~~i~n~~~~~ 103 (224)
T cd01851 85 FALATLLSSVLIYNSWETI 103 (224)
T ss_pred HHHHHHHhCEEEEeccCcc
Confidence 33333 888888887765
No 360
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=6.5e-08 Score=64.03 Aligned_cols=84 Identities=18% Similarity=0.080 Sum_probs=54.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
|++++|+|+.++.+.... ++.. ..... .++|+++|+||+|+.... + ..+....+ ......+++.+||++
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~--~~~~~---~~~p~IiVlNK~Dl~~~~--~-~~~~~~~~-~~~~~~~ii~vSa~~ 69 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIER--VLIKE---KGKKLILVLNKADLVPKE--V-LRKWLAYL-RHSYPTIPFKISATN 69 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHH--HHHhc---CCCCEEEEEechhcCCHH--H-HHHHHHHH-HhhCCceEEEEeccC
Confidence 789999999887655421 2221 11111 167999999999996431 1 11111122 222236789999999
Q ss_pred CCCHHHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAKNA 176 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~ 176 (185)
+.|++++.+.|.+..
T Consensus 70 ~~gi~~L~~~i~~~~ 84 (155)
T cd01849 70 GQGIEKKESAFTKQT 84 (155)
T ss_pred CcChhhHHHHHHHHh
Confidence 999999999987754
No 361
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=3.2e-07 Score=71.90 Aligned_cols=145 Identities=20% Similarity=0.231 Sum_probs=80.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee----------------------------------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF---------------------------------------- 45 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~---------------------------------------- 45 (185)
+...+|++.|..++||||++|+++..+..+.....++..+
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 4557999999999999999999987665432222111000
Q ss_pred ----EEEEEEECCc----EEEEEEecCCChh---hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929 46 ----LTKEVQFEDR----LFTLQIWDTAGQE---RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114 (185)
Q Consensus 46 ----~~~~~~~~~~----~~~~~~~D~~g~~---~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (185)
-...+.-++. .-.+.++|.||.+ ....-...+...+|++|+|.++.+..+..+ ..++.... ..
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs----~~- 260 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVS----EE- 260 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhh----cc-
Confidence 0000110110 0145788999933 333334455578999999999987555444 23333332 21
Q ss_pred CCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-------CCcEEEeeec
Q 029929 115 PENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG-------NIPYFETSAK 160 (185)
Q Consensus 115 ~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~ 160 (185)
+..++|+.||.|.... ..+..+++......+. .-.++++|++
T Consensus 261 --KpniFIlnnkwDasas--e~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 261 --KPNIFILNNKWDASAS--EPECKEDVLKQIHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred --CCcEEEEechhhhhcc--cHHHHHHHHHHHHhcCcccHhhhcCeeEEEecc
Confidence 2235666688898764 2233333333322221 1247888865
No 362
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.76 E-value=5.4e-08 Score=70.42 Aligned_cols=101 Identities=22% Similarity=0.168 Sum_probs=66.8
Q ss_pred CCChh-hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (185)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 142 (185)
.|||- .........+..+|++++|+|+..+.+.+.. .+...+ . +.|+++|+||+|+.+.. . ....
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~-~i~~~l----~-----~kp~IiVlNK~DL~~~~--~--~~~~ 69 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNP-MIDEIR----G-----NKPRLIVLNKADLADPA--V--TKQW 69 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCCh-hHHHHH----C-----CCCEEEEEEccccCCHH--H--HHHH
Confidence 45643 3344556778899999999999876554321 111111 1 46999999999996431 1 1122
Q ss_pred HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
.......+ .+++.+|+.++.|++++++.+.+.+.+.
T Consensus 70 ~~~~~~~~-~~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 70 LKYFEEKG-IKALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 22222233 5789999999999999999998887654
No 363
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.74 E-value=4.2e-08 Score=70.95 Aligned_cols=56 Identities=23% Similarity=0.452 Sum_probs=39.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
..++++++|.+|+|||||+|++.+.... ....++++.. ...+.+.. .+.++||||.
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKG--QQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecc--eEEEEeCC---CEEEEECCCc
Confidence 4589999999999999999999977643 3333333332 33344332 4679999995
No 364
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.74 E-value=5e-08 Score=64.62 Aligned_cols=56 Identities=25% Similarity=0.286 Sum_probs=37.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
...+++++|.+|+|||||++++.+.... ...++.+.+.....+..+. .+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSA-STSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcc-ccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 3578999999999999999999965532 2333444333323222222 578999999
No 365
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.73 E-value=6.1e-08 Score=70.52 Aligned_cols=56 Identities=21% Similarity=0.446 Sum_probs=39.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
..++++++|.+|+|||||+|++.+... .....++.+.. ...+..+. .+.++||||.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~--~~~~~~~~---~~~l~DtPGi 176 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKA--QQWIKLGK---GLELLDTPGI 176 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEE--EEEEEeCC---cEEEEECCCc
Confidence 458999999999999999999998765 33334444333 33343332 4679999994
No 366
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.73 E-value=3.7e-08 Score=72.57 Aligned_cols=55 Identities=24% Similarity=0.438 Sum_probs=40.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
.++++|+|-||+|||||||+|.+.... ...+..|.+.....+..+.. +.++||||
T Consensus 132 ~~~v~vvG~PNVGKSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPG 186 (322)
T COG1161 132 KIRVGVVGYPNVGKSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPG 186 (322)
T ss_pred ceEEEEEcCCCCcHHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCC
Confidence 478999999999999999999988763 22233344555555555543 67899999
No 367
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.71 E-value=2.5e-08 Score=65.60 Aligned_cols=60 Identities=27% Similarity=0.311 Sum_probs=33.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
-.++++|+.|+|||||+|+|...... .....+..++.....+..+... .++||||-..+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCccc
Confidence 36789999999999999999976321 1111222223334444454433 477999955443
No 368
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.71 E-value=1.9e-08 Score=69.12 Aligned_cols=126 Identities=11% Similarity=0.135 Sum_probs=79.6
Q ss_pred ECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEE
Q 029929 52 FEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFV 121 (185)
Q Consensus 52 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~i 121 (185)
++-....+.++|.+|+...+.-|.+++.+.-.+++++..+. ....++...++..+...-... +.++|
T Consensus 194 fdl~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~---nssVI 270 (359)
T KOG0085|consen 194 FDLQKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQ---NSSVI 270 (359)
T ss_pred cchhhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhcccccc---CCceE
Confidence 33445567788999999989999999888877777665542 333444444445454433332 66899
Q ss_pred EEEeCCCCCCCC--------------ceeecHHHHHHHHH----hcC--CCc---EEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 122 VLGNKTDVDGGN--------------SRVVSEKKAKAWCA----SKG--NIP---YFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 122 iv~nK~Dl~~~~--------------~~~~~~~~~~~~~~----~~~--~~~---~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++||.|+.++. ......+..+.|+. ..+ .-+ -.++.|.+.+|+.-+|..+...++.
T Consensus 271 lFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq 350 (359)
T KOG0085|consen 271 LFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ 350 (359)
T ss_pred EEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHH
Confidence 999999986531 12222333333332 221 111 2457788889999999988887776
Q ss_pred cC
Q 029929 179 NE 180 (185)
Q Consensus 179 ~~ 180 (185)
.+
T Consensus 351 ~~ 352 (359)
T KOG0085|consen 351 LN 352 (359)
T ss_pred hh
Confidence 54
No 369
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.70 E-value=1.9e-07 Score=68.59 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=54.8
Q ss_pred EEEEEEecCCChhhhcc----cccch--------hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 56 LFTLQIWDTAGQERFQS----LGVAF--------YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~----~~~~~--------~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
.+.+.++||||...... ..... -...+..++|+|++... +.+.. ...+.+.. -+.-+|
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~~~-a~~f~~~~-------~~~giI 265 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NALSQ-AKAFHEAV-------GLTGII 265 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHHHH-HHHHHhhC-------CCCEEE
Confidence 46788999999432111 11111 12467889999998532 22221 12222111 145789
Q ss_pred EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 170 (185)
+||.|.... .-.+.......+ .|+.+++ +|++++++..
T Consensus 266 lTKlD~t~~------~G~~l~~~~~~~-~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 266 LTKLDGTAK------GGVVFAIADELG-IPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred EECCCCCCC------ccHHHHHHHHHC-CCEEEEe--CCCChhhCcc
Confidence 999996543 223333344444 8999988 7888877643
No 370
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.69 E-value=1e-07 Score=63.23 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
++++|..|+|||||++.+...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578999999999999998765
No 371
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.68 E-value=8.5e-08 Score=81.63 Aligned_cols=116 Identities=21% Similarity=0.261 Sum_probs=63.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCc----cC--cceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccc
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFSNQY----KA--TIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVA 76 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~ 76 (185)
.+|+|++|+||||++..- +..++-.. .. +.+.+. .....+.+ ..+++||+|.. .....|..
T Consensus 114 YlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~-~c~wwf~~---~avliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTR-NCDWWFTD---EAVLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCc-ccceEecC---CEEEEcCCCccccCCCcccccHHHHHH
Confidence 589999999999999876 33333111 01 111111 11122222 44688999921 11223444
Q ss_pred hh---------ccCcEEEEEEECCC-----hhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 77 FY---------RGADCCVLVYDVNV-----MKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 77 ~~---------~~~d~~i~v~d~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
++ +..|++|+++|+.+ ++.... ...+...+.+..... ....|+.+++||+|+...
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhhcC
Confidence 33 34899999999865 221111 122222333222222 227899999999999864
No 372
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.68 E-value=6.1e-08 Score=64.15 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=37.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
...+++++|.+|+|||||+|++.+... .....+.++..... .... ..+.++||||
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtPG 154 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQE--VKLD---NKIKLLDTPG 154 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEE--EEec---CCEEEEECCC
Confidence 457899999999999999999998653 23333444433332 2222 2577889998
No 373
>PRK14974 cell division protein FtsY; Provisional
Probab=98.68 E-value=3.8e-08 Score=72.61 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=54.7
Q ss_pred EEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 57 FTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
+.+.++||+|..... ...... ....|.+++|+|+.... ..+.+ ..+.... + .--+++||.|.
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a----~~f~~~~------~-~~giIlTKlD~ 291 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA----REFNEAV------G-IDGVILTKVDA 291 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH----HHHHhcC------C-CCEEEEeeecC
Confidence 468899999943211 111111 23578999999997532 22222 2222211 1 35788999998
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 170 (185)
..... .+...+...+ .|+.+++ +|++++++..
T Consensus 292 ~~~~G------~~ls~~~~~~-~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 292 DAKGG------AALSIAYVIG-KPILFLG--VGQGYDDLIP 323 (336)
T ss_pred CCCcc------HHHHHHHHHC-cCEEEEe--CCCChhhccc
Confidence 65422 2223333344 7888888 7898887754
No 374
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1.8e-08 Score=74.75 Aligned_cols=118 Identities=20% Similarity=0.238 Sum_probs=88.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC--------CCC--------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKF--------SNQ--------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (185)
...+|.++....+||||.-.++..... ... .....+.+..+..+.++..++.+.++||||+-+|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 345899999999999999988753211 111 1112346667777888888999999999999999
Q ss_pred cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
+-....+++-.|+++.|+|++..-....+--|.+. ...++|-+.++||+|....
T Consensus 116 ~leverclrvldgavav~dasagve~qtltvwrqa--------dk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 116 RLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQA--------DKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEHHHHHHHhcCeEEEEeccCCcccceeeeehhc--------cccCCchhhhhhhhhhhhh
Confidence 99999999999999999999875444444444332 2237899999999998654
No 375
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.65 E-value=7.1e-07 Score=64.33 Aligned_cols=96 Identities=15% Similarity=0.030 Sum_probs=55.5
Q ss_pred EEEEEEecCCChhhhcccc----cc---h-----hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 56 LFTLQIWDTAGQERFQSLG----VA---F-----YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~----~~---~-----~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
.+.+.++||||........ .. . -..+|.+++|+|++.. .+.+. ....+.+.. + +.-+|
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~-~~~~f~~~~------~-~~g~I 223 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALE-QAKVFNEAV------G-LTGII 223 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHH-HHHHHHhhC------C-CCEEE
Confidence 4678899999944322111 11 1 1248999999999752 22222 123332221 1 45789
Q ss_pred EeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHH
Q 029929 124 GNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 124 ~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 170 (185)
+||.|..... -.+.......+ .|+.+++ +|++++++..
T Consensus 224 lTKlDe~~~~------G~~l~~~~~~~-~Pi~~~~--~Gq~~~dl~~ 261 (272)
T TIGR00064 224 LTKLDGTAKG------GIILSIAYELK-LPIKFIG--VGEKIDDLAP 261 (272)
T ss_pred EEccCCCCCc------cHHHHHHHHHC-cCEEEEe--CCCChHhCcc
Confidence 9999976542 23333334444 7888888 7888777644
No 376
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=4.7e-08 Score=72.12 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=96.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCC------------------CC-----------CccCcceeeeEEEEEEECCc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF------------------SN-----------QYKATIGADFLTKEVQFEDR 55 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~------------------~~-----------~~~~~~~~~~~~~~~~~~~~ 55 (185)
+..+++++++|...+||||+-..+..... .+ .....-+-+.......+.-.
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 35578999999999999998765531100 00 00001112222333333444
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHH--HHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWRE--EFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
...+++.|+||+..+-..+.....++|..++|+++--. -.|+.--+-.. .+.+... -...|+++||+|-+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-----v~~lVv~vNKMddP 230 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDDP 230 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-----cceEEEEEEeccCC
Confidence 56788999999999998888888999999999988431 12222101111 1111111 23678999999977
Q ss_pred CCCceeecHHHH----HHHHHhc-----CCCcEEEeeeccCCCHHHHHH
Q 029929 131 GGNSRVVSEKKA----KAWCASK-----GNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 131 ~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~s~~~~~~i~~~~~ 170 (185)
..+-....++++ ..|.... ....++++|..+|.++++...
T Consensus 231 tvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 231 TVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 543333333333 3333322 246789999999999887553
No 377
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.62 E-value=1.4e-06 Score=66.22 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=38.2
Q ss_pred EEEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 56 LFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.+.+.++||+|..... ...... ....|.+++|+|+...... ......+.+.. .+.-+|+||.|-
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a---~~~a~~F~~~~-------~~~g~IlTKlD~ 251 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA---EAQAKAFKDSV-------DVGSVIITKLDG 251 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH---HHHHHHHHhcc-------CCcEEEEECccC
Confidence 4678999999933221 111111 2357889999998753222 22223332211 156788999997
Q ss_pred CCC
Q 029929 130 DGG 132 (185)
Q Consensus 130 ~~~ 132 (185)
...
T Consensus 252 ~ar 254 (429)
T TIGR01425 252 HAK 254 (429)
T ss_pred CCC
Confidence 643
No 378
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.62 E-value=2.1e-07 Score=67.75 Aligned_cols=101 Identities=20% Similarity=0.197 Sum_probs=67.0
Q ss_pred CCChh-hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929 64 TAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (185)
Q Consensus 64 ~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 142 (185)
.|||- .........+..+|++++|+|+..+.+.+. ..+... .. +.|+++|+||+|+.+. . ..+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~---~~-----~kp~iiVlNK~DL~~~---~-~~~~~ 72 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKI---IG-----NKPRLLILNKSDLADP---E-VTKKW 72 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHH---hC-----CCCEEEEEEchhcCCH---H-HHHHH
Confidence 56643 334445677889999999999987654332 111111 11 4699999999999642 1 11222
Q ss_pred HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
..+....+ .+++.+|++++.|++++.+.+.+.+...
T Consensus 73 ~~~~~~~~-~~vi~vSa~~~~gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 73 IEYFEEQG-IKALAINAKKGQGVKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHcC-CeEEEEECCCcccHHHHHHHHHHHHHHH
Confidence 22223333 6789999999999999999998887654
No 379
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.62 E-value=1.5e-07 Score=61.26 Aligned_cols=77 Identities=19% Similarity=0.137 Sum_probs=50.2
Q ss_pred cchhccCcEEEEEEECCChhhHH--HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFD--NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
...+..+|++++|+|+.++.+.. .+..++.. . . .++|+++|+||+|+..+. ......+.....+ .
T Consensus 6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~----~~k~~iivlNK~DL~~~~----~~~~~~~~~~~~~-~ 72 (141)
T cd01857 6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-D----PRKKNILLLNKADLLTEE----QRKAWAEYFKKEG-I 72 (141)
T ss_pred HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-c----CCCcEEEEEechhcCCHH----HHHHHHHHHHhcC-C
Confidence 34568899999999998876544 22222221 1 1 257999999999996431 1223334444444 6
Q ss_pred cEEEeeeccCCC
Q 029929 153 PYFETSAKEGFN 164 (185)
Q Consensus 153 ~~~~~s~~~~~~ 164 (185)
+++++||.++.+
T Consensus 73 ~ii~iSa~~~~~ 84 (141)
T cd01857 73 VVVFFSALKENA 84 (141)
T ss_pred eEEEEEecCCCc
Confidence 899999998763
No 380
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.59 E-value=1.7e-07 Score=65.66 Aligned_cols=75 Identities=12% Similarity=0.177 Sum_probs=52.8
Q ss_pred CCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-------hHHHHH---HHHHHHHhhcCCCCCCCCcEEE
Q 029929 53 EDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-------SFDNLN---NWREEFLIQASPSDPENFPFVV 122 (185)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------~~~~~~---~~~~~~~~~~~~~~~~~~p~ii 122 (185)
.-..+.++.+|.+||.+.+.-|.+++....++|+|+..+.-. +-..++ .++..++.+-.. ..+.+|+
T Consensus 198 qVdkv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL---~tisvIl 274 (379)
T KOG0099|consen 198 QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWL---RTISVIL 274 (379)
T ss_pred eccccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHH---hhhheeE
Confidence 334567889999999999999999999999999999887421 112222 233333333222 2568999
Q ss_pred EEeCCCCC
Q 029929 123 LGNKTDVD 130 (185)
Q Consensus 123 v~nK~Dl~ 130 (185)
++||.|+.
T Consensus 275 FLNKqDll 282 (379)
T KOG0099|consen 275 FLNKQDLL 282 (379)
T ss_pred EecHHHHH
Confidence 99999974
No 381
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.56 E-value=2.8e-06 Score=63.67 Aligned_cols=155 Identities=14% Similarity=0.146 Sum_probs=85.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC--------------CccCcce---eeeEE-------EEEEE-CCcEEEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN--------------QYKATIG---ADFLT-------KEVQF-EDRLFTLQI 61 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~--------------~~~~~~~---~~~~~-------~~~~~-~~~~~~~~~ 61 (185)
..+=|.|+||..+||||||.+|......+ -+++..| ++... ..+.+ ++..+++.+
T Consensus 16 GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRL 95 (492)
T PF09547_consen 16 GDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRL 95 (492)
T ss_pred CceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEE
Confidence 34678999999999999999996432211 1111111 11111 12223 456788999
Q ss_pred ecCCC--------h-----------hhhcccc----------cchh-ccC-cEEEEEEECCC----hhhHHHH-HHHHHH
Q 029929 62 WDTAG--------Q-----------ERFQSLG----------VAFY-RGA-DCCVLVYDVNV----MKSFDNL-NNWREE 105 (185)
Q Consensus 62 ~D~~g--------~-----------~~~~~~~----------~~~~-~~~-d~~i~v~d~~~----~~~~~~~-~~~~~~ 105 (185)
+|+.| + ..|.... ...+ .++ =++++.-|.+- ++.+..+ ++...+
T Consensus 96 iDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~E 175 (492)
T PF09547_consen 96 IDCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEE 175 (492)
T ss_pred EeecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHH
Confidence 99998 0 0011000 0001 122 25555556543 3444333 344444
Q ss_pred HHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--CCHHHHHHHHH
Q 029929 106 FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG--FNVEAAFECIA 173 (185)
Q Consensus 106 ~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~i~~~~~~i~ 173 (185)
+... ++|+++++|-.+-.. +...+...++...++ ++++++++..- +.+..++..+.
T Consensus 176 Lk~i-------gKPFvillNs~~P~s----~et~~L~~eL~ekY~-vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 176 LKEI-------GKPFVILLNSTKPYS----EETQELAEELEEKYD-VPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred HHHh-------CCCEEEEEeCCCCCC----HHHHHHHHHHHHHhC-CcEEEeehHHcCHHHHHHHHHHHH
Confidence 4433 779999999887443 345556666666776 89988887643 34544444443
No 382
>PRK01889 GTPase RsgA; Reviewed
Probab=98.52 E-value=9e-07 Score=66.25 Aligned_cols=85 Identities=14% Similarity=0.130 Sum_probs=57.1
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
...++|.+++|+++..+-....+.+++..... . +++.++|+||+||.+. .....+....+ ...++++.
T Consensus 109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~---~i~piIVLNK~DL~~~--~~~~~~~~~~~---~~g~~Vi~ 176 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE----S---GAEPVIVLTKADLCED--AEEKIAEVEAL---APGVPVLA 176 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH----c---CCCEEEEEEChhcCCC--HHHHHHHHHHh---CCCCcEEE
Confidence 35789999999999743333344555444332 2 6678999999999753 11111222222 23479999
Q ss_pred eeeccCCCHHHHHHHHH
Q 029929 157 TSAKEGFNVEAAFECIA 173 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~ 173 (185)
+|++++.|++++..+|.
T Consensus 177 vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 177 VSALDGEGLDVLAAWLS 193 (356)
T ss_pred EECCCCccHHHHHHHhh
Confidence 99999999999998874
No 383
>PRK12288 GTPase RsgA; Reviewed
Probab=98.51 E-value=3.2e-07 Score=68.22 Aligned_cols=58 Identities=24% Similarity=0.296 Sum_probs=35.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC-CCc-----cCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFS-NQY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
++|+|.+|+|||||+|+|.+.... ... ..+..++.....+.+.+.. .++||||-..+.
T Consensus 208 ~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~ 271 (347)
T PRK12288 208 SIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG 271 (347)
T ss_pred EEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence 689999999999999999876432 111 1111122233334444332 378999965544
No 384
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=3.7e-07 Score=68.54 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=35.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC------CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
.+++++|.+|+|||||+|+|..... .....|+++.+ ...+.+++. ..++||||-
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~--~~~~~l~~~---~~l~DTPGi 220 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLD--KIEIPLDDG---SFLYDTPGI 220 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccce--eEEEEcCCC---cEEEECCCc
Confidence 4799999999999999999986431 12333443333 333444332 358899994
No 385
>PRK13796 GTPase YqeH; Provisional
Probab=98.46 E-value=1.6e-06 Score=65.13 Aligned_cols=93 Identities=24% Similarity=0.290 Sum_probs=58.6
Q ss_pred hhcccccchhccCc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH----H
Q 029929 69 RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA----K 143 (185)
Q Consensus 69 ~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~ 143 (185)
.+..... .+...+ ++++|+|+.+.. ..|...+.+... +.|+++|+||+|+.... ...+.+ .
T Consensus 58 ~~~~~l~-~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~~-----~kpviLViNK~DLl~~~---~~~~~i~~~l~ 123 (365)
T PRK13796 58 DFLKLLN-GIGDSDALVVNVVDIFDFN-----GSWIPGLHRFVG-----NNPVLLVGNKADLLPKS---VKKNKVKNWLR 123 (365)
T ss_pred HHHHHHH-hhcccCcEEEEEEECccCC-----CchhHHHHHHhC-----CCCEEEEEEchhhCCCc---cCHHHHHHHHH
Confidence 4444333 334455 889999998733 223333433322 55899999999997532 222222 2
Q ss_pred HHHHhcCC--CcEEEeeeccCCCHHHHHHHHHHH
Q 029929 144 AWCASKGN--IPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 144 ~~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
.+....+. ..++.+||+++.|++++++.|.+.
T Consensus 124 ~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 124 QEAKELGLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred HHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 33333331 268999999999999999999765
No 386
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.46 E-value=4.4e-07 Score=64.48 Aligned_cols=23 Identities=39% Similarity=0.543 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|+|||||+|++.+..
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhh
Confidence 67899999999999999998753
No 387
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.46 E-value=5.7e-07 Score=67.48 Aligned_cols=54 Identities=26% Similarity=0.419 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCC------CCCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKF------SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
.+++++|.+|+|||||+|++.+... .....|.++.. ...+..++ .+.++||||-
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~~~---~~~l~DtPG~ 214 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPLDD---GHSLYDTPGI 214 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEeCC---CCEEEECCCC
Confidence 4899999999999999999997542 22333443333 33444422 2458899993
No 388
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.45 E-value=3.3e-05 Score=50.54 Aligned_cols=148 Identities=19% Similarity=0.168 Sum_probs=74.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCC-C-------------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTA-G------------------- 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-g------------------- 66 (185)
..++|.+.|+||+||||++.++.+.-.... ..-..+....+.-++...-+.+.|+. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g---~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKG---YKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcC---ceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 458999999999999999988875432211 11122333344444444455555554 2
Q ss_pred --hhhhc----ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH
Q 029929 67 --QERFQ----SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK 140 (185)
Q Consensus 67 --~~~~~----~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~ 140 (185)
.+.+. ......++.+|++| +|---|-.+. ...+...+...+.. ..|++.++.+.+-.+ ..+
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvII--IDEIGpMElk-s~~f~~~ve~vl~~----~kpliatlHrrsr~P------~v~ 147 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVII--IDEIGPMELK-SKKFREAVEEVLKS----GKPLIATLHRRSRHP------LVQ 147 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEE--Eecccchhhc-cHHHHHHHHHHhcC----CCcEEEEEecccCCh------HHH
Confidence 11111 11222334456554 4544332221 13444444443322 568888887665311 122
Q ss_pred HHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 141 KAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 141 ~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.+ ...+ .++-. .+..|-+.+++.|...+..
T Consensus 148 ~i----k~~~--~v~v~--lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 148 RI----KKLG--GVYVF--LTPENRNRILNEILSVLKG 177 (179)
T ss_pred Hh----hhcC--CEEEE--EccchhhHHHHHHHHHhcc
Confidence 22 2233 22222 5666666888877776543
No 389
>PRK12289 GTPase RsgA; Reviewed
Probab=98.45 E-value=4.3e-07 Score=67.61 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=33.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC-CCccCc-----ceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFS-NQYKAT-----IGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
++|+|++|+|||||+|+|...... ....+. ..++.....+...+.. .++||||-
T Consensus 175 ~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~ 234 (352)
T PRK12289 175 TVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGF 234 (352)
T ss_pred EEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCc
Confidence 799999999999999999865422 111111 1122333344443333 47899994
No 390
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=98.39 E-value=1.9e-06 Score=58.58 Aligned_cols=112 Identities=13% Similarity=0.160 Sum_probs=64.4
Q ss_pred EEEEecCCChhhhcccc---c---chhcc---CcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 58 TLQIWDTAGQERFQSLG---V---AFYRG---ADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 58 ~~~~~D~~g~~~~~~~~---~---~~~~~---~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
...++|+|||-+..... . ..+.+ -=+++|++|..= -++..-+...+..+..+... .+|.|=|++|+
T Consensus 99 dylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~l----E~P~INvlsKM 174 (273)
T KOG1534|consen 99 DYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISL----EVPHINVLSKM 174 (273)
T ss_pred CEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHh----cCcchhhhhHH
Confidence 34578999965433221 1 11111 235667777643 33444445555555555544 67999999999
Q ss_pred CCCCCCceeecHHH-------------------------------HHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 128 DVDGGNSRVVSEKK-------------------------------AKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 128 Dl~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
||... ..+++ +..+...++-..|++....+.+.++.++..|-.++
T Consensus 175 DLlk~----~~k~~l~~Fl~~d~~~l~~~~~~~~~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~ai 250 (273)
T KOG1534|consen 175 DLLKD----KNKKELERFLNPDEYLLLEDSEINLRSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAI 250 (273)
T ss_pred HHhhh----hhHHHHHHhcCCchhhhhcccccccccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHH
Confidence 98754 11111 11122233445678888888888888887776665
Q ss_pred h
Q 029929 177 L 177 (185)
Q Consensus 177 ~ 177 (185)
.
T Consensus 251 Q 251 (273)
T KOG1534|consen 251 Q 251 (273)
T ss_pred H
Confidence 4
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.33 E-value=1.2e-06 Score=63.11 Aligned_cols=59 Identities=24% Similarity=0.330 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
-.+++|+.|+|||||+|+|.... .......+..++.....+.+++.+. ++||||-.++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~---iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGW---IIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCE---EEeCCCCCccC
Confidence 46789999999999999997532 1222223333445566666654443 67999955443
No 392
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=2.1e-06 Score=72.11 Aligned_cols=117 Identities=21% Similarity=0.249 Sum_probs=61.3
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCC--CCcc--CcceeeeEEEEEEECCcEEEEEEecCCC----hh----hhcccccch-
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFS--NQYK--ATIGADFLTKEVQFEDRLFTLQIWDTAG----QE----RFQSLGVAF- 77 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~~g----~~----~~~~~~~~~- 77 (185)
-+|+|++|+||||++..- +..++ .... ...+........-+.+ ..+++||.| ++ .....|..+
T Consensus 128 y~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cdwwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~fL 203 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCDWWFTD---EAVLIDTAGRYITQDSADEVDRAEWLGFL 203 (1188)
T ss_pred eEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccCccccc---ceEEEcCCcceecccCcchhhHHHHHHHH
Confidence 478999999999988543 22222 1100 0000110111122222 456789999 21 222334433
Q ss_pred --------hccCcEEEEEEECCC-----hhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 78 --------YRGADCCVLVYDVNV-----MKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 78 --------~~~~d~~i~v~d~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.+-.|++|+.+|+.+ +..-++ +......+.+... ...-..|+.+++||.|+...
T Consensus 204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~-tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE-TLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHH-hhccCCceEEEEeccccccc
Confidence 245799999999865 111111 2222232333221 22226799999999999874
No 393
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=7.4e-06 Score=61.36 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.++++|++|+||||++.+|...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998653
No 394
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.28 E-value=3.9e-06 Score=57.61 Aligned_cols=89 Identities=17% Similarity=0.122 Sum_probs=48.5
Q ss_pred EEEEEecCCChhhhc----ccccchh--ccCcEEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 57 FTLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
+.+.++||+|..... .....+. ...+-+++|++++.. +..+.+..++. .+. +-=+++||.|-
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~----~~~-------~~~lIlTKlDe 152 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYE----AFG-------IDGLILTKLDE 152 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHH----HSS-------TCEEEEESTTS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhh----ccc-------CceEEEEeecC
Confidence 568899999933221 1122222 257789999999863 33333333322 221 23567999997
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
... .-.+.......+ .|+-.++ +|+++
T Consensus 153 t~~------~G~~l~~~~~~~-~Pi~~it--~Gq~V 179 (196)
T PF00448_consen 153 TAR------LGALLSLAYESG-LPISYIT--TGQRV 179 (196)
T ss_dssp SST------THHHHHHHHHHT-SEEEEEE--SSSST
T ss_pred CCC------cccceeHHHHhC-CCeEEEE--CCCCh
Confidence 653 233444444454 6777666 45554
No 395
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.26 E-value=2.6e-06 Score=61.99 Aligned_cols=59 Identities=20% Similarity=0.217 Sum_probs=36.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCC-cc-----CcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQ-YK-----ATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (185)
-.++++|++|+|||||+|.|.+...... .. .+...+.....+...+.. .++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCcc
Confidence 4689999999999999999987643211 01 111122223334443222 47899997554
No 396
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.26 E-value=1.3e-06 Score=66.73 Aligned_cols=86 Identities=20% Similarity=0.080 Sum_probs=46.2
Q ss_pred EEEEEecCCChhhhccc----cc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 57 FTLQIWDTAGQERFQSL----GV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~----~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
..+.++||+|....... .. ..+..+|.+++|+|++... ........+.... + ..-+|+||.|-.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l------~-i~gvIlTKlD~~ 245 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV------G-IGGIIITKLDGT 245 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC------C-CCEEEEecccCC
Confidence 36789999994332211 11 1234688999999987632 2122223232111 1 235788999975
Q ss_pred CCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 131 GGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.. .-.+.......+ .|+.+++.
T Consensus 246 a~------~G~~ls~~~~~~-~Pi~fig~ 267 (437)
T PRK00771 246 AK------GGGALSAVAETG-APIKFIGT 267 (437)
T ss_pred Cc------ccHHHHHHHHHC-cCEEEEec
Confidence 43 223333444444 67766654
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.24 E-value=1.2e-05 Score=54.11 Aligned_cols=67 Identities=24% Similarity=0.098 Sum_probs=37.7
Q ss_pred EEEEEEecCCChhhh----cccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 56 LFTLQIWDTAGQERF----QSLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.+.+.++|++|.... ........ ...+.+++|+|+...... ......+.+.. + ..-+++||.|.
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~---~~~~~~~~~~~------~-~~~viltk~D~ 151 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA---VNQAKAFNEAL------G-ITGVILTKLDG 151 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH---HHHHHHHHhhC------C-CCEEEEECCcC
Confidence 345788999995322 11111111 348999999998753321 22333332222 2 24677899997
Q ss_pred CCC
Q 029929 130 DGG 132 (185)
Q Consensus 130 ~~~ 132 (185)
...
T Consensus 152 ~~~ 154 (173)
T cd03115 152 DAR 154 (173)
T ss_pred CCC
Confidence 654
No 398
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=98.23 E-value=4.1e-06 Score=56.74 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=44.0
Q ss_pred EEEEEecCCChhhhccc--ccch---hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 57 FTLQIWDTAGQERFQSL--GVAF---YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~--~~~~---~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
....++++.|....... .... .-..+.+|.|+|+.+-.........+. .+... .=++++||+|+.+
T Consensus 85 ~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~---~Qi~~------ADvIvlnK~D~~~ 155 (178)
T PF02492_consen 85 PDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLR---EQIAF------ADVIVLNKIDLVS 155 (178)
T ss_dssp -SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHH---HHHCT-------SEEEEE-GGGHH
T ss_pred cCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhh---hcchh------cCEEEEeccccCC
Confidence 45677788884433333 0111 124688999999976433333322222 22222 3389999999986
Q ss_pred CCceeecHHHHHHHHHhc-CCCcEE
Q 029929 132 GNSRVVSEKKAKAWCASK-GNIPYF 155 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~ 155 (185)
.. ...+..++..+.. +.++++
T Consensus 156 ~~---~~i~~~~~~ir~lnp~a~Iv 177 (178)
T PF02492_consen 156 DE---QKIERVREMIRELNPKAPIV 177 (178)
T ss_dssp HH-----HHHHHHHHHHH-TTSEEE
T ss_pred hh---hHHHHHHHHHHHHCCCCEEe
Confidence 42 1224444444433 335554
No 399
>PRK00098 GTPase RsgA; Reviewed
Probab=98.22 E-value=3.3e-06 Score=61.83 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|+|||||+|+|.+..
T Consensus 166 ~~~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCCHHHHHHHHhCCc
Confidence 57899999999999999998764
No 400
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.22 E-value=3.2e-05 Score=60.20 Aligned_cols=91 Identities=23% Similarity=0.225 Sum_probs=48.0
Q ss_pred EEEEEEecCCChhhhcccccc---hh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVA---FY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~---~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
.+.+.++||+|.......... .+ ......++|++.+. +...+......+.. ..+.-+|+||.|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAts--s~~Dl~eii~~f~~--------~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANA--HFSDLDEVVRRFAH--------AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCC--ChhHHHHHHHHHHh--------hCCeEEEEecCcCc
Confidence 467889999994322211000 01 11234567777764 23333333333321 12567999999975
Q ss_pred CCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
.. .-.+.......+ .++.+++ +|+.+
T Consensus 498 ~~------lG~aLsv~~~~~-LPI~yvt--~GQ~V 523 (559)
T PRK12727 498 GR------FGSALSVVVDHQ-MPITWVT--DGQRV 523 (559)
T ss_pred cc------hhHHHHHHHHhC-CCEEEEe--CCCCc
Confidence 43 334444445554 6777776 44444
No 401
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.21 E-value=1.8e-05 Score=51.90 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=36.0
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
.+.+.++||+|.... ...++..+|.++++....--+....+ + ..+. ...-++++||+|
T Consensus 91 ~~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~-k--~~~~---------~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAI-K--AGIM---------EIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHh-h--hhHh---------hhcCEEEEeCCC
Confidence 467889999995422 23477889999998877732222211 1 1111 224589999997
No 402
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=98.20 E-value=4.5e-06 Score=63.78 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=76.6
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCC----------------CCccCcceeeeEEEEE--E------------EC
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS----------------NQYKATIGADFLTKEV--Q------------FE 53 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~----------------~~~~~~~~~~~~~~~~--~------------~~ 53 (185)
++.+..++.|+.+...|||||-.+|..+-.. +.....++..-..... . -+
T Consensus 15 k~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d 94 (842)
T KOG0469|consen 15 KKKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD 94 (842)
T ss_pred cccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence 4566778999999999999999998643211 1111111111111111 1 13
Q ss_pred CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+..+.+.++|.||+-+|.+.....++-.|++++|+|.-+.-....---+.+.+.+ .+.-+++.||.|..
T Consensus 95 ~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E--------RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 95 GNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE--------RIKPVLVMNKMDRA 163 (842)
T ss_pred CcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh--------hccceEEeehhhHH
Confidence 4568899999999999999999999999999999998763222221112222321 33457889999953
No 403
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.19 E-value=4.2e-05 Score=58.66 Aligned_cols=91 Identities=18% Similarity=0.127 Sum_probs=48.9
Q ss_pred EEEEEEecCCChhhhc----ccccchhc---cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 56 LFTLQIWDTAGQERFQ----SLGVAFYR---GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
.+.+.++||+|..... .....++. ...-+++|++++.. ...+......+ ... + +--+++||.|
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f----~~~---~-~~~vI~TKlD 368 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHF----SRL---P-LDGLIFTKLD 368 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHh----CCC---C-CCEEEEeccc
Confidence 3577899999943221 12222333 23466788888642 22222333333 211 1 2368899999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
-... .-.+..+....+ .|+.+++ +|+++
T Consensus 369 et~~------~G~i~~~~~~~~-lPv~yit--~Gq~V 396 (424)
T PRK05703 369 ETSS------LGSILSLLIESG-LPISYLT--NGQRV 396 (424)
T ss_pred cccc------ccHHHHHHHHHC-CCEEEEe--CCCCC
Confidence 7543 224555555555 7777776 44543
No 404
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=98.19 E-value=5.1e-05 Score=55.95 Aligned_cols=90 Identities=20% Similarity=0.024 Sum_probs=49.4
Q ss_pred EEEEEecCCChhhhcccccc--------hhccCcEEEEEEECCChhh-HHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 57 FTLQIWDTAGQERFQSLGVA--------FYRGADCCVLVYDVNVMKS-FDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
+...++++.|...-...... -.-..|.++-|+|+.+-.. ..... ..+..+... -=+|++||.
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~---~~~~~Qia~------AD~ivlNK~ 155 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA---ELAEDQLAF------ADVIVLNKT 155 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH---HHHHHHHHh------CcEEEEecc
Confidence 45567788883222111111 1124688999999986322 22122 222222222 238999999
Q ss_pred CCCCCCceeecHHHHHHHHHhc-CCCcEEEeee
Q 029929 128 DVDGGNSRVVSEKKAKAWCASK-GNIPYFETSA 159 (185)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~ 159 (185)
|+.... ..+..+...... +.++++.++.
T Consensus 156 Dlv~~~----~l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 156 DLVDAE----ELEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred cCCCHH----HHHHHHHHHHHhCCCCeEEEccc
Confidence 999853 244444444443 4577888776
No 405
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.19 E-value=0.00013 Score=49.37 Aligned_cols=85 Identities=24% Similarity=0.265 Sum_probs=54.4
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 134 (185)
..+.+.++|+|+.... .....+..+|.+++++..+.. +...+..+.+.+... +.|+.+|+||+|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~-------~~~~~vV~N~~~~~~~-- 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF-------GIPVGVVINKYDLNDE-- 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc-------CCCEEEEEeCCCCCcc--
Confidence 3567899999974322 233456889999999988743 444555555544321 4578899999986432
Q ss_pred eeecHHHHHHHHHhcCCCcEE
Q 029929 135 RVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~ 155 (185)
..++..++.+..+ .+++
T Consensus 159 ---~~~~~~~~~~~~~-~~vl 175 (179)
T cd03110 159 ---IAEEIEDYCEEEG-IPIL 175 (179)
T ss_pred ---hHHHHHHHHHHcC-CCeE
Confidence 3445666666655 5554
No 406
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.17 E-value=1e-05 Score=61.82 Aligned_cols=87 Identities=23% Similarity=0.091 Sum_probs=47.9
Q ss_pred EEEEEEecCCChhhhc----ccccc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 56 LFTLQIWDTAGQERFQ----SLGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.+.+.++||+|..... ..... ..-..|.+++|+|+... ..+..+...+..... ..-+|+||.|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg---q~~~~~a~~f~~~v~-------i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG---QDAVNTAKTFNERLG-------LTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch---HHHHHHHHHHHhhCC-------CCEEEEeCccC
Confidence 3568899999942211 11111 12357889999998743 333334444433221 23577999995
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.... -.+.......+ .|+.+++.
T Consensus 252 ~~~~------G~~lsi~~~~~-~PI~fi~~ 274 (428)
T TIGR00959 252 DARG------GAALSVRSVTG-KPIKFIGV 274 (428)
T ss_pred cccc------cHHHHHHHHHC-cCEEEEeC
Confidence 4321 12445555555 67766654
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=98.17 E-value=1.2e-05 Score=61.49 Aligned_cols=87 Identities=23% Similarity=0.094 Sum_probs=46.4
Q ss_pred EEEEEEecCCChhhh----cccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 56 LFTLQIWDTAGQERF----QSLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.+.+.++||+|.... ....... .-..+.+++|+|+... ..+......+.... + ..-+|+||.|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g---q~av~~a~~F~~~~------~-i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG---QDAVNTAKAFNEAL------G-LTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH---HHHHHHHHHHHhhC------C-CCEEEEeCccC
Confidence 356889999993321 1111111 1256788999998742 23333334443221 1 23577899996
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
..... .+.......+ .|+.+++.
T Consensus 253 ~~rgG------~alsi~~~~~-~PI~fig~ 275 (433)
T PRK10867 253 DARGG------AALSIRAVTG-KPIKFIGT 275 (433)
T ss_pred ccccc------HHHHHHHHHC-cCEEEEeC
Confidence 43321 2444444455 67766654
No 408
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.16 E-value=2.3e-05 Score=52.48 Aligned_cols=22 Identities=36% Similarity=0.756 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|++.|++|+|||||++++...
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.14 E-value=2.3e-05 Score=59.64 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.++++|+.|+||||++..|.+.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999987653
No 410
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.13 E-value=6.3e-05 Score=56.64 Aligned_cols=134 Identities=16% Similarity=0.152 Sum_probs=68.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC---------CCccC------------cceeeeEEEEE--E----E---C-CcE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS---------NQYKA------------TIGADFLTKEV--Q----F---E-DRL 56 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~---------~~~~~------------~~~~~~~~~~~--~----~---~-~~~ 56 (185)
+..|+++|+.|+||||++..|...-.. .+... ..+.......- . + . ...
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 357999999999999999988532110 00000 00011100000 0 0 0 013
Q ss_pred EEEEEecCCChhhhcc----cccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 57 FTLQIWDTAGQERFQS----LGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~----~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+.+.++||+|...... .....+ ...+.+++|+|++.. ...+......+. .. + .-=+++||.|-.
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~----~~---~-idglI~TKLDET 390 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK----DI---H-IDGIVFTKFDET 390 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhc----CC---C-CCEEEEEcccCC
Confidence 5788999999432111 122222 235778899988632 122223333332 11 1 346889999976
Q ss_pred CCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 131 GGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
.. .-.+.......+ .|+.+++
T Consensus 391 ~k------~G~iLni~~~~~-lPIsyit 411 (436)
T PRK11889 391 AS------SGELLKIPAVSS-APIVLMT 411 (436)
T ss_pred CC------ccHHHHHHHHHC-cCEEEEe
Confidence 53 223444444454 6776666
No 411
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=98.11 E-value=9e-05 Score=54.74 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+|.|.-|||||||++++...
T Consensus 5 pv~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred CEEEEEECCCCCHHHHHHHHHhc
Confidence 34567799999999999999854
No 412
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.05 E-value=7.2e-06 Score=62.62 Aligned_cols=54 Identities=22% Similarity=0.236 Sum_probs=37.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
.+.|.++|-||+||||+||+|.+.+.. .+..|+.+ ..-..+.+. -.+.+-|+||
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkT--KHFQTi~ls---~~v~LCDCPG 368 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKT--KHFQTIFLS---PSVCLCDCPG 368 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCc--ceeEEEEcC---CCceecCCCC
Confidence 589999999999999999999988744 23333333 333333322 2556779999
No 413
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.04 E-value=4.2e-05 Score=62.11 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=70.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCC-CCc--cCcceeeeEE----------------EEEEE-----------CCcEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFS-NQY--KATIGADFLT----------------KEVQF-----------EDRLFTL 59 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~-~~~--~~~~~~~~~~----------------~~~~~-----------~~~~~~~ 59 (185)
-++++|+.|+||||++..|...... ... ....+.+.+. ..... .-..+.+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~D~ 266 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDKHL 266 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCCCE
Confidence 5789999999999999988753211 000 0000000000 00000 0123467
Q ss_pred EEecCCChhhh----cccccch--hccCcEEEEEEECCC-hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 60 QIWDTAGQERF----QSLGVAF--YRGADCCVLVYDVNV-MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 60 ~~~D~~g~~~~----~~~~~~~--~~~~d~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.++||+|.... ....... ....+-.++|+|++. .+.+.. ..+.+...... -+-=+|+||.|-...
T Consensus 267 VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~---i~~~f~~~~~~-----~i~glIlTKLDEt~~ 338 (767)
T PRK14723 267 VLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNE---VVHAYRHGAGE-----DVDGCIITKLDEATH 338 (767)
T ss_pred EEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHH---HHHHHhhcccC-----CCCEEEEeccCCCCC
Confidence 89999992211 1111111 123567889999874 233332 22333211000 133578999997653
Q ss_pred CceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 133 NSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
.-.+..+....+ .|+.+++ +|+++
T Consensus 339 ------~G~iL~i~~~~~-lPI~yit--~GQ~V 362 (767)
T PRK14723 339 ------LGPALDTVIRHR-LPVHYVS--TGQKV 362 (767)
T ss_pred ------ccHHHHHHHHHC-CCeEEEe--cCCCC
Confidence 223444444454 7777776 45555
No 414
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=3.6e-05 Score=57.15 Aligned_cols=119 Identities=19% Similarity=0.194 Sum_probs=62.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc---------------------ceeeeEEEEEE-----------
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---------------------IGADFLTKEVQ----------- 51 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~---------------------~~~~~~~~~~~----------- 51 (185)
.+..+--|+++|..|+||||.+-.+....-...+... ....++.....
T Consensus 97 ~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv 176 (483)
T KOG0780|consen 97 KKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGV 176 (483)
T ss_pred ccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHH
Confidence 3455667899999999999988776422111110000 01111111000
Q ss_pred --ECCcEEEEEEecCCChhh-hcccccc-----hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 52 --FEDRLFTLQIWDTAGQER-FQSLGVA-----FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 52 --~~~~~~~~~~~D~~g~~~-~~~~~~~-----~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
+....+.+.++||+|... ..++... -.-..|-+|+|.|++-....+. ....+.+.... --++
T Consensus 177 ~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~---Qa~aFk~~vdv-------g~vI 246 (483)
T KOG0780|consen 177 DRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEA---QARAFKETVDV-------GAVI 246 (483)
T ss_pred HHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHH---HHHHHHHhhcc-------ceEE
Confidence 123467889999999221 1121111 1235899999999986443333 22333222111 2456
Q ss_pred EeCCCCCCC
Q 029929 124 GNKTDVDGG 132 (185)
Q Consensus 124 ~nK~Dl~~~ 132 (185)
+||.|-...
T Consensus 247 lTKlDGhak 255 (483)
T KOG0780|consen 247 LTKLDGHAK 255 (483)
T ss_pred EEecccCCC
Confidence 788886543
No 415
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.03 E-value=0.00014 Score=55.02 Aligned_cols=91 Identities=15% Similarity=0.040 Sum_probs=49.0
Q ss_pred EEEEEEecCCChhhhc----ccccchhcc--Cc-EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 56 LFTLQIWDTAGQERFQ----SLGVAFYRG--AD-CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~----~~~~~~~~~--~d-~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
.+.+.++||+|..... ......+.. .+ -.++|+|++.. ...+...+..+. .. + +-=+++||.|
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~----~~---~-~~~~I~TKlD 323 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFS----PF---S-YKTVIFTKLD 323 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhc----CC---C-CCEEEEEecc
Confidence 4678899999943221 112222222 23 57899999863 233333333331 11 1 3468899999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
-... .-.+..+....+ .|+.+++ +|+++
T Consensus 324 et~~------~G~~l~~~~~~~-~Pi~yit--~Gq~v 351 (388)
T PRK12723 324 ETTC------VGNLISLIYEMR-KEVSYVT--DGQIV 351 (388)
T ss_pred CCCc------chHHHHHHHHHC-CCEEEEe--CCCCC
Confidence 7653 233444444444 6776666 45555
No 416
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.02 E-value=5.3e-05 Score=54.85 Aligned_cols=107 Identities=14% Similarity=0.245 Sum_probs=63.4
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------------
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------------- 66 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------------- 66 (185)
++.+..+++++|++|.|||+++++|........ .+.. . ...+..+.+|.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~-~------------~~PVv~vq~P~~p~~~~~Y~~IL~~lga 122 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDA-E------------RIPVVYVQMPPEPDERRFYSAILEALGA 122 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCCCCC-CCCC-c------------cccEEEEecCCCCChHHHHHHHHHHhCc
Confidence 345678999999999999999999997653321 1111 0 11222333333
Q ss_pred -------hhhhcccccchhccCcEEEEEEECCCh---hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 67 -------QERFQSLGVAFYRGADCCVLVYDVNVM---KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 67 -------~~~~~~~~~~~~~~~d~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
...........++...+=++++|--+. .+...-..++..+....... ++|+|.++++-
T Consensus 123 P~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL---~ipiV~vGt~~ 190 (302)
T PF05621_consen 123 PYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL---QIPIVGVGTRE 190 (302)
T ss_pred ccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc---CCCeEEeccHH
Confidence 112223334566778888999996542 22333344555555444433 88999998764
No 417
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.02 E-value=4.4e-05 Score=59.13 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++++|+.|+||||++..|..
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 588999999999999999874
No 418
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.00 E-value=7.5e-05 Score=53.98 Aligned_cols=90 Identities=20% Similarity=0.115 Sum_probs=61.9
Q ss_pred cchhccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCc
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIP 153 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (185)
..-+.+.|-+++|+.+.+|+--. .+.+++-.. ... ++..+|++||+||........ +.........+ ++
T Consensus 74 Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~---gi~pvIvlnK~DL~~~~~~~~--~~~~~~y~~~g-y~ 143 (301)
T COG1162 74 RPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAG---GIEPVIVLNKIDLLDDEEAAV--KELLREYEDIG-YP 143 (301)
T ss_pred CCcccccceEEEEEeccCCCCCHHHHHHHHHHH----HHc---CCcEEEEEEccccCcchHHHH--HHHHHHHHhCC-ee
Confidence 33345578888888888865433 334444333 222 667788899999997633332 45555556666 99
Q ss_pred EEEeeeccCCCHHHHHHHHHH
Q 029929 154 YFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~ 174 (185)
++.+|++++.+++++.+++..
T Consensus 144 v~~~s~~~~~~~~~l~~~l~~ 164 (301)
T COG1162 144 VLFVSAKNGDGLEELAELLAG 164 (301)
T ss_pred EEEecCcCcccHHHHHHHhcC
Confidence 999999999999999988754
No 419
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=98.00 E-value=4.3e-05 Score=40.92 Aligned_cols=45 Identities=24% Similarity=0.202 Sum_probs=27.4
Q ss_pred ccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 79 RGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
+-.++++|++|++... +.+.-...++.+...+. +.|+++|+||+|
T Consensus 12 hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~-----~~P~i~V~nK~D 58 (58)
T PF06858_consen 12 HLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFP-----NKPVIVVLNKID 58 (58)
T ss_dssp GT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTT-----TS-EEEEE--TT
T ss_pred hhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcC-----CCCEEEEEeccC
Confidence 4478999999999743 33443456666766654 669999999998
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.96 E-value=0.00011 Score=55.14 Aligned_cols=132 Identities=19% Similarity=0.203 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc---ceeeeEEEE-----------------EEE----------CCcEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT---IGADFLTKE-----------------VQF----------EDRLFT 58 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~---~~~~~~~~~-----------------~~~----------~~~~~~ 58 (185)
-.|+++||+|+||||.+-.|.....-...... ++.+.+..- +-+ .-..+.
T Consensus 204 ~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~d 283 (407)
T COG1419 204 RVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDCD 283 (407)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcCC
Confidence 46889999999999998887654331010111 111111000 000 112457
Q ss_pred EEEecCCChhhhcc----cccchhcc--CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEeCCCCCC
Q 029929 59 LQIWDTAGQERFQS----LGVAFYRG--ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGNKTDVDG 131 (185)
Q Consensus 59 ~~~~D~~g~~~~~~----~~~~~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~nK~Dl~~ 131 (185)
+.++||.|...... ....++.. ..-+.+|++++.. .+.+...+..+ ... |+ =+++||.|-..
T Consensus 284 ~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f----~~~-----~i~~~I~TKlDET~ 352 (407)
T COG1419 284 VILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQF----SLF-----PIDGLIFTKLDETT 352 (407)
T ss_pred EEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHh----ccC-----CcceeEEEcccccC
Confidence 88999999443322 22333332 3345677777742 23333333433 222 32 47799999654
Q ss_pred CCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 132 GNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
. .-.+-......+ .|+-+++
T Consensus 353 s------~G~~~s~~~e~~-~PV~YvT 372 (407)
T COG1419 353 S------LGNLFSLMYETR-LPVSYVT 372 (407)
T ss_pred c------hhHHHHHHHHhC-CCeEEEe
Confidence 3 333334444443 5666665
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.95 E-value=5.9e-05 Score=46.26 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=48.6
Q ss_pred EEEEc-CCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 11 VIILG-DSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 11 i~viG-~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
|.+.| ..|+||||+...+...-... ..+.. .+..+ ..+.+.++|+|+..... ....+..+|.++++.+
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~-~~~vl-------~~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~ 70 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARR-GKRVL-------LIDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQ 70 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhC-CCcEE-------EEeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEecc
Confidence 56666 55899999887765332111 11111 11111 11678899999954332 2266778999999998
Q ss_pred CCChhhHHHHHHHHH
Q 029929 90 VNVMKSFDNLNNWRE 104 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~ 104 (185)
.+. .+...+..+.+
T Consensus 71 ~~~-~s~~~~~~~~~ 84 (104)
T cd02042 71 PSP-LDLDGLEKLLE 84 (104)
T ss_pred CCH-HHHHHHHHHHH
Confidence 863 45555555544
No 422
>PRK13695 putative NTPase; Provisional
Probab=97.94 E-value=0.00096 Score=44.97 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+|+++|++|+|||||+..+.+.
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 37899999999999999986543
No 423
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.94 E-value=1.4e-05 Score=57.46 Aligned_cols=59 Identities=22% Similarity=0.339 Sum_probs=37.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC------CCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
...++++|+|.||+|||||+|++...... ....++.+..... .+.+.... .+.++||||
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp-~vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP-PVYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC-ceEEecCCC
Confidence 45689999999999999999998643322 2333333332221 23333322 466789999
No 424
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=7.8e-05 Score=55.90 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
-.++++|+.|+||||++..+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999988753
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.88 E-value=4.9e-05 Score=57.70 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
.-++++|++||||||++..|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999988864
No 426
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.88 E-value=1.5e-05 Score=59.12 Aligned_cols=56 Identities=29% Similarity=0.459 Sum_probs=39.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG 66 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g 66 (185)
..+++.|+|-||+||||+||+|....... .....|.+.....+..+. .+.++|.||
T Consensus 251 ~sIrvGViG~PNVGKSSvINsL~~~k~C~-vg~~pGvT~smqeV~Ldk---~i~llDsPg 306 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVINSLKRRKACN-VGNVPGVTRSMQEVKLDK---KIRLLDSPG 306 (435)
T ss_pred cceEeeeecCCCCChhHHHHHHHHhcccc-CCCCccchhhhhheeccC---CceeccCCc
Confidence 45899999999999999999999877642 123333333344444332 667889999
No 427
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.87 E-value=1.5e-05 Score=50.24 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 428
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.86 E-value=0.00025 Score=55.76 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~ 33 (185)
+++.||+||||||.++.|.....
T Consensus 48 LlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 48 LLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 45679999999999999886543
No 429
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.85 E-value=0.00033 Score=45.46 Aligned_cols=106 Identities=19% Similarity=0.165 Sum_probs=58.3
Q ss_pred EEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCC
Q 029929 13 ILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV 92 (185)
Q Consensus 13 viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (185)
.-|..|+||||+.-.+...-.... ..+.-.+... ......+.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 5 ~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D~---~~~~~~yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~~ 78 (139)
T cd02038 5 TSGKGGVGKTNISANLALALAKLG-KRVLLLDADL---GLANLDYDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPEP 78 (139)
T ss_pred EcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECCC---CCCCCCCCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCCh
Confidence 457889999998766543211000 0011001000 0001116788999988432 223457788999999998874
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 93 MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
.+...+...++.+.... ...++.+|+|+.+-.
T Consensus 79 -~s~~~~~~~l~~l~~~~-----~~~~~~lVvN~~~~~ 110 (139)
T cd02038 79 -TSITDAYALIKKLAKQL-----RVLNFRVVVNRAESP 110 (139)
T ss_pred -hHHHHHHHHHHHHHHhc-----CCCCEEEEEeCCCCH
Confidence 33444344444443321 134678999999743
No 430
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=97.85 E-value=3.1e-05 Score=53.72 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=17.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHH
Q 029929 8 LLKVIILGDSGVGKTSLMNQY 28 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l 28 (185)
++--+|+|||||||||..+.+
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~ 22 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGM 22 (290)
T ss_pred CcceEEEcCCCCCccchhhhH
Confidence 467789999999999988764
No 431
>PRK08118 topology modulation protein; Reviewed
Probab=97.85 E-value=1.7e-05 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-+|+|+|++|||||||...|....
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999998653
No 432
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.81 E-value=1.8e-05 Score=53.46 Aligned_cols=22 Identities=32% Similarity=0.782 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|+|+|++||||||+...|...
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999877
No 433
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.78 E-value=0.00087 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
.+|.|--|||||||++.+...
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 577899999999999999854
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.78 E-value=3.1e-05 Score=42.51 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=18.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
..+|.|+.|||||||+.++.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999997643
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=2.5e-05 Score=52.58 Aligned_cols=22 Identities=36% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|+|+|++|||||||.+.+...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998754
No 436
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.76 E-value=3.3e-05 Score=54.16 Aligned_cols=22 Identities=41% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|.++|++|||||||++.+.+-.
T Consensus 32 vsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7899999999999999988765
No 437
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.75 E-value=2.8e-05 Score=50.53 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|+++|++|||||||++.+....
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~ 23 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRL 23 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHHC
Confidence 6899999999999999998554
No 438
>PF05729 NACHT: NACHT domain
Probab=97.74 E-value=0.0001 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
++|.|++|+||||++..+...-
T Consensus 3 l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6789999999999999987543
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.72 E-value=0.0004 Score=50.05 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=69.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC---------CCccC--------c--ceeeeEEEEEEE------------CCcEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS---------NQYKA--------T--IGADFLTKEVQF------------EDRLF 57 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~---------~~~~~--------~--~~~~~~~~~~~~------------~~~~~ 57 (185)
-+++++|+.|+||||++..+...-.. ..... . ....+......- ....+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCCC
Confidence 58999999999999999877543110 00000 0 001111111000 01245
Q ss_pred EEEEecCCChhhhc----ccccchh--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 58 TLQIWDTAGQERFQ----SLGVAFY--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 58 ~~~~~D~~g~~~~~----~~~~~~~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.+.++||+|..... ......+ ...+-+++|+|++.. ...+..+...+. .. + +-=+++||.|-..
T Consensus 156 D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~----~~---~-~~~~I~TKlDet~ 225 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFK----DI---H-IDGIVFTKFDETA 225 (270)
T ss_pred CEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhC----CC---C-CCEEEEEeecCCC
Confidence 78899999944211 1122222 245678999998732 222233334332 11 1 3468899999765
Q ss_pred CCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 132 GNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
. .-.+.......+ .|+.+++
T Consensus 226 ~------~G~~l~~~~~~~-~Pi~~it 245 (270)
T PRK06731 226 S------SGELLKIPAVSS-APIVLMT 245 (270)
T ss_pred C------ccHHHHHHHHHC-cCEEEEe
Confidence 3 223344444444 6777766
No 440
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.72 E-value=0.00045 Score=44.55 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.+++.|++|+|||++++.+...-
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 441
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.69 E-value=0.00044 Score=41.44 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=43.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-ccchhccCcEEEEEEE
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-GVAFYRGADCCVLVYD 89 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-~~~~~~~~d~~i~v~d 89 (185)
+++.|..|+||||+...+...--... .. . ..++ .+.++|+++....... .......+|.++++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g-~~-------v--~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRG-KR-------V--LLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-Ce-------E--EEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 57889999999999988765431111 01 1 1111 6778899985433321 1345567999999998
Q ss_pred CCCh
Q 029929 90 VNVM 93 (185)
Q Consensus 90 ~~~~ 93 (185)
.+..
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 8753
No 442
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.68 E-value=5.1e-05 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|++.|++||||||+.+.+...-
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999988663
No 443
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.68 E-value=2.3e-05 Score=58.35 Aligned_cols=83 Identities=19% Similarity=0.143 Sum_probs=49.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhh--cccccchhccC
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF--QSLGVAFYRGA 81 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--~~~~~~~~~~~ 81 (185)
+...+.|.++|.||+||||+||+|-..+... .+.++.+ +.+.|--....+-++|+||.--. .+.....+
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET-----KVWQYItLmkrIfLIDcPGvVyps~dset~ivL--- 375 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET-----KVWQYITLMKRIFLIDCPGVVYPSSDSETDIVL--- 375 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc-----hHHHHHHHHhceeEecCCCccCCCCCchHHHHh---
Confidence 3456899999999999999999999887652 2233321 11222222345668899993211 22222222
Q ss_pred cEEEEEEECCChhh
Q 029929 82 DCCVLVYDVNVMKS 95 (185)
Q Consensus 82 d~~i~v~d~~~~~~ 95 (185)
-+++=|=.+.+|+.
T Consensus 376 kGvVRVenv~~pe~ 389 (572)
T KOG2423|consen 376 KGVVRVENVKNPED 389 (572)
T ss_pred hceeeeeecCCHHH
Confidence 34555666666553
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.67 E-value=5.5e-05 Score=51.98 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++||.|||||||++.+-.-.
T Consensus 30 vv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 30 VVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred EEEEECCCCCCHHHHHHHHHCCc
Confidence 57899999999999999887655
No 445
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.65 E-value=3.4e-05 Score=51.46 Aligned_cols=22 Identities=32% Similarity=0.676 Sum_probs=17.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999866
No 446
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.64 E-value=6.2e-05 Score=52.44 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 47899999999999999887765
No 447
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.59 E-value=6.7e-05 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=23.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..+++++|+|++|||||+|+..++...
T Consensus 11 ~~~fr~viIG~sGSGKT~li~~lL~~~ 37 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSGKTTLIKSLLYYL 37 (241)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 456899999999999999999987553
No 448
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.59 E-value=6.3e-05 Score=48.50 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|+.|||||||++.+.+..
T Consensus 13 ~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 13 IVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEEccCCCccccceeeecccc
Confidence 67899999999999999888765
No 449
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.58 E-value=0.00047 Score=44.17 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-|++.|+.|+|||||++.+...-
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998764
No 450
>PRK06217 hypothetical protein; Validated
Probab=97.57 E-value=7.3e-05 Score=50.87 Aligned_cols=23 Identities=35% Similarity=0.575 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+|+|+|.+||||||+.++|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999865
No 451
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.56 E-value=8.2e-05 Score=47.46 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|++.|++|+|||++++.+...-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 6899999999999999998764
No 452
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.56 E-value=6.9e-05 Score=48.37 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=22.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+...+|+|.|.||+|||||..++...
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence 45689999999999999999998754
No 453
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.54 E-value=5.6e-05 Score=50.71 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.=+++.||.|+||||++++|....
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 346888999999999999999876
No 454
>PRK03839 putative kinase; Provisional
Probab=97.53 E-value=8.2e-05 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|+++|++||||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998765
No 455
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.53 E-value=9.9e-05 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=19.7
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
++++||.|||||||++.+.+-.
T Consensus 32 ~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 6889999999999999998754
No 456
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.53 E-value=0.00012 Score=50.87 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..+.|+|.|++|||||||.+.+...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998765
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.53 E-value=9.9e-05 Score=47.30 Aligned_cols=26 Identities=27% Similarity=0.388 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS 34 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~ 34 (185)
-.++++|++|+||||++..+...-..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC
Confidence 47899999999999999999876544
No 458
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.53 E-value=0.00075 Score=47.07 Aligned_cols=48 Identities=23% Similarity=0.209 Sum_probs=31.0
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
...+.+|.+|+|+|.+- +++..+++..+.. ...+ -.++.+|+||.|-.
T Consensus 151 g~~~~vD~vivVvDpS~-~sl~taeri~~L~----~elg--~k~i~~V~NKv~e~ 198 (255)
T COG3640 151 GTIEGVDLVIVVVDPSY-KSLRTAERIKELA----EELG--IKRIFVVLNKVDEE 198 (255)
T ss_pred ccccCCCEEEEEeCCcH-HHHHHHHHHHHHH----HHhC--CceEEEEEeeccch
Confidence 34578999999999984 3444444433322 2221 15899999999843
No 459
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.52 E-value=0.00011 Score=47.79 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.|+|+|+.|||||||++.|.+.-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987653
No 460
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00085 Score=47.23 Aligned_cols=113 Identities=21% Similarity=0.396 Sum_probs=66.9
Q ss_pred eeEEEEEcCCCC--CHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEE----EEEEecCCChhhhcccccchhccC
Q 029929 8 LLKVIILGDSGV--GKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLF----TLQIWDTAGQERFQSLGVAFYRGA 81 (185)
Q Consensus 8 ~~~i~viG~~~~--GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~ 81 (185)
...++|+|..|+ ||.+|+.+|....+.....+.....+... +++++.| .+.+..... +.+.- ........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgw--tid~kyysadi~lcishicd-e~~lp-n~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGW--TIDNKYYSADINLCISHICD-EKFLP-NAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeece--EecceeeecceeEEeecccc-hhccC-Ccccccce
Confidence 357899999998 99999999998887755444443333322 2333322 222221111 11111 11122345
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCC
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDG 131 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~ 131 (185)
.+++++||.+....+..++.|+... ..... -++.++||.|.+.
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~ht-------dinsfdillcignkvdrvp 123 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHT-------DINSFDILLCIGNKVDRVP 123 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhcccc-------ccccchhheeccccccccc
Confidence 6889999999988888888887632 11122 2456779999654
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.51 E-value=0.0001 Score=46.87 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 462
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.51 E-value=0.00023 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=20.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHH
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~ 29 (185)
..+..|+++|..||||||.+-.|.
T Consensus 98 ~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 98 KPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCeEEEEEeccCCChHhHHHHHH
Confidence 346789999999999999887764
No 463
>PRK14530 adenylate kinase; Provisional
Probab=97.51 E-value=0.00011 Score=51.40 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+|+|+|++||||||+.+.|...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998644
No 464
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.49 E-value=0.00011 Score=50.13 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|++|||||||++.|....
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 68899999999999999997654
No 465
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.49 E-value=0.00011 Score=47.54 Aligned_cols=21 Identities=33% Similarity=0.793 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
|+++|++|||||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 688999999999999999865
No 466
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.49 E-value=0.00011 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.++++|++|||||||++.+.+.-
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 478999999999999999998754
No 467
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.49 E-value=0.00011 Score=45.15 Aligned_cols=20 Identities=50% Similarity=0.810 Sum_probs=18.2
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 029929 10 KVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~ 29 (185)
.++++|++|||||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 57899999999999999875
No 468
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.48 E-value=0.00042 Score=46.64 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=28.1
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|++++|+|+.++.+... ..+...+. ... .+.|+++|+||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~--l~~---~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL--QAG---GNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH--hcc---CCCCEEEEEehhhcCCH
Confidence 78999999987643321 12222211 111 15699999999999753
No 469
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.48 E-value=0.00011 Score=49.73 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|++|||||||++.+....
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999987753
No 470
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.48 E-value=8.8e-05 Score=50.95 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHHh
Q 029929 11 VIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~ 30 (185)
.+++||.|||||||++.|-.
T Consensus 36 TAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 36 TALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 47899999999999987743
No 471
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=97.47 E-value=0.00011 Score=54.57 Aligned_cols=128 Identities=18% Similarity=0.194 Sum_probs=79.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhC-------CCC-------------------CCccCcceeeeEEEEEEECCcEEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNR-------KFS-------------------NQYKATIGADFLTKEVQFEDRLFT 58 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~-------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~ 58 (185)
....++|.|+|...|||||..-..++. .+. .......+..............+.
T Consensus 4 ~~~~~ni~~i~h~~s~~stt~~~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~~ 83 (391)
T KOG0052|consen 4 EKIHINIVVIGHVDSGKSTTTGYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKYY 83 (391)
T ss_pred cccccceEEEEeeeeeeeEEEeeecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeEE
Confidence 345699999999999999965321100 000 000111122344444455667788
Q ss_pred EEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCC-CCcEEEEEeCCCCCCCC
Q 029929 59 LQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPE-NFPFVVLGNKTDVDGGN 133 (185)
Q Consensus 59 ~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~iiv~nK~Dl~~~~ 133 (185)
++++|.||+..+.........++|+.++++.+.. .-|+.-.....+...++...... -.++++.+||+|.....
T Consensus 84 i~iid~pgh~d~~k~mitg~sqaD~avliva~~~-gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~ 158 (391)
T KOG0052|consen 84 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT-GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 158 (391)
T ss_pred EEEecCCCCCceeeeEEeeEeeeceeEEEEeeec-cceeeeccccchhhhhhhhhccccceeeeEEeecccccCCC
Confidence 9999999999999888888999999999888832 22333333334444444443333 34677888999987643
No 472
>PRK13949 shikimate kinase; Provisional
Probab=97.47 E-value=0.00013 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|+|+|++||||||+.+.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988754
No 473
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.47 E-value=0.00011 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=21.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+++|+|+|++||||||+...|...
T Consensus 5 ~~mrIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 5 GPLKIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998654
No 474
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.47 E-value=0.00065 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|+|.|++||||||+++++...-
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999987654
No 475
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.47 E-value=0.00011 Score=52.34 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.8
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
++++||.|||||||++.+.+-
T Consensus 31 ~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 31 TGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 688999999999999999763
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.45 E-value=0.00016 Score=49.33 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
+.=|+|+|++|||||||+++|....
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3458899999999999999998764
No 477
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.45 E-value=0.00018 Score=49.85 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.+..-|+|+|++|||||||++.|....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 345668889999999999999997653
No 478
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.44 E-value=0.00017 Score=50.03 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..-|+++|++|||||||++.+.+.
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999864
No 479
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00015 Score=49.32 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+|+++|+|||||||+...+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999988654
No 480
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.42 E-value=0.00014 Score=50.10 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
|+|.|++|||||||++.+.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998765
No 481
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.42 E-value=0.00019 Score=48.29 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-+|+++|++||||||+.+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 37999999999999999998754
No 482
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.42 E-value=0.00016 Score=46.74 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.|+++|++|+|||+|++.+...-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999887543
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.42 E-value=0.00019 Score=48.14 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=21.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..-+.|+|++|||||||++++...-
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHH
Confidence 3468999999999999999998653
No 484
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.41 E-value=0.00014 Score=49.47 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-|+++|++||||||+++.+...
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999998743
No 485
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.41 E-value=0.00014 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-|+|+|++|||||||++.|....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccC
Confidence 47899999999999999998753
No 486
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.41 E-value=3.5e-05 Score=61.89 Aligned_cols=71 Identities=14% Similarity=0.056 Sum_probs=46.0
Q ss_pred EEEEEecCCC-------------hhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 57 FTLQIWDTAG-------------QERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 57 ~~~~~~D~~g-------------~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
..++++|+|| ......+...++...+.+|+.+...+.+-.. ..++... ..-++.+...+.|
T Consensus 132 ~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~at--s~alkia----revDp~g~RTigv 205 (657)
T KOG0446|consen 132 ANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIAT--SPALVVA----REVDPGGSRTLEV 205 (657)
T ss_pred chhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchhhhhhc--CHHHHHH----HhhCCCccchhHH
Confidence 3568899999 2334556777888999999988877632111 2222322 2334446678888
Q ss_pred EeCCCCCCCC
Q 029929 124 GNKTDVDGGN 133 (185)
Q Consensus 124 ~nK~Dl~~~~ 133 (185)
++|.|+.++.
T Consensus 206 itK~DlmdkG 215 (657)
T KOG0446|consen 206 ITKFDFMDKG 215 (657)
T ss_pred hhhHHhhhcC
Confidence 9999987654
No 487
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.40 E-value=0.016 Score=38.60 Aligned_cols=137 Identities=8% Similarity=0.071 Sum_probs=94.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEe---cCCChhhhcccccchhccCcE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIW---DTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---D~~g~~~~~~~~~~~~~~~d~ 83 (185)
+.-.|+++|..+.++..|..++....-. +. ++++.- -.|... .. .=...|.
T Consensus 14 n~atiLLVg~e~~~~~~LA~a~l~~~~~----------~~----------l~Vh~a~sLPLp~e~--~~----lRprIDl 67 (176)
T PF11111_consen 14 NTATILLVGTEEALLQQLAEAMLEEDKE----------FK----------LKVHLAKSLPLPSEN--NN----LRPRIDL 67 (176)
T ss_pred ceeEEEEecccHHHHHHHHHHHHhhccc----------ee----------EEEEEeccCCCcccc--cC----CCceeEE
Confidence 3468999999999999999999864311 00 111111 112111 11 1135899
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
++|++|....-++...+.-+..+...+.. + .+.++.+-....+. ..+..+++.+++..++ .|++.+.-...+
T Consensus 68 IVFvinl~sk~SL~~ve~SL~~vd~~ffl----G-KVCfl~t~a~~~~~--~sv~~~~V~kla~~y~-~plL~~~le~~~ 139 (176)
T PF11111_consen 68 IVFVINLHSKYSLQSVEASLSHVDPSFFL----G-KVCFLATNAGRESH--CSVHPNEVRKLAATYN-SPLLFADLENEE 139 (176)
T ss_pred EEEEEecCCcccHHHHHHHHhhCChhhhc----c-ceEEEEcCCCcccc--cccCHHHHHHHHHHhC-CCEEEeecccch
Confidence 99999999999998887766655333222 2 56777776665443 5677889999999888 999999999988
Q ss_pred CHHHHHHHHHHHHh
Q 029929 164 NVEAAFECIAKNAL 177 (185)
Q Consensus 164 ~i~~~~~~i~~~~~ 177 (185)
+...+-..|.+.+.
T Consensus 140 ~~~~lAqRLL~~lq 153 (176)
T PF11111_consen 140 GRTSLAQRLLRMLQ 153 (176)
T ss_pred HHHHHHHHHHHHHH
Confidence 88887777776654
No 488
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.39 E-value=0.00023 Score=47.81 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~ 33 (185)
.+.++|+.|+|||||+|.+.+-..
T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 27 IVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EEEEECCCCccHHHHHHHHHhccC
Confidence 688999999999999998876543
No 489
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.39 E-value=0.00017 Score=48.69 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=19.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
-.++++|+.|||||||++.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 3689999999999999998863
No 490
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.39 E-value=0.00076 Score=42.59 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-|++-|+-|||||||.+.+...-
T Consensus 17 vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 17 VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 47888999999999999987654
No 491
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=8.4e-05 Score=52.34 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=83.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhc----cC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYR----GA 81 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~----~~ 81 (185)
..+.|++.|.. ||||+|++++.+.-. ...++...+|....-...+ ..--..+|+++|-.....+..--++ ..
T Consensus 44 ~E~~I~~~Gn~--~~tt~I~~~FdR~e~-~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~ 120 (363)
T KOG3929|consen 44 FEFFIGSKGNG--GKTTIILRCFDRDEP-PKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRT 120 (363)
T ss_pred ceeEEEEecCC--ceeEeehhhcCcccC-CCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhh
Confidence 34677777754 459999999977643 3356666666554443333 2234579999995544433222111 12
Q ss_pred cEEEEEEECCChhhH-HHHHHHHHHHH--------------------------hh-------cCCCCCCCCcEEEEEeCC
Q 029929 82 DCCVLVYDVNVMKSF-DNLNNWREEFL--------------------------IQ-------ASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 82 d~~i~v~d~~~~~~~-~~~~~~~~~~~--------------------------~~-------~~~~~~~~~p~iiv~nK~ 127 (185)
=.+|++.|.++++.+ ..++..++.+. .. ....++..+|++||+.|.
T Consensus 121 ~slIL~LDls~p~~~W~t~E~~~~~~R~~vd~~~~~~~k~~~~L~E~mrqR~~~rvgqd~~d~e~~dP~P~PV~IVgsKY 200 (363)
T KOG3929|consen 121 FSLILVLDLSKPNDLWPTMENLLQATRSHVDKVIMKLGKTNAKLVEEMRQRIWNRVGQDHPDHELIDPFPVPVVIVGSKY 200 (363)
T ss_pred hhheeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcccCCCchhhcCCCCCceEEeccch
Confidence 256889999986533 22222222211 10 011233466999999999
Q ss_pred CCCCCC---ceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 128 DVDGGN---SRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 128 Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
|....- .+.-..+-++.++..++ ......|++.
T Consensus 201 DvFq~FesekRkH~C~~LRf~Ah~yG-aaLlmfSskM 236 (363)
T KOG3929|consen 201 DVFQDFESEKRKHICKTLRFVAHYYG-AALLMFSSKM 236 (363)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHhh-hHHHHHHHhh
Confidence 986431 23333445556666666 4555566553
No 492
>PRK07429 phosphoribulokinase; Provisional
Probab=97.38 E-value=0.00024 Score=52.71 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=25.8
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
|......++-|.|.|++|||||||++.+.+.
T Consensus 1 ~~~~~~~~~IIgI~G~SGSGKSTla~~L~~l 31 (327)
T PRK07429 1 MTSMPDRPVLLGVAGDSGCGKTTFLRGLADL 31 (327)
T ss_pred CCCCCCCCEEEEEECCCCCCHHHHHHHHHhH
Confidence 4445567799999999999999999988754
No 493
>PRK08233 hypothetical protein; Provisional
Probab=97.38 E-value=0.00021 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
+-|+|.|.+|||||||.++|...-
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 567889999999999999998653
No 494
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.37 E-value=0.001 Score=51.45 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=45.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
=++|.||+||||||.++++.+.-...... +-.-....++.+++-. ++++-+-.|.. |......++++---+|+|-.
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~~~~n--I~TiEDPVE~~~~gI~-Q~qVN~k~glt-fa~~LRa~LRqDPDvImVGE 335 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNTPERN--IITIEDPVEYQLPGIN-QVQVNPKIGLT-FARALRAILRQDPDVIMVGE 335 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCCce--EEEeeCCeeeecCCcc-eeecccccCCC-HHHHHHHHhccCCCeEEEec
Confidence 47889999999999999998765443322 1111223333333322 44444555522 23333444444334455555
Q ss_pred CCChhhHHH
Q 029929 90 VNVMKSFDN 98 (185)
Q Consensus 90 ~~~~~~~~~ 98 (185)
+-|.++.+.
T Consensus 336 IRD~ETAei 344 (500)
T COG2804 336 IRDLETAEI 344 (500)
T ss_pred cCCHHHHHH
Confidence 655555443
No 495
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.37 E-value=0.0002 Score=53.21 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~ 33 (185)
+.++||.||||||+++.+.+-..
T Consensus 34 ~~lLGPSGcGKTTlLR~IAGfe~ 56 (352)
T COG3842 34 VTLLGPSGCGKTTLLRMIAGFEQ 56 (352)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 67899999999999999987653
No 496
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.37 E-value=0.00024 Score=48.04 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 67899999999999999988765
No 497
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.37 E-value=0.00095 Score=49.02 Aligned_cols=23 Identities=30% Similarity=0.666 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-+|+|.|++|||||||++++...
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999865
No 498
>PRK14532 adenylate kinase; Provisional
Probab=97.37 E-value=0.00018 Score=49.13 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
+|+++|+|||||||+...+....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999987543
No 499
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.36 E-value=0.00017 Score=48.98 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||+|-+.+-.
T Consensus 33 ~vv~lGpSGcGKTTLLnl~AGf~ 55 (259)
T COG4525 33 LVVVLGPSGCGKTTLLNLIAGFV 55 (259)
T ss_pred EEEEEcCCCccHHHHHHHHhcCc
Confidence 47889999999999999887543
No 500
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.36 E-value=0.001 Score=49.22 Aligned_cols=24 Identities=38% Similarity=0.659 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.+|+|.|++|||||||+++|...-
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998653
Done!