Query 029929
Match_columns 185
No_of_seqs 154 out of 1872
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.6E-39 1.6E-43 222.6 18.3 166 7-179 12-177 (216)
2 1ky3_A GTP-binding protein YPT 100.0 6.1E-36 2.1E-40 202.1 19.4 180 1-181 1-181 (182)
3 2fu5_C RAS-related protein RAB 100.0 2.5E-36 8.6E-41 204.4 16.6 173 1-180 1-173 (183)
4 3tw8_B RAS-related protein RAB 100.0 9.5E-36 3.3E-40 201.0 19.0 172 1-180 2-173 (181)
5 3tkl_A RAS-related protein RAB 100.0 4.7E-35 1.6E-39 200.1 22.7 171 5-182 13-183 (196)
6 2bcg_Y Protein YP2, GTP-bindin 100.0 7.6E-35 2.6E-39 200.7 23.4 173 1-180 1-173 (206)
7 1wms_A RAB-9, RAB9, RAS-relate 100.0 9.4E-35 3.2E-39 195.6 22.8 173 5-180 4-176 (177)
8 1vg8_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 202.1 21.4 177 1-180 1-177 (207)
9 2bme_A RAB4A, RAS-related prot 100.0 2.1E-35 7.1E-40 200.3 19.5 173 1-180 3-175 (186)
10 3kkq_A RAS-related protein M-R 100.0 8.9E-35 3E-39 196.8 22.2 169 4-179 14-183 (183)
11 2efe_B Small GTP-binding prote 100.0 6.7E-35 2.3E-39 197.0 21.1 171 5-182 9-179 (181)
12 2ew1_A RAS-related protein RAB 100.0 4.1E-35 1.4E-39 201.4 19.9 169 6-181 24-192 (201)
13 2fn4_A P23, RAS-related protei 100.0 7.5E-35 2.6E-39 196.6 20.5 175 1-182 2-176 (181)
14 2a5j_A RAS-related protein RAB 100.0 7.5E-35 2.6E-39 198.6 20.0 168 6-180 19-186 (191)
15 2hup_A RAS-related protein RAB 100.0 7.5E-35 2.5E-39 200.1 19.7 170 6-181 27-196 (201)
16 1z0f_A RAB14, member RAS oncog 100.0 1.3E-34 4.5E-39 195.0 20.5 166 6-178 13-178 (179)
17 3t5g_A GTP-binding protein RHE 100.0 1.3E-34 4.3E-39 195.7 20.3 170 6-182 4-173 (181)
18 2fg5_A RAB-22B, RAS-related pr 100.0 5.6E-35 1.9E-39 199.4 18.6 170 5-181 20-189 (192)
19 2gf9_A RAS-related protein RAB 100.0 2E-34 6.8E-39 196.1 21.1 167 6-179 20-186 (189)
20 1x3s_A RAS-related protein RAB 100.0 1.8E-34 6.3E-39 197.0 21.0 171 3-180 10-180 (195)
21 3reg_A RHO-like small GTPase; 100.0 2.9E-34 9.8E-39 196.1 21.6 171 6-182 21-192 (194)
22 1z08_A RAS-related protein RAB 100.0 1E-34 3.6E-39 194.1 18.9 166 6-178 4-169 (170)
23 1g16_A RAS-related protein SEC 100.0 2.1E-34 7.4E-39 192.5 20.3 167 7-181 2-168 (170)
24 2g6b_A RAS-related protein RAB 100.0 4.8E-34 1.6E-38 192.6 22.0 169 6-181 8-177 (180)
25 1r2q_A RAS-related protein RAB 100.0 1.4E-34 4.7E-39 193.3 19.1 166 5-177 3-168 (170)
26 2il1_A RAB12; G-protein, GDP, 100.0 7.3E-35 2.5E-39 198.8 17.8 169 5-179 23-191 (192)
27 3ihw_A Centg3; RAS, centaurin, 100.0 4E-34 1.4E-38 193.9 21.1 167 5-181 17-183 (184)
28 3dz8_A RAS-related protein RAB 100.0 2.5E-35 8.4E-40 201.0 14.8 170 5-181 20-189 (191)
29 1z2a_A RAS-related protein RAB 100.0 2.3E-34 8E-39 192.0 19.2 165 6-178 3-167 (168)
30 1ek0_A Protein (GTP-binding pr 100.0 2.1E-34 7.2E-39 192.5 18.9 165 8-177 3-168 (170)
31 3q85_A GTP-binding protein REM 100.0 2.8E-34 9.7E-39 191.9 19.4 167 8-180 2-169 (169)
32 1z0j_A RAB-22, RAS-related pro 100.0 5.2E-34 1.8E-38 190.6 20.3 165 6-177 4-168 (170)
33 3bc1_A RAS-related protein RAB 100.0 2.9E-34 9.8E-39 195.8 19.4 170 5-180 8-187 (195)
34 1zbd_A Rabphilin-3A; G protein 100.0 8.4E-34 2.9E-38 195.0 21.6 167 6-179 6-172 (203)
35 3cbq_A GTP-binding protein REM 100.0 2.7E-34 9.2E-39 196.5 18.8 172 5-182 20-192 (195)
36 2o52_A RAS-related protein RAB 100.0 2.1E-34 7.1E-39 197.8 18.1 168 6-180 23-190 (200)
37 1z06_A RAS-related protein RAB 100.0 5E-34 1.7E-38 194.1 19.5 167 6-178 18-188 (189)
38 1c1y_A RAS-related protein RAP 100.0 5.8E-34 2E-38 189.9 19.2 164 8-177 3-166 (167)
39 2oil_A CATX-8, RAS-related pro 100.0 7.3E-34 2.5E-38 193.9 20.0 167 6-179 23-189 (193)
40 3cpj_B GTP-binding protein YPT 100.0 6.2E-34 2.1E-38 198.5 19.9 169 6-181 11-179 (223)
41 2y8e_A RAB-protein 6, GH09086P 100.0 4.3E-34 1.5E-38 192.5 18.3 165 7-178 13-177 (179)
42 3oes_A GTPase rhebl1; small GT 100.0 2.2E-34 7.6E-39 197.7 17.2 171 6-183 22-192 (201)
43 1gwn_A RHO-related GTP-binding 100.0 7.3E-34 2.5E-38 195.7 18.6 172 1-178 21-204 (205)
44 2hxs_A RAB-26, RAS-related pro 100.0 3.7E-34 1.3E-38 192.8 16.8 172 5-181 3-176 (178)
45 2iwr_A Centaurin gamma 1; ANK 100.0 7.9E-34 2.7E-38 191.3 18.3 167 6-180 5-171 (178)
46 2p5s_A RAS and EF-hand domain 100.0 5.9E-34 2E-38 195.3 17.7 168 6-178 26-197 (199)
47 1u8z_A RAS-related protein RAL 100.0 1.8E-33 6.3E-38 187.4 19.5 165 7-178 3-167 (168)
48 2nzj_A GTP-binding protein REM 100.0 1.7E-33 5.8E-38 189.0 19.4 168 7-181 3-172 (175)
49 3q3j_B RHO-related GTP-binding 100.0 1E-33 3.5E-38 196.2 18.5 171 6-182 25-207 (214)
50 2bov_A RAla, RAS-related prote 100.0 1.8E-33 6E-38 193.7 19.3 167 6-179 12-178 (206)
51 2a9k_A RAS-related protein RAL 100.0 1.6E-33 5.6E-38 190.9 18.8 168 6-180 16-183 (187)
52 3q72_A GTP-binding protein RAD 100.0 2.4E-33 8.3E-38 186.8 19.2 165 8-180 2-166 (166)
53 2atx_A Small GTP binding prote 100.0 7.6E-33 2.6E-37 189.0 21.8 167 6-178 16-193 (194)
54 3clv_A RAB5 protein, putative; 100.0 5.2E-33 1.8E-37 191.0 21.1 165 6-180 5-206 (208)
55 1kao_A RAP2A; GTP-binding prot 100.0 2E-33 6.7E-38 187.1 18.1 164 8-178 3-166 (167)
56 3cph_A RAS-related protein SEC 100.0 6.7E-33 2.3E-37 191.8 21.2 166 6-179 18-183 (213)
57 2f7s_A C25KG, RAS-related prot 100.0 4.9E-34 1.7E-38 198.1 15.4 168 6-179 23-200 (217)
58 4dsu_A GTPase KRAS, isoform 2B 100.0 1E-32 3.5E-37 187.3 21.6 165 7-179 3-167 (189)
59 3c5c_A RAS-like protein 12; GD 100.0 2.8E-33 9.4E-38 190.3 18.6 167 6-178 19-186 (187)
60 1m7b_A RND3/RHOE small GTP-bin 100.0 3.2E-33 1.1E-37 189.4 18.8 168 5-178 4-183 (184)
61 1mh1_A RAC1; GTP-binding, GTPa 100.0 5.6E-33 1.9E-37 188.2 19.3 170 7-182 4-184 (186)
62 2q3h_A RAS homolog gene family 100.0 4.3E-33 1.5E-37 191.2 18.7 170 6-181 18-198 (201)
63 2atv_A RERG, RAS-like estrogen 100.0 4.9E-33 1.7E-37 190.3 18.5 168 6-181 26-194 (196)
64 2g3y_A GTP-binding protein GEM 100.0 8.4E-33 2.9E-37 190.8 19.3 170 6-181 35-206 (211)
65 2fv8_A H6, RHO-related GTP-bin 100.0 1.3E-32 4.3E-37 189.8 20.1 171 6-182 23-204 (207)
66 2gco_A H9, RHO-related GTP-bin 100.0 1.6E-32 5.6E-37 188.4 20.6 167 6-178 23-200 (201)
67 3con_A GTPase NRAS; structural 100.0 4.9E-32 1.7E-36 184.4 22.1 168 6-181 19-186 (190)
68 2j0v_A RAC-like GTP-binding pr 100.0 6.4E-33 2.2E-37 191.9 17.8 170 6-181 7-183 (212)
69 2j1l_A RHO-related GTP-binding 100.0 8.8E-33 3E-37 191.5 17.9 170 6-181 32-212 (214)
70 2ce2_X GTPase HRAS; signaling 100.0 6.7E-32 2.3E-36 179.4 21.4 163 8-178 3-165 (166)
71 4djt_A GTP-binding nuclear pro 100.0 5.1E-33 1.7E-37 193.1 16.0 170 5-181 8-178 (218)
72 2yc2_C IFT27, small RAB-relate 100.0 2.4E-33 8.3E-38 193.2 14.1 170 7-180 19-194 (208)
73 2erx_A GTP-binding protein DI- 100.0 1.1E-32 3.9E-37 184.3 16.7 168 7-180 2-169 (172)
74 3l0i_B RAS-related protein RAB 100.0 3.3E-35 1.1E-39 201.5 3.9 168 5-179 30-197 (199)
75 2gf0_A GTP-binding protein DI- 100.0 3.8E-32 1.3E-36 186.1 17.7 169 5-180 5-173 (199)
76 4gzl_A RAS-related C3 botulinu 100.0 3.2E-32 1.1E-36 187.4 17.2 165 6-176 28-203 (204)
77 3gj0_A GTP-binding nuclear pro 100.0 7.3E-33 2.5E-37 192.8 13.7 167 5-181 12-178 (221)
78 3bwd_D RAC-like GTP-binding pr 100.0 8E-33 2.7E-37 186.9 12.8 167 6-178 6-181 (182)
79 3t1o_A Gliding protein MGLA; G 100.0 1.2E-32 4E-37 188.3 13.3 168 5-182 11-196 (198)
80 4bas_A ADP-ribosylation factor 100.0 4.9E-32 1.7E-36 185.5 15.9 174 5-182 14-193 (199)
81 2cjw_A GTP-binding protein GEM 100.0 4.8E-31 1.6E-35 179.9 19.4 168 6-179 4-173 (192)
82 1upt_A ARL1, ADP-ribosylation 100.0 1.3E-31 4.6E-36 179.1 16.3 163 6-180 5-171 (171)
83 1zd9_A ADP-ribosylation factor 100.0 2.3E-32 7.8E-37 185.8 12.6 163 6-179 20-186 (188)
84 1ksh_A ARF-like protein 2; sma 100.0 1.5E-31 5E-36 181.4 15.3 162 6-179 16-181 (186)
85 1zj6_A ADP-ribosylation factor 100.0 1.7E-31 5.9E-36 181.3 13.4 164 6-181 14-181 (187)
86 1r8s_A ADP-ribosylation factor 100.0 7.6E-32 2.6E-36 179.2 11.4 159 9-179 1-163 (164)
87 1f6b_A SAR1; gtpases, N-termin 100.0 4.5E-31 1.5E-35 180.9 14.9 158 6-175 23-196 (198)
88 1fzq_A ADP-ribosylation factor 100.0 1.3E-31 4.5E-36 181.1 12.0 163 6-180 14-180 (181)
89 1m2o_B GTP-binding protein SAR 100.0 1.5E-30 5.1E-35 177.2 16.9 158 6-175 21-189 (190)
90 2h57_A ADP-ribosylation factor 100.0 2.6E-30 8.8E-35 175.9 17.3 164 6-178 19-187 (190)
91 2b6h_A ADP-ribosylation factor 100.0 2.4E-31 8.4E-36 181.4 12.0 161 6-178 27-191 (192)
92 2h17_A ADP-ribosylation factor 100.0 2.3E-31 7.7E-36 179.9 11.4 158 6-175 19-180 (181)
93 2f9l_A RAB11B, member RAS onco 100.0 2.1E-29 7.3E-34 172.6 21.0 166 7-179 4-169 (199)
94 1moz_A ARL1, ADP-ribosylation 100.0 2.1E-31 7.2E-36 180.1 10.7 163 6-180 16-182 (183)
95 2x77_A ADP-ribosylation factor 100.0 4E-31 1.4E-35 179.8 11.6 163 6-180 20-186 (189)
96 2wkq_A NPH1-1, RAS-related C3 100.0 1.7E-29 5.9E-34 185.5 18.9 168 6-179 153-331 (332)
97 2zej_A Dardarin, leucine-rich 100.0 2E-30 6.7E-35 175.7 10.9 167 8-182 2-182 (184)
98 1oix_A RAS-related protein RAB 100.0 1.4E-28 4.6E-33 167.6 19.9 164 6-176 27-190 (191)
99 2lkc_A Translation initiation 100.0 2.6E-29 8.9E-34 169.0 15.5 165 4-183 4-176 (178)
100 3llu_A RAS-related GTP-binding 100.0 4.9E-30 1.7E-34 175.4 11.9 164 5-176 17-195 (196)
101 2fh5_B SR-beta, signal recogni 100.0 2.7E-29 9.1E-34 173.9 15.5 167 5-175 4-213 (214)
102 3th5_A RAS-related C3 botulinu 99.9 3.9E-32 1.3E-36 186.9 0.0 165 6-176 28-203 (204)
103 3o47_A ADP-ribosylation factor 100.0 1.1E-29 3.8E-34 186.1 10.3 161 7-179 164-328 (329)
104 1svi_A GTP-binding protein YSX 100.0 7.2E-29 2.5E-33 169.3 12.9 161 6-177 21-194 (195)
105 3r7w_A Gtpase1, GTP-binding pr 100.0 9.1E-29 3.1E-33 179.8 13.3 167 8-178 3-181 (307)
106 3pqc_A Probable GTP-binding pr 100.0 3.9E-28 1.3E-32 165.5 15.6 159 6-178 21-194 (195)
107 2qu8_A Putative nucleolar GTP- 100.0 7.5E-28 2.6E-32 168.2 16.3 166 6-180 27-207 (228)
108 2wji_A Ferrous iron transport 100.0 2.4E-28 8.2E-33 162.7 13.0 153 8-176 3-163 (165)
109 3lvq_E ARF-GAP with SH3 domain 100.0 1.5E-28 5.2E-33 189.4 13.7 164 6-181 320-487 (497)
110 3c5h_A Glucocorticoid receptor 100.0 2.8E-29 9.7E-34 178.1 7.5 165 6-177 17-254 (255)
111 2cxx_A Probable GTP-binding pr 100.0 4E-28 1.4E-32 164.8 10.5 159 9-181 2-187 (190)
112 3iev_A GTP-binding protein ERA 100.0 5.4E-27 1.9E-31 170.4 17.0 166 6-181 8-185 (308)
113 2dyk_A GTP-binding protein; GT 100.0 2E-27 6.7E-32 157.3 12.9 151 9-176 2-160 (161)
114 2gj8_A MNME, tRNA modification 100.0 1.6E-27 5.5E-32 159.7 12.1 156 8-180 4-168 (172)
115 2wjg_A FEOB, ferrous iron tran 99.9 2.3E-27 7.8E-32 160.9 12.4 159 6-180 5-171 (188)
116 4dhe_A Probable GTP-binding pr 99.9 1.2E-27 4.2E-32 166.5 10.7 166 6-181 27-214 (223)
117 3iby_A Ferrous iron transport 99.9 1.1E-27 3.8E-32 169.7 10.3 151 9-175 2-164 (256)
118 3a1s_A Iron(II) transport prot 99.9 6E-27 2.1E-31 166.2 14.0 156 6-177 3-166 (258)
119 3dpu_A RAB family protein; roc 99.9 2.1E-27 7.1E-32 184.4 9.5 165 6-181 39-211 (535)
120 3i8s_A Ferrous iron transport 99.9 9.9E-28 3.4E-32 171.7 7.0 156 8-179 3-170 (274)
121 3b1v_A Ferrous iron uptake tra 99.9 1.7E-27 5.9E-32 169.9 7.1 155 7-178 2-164 (272)
122 3r7w_B Gtpase2, GTP-binding pr 99.9 1.2E-27 4E-32 172.9 6.2 160 10-180 1-176 (331)
123 3k53_A Ferrous iron transport 99.9 2.9E-26 1E-30 164.0 12.5 158 8-180 3-168 (271)
124 1wf3_A GTP-binding protein; GT 99.9 1.8E-25 6.1E-30 161.7 14.2 166 1-180 1-175 (301)
125 1wb1_A Translation elongation 99.9 3E-25 1E-29 169.8 14.9 160 6-178 17-189 (482)
126 3sjy_A Translation initiation 99.9 8.2E-25 2.8E-29 164.4 15.8 169 5-180 5-194 (403)
127 2hjg_A GTP-binding protein ENG 99.9 1.4E-25 4.8E-30 170.2 11.7 162 7-180 174-351 (436)
128 3gee_A MNME, tRNA modification 99.9 4.4E-25 1.5E-29 168.2 13.7 157 7-177 232-397 (476)
129 1nrj_B SR-beta, signal recogni 99.9 1.9E-26 6.5E-31 159.9 5.6 149 5-163 9-169 (218)
130 1s0u_A EIF-2-gamma, translatio 99.9 2.2E-24 7.5E-29 162.4 16.8 165 5-179 5-199 (408)
131 1lnz_A SPO0B-associated GTP-bi 99.9 4E-25 1.4E-29 162.0 10.6 164 9-181 159-333 (342)
132 4dcu_A GTP-binding protein ENG 99.9 1.2E-24 4.1E-29 165.9 13.0 164 6-181 193-372 (456)
133 2e87_A Hypothetical protein PH 99.9 8.2E-24 2.8E-28 156.7 16.8 162 6-179 165-337 (357)
134 1kk1_A EIF2gamma; initiation o 99.9 3.7E-24 1.3E-28 161.2 14.7 165 5-179 7-201 (410)
135 3qq5_A Small GTP-binding prote 99.9 9.7E-26 3.3E-30 169.2 5.7 159 5-179 31-197 (423)
136 1xzp_A Probable tRNA modificat 99.9 5E-24 1.7E-28 162.5 12.5 152 8-177 243-404 (482)
137 3cb4_D GTP-binding protein LEP 99.9 1.6E-23 5.5E-28 163.1 15.4 162 7-180 3-184 (599)
138 3t5d_A Septin-7; GTP-binding p 99.9 1.3E-24 4.3E-29 155.7 8.1 165 5-178 5-204 (274)
139 1ega_A Protein (GTP-binding pr 99.9 2.5E-23 8.6E-28 150.6 14.9 161 7-180 7-177 (301)
140 2ywe_A GTP-binding protein LEP 99.9 3.4E-23 1.2E-27 161.1 16.6 163 6-180 4-186 (600)
141 3j2k_7 ERF3, eukaryotic polype 99.9 1.7E-23 5.7E-28 158.6 14.4 156 6-170 15-217 (439)
142 1mky_A Probable GTP-binding pr 99.9 4E-23 1.4E-27 156.9 15.4 154 9-180 2-168 (439)
143 2qtf_A Protein HFLX, GTP-bindi 99.9 8.3E-23 2.8E-27 151.1 16.6 165 10-182 181-358 (364)
144 3geh_A MNME, tRNA modification 99.9 7.4E-24 2.5E-28 160.9 11.0 155 7-180 223-386 (462)
145 3izy_P Translation initiation 99.9 8.5E-26 2.9E-30 173.6 0.2 162 7-178 3-168 (537)
146 3lxx_A GTPase IMAP family memb 99.9 1.4E-22 4.9E-27 142.4 14.9 167 6-179 27-215 (239)
147 2c78_A Elongation factor TU-A; 99.9 1.1E-23 3.7E-28 158.5 9.3 165 6-178 9-212 (405)
148 1d2e_A Elongation factor TU (E 99.9 2.1E-23 7.1E-28 156.5 10.8 164 7-178 2-195 (397)
149 2xtp_A GTPase IMAP family memb 99.9 1.1E-22 3.6E-27 144.7 13.9 166 6-180 20-210 (260)
150 3lxw_A GTPase IMAP family memb 99.9 2.4E-23 8.1E-28 146.9 10.3 170 6-181 19-211 (247)
151 1g7s_A Translation initiation 99.9 3.9E-23 1.3E-27 161.0 12.3 162 6-178 3-218 (594)
152 1mky_A Probable GTP-binding pr 99.9 1.2E-22 4.2E-27 154.2 14.6 162 7-180 179-357 (439)
153 2hjg_A GTP-binding protein ENG 99.9 2.4E-23 8.1E-28 158.0 10.2 154 9-179 4-166 (436)
154 2ged_A SR-beta, signal recogni 99.9 1.2E-23 4E-28 143.2 7.6 118 6-132 46-171 (193)
155 3tr5_A RF-3, peptide chain rel 99.9 3.3E-23 1.1E-27 159.7 10.8 117 6-132 11-149 (528)
156 1cip_A Protein (guanine nucleo 99.9 2.6E-23 9E-28 152.9 9.2 123 56-181 192-347 (353)
157 1jny_A EF-1-alpha, elongation 99.9 1.1E-24 3.9E-29 165.0 1.6 160 6-168 4-203 (435)
158 3p26_A Elongation factor 1 alp 99.9 3.4E-23 1.2E-27 158.9 9.1 158 6-167 31-227 (483)
159 2elf_A Protein translation elo 99.9 5.1E-23 1.7E-27 152.6 9.3 149 10-178 23-180 (370)
160 1zo1_I IF2, translation initia 99.9 2.7E-24 9.3E-29 164.0 1.5 157 6-175 2-164 (501)
161 3ohm_A Guanine nucleotide-bind 99.9 1.1E-22 3.8E-27 147.6 9.5 124 55-181 165-321 (327)
162 4dcu_A GTP-binding protein ENG 99.9 1.2E-22 4.1E-27 154.9 9.7 158 6-179 21-186 (456)
163 1zun_B Sulfate adenylate trans 99.9 1.5E-22 5E-27 153.5 9.7 155 6-168 22-214 (434)
164 1pui_A ENGB, probable GTP-bind 99.9 3.8E-22 1.3E-26 137.4 9.4 160 7-179 25-200 (210)
165 2qag_A Septin-2, protein NEDD5 99.9 7.2E-23 2.5E-27 151.6 5.9 164 6-180 35-235 (361)
166 2xtz_A Guanine nucleotide-bind 99.9 5.1E-22 1.8E-26 146.0 9.3 123 55-180 181-347 (354)
167 3avx_A Elongation factor TS, e 99.9 6.5E-22 2.2E-26 161.3 10.5 165 6-178 294-486 (1289)
168 3izq_1 HBS1P, elongation facto 99.9 6.8E-22 2.3E-26 154.9 9.2 157 6-168 165-362 (611)
169 3mca_A HBS1, elongation factor 99.9 4.8E-23 1.6E-27 160.9 2.5 159 6-177 175-396 (592)
170 1f60_A Elongation factor EEF1A 99.9 9.6E-22 3.3E-26 149.8 9.0 154 6-168 5-202 (458)
171 1r5b_A Eukaryotic peptide chai 99.9 1.5E-22 5.1E-27 154.5 4.6 158 6-169 41-243 (467)
172 1zcb_A G alpha I/13; GTP-bindi 99.9 1.7E-21 5.9E-26 143.7 9.5 122 56-180 200-355 (362)
173 2aka_B Dynamin-1; fusion prote 99.9 5E-22 1.7E-26 143.9 5.6 161 7-176 25-251 (299)
174 4fid_A G protein alpha subunit 99.8 1.6E-21 5.4E-26 142.1 6.8 122 54-178 158-328 (340)
175 1dar_A EF-G, elongation factor 99.8 2.9E-20 9.8E-25 147.7 13.7 119 4-132 8-144 (691)
176 1udx_A The GTP-binding protein 99.8 4.4E-20 1.5E-24 138.3 13.1 163 10-181 159-328 (416)
177 2h5e_A Peptide chain release f 99.8 2.8E-20 9.7E-25 143.6 11.2 119 6-132 11-149 (529)
178 2j69_A Bacterial dynamin-like 99.8 1.1E-19 3.8E-24 144.4 14.3 166 6-178 67-325 (695)
179 1azs_C GS-alpha; complex (lyas 99.8 1.1E-19 3.8E-24 135.1 12.9 121 56-179 216-386 (402)
180 3def_A T7I23.11 protein; chlor 99.8 3.1E-19 1.1E-23 126.9 13.8 123 6-132 34-166 (262)
181 2dy1_A Elongation factor G; tr 99.8 2.5E-19 8.5E-24 141.9 13.8 117 6-130 7-139 (665)
182 1jwy_B Dynamin A GTPase domain 99.8 3.2E-20 1.1E-24 135.4 7.8 164 7-180 23-264 (315)
183 2rdo_7 EF-G, elongation factor 99.8 1.3E-18 4.3E-23 138.5 16.8 119 6-132 8-149 (704)
184 2qnr_A Septin-2, protein NEDD5 99.8 3E-20 1E-24 134.4 6.0 165 6-180 16-216 (301)
185 2xex_A Elongation factor G; GT 99.8 5.3E-19 1.8E-23 140.5 12.0 117 6-132 8-142 (693)
186 3t34_A Dynamin-related protein 99.8 9.1E-20 3.1E-24 135.2 6.6 155 8-171 34-254 (360)
187 1wxq_A GTP-binding protein; st 99.8 4.3E-19 1.5E-23 132.6 10.0 85 9-93 1-114 (397)
188 1h65_A Chloroplast outer envel 99.8 1.5E-18 5.1E-23 124.0 11.7 121 7-132 38-169 (270)
189 3vqt_A RF-3, peptide chain rel 99.8 5.4E-18 1.9E-22 131.4 14.6 117 6-132 29-167 (548)
190 3p32_A Probable GTPase RV1496/ 99.8 2.4E-19 8.1E-24 132.7 5.2 108 56-178 171-284 (355)
191 2qag_C Septin-7; cell cycle, c 99.8 1.2E-18 4.1E-23 130.6 8.1 162 6-177 29-226 (418)
192 2x2e_A Dynamin-1; nitration, h 99.8 4.9E-20 1.7E-24 136.3 0.5 159 7-174 30-254 (353)
193 2wsm_A Hydrogenase expression/ 99.8 9.9E-19 3.4E-23 121.3 6.8 158 7-181 29-217 (221)
194 1jal_A YCHF protein; nucleotid 99.7 5.3E-17 1.8E-21 119.4 14.7 85 8-92 2-108 (363)
195 2www_A Methylmalonic aciduria 99.7 7.9E-19 2.7E-23 129.4 1.4 107 56-177 166-278 (349)
196 1u0l_A Probable GTPase ENGC; p 99.7 4.6E-18 1.6E-22 123.1 4.4 134 23-173 32-168 (301)
197 1n0u_A EF-2, elongation factor 99.7 4.5E-17 1.6E-21 131.9 9.6 117 6-130 17-163 (842)
198 2p67_A LAO/AO transport system 99.7 5.5E-18 1.9E-22 124.7 3.5 107 56-177 148-260 (341)
199 4fn5_A EF-G 1, elongation fact 99.7 7.8E-16 2.7E-20 122.9 15.4 119 6-132 11-152 (709)
200 3j25_A Tetracycline resistance 99.7 4.3E-18 1.5E-22 134.3 2.1 163 8-179 2-240 (638)
201 2hf9_A Probable hydrogenase ni 99.7 9.7E-17 3.3E-21 111.6 8.2 155 7-178 37-224 (226)
202 2dby_A GTP-binding protein; GD 99.7 1.9E-16 6.6E-21 117.0 10.1 84 9-92 2-111 (368)
203 3zvr_A Dynamin-1; hydrolase, D 99.7 3.8E-17 1.3E-21 129.7 6.1 159 7-175 50-275 (772)
204 2qpt_A EH domain-containing pr 99.7 5.9E-17 2E-21 125.7 7.0 120 6-132 63-233 (550)
205 1yrb_A ATP(GTP)binding protein 99.7 6.5E-16 2.2E-20 109.7 9.9 119 57-179 109-258 (262)
206 4a9a_A Ribosome-interacting GT 99.6 6.6E-15 2.3E-19 108.8 14.8 119 6-130 70-195 (376)
207 2qm8_A GTPase/ATPase; G protei 99.6 4.4E-14 1.5E-18 103.7 11.5 105 56-177 147-260 (337)
208 3l82_B F-box only protein 4; T 99.6 2.3E-15 8E-20 101.4 4.0 112 64-180 109-225 (227)
209 2ohf_A Protein OLA1, GTP-bindi 99.5 4.5E-14 1.5E-18 104.8 6.2 87 7-93 21-129 (396)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.5 1.8E-12 6.1E-17 96.5 14.1 86 7-92 19-127 (392)
211 2yv5_A YJEQ protein; hydrolase 99.5 3.2E-13 1.1E-17 97.7 8.9 97 67-173 66-164 (302)
212 3l2o_B F-box only protein 4; s 99.4 3E-14 1E-18 100.6 1.1 112 64-180 194-310 (312)
213 3sop_A Neuronal-specific septi 99.3 1.5E-11 5.2E-16 87.5 7.4 138 8-156 2-178 (270)
214 2qag_B Septin-6, protein NEDD5 99.2 2.3E-11 7.8E-16 91.2 7.9 144 7-160 41-218 (427)
215 3ec1_A YQEH GTPase; atnos1, at 99.2 2E-12 6.9E-17 96.0 1.6 140 9-165 163-318 (369)
216 2j37_W Signal recognition part 99.2 1.2E-10 4.2E-15 89.3 9.3 152 7-175 100-310 (504)
217 1tq4_A IIGP1, interferon-induc 99.2 3E-10 1E-14 85.1 10.6 162 8-180 69-255 (413)
218 3h2y_A GTPase family protein; 99.1 5.9E-12 2E-16 93.4 0.3 135 9-160 161-312 (368)
219 3h2y_A GTPase family protein; 99.1 4.1E-10 1.4E-14 83.5 7.7 101 66-176 55-158 (368)
220 3ec1_A YQEH GTPase; atnos1, at 99.0 6.2E-10 2.1E-14 82.6 6.1 101 66-176 57-160 (369)
221 1puj_A YLQF, conserved hypothe 99.0 9.3E-10 3.2E-14 78.7 6.0 99 62-177 4-105 (282)
222 3dm5_A SRP54, signal recogniti 98.8 1.8E-08 6.1E-13 76.0 7.9 90 57-165 183-278 (443)
223 1puj_A YLQF, conserved hypothe 98.7 6.9E-09 2.3E-13 74.3 3.7 57 6-67 118-175 (282)
224 3cnl_A YLQF, putative uncharac 98.7 1.1E-08 3.8E-13 72.4 3.2 56 9-69 100-156 (262)
225 1f5n_A Interferon-induced guan 98.6 4.8E-08 1.6E-12 76.3 4.7 63 6-68 36-102 (592)
226 2v3c_C SRP54, signal recogniti 98.6 3.9E-07 1.3E-11 68.9 9.2 23 8-30 99-121 (432)
227 3kl4_A SRP54, signal recogniti 98.5 4.8E-08 1.7E-12 73.6 3.7 91 56-165 179-277 (433)
228 3szr_A Interferon-induced GTP- 98.5 4.9E-07 1.7E-11 71.3 7.9 24 9-32 46-69 (608)
229 3cnl_A YLQF, putative uncharac 98.4 8.1E-08 2.8E-12 68.0 2.8 93 64-174 4-97 (262)
230 1j8m_F SRP54, signal recogniti 98.4 7.9E-07 2.7E-11 64.0 7.5 92 56-167 180-280 (297)
231 1t9h_A YLOQ, probable GTPase E 98.4 1.7E-07 5.8E-12 67.7 2.9 91 73-171 79-170 (307)
232 3q5d_A Atlastin-1; G protein, 98.2 8.2E-06 2.8E-10 61.8 9.8 26 6-31 65-90 (447)
233 3e70_C DPA, signal recognition 98.2 3.5E-06 1.2E-10 61.5 6.5 91 58-167 213-309 (328)
234 2rcn_A Probable GTPase ENGC; Y 98.1 1.2E-05 4.2E-10 59.2 8.2 86 77-172 127-213 (358)
235 1bif_A 6-phosphofructo-2-kinas 98.0 5.5E-07 1.9E-11 69.0 -0.8 101 6-108 37-147 (469)
236 1ye8_A Protein THEP1, hypothet 97.8 1.2E-05 4.1E-10 53.5 3.5 23 10-32 2-24 (178)
237 2xxa_A Signal recognition part 97.8 0.00012 4E-09 55.5 9.3 23 7-29 99-121 (433)
238 1knq_A Gluconate kinase; ALFA/ 97.8 1.9E-05 6.4E-10 52.2 4.0 31 1-31 1-31 (175)
239 1kgd_A CASK, peripheral plasma 97.7 1.8E-05 6.2E-10 52.6 3.3 23 10-32 7-29 (180)
240 1lvg_A Guanylate kinase, GMP k 97.7 2.1E-05 7.3E-10 53.1 3.3 22 10-31 6-27 (198)
241 3tr0_A Guanylate kinase, GMP k 97.7 2.8E-05 9.6E-10 52.6 3.3 22 10-31 9-30 (205)
242 1zp6_A Hypothetical protein AT 97.7 3E-05 1E-09 51.9 3.3 23 9-31 10-32 (191)
243 3a00_A Guanylate kinase, GMP k 97.7 2.9E-05 9.9E-10 51.9 3.2 22 11-32 4-25 (186)
244 2yv5_A YJEQ protein; hydrolase 97.6 0.00017 5.7E-09 52.1 7.1 22 10-32 167-188 (302)
245 1znw_A Guanylate kinase, GMP k 97.6 3.4E-05 1.2E-09 52.5 3.2 23 10-32 22-44 (207)
246 1z6g_A Guanylate kinase; struc 97.6 4.1E-05 1.4E-09 52.6 3.2 23 10-32 25-47 (218)
247 1s96_A Guanylate kinase, GMP k 97.6 4.3E-05 1.5E-09 52.5 3.3 23 10-32 18-40 (219)
248 1ly1_A Polynucleotide kinase; 97.6 5.8E-05 2E-09 49.9 3.8 22 9-30 3-24 (181)
249 1uf9_A TT1252 protein; P-loop, 97.6 5.9E-05 2E-09 50.9 3.8 31 1-31 1-31 (203)
250 3c8u_A Fructokinase; YP_612366 97.6 4.1E-05 1.4E-09 52.1 3.0 25 7-31 21-45 (208)
251 3ney_A 55 kDa erythrocyte memb 97.6 5.1E-05 1.7E-09 51.2 3.3 23 10-32 21-43 (197)
252 3tau_A Guanylate kinase, GMP k 97.6 5.2E-05 1.8E-09 51.6 3.4 24 9-32 9-32 (208)
253 4gp7_A Metallophosphoesterase; 97.5 4.8E-05 1.7E-09 50.1 3.1 20 10-29 11-30 (171)
254 1htw_A HI0065; nucleotide-bind 97.5 5.7E-05 2E-09 49.2 3.2 23 10-32 35-57 (158)
255 1kag_A SKI, shikimate kinase I 97.5 5.8E-05 2E-09 49.6 3.3 23 9-31 5-27 (173)
256 2bbw_A Adenylate kinase 4, AK4 97.5 6.6E-05 2.2E-09 52.4 3.6 22 8-29 27-48 (246)
257 3tif_A Uncharacterized ABC tra 97.5 5.1E-05 1.8E-09 52.7 2.9 23 10-32 33-55 (235)
258 2wwf_A Thymidilate kinase, put 97.5 8.4E-05 2.9E-09 50.5 3.9 25 7-31 9-33 (212)
259 2bdt_A BH3686; alpha-beta prot 97.5 6.7E-05 2.3E-09 50.1 3.2 21 10-30 4-24 (189)
260 2j41_A Guanylate kinase; GMP, 97.5 7.2E-05 2.4E-09 50.6 3.4 24 9-32 7-30 (207)
261 3asz_A Uridine kinase; cytidin 97.5 8.4E-05 2.9E-09 50.5 3.6 24 8-31 6-29 (211)
262 4eun_A Thermoresistant glucoki 97.5 7.4E-05 2.5E-09 50.5 3.3 23 9-31 30-52 (200)
263 2onk_A Molybdate/tungstate ABC 97.5 7.5E-05 2.6E-09 52.0 3.3 23 10-32 26-48 (240)
264 2qor_A Guanylate kinase; phosp 97.5 7.6E-05 2.6E-09 50.6 3.3 24 9-32 13-36 (204)
265 1ex7_A Guanylate kinase; subst 97.5 8E-05 2.8E-09 49.8 3.3 22 11-32 4-25 (186)
266 2pcj_A ABC transporter, lipopr 97.5 6.2E-05 2.1E-09 51.9 2.8 23 10-32 32-54 (224)
267 3kb2_A SPBC2 prophage-derived 97.5 8.1E-05 2.8E-09 48.8 3.2 22 10-31 3-24 (173)
268 2eyu_A Twitching motility prot 97.4 8.2E-05 2.8E-09 52.5 3.2 22 10-31 27-48 (261)
269 3lw7_A Adenylate kinase relate 97.4 8.2E-05 2.8E-09 48.8 3.1 19 10-28 3-21 (179)
270 1sgw_A Putative ABC transporte 97.4 8E-05 2.7E-09 51.0 3.0 23 10-32 37-59 (214)
271 3t61_A Gluconokinase; PSI-biol 97.4 9.2E-05 3.1E-09 50.0 3.3 24 8-31 18-41 (202)
272 1jjv_A Dephospho-COA kinase; P 97.4 0.00011 3.8E-09 49.7 3.7 22 9-30 3-24 (206)
273 2i3b_A HCR-ntpase, human cance 97.4 9.2E-05 3.1E-09 49.7 3.1 22 10-31 3-24 (189)
274 1b0u_A Histidine permease; ABC 97.4 8.1E-05 2.8E-09 52.6 3.0 23 10-32 34-56 (262)
275 3gfo_A Cobalt import ATP-bindi 97.4 8.1E-05 2.8E-09 52.9 3.0 23 10-32 36-58 (275)
276 2cdn_A Adenylate kinase; phosp 97.4 0.00013 4.5E-09 49.2 3.9 26 6-31 18-43 (201)
277 3ec2_A DNA replication protein 97.4 8.6E-05 2.9E-09 49.2 2.8 24 9-32 39-62 (180)
278 2cbz_A Multidrug resistance-as 97.4 8.6E-05 2.9E-09 51.7 2.9 23 10-32 33-55 (237)
279 2rcn_A Probable GTPase ENGC; Y 97.4 0.0001 3.4E-09 54.3 3.3 24 10-33 217-240 (358)
280 1cke_A CK, MSSA, protein (cyti 97.4 0.00013 4.3E-09 50.2 3.7 22 9-30 6-27 (227)
281 1g6h_A High-affinity branched- 97.4 8.9E-05 3E-09 52.2 2.9 23 10-32 35-57 (257)
282 3vaa_A Shikimate kinase, SK; s 97.4 0.00012 4.2E-09 49.4 3.5 23 9-31 26-48 (199)
283 3b85_A Phosphate starvation-in 97.4 7.7E-05 2.6E-09 50.8 2.5 22 10-31 24-45 (208)
284 4g1u_C Hemin import ATP-bindin 97.4 9.1E-05 3.1E-09 52.4 2.9 23 10-32 39-61 (266)
285 2olj_A Amino acid ABC transpor 97.4 9.8E-05 3.3E-09 52.2 3.0 23 10-32 52-74 (263)
286 2ff7_A Alpha-hemolysin translo 97.4 9.7E-05 3.3E-09 51.7 2.9 23 10-32 37-59 (247)
287 2pze_A Cystic fibrosis transme 97.4 0.0001 3.5E-09 51.0 3.0 23 10-32 36-58 (229)
288 3fb4_A Adenylate kinase; psych 97.4 0.00013 4.4E-09 49.8 3.5 21 10-30 2-22 (216)
289 3uie_A Adenylyl-sulfate kinase 97.4 0.00012 4E-09 49.5 3.2 24 8-31 25-48 (200)
290 2v9p_A Replication protein E1; 97.4 0.00012 4.1E-09 52.8 3.4 22 10-31 128-149 (305)
291 1qhx_A CPT, protein (chloramph 97.4 0.00013 4.3E-09 48.2 3.3 23 9-31 4-26 (178)
292 2if2_A Dephospho-COA kinase; a 97.4 0.00013 4.4E-09 49.3 3.4 22 9-30 2-23 (204)
293 1vpl_A ABC transporter, ATP-bi 97.4 0.0001 3.5E-09 51.9 3.0 23 10-32 43-65 (256)
294 1mv5_A LMRA, multidrug resista 97.4 0.00011 3.9E-09 51.2 3.2 23 10-32 30-52 (243)
295 2d2e_A SUFC protein; ABC-ATPas 97.4 0.00012 4E-09 51.4 3.2 22 10-31 31-52 (250)
296 1ji0_A ABC transporter; ATP bi 97.4 0.0001 3.5E-09 51.4 2.9 23 10-32 34-56 (240)
297 2zu0_C Probable ATP-dependent 97.4 0.00012 4.1E-09 51.9 3.3 22 10-31 48-69 (267)
298 3dl0_A Adenylate kinase; phosp 97.4 0.00014 4.7E-09 49.7 3.5 21 10-30 2-22 (216)
299 2rhm_A Putative kinase; P-loop 97.4 0.00016 5.4E-09 48.3 3.7 24 8-31 5-28 (193)
300 3tlx_A Adenylate kinase 2; str 97.3 0.00017 5.7E-09 50.4 3.9 24 7-30 28-51 (243)
301 2qi9_C Vitamin B12 import ATP- 97.3 0.00011 3.8E-09 51.5 3.0 23 10-32 28-50 (249)
302 3cm0_A Adenylate kinase; ATP-b 97.3 0.00018 6.1E-09 47.8 3.8 22 9-30 5-26 (186)
303 1y63_A LMAJ004144AAA protein; 97.3 0.00019 6.3E-09 47.8 3.8 24 8-31 10-33 (184)
304 1np6_A Molybdopterin-guanine d 97.3 0.00018 6.1E-09 47.6 3.6 24 8-31 6-29 (174)
305 2ihy_A ABC transporter, ATP-bi 97.3 0.00012 4.2E-09 52.2 3.0 23 10-32 49-71 (279)
306 2ghi_A Transport protein; mult 97.3 0.00012 4.1E-09 51.6 2.9 23 10-32 48-70 (260)
307 2ixe_A Antigen peptide transpo 97.3 0.00012 4.2E-09 51.9 2.9 23 10-32 47-69 (271)
308 2ehv_A Hypothetical protein PH 97.3 0.00014 4.9E-09 50.6 3.2 20 10-29 32-51 (251)
309 1aky_A Adenylate kinase; ATP:A 97.3 0.00018 6.1E-09 49.3 3.6 23 8-30 4-26 (220)
310 1tev_A UMP-CMP kinase; ploop, 97.3 0.00019 6.5E-09 47.9 3.7 23 8-30 3-25 (196)
311 3aez_A Pantothenate kinase; tr 97.3 0.00015 5E-09 52.6 3.3 25 7-31 89-113 (312)
312 2nq2_C Hypothetical ABC transp 97.3 0.00013 4.5E-09 51.2 2.9 23 10-32 33-55 (253)
313 2jaq_A Deoxyguanosine kinase; 97.3 0.00018 6E-09 48.5 3.5 22 10-31 2-23 (205)
314 3trf_A Shikimate kinase, SK; a 97.3 0.00018 6.2E-09 47.8 3.5 23 9-31 6-28 (185)
315 1u0l_A Probable GTPase ENGC; p 97.3 0.00016 5.6E-09 52.1 3.5 24 10-33 171-194 (301)
316 1nks_A Adenylate kinase; therm 97.3 0.00017 5.9E-09 48.1 3.4 22 10-31 3-24 (194)
317 3be4_A Adenylate kinase; malar 97.3 0.00019 6.5E-09 49.1 3.6 24 7-30 4-27 (217)
318 4a74_A DNA repair and recombin 97.3 0.00015 5.1E-09 49.8 3.1 23 10-32 27-49 (231)
319 3lnc_A Guanylate kinase, GMP k 97.3 8.5E-05 2.9E-09 51.3 1.9 22 10-31 29-51 (231)
320 3jvv_A Twitching mobility prot 97.3 0.00015 5.1E-09 53.5 3.2 22 10-31 125-146 (356)
321 2yz2_A Putative ABC transporte 97.3 0.00014 4.7E-09 51.5 2.9 23 10-32 35-57 (266)
322 3sr0_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 48.9 3.5 22 10-31 2-23 (206)
323 1zak_A Adenylate kinase; ATP:A 97.3 0.00015 5.3E-09 49.7 3.1 25 7-31 4-28 (222)
324 1qf9_A UMP/CMP kinase, protein 97.3 0.00022 7.6E-09 47.5 3.8 24 7-30 5-28 (194)
325 3tqc_A Pantothenate kinase; bi 97.3 0.00022 7.6E-09 51.8 3.9 25 6-30 90-114 (321)
326 1zd8_A GTP:AMP phosphotransfer 97.3 0.00019 6.6E-09 49.4 3.4 23 8-30 7-29 (227)
327 1kht_A Adenylate kinase; phosp 97.3 0.00019 6.4E-09 47.8 3.3 22 9-30 4-25 (192)
328 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00017 5.7E-09 53.2 3.1 23 10-32 32-54 (359)
329 2x8a_A Nuclear valosin-contain 97.2 0.00018 6.3E-09 51.1 3.2 22 10-31 46-67 (274)
330 1via_A Shikimate kinase; struc 97.2 0.00019 6.7E-09 47.2 3.1 22 10-31 6-27 (175)
331 2pjz_A Hypothetical protein ST 97.2 0.00019 6.4E-09 50.7 3.2 23 10-32 32-54 (263)
332 2kjq_A DNAA-related protein; s 97.2 0.00012 4.2E-09 47.1 2.1 23 10-32 38-60 (149)
333 1e4v_A Adenylate kinase; trans 97.2 0.00021 7.1E-09 48.8 3.3 21 10-30 2-22 (214)
334 2qt1_A Nicotinamide riboside k 97.2 0.00033 1.1E-08 47.4 4.3 25 7-31 20-44 (207)
335 2c95_A Adenylate kinase 1; tra 97.2 0.00012 4E-09 49.1 2.0 23 8-30 9-31 (196)
336 2jeo_A Uridine-cytidine kinase 97.2 0.00026 8.9E-09 49.4 3.8 23 9-31 26-48 (245)
337 2plr_A DTMP kinase, probable t 97.2 0.00028 9.5E-09 47.8 3.8 23 9-31 5-27 (213)
338 2v54_A DTMP kinase, thymidylat 97.2 0.00029 9.8E-09 47.5 3.8 24 9-32 5-28 (204)
339 1gvn_B Zeta; postsegregational 97.2 0.00025 8.7E-09 50.7 3.7 25 7-31 32-56 (287)
340 1odf_A YGR205W, hypothetical 3 97.2 0.00031 1.1E-08 50.3 4.1 25 6-30 29-53 (290)
341 1z47_A CYSA, putative ABC-tran 97.2 0.00021 7.2E-09 52.6 3.2 23 10-32 43-65 (355)
342 1ak2_A Adenylate kinase isoenz 97.2 0.00027 9.4E-09 48.9 3.7 25 7-31 15-39 (233)
343 1ukz_A Uridylate kinase; trans 97.2 0.00033 1.1E-08 47.3 3.9 25 7-31 14-38 (203)
344 1ixz_A ATP-dependent metallopr 97.2 0.00023 8E-09 49.8 3.3 23 10-32 51-73 (254)
345 2f1r_A Molybdopterin-guanine d 97.2 0.00011 3.6E-09 48.5 1.4 23 10-32 4-26 (171)
346 1lw7_A Transcriptional regulat 97.2 0.00019 6.5E-09 53.1 2.9 24 9-32 171-194 (365)
347 2yyz_A Sugar ABC transporter, 97.2 0.00022 7.7E-09 52.6 3.2 23 10-32 31-53 (359)
348 3rlf_A Maltose/maltodextrin im 97.2 0.00023 7.9E-09 52.9 3.3 23 10-32 31-53 (381)
349 2it1_A 362AA long hypothetical 97.2 0.00023 7.9E-09 52.6 3.3 23 10-32 31-53 (362)
350 1xjc_A MOBB protein homolog; s 97.2 0.00031 1.1E-08 46.1 3.5 23 9-31 5-27 (169)
351 3tui_C Methionine import ATP-b 97.2 0.00024 8.3E-09 52.4 3.3 23 10-32 56-78 (366)
352 1t9h_A YLOQ, probable GTPase E 97.2 6.1E-05 2.1E-09 54.4 0.1 23 10-32 175-197 (307)
353 2iyv_A Shikimate kinase, SK; t 97.2 0.00025 8.4E-09 47.1 3.0 22 10-31 4-25 (184)
354 2yvu_A Probable adenylyl-sulfa 97.2 0.00041 1.4E-08 46.1 4.1 25 7-31 12-36 (186)
355 2bbs_A Cystic fibrosis transme 97.2 0.00021 7.2E-09 51.2 2.8 23 10-32 66-88 (290)
356 2bwj_A Adenylate kinase 5; pho 97.2 0.00027 9.3E-09 47.4 3.2 24 8-31 12-35 (199)
357 1g29_1 MALK, maltose transport 97.2 0.00025 8.7E-09 52.6 3.2 23 10-32 31-53 (372)
358 1v43_A Sugar-binding transport 97.2 0.00026 8.9E-09 52.5 3.3 23 10-32 39-61 (372)
359 3iij_A Coilin-interacting nucl 97.2 0.00033 1.1E-08 46.3 3.5 23 9-31 12-34 (180)
360 4ido_A Atlastin-1; GTPase, GTP 97.1 0.012 4.3E-07 44.6 12.3 24 6-29 65-88 (457)
361 2pt5_A Shikimate kinase, SK; a 97.1 0.00034 1.2E-08 45.6 3.5 22 10-31 2-23 (168)
362 1p9r_A General secretion pathw 97.1 0.00026 8.8E-09 53.4 3.2 23 10-32 169-191 (418)
363 3nh6_A ATP-binding cassette SU 97.1 0.00015 5.3E-09 52.3 1.9 23 10-32 82-104 (306)
364 2ewv_A Twitching motility prot 97.1 0.00029 9.8E-09 52.4 3.4 22 10-31 138-159 (372)
365 1rz3_A Hypothetical protein rb 97.1 0.00037 1.3E-08 47.1 3.7 23 8-30 22-44 (201)
366 2gza_A Type IV secretion syste 97.1 0.00025 8.5E-09 52.5 3.0 23 10-32 177-199 (361)
367 2p5t_B PEZT; postsegregational 97.1 0.00024 8.3E-09 49.8 2.8 26 6-31 30-55 (253)
368 1rj9_A FTSY, signal recognitio 97.1 0.00029 9.9E-09 50.9 3.2 23 8-30 102-124 (304)
369 2ze6_A Isopentenyl transferase 97.1 0.00031 1.1E-08 49.3 3.3 22 10-31 3-24 (253)
370 2xb4_A Adenylate kinase; ATP-b 97.1 0.00035 1.2E-08 48.0 3.5 21 10-30 2-22 (223)
371 1e6c_A Shikimate kinase; phosp 97.1 0.00033 1.1E-08 45.9 3.3 23 9-31 3-25 (173)
372 1vht_A Dephospho-COA kinase; s 97.1 0.00042 1.4E-08 47.3 3.8 23 8-30 4-26 (218)
373 1nn5_A Similar to deoxythymidy 97.1 0.00036 1.2E-08 47.4 3.5 24 8-31 9-32 (215)
374 4e22_A Cytidylate kinase; P-lo 97.1 0.0004 1.4E-08 48.7 3.7 21 9-29 28-48 (252)
375 3a4m_A L-seryl-tRNA(SEC) kinas 97.1 0.0004 1.4E-08 48.9 3.8 23 9-31 5-27 (260)
376 2pt7_A CAG-ALFA; ATPase, prote 97.1 0.00024 8E-09 51.9 2.6 23 10-32 173-195 (330)
377 1jbk_A CLPB protein; beta barr 97.1 0.00039 1.3E-08 46.0 3.5 23 9-31 44-66 (195)
378 1uj2_A Uridine-cytidine kinase 97.1 0.00041 1.4E-08 48.6 3.7 24 7-30 21-44 (252)
379 1sq5_A Pantothenate kinase; P- 97.1 0.00043 1.5E-08 50.0 3.9 24 8-31 80-103 (308)
380 3b9q_A Chloroplast SRP recepto 97.1 0.00034 1.2E-08 50.5 3.3 22 9-30 101-122 (302)
381 2oap_1 GSPE-2, type II secreti 97.1 0.00028 9.7E-09 54.5 3.1 23 10-32 262-284 (511)
382 3umf_A Adenylate kinase; rossm 97.1 0.00045 1.5E-08 47.3 3.7 21 11-31 32-52 (217)
383 2z0h_A DTMP kinase, thymidylat 97.1 0.00036 1.2E-08 46.7 3.2 22 10-31 2-23 (197)
384 1iy2_A ATP-dependent metallopr 97.1 0.00036 1.2E-08 49.6 3.3 23 10-32 75-97 (278)
385 3d31_A Sulfate/molybdate ABC t 97.1 0.00021 7.3E-09 52.5 2.1 23 10-32 28-50 (348)
386 1in4_A RUVB, holliday junction 97.1 0.00035 1.2E-08 51.1 3.2 24 9-32 52-75 (334)
387 3gd7_A Fusion complex of cysti 97.1 0.00033 1.1E-08 52.2 3.1 22 10-31 49-70 (390)
388 3r20_A Cytidylate kinase; stru 97.1 0.00045 1.5E-08 47.8 3.5 25 7-31 8-32 (233)
389 2pbr_A DTMP kinase, thymidylat 97.0 0.00041 1.4E-08 46.3 3.2 21 10-30 2-22 (195)
390 2vli_A Antibiotic resistance p 97.0 0.00027 9.1E-09 46.8 2.2 24 8-31 5-28 (183)
391 1zuh_A Shikimate kinase; alpha 97.0 0.0005 1.7E-08 44.9 3.5 22 9-30 8-29 (168)
392 2pez_A Bifunctional 3'-phospho 97.0 0.00044 1.5E-08 45.7 3.3 23 9-31 6-28 (179)
393 3cwq_A Para family chromosome 97.0 0.00097 3.3E-08 45.3 5.0 67 56-131 67-134 (209)
394 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00045 1.5E-08 47.4 3.2 22 10-31 25-46 (235)
395 1gtv_A TMK, thymidylate kinase 97.0 0.00016 5.6E-09 49.1 0.9 22 10-31 2-23 (214)
396 3kta_A Chromosome segregation 97.0 0.00048 1.7E-08 45.6 3.1 21 10-30 28-48 (182)
397 1lv7_A FTSH; alpha/beta domain 97.0 0.00061 2.1E-08 47.7 3.7 24 8-31 45-68 (257)
398 2f6r_A COA synthase, bifunctio 97.0 0.00058 2E-08 48.7 3.6 24 7-30 74-97 (281)
399 1oxx_K GLCV, glucose, ABC tran 97.0 0.00021 7.3E-09 52.6 1.3 23 10-32 33-55 (353)
400 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00042 1.4E-08 52.9 3.0 23 10-32 140-162 (460)
401 2w58_A DNAI, primosome compone 97.0 0.0006 2.1E-08 45.9 3.5 24 9-32 55-78 (202)
402 2p65_A Hypothetical protein PF 96.9 0.00044 1.5E-08 45.6 2.7 24 8-31 43-66 (187)
403 1ltq_A Polynucleotide kinase; 96.9 0.00066 2.3E-08 48.7 3.8 22 9-30 3-24 (301)
404 3nwj_A ATSK2; P loop, shikimat 96.9 0.00052 1.8E-08 48.1 3.1 22 9-30 49-70 (250)
405 3bos_A Putative DNA replicatio 96.9 0.00064 2.2E-08 46.8 3.5 24 8-31 52-75 (242)
406 2vp4_A Deoxynucleoside kinase; 96.9 0.00035 1.2E-08 48.2 2.1 24 8-31 20-43 (230)
407 2og2_A Putative signal recogni 96.9 0.00057 1.9E-08 50.4 3.3 22 9-30 158-179 (359)
408 2grj_A Dephospho-COA kinase; T 96.9 0.00086 3E-08 45.0 3.8 25 7-31 11-35 (192)
409 1cr0_A DNA primase/helicase; R 96.9 0.0006 2E-08 48.9 3.1 22 10-31 37-58 (296)
410 1m7g_A Adenylylsulfate kinase; 96.9 0.00069 2.4E-08 46.0 3.2 24 8-31 25-48 (211)
411 2yhs_A FTSY, cell division pro 96.9 0.00065 2.2E-08 52.1 3.3 22 9-30 294-315 (503)
412 3pfi_A Holliday junction ATP-d 96.9 0.0054 1.8E-07 44.6 8.1 24 8-31 55-78 (338)
413 3t15_A Ribulose bisphosphate c 96.9 0.00077 2.7E-08 48.3 3.5 26 7-32 35-60 (293)
414 3n70_A Transport activator; si 96.9 0.00085 2.9E-08 42.8 3.3 25 8-32 24-48 (145)
415 1f2t_A RAD50 ABC-ATPase; DNA d 96.8 0.00073 2.5E-08 43.4 3.0 19 11-29 26-44 (149)
416 2obl_A ESCN; ATPase, hydrolase 96.8 0.00074 2.5E-08 49.6 3.4 23 10-32 73-95 (347)
417 1tue_A Replication protein E1; 96.8 0.00061 2.1E-08 46.1 2.7 22 10-31 60-81 (212)
418 1n0w_A DNA repair protein RAD5 96.8 0.00077 2.6E-08 46.6 3.3 22 10-31 26-47 (243)
419 2cvh_A DNA repair and recombin 96.8 0.00077 2.6E-08 45.8 3.2 21 10-30 22-42 (220)
420 4eaq_A DTMP kinase, thymidylat 96.8 0.0011 3.6E-08 45.9 3.8 25 8-32 26-50 (229)
421 1nij_A Hypothetical protein YJ 96.8 0.00062 2.1E-08 49.4 2.5 24 9-32 5-28 (318)
422 1svm_A Large T antigen; AAA+ f 96.8 0.00083 2.8E-08 49.9 3.2 22 9-30 170-191 (377)
423 2qz4_A Paraplegin; AAA+, SPG7, 96.8 0.0011 3.8E-08 46.4 3.7 24 8-31 39-62 (262)
424 3euj_A Chromosome partition pr 96.8 0.00088 3E-08 51.3 3.3 21 10-30 31-51 (483)
425 3b9p_A CG5977-PA, isoform A; A 96.8 0.00097 3.3E-08 47.7 3.4 25 8-32 54-78 (297)
426 3gmt_A Adenylate kinase; ssgci 96.7 0.0012 4E-08 45.6 3.5 25 6-30 6-30 (230)
427 3h4m_A Proteasome-activating n 96.7 0.0011 3.9E-08 47.0 3.5 24 8-31 51-74 (285)
428 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0014 4.9E-08 51.0 4.3 23 10-32 49-71 (538)
429 3d3q_A TRNA delta(2)-isopenten 96.7 0.0013 4.3E-08 48.1 3.7 23 9-31 8-30 (340)
430 1d2n_A N-ethylmaleimide-sensit 96.7 0.0015 5.3E-08 46.1 4.1 26 6-31 62-87 (272)
431 3cf0_A Transitional endoplasmi 96.7 0.0011 3.9E-08 47.6 3.4 24 9-32 50-73 (301)
432 4fcw_A Chaperone protein CLPB; 96.7 0.0016 5.6E-08 46.7 4.3 24 9-32 48-71 (311)
433 2dpy_A FLII, flagellum-specifi 96.7 0.0011 3.8E-08 50.3 3.4 23 10-32 159-181 (438)
434 2chg_A Replication factor C sm 96.7 0.0012 4E-08 44.7 3.2 22 10-31 40-61 (226)
435 1njg_A DNA polymerase III subu 96.7 0.0012 4E-08 45.3 3.2 22 10-31 47-68 (250)
436 1q3t_A Cytidylate kinase; nucl 96.7 0.0014 4.9E-08 45.3 3.7 24 7-30 15-38 (236)
437 3syl_A Protein CBBX; photosynt 96.7 0.0015 5.1E-08 47.0 3.8 23 8-30 67-89 (309)
438 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.0012 4E-08 48.9 3.2 19 11-29 26-44 (365)
439 1l8q_A Chromosomal replication 96.7 0.0012 4E-08 48.0 3.2 23 9-31 38-60 (324)
440 3crm_A TRNA delta(2)-isopenten 96.6 0.0016 5.5E-08 47.3 3.8 23 9-31 6-28 (323)
441 3ozx_A RNAse L inhibitor; ATP 96.6 0.0015 5.1E-08 50.9 3.8 23 10-32 27-49 (538)
442 3j16_B RLI1P; ribosome recycli 96.6 0.0017 5.7E-08 51.3 4.1 23 10-32 105-127 (608)
443 1nlf_A Regulatory protein REPA 96.6 0.0013 4.4E-08 46.7 3.1 21 10-30 32-52 (279)
444 2qmh_A HPR kinase/phosphorylas 96.6 0.0014 4.9E-08 44.1 3.1 24 9-32 35-58 (205)
445 3ake_A Cytidylate kinase; CMP 96.6 0.0015 5.1E-08 44.0 3.2 21 10-30 4-24 (208)
446 3b60_A Lipid A export ATP-bind 96.6 0.0012 4.1E-08 51.9 3.1 23 10-32 371-393 (582)
447 2ga8_A Hypothetical 39.9 kDa p 96.6 0.0022 7.4E-08 47.1 4.0 23 8-30 24-46 (359)
448 3b5x_A Lipid A export ATP-bind 96.5 0.0019 6.4E-08 50.9 3.9 23 10-32 371-393 (582)
449 4b4t_M 26S protease regulatory 96.5 0.0019 6.5E-08 48.8 3.7 24 8-31 215-238 (434)
450 1a7j_A Phosphoribulokinase; tr 96.5 0.00081 2.8E-08 48.2 1.6 23 8-30 5-27 (290)
451 1c9k_A COBU, adenosylcobinamid 96.5 0.0018 6.2E-08 42.9 3.1 21 11-31 2-22 (180)
452 3zvl_A Bifunctional polynucleo 96.5 0.0015 5.1E-08 49.2 3.1 24 8-31 258-281 (416)
453 3ozx_A RNAse L inhibitor; ATP 96.5 0.0019 6.5E-08 50.3 3.7 23 10-32 296-318 (538)
454 2px0_A Flagellar biosynthesis 96.5 0.0017 5.7E-08 46.7 3.1 21 9-29 106-126 (296)
455 3eie_A Vacuolar protein sortin 96.5 0.0025 8.6E-08 46.3 4.0 24 8-31 51-74 (322)
456 4b4t_K 26S protease regulatory 96.5 0.0021 7E-08 48.6 3.7 24 8-31 206-229 (428)
457 1yqt_A RNAse L inhibitor; ATP- 96.5 0.0025 8.5E-08 49.7 4.2 23 10-32 314-336 (538)
458 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0019 6.7E-08 46.9 3.4 24 9-32 46-69 (322)
459 1ofh_A ATP-dependent HSL prote 96.5 0.0019 6.6E-08 46.2 3.4 24 8-31 50-73 (310)
460 2qby_A CDC6 homolog 1, cell di 96.5 0.0017 5.9E-08 47.9 3.2 24 8-31 45-68 (386)
461 1vma_A Cell division protein F 96.5 0.0019 6.6E-08 46.6 3.3 22 9-30 105-126 (306)
462 3bk7_A ABC transporter ATP-bin 96.5 0.0023 8E-08 50.5 4.0 23 10-32 119-141 (607)
463 1sxj_E Activator 1 40 kDa subu 96.5 0.0015 5E-08 47.9 2.7 21 11-31 39-59 (354)
464 1sxj_C Activator 1 40 kDa subu 96.5 0.0018 6.3E-08 47.3 3.2 23 10-32 48-70 (340)
465 3bk7_A ABC transporter ATP-bin 96.5 0.0024 8.3E-08 50.4 4.0 23 10-32 384-406 (607)
466 4b4t_L 26S protease subunit RP 96.4 0.0023 7.8E-08 48.4 3.7 24 8-31 215-238 (437)
467 2dr3_A UPF0273 protein PH0284; 96.4 0.0019 6.5E-08 44.7 3.1 21 10-30 25-45 (247)
468 1fnn_A CDC6P, cell division co 96.4 0.0021 7.3E-08 47.5 3.5 23 10-32 46-68 (389)
469 1p5z_B DCK, deoxycytidine kina 96.4 0.0012 4.2E-08 46.4 2.1 25 7-31 23-47 (263)
470 3foz_A TRNA delta(2)-isopenten 96.4 0.0028 9.7E-08 45.6 3.9 24 8-31 10-33 (316)
471 2yl4_A ATP-binding cassette SU 96.4 0.0013 4.3E-08 52.0 2.2 23 10-32 372-394 (595)
472 2qgz_A Helicase loader, putati 96.4 0.0023 8E-08 46.2 3.5 24 8-31 152-175 (308)
473 3qf4_B Uncharacterized ABC tra 96.4 0.0014 4.8E-08 51.8 2.4 23 10-32 383-405 (598)
474 1pzn_A RAD51, DNA repair and r 96.4 0.0021 7.1E-08 47.3 3.1 23 10-32 133-155 (349)
475 3a8t_A Adenylate isopentenyltr 96.4 0.0031 1.1E-07 46.0 3.9 24 9-32 41-64 (339)
476 2ocp_A DGK, deoxyguanosine kin 96.4 0.0029 9.9E-08 43.9 3.6 23 9-31 3-25 (241)
477 2h92_A Cytidylate kinase; ross 96.4 0.0025 8.4E-08 43.4 3.2 23 8-30 3-25 (219)
478 3j16_B RLI1P; ribosome recycli 96.4 0.003 1E-07 49.9 4.0 23 11-33 381-403 (608)
479 4b4t_J 26S protease regulatory 96.4 0.0024 8.3E-08 47.7 3.3 24 8-31 182-205 (405)
480 3exa_A TRNA delta(2)-isopenten 96.3 0.0028 9.4E-08 45.8 3.4 22 10-31 5-26 (322)
481 3co5_A Putative two-component 96.3 0.0011 3.6E-08 42.2 1.1 24 8-31 27-50 (143)
482 3qks_A DNA double-strand break 96.3 0.0028 9.4E-08 42.9 3.2 19 11-29 26-44 (203)
483 4a82_A Cystic fibrosis transme 96.3 0.0012 4.1E-08 51.9 1.6 23 10-32 369-391 (578)
484 2r62_A Cell division protease 96.3 0.001 3.4E-08 46.9 1.0 23 9-31 45-67 (268)
485 1sxj_D Activator 1 41 kDa subu 96.3 0.0027 9.3E-08 46.4 3.2 22 10-31 60-81 (353)
486 2dhr_A FTSH; AAA+ protein, hex 96.3 0.0026 8.9E-08 49.0 3.2 24 9-32 65-88 (499)
487 2qp9_X Vacuolar protein sortin 96.3 0.0028 9.4E-08 46.7 3.2 23 9-31 85-107 (355)
488 2bjv_A PSP operon transcriptio 96.3 0.0031 1.1E-07 44.3 3.4 25 8-32 29-53 (265)
489 3uk6_A RUVB-like 2; hexameric 96.3 0.0029 9.9E-08 46.6 3.3 23 9-31 71-93 (368)
490 3qf4_A ABC transporter, ATP-bi 96.3 0.0016 5.6E-08 51.3 2.0 23 10-32 371-393 (587)
491 3m6a_A ATP-dependent protease 96.2 0.0027 9.1E-08 49.6 3.2 24 9-32 109-132 (543)
492 2z4s_A Chromosomal replication 96.2 0.0028 9.5E-08 48.2 3.2 23 9-31 131-153 (440)
493 3cr8_A Sulfate adenylyltranfer 96.2 0.0018 6.2E-08 50.5 2.1 24 9-32 370-393 (552)
494 2v1u_A Cell division control p 96.2 0.0024 8.3E-08 47.1 2.7 24 8-31 44-67 (387)
495 3u61_B DNA polymerase accessor 96.2 0.048 1.6E-06 39.4 9.5 22 11-32 51-72 (324)
496 3tqf_A HPR(Ser) kinase; transf 96.2 0.0042 1.4E-07 40.8 3.5 24 9-32 17-40 (181)
497 2ce7_A Cell division protein F 96.2 0.0036 1.2E-07 48.0 3.7 23 9-31 50-72 (476)
498 3d8b_A Fidgetin-like protein 1 96.2 0.0037 1.3E-07 46.1 3.6 25 7-31 116-140 (357)
499 3te6_A Regulatory protein SIR3 96.2 0.0025 8.6E-08 46.2 2.6 25 7-31 44-68 (318)
500 1um8_A ATP-dependent CLP prote 96.2 0.0031 1.1E-07 46.7 3.2 25 8-32 72-96 (376)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.6e-39 Score=222.65 Aligned_cols=166 Identities=37% Similarity=0.636 Sum_probs=142.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
+.+||+|+|.+|+|||||++++....+...+.+|.+.++.......++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|||++++++|+.+..|+..+...... ++|+++|+||+|+.+. +.+..+++..++...+ ++|+++||++|.|++
T Consensus 92 v~di~~~~Sf~~i~~~~~~i~~~~~~----~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-~~~~e~SAktg~nV~ 164 (216)
T 4dkx_A 92 VYDITNVNSFQQTTKWIDDVRTERGS----DVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-VMFIETSAKAGYNVK 164 (216)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHTT----SSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHH
T ss_pred EeecchhHHHHHHHHHHHHHHHhcCC----CCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-CeeEEEeCCCCcCHH
Confidence 99999999999999999998876543 7899999999999765 7788999999999888 899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
++|+.|++.+...
T Consensus 165 e~F~~i~~~i~~~ 177 (216)
T 4dkx_A 165 QLFRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHHHC---
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 2
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=6.1e-36 Score=202.09 Aligned_cols=180 Identities=64% Similarity=1.061 Sum_probs=138.6
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccccchhc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLGVAFYR 79 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~ 79 (185)
|+..+...++|+++|++|+|||||++++.+..+...+.++.+.+.....+.++ +..+.+.+||+||++.+...+..+++
T Consensus 1 Ms~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 80 (182)
T 1ky3_A 1 MSSRKKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR 80 (182)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST
T ss_pred CCcccCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh
Confidence 66666778999999999999999999999998887788888888877777776 55678999999999999999999999
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++|+|+|++++.+++.+..|+..+..........+.|+++|+||+|+... .+....++...++......+++++||
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~-~~~v~~~~~~~~~~~~~~~~~~~~Sa 159 (182)
T 1ky3_A 81 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES-KKIVSEKSAQELAKSLGDIPLFLTSA 159 (182)
T ss_dssp TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG-GCCSCHHHHHHHHHHTTSCCEEEEBT
T ss_pred cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc-cccCCHHHHHHHHHhcCCCeEEEEec
Confidence 99999999999999999999999998887765544557899999999999643 23456677777777555689999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcCC
Q 029929 160 KEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
++|.|+++++++|.+.+.++++
T Consensus 160 ~~~~gi~~l~~~l~~~~~~~~~ 181 (182)
T 1ky3_A 160 KNAINVDTAFEEIARSALQQNQ 181 (182)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887643
No 3
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=2.5e-36 Score=204.42 Aligned_cols=173 Identities=40% Similarity=0.693 Sum_probs=121.9
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+++|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (183)
T 2fu5_C 1 MAKTYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRG 80 (183)
T ss_dssp --CCCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTT
T ss_pred CCcccCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhc
Confidence 55555678999999999999999999999888777778888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++|+|+|++++++++.+..|+..+..... .+.|+++|+||+|+.+. +....+++..++...+ ++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 153 (183)
T 2fu5_C 81 AMGIMLVYDITNEKSFDNIRNWIRNIEEHAS----ADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-IKFMETSAK 153 (183)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-CEEEECCC-
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999999999999889888876543 26799999999999764 4566777888887777 899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|.|+++++++|.+.+..+.
T Consensus 154 ~~~~i~~l~~~l~~~i~~~~ 173 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAKM 173 (183)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999887653
No 4
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.5e-36 Score=200.97 Aligned_cols=172 Identities=41% Similarity=0.705 Sum_probs=147.9
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+|+|++|+|||||++++.+..+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 81 (181)
T 3tw8_B 2 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRG 81 (181)
T ss_dssp ----CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTT
T ss_pred CccccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhcc
Confidence 55566778999999999999999999999998888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++++|+|++++++++.+..|+..+..... +.|+++|+||+|+... +....++...++...+ ++++++||+
T Consensus 82 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (181)
T 3tw8_B 82 THGVIVVYDVTSAESFVNVKRWLHEINQNCD-----DVCRILVGNKNDDPER--KVVETEDAYKFAGQMG-IQLFETSAK 153 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHCT-----TSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCEEECBTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCCCchh--cccCHHHHHHHHHHcC-CeEEEEECC
Confidence 9999999999999999999999988876543 6799999999998764 4556677778877777 799999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|.|+++++++|.+.+...+
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~ 173 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAK 173 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999887654
No 5
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=4.7e-35 Score=200.13 Aligned_cols=171 Identities=39% Similarity=0.692 Sum_probs=151.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 92 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 92 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence 34579999999999999999999999998888889998889888888998889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....+....++...+ ++++++||++|.|
T Consensus 93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~----~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 165 (196)
T 3tkl_A 93 IVVYDVTDQESFNNVKQWLQEIDRYASE----NVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN 165 (196)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEEECTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCCCC
Confidence 9999999999999999998888776542 6799999999999865 5566777888888777 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 029929 165 VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~~ 182 (185)
+++++++|.+.+..+...
T Consensus 166 v~~l~~~l~~~i~~~~~~ 183 (196)
T 3tkl_A 166 VEQSFMTMAAEIKKRMGP 183 (196)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 999999999999877543
No 6
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=7.6e-35 Score=200.71 Aligned_cols=173 Identities=37% Similarity=0.664 Sum_probs=151.2
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (206)
T 2bcg_Y 1 MNSEYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRG 80 (206)
T ss_dssp --CCCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTT
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccC
Confidence 55555677999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+
T Consensus 81 ~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 153 (206)
T 2bcg_Y 81 SHGIIIVYDVTDQESFNGVKMWLQEIDRYAT----STVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK-MPFLETSAL 153 (206)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CCEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEeCC
Confidence 9999999999999999999999888876542 26799999999999865 4556677777877776 899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|.|+++++++|.+.+.++.
T Consensus 154 ~g~gi~~l~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKESM 173 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999988654
No 7
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=9.4e-35 Score=195.57 Aligned_cols=173 Identities=54% Similarity=0.988 Sum_probs=148.5
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999988888888888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++.+++.+..|+..+..........+.|+++|+||+|+.. +....+++..++.....++++++||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 160 (177)
T 1wms_A 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNGDYPYFETSAKDATN 160 (177)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTTCCCEEECCTTTCTT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHhcCCceEEEEeCCCCCC
Confidence 99999999999999999999888776554445789999999999973 456677788887755568999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+++++++|.+.+.+++
T Consensus 161 i~~l~~~l~~~~~~~~ 176 (177)
T 1wms_A 161 VAAAFEEAVRRVLATE 176 (177)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999988653
No 8
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.1e-35 Score=202.08 Aligned_cols=177 Identities=77% Similarity=1.243 Sum_probs=150.0
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 1 M~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 80 (207)
T 1vg8_A 1 MTSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRG 80 (207)
T ss_dssp ------CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTT
T ss_pred CCcccCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhC
Confidence 66667788999999999999999999999999888888888888888888888888999999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++|+|+|++++.+++.+..|+..+..........+.|+++|+||+|+.. +....++...++.....++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~ 157 (207)
T 1vg8_A 81 ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYSKNNIPYFETSAK 157 (207)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHHTTSCCEEECBTT
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHhcCCceEEEEeCC
Confidence 999999999999999999999998888776544444789999999999973 34566777777774555899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|.|+++++++|.+.+..++
T Consensus 158 ~g~gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 158 EAINVEQAFQTIARNALKQE 177 (207)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999887653
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.1e-35 Score=200.33 Aligned_cols=173 Identities=36% Similarity=0.655 Sum_probs=150.8
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.
T Consensus 3 m~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ 82 (186)
T 2bme_A 3 MSETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRG 82 (186)
T ss_dssp -CCCCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTT
T ss_pred cccccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhc
Confidence 55555678999999999999999999999999888888888888888888888888899999999999999989999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++|+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+
T Consensus 83 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~ 155 (186)
T 2bme_A 83 AAGALLVYDITSRETYNALTNWLTDARMLAS----QNIVIILCGNKKDLDAD--REVTFLEASRFAQENE-LMFLETSAL 155 (186)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEecCC
Confidence 9999999999999999999989888766543 27799999999999653 4556677778877776 899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcC
Q 029929 161 EGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~ 180 (185)
+|.|+++++++|.+.+.++.
T Consensus 156 ~~~gi~~l~~~l~~~~~~~~ 175 (186)
T 2bme_A 156 TGENVEEAFVQCARKILNKI 175 (186)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999888653
No 10
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=8.9e-35 Score=196.79 Aligned_cols=169 Identities=29% Similarity=0.526 Sum_probs=148.5
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
.+...++|+|+|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+||+||++.+...+..+++.+|+
T Consensus 14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 92 (183)
T 3kkq_A 14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDG 92 (183)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSE
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence 345679999999999999999999999988877788877666 6777788888899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec-cC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK-EG 162 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~ 162 (185)
+++|+|++++++++.+..|+..+....... +.|+++|+||+|+.+. +....+++..++...+ ++++++||+ ++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~ 166 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRE---SFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-IPYIETSAKDPP 166 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSS---CCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-CCEEEEBCSSSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-CeEEEeccCCCC
Confidence 999999999999999999988887654332 7799999999999764 5677888888888887 899999999 99
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
.|+++++++|.+.+.++
T Consensus 167 ~~v~~l~~~l~~~i~~q 183 (183)
T 3kkq_A 167 LNVDKTFHDLVRVIRQQ 183 (183)
T ss_dssp BSHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999988753
No 11
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=6.7e-35 Score=196.96 Aligned_cols=171 Identities=35% Similarity=0.645 Sum_probs=147.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|.+|+|||||++++.+..+.....++.+.++....+.+.+..+.+.+||+||+..+...+..+++.+|++
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 88 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA 88 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence 45679999999999999999999999988887788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++.+++.+..|+..+..... ++.|+++|+||+|+... +....+++..++...+ ++++++||++|.|
T Consensus 89 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 161 (181)
T 2efe_B 89 IIVFDVTNQASFERAKKWVQELQAQGN----PNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG-LFFMETSAKTATN 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCSSSCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC-CEEEEEECCCCCC
Confidence 999999999999999999988877643 26799999999999765 4566778888887776 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 029929 165 VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~~ 182 (185)
+++++++|.+.+...++.
T Consensus 162 i~~l~~~l~~~~~~~~~~ 179 (181)
T 2efe_B 162 VKEIFYEIARRLPRVQPT 179 (181)
T ss_dssp HHHHHHHHHHTCC-----
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999988766543
No 12
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.1e-35 Score=201.36 Aligned_cols=169 Identities=38% Similarity=0.637 Sum_probs=148.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 45699999999999999999999999988888888888888888888888899999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 104 ~v~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~gv 176 (201)
T 2ew1_A 104 LTYDITCEESFRCLPEWLREIEQYAS----NKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD-MYYLETSAKESDNV 176 (201)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988876543 26799999999999754 4556677777777776 89999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++++|.+.+..+..
T Consensus 177 ~~l~~~l~~~i~~~~~ 192 (201)
T 2ew1_A 177 EKLFLDLACRLISEAR 192 (201)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999886543
No 13
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=7.5e-35 Score=196.57 Aligned_cols=175 Identities=32% Similarity=0.526 Sum_probs=147.9
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|.......++|+++|.+|+|||||+++|.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.
T Consensus 2 m~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 80 (181)
T 2fn4_A 2 MDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRA 80 (181)
T ss_dssp --CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhh
Confidence 5455667799999999999999999999999888777777776664 666778888899999999999999999999999
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++++|+|++++++++.+..|+..+...... .+.|+++|+||+|+... +....++...++...+ ++++++||+
T Consensus 81 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~ 154 (181)
T 2fn4_A 81 GHGFLLVFAINDRQSFNEVGKLFTQILRVKDR---DDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH-VAYFEASAK 154 (181)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTS---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECBTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCC
Confidence 99999999999999999998888888655432 26799999999999754 4456677777777666 899999999
Q ss_pred cCCCHHHHHHHHHHHHhhcCCc
Q 029929 161 EGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
+|.|+++++++|.+.+.+....
T Consensus 155 ~~~gv~~l~~~l~~~~~~~~~~ 176 (181)
T 2fn4_A 155 LRLNVDEAFEQLVRAVRKYQEQ 176 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999876554
No 14
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=7.5e-35 Score=198.57 Aligned_cols=168 Identities=38% Similarity=0.682 Sum_probs=144.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.|+
T Consensus 99 ~v~d~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 171 (191)
T 2a5j_A 99 LVYDITRRETFNHLTSWLEDARQHSS----SNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG-LIFMETSAKTACNV 171 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999899888876543 26799999999999754 4556777888887776 89999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
++++++|.+.+.++.
T Consensus 172 ~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 172 EEAFINTAKEIYRKI 186 (191)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999988754
No 15
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=7.5e-35 Score=200.13 Aligned_cols=170 Identities=35% Similarity=0.572 Sum_probs=141.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 106 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence 45699999999999999999999999887777888888887888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....+++..++...+..+++++||++|.|+
T Consensus 107 lv~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 180 (201)
T 2hup_A 107 LAYDITKRSSFLSVPHWIEDVRKYAG----SNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYDILCAIETSAKDSSNV 180 (201)
T ss_dssp EEEETTBHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTTCSEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCccccc--cccCHHHHHHHHHHcCCCEEEEEeCCCCCCH
Confidence 99999999999999999988876642 36799999999999754 4566778888888777339999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++++|.+.+..+..
T Consensus 181 ~~l~~~l~~~i~~~~~ 196 (201)
T 2hup_A 181 EEAFLRVATELIMRHG 196 (201)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999987654
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.3e-34 Score=195.04 Aligned_cols=166 Identities=37% Similarity=0.677 Sum_probs=146.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||++++.+..+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 92 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 92 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence 45799999999999999999999999988777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....+++.+++...+ ++++++||++|.|+
T Consensus 93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 165 (179)
T 1z0f_A 93 MVYDITRRSTYNHLSSWLTDARNLTNP----NTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG-LLFLEASAKTGENV 165 (179)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCT----TCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEeCcCHHHHHHHHHHHHHHHHhcCC----CCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 999999999999999998888766432 6799999999999654 4556777888887776 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029929 166 EAAFECIAKNALK 178 (185)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (185)
++++++|.+.+.+
T Consensus 166 ~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 166 EDAFLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998764
No 17
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.3e-34 Score=195.72 Aligned_cols=170 Identities=31% Similarity=0.449 Sum_probs=146.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3568999999999999999999998888877788887766 667778888899999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+...... .+.|+++|+||+|+... +....+++..++...+ ++++++||++|.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 156 (181)
T 3t5g_A 83 LVYSVTSIKSFEVIKVIHGKLLDMVGK---VQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-AAFLESSAKENQTA 156 (181)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEECCTTSHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-CcEEEEecCCCCCH
Confidence 999999999999999999888776543 26799999999999765 6677888888888887 89999999999999
Q ss_pred HHHHHHHHHHHhhcCCc
Q 029929 166 EAAFECIAKNALKNEPQ 182 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~~ 182 (185)
++++++|.+.+...+..
T Consensus 157 ~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 157 VDVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999876543
No 18
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=5.6e-35 Score=199.37 Aligned_cols=170 Identities=41% Similarity=0.656 Sum_probs=146.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+|+|.+|+|||||++++++..+.....++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 35679999999999999999999999988777788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....+++..++...+ ++++++||+++.|
T Consensus 100 ilV~d~~~~~s~~~~~~~~~~i~~~~~----~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~g 172 (192)
T 2fg5_A 100 VIVYDITKQDSFYTLKKWVKELKEHGP----ENIVMAIAGNKCDLSDI--REVPLKDAKEYAESIG-AIVVETSAKNAIN 172 (192)
T ss_dssp EEEEETTCTHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTTT-CEEEECBTTTTBS
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcC
Confidence 999999999999999999988876642 26799999999999753 4566778888888776 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+.+..+
T Consensus 173 i~~l~~~l~~~i~~~~~ 189 (192)
T 2fg5_A 173 IEELFQGISRQIPPLDP 189 (192)
T ss_dssp HHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhhCC
Confidence 99999999998876554
No 19
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2e-34 Score=196.13 Aligned_cols=167 Identities=35% Similarity=0.660 Sum_probs=147.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+||+||++.+...+..+++.+|++|
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 99 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL 99 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence 45699999999999999999999999988777888888887788888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 172 (189)
T 2gf9_A 100 LMYDIANQESFAAVQDWATQIKTYSW----DNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG-FEFFEASAKENINV 172 (189)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC-CeEEEEECCCCCCH
Confidence 99999999999999889888876642 26799999999999754 4556677888888777 89999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|.+.+.++
T Consensus 173 ~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 173 KQVFERLVDVICEK 186 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998765
No 20
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.8e-34 Score=196.98 Aligned_cols=171 Identities=35% Similarity=0.609 Sum_probs=148.4
Q ss_pred ccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCc
Q 029929 3 SRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (185)
Q Consensus 3 ~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (185)
......++|+|+|++|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 89 (195)
T 1x3s_A 10 EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQ 89 (195)
T ss_dssp TTEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCC
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCC
Confidence 33445699999999999999999999999988888888888888888888888899999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
++|+|+|++++.+++.+..|+..+..... ..+.|+++|+||+|+.. +....++...++...+ ++++++||+++
T Consensus 90 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 162 (195)
T 1x3s_A 90 GVILVYDVTRRDTFVKLDNWLNELETYCT---RNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS-MLFIEASAKTC 162 (195)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHTTCCS---CSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT-CEEEECCTTTC
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcC---cCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC-CEEEEecCCCC
Confidence 99999999999999999888888765432 23679999999999954 4456677777877776 89999999999
Q ss_pred CCHHHHHHHHHHHHhhcC
Q 029929 163 FNVEAAFECIAKNALKNE 180 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~ 180 (185)
.|+++++++|.+.+.+..
T Consensus 163 ~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 163 DGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TTHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHhhh
Confidence 999999999999998654
No 21
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=2.9e-34 Score=196.09 Aligned_cols=171 Identities=28% Similarity=0.526 Sum_probs=147.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 99 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL 99 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence 45699999999999999999999999988777788776664 45667888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
+|+|++++++++.+ ..|...+..... +.|+++|+||+|+.....+....+++..++...+...++++||++|.|
T Consensus 100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 100 LCFAVNNRTSFDNISTKWEPEIKHYID-----TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 99999999999997 667777765532 679999999999987655777888899998888733499999999999
Q ss_pred HHHHHHHHHHHHhhcCCc
Q 029929 165 VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~~ 182 (185)
+++++++|.+.+..+++.
T Consensus 175 i~~l~~~l~~~i~~~~~~ 192 (194)
T 3reg_A 175 LNEVFEKSVDCIFSNKPV 192 (194)
T ss_dssp HHHHHHHHHHHHHCSCC-
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999999887654
No 22
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=1e-34 Score=194.09 Aligned_cols=166 Identities=37% Similarity=0.639 Sum_probs=140.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999888778888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+...... +.|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 156 (170)
T 1z08_A 84 LVYDITDEDSFQKVKNWVKELRKMLGN----EICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-AKHYHTSAKQNKGI 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHGG----GSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEEBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCC----CCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CeEEEecCCCCCCH
Confidence 999999999999999898887665432 6799999999999754 4556777888888776 89999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029929 166 EAAFECIAKNALK 178 (185)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (185)
++++++|.+.+.+
T Consensus 157 ~~l~~~l~~~~~~ 169 (170)
T 1z08_A 157 EELFLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.1e-34 Score=192.48 Aligned_cols=167 Identities=38% Similarity=0.692 Sum_probs=140.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999887888888888888888888888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++...++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gv~ 153 (170)
T 1g16_A 82 VYDITDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNVN 153 (170)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCCc---CccCHHHHHHHHHHcC-CeEEEEECCCCCCHH
Confidence 9999999999999899888877653 2679999999999943 4456677777877776 899999999999999
Q ss_pred HHHHHHHHHHhhcCC
Q 029929 167 AAFECIAKNALKNEP 181 (185)
Q Consensus 167 ~~~~~i~~~~~~~~~ 181 (185)
+++++|.+.+.++.+
T Consensus 154 ~l~~~l~~~~~~~~~ 168 (170)
T 1g16_A 154 EIFFTLAKLIQEKID 168 (170)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987643
No 24
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.8e-34 Score=192.61 Aligned_cols=169 Identities=40% Similarity=0.678 Sum_probs=138.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
...++|+++|.+|+|||||++++.+..+. ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 87 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL 87 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence 45799999999999999999999998875 45678888888777778888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.|
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 160 (180)
T 2g6b_A 88 LLLYDVTNKASFDNIQAWLTEIHEYAQ----HDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-LPFMETSAKTGLN 160 (180)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-CCEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 999999999999999999888876653 27799999999999864 4556677777777776 7999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+.+++.
T Consensus 161 i~~l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 161 VDLAFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999886654
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.4e-34 Score=193.33 Aligned_cols=166 Identities=39% Similarity=0.665 Sum_probs=145.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|.+|+|||||++++++..+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 34579999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++++++.+..|+..+..... ++.|+++|+||+|+... +....++...++...+ ++++++||++|.|
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQAS----PNIVIALSGNKADLANK--RAVDFQEAQSYADDNS-LLFMETSAKTSMN 155 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECccCccc--cccCHHHHHHHHHHcC-CeEEEEeCCCCCC
Confidence 999999999999999889888876543 26799999999999754 4456677777777766 8999999999999
Q ss_pred HHHHHHHHHHHHh
Q 029929 165 VEAAFECIAKNAL 177 (185)
Q Consensus 165 i~~~~~~i~~~~~ 177 (185)
+++++++|.+.+.
T Consensus 156 i~~l~~~i~~~~~ 168 (170)
T 1r2q_A 156 VNEIFMAIAKKLP 168 (170)
T ss_dssp HHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-35 Score=198.81 Aligned_cols=169 Identities=38% Similarity=0.676 Sum_probs=140.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i 102 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI 102 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 35679999999999999999999999888777788888888888888888889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... ++...++...++.....++++++||++|.|
T Consensus 103 ilV~D~~~~~s~~~~~~~~~~i~~~~~----~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~~~~~~~~SA~~g~g 176 (192)
T 2il1_A 103 ILVYDITKKETFDDLPKWMKMIDKYAS----EDAELLLVGNKLDCETD--REITRQQGEKFAQQITGMRFCEASAKDNFN 176 (192)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTSTTCEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHhcCCCeEEEEeCCCCCC
Confidence 999999999999999888887766543 26799999999999754 455667778887776558999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029929 165 VEAAFECIAKNALKN 179 (185)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (185)
+++++++|.+.+.++
T Consensus 177 i~~l~~~l~~~i~~~ 191 (192)
T 2il1_A 177 VDEIFLKLVDDILKK 191 (192)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 27
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=4e-34 Score=193.94 Aligned_cols=167 Identities=25% Similarity=0.427 Sum_probs=142.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|.+|+|||||++++++..+...+.++. ..+ ...+.+++..+.+.+|||+|++.+. +++.+|++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~ 89 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAV 89 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEE
Confidence 3567999999999999999999999998887666663 333 4677788888999999999988766 77889999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|||++++++++.+..|+..+..... ..+.|+++|+||+|+.....+....+++..++...+.++++++||++|.|
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 90 VFVFSLEDEISFQTVYNYFLRLCSFRN---ASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHTTSC---GGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999889888865432 23679999999999976555778888899999888768999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+..+++
T Consensus 167 v~~lf~~l~~~i~~~~~ 183 (184)
T 3ihw_A 167 VERVFQDVAQKVVALRK 183 (184)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999987754
No 28
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-35 Score=200.96 Aligned_cols=170 Identities=35% Similarity=0.641 Sum_probs=150.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....+||+|+|.+|+|||||+++|++..+.....++.+.+.....+...+..+.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 35679999999999999999999999988877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||++|.|
T Consensus 100 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 172 (191)
T 3dz8_A 100 ILMYDITNEESFNAVQDWATQIKTYSW----DNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG-FDFFEASAKENIS 172 (191)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 999999999999999999988876542 27799999999999754 5566777888888777 7999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+.++..
T Consensus 173 i~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 173 VRQAFERLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 99999999999987654
No 29
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=2.3e-34 Score=191.96 Aligned_cols=165 Identities=33% Similarity=0.702 Sum_probs=145.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999999888888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+.... .+.|+++|+||+|+... +....+++..++...+ ++++++||+++.|+
T Consensus 83 ~v~d~~~~~s~~~~~~~~~~i~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 154 (168)
T 1z2a_A 83 LVFSTTDRESFEAISSWREKVVAEV-----GDIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK-LRFYRTSVKEDLNV 154 (168)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHH-----CSCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC-CeEEEEecCCCCCH
Confidence 9999999999999988988887765 26799999999999754 4456677778877777 79999999999999
Q ss_pred HHHHHHHHHHHhh
Q 029929 166 EAAFECIAKNALK 178 (185)
Q Consensus 166 ~~~~~~i~~~~~~ 178 (185)
++++++|.+.+.+
T Consensus 155 ~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 155 SEVFKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998864
No 30
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-34 Score=192.46 Aligned_cols=165 Identities=38% Similarity=0.644 Sum_probs=144.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|++|+|||||++++.+..+.....++.+.++....+.+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV 82 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence 58999999999999999999999988877888888888888888888889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-ceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-SRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
+|++++.+++.+..|+..+..... .+.|+++|+||+|+.... .++...+....++...+ ++++++||++|.|++
T Consensus 83 ~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 157 (170)
T 1ek0_A 83 YDVTKPQSFIKARHWVKELHEQAS----KDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-LLFFETSAKTGENVN 157 (170)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHSC----TTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EecCChHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-CEEEEEeCCCCCCHH
Confidence 999999999999889888877652 267999999999997542 24556677777777766 899999999999999
Q ss_pred HHHHHHHHHHh
Q 029929 167 AAFECIAKNAL 177 (185)
Q Consensus 167 ~~~~~i~~~~~ 177 (185)
+++++|.+.+.
T Consensus 158 ~l~~~l~~~i~ 168 (170)
T 1ek0_A 158 DVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHHHh
Confidence 99999988764
No 31
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.8e-34 Score=191.86 Aligned_cols=167 Identities=21% Similarity=0.304 Sum_probs=131.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-cccchhccCcEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADCCVL 86 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~~i~ 86 (185)
.++|+++|++|+|||||++++.+........++.+.+.....+.+++..+.+.+||+||+..+.. ....+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998776666666666777778888888899999999999988776 66777889999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+...... .+.|+++|+||+|+.+. +....++...++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~v~ 155 (169)
T 3q85_A 82 VFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHHNTR 155 (169)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSHH
T ss_pred EEECCChHHHHHHHHHHHHHHhcccC---CCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC-CcEEEecCccCCCHH
Confidence 99999999999999999988776543 26799999999999754 5677788888888877 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
+++++|.+.+..++
T Consensus 156 ~l~~~l~~~i~~~r 169 (169)
T 3q85_A 156 ELFEGAVRQIRLRR 169 (169)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 32
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=5.2e-34 Score=190.61 Aligned_cols=165 Identities=38% Similarity=0.655 Sum_probs=145.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.+.++|+++|++|+|||||++++.+..+.....++.+.+.......+.+....+.+|||||++.+......+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45699999999999999999999999988888888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+..... +..|+++|+||+|+... ++...++...++...+ ++++++||+++.|+
T Consensus 84 ~v~d~~~~~s~~~~~~~~~~l~~~~~----~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 156 (170)
T 1z0j_A 84 IVYDITKEETFSTLKNWVRELRQHGP----PSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH-AIFVETSAKNAINI 156 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC----TTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTBSH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCC----CCCcEEEEEECCccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCcCH
Confidence 99999999999999888888876532 36799999999999754 4556677777877776 89999999999999
Q ss_pred HHHHHHHHHHHh
Q 029929 166 EAAFECIAKNAL 177 (185)
Q Consensus 166 ~~~~~~i~~~~~ 177 (185)
++++++|.+.++
T Consensus 157 ~~l~~~i~~~i~ 168 (170)
T 1z0j_A 157 NELFIEISRRIP 168 (170)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 33
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.9e-34 Score=195.79 Aligned_cols=170 Identities=41% Similarity=0.671 Sum_probs=146.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE-EEEEEECCc---------EEEEEEecCCChhhhcccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL-TKEVQFEDR---------LFTLQIWDTAGQERFQSLG 74 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~ 74 (185)
....++|+|+|++|+|||||+++|.+..+...+.++.+.++. ...+.+.+. .+.+.+|||||++.+...+
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 456799999999999999999999998888777888887776 556666655 7899999999999999989
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
..+++.+|++|+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+... +....+++..++...+ +++
T Consensus 88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~ 161 (195)
T 3bc1_A 88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS---ENPDIVLCGNKSDLEDQ--RAVKEEEARELAEKYG-IPY 161 (195)
T ss_dssp HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS---SSCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CCE
T ss_pred HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--cccCHHHHHHHHHHcC-CCE
Confidence 99999999999999999999999998998888766532 26799999999999754 4556677888877776 799
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+++||+++.|+++++++|.+.+.++.
T Consensus 162 ~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 162 FETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999987654
No 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-34 Score=195.04 Aligned_cols=167 Identities=34% Similarity=0.668 Sum_probs=146.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+...+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 85 (203)
T 1zbd_A 6 DYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFI 85 (203)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEE
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEE
Confidence 45699999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....+....++...+ ++++++||++|.|+
T Consensus 86 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 158 (203)
T 1zbd_A 86 LMYDITNEESFNAVQDWSTQIKTYSW----DNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG-FEFFEASAKDNINV 158 (203)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSC----SSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSS
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC-CeEEEEECCCCCCH
Confidence 99999999999999889888876542 26799999999999764 4566777888888777 79999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|.+.+.++
T Consensus 159 ~~l~~~l~~~i~~~ 172 (203)
T 1zbd_A 159 KQTFERLVDVICEK 172 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988654
No 35
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=2.7e-34 Score=196.46 Aligned_cols=172 Identities=20% Similarity=0.293 Sum_probs=140.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-cccchhccCcE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS-LGVAFYRGADC 83 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~d~ 83 (185)
....++|+|+|.+|+|||||+++|.+........++.+.+.....+.+++..+.+.+|||+|+..+.. ++..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~ 99 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDA 99 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSE
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCE
Confidence 35679999999999999999999976554434455666666677778888889999999999887654 66778899999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
+|+|||++++++++.+..|+..+...... .+.|+++|+||+|+... +.+..++...++...+ ++++++||+++.
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~-~~~~e~Sa~~~~ 173 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPH---HDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS-CKHIETSAALHH 173 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTT---SCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-CEEEEEBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC-CEEEEEcCCCCC
Confidence 99999999999999999999888765432 26799999999999764 4566777888887776 799999999999
Q ss_pred CHHHHHHHHHHHHhhcCCc
Q 029929 164 NVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~~ 182 (185)
|+++++++|++.+..++.+
T Consensus 174 ~v~~lf~~l~~~i~~~~~~ 192 (195)
T 3cbq_A 174 NTRELFEGAVRQIRLRRGR 192 (195)
T ss_dssp SHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHHHHHHHHhcCC
Confidence 9999999999999876544
No 36
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.1e-34 Score=197.76 Aligned_cols=168 Identities=36% Similarity=0.627 Sum_probs=137.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 102 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL 102 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence 45699999999999999999999998888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 103 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~SA~~g~gi 175 (200)
T 2o52_A 103 LVYDITSRETYNSLAAWLTDARTLAS----PNIVVILCGNKKDLDPE--REVTFLEASRFAQENE-LMFLETSALTGENV 175 (200)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999888876543 26799999999999754 4456677777777776 89999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
++++++|.+.+..+.
T Consensus 176 ~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 176 EEAFLKCARTILNKI 190 (200)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887653
No 37
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=5e-34 Score=194.13 Aligned_cols=167 Identities=37% Similarity=0.636 Sum_probs=142.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-ccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-SLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~d~~ 84 (185)
...++|+|+|.+|+|||||+++|++..+.....++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+|++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i 97 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV 97 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence 456999999999999999999999998888788888888888888888888999999999999888 7788899999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC--
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG-- 162 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-- 162 (185)
|+|+|++++.+++.+..|+..+...... .+.|+++|+||+|+... ++...++...++...+ ++++++||+++
T Consensus 98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~ 171 (189)
T 1z06_A 98 VFVYDMTNMASFHSLPAWIEECKQHLLA---NDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS-MPLFETSAKNPND 171 (189)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHCCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEEECCSSSGGG
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC-CEEEEEeCCcCCc
Confidence 9999999999999999999988876533 26799999999999754 4556777788877776 89999999999
Q ss_pred -CCHHHHHHHHHHHHhh
Q 029929 163 -FNVEAAFECIAKNALK 178 (185)
Q Consensus 163 -~~i~~~~~~i~~~~~~ 178 (185)
.|+++++++|.+.+.+
T Consensus 172 ~~~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 172 NDHVEAIFMTLAHKLKS 188 (189)
T ss_dssp GSCHHHHHHHHC-----
T ss_pred ccCHHHHHHHHHHHHhh
Confidence 9999999999987753
No 38
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=5.8e-34 Score=189.85 Aligned_cols=164 Identities=30% Similarity=0.547 Sum_probs=141.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999888777777776555 35566777788999999999999998999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+...... .+.|+++|+||+|+.+. +....++...++...+..+++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (167)
T 1c1y_A 82 YSITAQSTFNDLQDLREQILRVKDT---EDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWCNCAFLESSAKSKINVNE 156 (167)
T ss_dssp EETTCHHHHHTHHHHHHHHHHHHCC---SCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCc---CCCcEEEEEECcccccc--ccCCHHHHHHHHHHccCCcEEEecCCCCCCHHH
Confidence 9999999999998888888776432 36799999999999754 455677788888777558999999999999999
Q ss_pred HHHHHHHHHh
Q 029929 168 AFECIAKNAL 177 (185)
Q Consensus 168 ~~~~i~~~~~ 177 (185)
++++|.+.+.
T Consensus 157 l~~~l~~~i~ 166 (167)
T 1c1y_A 157 IFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998774
No 39
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=193.90 Aligned_cols=167 Identities=34% Similarity=0.663 Sum_probs=146.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..+++.+|++|
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 102 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL 102 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence 45699999999999999999999999888777888888888888888888899999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+.... ..+.|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 103 ~v~D~~~~~s~~~~~~~l~~i~~~~----~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 175 (193)
T 2oil_A 103 LVFDLTKHQTYAVVERWLKELYDHA----EATIVVMLVGNKSDLSQA--REVPTEEARMFAENNG-LLFLETSALDSTNV 175 (193)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHTTS----CTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhc----CCCCeEEEEEECCCcccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 9999999999999888888876543 236799999999999754 4456677778877766 89999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|.+.+.++
T Consensus 176 ~~l~~~l~~~i~~~ 189 (193)
T 2oil_A 176 ELAFETVLKEIFAK 189 (193)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 40
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-34 Score=198.49 Aligned_cols=169 Identities=35% Similarity=0.656 Sum_probs=140.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 45699999999999999999999999988778888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.|+
T Consensus 91 lV~D~~~~~s~~~~~~~l~~i~~~~~----~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 163 (223)
T 3cpj_B 91 IVYDISKSSSYENCNHWLSELRENAD----DNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ-LLFTETSALNSENV 163 (223)
T ss_dssp EEEC-CCHHHHHHHHHHHHHHHHHCC------CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCCC-CCCH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhCC----CCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999999988876642 26799999999999754 4556677778877766 89999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++++|.+.+..+..
T Consensus 164 ~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 164 DKAFEELINTIYQKVS 179 (223)
T ss_dssp HHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987643
No 41
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.3e-34 Score=192.53 Aligned_cols=165 Identities=38% Similarity=0.652 Sum_probs=144.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+|+|++|+|||||++++.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 45899999999999999999999998888888888888888888888888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||++|.|++
T Consensus 93 v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 165 (179)
T 2y8e_A 93 VYDITNTNSFHQTSKWIDDVRTERG----SDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN-VMFIETSAKAGYNVK 165 (179)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHHT----TSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEEEBTTTTBSHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence 9999999999999999888876543 26799999999999754 4556677777777776 899999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
+++++|.+.+..
T Consensus 166 ~l~~~l~~~~~~ 177 (179)
T 2y8e_A 166 QLFRRVAAALPG 177 (179)
T ss_dssp HHHHHHHHTCC-
T ss_pred HHHHHHHHHHhh
Confidence 999999987654
No 42
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.2e-34 Score=197.72 Aligned_cols=171 Identities=31% Similarity=0.460 Sum_probs=140.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..+++.+|+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 100 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV 100 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence 3569999999999999999999999998877777777666 566666777789999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+..... ..++|+++|+||+|+... +....++...++...+ ++++++||++|.|+
T Consensus 101 ~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 101 LVYSVTSLHSFQVIESLYQKLHEGHG---KTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG-ATFMESSARENQLT 174 (201)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHC--------CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECCTTCHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence 99999999999999999888875432 236799999999999754 5566777888888777 79999999999999
Q ss_pred HHHHHHHHHHHhhcCCcc
Q 029929 166 EAAFECIAKNALKNEPQE 183 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~~~ 183 (185)
++++++|.+.+.......
T Consensus 175 ~~l~~~l~~~i~~~~~~~ 192 (201)
T 3oes_A 175 QGIFTKVIQEIARVENSY 192 (201)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 999999999998776543
No 43
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-34 Score=195.72 Aligned_cols=172 Identities=22% Similarity=0.442 Sum_probs=142.0
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG 80 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 80 (185)
|+......++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 99 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPD 99 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTT
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccC
Confidence 555556779999999999999999999999988877777776665 4456677788999999999999999899999999
Q ss_pred CcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhc
Q 029929 81 ADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASK 149 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~ 149 (185)
+|++|+|+|++++++++.+ ..|+..+..... +.|+++|+||+|+... ..+.+..+++..++...
T Consensus 100 ~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 174 (205)
T 1gwn_A 100 SDAVLICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQI 174 (205)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHc
Confidence 9999999999999999998 678887766542 6799999999999742 12456677888888877
Q ss_pred CCCcEEEeeec-cCCCHHHHHHHHHHHHhh
Q 029929 150 GNIPYFETSAK-EGFNVEAAFECIAKNALK 178 (185)
Q Consensus 150 ~~~~~~~~s~~-~~~~i~~~~~~i~~~~~~ 178 (185)
+.++++++||+ ++.|+++++++|.+.+..
T Consensus 175 ~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 175 GAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 65799999999 689999999999998875
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=3.7e-34 Score=192.80 Aligned_cols=172 Identities=33% Similarity=0.518 Sum_probs=145.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
....++|+++|++|+|||||++++.+..+...+.++.+.++....+.+++ ..+.+.+|||||++.+...+..+++.+|+
T Consensus 3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 34579999999999999999999999887766777887778778888776 56899999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
+++|+|++++++++.+..|+..+........ +.| +++|+||+|+.+. +....++...++...+ ++++++||++|
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 157 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESE--TQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG-FSSHFVSAKTG 157 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHT--CCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEEECTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccC--CCCeEEEEEEccccccc--cccCHHHHHHHHHHcC-CcEEEEeCCCC
Confidence 9999999999999999888888776532110 335 8999999999754 4456677778877776 89999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 029929 163 FNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (185)
.|+++++++|.+.+.+.+.
T Consensus 158 ~gi~~l~~~l~~~~~~~~~ 176 (178)
T 2hxs_A 158 DSVFLCFQKVAAEILGIKL 176 (178)
T ss_dssp TTHHHHHHHHHHHHTTCCC
T ss_pred CCHHHHHHHHHHHHHhhhh
Confidence 9999999999999987653
No 45
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.9e-34 Score=191.31 Aligned_cols=167 Identities=22% Similarity=0.399 Sum_probs=138.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+.. +.++.+..+ ...+.+++..+.+.+|||||++. ..+++.+|++|
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i 77 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI 77 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence 356999999999999999999999988776 566666444 56677788888999999999875 45778899999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+....... ..+.|+++|+||+|+.....+....+++..++...+.++++++||++|.|+
T Consensus 78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 78 FVFSLEDENSFQAVSRLHGQLSSLRGEG-RGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCSS-SCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999988876665554322 237899999999999654446677888888887765589999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
++++++|.+.+...+
T Consensus 157 ~~lf~~l~~~~~~~~ 171 (178)
T 2iwr_A 157 DRVFQEVAQKVVTLR 171 (178)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
No 46
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.9e-34 Score=195.33 Aligned_cols=168 Identities=34% Similarity=0.584 Sum_probs=135.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||++++++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 45699999999999999999999999887777888888888888888888899999999999999888899999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----CceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----NSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+... ..+.+..+....++...+ ++++++||++
T Consensus 106 lv~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~SA~~ 180 (199)
T 2p5s_A 106 LLYDVTCEKSFLNIREWVDMIEDAAH----ETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG-ALFCETSAKD 180 (199)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHC-------CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT-CEEEECCTTT
T ss_pred EEEECCChHHHHHHHHHHHHHHHhcC----CCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC-CeEEEeeCCC
Confidence 99999999999999888887766543 26799999999999631 224566777778877776 7999999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 029929 162 GFNVEAAFECIAKNALK 178 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (185)
|.|+++++++|.+.+..
T Consensus 181 g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 181 GSNIVEAVLHLAREVKK 197 (199)
T ss_dssp CTTHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1.8e-33 Score=187.45 Aligned_cols=165 Identities=32% Similarity=0.539 Sum_probs=138.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+||+||+..+...+..+++.+|++++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC 81 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence 358999999999999999999999887766666665544 4455678888899999999999988889999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+....... +.|+++|+||+|+... ++...++...++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (168)
T 1u8z_A 82 VFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-VNYVETSAKTRANVD 155 (168)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHCCT---TSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCHH
Confidence 999999999999999988888766432 6799999999999754 4466777888877776 799999999999999
Q ss_pred HHHHHHHHHHhh
Q 029929 167 AAFECIAKNALK 178 (185)
Q Consensus 167 ~~~~~i~~~~~~ 178 (185)
+++++|.+.+.+
T Consensus 156 ~l~~~l~~~i~~ 167 (168)
T 1u8z_A 156 KVFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 48
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=189.01 Aligned_cols=168 Identities=26% Similarity=0.388 Sum_probs=130.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--hcccccchhccCcEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLGVAFYRGADCC 84 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~d~~ 84 (185)
..++|+++|++|+|||||+++|.+..+... .++.+.+.....+.+++..+.+.+|||||+.. +......+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 468999999999999999999998876543 34455666667777888888999999999877 455667788899999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. +....++...++...+ ++++++||++|.|
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~l~~~~~---~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~g 155 (175)
T 2nzj_A 82 VIVYSIADRGSFESASELRIQLRRTHQ---ADHVPIILVGNKADLARC--REVSVEEGRACAVVFD-CKFIETSATLQHN 155 (175)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHCC-------CCEEEEEECTTCTTT--CCSCHHHHHHHHHHHT-SEEEECBTTTTBS
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhhc---cCCCCEEEEEEChhhccc--cccCHHHHHHHHHHcC-CeEEEEecCCCCC
Confidence 999999999999999888887765422 236799999999999765 4556667777777766 8999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+..++.
T Consensus 156 i~~l~~~l~~~~~~~~~ 172 (175)
T 2nzj_A 156 VAELFEGVVRQLRLRRR 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 99999999999876544
No 49
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1e-33 Score=196.20 Aligned_cols=171 Identities=22% Similarity=0.404 Sum_probs=143.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|++..+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++|
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 103 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL 103 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence 4569999999999999999999999998888788887666 455667778889999999999999999999999999999
Q ss_pred EEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|||++++++++. +..|+..+..... +.|+++|+||+|+... ..+.+..++...++...+..++
T Consensus 104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 104 LCFDISRPETVDSALKKWRTEILDYCP-----STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp EEEETTCTHHHHHHHTHHHHHHHHHCT-----TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 9999999999998 6888888877642 6799999999999752 1256778888899888883399
Q ss_pred EEeeeccCCC-HHHHHHHHHHHHhhcCCc
Q 029929 155 FETSAKEGFN-VEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 155 ~~~s~~~~~~-i~~~~~~i~~~~~~~~~~ 182 (185)
+++||++|.| ++++|++|.+.+..+...
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 9999999998 999999999998876543
No 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=193.69 Aligned_cols=167 Identities=31% Similarity=0.530 Sum_probs=143.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||+..+...+..+++.+|+++
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 90 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 90 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence 4568999999999999999999999888777777776554 456677888889999999999999988999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+....... +.|+++|+||+|+... +....+++..++...+ ++++++||++|.|+
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi 164 (206)
T 2bov_A 91 CVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV 164 (206)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTCS---CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEEECTTTCTTH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEeccCcccc--ccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Confidence 9999999999999999988887765432 6799999999999764 4566777888887776 79999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|.+.+..+
T Consensus 165 ~~l~~~l~~~i~~~ 178 (206)
T 2bov_A 165 DKVFFDLMREIRAR 178 (206)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988764
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.6e-33 Score=190.90 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=143.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+||+||+..+...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 94 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 94 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence 4569999999999999999999999888777667665544 455667778889999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++++++.+..|+..+....... +.|+++|+||+|+... +....+++..++...+ ++++++||+++.|+
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 168 (187)
T 2a9k_A 95 CVFSITEMESFAATADFREQILRVKEDE---NVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN-VNYVETSAKTRANV 168 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCT---TCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcCCC---CCCEEEEEECcccccc--CccCHHHHHHHHHHcC-CeEEEeCCCCCCCH
Confidence 9999999999999999988888766532 6799999999999754 4466777888887776 79999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 029929 166 EAAFECIAKNALKNE 180 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~ 180 (185)
++++++|.+.+..++
T Consensus 169 ~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 169 DKVFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 52
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=2.4e-33 Score=186.82 Aligned_cols=165 Identities=24% Similarity=0.349 Sum_probs=119.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|.+|+|||||++++.+..... ..++.+.+. .....+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccC-CCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 4899999999999999999998766442 233444333 45567788889999999999999999999999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++++++.+..|+..+..... ..+.|+++|+||+|+.+. +....++...++...+ ++++++||++|.|+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~---~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 80 YSVTDKGSFEKASELRVQLRRARQ---TDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-CKFIETSAALHHNVQA 153 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHCC------CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT-CEEEECBGGGTBSHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcC---CCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC-CcEEEeccCCCCCHHH
Confidence 999999999999999888775432 237899999999999865 5667777788877776 8999999999999999
Q ss_pred HHHHHHHHHhhcC
Q 029929 168 AFECIAKNALKNE 180 (185)
Q Consensus 168 ~~~~i~~~~~~~~ 180 (185)
++++|.+.+..++
T Consensus 154 l~~~l~~~~~~~r 166 (166)
T 3q72_A 154 LFEGVVRQIRLRR 166 (166)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999987653
No 53
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.6e-33 Score=188.99 Aligned_cols=167 Identities=26% Similarity=0.474 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 94 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL 94 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence 3569999999999999999999999988777777776554 455667777889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+.... .+....++...++...+..++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 95 ICFSVVNPASFQNVKEEWVPELKEYAP-----NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 999999999999986 68888776532 67999999999997642 135667788888888774599
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhh
Q 029929 155 FETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++||++|.|+++++++|.+.+..
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAILT 193 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998763
No 54
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=5.2e-33 Score=191.04 Aligned_cols=165 Identities=32% Similarity=0.588 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcE-----------------------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRL----------------------------- 56 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 56 (185)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 456999999999999999999999998888888888878777777766544
Q ss_pred --------EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 57 --------FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 57 --------~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
..+.+|||||++.+...+..+++.+|++++|+|++++.+++.+..|+..+.... +.|+++|+||+|
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~------~~piilv~NK~D 158 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS------NYIIILVANKID 158 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS------CCEEEEEEECTT
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC------CCcEEEEEECCC
Confidence 889999999999999999999999999999999999999999888888887653 369999999999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
... +....+++..++...+ ++++++||++|.|+++++++|.+.+.++.
T Consensus 159 -~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~ 206 (208)
T 3clv_A 159 -KNK--FQVDILEVQKYAQDNN-LLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206 (208)
T ss_dssp -CC---CCSCHHHHHHHHHHTT-CEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred -ccc--ccCCHHHHHHHHHHcC-CcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence 322 4566788888888776 79999999999999999999999988653
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=2e-33 Score=187.14 Aligned_cols=164 Identities=32% Similarity=0.527 Sum_probs=140.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|++|+|||||++++.+..+...+.++.+... ...+.+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999887776666665433 56677788888999999999999888888999999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++.+++.+..|+..+...... .+.|+++|+||+|+... ++...++...++...+ ++++++||++|.|+++
T Consensus 82 ~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 82 YSLVNQQSFQDIKPMRDQIIRVKRY---EKVPVILVGNKVDLESE--REVSSSEGRALAEEWG-CPFMETSAKSKTMVDE 155 (167)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHTTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SCEEEECTTCHHHHHH
T ss_pred EeCCCHHHHHHHHHHHHHHHHhcCC---CCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC-CCEEEecCCCCcCHHH
Confidence 9999999999998888888776543 26799999999999754 4556677777777776 8999999999999999
Q ss_pred HHHHHHHHHhh
Q 029929 168 AFECIAKNALK 178 (185)
Q Consensus 168 ~~~~i~~~~~~ 178 (185)
++++|.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999988754
No 56
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=6.7e-33 Score=191.76 Aligned_cols=166 Identities=39% Similarity=0.700 Sum_probs=144.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|++|+|||||+++|++..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999999888888888888888888888888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+..... .+.|+++|+||+|+.. +....++...++...+ ++++++||+++.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 169 (213)
T 3cph_A 98 LVYDVTDERTFTNIKQWFKTVNEHAN----DEAQLLLVGNKSDMET---RVVTADQGEALAKELG-IPFIESSAKNDDNV 169 (213)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHTT----TCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT-CCEEECBTTTTBSS
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcC----CCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999999889888876643 2679999999999943 4456677777777776 79999999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
++++++|.+.+.++
T Consensus 170 ~~l~~~l~~~~~~~ 183 (213)
T 3cph_A 170 NEIFFTLAKLIQEK 183 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 57
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=4.9e-34 Score=198.15 Aligned_cols=168 Identities=43% Similarity=0.711 Sum_probs=142.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc----------EEEEEEecCCChhhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR----------LFTLQIWDTAGQERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~ 75 (185)
.+.++|+|+|.+|+|||||+++|++..+...+.++.+.++....+.+.+. .+.+.+|||||++.+...+.
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 102 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT 102 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence 45699999999999999999999998887777777777777777777665 78899999999999999999
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
.+++.+|++|+|+|++++.+++.+..|+..+.... ...+.|+++|+||+|+... +....+++..++...+ ++++
T Consensus 103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~---~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~ 176 (217)
T 2f7s_A 103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANA---YCENPDIVLIGNKADLPDQ--REVNERQARELADKYG-IPYF 176 (217)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCC---TTTCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CCEE
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc---CcCCCCEEEEEECCccccc--cccCHHHHHHHHHHCC-CcEE
Confidence 99999999999999999999998888777654322 1247899999999999754 4556777888887776 8999
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhc
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
++||+++.|+++++++|.+.+.++
T Consensus 177 ~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 177 ETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp EEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999988764
No 58
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=1e-32 Score=187.33 Aligned_cols=165 Identities=33% Similarity=0.571 Sum_probs=139.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|++|+|||||+++|.+..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 469999999999999999999999887776666664 4445666778888899999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+...... .+.|+++|+||+|+.. .....+....++...+ ++++++||++|.|++
T Consensus 82 v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~gi~ 154 (189)
T 4dsu_A 82 VFAINNTKSFEDIHHYREQIKRVKDS---EDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG-IPFIETSAKTRQGVD 154 (189)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTTC---SCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT-CCEEECCTTTCTTHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCC---CCCcEEEEEECccCcc---cccCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence 99999999999999998888776443 3679999999999974 4456677778877777 899999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
+++++|.+.+...
T Consensus 155 ~l~~~l~~~~~~~ 167 (189)
T 4dsu_A 155 DAFYTLVREIRKH 167 (189)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 59
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=190.25 Aligned_cols=167 Identities=24% Similarity=0.417 Sum_probs=138.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++++..+...+.++.+..+ .....+++..+.+.+|||||++.+... ..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i 96 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL 96 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence 4569999999999999999999999988877778877665 455667888899999999999887764 56889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee-ccCCC
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA-KEGFN 164 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~ 164 (185)
+|||++++++++.+..|+..+...... ...+.|+++|+||+|+... +....+++..++...+ ++++++|| ++|.|
T Consensus 97 lv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 97 VVYSVDSRQSFDSSSSYLELLALHAKE-TQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG-CLFFEVSACLDFEH 172 (187)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHHH-HCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT-CEEEECCSSSCSHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC-CcEEEEeecCcccc
Confidence 999999999999999999888766421 0126799999999999654 5567778888888877 79999999 89999
Q ss_pred HHHHHHHHHHHHhh
Q 029929 165 VEAAFECIAKNALK 178 (185)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (185)
+++++++|.+.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998764
No 60
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=3.2e-33 Score=189.42 Aligned_cols=168 Identities=21% Similarity=0.443 Sum_probs=141.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|++|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 82 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 82 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence 45679999999999999999999999988777777776655 34566778889999999999999998899999999999
Q ss_pred EEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC----------CceeecHHHHHHHHHhcCCCc
Q 029929 85 VLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG----------NSRVVSEKKAKAWCASKGNIP 153 (185)
Q Consensus 85 i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~----------~~~~~~~~~~~~~~~~~~~~~ 153 (185)
|+|+|++++++++.+ ..|+..+..... +.|+++|+||+|+... ..+.+..++...++...+..+
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (184)
T 1m7b_A 83 LICFDISRPETLDSVLKKWKGEIQEFCP-----NTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAAT 157 (184)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHCT-----TCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHCC-----CCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcE
Confidence 999999999999998 678887766532 6799999999999742 124566778888888777679
Q ss_pred EEEeeec-cCCCHHHHHHHHHHHHhh
Q 029929 154 YFETSAK-EGFNVEAAFECIAKNALK 178 (185)
Q Consensus 154 ~~~~s~~-~~~~i~~~~~~i~~~~~~ 178 (185)
++++||+ ++.|+++++++|.+.+.+
T Consensus 158 ~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 158 YIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 9999999 689999999999998875
No 61
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=5.6e-33 Score=188.18 Aligned_cols=170 Identities=25% Similarity=0.481 Sum_probs=142.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||||++++.+..+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999888777667765444 4556678888999999999999999999999999999999
Q ss_pred EEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcEE
Q 029929 87 VYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 87 v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
|+|++++.+++.+. .|+..+..... +.|+++|+||+|+.... .+....++...++...+..+++
T Consensus 83 v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 157 (186)
T 1mh1_A 83 CFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 157 (186)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHST-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEE
T ss_pred EEECCChhhHHHHHHHHHHHHHHhCC-----CCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEE
Confidence 99999999999886 68777766532 67999999999997542 1345667777788777745999
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
++||++|.|+++++++|.+.+.+....
T Consensus 158 ~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (186)
T 1mh1_A 158 ECSALTQRGLKTVFDEAIRAVLCPPPV 184 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHSCCCC-
T ss_pred EecCCCccCHHHHHHHHHHHHhccccc
Confidence 999999999999999999999876543
No 62
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=191.19 Aligned_cols=170 Identities=27% Similarity=0.448 Sum_probs=136.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 96 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL 96 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence 4579999999999999999999998887766677775444 456677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+.... .+....++...++...+..++
T Consensus 97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 97 LCFSVVSPSSFQNVSEKWVPEIRCHCP-----KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 999999999999986 68887776542 67999999999997531 245667778888887774599
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
+++||++|.|+++++++|.+.+...+.
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 198 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYSD 198 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCCCCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999886643
No 63
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.9e-33 Score=190.28 Aligned_cols=168 Identities=26% Similarity=0.458 Sum_probs=142.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+||+||+.. ...+..+++.+|+++
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii 103 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV 103 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence 4569999999999999999999999988777777776554 45566788888999999999887 667788889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC-C
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF-N 164 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~ 164 (185)
+|+|++++++++.+..|+..+...... .+.|+++|+||+|+... +....++...++...+ ++++++||++|. |
T Consensus 104 lv~D~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~g~~g 177 (196)
T 2atv_A 104 LVYDITDRGSFEEVLPLKNILDEIKKP---KNVTLILVGNKADLDHS--RQVSTEEGEKLATELA-CAFYECSACTGEGN 177 (196)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHTT---SCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-SEEEECCTTTCTTC
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhhCC---CCCcEEEEEECcccccc--cccCHHHHHHHHHHhC-CeEEEECCCcCCcC
Confidence 999999999999998888888765432 26799999999999764 4566777888887776 899999999999 9
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+.++++
T Consensus 178 i~~l~~~l~~~i~~~~~ 194 (196)
T 2atv_A 178 ITEIFYELCREVRRRRM 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 99999999999887643
No 64
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8.4e-33 Score=190.77 Aligned_cols=170 Identities=23% Similarity=0.341 Sum_probs=133.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC 83 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 83 (185)
...++|+++|.+|+|||||++++.+.... ....++++.+.....+.+++..+.+.+|||+|+.. +..+...+++.+|+
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 45699999999999999999999964431 22234466666667777888888999999999776 44556677889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
+|+|||++++++++.+..|+..+..... ..++|+++|+||+|+... +.+..++...++...+ ++++++||++|.
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~---~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~-~~~~e~SAk~g~ 188 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD-CKFIETSAAVQH 188 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGG---GTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC-CEEEEEeCCCCC
Confidence 9999999999999999888877654321 236799999999999753 4455666677776666 799999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 029929 164 NVEAAFECIAKNALKNEP 181 (185)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~ 181 (185)
|++++|++|++.+..++.
T Consensus 189 ~v~elf~~l~~~i~~~~~ 206 (211)
T 2g3y_A 189 NVKELFEGIVRQVRLRRD 206 (211)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 999999999999876543
No 65
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-32 Score=189.82 Aligned_cols=171 Identities=25% Similarity=0.479 Sum_probs=137.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEE-EEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEE
Confidence 34689999999999999999999999887777777765554 33667778889999999999999988899999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++++++.+ ..|...+..... +.|+++|+||+|+..... +....++...++...+..++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 102 MCFSVDSPDSLENIPEKWVPEVKHFCP-----NVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 99999999999988 667777766432 679999999999975421 23556677777777774589
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
+++||++|.|+++++++|.+.+..++..
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~~~~ 204 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQKRYG 204 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSCCCC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999876543
No 66
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.6e-32 Score=188.44 Aligned_cols=167 Identities=25% Similarity=0.512 Sum_probs=140.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 45689999999999999999999999888777777776664 34667788889999999999999999999999999999
Q ss_pred EEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++++++.+ ..|...+..... +.|+++|+||+|+..... +....++...++...+..++
T Consensus 102 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 102 MCFSIDSPDSLENIPEKWTPEVKHFCP-----NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHST-----TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 99999999999988 667777765432 679999999999976421 34556777888887774589
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhh
Q 029929 155 FETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++||++|.|+++++++|.+.+.+
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998753
No 67
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.9e-32 Score=184.36 Aligned_cols=168 Identities=32% Similarity=0.533 Sum_probs=131.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ...+.+.+..+.+.+||+||++.+...+..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 3569999999999999999999999887766666665443 456667778889999999999999888999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|++++.+++.+..|+..+....... +.|+++|+||+|+.. +....+++..++...+ ++++++||+++.|+
T Consensus 98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~---~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi 170 (190)
T 3con_A 98 CVFAINNSKSFADINLYREQIKRVKDSD---DVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG-IPFIETSAKTRQGV 170 (190)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCC---CCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC-CeEEEEeCCCCCCH
Confidence 9999999999999988888887665422 679999999999976 3455677788887777 79999999999999
Q ss_pred HHHHHHHHHHHhhcCC
Q 029929 166 EAAFECIAKNALKNEP 181 (185)
Q Consensus 166 ~~~~~~i~~~~~~~~~ 181 (185)
++++++|.+.+...+.
T Consensus 171 ~~l~~~l~~~~~~~~~ 186 (190)
T 3con_A 171 EDAFYTLVREIRQYRM 186 (190)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887654
No 68
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=6.4e-33 Score=191.88 Aligned_cols=170 Identities=31% Similarity=0.548 Sum_probs=140.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999888777777776554 445667778889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc------eeecHHHHHHHHHhcCCCcEEEee
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS------RVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+..... ..+..++...++...+..+++++|
T Consensus 86 lv~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 86 LAFSLISKASYENVLKKWMPELRRFAP-----NVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 999999999999986 78888776542 679999999999976411 123567777888877745999999
Q ss_pred eccCCCHHHHHHHHHHHHhhcCC
Q 029929 159 AKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
|++|.|+++++++|.+.+...+.
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~~ 183 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPPR 183 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC--
T ss_pred CCCCCCHHHHHHHHHHHHhhhhh
Confidence 99999999999999999986653
No 69
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=8.8e-33 Score=191.51 Aligned_cols=170 Identities=33% Similarity=0.537 Sum_probs=122.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 110 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL 110 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence 3569999999999999999999998887766666665444 455677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+..... +.+..++...++...+..++
T Consensus 111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 111 LCFDVTSPNSFDNIFNRWYPEVNHFCK-----KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCS-----SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 999999999999986 68887766542 679999999999976421 24566777888887774599
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
+++||++|.|+++++++|.+.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC--
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999987654
No 70
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=6.7e-32 Score=179.43 Aligned_cols=163 Identities=32% Similarity=0.567 Sum_probs=138.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEE
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLV 87 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 87 (185)
.++|+++|.+|+|||||++++.+..+.....++.+... ...+...+..+.+.+||+||+..+...+..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 48999999999999999999999887766666665433 45566777888999999999998888888899999999999
Q ss_pred EECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 88 YDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
+|++++.+++.+..|+..+....... +.|+++|+||+|+.. +....+....++...+ ++++++||++|.|+++
T Consensus 82 ~d~~~~~~~~~~~~~~~~i~~~~~~~---~~p~iiv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 82 FAINNTKSFEDIHQYREQIKRVKDSD---DVPMVLVGNKSDLAA---RTVESRQAQDLARSYG-IPYIETSAKTRQGVED 154 (166)
T ss_dssp EETTCHHHHHHHHHHHHHHHHHHTCS---CCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT-CCEEEECTTTCTTHHH
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCC---CCcEEEEEEchhhhh---cccCHHHHHHHHHHcC-CeEEEecCCCCCCHHH
Confidence 99999999999988988887765432 679999999999976 3455677777777776 8999999999999999
Q ss_pred HHHHHHHHHhh
Q 029929 168 AFECIAKNALK 178 (185)
Q Consensus 168 ~~~~i~~~~~~ 178 (185)
++++|.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 71
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=5.1e-33 Score=193.14 Aligned_cols=170 Identities=31% Similarity=0.505 Sum_probs=141.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-cEEEEEEecCCChhhhcccccchhccCcE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-RLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
+...++|+|+|.+|+|||||+++|++..+...+.++.+...........+ ..+.+.+|||||++.+...+..++..+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45679999999999999999999998888777777777666666655444 34789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
+|+|+|++++.+++.+..|+..+...... +.|+++|+||+|+... +....+....++...+ ++++++||++|.
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~----~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-~~~~~~Sa~~g~ 160 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGN----EAPIVVCANKIDIKNR--QKISKKLVMEVLKGKN-YEYFEISAKTAH 160 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCS----SSCEEEEEECTTCC------CCHHHHHHHTTTCC-CEEEEEBTTTTB
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCC----CCCEEEEEECCCCccc--cccCHHHHHHHHHHcC-CcEEEEecCCCC
Confidence 99999999999999999998888776543 5799999999999764 4566677777766665 899999999999
Q ss_pred CHHHHHHHHHHHHhhcCC
Q 029929 164 NVEAAFECIAKNALKNEP 181 (185)
Q Consensus 164 ~i~~~~~~i~~~~~~~~~ 181 (185)
|+++++++|.+.+.....
T Consensus 161 gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 161 NFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTHHHHHHHHHHHCCTT
T ss_pred CHHHHHHHHHHHHhcccc
Confidence 999999999999987654
No 72
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=2.4e-33 Score=193.20 Aligned_cols=170 Identities=27% Similarity=0.489 Sum_probs=108.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEECCc--EEEEEEecCCChhhhcccccchhccCc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQFEDR--LFTLQIWDTAGQERFQSLGVAFYRGAD 82 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (185)
..++|+|+|.+|+|||||+++|.+. .+...+.++.+.++....+.+++. .+.+.+|||||++.+...+..+++.+|
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 4589999999999999999999988 666677777777777777888776 889999999999999999999999999
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC-CCceeecHHHHHHHHHhcCCCcEEEeeecc
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG-GNSRVVSEKKAKAWCASKGNIPYFETSAKE 161 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 161 (185)
++|+|+|++++.+++.+..|+..+....... ..+.|+++|+||+|+.. . +....+++..++...+ ++++++||++
T Consensus 99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~-~~~~piilv~nK~Dl~~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~ 174 (208)
T 2yc2_C 99 YAILVFDVSSMESFESCKAWFELLKSARPDR-ERPLRAVLVANKTDLPPQR--HQVRLDMAQDWATTNT-LDFFDVSANP 174 (208)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHCSCT-TSCCEEEEEEECC---------CCCHHHHHHHHHHTT-CEEEECCC--
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhhccc-ccCCcEEEEEECcccchhh--ccCCHHHHHHHHHHcC-CEEEEeccCC
Confidence 9999999999999999999999887765410 12679999999999976 3 4566778888888777 8999999999
Q ss_pred -CCCHHHHHHHHHHHHhhcC
Q 029929 162 -GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 -~~~i~~~~~~i~~~~~~~~ 180 (185)
+.|+++++++|.+.+.++.
T Consensus 175 ~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 175 PGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp -----CHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHH
Confidence 9999999999999887543
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.1e-32 Score=184.32 Aligned_cols=168 Identities=26% Similarity=0.413 Sum_probs=137.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|.+|+|||||++++.+..+...+.++.+..+ ......++..+.+.+|||||+..+...+..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 458999999999999999999999887766667665444 3445667777899999999999888888889999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|++++++++.+..|+..+...... ..+.|+++|+||+|+... ++....+...++...+ ++++++||++|.|++
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~--~~~~pii~v~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~ 155 (172)
T 2erx_A 81 VYSITSRQSLEELKPIYEQICEIKGD--VESIPIMLVGNKCDESPS--REVQSSEAEALARTWK-CAFMETSAKLNHNVK 155 (172)
T ss_dssp EEETTCHHHHHTTHHHHHHHHHHHC-----CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-CEEEECBTTTTBSHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCC--CCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC-CeEEEecCCCCcCHH
Confidence 99999999999888888877665431 136799999999999754 3455666677777666 799999999999999
Q ss_pred HHHHHHHHHHhhcC
Q 029929 167 AAFECIAKNALKNE 180 (185)
Q Consensus 167 ~~~~~i~~~~~~~~ 180 (185)
+++++|.+.+..++
T Consensus 156 ~l~~~l~~~~~~~~ 169 (172)
T 2erx_A 156 ELFQELLNLEKRRT 169 (172)
T ss_dssp HHHHHHHHTCCSSC
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998776543
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=201.55 Aligned_cols=168 Identities=40% Similarity=0.720 Sum_probs=136.3
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus 30 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 109 (199)
T 3l0i_B 30 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI 109 (199)
T ss_dssp CSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEE
Confidence 35679999999999999999999999888877788888888888888888889999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
|+|+|++++++++.+..|+..+..... .+.|+++|+||+|+... +....++...++...+ ++++++||+++.|
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~vSA~~g~g 182 (199)
T 3l0i_B 110 IVVYDVTDQESFNNVKQWLQEIDRYAS----ENVNKLLVGNKCDLTTK--KVVDYTTAKEFADSLG-IPFLETSAKNATN 182 (199)
T ss_dssp EECC-CCCSHHHHHHHHHHHHHHSCC-----CCSEEEEC-CCSSCC----CCCCSCC-CHHHHTTT-CCBCCCCC---HH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcc----CCCCEEEEEECccCCcc--ccCCHHHHHHHHHHcC-CeEEEEECCCCCC
Confidence 999999999999999888888754432 36799999999999765 3444455666667666 8999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029929 165 VEAAFECIAKNALKN 179 (185)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (185)
+++++++|.+.+..+
T Consensus 183 v~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 183 VEQSFMTMAAEIKKR 197 (199)
T ss_dssp HHHHHHHHTTTTTTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999877654
No 75
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.8e-32 Score=186.09 Aligned_cols=169 Identities=26% Similarity=0.429 Sum_probs=140.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
+...++|+++|.+|+|||||+++|.+..+...+.++.+..+ ......++..+.+.+|||||+..+...+..+++.+|++
T Consensus 5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY-RQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE-EEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce-eEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 34569999999999999999999999888776667766444 34456677788999999999999888888999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++++++.+..|+..+...... ..+.|+++|+||+|+.. +....++...++...+ ++++++||++|.|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g 157 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGS--VEDIPVMLVGNKCDETQ---REVDTREAQAVAQEWK-CAFMETSAKMNYN 157 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSC--GGGSCEEEEEECTTCSS---CSSCHHHHHHHHHHHT-CEEEECBTTTTBS
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEEECccCCc---cccCHHHHHHHHHHhC-CeEEEEecCCCCC
Confidence 9999999999999988887776655322 12679999999999975 3455667777777766 7999999999999
Q ss_pred HHHHHHHHHHHHhhcC
Q 029929 165 VEAAFECIAKNALKNE 180 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~ 180 (185)
+++++++|.+.+..++
T Consensus 158 i~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 158 VKELFQELLTLETRRN 173 (199)
T ss_dssp HHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHhhhh
Confidence 9999999999887654
No 76
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=3.2e-32 Score=187.39 Aligned_cols=165 Identities=25% Similarity=0.464 Sum_probs=136.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++++..+...+.++.+ +.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4569999999999999999999999888777667665 344556667788889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++.+++.+. .|+..+.... .+.|+++|+||+|+..... +....++...++...+..++
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 107 ICFSLVSPASFENVRAKWYPEVRHHC-----PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHC-----SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhC-----CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 999999999999986 6877777654 2679999999999976421 23566778888888876679
Q ss_pred EEeeeccCCCHHHHHHHHHHHH
Q 029929 155 FETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
+++||++|.|+++++++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 77
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=100.00 E-value=7.3e-33 Score=192.79 Aligned_cols=167 Identities=28% Similarity=0.610 Sum_probs=142.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
....++|+++|.+|+|||||+++++...+...+.++.+.+.......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 91 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA 91 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence 35679999999999999999999777666667778888888888888888899999999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCC
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFN 164 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 164 (185)
++|+|++++.+++.+..|+..+..... +.|+++|+||+|+.+.... .+...++...+ ++++++||++|.|
T Consensus 92 i~v~d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~-~~~~~~Sa~~~~g 161 (221)
T 3gj0_A 92 IIMFDVTSRVTYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN-LQYYDISAKSNYN 161 (221)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHST-----TCCEEEEEECTTSSSCSSC----GGGCCHHHHHT-CEEEECBGGGTBT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCC-----CCCEEEEEECCcccccccc----HHHHHHHHHcC-CEEEEEeCCCCCC
Confidence 999999999999999999998887643 6799999999999764221 13334445555 7999999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 029929 165 VEAAFECIAKNALKNEP 181 (185)
Q Consensus 165 i~~~~~~i~~~~~~~~~ 181 (185)
+++++++|.+.+.....
T Consensus 162 i~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 162 FEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TTHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999987653
No 78
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=8e-33 Score=186.90 Aligned_cols=167 Identities=29% Similarity=0.509 Sum_probs=124.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+. ..+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 84 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI 84 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence 45689999999999999999999998877666666654332 22344556678889999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc--------eeecHHHHHHHHHhcCCCcEEE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS--------RVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+|+|++++++++.+. .|+..+..... +.|+++|+||+|+.+... .....++...++...+..++++
T Consensus 85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 85 LAFSLISKASYENVSKKWIPELKHYAP-----GVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhCC-----CCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 999999999999986 68887776532 679999999999976421 1235677778887777459999
Q ss_pred eeeccCCCHHHHHHHHHHHHhh
Q 029929 157 TSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+||++|.|+++++++|.+.+..
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~~ 181 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVLQ 181 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999998753
No 79
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=100.00 E-value=1.2e-32 Score=188.26 Aligned_cols=168 Identities=21% Similarity=0.301 Sum_probs=130.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-----------cCcceeeeEEEEE-EECCcEEEEEEecCCChhhhcc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-----------KATIGADFLTKEV-QFEDRLFTLQIWDTAGQERFQS 72 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~~ 72 (185)
+...++|+++|.+|+|||||++.+.+.. ...+ .++.+.++....+ .+++..+.+.+|||||++.+..
T Consensus 11 ~~~~~ki~vvG~~~~GKssL~~~l~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~ 89 (198)
T 3t1o_A 11 REINFKIVYYGPGLSGKTTNLKWIYSKV-PEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA 89 (198)
T ss_dssp TEEEEEEEEECSTTSSHHHHHHHHHHTS-CGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred cccccEEEEECCCCCCHHHHHHHHHhhc-cccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence 3567999999999999999997776544 3232 2344434333333 4566778999999999999999
Q ss_pred cccchhccCcEEEEEEECC------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH
Q 029929 73 LGVAFYRGADCCVLVYDVN------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC 146 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~ 146 (185)
.+..+++.+|++|+|+|++ +.++++.+..|+..+. ....+.|+++|+||+|+.+. ...+++..++
T Consensus 90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-----~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~ 160 (198)
T 3t1o_A 90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-----LTLDDVPIVIQVNKRDLPDA----LPVEMVRAVV 160 (198)
T ss_dssp HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-----CCTTSSCEEEEEECTTSTTC----CCHHHHHHHH
T ss_pred HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-----cccCCCCEEEEEEchhcccc----cCHHHHHHHH
Confidence 9999999999999999999 4556666666666542 22347899999999999764 6677888888
Q ss_pred HhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929 147 ASKGNIPYFETSAKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 147 ~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
...+..+++++||++|.|+++++++|.+.+.++.++
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~ 196 (198)
T 3t1o_A 161 DPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG 196 (198)
T ss_dssp CTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred HhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence 777733999999999999999999999999876543
No 80
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=100.00 E-value=4.9e-32 Score=185.52 Aligned_cols=174 Identities=19% Similarity=0.305 Sum_probs=128.7
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
....++|+|+|.+|+|||||+++|++..+.. .+.++.+.... .+ ....+.+.+|||||++.+...+..+++.+|+
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 89 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDA 89 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCE
Confidence 3567899999999999999999999998877 66777764333 22 3455789999999999999999999999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCC----CCCCCCcEEEEEeCCCCCCCCceeecHHHHH-HHHHhcCCCcEEEee
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASP----SDPENFPFVVLGNKTDVDGGNSRVVSEKKAK-AWCASKGNIPYFETS 158 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s 158 (185)
+|+|+|++++++++.+..|+..+...... ....+.|+++|+||+|+..........+... ........++++++|
T Consensus 90 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 169 (199)
T 4bas_A 90 VIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASN 169 (199)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECB
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEee
Confidence 99999999999999998888877654111 0112679999999999986522111111111 111122347899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcCCc
Q 029929 159 AKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
|++|.|+++++++|.+.+..+...
T Consensus 170 a~~g~gv~~l~~~l~~~~~~~~~~ 193 (199)
T 4bas_A 170 GLKGTGVHEGFSWLQETASRQSGK 193 (199)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC--
T ss_pred CCCccCHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999876543
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=4.8e-31 Score=179.90 Aligned_cols=168 Identities=23% Similarity=0.345 Sum_probs=130.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-hcccccchhccCcE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-FQSLGVAFYRGADC 83 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~d~ 83 (185)
...++|+++|.+|+|||||++++.+.... ....++++.+.....+.+++..+.+.+|||+|+.. .......+++.+|+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 35689999999999999999999964321 22234456666667778888888999999999765 45566778889999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCC
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGF 163 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 163 (185)
+++|||++++++++.+..|+..+..... ..+.|+++|+||+|+... +....++...++...+ ++++++||++|.
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~---~~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~~~-~~~~e~SA~~g~ 157 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQ---TEDIPIILVGNKSDLVRX--REVSVSEGRAXAVVFD-XKFIETSAAVQH 157 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTT---TSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCeEEEEEechhhhcc--ccccHHHHHHHHHHhC-CceEEeccccCC
Confidence 9999999999999999888887765432 236799999999999753 4455666666666665 799999999999
Q ss_pred CHHHHHHHHHHHHhhc
Q 029929 164 NVEAAFECIAKNALKN 179 (185)
Q Consensus 164 ~i~~~~~~i~~~~~~~ 179 (185)
|++++|++|.+.+..+
T Consensus 158 ~v~~lf~~l~~~~~~~ 173 (192)
T 2cjw_A 158 NVKELFEGIVRQVRLR 173 (192)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999988654
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=100.00 E-value=1.3e-31 Score=179.09 Aligned_cols=163 Identities=20% Similarity=0.310 Sum_probs=125.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+.. ..++.+.. ...+.+. ...+.+|||||++.+...+..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN--VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE--EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc--eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 346899999999999999999999887653 45555433 3344444 478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++....++..+..... ..+.|+++|+||+|+.+.. ...++...... ...++++++||++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (171)
T 1upt_A 80 YVVDSCDRDRIGISKSELVAMLEEEE---LRKAILVVFANKQDMEQAM----TSSEMANSLGLPALKDRKWQIFKTSATK 152 (171)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTCC----CHHHHHHHHTGGGCTTSCEEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchh---hCCCEEEEEEECCCCcCCC----CHHHHHHHhCchhccCCceEEEECcCCC
Confidence 99999999999988877776654321 2367999999999997642 12222222111 1235899999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 029929 162 GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (185)
|.|+++++++|.+.+.+++
T Consensus 153 ~~gi~~l~~~l~~~i~~~q 171 (171)
T 1upt_A 153 GTGLDEAMEWLVETLKSRQ 171 (171)
T ss_dssp CTTHHHHHHHHHHHHHTCC
T ss_pred CcCHHHHHHHHHHHHhhcC
Confidence 9999999999999987653
No 83
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=100.00 E-value=2.3e-32 Score=185.84 Aligned_cols=163 Identities=23% Similarity=0.381 Sum_probs=127.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+|+|.+|+|||||+++|.+..+...+.++.+.++.. +. ...+.+.+|||||++.+...+..+++.+|++|
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV 95 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence 356999999999999999999999988877777777766543 22 34578999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.... ..+++...... ...++++++||++
T Consensus 96 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 168 (188)
T 1zd9_A 96 YMVDAADQEKIEASKNELHNLLDKPQ---LQGIPVLVLGNKRDLPGAL----DEKELIEKMNLSAIQDREICCYSISCKE 168 (188)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCCEEEEEECCCCccCC----CHHHHHHHhChhhhccCCeeEEEEECCC
Confidence 99999999999998888877654321 2377999999999997642 12222221111 1235789999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 029929 162 GFNVEAAFECIAKNALKN 179 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (185)
|.|+++++++|.+.+..+
T Consensus 169 g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 169 KDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CTTHHHHHHHHHHTCC--
T ss_pred CCCHHHHHHHHHHHHHhh
Confidence 999999999999877654
No 84
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.98 E-value=1.5e-31 Score=181.41 Aligned_cols=162 Identities=18% Similarity=0.311 Sum_probs=127.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+.. ...+.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456999999999999999999999887 55566666533 3344444 478999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.... ..++..+.... ...++++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 91 WVVDSADRQRMQDCQRELQSLLVEE---RLAGATLLIFANKQDLPGAL----SCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh---hcCCCcEEEEEeCccCCCCC----CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 9999999999999888887776432 12367999999999997642 22333332211 1236899999999
Q ss_pred CCCHHHHHHHHHHHHhhc
Q 029929 162 GFNVEAAFECIAKNALKN 179 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~ 179 (185)
|.|+++++++|.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999998765
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.7e-31 Score=181.29 Aligned_cols=164 Identities=18% Similarity=0.261 Sum_probs=123.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+. .+.++.+... ..+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 88 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 88 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 45699999999999999999999987765 4555555333 3334443 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+... ...+++.+.... ...++++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 89 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTSGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhchh---hCCCeEEEEEECCCCcCC----CCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 99999999999999888887765321 136799999999999753 223333333321 1236899999999
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 029929 162 GFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~ 181 (185)
|.|+++++++|.+.+....+
T Consensus 162 g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp TBTHHHHHHHHHHHHCC---
T ss_pred CcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999876543
No 86
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.6e-32 Score=179.20 Aligned_cols=159 Identities=16% Similarity=0.303 Sum_probs=119.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEE
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVY 88 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~ 88 (185)
++|+++|++|+|||||++++.+..+.. +.|+.+.. ...+.. ..+.+.+|||||++.+...+..+++.+|++++|+
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999877653 45555532 333333 4478999999999999888888999999999999
Q ss_pred ECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccCCC
Q 029929 89 DVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEGFN 164 (185)
Q Consensus 89 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~~~ 164 (185)
|++++++++.+..|+..+.... ...+.|+++|+||+|+.+.. ..++....... ...++++++||++|.|
T Consensus 76 d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 148 (164)
T 1r8s_A 76 DSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSGDG 148 (164)
T ss_dssp ETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTTTBT
T ss_pred ECCCHHHHHHHHHHHHHHHhch---hhcCCeEEEEEECcCCcCCC----CHHHHHHHhCcccccCccEEEEEcccCCCcC
Confidence 9999999998888877765432 22367999999999997642 12222221111 1235799999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029929 165 VEAAFECIAKNALKN 179 (185)
Q Consensus 165 i~~~~~~i~~~~~~~ 179 (185)
+++++++|.+.+..+
T Consensus 149 i~~l~~~l~~~i~~~ 163 (164)
T 1r8s_A 149 LYEGLDWLSNQLRNQ 163 (164)
T ss_dssp HHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987654
No 87
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=4.5e-31 Score=180.85 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=118.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+. .+.++.+.. ...+.+++ ..+.+|||||++.++..+..+++.+|+++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 97 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV 97 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence 34589999999999999999999987754 344555443 33445555 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----------------
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---------------- 149 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------------- 149 (185)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+.. ....+++..+....
T Consensus 98 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 98 FLVDCADHERLLESKEELDSLMTDET---IANVPILILGNKIDRPE----AISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTSCEEEEEECTTSTT----CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred EEEECCCHHHHHHHHHHHHHHHhCcc---cCCCcEEEEEECCCccc----cCCHHHHHHHhCcccccccccccccccccC
Confidence 99999999999999888887764321 23679999999999975 24455666655421
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
..++++++||++|.|+++++++|.+.
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 23689999999999999999999864
No 88
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.97 E-value=1.3e-31 Score=181.05 Aligned_cols=163 Identities=22% Similarity=0.332 Sum_probs=121.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+. .+.++.+.. ...+.++ .+.+.+|||||++.+...+..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~--~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFN--IKSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEE--EEEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeE--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 45699999999999999999999987543 334555432 3344444 478899999999999888889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+.. ..+++...... ...++++++||++
T Consensus 89 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 89 YVIDSADRKRFEETGQELTELLEEE---KLSCVPVLIFANKQDLLTAA----PASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp EEEETTCGGGHHHHHHHHHHHTTCG---GGTTCCEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEECcCHHHHHHHHHHHHHHHhCh---hhcCCCEEEEEECcCcccCC----CHHHHHHHhCchhccCCceEEEEccCCC
Confidence 9999999999998888777664321 22367999999999997642 12233222111 1236799999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 029929 162 GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (185)
|.|+++++++|.+.+.+++
T Consensus 162 g~gi~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNAKK 180 (181)
T ss_dssp CTTHHHHHHHHHHTC----
T ss_pred CCCHHHHHHHHHHHHHhcc
Confidence 9999999999998876543
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.5e-30 Score=177.20 Aligned_cols=158 Identities=21% Similarity=0.308 Sum_probs=123.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.+.++|+++|++|+|||||++++.+..+. .+.++.+.. ...+.+++ +.+.+|||||++.+...+..+++.+|+++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 95 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIV 95 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 34589999999999999999999988765 344555443 44555555 78899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh-----------cCCCcE
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS-----------KGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~-----------~~~~~~ 154 (185)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+... ...+++.+.... ...+++
T Consensus 96 ~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 96 FLVDAADPERFDEARVELDALFNIAE---LKDVPFVILGNKIDAPNA----VSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCGG---GTTCCEEEEEECTTSTTC----CCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred EEEECCChHHHHHHHHHHHHHHcchh---hcCCCEEEEEECCCCcCC----CCHHHHHHHhCCccccccccccccceEEE
Confidence 99999999999999888887764322 236799999999999752 344555554432 123679
Q ss_pred EEeeeccCCCHHHHHHHHHHH
Q 029929 155 FETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+++||++|.|+++++++|.+.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999764
No 90
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=2.6e-30 Score=175.93 Aligned_cols=164 Identities=18% Similarity=0.287 Sum_probs=126.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC-CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK-FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCC 84 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 84 (185)
...++|+|+|.+|+|||||+++|.+.. +...+.++.+ .....+.+++ ..+.+|||||++.+...+..+++.+|++
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAI 94 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 456999999999999999999999877 4555555555 3344444443 6889999999999999999999999999
Q ss_pred EEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--hc--CCCcEEEeeec
Q 029929 85 VLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA--SK--GNIPYFETSAK 160 (185)
Q Consensus 85 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~s~~ 160 (185)
++|+|++++++++.+..|+..+...... ...+.|+++|+||+|+... ...+++.+... .. ..++++++||+
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 95 IFVIDSSDRLRMVVAKEELDTLLNHPDI-KHRRIPILFFANKMDLRDA----VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHSTTT-TTSCCCEEEEEECTTSTTC----CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhh-ccCCCeEEEEEeCcCcccC----CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 9999999999999988888877654321 0136799999999999753 23444544442 11 23689999999
Q ss_pred cCCCHHHHHHHHHHHHhh
Q 029929 161 EGFNVEAAFECIAKNALK 178 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~~~ 178 (185)
+|.|+++++++|.+.+..
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987643
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.4e-31 Score=181.35 Aligned_cols=161 Identities=16% Similarity=0.303 Sum_probs=118.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||+++++...+. .+.++.+ .....+.. ..+.+.+|||||++.+...+..+++.+|+++
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~--~~~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETT--EEEEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCc--eeEEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 45699999999999999999999987755 3344444 33333433 3478999999999999988889999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.... ..+++...... ...++++++||++
T Consensus 102 lv~D~~~~~s~~~~~~~l~~~~~~~---~~~~~piilv~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 102 FVVDSNDRERVQESADELQKMLQED---ELRDAVLLVFANKQDMPNAM----PVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc---ccCCCeEEEEEECCCCCCCC----CHHHHHHHhCcccccCCceEEEECcCCC
Confidence 9999999999999888887765432 12367999999999997641 12222221111 1125799999999
Q ss_pred CCCHHHHHHHHHHHHhh
Q 029929 162 GFNVEAAFECIAKNALK 178 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~ 178 (185)
|.|+++++++|.+.+.+
T Consensus 175 g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELSK 191 (192)
T ss_dssp TBTHHHHHHHHHHHTTT
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999988754
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.97 E-value=2.3e-31 Score=179.87 Aligned_cols=158 Identities=19% Similarity=0.285 Sum_probs=121.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||+++|.+..+ ....++.+... ..+.+++ ..+.+|||||++.+...+..+++.+|+++
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 93 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVI 93 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4569999999999999999999998887 44455555443 3334443 78999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+..... ..+.|+++|+||+|+... ...+++...... ...++++++||++
T Consensus 94 ~v~D~~~~~s~~~~~~~~~~~~~~~~---~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 166 (181)
T 2h17_A 94 VVVDSTDRERISVTREELYKMLAHED---LRKAGLLIFANKQDVKEC----MTVAEISQFLKLTSIKDHQWHIQACCALT 166 (181)
T ss_dssp EEEETTCTTTHHHHHHHHHHHHTCGG---GTTCEEEEEEECTTSTTC----CCHHHHHHHTTGGGCCSSCEEEEECBTTT
T ss_pred EEEECCCHHHHHHHHHHHHHHHhChh---hCCCeEEEEEECCCcccC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 99999999999998888877764321 236799999999999763 223333333211 1235899999999
Q ss_pred CCCHHHHHHHHHHH
Q 029929 162 GFNVEAAFECIAKN 175 (185)
Q Consensus 162 ~~~i~~~~~~i~~~ 175 (185)
|.|+++++++|.+.
T Consensus 167 g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 167 GEGLCQGLEWMMSR 180 (181)
T ss_dssp TBTHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHhh
Confidence 99999999999764
No 93
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=2.1e-29 Score=172.63 Aligned_cols=166 Identities=37% Similarity=0.684 Sum_probs=140.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+++|++|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|++.+......+++.+|++++
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~ 83 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL 83 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence 46899999999999999999999998887778888888888888889888899999999999888888888899999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHH
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVE 166 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 166 (185)
|+|+.+..+++.+..|+..+..... .+.|+++++||+|+.+. +....++++.++...+ +.++++||+++.|++
T Consensus 84 v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~~d~Sal~~~~i~ 156 (199)
T 2f9l_A 84 VYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNN-LSFIETSALDSTNVE 156 (199)
T ss_dssp EEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTHH
T ss_pred EEECcCHHHHHHHHHHHHHHHHhcC----CCCeEEEEEECcccccc--cCcCHHHHHHHHHHcC-CeEEEEeCCCCCCHH
Confidence 9999999999888888877654422 26799999999999754 4455667777877766 889999999999999
Q ss_pred HHHHHHHHHHhhc
Q 029929 167 AAFECIAKNALKN 179 (185)
Q Consensus 167 ~~~~~i~~~~~~~ 179 (185)
+++++|.+.+...
T Consensus 157 ~l~~~l~~~~~~~ 169 (199)
T 2f9l_A 157 EAFKNILTEIYRI 169 (199)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988653
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.97 E-value=2.1e-31 Score=180.09 Aligned_cols=163 Identities=18% Similarity=0.316 Sum_probs=122.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|++|+|||||++++.+..+ ..+.++.+.. ...+.++ ...+.+|||||+..+...+..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 4579999999999999999999997765 3445555533 3334444 378999999999999989999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----CCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK----GNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~----~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..|+..+.... ...+.|+++|+||+|+.+. ...+++....... ..++++++||++
T Consensus 91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~----~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 91 FVVDSTDKDRMSTASKELHLMLQEE---ELQDAALLVFANKQDQPGA----LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEETTCTTTHHHHHHHHHHHTTSS---TTSSCEEEEEEECTTSTTC----CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred EEEECCCHHHHHHHHHHHHHHHcCh---hhCCCeEEEEEECCCCCCC----CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999998888877765432 2337899999999999764 2233333332211 125799999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 029929 162 GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (185)
|.|+++++++|.+.+.+++
T Consensus 164 ~~gi~~l~~~l~~~~~~~q 182 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEEQ 182 (183)
T ss_dssp TBTHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcc
Confidence 9999999999999987653
No 95
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.97 E-value=4e-31 Score=179.76 Aligned_cols=163 Identities=16% Similarity=0.276 Sum_probs=124.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++....+.. +.++.+.. ...+.++ ...+.+|||||++.+...+..+++.+|+++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~--~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVN--LETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCC--EEEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceE--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 457999999999999999999998776543 44555433 3334443 478899999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH----hcCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA----SKGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~ 161 (185)
+|+|++++++++.+..++..+... ....+.|+++|+||+|+.... ..++...... ....++++++||++
T Consensus 95 ~v~d~~~~~s~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 95 YVVDSTDRDRMGVAKHELYALLDE---DELRKSLLLIFANKQDLPDAA----SEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp EEEETTCCTTHHHHHHHHHHHHTC---STTTTCEEEEEEECTTSTTCC----CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhh---hhcCCCeEEEEEECCCCcCCC----CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 999999999999887777766543 223478999999999997642 1222222111 11135799999999
Q ss_pred CCCHHHHHHHHHHHHhhcC
Q 029929 162 GFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~ 180 (185)
+.|+++++++|.+.+.++.
T Consensus 168 ~~gi~~l~~~l~~~i~~~~ 186 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQG 186 (189)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHHhcc
Confidence 9999999999999997764
No 96
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=1.7e-29 Score=185.48 Aligned_cols=168 Identities=24% Similarity=0.470 Sum_probs=140.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++++..+...+.++.+..+ ...+.+++..+.+.+|||||++.+......+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3458999999999999999999999888777777765444 555677888889999999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC----------ceeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGN----------SRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++.+++.+. .|...+..... ++|+++|+||+|+.... .+....++...++...+..++
T Consensus 232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~-----~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 232 ICFSLVSPASFHHVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEETTCHHHHHHHHHTHHHHHHHHCT-----TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhhCC-----CCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 999999999999886 67777766543 67999999999996531 145667788888888774599
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+++||++|.|+++++++|.+.+...
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred EEecCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999999988753
No 97
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.97 E-value=2e-30 Score=175.72 Aligned_cols=167 Identities=26% Similarity=0.411 Sum_probs=119.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC--CCCCCccCcceeeeEEEEEEE---CCcEEEEEEecCCChhhhcccccchhccCc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR--KFSNQYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQERFQSLGVAFYRGAD 82 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d 82 (185)
.++|+++|++|||||||++++.+. .+...+.++.+.++....+.+ .+..+.+.+|||+|++.+......+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 344455667766665554433 234678899999999999888888999999
Q ss_pred EEEEEEECCCh-hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec---HHHHHHHHHhcCCCc----E
Q 029929 83 CCVLVYDVNVM-KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS---EKKAKAWCASKGNIP----Y 154 (185)
Q Consensus 83 ~~i~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~---~~~~~~~~~~~~~~~----~ 154 (185)
++++|+|++++ .+++.+..|+..+.... ++.|+++|+||+|+... +... .+....++...+ ++ +
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~-----~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~ 153 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKARA-----SSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRG-FPAIRDY 153 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHHC-----TTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTT-SCEEEEE
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhhC-----CCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcC-Ccchhhe
Confidence 99999999997 57888888988876653 26799999999999753 2211 122333433334 55 8
Q ss_pred EEeeeccCC-CHHHHHHHHHHHHhhcCCc
Q 029929 155 FETSAKEGF-NVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 155 ~~~s~~~~~-~i~~~~~~i~~~~~~~~~~ 182 (185)
+++||+++. +++++++.|.+.+......
T Consensus 154 ~~~Sa~~~~~~~~~l~~~i~~~~~~~~~~ 182 (184)
T 2zej_A 154 HFVNATEESDALAKLRKTIINESLNFKIR 182 (184)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHCC---
T ss_pred EEEecccCchhHHHHHHHHHHHHhccccC
Confidence 999999997 9999999999988876543
No 98
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.97 E-value=1.4e-28 Score=167.62 Aligned_cols=164 Identities=38% Similarity=0.707 Sum_probs=141.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|+.|||||||++++.+..+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++.+++++
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 35689999999999999999999999888888889888888888888988888999999999888888888889999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
+|+|..+..+++.+..|+..+..... .+.|+++++||+|+.+. +....+.++.++...+ +.++++|++++.|+
T Consensus 107 ~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~i~~v~nK~Dl~~~--~~~~~~~a~~l~~~~~-~~~ld~Sald~~~v 179 (191)
T 1oix_A 107 LVYDIAKHLTYENVERWLKELRDHAD----SNIVIMLVGNKSDLRHL--RAVPTDEARAFAEKNG-LSFIETSALDSTNV 179 (191)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSC----TTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-CEEEECCTTTCTTH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhcC----CCCcEEEEEECcccccc--cccCHHHHHHHHHHcC-CEEEEEeCCCCCCH
Confidence 99999999999888778776654322 25699999999999753 3455667788877766 88999999999999
Q ss_pred HHHHHHHHHHH
Q 029929 166 EAAFECIAKNA 176 (185)
Q Consensus 166 ~~~~~~i~~~~ 176 (185)
++++++|.+.+
T Consensus 180 ~~l~~~l~~~i 190 (191)
T 1oix_A 180 EAAFQTILTEI 190 (191)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 99
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.97 E-value=2.6e-29 Score=169.03 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=122.3
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcE
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADC 83 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ 83 (185)
.....++|+++|.+|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||++.+...+..++..+|+
T Consensus 4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 345679999999999999999999999888776666666666555566665 467799999999999998899999999
Q ss_pred EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC--------CCcEE
Q 029929 84 CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG--------NIPYF 155 (185)
Q Consensus 84 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~--------~~~~~ 155 (185)
+++|+|++++....... .+..+. . .+.|+++|+||+|+.... .+.......... .++++
T Consensus 82 ~i~v~d~~~~~~~~~~~-~l~~~~---~----~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2lkc_A 82 VILVVAADDGVMPQTVE-AINHAK---A----ANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIFC 148 (178)
T ss_dssp EEEEEETTCCCCHHHHH-HHHHHG---G----GSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEEE
T ss_pred EEEEEECCCCCcHHHHH-HHHHHH---h----CCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccEE
Confidence 99999998843222221 112221 1 267999999999997631 222222222211 14799
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhcCCcc
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKNEPQE 183 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~~~~~ 183 (185)
++||++|.|+++++++|.+.+...+...
T Consensus 149 ~~Sa~~~~gv~~l~~~l~~~~~~~~~~~ 176 (178)
T 2lkc_A 149 KLSAKTKEGLDHLLEMILLVSEMEELKA 176 (178)
T ss_dssp ECCSSSSHHHHHHHHHHHHHHHHTTTTS
T ss_pred EEecCCCCCHHHHHHHHHHhhhhhcccc
Confidence 9999999999999999999988766544
No 100
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.97 E-value=4.9e-30 Score=175.42 Aligned_cols=164 Identities=16% Similarity=0.235 Sum_probs=118.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC-CcEEEEEEecCCChhhhcccc---cchhcc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQERFQSLG---VAFYRG 80 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~~~~~ 80 (185)
....+||+++|.+|+|||||++++.+.. ......+...........+. +..+.+.+|||||++.+.... ..+++.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 95 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKM-SPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG 95 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCC-CGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcC-CCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence 4567999999999999999999887653 32222222222222222232 566789999999999887776 789999
Q ss_pred CcEEEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCC-----ceeecHHHHHHHHH----hc
Q 029929 81 ADCCVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGN-----SRVVSEKKAKAWCA----SK 149 (185)
Q Consensus 81 ~d~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~----~~ 149 (185)
+|++|+|||++++ ++++.+..|+..+.... .+.|+++|+||+|+.... .+.+..+....++. ..
T Consensus 96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~-----~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVN-----PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC-----TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHHHHhcC-----CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 9999999999997 66666666666654322 277999999999987632 13344445556665 33
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
+ ++++++||++ .|++++|..|++.+
T Consensus 171 ~-~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 171 H-LSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp C-EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred C-cceEEEEech-hhHHHHHHHHHHHh
Confidence 4 7899999999 99999999999875
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.97 E-value=2.7e-29 Score=173.91 Aligned_cols=167 Identities=19% Similarity=0.258 Sum_probs=115.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc-EEEEEEecCCChhhhcc-cccchhccCc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR-LFTLQIWDTAGQERFQS-LGVAFYRGAD 82 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~d 82 (185)
+...++|+++|.+|+|||||++++++..+...+. +++..... +.+++. .+.+.+|||||+..+.. .+..+++.+|
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 80 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR 80 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence 3556999999999999999999999988766554 33333332 555544 57899999999998887 7788899999
Q ss_pred EEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH--------------
Q 029929 83 CCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA-------------- 147 (185)
Q Consensus 83 ~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~-------------- 147 (185)
++|+|+|+++.+ ++.....++..+..... ....+.|+++|+||+|+..........+.+.....
T Consensus 81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~ 159 (214)
T 2fh5_B 81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSM-ALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLD 159 (214)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHH-TSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC-------
T ss_pred EEEEEEECCCcCHHHHHHHHHHHHHHhhhh-hcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhcccccc
Confidence 999999999853 45555444443332211 11226799999999999865333333333332222
Q ss_pred -------hcC-------------CCcEEEeeeccC------CCHHHHHHHHHHH
Q 029929 148 -------SKG-------------NIPYFETSAKEG------FNVEAAFECIAKN 175 (185)
Q Consensus 148 -------~~~-------------~~~~~~~s~~~~------~~i~~~~~~i~~~ 175 (185)
..+ .++|++|||++| .|+++++++|.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 160 SSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp -----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred CCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 011 467999999999 9999999999875
No 102
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.94 E-value=3.9e-32 Score=186.89 Aligned_cols=165 Identities=25% Similarity=0.486 Sum_probs=131.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||++++.+..+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4569999999999999999999998877666666654433 344556667788899999999999999999999999999
Q ss_pred EEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc----------eeecHHHHHHHHHhcCCCcE
Q 029929 86 LVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS----------RVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~ 154 (185)
+|+|++++.+++.+. .|+..+..... +.|+++|+||+|+..... +....++...++...+..++
T Consensus 107 lv~D~~~~~s~~~~~~~~~~~l~~~~~-----~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 107 ICFSLVSPASFENVRAKWYPEVRHHCP-----NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 999999999998886 67666644322 679999999999975421 13444556666666663489
Q ss_pred EEeeeccCCCHHHHHHHHHHHH
Q 029929 155 FETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
+++||++|.|+++++++|.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998765
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=186.08 Aligned_cols=161 Identities=16% Similarity=0.278 Sum_probs=117.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
..++|+|+|.+|+|||||+++|.+..+... .+|.+..+ ..+. ...+.+.+|||||++.+...+..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 457999999999999999999998875433 34444333 2233 344789999999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~~ 162 (185)
|+|++++++++.+..++..+.... ...++|+++|+||+|+.... ..+++...... ...++++++||++|
T Consensus 239 V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~piilV~NK~Dl~~~~----~~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 239 VVDSNDRERVNEAREELMRMLAED---ELRDAVLLVFANKQDLPNAM----NAAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEETTCSSSHHHHHHHHHHHHTCG---GGTTCEEEEEEECTTSTTCC----CHHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEECCchHHHHHHHHHHHHHHhhh---ccCCCeEEEEEECccCCccc----CHHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 999999999998877776665432 22377999999999998642 22222222211 12357999999999
Q ss_pred CCHHHHHHHHHHHHhhc
Q 029929 163 FNVEAAFECIAKNALKN 179 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~ 179 (185)
.|+++++++|.+.+.++
T Consensus 312 ~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTHHHHHHHHHHHHTC-
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988754
No 104
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.96 E-value=7.2e-29 Score=169.28 Aligned_cols=161 Identities=19% Similarity=0.183 Sum_probs=109.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (185)
...++|+|+|.+|+|||||++++++..+.....++.+.+........+. .+.+||||| ++.+...+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 97 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE 97 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence 3569999999999999999999998875544445544444444444443 588999999 677777777
Q ss_pred chhccC---cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 76 AFYRGA---DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
.+++.+ |++++|+|++++.++.... +...+.. .+.|+++|+||+|+..........+++.+........
T Consensus 98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 169 (195)
T 1svi_A 98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY-------YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED 169 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH-------cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence 777766 9999999999877666532 2222221 2679999999999986532222223344322223347
Q ss_pred cEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 153 PYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
+++++||++|.|+++++++|.+.+.
T Consensus 170 ~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 170 ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999998764
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.96 E-value=9.1e-29 Score=179.75 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=126.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh-----cccccchhccC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF-----QSLGVAFYRGA 81 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~ 81 (185)
.+||+++|.+|+|||||++++++.... ....+..+.+.....+.+.+ .+.+.+|||||++.+ ...+..+++.+
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~a 81 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMV 81 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccC
Confidence 489999999999999999999887433 11123333333344444444 579999999999888 67788888999
Q ss_pred cEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----ecHHHHHHHHHhcC--CCcEE
Q 029929 82 DCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV----VSEKKAKAWCASKG--NIPYF 155 (185)
Q Consensus 82 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~--~~~~~ 155 (185)
|++|+|+|++++++++.+..|...+...... .++.|+++|+||+|+.....+. ...+++..++...+ .++++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~--~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~ 159 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKY--SPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGF 159 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHh--CCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 9999999999999999987775554433211 2267999999999998643344 55577788888776 38999
Q ss_pred EeeeccCCCHHHHHHHHHHHHhh
Q 029929 156 ETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
++||++ .++.+++..+++.+.+
T Consensus 160 ~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 160 PTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp ECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EeeecC-ChHHHHHHHHHHHHcC
Confidence 999999 8999999998876654
No 106
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.96 E-value=3.9e-28 Score=165.49 Aligned_cols=159 Identities=19% Similarity=0.265 Sum_probs=116.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~~ 75 (185)
...++|+++|.+|+|||||++++++.... ...++.+.+.......... .+.+||||| +..+.....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 96 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA-FVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE 96 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCS-CCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccc-cccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence 45689999999999999999999988733 2334433333333333332 467999999 666666666
Q ss_pred chhccC---cEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC
Q 029929 76 AFYRGA---DCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG 150 (185)
Q Consensus 76 ~~~~~~---d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 150 (185)
.+++.+ |++++|+|+++..+... +..|+... +.|+++|+||+|+..........+.+..++...+
T Consensus 97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~----------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 97 DYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL----------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT----------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc----------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 676655 99999999987543332 22333322 6799999999999876555666667777777666
Q ss_pred CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 151 NIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.++++++||++|.|+++++++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 6899999999999999999999998864
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.96 E-value=7.5e-28 Score=168.24 Aligned_cols=166 Identities=18% Similarity=0.064 Sum_probs=112.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhh---------cccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERF---------QSLGVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~ 76 (185)
...++|+|+|.+|+|||||+++|++..+.....+..+.+.........+ ..+.+|||||+... ......
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 104 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTTITA 104 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence 4568999999999999999999998876533334444444444444333 67899999997321 111233
Q ss_pred hhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecH---HHHHHHHHhcC-
Q 029929 77 FYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSE---KKAKAWCASKG- 150 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~- 150 (185)
++..+|++|+|+|++++.+++. ...|+..+... ..+.|+++|+||+|+.... .... +....++...+
T Consensus 105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-----~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~ 177 (228)
T 2qu8_A 105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-----FSNKSIVIGFNKIDKCNMD--SLSIDNKLLIKQILDNVKN 177 (228)
T ss_dssp HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-----C-CCCEEEEEECGGGCC----CCCHHHHHHHHHHHHHCCS
T ss_pred hhccccEEEEEEecccccCcchHHHHHHHHHHHHh-----hcCCcEEEEEeCcccCCch--hhHHHHHHHHHHHHHhcCC
Confidence 4678899999999999877642 23444444322 1267999999999998642 2222 23445544432
Q ss_pred CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 151 NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.++++++||++|.|+++++++|.+.+...+
T Consensus 178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 178 PIKFSSFSTLTGVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence 268999999999999999999999887653
No 108
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.96 E-value=2.4e-28 Score=162.69 Aligned_cols=153 Identities=12% Similarity=0.161 Sum_probs=110.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc--
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR-- 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~-- 79 (185)
.++|+++|++|+|||||++++.+..+.....++.+.+.....+.+++ ..+.+|||||+..+. .....+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999998776555556655555555565554 578999999987654 23344554
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++++|+|+++.+. ...|+..+... +.|+++|+||+|+........ +...++...+ ++++++||
T Consensus 81 ~~~~~i~v~D~~~~~~---~~~~~~~~~~~-------~~p~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~~SA 146 (165)
T 2wji_A 81 KPDLVVNIVDATALER---NLYLTLQLMEM-------GANLLLALNKMDLAKSLGIEI---DVDKLEKILG-VKVVPLSA 146 (165)
T ss_dssp CCSEEEEEEETTCHHH---HHHHHHHHHHT-------TCCEEEEEECHHHHHHTTCCC---CHHHHHHHHT-SCEEECBG
T ss_pred CCCEEEEEecCCchhH---hHHHHHHHHhc-------CCCEEEEEEchHhccccChhh---HHHHHHHHhC-CCEEEEEc
Confidence 7999999999997543 34455555431 679999999999864311111 2455555566 79999999
Q ss_pred ccCCCHHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKNA 176 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~ 176 (185)
++|.|+++++++|.+.+
T Consensus 147 ~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 147 AKKMGIEELKKAISIAV 163 (165)
T ss_dssp GGTBSHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998875
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.96 E-value=1.5e-28 Score=189.40 Aligned_cols=164 Identities=15% Similarity=0.242 Sum_probs=124.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
...++|+++|.+|+|||||+++|.+..+. ...+|.+..+. .+. ...+.+.+|||||++.+...+..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~~~~T~~~~~~--~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVE--TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEE--EEE--SSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccceeEE--EEE--eCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 34689999999999999999999998854 34555554433 333 34468999999999999999999999999999
Q ss_pred EEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh----cCCCcEEEeeecc
Q 029929 86 LVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS----KGNIPYFETSAKE 161 (185)
Q Consensus 86 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~----~~~~~~~~~s~~~ 161 (185)
+|||++++++++.+..|+..+.... ...++|+++|+||+|+.... ...++...... ...++++++||++
T Consensus 395 ~V~D~~~~~s~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~~----~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 467 (497)
T 3lvq_E 395 FVVDCADRDRIDEARQELHRIINDR---EMRDAIILIFANKQDLPDAM----KPHEIQEKLGLTRIRDRNWYVQPSCATS 467 (497)
T ss_dssp EEEETTCGGGHHHHHHHHHHHHTSG---GGTTCEEEEEEECCSSSSCC----CHHHHHHHTTCTTCCSSCEEEEECBTTT
T ss_pred EEEECcchhHHHHHHHHHHHHhhhh---hcCCCcEEEEEECCCCCcCC----CHHHHHHHhchhhhhcCCeEEEEEECCC
Confidence 9999999999999988887775432 22378999999999997642 22222222111 1135699999999
Q ss_pred CCCHHHHHHHHHHHHhhcCC
Q 029929 162 GFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 162 ~~~i~~~~~~i~~~~~~~~~ 181 (185)
|.|+++++++|.+.+....+
T Consensus 468 g~gi~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 468 GDGLYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp TBTHHHHHHHHHHHCC----
T ss_pred CCCHHHHHHHHHHHHHhcCC
Confidence 99999999999998876554
No 110
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.8e-29 Score=178.09 Aligned_cols=165 Identities=24% Similarity=0.302 Sum_probs=117.5
Q ss_pred cceeEEEEEcCC---------CCCHHHHHHHHHh---CCCCCCccCcc-eeeeEEEE--------------EEECCcEEE
Q 029929 6 RMLLKVIILGDS---------GVGKTSLMNQYVN---RKFSNQYKATI-GADFLTKE--------------VQFEDRLFT 58 (185)
Q Consensus 6 ~~~~~i~viG~~---------~~GKstli~~l~~---~~~~~~~~~~~-~~~~~~~~--------------~~~~~~~~~ 58 (185)
...+||+|+|.+ |+|||||+++|++ ..+...+.+++ +.++.... ..+++..+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 456999999999 9999999999998 44545555544 32221111 123456678
Q ss_pred EEEec-----------------------CCChhhhcccccchhc---------------------cCcEEEEEEECCCh-
Q 029929 59 LQIWD-----------------------TAGQERFQSLGVAFYR---------------------GADCCVLVYDVNVM- 93 (185)
Q Consensus 59 ~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 93 (185)
+.+|| ++|++.+...+..++. .+|++|+|+|++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 5555666666666666 79999999999998
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHH
Q 029929 94 -KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECI 172 (185)
Q Consensus 94 -~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i 172 (185)
++++.+..|+..+...... .+.|+++|+||+|+... +. .++...++.....++++++||++|.|+++++++|
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~---~~~piilV~NK~Dl~~~--~~--v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAK---TKKPIVVVLTKCDEGVE--RY--IRDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHH---TTCCEEEEEECGGGBCH--HH--HHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcc---CCCCEEEEEEccccccc--HH--HHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999998888765211 16799999999999643 22 2466666665434899999999999999999999
Q ss_pred HHHHh
Q 029929 173 AKNAL 177 (185)
Q Consensus 173 ~~~~~ 177 (185)
.+.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.95 E-value=4e-28 Score=164.82 Aligned_cols=159 Identities=21% Similarity=0.225 Sum_probs=113.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC-----------hhhhcccccch
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG-----------QERFQSLGVAF 77 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~ 77 (185)
++|+++|.+|+|||||++++.+..+...+.++.+...... ... .+.+||||| ++.+...+..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 7999999999999999999999887766666655443322 222 678999999 66667777777
Q ss_pred hcc-CcEEEEEEECCChhhHHHH-HHHHHH--------HHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929 78 YRG-ADCCVLVYDVNVMKSFDNL-NNWREE--------FLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (185)
Q Consensus 78 ~~~-~d~~i~v~d~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (185)
++. ++++++|+++.+..+++.+ ..|... +...... .+.|+++|+||+|+.... .+....++.
T Consensus 76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~-----~~~~~~~~~ 147 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LDIPTIVAVNKLDKIKNV-----QEVINFLAE 147 (190)
T ss_dssp HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TTCCEEEEEECGGGCSCH-----HHHHHHHHH
T ss_pred HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHh---cCCceEEEeehHhccCcH-----HHHHHHHHH
Confidence 766 6666666666666677665 444432 2222111 267999999999998642 455666666
Q ss_pred hcCC------CcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 148 SKGN------IPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 148 ~~~~------~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
..+. .+++++||++|.|+++++++|.+.+.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 148 KFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp HHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred HhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 6652 247999999999999999999999887654
No 112
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.95 E-value=5.4e-27 Score=170.42 Aligned_cols=166 Identities=20% Similarity=0.125 Sum_probs=124.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc----------ccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ----------SLG 74 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~~ 74 (185)
...-.|+++|.+|+|||||+|+|++..+.. ...+.++........... ...++.+|||||+.... ...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~ 86 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIA 86 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence 445789999999999999999999988753 333444444434444333 14689999999975433 455
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc-CCCc
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK-GNIP 153 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~ 153 (185)
..+++.+|++++|+|+++..+......|+..+.. .+.|+++|+||+|+... ..........+.... ...+
T Consensus 87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~-------~~~pvilV~NK~Dl~~~--~~~~~~~~~~l~~~~~~~~~ 157 (308)
T 3iev_A 87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP-------LNKPVIVVINKIDKIGP--AKNVLPLIDEIHKKHPELTE 157 (308)
T ss_dssp HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG-------GCCCEEEEEECGGGSSS--GGGGHHHHHHHHHHCTTCCC
T ss_pred HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh-------cCCCEEEEEECccCCCC--HHHHHHHHHHHHHhccCCCe
Confidence 6778899999999999998777776555665543 26799999999999732 344455666666665 4578
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 154 YFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
++++||++|.|+++++++|.+.+++...
T Consensus 158 i~~vSA~~g~gv~~L~~~l~~~l~~~~~ 185 (308)
T 3iev_A 158 IVPISALKGANLDELVKTILKYLPEGEP 185 (308)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSCBCCC
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCccCCC
Confidence 9999999999999999999999876543
No 113
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.95 E-value=2e-27 Score=157.31 Aligned_cols=151 Identities=19% Similarity=0.182 Sum_probs=104.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh-------hcccccchhcc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER-------FQSLGVAFYRG 80 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~~~~~~~ 80 (185)
++|+++|++|+|||||++++.+..+. ....++.+.+.....+...+ ..+.+|||||+.. +...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 68999999999999999999988754 23344444555555555555 3788999999776 33445567889
Q ss_pred CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 81 ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 81 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
+|++++|+|++++.+... .++...... .+.|+++|+||+|+.... ++...+. ..+..+++++||+
T Consensus 80 ~~~~i~v~d~~~~~~~~~--~~~~~~~~~------~~~p~ilv~nK~Dl~~~~------~~~~~~~-~~~~~~~~~~Sa~ 144 (161)
T 2dyk_A 80 AEVVLFAVDGRAELTQAD--YEVAEYLRR------KGKPVILVATKVDDPKHE------LYLGPLY-GLGFGDPIPTSSE 144 (161)
T ss_dssp CSEEEEEEESSSCCCHHH--HHHHHHHHH------HTCCEEEEEECCCSGGGG------GGCGGGG-GGSSCSCEECBTT
T ss_pred CCEEEEEEECCCcccHhH--HHHHHHHHh------cCCCEEEEEECcccccch------HhHHHHH-hCCCCCeEEEecc
Confidence 999999999998543322 222222221 167999999999997541 2223333 4453389999999
Q ss_pred cCCCHHHHHHHHHHHH
Q 029929 161 EGFNVEAAFECIAKNA 176 (185)
Q Consensus 161 ~~~~i~~~~~~i~~~~ 176 (185)
+|.|+++++++|.+.+
T Consensus 145 ~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 145 HARGLEELLEAIWERL 160 (161)
T ss_dssp TTBSHHHHHHHHHHHC
T ss_pred cCCChHHHHHHHHHhC
Confidence 9999999999998875
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.95 E-value=1.6e-27 Score=159.75 Aligned_cols=156 Identities=22% Similarity=0.298 Sum_probs=111.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc--------ccchh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL--------GVAFY 78 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~ 78 (185)
.++|+++|.+|+|||||++++.+.... ....++++.++....+.+++ ..+.+|||||+..+... ...++
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQEI 81 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence 479999999999999999999987643 23345555566666666665 35789999997543211 12357
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
+.+|++++|+|++++.+++. ..|+..+..... .++|+++|+||+|+........ .....+++++|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~~~~----------~~~~~~~~~~S 146 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLP----AKLPITVVRNKADITGETLGMS----------EVNGHALIRLS 146 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSC----TTCCEEEEEECHHHHCCCCEEE----------EETTEEEEECC
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcc----cCCCEEEEEECccCCcchhhhh----------hccCCceEEEe
Confidence 89999999999999877653 466666655432 2679999999999864321111 01236899999
Q ss_pred eccCCCHHHHHHHHHHHHhhcC
Q 029929 159 AKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|++|.|+++++++|.+.+....
T Consensus 147 A~~g~gv~~l~~~l~~~~~~~~ 168 (172)
T 2gj8_A 147 ARTGEGVDVLRNHLKQSMGFDT 168 (172)
T ss_dssp TTTCTTHHHHHHHHHHHC----
T ss_pred CCCCCCHHHHHHHHHHHhhhcc
Confidence 9999999999999998876544
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=2.3e-27 Score=160.95 Aligned_cols=159 Identities=12% Similarity=0.139 Sum_probs=118.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR 79 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~ 79 (185)
...++|+++|++|+|||||++++++........++.+.+.....+.+.+ ..+.+|||||+..+. .....++.
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 3568999999999999999999998765555556666666666666654 688999999987664 23444553
Q ss_pred --cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 80 --GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 80 --~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
.+|++++|+|.++ ++....|...+.. .+.|+++|+||+|+....... .....++...+ ++++++
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-------~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~-~~~~~~ 148 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME-------MGANLLLALNKMDLAKSLGIE---IDVDKLEKILG-VKVVPL 148 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT-------TTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEEC
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh-------cCCCEEEEEEhhhccccccch---HHHHHHHHHhC-CCeEEE
Confidence 5999999999985 4445556665543 267999999999986432111 23455555566 799999
Q ss_pred eeccCCCHHHHHHHHHHHHhhcC
Q 029929 158 SAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
||+++.|+++++++|.+.+....
T Consensus 149 Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 149 SAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp BGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EecCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999987665
No 116
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.95 E-value=1.2e-27 Score=166.48 Aligned_cols=166 Identities=14% Similarity=0.066 Sum_probs=110.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC--CCCccCcceeeeEEEEEEEC-CcEEEEEEecCCCh----------hhhcc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SNQYKATIGADFLTKEVQFE-DRLFTLQIWDTAGQ----------ERFQS 72 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~----------~~~~~ 72 (185)
...++|+|+|.+|+|||||+++|++... .....+..+.. ....... .....+.+|||||. +.+..
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~ 104 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQH--INYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ 104 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCC--EEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccc--eEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence 3468999999999999999999998863 22223333333 2333333 34467889999993 33445
Q ss_pred cccchhcc---CcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc
Q 029929 73 LGVAFYRG---ADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK 149 (185)
Q Consensus 73 ~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~ 149 (185)
....++.. +|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+..........+.+.......
T Consensus 105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~ 176 (223)
T 4dhe_A 105 LLSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP-------TGKPIHSLLTKCDKLTRQESINALRATQKSLDAY 176 (223)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG-------GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh-------cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhh
Confidence 55555555 788999999987543222 334444432 2679999999999986422222233333333332
Q ss_pred ------CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 150 ------GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 150 ------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
...+++++||++|.|+++++++|.+.+.....
T Consensus 177 ~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 177 RDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 45789999999999999999999999876543
No 117
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.95 E-value=1.1e-27 Score=169.68 Aligned_cols=151 Identities=17% Similarity=0.206 Sum_probs=114.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc----------cccchh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----------LGVAFY 78 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~ 78 (185)
.+|+++|.+|||||||+|+|++........++.+.+.....+.+.+. .+.+|||||...+.. ....++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 58999999999999999999998766666677777777777776653 788999999766553 344555
Q ss_pred --ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 79 --RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 79 --~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
..+|++|+|+|+++.+....+ ...+. .. +.|+++|+||+|+......... ...+....+ +++++
T Consensus 80 ~~~~~d~vi~VvDas~~~~~~~l---~~~l~----~~---~~pvilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~vi~ 145 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLERHLYL---TSQLF----EL---GKPVVVALNMMDIAEHRGISID---TEKLESLLG-CSVIP 145 (256)
T ss_dssp HHSCCSEEEEEEEGGGHHHHHHH---HHHHT----TS---CSCEEEEEECHHHHHHTTCEEC---HHHHHHHHC-SCEEE
T ss_pred hhCCCCEEEEEeeCCCchhHHHH---HHHHH----Hc---CCCEEEEEEChhcCCcCCcHHH---HHHHHHHcC-CCEEE
Confidence 789999999999986554433 22222 11 6799999999998754333333 333445555 89999
Q ss_pred eeeccCCCHHHHHHHHHHH
Q 029929 157 TSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~ 175 (185)
+||++|.|+++++++|.+.
T Consensus 146 ~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 146 IQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp CBGGGTBSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999886
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.95 E-value=6e-27 Score=166.17 Aligned_cols=156 Identities=21% Similarity=0.146 Sum_probs=116.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------ccchh-
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------GVAFY- 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~- 78 (185)
...++|+++|.+|||||||+++|++..+.....++.+.+.....+... ...+.+|||||+..+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~ 80 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLL 80 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence 346899999999999999999999887665555666555555555544 368899999998766542 24444
Q ss_pred -ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 79 -RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 79 -~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
..+|++++|+|+++.++.. .|...+... +.|+++|+||+|+........ +...+...++ ++++++
T Consensus 81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~-------~~pvilv~NK~Dl~~~~~i~~---~~~~l~~~lg-~~vi~~ 146 (258)
T 3a1s_A 81 KGDADLVILVADSVNPEQSL---YLLLEILEM-------EKKVILAMTAIDEAKKTGMKI---DRYELQKHLG-IPVVFT 146 (258)
T ss_dssp HSCCSEEEEEEETTSCHHHH---HHHHHHHTT-------TCCEEEEEECHHHHHHTTCCB---CHHHHHHHHC-SCEEEC
T ss_pred hcCCCEEEEEeCCCchhhHH---HHHHHHHhc-------CCCEEEEEECcCCCCccchHH---HHHHHHHHcC-CCEEEE
Confidence 5899999999999865432 344444321 679999999999865322222 3455666666 899999
Q ss_pred eeccCCCHHHHHHHHHHHHh
Q 029929 158 SAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~ 177 (185)
||++|.|+++++++|.+.+.
T Consensus 147 SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 147 SSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CTTTCTTHHHHHHHHHHHHH
T ss_pred EeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999999875
No 119
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.94 E-value=2.1e-27 Score=184.36 Aligned_cols=165 Identities=24% Similarity=0.338 Sum_probs=120.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEE------EE--ECCcEEEEEEecCCChhhhcccccch
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKE------VQ--FEDRLFTLQIWDTAGQERFQSLGVAF 77 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~D~~g~~~~~~~~~~~ 77 (185)
...+||+++|.+|||||||++++++..+.....++.+.++.... +. ..+..+.+.+||+||++.+......+
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~ 118 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF 118 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence 45699999999999999999999999887777777776665442 11 12345789999999999999999999
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++|+|+|+++. +....|+..+..... +.|+++|+||+|+... +....+.+...+...+ ++++++
T Consensus 119 l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~-----~~pvilV~NK~Dl~~~--~~v~~~~~~~~~~~~~-~~~~~v 187 (535)
T 3dpu_A 119 MTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGG-----KSPVIVVMNKIDENPS--YNIEQKKINERFPAIE-NRFHRI 187 (535)
T ss_dssp HHSSEEEEEEECGGGG---GGHHHHHHHHHHHSS-----SCCEEEEECCTTTCTT--CCCCHHHHHHHCGGGT-TCEEEC
T ss_pred ccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCC-----CCCEEEEEECCCcccc--cccCHHHHHHHHHhcC-CceEEE
Confidence 9999999999999865 445677777776543 5799999999999865 4555677777777666 789999
Q ss_pred eeccCCCHHHHHHHHHHHHhhcCC
Q 029929 158 SAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
||++|.|+++++++|.+.+.....
T Consensus 188 SA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 188 SCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp CC-----CTTHHHHHHHHHTCTTS
T ss_pred ecCcccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999876543
No 120
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.94 E-value=9.9e-28 Score=171.69 Aligned_cols=156 Identities=19% Similarity=0.229 Sum_probs=116.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc----------ccch
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL----------GVAF 77 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~~ 77 (185)
.++|+++|.+|||||||+|+|++........++.+.+.....+...+ ..+.+|||||+..+... ...+
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 58999999999999999999999876656667777777666666654 46788999997765521 2222
Q ss_pred h--ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 78 Y--RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 78 ~--~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
+ +.+|++++|+|+++.+....+ ...+... ++|+++|+||+|+......... ...+....+ ++++
T Consensus 81 ~~~~~~d~ii~VvD~~~~~~~~~~---~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~i 146 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNLERNLYL---TLQLLEL-------GIPCIVALNMLDIAEKQNIRIE---IDALSARLG-CPVI 146 (274)
T ss_dssp HHHTCCSEEEEEEEGGGHHHHHHH---HHHHHHH-------TCCEEEEEECHHHHHHTTEEEC---HHHHHHHHT-SCEE
T ss_pred HhhcCCCEEEEEecCCChHHHHHH---HHHHHhc-------CCCEEEEEECccchhhhhHHHH---HHHHHHhcC-CCEE
Confidence 2 689999999999986554433 3333322 6799999999998754333333 344445555 8999
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhc
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
++||++|.|+++++++|.+.+...
T Consensus 147 ~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 147 PLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp ECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred EEEcCCCCCHHHHHHHHHHHHhcC
Confidence 999999999999999998877644
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.94 E-value=1.7e-27 Score=169.89 Aligned_cols=155 Identities=17% Similarity=0.194 Sum_probs=112.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc------ccccchhc-
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ------SLGVAFYR- 79 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~~- 79 (185)
..++|+++|.+|||||||+++|++........++.+.+..... +.. ...+.+|||||+..+. .....++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 3589999999999999999999987655444555544433333 343 5678999999987664 33445554
Q ss_pred -cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEee
Q 029929 80 -GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETS 158 (185)
Q Consensus 80 -~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 158 (185)
.+|++++|+|+++.+.. ..|...+.+ .+.|+++|+||+|+....... .+...+....+ ++++++|
T Consensus 79 ~~~d~vi~V~D~t~~e~~---~~~~~~l~~-------~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg-~~vi~~S 144 (272)
T 3b1v_A 79 QRADSILNVVDATNLERN---LYLTTQLIE-------TGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG-VPVVATS 144 (272)
T ss_dssp TCCSEEEEEEEGGGHHHH---HHHHHHHHH-------TCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT-SCEEECB
T ss_pred CCCCEEEEEecCCchHhH---HHHHHHHHh-------cCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC-CCEEEEE
Confidence 69999999999975543 345454443 167999999999986432122 23455555566 8999999
Q ss_pred eccCCCHHHHHHHHHHHHhh
Q 029929 159 AKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 159 ~~~~~~i~~~~~~i~~~~~~ 178 (185)
|++|.|+++++++|.+.+..
T Consensus 145 A~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 145 ALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp TTTTBSHHHHHHHHHHSCTT
T ss_pred ccCCCCHHHHHHHHHHHHhh
Confidence 99999999999999987643
No 122
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.94 E-value=1.2e-27 Score=172.87 Aligned_cols=160 Identities=17% Similarity=0.194 Sum_probs=114.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---cccchhccCcE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---LGVAFYRGADC 83 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~d~ 83 (185)
||+++|..|+|||||++++.+...+. ...+|.+.+... ++ ..+.+++|||+|++++.. ....+++.+++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 68999999999999999887654332 245666655543 22 347899999999999864 35788999999
Q ss_pred EEEEEECCCh--hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-----eeecHHHHHHHHHhc---CCCc
Q 029929 84 CVLVYDVNVM--KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-----RVVSEKKAKAWCASK---GNIP 153 (185)
Q Consensus 84 ~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-----~~~~~~~~~~~~~~~---~~~~ 153 (185)
+|+|||++++ +.......|+..+... .+++|+++++||+|+..... +++..++..+++... ..++
T Consensus 76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~-----~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNLAMIIEYAYKV-----NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVS 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHHHHHHHHHHHH-----CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEE
T ss_pred EEEEEECCchHHHHHHHHHHHHHHHhhc-----CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCce
Confidence 9999999987 2222222233333222 23789999999999986532 334455555555531 2478
Q ss_pred EEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 154 YFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 154 ~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|+++||++ .++.++|..|++.+.++.
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li~~~ 176 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLIPEL 176 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSSTTH
T ss_pred EEEeccCC-CcHHHHHHHHHHHHHhhH
Confidence 99999998 589999999998877654
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.94 E-value=2.9e-26 Score=163.98 Aligned_cols=158 Identities=20% Similarity=0.192 Sum_probs=118.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc------cccchh--c
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS------LGVAFY--R 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~--~ 79 (185)
.++|+++|++|||||||+++|++........++.+.+.....+...+ ..+.+|||||+..+.. ....++ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 58999999999999999999999877666667777777666666655 4588999999876655 344444 6
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++++|+|+++.+ ....+...+.... ..|+++|+||+|+......... ...+....+ ++++++||
T Consensus 81 ~~d~vi~v~D~~~~~---~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~~~~~~~~---~~~l~~~lg-~~~~~~Sa 147 (271)
T 3k53_A 81 NADVIVDIVDSTCLM---RNLFLTLELFEME------VKNIILVLNKFDLLKKKGAKID---IKKMRKELG-VPVIPTNA 147 (271)
T ss_dssp CCSEEEEEEEGGGHH---HHHHHHHHHHHTT------CCSEEEEEECHHHHHHHTCCCC---HHHHHHHHS-SCEEECBG
T ss_pred CCcEEEEEecCCcch---hhHHHHHHHHhcC------CCCEEEEEEChhcCcccccHHH---HHHHHHHcC-CcEEEEEe
Confidence 899999999999753 2233444443321 2799999999998653222222 445555666 89999999
Q ss_pred ccCCCHHHHHHHHHHHHhhcC
Q 029929 160 KEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~~ 180 (185)
++|.|+.++++++.+.+....
T Consensus 148 ~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 148 KKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp GGTBTHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999886543
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.93 E-value=1.8e-25 Score=161.71 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=112.4
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhh--------hc
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--------FQ 71 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~ 71 (185)
|+.. .+..+|+++|.+|+|||||+|+|++..+.. ...+.++......... ....++.+|||||... +.
T Consensus 1 m~~~-~~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~ 77 (301)
T 1wf3_A 1 MAEK-TYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHKPMDALGEFMD 77 (301)
T ss_dssp --CC-CEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEE--ETTEEEEEEECCCCCCCCSHHHHHHH
T ss_pred CCCC-ccCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEE--eCCcEEEEecCccccchhhHHHHHHH
Confidence 4443 345689999999999999999999988753 3333333333222232 2346899999999665 44
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (185)
.....+++.+|++++|+|++++.+... ..++..+.... .+.|+++|+||+|+.... ....+.+..+ .+.
T Consensus 78 ~~~~~~l~~ad~il~VvD~~~~~~~~~-~~i~~~l~~~~-----~~~p~ilV~NK~Dl~~~~--~~~~~~~~~~---~~~ 146 (301)
T 1wf3_A 78 QEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-----GKVPILLVGNKLDAAKYP--EEAMKAYHEL---LPE 146 (301)
T ss_dssp HHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-----TTSCEEEEEECGGGCSSH--HHHHHHHHHT---STT
T ss_pred HHHHHHHhcCCEEEEEEECCCCCChHH-HHHHHHHHhhc-----CCCCEEEEEECcccCCch--HHHHHHHHHh---cCc
Confidence 455677899999999999988644432 22233443321 267999999999997541 1012222222 344
Q ss_pred CcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 152 IPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 152 ~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.+++++||++|.|+++++++|.+.+++..
T Consensus 147 ~~~~~iSA~~g~gv~~l~~~l~~~l~~~~ 175 (301)
T 1wf3_A 147 AEPRMLSALDERQVAELKADLLALMPEGP 175 (301)
T ss_dssp SEEEECCTTCHHHHHHHHHHHHTTCCBCC
T ss_pred CcEEEEeCCCCCCHHHHHHHHHHhcccCC
Confidence 67999999999999999999998876543
No 125
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.93 E-value=3e-25 Score=169.81 Aligned_cols=160 Identities=21% Similarity=0.214 Sum_probs=113.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFY 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~ 78 (185)
...++|+++|+.++|||||+++|++.. ......++.+.+.....+.+++ ..+++|||||++.+...+..++
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~ 94 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAA 94 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHH
Confidence 346899999999999999999999776 2223333444444333444443 6889999999999988888899
Q ss_pred ccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc---CCC
Q 029929 79 RGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---GNI 152 (185)
Q Consensus 79 ~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~ 152 (185)
..+|++|+|+|+++ +.+.+.+. .+. . .++|+++++||+|+.+....+...+++..++... ..+
T Consensus 95 ~~aD~~ilVvda~~g~~~qt~e~l~----~~~-~------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~ 163 (482)
T 1wb1_A 95 DIIDLALIVVDAKEGPKTQTGEHML----ILD-H------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNS 163 (482)
T ss_dssp TSCCEEEEEEETTTCSCHHHHHHHH----HHH-H------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGC
T ss_pred hhCCEEEEEEecCCCccHHHHHHHH----HHH-H------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccc
Confidence 99999999999987 44444332 111 1 1678899999999986432333445566665544 247
Q ss_pred cEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 153 PYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 153 ~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
+++++||++|.|+++++++|.+.+..
T Consensus 164 ~ii~vSA~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 164 SIIPISAKTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHhhcC
Confidence 99999999999999999999998763
No 126
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.93 E-value=8.2e-25 Score=164.43 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=117.2
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE-------EE---------EE---CCcEEEEEEecCC
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK-------EV---------QF---EDRLFTLQIWDTA 65 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~-------~~---------~~---~~~~~~~~~~D~~ 65 (185)
+...++|+++|++|+|||||+++|++....... .....+.... .+ .. ......+.+||||
T Consensus 5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 456799999999999999999999975433210 0000000000 00 00 1123689999999
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW 145 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~ 145 (185)
|++.+...+..++..+|++|+|+|+++..+......++..+.... ..|+++|+||+|+.+........+++.++
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~------~~~iivviNK~Dl~~~~~~~~~~~~i~~~ 157 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG------VKNLIIVQNKVDVVSKEEALSQYRQIKQF 157 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT------CCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC------CCCEEEEEECccccchHHHHHHHHHHHHH
Confidence 999999999999999999999999998765555555555443321 23899999999998643222333444444
Q ss_pred HHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 146 CASK--GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 146 ~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.... ..++++++||++|.|+++++++|.+.++...
T Consensus 158 l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 158 TKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 4332 2478999999999999999999998776543
No 127
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.93 E-value=1.4e-25 Score=170.17 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=112.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh----------hhcccc-
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE----------RFQSLG- 74 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~----------~~~~~~- 74 (185)
..++|+++|.+|+|||||++++++.... ....++++.+.....+.+++. .+.+|||||+. .+....
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHH
Confidence 4689999999999999999999988753 344455555655556666653 58899999973 333222
Q ss_pred cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH----HHHHHhcC
Q 029929 75 VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA----KAWCASKG 150 (185)
Q Consensus 75 ~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~ 150 (185)
..+++.+|++++|+|++++.++... .|...+.. .+.|+++|+||+|+.+.. ....++. ........
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~-------~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE-------AGKAVVIVVNKWDAVDKD--ESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSCCC--TTHHHHHHHHHHHHCGGGT
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH-------cCCcEEEEEECccCCCcc--hHHHHHHHHHHHHhcccCC
Confidence 2467889999999999998777664 45554432 267999999999998642 2222222 22222234
Q ss_pred CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 151 NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.++++++||++|.|++++++.+.+.+....
T Consensus 322 ~~~~~~~SA~tg~~v~~l~~~i~~~~~~~~ 351 (436)
T 2hjg_A 322 YAPILFMSALTKKRIHTLMPAIIKASENHS 351 (436)
T ss_dssp TSCEEECCTTTCTTGGGHHHHHHHHHHHHT
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHHHhh
Confidence 589999999999999999999998887544
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.93 E-value=4.4e-25 Score=168.17 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=97.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc--------cch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 77 (185)
..++|+++|.+|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||+..+...+ ..+
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 3589999999999999999999987532 34455566666556666655 578999999987655332 346
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++++|+|++++.+++.+..+.. +...+. +.|+++|+||+|+...... . ...+... +..+++++
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~~~~~~-~l~~l~-----~~piIvV~NK~Dl~~~~~~--~---~~~l~~~-~~~~~i~v 377 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDELTEIRE-LKAAHP-----AAKFLTVANKLDRAANADA--L---IRAIADG-TGTEVIGI 377 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGHHHHHH-HHHHCT-----TSEEEEEEECTTSCTTTHH--H---HHHHHHH-HTSCEEEC
T ss_pred cccCCEEEEEEECCCCcchhhhHHHHH-HHHhcC-----CCCEEEEEECcCCCCccch--h---HHHHHhc-CCCceEEE
Confidence 789999999999999877754333222 222222 5799999999999865321 1 1223232 22689999
Q ss_pred eeccCCCHHHHHHHHHHHHh
Q 029929 158 SAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~ 177 (185)
||++|.|+++++++|.+.+.
T Consensus 378 SAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 378 SALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp BTTTTBSHHHHHHHHTHHHH
T ss_pred EECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999987
No 129
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.93 E-value=1.9e-26 Score=159.95 Aligned_cols=149 Identities=14% Similarity=0.145 Sum_probs=101.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc-
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG- 80 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~- 80 (185)
+...++|+++|++|+|||||+++|.+..+.. ...++.+..+ ....+.+|||||++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 4567999999999999999999999987654 2333333222 34578899999999988888888877
Q ss_pred ---CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec----HHHHHHHHHhcCCC
Q 029929 81 ---ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS----EKKAKAWCASKGNI 152 (185)
Q Consensus 81 ---~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~----~~~~~~~~~~~~~~ 152 (185)
+|++|+|+|++ +++++.....|+..+..........+.|+++|+||+|+......... .+++..+....+ .
T Consensus 80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~-~ 158 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK-K 158 (218)
T ss_dssp GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh-c
Confidence 89999999999 88888888888777765432111236799999999999875321111 333444444333 4
Q ss_pred cEEEeeeccCC
Q 029929 153 PYFETSAKEGF 163 (185)
Q Consensus 153 ~~~~~s~~~~~ 163 (185)
+++++||+++.
T Consensus 159 ~~~~~Sa~~~~ 169 (218)
T 1nrj_B 159 SLNEVERKINE 169 (218)
T ss_dssp HHHC-------
T ss_pred ccccccccccc
Confidence 66667776654
No 130
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.93 E-value=2.2e-24 Score=162.35 Aligned_cols=165 Identities=17% Similarity=0.165 Sum_probs=108.0
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCccee--eeEEEEEEE-------------C--C----cEEEEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ 60 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 60 (185)
+...++|+++|+.++|||||+++|++... .....+..+. .+....+.. + + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 34569999999999999999999985432 2233342232 332222211 1 1 136899
Q ss_pred EecCCChhhhcccccchhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (185)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 136 (185)
+|||||++.+...+...+..+|++|+|+|+++. .+.+.+.. + .... ..|+++++||+|+.......
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~-~~l~-----~~~iivv~NK~Dl~~~~~~~ 154 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMA----L-EILG-----IDKIIIVQNKIDLVDEKQAE 154 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHH----H-HHTT-----CCCEEEEEECTTSSCTTTTT
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHH----H-HHcC-----CCeEEEEEEccCCCCHHHHH
Confidence 999999999988888888899999999999953 34433321 1 1111 23799999999998754333
Q ss_pred ecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
...+++.+++... ..++++++||++|.|+++++++|.+.++..
T Consensus 155 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~ 199 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTP 199 (408)
T ss_dssp THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 4456666666542 347999999999999999999999877643
No 131
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.92 E-value=4e-25 Score=162.03 Aligned_cols=164 Identities=18% Similarity=0.136 Sum_probs=120.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccchh---ccC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVAFY---RGA 81 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~---~~~ 81 (185)
.+|+|+|.+|||||||+++|++........+.++.......+.+++. ..+.+|||||... ...+...++ ..+
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~-~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~ 237 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG-RSFVMADLPGLIEGAHQGVGLGHQFLRHIERT 237 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS-CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC-ceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence 46899999999999999999987644333444445555555555542 4789999999543 223334444 459
Q ss_pred cEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEe
Q 029929 82 DCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFET 157 (185)
Q Consensus 82 d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 157 (185)
|++|+|+|+++ +++++.+..|..++..+... ..++|+++|+||+|+... .+....+...+.. .+++++
T Consensus 238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~--l~~~p~ilV~NK~Dl~~~------~e~~~~l~~~l~~~~~v~~i 309 (342)
T 1lnz_A 238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLR--LTERPQIIVANKMDMPEA------AENLEAFKEKLTDDYPVFPI 309 (342)
T ss_dssp CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSS--TTTSCBCBEEECTTSTTH------HHHHHHHHHHCCSCCCBCCC
T ss_pred cEEEEEEECCcccccChHHHHHHHHHHHHHhhhh--hcCCCEEEEEECccCCCC------HHHHHHHHHHhhcCCCEEEE
Confidence 99999999998 78888888888887765321 136799999999999753 1344455555442 689999
Q ss_pred eeccCCCHHHHHHHHHHHHhhcCC
Q 029929 158 SAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
||+++.|+++++++|.+.+...+.
T Consensus 310 SA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 310 SAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp SSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred ECCCCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999999986654
No 132
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.92 E-value=1.2e-24 Score=165.89 Aligned_cols=164 Identities=17% Similarity=0.157 Sum_probs=114.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCcEEEEEEecCCC----------hhhhcccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG----------QERFQSLG 74 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~ 74 (185)
...++|+++|.+|+|||||++++.+... .....++++.+.....+..++. .+++||||| ++.+....
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHH
Confidence 3568999999999999999999997653 2334455555554555555553 788999999 45555443
Q ss_pred c-chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc----
Q 029929 75 V-AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK---- 149 (185)
Q Consensus 75 ~-~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~---- 149 (185)
. .+++.+|++++|+|+++..+... ..+...+.. .++|+++|+||+|+... +....+++.+.+...
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~-------~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~ 340 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE-------AGKAVVIVVNKWDAVDK--DESTMKEFEENIRDHFQFL 340 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH-------TTCEEEEEEECGGGSCC--CSSHHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH-------cCCCEEEEEEChhcCCC--chHHHHHHHHHHHHhcccC
Confidence 3 36789999999999987543222 344444432 26799999999999865 334444444444432
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
+.++++++||++|.|++++++++.+.+.....
T Consensus 341 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~~ 372 (456)
T 4dcu_A 341 DYAPILFMSALTKKRIHTLMPAIIKASENHSL 372 (456)
T ss_dssp TTSCEEECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcCCCCcCHHHHHHHHHHHHHHhcc
Confidence 35899999999999999999999998876543
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.92 E-value=8.2e-24 Score=156.73 Aligned_cols=162 Identities=21% Similarity=0.209 Sum_probs=116.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc---------cccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS---------LGVA 76 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~ 76 (185)
...++|+++|.+|+|||||++++.+........+..+.......+... ...+.+|||||...... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 242 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAILA 242 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence 356899999999999999999999877443333444444444444333 35789999999643211 1123
Q ss_pred hhccCcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcE
Q 029929 77 FYRGADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPY 154 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (185)
....+|++++|+|++++. +++....|+..+..... +.|+++|+||+|+.... ..+....++...+ +++
T Consensus 243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-----~~piilV~NK~Dl~~~~----~~~~~~~~~~~~~-~~~ 312 (357)
T 2e87_A 243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-----DLPFLVVINKIDVADEE----NIKRLEKFVKEKG-LNP 312 (357)
T ss_dssp GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-----TSCEEEEECCTTTCCHH----HHHHHHHHHHHTT-CCC
T ss_pred HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-----CCCEEEEEECcccCChH----HHHHHHHHHHhcC-CCe
Confidence 345699999999998876 66776778777766542 57999999999997541 1234444554444 799
Q ss_pred EEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 155 FETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 155 ~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+++||++|+|+++++++|.+.+...
T Consensus 313 ~~iSA~~g~gi~~l~~~i~~~l~~~ 337 (357)
T 2e87_A 313 IKISALKGTGIDLVKEEIIKTLRPL 337 (357)
T ss_dssp EECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999988653
No 134
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.92 E-value=3.7e-24 Score=161.23 Aligned_cols=165 Identities=18% Similarity=0.212 Sum_probs=113.9
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCC---CCCccCccee--eeEEEEEEE-------------C--C----cEEEEE
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKF---SNQYKATIGA--DFLTKEVQF-------------E--D----RLFTLQ 60 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~---~~~~~~~~~~--~~~~~~~~~-------------~--~----~~~~~~ 60 (185)
+...++|+++|+.++|||||+++|++... .....+..+. .+....+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 35569999999999999999999985432 2233343333 222222211 0 1 136899
Q ss_pred EecCCChhhhcccccchhccCcEEEEEEECCCh----hhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929 61 IWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----KSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (185)
Q Consensus 61 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 136 (185)
+|||||+..+...+...+..+|++|+|+|+++. .+.+.+.. +... . ..|+++++||+|+.......
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~-~-----~~~iivviNK~Dl~~~~~~~ 156 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQII-G-----QKNIIIAQNKIELVDKEKAL 156 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHH-T-----CCCEEEEEECGGGSCHHHHH
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc-C-----CCcEEEEEECccCCCHHHHH
Confidence 999999999988888888899999999999953 34443322 1111 1 23799999999998643222
Q ss_pred ecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 137 VSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 137 ~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
...+++.+++... ..++++++||++|.|+++++++|.+.++..
T Consensus 157 ~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p 201 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTP 201 (410)
T ss_dssp HHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCC
Confidence 3344555555432 347999999999999999999999877643
No 135
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.92 E-value=9.7e-26 Score=169.23 Aligned_cols=159 Identities=22% Similarity=0.234 Sum_probs=112.1
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc-------ccc
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL-------GVA 76 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-------~~~ 76 (185)
....++|+|+|..|+|||||+++|++..+. ....++++.+.....+.+.+.. .+.+|||||+..+... ...
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~ 109 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARR 109 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHH
Confidence 345799999999999999999999988763 3445555666666677766653 7899999998876554 234
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
++..+|++|+|+|++..+. ...|+..+... +.|+++|+||+|+...... +....+....+ +++++
T Consensus 110 ~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~-------~~piIvV~NK~Dl~~~~~~----~~~~~l~~~~g-~~v~~ 174 (423)
T 3qq5_A 110 VFYRADCGILVTDSAPTPY---EDDVVNLFKEM-------EIPFVVVVNKIDVLGEKAE----ELKGLYESRYE-AKVLL 174 (423)
T ss_dssp HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT-------TCCEEEECCCCTTTTCCCT----HHHHHSSCCTT-CCCCC
T ss_pred HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc-------CCCEEEEEeCcCCCCccHH----HHHHHHHHHcC-CCEEE
Confidence 7788999999999943332 24555555433 6799999999999875322 34444444444 79999
Q ss_pred eeeccCCCHHHHHHHHHHHHhhc
Q 029929 157 TSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
+||++|.|+++++++|.+.++..
T Consensus 175 vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 175 VSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999998544
No 136
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.91 E-value=5e-24 Score=162.47 Aligned_cols=152 Identities=23% Similarity=0.272 Sum_probs=113.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh-hhcc--------cccch
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE-RFQS--------LGVAF 77 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~--------~~~~~ 77 (185)
.++|+++|.+|+|||||+|+|++.... ....++++.++....+.+++ ..+.+|||||.. .... ....+
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 489999999999999999999987643 44556666676666666664 568999999977 4432 22456
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++|+|+|++++.+++... ++.. +. +.|+++|+||+|+... ...+++..+.. ..++++++
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~~-il~~----l~-----~~piivV~NK~DL~~~----~~~~~~~~~~~--~~~~~i~i 384 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDRK-ILER----IK-----NKRYLVVINKVDVVEK----INEEEIKNKLG--TDRHMVKI 384 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHHH-HHHH----HT-----TSSEEEEEEECSSCCC----CCHHHHHHHHT--CSTTEEEE
T ss_pred hhcccEEEEEecCCCCCCHHHHH-HHHH----hc-----CCCEEEEEECcccccc----cCHHHHHHHhc--CCCcEEEE
Confidence 78999999999999887766532 2222 21 5699999999999753 22344444322 23689999
Q ss_pred eeccCCCHHHHHHHHHHHHh
Q 029929 158 SAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~ 177 (185)
||++|.|+++++++|.+.+.
T Consensus 385 SAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 385 SALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EGGGTCCHHHHHHHHHHHTH
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999765
No 137
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.91 E-value=1.6e-23 Score=163.09 Aligned_cols=162 Identities=18% Similarity=0.208 Sum_probs=111.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC--C-------------CccCcceeeeEEEEEEE---CCcEEEEEEecCCChh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS--N-------------QYKATIGADFLTKEVQF---EDRLFTLQIWDTAGQE 68 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~--~-------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~ 68 (185)
+..+|+++|+.++|||||+++|+..... . ....+.+.......+.+ ++..+.+++|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4679999999999999999999863211 0 00111222211222222 4556899999999999
Q ss_pred hhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHh
Q 029929 69 RFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCAS 148 (185)
Q Consensus 69 ~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~ 148 (185)
+|...+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+.... ..+...++...
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~--------~~ipiIvViNKiDl~~a~----~~~v~~ei~~~ 150 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME--------MDLEVVPVLNKIDLPAAD----PERVAEEIEDI 150 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH--------CCCCEEEeeeccCccccc----HHHHHHHHHHH
Confidence 999999999999999999999998766666655655432 167999999999998642 22223333343
Q ss_pred cC--CCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 149 KG--NIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 149 ~~--~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
++ ..+++++||++|.|+++++++|.+.++...
T Consensus 151 lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 151 VGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp TCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred hCCCcceEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 33 235999999999999999999999887643
No 138
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.91 E-value=1.3e-24 Score=155.75 Aligned_cols=165 Identities=15% Similarity=0.136 Sum_probs=94.8
Q ss_pred ccceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------cCcceeeeEEEEEEECCcEEEEEEecCCChhhh------
Q 029929 5 RRMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------ 70 (185)
Q Consensus 5 ~~~~~~i~viG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------ 70 (185)
+...++|+|+|.+|+|||||+|+|++....... .++.+.+.....+..++..+.+++|||||....
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 456799999999999999999998876654332 445555555555554555579999999996322
Q ss_pred -cccc-------cchh-------------ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 71 -QSLG-------VAFY-------------RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 71 -~~~~-------~~~~-------------~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
.... ..++ ..+|+++++++.+.......-..++..+. . ++|+++|+||+|+
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~----~----~~pvi~V~nK~D~ 156 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH----E----KVNIIPLIAKADT 156 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT----T----TSCEEEEESSGGG
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh----c----cCCEEEEEeccCC
Confidence 1111 2222 23789999997765222122133334332 2 5799999999998
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
..........+.+.......+ ++++++|+.+++|+.+++++|.+.++.
T Consensus 157 ~~~~e~~~~~~~i~~~l~~~~-i~v~~~sa~~~~~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 157 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLPL 204 (274)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCCCC-----------CHHHHHTCSE
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence 754333333344555555555 889999999999999999999887653
No 139
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.91 E-value=2.5e-23 Score=150.64 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=108.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChh---------hhcccccc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVA 76 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~ 76 (185)
+..+|+++|++|+|||||++++++..+.. ...+.++.......+.. ....+.+|||||+. .+......
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 34689999999999999999999887532 22232332222222322 34688999999976 23444566
Q ss_pred hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
+++.+|++++|+|+++. + ....+..... .. .+.|+++++||+|+... .....+.+..+....+...+++
T Consensus 85 ~l~~~D~vl~Vvd~~~~-~--~~~~~i~~~l---~~---~~~P~ilvlNK~D~~~~--~~~~~~~l~~l~~~~~~~~~i~ 153 (301)
T 1ega_A 85 SIGDVELVIFVVEGTRW-T--PDDEMVLNKL---RE---GKAPVILAVNKVDNVQE--KADLLPHLQFLASQMNFLDIVP 153 (301)
T ss_dssp CCCCEEEEEEEEETTCC-C--HHHHHHHHHH---HS---SSSCEEEEEESTTTCCC--HHHHHHHHHHHHTTSCCSEEEE
T ss_pred HHhcCCEEEEEEeCCCC-C--HHHHHHHHHH---Hh---cCCCEEEEEECcccCcc--HHHHHHHHHHHHHhcCcCceEE
Confidence 78899999999999762 2 2122222211 11 26799999999999762 2233344555544455347999
Q ss_pred eeeccCCCHHHHHHHHHHHHhhcC
Q 029929 157 TSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+||+++.|+++++++|.+.++...
T Consensus 154 iSA~~g~~v~~l~~~i~~~l~~~~ 177 (301)
T 1ega_A 154 ISAETGLNVDTIAAIVRKHLPEAT 177 (301)
T ss_dssp CCTTTTTTHHHHHHHHHTTCCBCC
T ss_pred EECCCCCCHHHHHHHHHHhCCcCC
Confidence 999999999999999998776543
No 140
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.91 E-value=3.4e-23 Score=161.06 Aligned_cols=163 Identities=17% Similarity=0.212 Sum_probs=113.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC--CC-------------CccCcceeee--EEEEEEE-CCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SN-------------QYKATIGADF--LTKEVQF-EDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~-------------~~~~~~~~~~--~~~~~~~-~~~~~~~~~~D~~g~ 67 (185)
.+..+|+++|+.++|||||+++|+.... .. ....+.+... ....+.. ++..+.+++|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4568999999999999999999975311 10 0011111111 1122221 455689999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHH
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCA 147 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~ 147 (185)
.+|...+..+++.+|++|+|+|+++..+......|..... .++|+++|+||+|+.... ..+...++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~--------~~ipiIvviNKiDl~~a~----~~~v~~el~~ 151 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE--------QDLVIIPVINKIDLPSAD----VDRVKKQIEE 151 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH--------TTCEEEEEEECTTSTTCC----HHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH--------CCCCEEEEEeccCccccC----HHHHHHHHHH
Confidence 9999988899999999999999999877776666655432 167999999999998642 1222333444
Q ss_pred hcCC--CcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 148 SKGN--IPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 148 ~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
..+. .+++++||++|.|+++++++|.+.++...
T Consensus 152 ~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 152 VLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp TSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred hhCCCcccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 3431 25899999999999999999999887654
No 141
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.91 E-value=1.7e-23 Score=158.62 Aligned_cols=156 Identities=18% Similarity=0.168 Sum_probs=104.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|++++|||||+++|+.... .....++.+.+.....+ ..
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~--~~ 92 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYF--ET 92 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEE--ec
Confidence 4568999999999999999999954321 11112334444444444 34
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNKT 127 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 127 (185)
....+++|||||+.++...+..+++.+|++|+|+|+++... ++ .....+.... . .++| +++++||+
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~----~---~~v~~iIvviNK~ 165 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAK----T---AGVKHLIVLINKM 165 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHH----H---cCCCeEEEEeecC
Confidence 45689999999999999999999999999999999997532 11 1111111111 1 1556 89999999
Q ss_pred CCCCCCc----eeecHHHHHHHHHhcC-----CCcEEEeeeccCCCHHHHHH
Q 029929 128 DVDGGNS----RVVSEKKAKAWCASKG-----NIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 128 Dl~~~~~----~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~~~~ 170 (185)
|+...+. .+...+++..++...+ .++++++||++|.|+.++.+
T Consensus 166 Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 166 DDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9964321 2223344444544433 36899999999999999654
No 142
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.91 E-value=4e-23 Score=156.85 Aligned_cols=154 Identities=21% Similarity=0.300 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh---------hcccccchh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER---------FQSLGVAFY 78 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~---------~~~~~~~~~ 78 (185)
.+|+++|.+|+|||||+|+|++.... ....++++.+.....+...+. .+.+|||||... +......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987643 344566666666666666654 678999999653 234456678
Q ss_pred ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH-HHHHHhcCCCcEE
Q 029929 79 RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA-KAWCASKGNIPYF 155 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~-~~~~~~~~~~~~~ 155 (185)
+.+|++++|+|+.+..+... +..|+... ++|+++|+||+|+... . .... ..+. ..+..+++
T Consensus 80 ~~ad~il~V~D~~~~~~~~d~~i~~~l~~~----------~~p~ilv~NK~D~~~~----~-~~~~~~~~~-~lg~~~~~ 143 (439)
T 1mky_A 80 READLVLFVVDGKRGITKEDESLADFLRKS----------TVDTILVANKAENLRE----F-EREVKPELY-SLGFGEPI 143 (439)
T ss_dssp TTCSEEEEEEETTTCCCHHHHHHHHHHHHH----------TCCEEEEEESCCSHHH----H-HHHTHHHHG-GGSSCSCE
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHHHHHc----------CCCEEEEEeCCCCccc----c-HHHHHHHHH-hcCCCCEE
Confidence 99999999999987544432 22333221 6799999999997531 1 1222 3333 34533789
Q ss_pred EeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 156 ETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
++||++|.|+.+++++|.+.+++..
T Consensus 144 ~iSA~~g~gv~~L~~~i~~~l~~~~ 168 (439)
T 1mky_A 144 PVSAEHNINLDTMLETIIKKLEEKG 168 (439)
T ss_dssp ECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCCHHHHHHHHHHhccccc
Confidence 9999999999999999999998543
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.90 E-value=8.3e-23 Score=151.10 Aligned_cols=165 Identities=19% Similarity=0.101 Sum_probs=108.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChh---------hhcccccchhcc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE---------RFQSLGVAFYRG 80 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~~~~~~ 80 (185)
.|+++|++|||||||++++++........++.+.+.....+.+++ ..+.+|||+|.- .+... ...+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~~~~~ 257 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LSEAKY 257 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HHGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HHHHHh
Confidence 399999999999999999998876544455566666667777776 467899999952 12222 234688
Q ss_pred CcEEEEEEECCChh--hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEE
Q 029929 81 ADCCVLVYDVNVMK--SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFE 156 (185)
Q Consensus 81 ~d~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 156 (185)
+|++++|+|++++. ..+....+...+.... ..+.|+++|+||+|+.+.. .......+..+.... ...++++
T Consensus 258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~----~~~~p~ilV~NK~Dl~~~~-~~~~~~~~~~l~~~l~~~~~~~~~ 332 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETLQSSFEILREIG----VSGKPILVTLNKIDKINGD-LYKKLDLVEKLSKELYSPIFDVIP 332 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT----CCSCCEEEEEECGGGCCSC-HHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred CCEEEEEEECCCCcchHHHHHHHHHHHHHHhC----cCCCCEEEEEECCCCCCch-HHHHHHHHHHHHHHhcCCCCcEEE
Confidence 99999999999876 4555444444443322 1267999999999997542 111112232233333 2247899
Q ss_pred eeeccCCCHHHHHHHHHHHHhhcCCc
Q 029929 157 TSAKEGFNVEAAFECIAKNALKNEPQ 182 (185)
Q Consensus 157 ~s~~~~~~i~~~~~~i~~~~~~~~~~ 182 (185)
+||+++.|+++++++|.+.+......
T Consensus 333 ~SA~~g~gi~~L~~~I~~~l~~~~~~ 358 (364)
T 2qtf_A 333 ISALKRTNLELLRDKIYQLATQLSLE 358 (364)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred EECCCCcCHHHHHHHHHHHhcccCCC
Confidence 99999999999999999988766543
No 144
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.90 E-value=7.4e-24 Score=160.88 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=104.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccc--------cch
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------VAF 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~ 77 (185)
..++|+++|++|+|||||+|+|++.... ....++++.+.....+.+++ ..+.+|||||...+.... ..+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 3589999999999999999999986543 33445555555444555554 567899999976544322 335
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
+..+|++++|+|++++.+... ..++..+ . ..|+++|+||+|+....... ....+ ....+++++
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~-----~~piivV~NK~Dl~~~~~~~----~~~~~---~~~~~~i~i 363 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD-QEIYEQV----K-----HRPLILVMNKIDLVEKQLIT----SLEYP---ENITQIVHT 363 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH-HHHHHHH----T-----TSCEEEEEECTTSSCGGGST----TCCCC---TTCCCEEEE
T ss_pred hhcCCEEEEEeccCCCCCHHH-HHHHHhc----c-----CCcEEEEEECCCCCcchhhH----HHHHh---ccCCcEEEE
Confidence 788999999999998766554 3444433 2 35999999999997642211 11111 124689999
Q ss_pred eeccCCCHHHHHHHHHHHHhhcC
Q 029929 158 SAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
||++|.|+++++++|.+.+....
T Consensus 364 SAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 364 AAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BTTTTBSHHHHHHHHHHHHTTSS
T ss_pred ECCCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999987654
No 145
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.90 E-value=8.5e-26 Score=173.57 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=115.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVL 86 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~ 86 (185)
++++|+++|++++|||||+++|.+..+.....++.+.++....+...+ ...++||||||++.|..++..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 457899999999999999999987765544455555544433333322 2368899999999999999999999999999
Q ss_pred EEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHH---Hhc-CCCcEEEeeeccC
Q 029929 87 VYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWC---ASK-GNIPYFETSAKEG 162 (185)
Q Consensus 87 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~s~~~~ 162 (185)
|+|+++.........+ ..+. . .++|+++++||+|+........ ...+.... ... +.++++++||++|
T Consensus 82 VVDa~dg~~~qt~e~l-~~~~----~---~~vPiIVViNKiDl~~~~~~~v-~~~l~~~~~~~e~~~~~~~iv~vSAktG 152 (537)
T 3izy_P 82 VVAADDGVMKQTVESI-QHAK----D---AHVPIVLAINKCDKAEADPEKV-KKELLAYDVVCEDYGGDVQAVHVSALTG 152 (537)
T ss_dssp ECBSSSCCCHHHHHHH-HHHH----T---TTCCEEECCBSGGGTTTSCCSS-SSHHHHTTSCCCCSSSSEEECCCCSSSS
T ss_pred EEECCCCccHHHHHHH-HHHH----H---cCCcEEEEEecccccccchHHH-HHHHHhhhhhHHhcCCCceEEEEECCCC
Confidence 9999986555443332 2221 1 1679999999999976432222 22222211 111 2358999999999
Q ss_pred CCHHHHHHHHHHHHhh
Q 029929 163 FNVEAAFECIAKNALK 178 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~ 178 (185)
.|+++++++|...+..
T Consensus 153 ~GI~eLle~I~~l~~~ 168 (537)
T 3izy_P 153 ENMMALAEATIALAEM 168 (537)
T ss_dssp CSSHHHHHHHHHHHTT
T ss_pred CCchhHHHHHHHhhhc
Confidence 9999999999988753
No 146
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=142.39 Aligned_cols=167 Identities=16% Similarity=0.171 Sum_probs=105.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC--cceeeeEEEEEEECCcEEEEEEecCCCh-----------hhhcc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA--TIGADFLTKEVQFEDRLFTLQIWDTAGQ-----------ERFQS 72 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~ 72 (185)
...++|+|+|.+|+|||||++++++........+ +.+...........+ ..+.+|||||. ..+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 4569999999999999999999999887655444 344444444555544 57889999993 23444
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceee----cHHHHHHHHHh
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVV----SEKKAKAWCAS 148 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~----~~~~~~~~~~~ 148 (185)
....+++.+|++|+|+|++.....+ ..++..+...+... ...|+++|+||+|+........ ..+.++.+...
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence 4445567789999999987633321 22223332211110 0348999999999876422211 12356667676
Q ss_pred cCCCcEEEeeeccC-----CCHHHHHHHHHHHHhhc
Q 029929 149 KGNIPYFETSAKEG-----FNVEAAFECIAKNALKN 179 (185)
Q Consensus 149 ~~~~~~~~~s~~~~-----~~i~~~~~~i~~~~~~~ 179 (185)
.+ ..++.+++..+ .++.+++..+.+.+..+
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~ 215 (239)
T 3lxx_A 181 FG-DRYCALNNKATGAEQEAQRAQLLGLIQRVVREN 215 (239)
T ss_dssp HS-SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cC-CEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence 66 56777766643 68999999998888664
No 147
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.90 E-value=1.1e-23 Score=158.46 Aligned_cols=165 Identities=16% Similarity=0.115 Sum_probs=113.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC--------CCCCC--c-----cCcceeeeEEEEEEECCcEEEEEEecCCChhhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR--------KFSNQ--Y-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF 70 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~--------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~ 70 (185)
...++|+++|++++|||||+++|++. .+... . ....+.+.......+......+.+|||||+.++
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 45689999999999999999999873 11110 0 001222222233344444568899999999999
Q ss_pred cccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHh
Q 029929 71 QSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCAS 148 (185)
Q Consensus 71 ~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~ 148 (185)
...+..+++.+|++|+|+|+++...... ..++..+... ++| +++++||+|+..... .+...+++..++..
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~~-------~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQV-------GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHHT-------TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHHc-------CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 8888889999999999999988654333 3444433321 567 889999999985211 11223455566655
Q ss_pred cC----CCcEEEeeeccCCC------------------HHHHHHHHHHHHhh
Q 029929 149 KG----NIPYFETSAKEGFN------------------VEAAFECIAKNALK 178 (185)
Q Consensus 149 ~~----~~~~~~~s~~~~~~------------------i~~~~~~i~~~~~~ 178 (185)
.+ .++++++||++|.| +.++++.|...++.
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred hcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 54 37899999999987 78888888877763
No 148
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.90 E-value=2.1e-23 Score=156.48 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=111.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC-------CCCC-------ccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRK-------FSNQ-------YKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS 72 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~ 72 (185)
..++|+++|+.++|||||+++|++.. +... .....+.+.......+......+.+|||||+.++..
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 35899999999999999999998631 1100 000112222223334444556889999999999988
Q ss_pred cccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhcC
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASKG 150 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~ 150 (185)
.+..+++.+|++|+|+|+++.........+ ..+.. .++| +++++||+|+..... .+...+++.+++...+
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~-------~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~ 153 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ-------IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFG 153 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH-------TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH-------cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcC
Confidence 888889999999999999985443332222 22221 1567 689999999985211 1223345666666554
Q ss_pred ----CCcEEEeeeccCCC----------HHHHHHHHHHHHhh
Q 029929 151 ----NIPYFETSAKEGFN----------VEAAFECIAKNALK 178 (185)
Q Consensus 151 ----~~~~~~~s~~~~~~----------i~~~~~~i~~~~~~ 178 (185)
.++++++||++|.| +.++++.|.+.++.
T Consensus 154 ~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 154 YKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp SCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred CCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 36999999999764 88999999887764
No 149
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.90 E-value=1.1e-22 Score=144.73 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=106.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCc-ceeeeEEEEEEECCcEEEEEEecCCChhhhcccc---------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKAT-IGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLG--------- 74 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------- 74 (185)
...++|+|+|.+|+|||||++++++... .....++ .+...........+ ..+.+|||||+..+....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 3568999999999999999999998773 3333343 34444444444443 578999999976543222
Q ss_pred --cchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe-CCCCCCCCceeecH-------HHHHH
Q 029929 75 --VAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGN-KTDVDGGNSRVVSE-------KKAKA 144 (185)
Q Consensus 75 --~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n-K~Dl~~~~~~~~~~-------~~~~~ 144 (185)
..+++.+|++|+|+|++...... ..++..+...+... ...|.++++| |+|+.... ... ..+..
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~ 170 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLGRYTSQD--QQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSK 170 (260)
T ss_dssp HHHHHTTCCSEEEEEEETTCCCHHH--HHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHH
T ss_pred HHHhcCCCCcEEEEEEeCCCCCHHH--HHHHHHHHHHhCch--hhccEEEEEEcccccCCcc---HHHHHHhcchHHHHH
Confidence 22568899999999998622221 22223333322211 1346777776 99998431 111 22344
Q ss_pred HHHhcCCC--cE--EEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 145 WCASKGNI--PY--FETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 145 ~~~~~~~~--~~--~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+....+.. .+ +++||+++.|+++++++|.+.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 171 LVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp HHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 44444311 12 78999999999999999999988654
No 150
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=2.4e-23 Score=146.91 Aligned_cols=170 Identities=15% Similarity=0.162 Sum_probs=106.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCc--ceeeeEEEEEEECCcEEEEEEecCCCh--------hhhccccc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKAT--IGADFLTKEVQFEDRLFTLQIWDTAGQ--------ERFQSLGV 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~g~--------~~~~~~~~ 75 (185)
...++|+++|.+|+|||||+|++++........++ .+........... ...+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD--KCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEET--TEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC--CcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 45699999999999999999999998866433333 2333333334444 467889999995 33333333
Q ss_pred chh----ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec----HHHHHHHHH
Q 029929 76 AFY----RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS----EKKAKAWCA 147 (185)
Q Consensus 76 ~~~----~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~----~~~~~~~~~ 147 (185)
.++ +.+|++|+|+|++.....+ ..++..+...+.. ...+.|+++++||+|+......+.. .+.+..+..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~--~~~~~~l~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQD--QQAVRQVRDMFGE-DVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHH--HHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHH--HHHHHHHHHHhCh-hhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHH
Confidence 333 8999999999998532211 2233333333221 1125699999999999764211111 134566666
Q ss_pred hcCCCcEEEeeecc-----CCCHHHHHHHHHHHHhhcCC
Q 029929 148 SKGNIPYFETSAKE-----GFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 148 ~~~~~~~~~~s~~~-----~~~i~~~~~~i~~~~~~~~~ 181 (185)
..+ ..++.+++.. +.|+.++++.|.+.+..+.+
T Consensus 174 ~~g-~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~~~ 211 (247)
T 3lxw_A 174 ECG-GRVCAFDNRATGREQEAQVEQLLGMVEGLVLEHKG 211 (247)
T ss_dssp HTT-TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HcC-CeEEEEeCCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence 665 5666666554 58999999999999886543
No 151
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.90 E-value=3.9e-23 Score=161.05 Aligned_cols=162 Identities=22% Similarity=0.225 Sum_probs=106.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEEC----------------CcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFE----------------DRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~D~~g~~~ 69 (185)
.+.++|+++|++++|||||+++|.+..+........+.+......... .....+++|||||+..
T Consensus 3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 356899999999999999999998765432211111111111111110 1112589999999999
Q ss_pred hcccccchhccCcEEEEEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee----------
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV---------- 136 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~---------- 136 (185)
|..++..+++.+|++|+|+|+++ +.+++.+.. +.. .++|+++++||+|+.......
T Consensus 83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~-------~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM-------YRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH-------TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH-------cCCeEEEEecccccccccccccCCchHHHHH
Confidence 99999989999999999999998 566554432 111 167999999999997531100
Q ss_pred ----ecHH-------HHHHHHHhc--------------CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 137 ----VSEK-------KAKAWCASK--------------GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 137 ----~~~~-------~~~~~~~~~--------------~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
...+ +........ ..++++++||++|.|+.+++++|...++.
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0000 111111111 22489999999999999999999988764
No 152
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.90 E-value=1.2e-22 Score=154.17 Aligned_cols=162 Identities=22% Similarity=0.188 Sum_probs=106.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhccc------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSL------------ 73 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------------ 73 (185)
..++|+++|++|||||||++++++.... ....++++.+.....+.+++. .+.+|||+|.......
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4589999999999999999999987642 333455555555556666664 5789999996433221
Q ss_pred ccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH-HHH---hc
Q 029929 74 GVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WCA---SK 149 (185)
Q Consensus 74 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~~---~~ 149 (185)
...+++.+|++++|+|+.+..+.... .+...+.. .+.|+++|+||+|+.... ....++... +.. ..
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~-------~~~~~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER-------RGRASVVVFNKWDLVVHR--EKRYDEFTKLFREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH-------TTCEEEEEEECGGGSTTG--GGCHHHHHHHHHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH-------cCCCEEEEEECccCCCch--hhHHHHHHHHHHHHhccC
Confidence 12356789999999999876555432 22222221 167999999999997642 222222221 112 23
Q ss_pred CCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 150 GNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 150 ~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
..++++++||++|.|++++++.+.+.+....
T Consensus 327 ~~~~~~~~SA~~g~gv~~l~~~i~~~~~~~~ 357 (439)
T 1mky_A 327 DYSPLIFTSADKGWNIDRMIDAMNLAYASYT 357 (439)
T ss_dssp TTSCEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 4579999999999999999999998876543
No 153
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.89 E-value=2.4e-23 Score=157.97 Aligned_cols=154 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChh--------hhcccccchhc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQE--------RFQSLGVAFYR 79 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~~ 79 (185)
++|+++|.+|+|||||+|+|++.... ....++.+.+...... ...+..+.+|||||+. .+......+++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~--~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSA--EWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEEC--TTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEE--EECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 68999999999999999999987654 2233344334333333 3334578999999975 45666677889
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeee
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSA 159 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 159 (185)
.+|++|+|+|+.++.+... .++..+. .. .++|+++|+||+|+....... .++. ..+..+++++||
T Consensus 82 ~ad~il~vvD~~~~~~~~d--~~~~~~l---~~---~~~pvilv~NK~D~~~~~~~~------~~~~-~lg~~~~~~iSA 146 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEMRANI------YDFY-SLGFGEPYPISG 146 (436)
T ss_dssp HCSEEEEEEETTTCSCHHH--HHHHHHH---TT---CCSCEEEEEECCCC-----CC------CSSG-GGSSCCCEECBT
T ss_pred hCCEEEEEEeCCCCCCHHH--HHHHHHH---HH---cCCCEEEEEECccCccchhhH------HHHH-HcCCCCeEEEeC
Confidence 9999999999998666543 2222222 22 267999999999987532111 1111 233237899999
Q ss_pred ccCCCHHHHHHHHHHHHhhc
Q 029929 160 KEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~~~~~ 179 (185)
++|.|+.++++++.+.+++.
T Consensus 147 ~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 147 THGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp TTTBTHHHHHHHHHHTGGGC
T ss_pred cCCCChHHHHHHHHHhcCcc
Confidence 99999999999999988754
No 154
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.2e-23 Score=143.19 Aligned_cols=118 Identities=15% Similarity=0.193 Sum_probs=87.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC---CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhcc--
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN---QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRG-- 80 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-- 80 (185)
...++|+++|++|+|||||++++.+..+.. ...++.+.++ ....+.+|||||+..+...+..++..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 116 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA 116 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC---------CCTTCSEEEETTCCBSSCCHHHHHHHHG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee---------cCCeEEEEECCCCchHHHHHHHHHHhhc
Confidence 456899999999999999999999887543 2222222111 34578899999998887777777765
Q ss_pred --CcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 81 --ADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 81 --~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
+|++++|+|++ +++++..+..|+..+..........+.|+++|+||+|+...
T Consensus 117 ~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 117 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp GGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred ccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 89999999999 88999888888777765432111236799999999999865
No 155
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.89 E-value=3.3e-23 Score=159.66 Aligned_cols=117 Identities=17% Similarity=0.192 Sum_probs=82.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------------CccCcceeeeEEEEEEECCcEEEEEEec
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------------QYKATIGADFLTKEVQFEDRLFTLQIWD 63 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (185)
.+..+|+++|++|+|||||+++|+...... ...++.+.......+.. ..+.+++||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~--~~~~i~liD 88 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY--KDYLINLLD 88 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE--TTEEEEEEC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe--CCEEEEEEE
Confidence 356899999999999999999996221100 00112222222333333 347899999
Q ss_pred CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|||+.++......+++.+|++|+|+|+++..+.....-| ..+.. . ++|+++|+||+|+...
T Consensus 89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~~----~---~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCRL----R---HTPIMTFINKMDRDTR 149 (528)
T ss_dssp CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHHT----T---TCCEEEEEECTTSCCS
T ss_pred CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHH----c---CCCEEEEEeCCCCccc
Confidence 999999999999999999999999999986666554333 32221 1 6799999999999754
No 156
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.89 E-value=2.6e-23 Score=152.93 Aligned_cols=123 Identities=15% Similarity=0.175 Sum_probs=96.6
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 125 (185)
.+.+.+||++|++.++..|..+++.++++|+|+|+++ ..+++....|+..+.... ...++|+++++|
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~---~~~~~piiLv~N 268 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNK---WFTDTSIILFLN 268 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCc---cccCCcEEEEEE
Confidence 5789999999999999999999999999999999998 456777777777765431 223689999999
Q ss_pred CCCCCCCC-------------ceeecHHHHHHHHHh----------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 126 KTDVDGGN-------------SRVVSEKKAKAWCAS----------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 126 K~Dl~~~~-------------~~~~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
|+|+.... ......+++..++.. ...+.+++|||+++.|++++|+++.+.+...+.
T Consensus 269 K~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~l 347 (353)
T 1cip_A 269 KKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNNL 347 (353)
T ss_dssp CHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred CcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHHH
Confidence 99985310 012456677776652 234788999999999999999999999987653
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.89 E-value=1.1e-24 Score=165.04 Aligned_cols=160 Identities=16% Similarity=0.218 Sum_probs=105.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC--CCCCC-----------------------------ccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSNQ-----------------------------YKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|+.++|||||+++|+.. .+... ..++.+.+.. ...+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~--~~~~~~ 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT--FMRFET 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-------------CEEEC
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee--EEEEec
Confidence 35689999999999999999999864 22110 0122222222 223344
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN 133 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~ 133 (185)
....+++|||||+.++...+..+++.+|++|+|+|+++ .+++....|..+..++.......+. |+++++||+|+.+..
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 160 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPP 160 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcc
Confidence 45689999999999999988899999999999999998 6666543332222222111101133 689999999998632
Q ss_pred c----eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929 134 S----RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 134 ~----~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~ 168 (185)
. .+...+++..++...+ .++++++||++|.|+.++
T Consensus 161 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 161 YDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 1 1233455666666554 378999999999999754
No 158
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.89 E-value=3.4e-23 Score=158.85 Aligned_cols=158 Identities=19% Similarity=0.201 Sum_probs=98.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-------------------------------CCccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-------------------------------NQYKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|.+|+|||||+++|+..... ....++.+.+... ..+..
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~--~~~~~ 108 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICT--SHFST 108 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCE--EEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeee--EEEec
Confidence 34699999999999999999999755111 1111222333323 33344
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHH--HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNL--NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
..+.+.+|||||++.+...+..+++.+|++|+|+|+++.++...+ ..+.......+...+ ..|+++|+||+|+.+.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~~ 186 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVDW 186 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGTT
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCcccc
Confidence 557899999999999999999999999999999999986433221 011111111111111 2369999999999863
Q ss_pred Cc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHH
Q 029929 133 NS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEA 167 (185)
Q Consensus 133 ~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~ 167 (185)
.. .+...+++..+....+ .++++++||++|.|+.+
T Consensus 187 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 187 SQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 21 1112333444443332 36899999999999874
No 159
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.89 E-value=5.1e-23 Score=152.62 Aligned_cols=149 Identities=14% Similarity=0.038 Sum_probs=105.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEE
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYD 89 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d 89 (185)
+|+++|++++|||||+++|+ ....+.+..... +......+++|||||+.++.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~--~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYN--NDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEE--ECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEE--EecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 99999999999999999998 222222332333 33344579999999999998888888899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe-CCCCCCCCceeecHHHHHHHHHhc--CCCcEEE--eeecc--
Q 029929 90 VNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN-KTDVDGGNSRVVSEKKAKAWCASK--GNIPYFE--TSAKE-- 161 (185)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~s~~~-- 161 (185)
+. ........++..+... ++|. ++++| |+|+ +....+...+++.+++... ..+++++ +||++
T Consensus 93 -~~-g~~~qt~e~~~~~~~~-------~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~ 162 (370)
T 2elf_A 93 -PQ-GLDAHTGECIIALDLL-------GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKN 162 (370)
T ss_dssp -TT-CCCHHHHHHHHHHHHT-------TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSS
T ss_pred -CC-CCcHHHHHHHHHHHHc-------CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCc
Confidence 54 2333334444433221 5677 89999 9999 4311111224555555443 2478999 99999
Q ss_pred -CCCHHHHHHHHHHHHhh
Q 029929 162 -GFNVEAAFECIAKNALK 178 (185)
Q Consensus 162 -~~~i~~~~~~i~~~~~~ 178 (185)
+.|++++++.|.+.++.
T Consensus 163 ~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 163 PFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhccc
Confidence 99999999999988764
No 160
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.88 E-value=2.7e-24 Score=164.02 Aligned_cols=157 Identities=22% Similarity=0.236 Sum_probs=107.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEE
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCV 85 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 85 (185)
.++++|+++|+.++|||||+++|.+..+.....++.+.+.....+..+ ...++||||||+..|..++...+..+|++|
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 356899999999999999999998765443333333333322222222 347889999999999999999999999999
Q ss_pred EEEECCC---hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHH--HHHHHHHhc-CCCcEEEeee
Q 029929 86 LVYDVNV---MKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEK--KAKAWCASK-GNIPYFETSA 159 (185)
Q Consensus 86 ~v~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~s~ 159 (185)
+|+|+++ +.+.+.+. .... .++|+++++||+|+...+......+ ....+.... +.++++++||
T Consensus 80 LVVda~~g~~~qT~e~l~----~~~~-------~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSA 148 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAIQ----HAKA-------AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSA 148 (501)
T ss_dssp EEEETTTBSCTTTHHHHH----HHHH-------TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCT
T ss_pred EEeecccCccHHHHHHHH----HHHh-------cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEee
Confidence 9999988 44443332 1111 1679999999999975322111100 000000111 2368999999
Q ss_pred ccCCCHHHHHHHHHHH
Q 029929 160 KEGFNVEAAFECIAKN 175 (185)
Q Consensus 160 ~~~~~i~~~~~~i~~~ 175 (185)
++|.|+++++++|...
T Consensus 149 ktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 149 KAGTGIDELLDAILLQ 164 (501)
T ss_dssp TTCTTCTTHHHHTTTT
T ss_pred eeccCcchhhhhhhhh
Confidence 9999999999998753
No 161
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.88 E-value=1.1e-22 Score=147.63 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=94.7
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 124 (185)
..+.+.+||++|++.++..+..+++.++++|+|+|++ +.++++....|+..+... ....++|+++++
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~---~~~~~~~iiL~~ 241 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITY---PWFQNSSVILFL 241 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTS---GGGTTCEEEEEE
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhh---hccCCceEEEEE
Confidence 4578999999999999999999999999999999665 566777766666666532 223378999999
Q ss_pred eCCCCCCC--------------CceeecHHHHHHHHHh---------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 125 NKTDVDGG--------------NSRVVSEKKAKAWCAS---------KGNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 125 nK~Dl~~~--------------~~~~~~~~~~~~~~~~---------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
||+|+... .......+++.+++.. ...+.++++||+++.|++.+|..+.+.+.+++-
T Consensus 242 NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 242 NKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp ECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 99998532 0113456666666431 123567899999999999999999999987764
No 162
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.88 E-value=1.2e-22 Score=154.87 Aligned_cols=158 Identities=17% Similarity=0.147 Sum_probs=101.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCC--------hhhhcccccch
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAG--------QERFQSLGVAF 77 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~~~ 77 (185)
....+|+++|.+|+|||||+|+|++..... ...+.+.+..............+.+||||| +..+......+
T Consensus 21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~~~-v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 21 MGKPVVAIVGRPNVGKSTIFNRIAGERISI-VEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp --CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 345799999999999999999999876541 122233333333334444456889999999 66777778888
Q ss_pred hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEe
Q 029929 78 YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFET 157 (185)
Q Consensus 78 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (185)
++.+|++|+|+|+.+..+... .++..+. .. .++|+++|+||+|+..... ....+. ..+...++++
T Consensus 100 ~~~ad~il~VvD~~~~~~~~d--~~l~~~l---~~---~~~pvilV~NK~D~~~~~~------~~~e~~-~lg~~~~~~i 164 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVTAAD--EEVAKIL---YR---TKKPVVLAVNKLDNTEMRA------NIYDFY-SLGFGEPYPI 164 (456)
T ss_dssp HHHCSEEEEEEESSSCSCHHH--HHHHHHH---TT---CCSCEEEEEECC---------------CCSG-GGSSSSEEEC
T ss_pred HhhCCEEEEEEeCCCCCChHH--HHHHHHH---HH---cCCCEEEEEECccchhhhh------hHHHHH-HcCCCceEEe
Confidence 899999999999886433322 2222222 22 2679999999999874311 111111 2333467899
Q ss_pred eeccCCCHHHHHHHHHHHHhhc
Q 029929 158 SAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 158 s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
||++|.|+.++++++.+.+...
T Consensus 165 SA~~g~gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 165 SGTHGLGLGDLLDAVAEHFKNI 186 (456)
T ss_dssp CTTTCTTHHHHHHHHHTTGGGS
T ss_pred ecccccchHHHHHHHHhhcccc
Confidence 9999999999999999887654
No 163
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.88 E-value=1.5e-22 Score=153.51 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=102.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC--CC----------ccCcc-------------------eeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS--NQ----------YKATI-------------------GADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~--~~----------~~~~~-------------------~~~~~~~~~~~~~ 54 (185)
...++|+++|+.++|||||+++|+..... .. ..++. +.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 34589999999999999999999865411 00 00110 1111112222333
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVDGGN 133 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~~~~ 133 (185)
....+++|||||+..+...+..++..+|++|+|+|+++...... ..++..+.. . +. |+++|+||+|+.+..
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~~-~------~~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIASL-L------GIKHIVVAINKMDLNGFD 173 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHHH-T------TCCEEEEEEECTTTTTSC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH-c------CCCeEEEEEEcCcCCccc
Confidence 45688999999999998888889999999999999998543332 223332221 1 33 589999999998632
Q ss_pred ce--eecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929 134 SR--VVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 134 ~~--~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~ 168 (185)
.. ....+++..++...+ .++++++||++|.|+.++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11 123345556655544 268999999999999873
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.87 E-value=3.8e-22 Score=137.44 Aligned_cols=160 Identities=17% Similarity=0.144 Sum_probs=99.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----------hcccccc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----------FQSLGVA 76 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~~ 76 (185)
...+|+++|++|||||||++++++..+.....++.+.......+.+.+ .+.+|||||... +......
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 101 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE 101 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence 347899999999999999999988764333344444433333333333 467899999632 2222223
Q ss_pred hh---ccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcC-
Q 029929 77 FY---RGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKG- 150 (185)
Q Consensus 77 ~~---~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~- 150 (185)
++ ..++++++++|+.++.+... +..|+.. .+.|+++++||+|+.....++.....+..++....
T Consensus 102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~----------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~ 171 (210)
T 1pui_A 102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD----------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNG 171 (210)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH----------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCS
T ss_pred HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH----------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCC
Confidence 33 46899999999988655432 2222221 16789999999998764322222345555555443
Q ss_pred CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 151 NIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 151 ~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
.+.++++|++++.|+++++++|.+.+.+.
T Consensus 172 ~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 172 DVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 35788999999999999999999887654
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.87 E-value=7.2e-23 Score=151.56 Aligned_cols=164 Identities=16% Similarity=0.244 Sum_probs=86.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-Cc--------cCcceeeeEEEEEEECCcEEEEEEecCCCh-------hh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 69 (185)
...++|+|+|++|+|||||+++|++..... .. .++.+.......+...+....+++|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999987654332 11 133333333333344455678999999997 44
Q ss_pred hccccc-------chhcc-------------CcEEEEEEECCChhhHHHHH-HHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 70 FQSLGV-------AFYRG-------------ADCCVLVYDVNVMKSFDNLN-NWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 70 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
+..+.. .+++. +|+++|+++.. ..++..+. .++..+ . .++|+|+|+||+|
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~----~~~piIlV~NK~D 185 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----H----NKVNIVPVIAKAD 185 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----C----S-SCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----c----cCCCEEEEEECCC
Confidence 444443 44433 34566666542 22333332 233322 2 2679999999999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+..........+.+..++...+ ++++++||+++.+ ++.+.++.+.+...-
T Consensus 186 l~~~~ev~~~k~~i~~~~~~~~-i~~~~~Sa~~~~~-~e~~~~l~~~i~~~i 235 (361)
T 2qag_A 186 TLTLKERERLKKRILDEIEEHN-IKIYHLPDAESDE-DEDFKEQTRLLKASI 235 (361)
T ss_dssp SSCHHHHHHHHHHHHHHTTCC--CCSCCCC----------CHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHHCC-CCEEeCCCcCCCc-chhHHHHHHHHHhcC
Confidence 9864222222245555555555 8999999999998 888888887776543
No 166
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.87 E-value=5.1e-22 Score=146.03 Aligned_cols=123 Identities=13% Similarity=0.147 Sum_probs=91.9
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEE
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVLG 124 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~ 124 (185)
..+.+.+|||+|++.++..+..+++.++++|+|+|++ +.++++....|+..+.... ...++|+++|+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~---~~~~~piiLvg 257 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQP---CFEKTSFMLFL 257 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCG---GGSSCEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhcc---ccCCCeEEEEE
Confidence 5688999999999999999999999999999999998 7788988888887775432 12378999999
Q ss_pred eCCCCCCCCc-------------------eeecHHHHHHHHHh---------------cCCCcEEEeeeccCCCHHHHHH
Q 029929 125 NKTDVDGGNS-------------------RVVSEKKAKAWCAS---------------KGNIPYFETSAKEGFNVEAAFE 170 (185)
Q Consensus 125 nK~Dl~~~~~-------------------~~~~~~~~~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~ 170 (185)
||+|+..... .....++...++.. ...+.+++|||+++.|++++|+
T Consensus 258 NK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~ 337 (354)
T 2xtz_A 258 NKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFK 337 (354)
T ss_dssp ECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHH
T ss_pred ECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHH
Confidence 9999843200 00123455555332 1123468999999999999999
Q ss_pred HHHHHHhhcC
Q 029929 171 CIAKNALKNE 180 (185)
Q Consensus 171 ~i~~~~~~~~ 180 (185)
++.+.+..++
T Consensus 338 ~v~~~I~~~~ 347 (354)
T 2xtz_A 338 LVDETLRRRN 347 (354)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999887653
No 167
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.87 E-value=6.5e-22 Score=161.34 Aligned_cols=165 Identities=14% Similarity=0.078 Sum_probs=110.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC-------CCC-------CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK-------FSN-------QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
...++|+++|+.++|||||+++|++.. +.. ......+.+.....+.+......+++|||||+.++.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999998631 000 001122222222233344455688999999999999
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCCCCCc-eeecHHHHHHHHHhc
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVDGGNS-RVVSEKKAKAWCASK 149 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~~~~~-~~~~~~~~~~~~~~~ 149 (185)
..+..++..+|++|+|+|+++...... ..++..+... ++| +++++||+|+.+... .+...+++..+....
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l-------gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~ 445 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV-------GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQY 445 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH-------TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc-------CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhc
Confidence 888889999999999999998533322 2333333221 567 789999999985311 112334566666655
Q ss_pred C----CCcEEEeeeccC--------CCHHHHHHHHHHHHhh
Q 029929 150 G----NIPYFETSAKEG--------FNVEAAFECIAKNALK 178 (185)
Q Consensus 150 ~----~~~~~~~s~~~~--------~~i~~~~~~i~~~~~~ 178 (185)
+ .++++++||++| .|+.++++.|.+.++.
T Consensus 446 G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 446 DFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp TSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred cccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCC
Confidence 4 378999999999 4688999988887653
No 168
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.86 E-value=6.8e-22 Score=154.87 Aligned_cols=157 Identities=20% Similarity=0.208 Sum_probs=101.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc-------------------------------cCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQY-------------------------------KATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|++|+|||||+++|+........ .++++.+.....+. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~--~ 242 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFS--T 242 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEE--C
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEe--c
Confidence 34689999999999999999999866322111 12233333333333 3
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HHHHHHHHHHHHhhcCCCCCCCC-cEEEEEeCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FDNLNNWREEFLIQASPSDPENF-PFVVLGNKTDVD 130 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~Dl~ 130 (185)
....+++|||||+..+...+..+++.+|++|+|+|+++... +.........+.. .... ++ |+++|+||+|+.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~-~~~l---gi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLL-ASSL---GIHNLIIAMNKMDNV 318 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHH-HHTT---TCCEEEEEEECTTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHH-HHHc---CCCeEEEEEeccccc
Confidence 44688999999999999999999999999999999986420 0000011111111 1111 33 599999999998
Q ss_pred CCCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929 131 GGNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 131 ~~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~ 168 (185)
.... .....+.+..+....+ .++++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 6321 1122334444444433 368999999999999865
No 169
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.86 E-value=4.8e-23 Score=160.93 Aligned_cols=159 Identities=18% Similarity=0.194 Sum_probs=89.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC-------------------------------CCCccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF-------------------------------SNQYKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|++++|||||+++|+.... .....++++.+.... .+..
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~--~~~~ 252 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVAST--TFES 252 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEE--EEEe
Confidence 4568999999999999999999964210 011122333333322 2333
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCCh----------hhHHHHHHHHHHHHhhcCCCCCCCCc-EEEE
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVM----------KSFDNLNNWREEFLIQASPSDPENFP-FVVL 123 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv 123 (185)
....++||||||+..+...+..++..+|++|+|+|+++. .+.+.+ ..+. .. ++| +|+|
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~-~l------gip~iIvv 321 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLR-AL------GISEIVVS 321 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHH-HS------SCCCEEEE
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHH-Hc------CCCeEEEE
Confidence 456889999999999999999999999999999999853 222221 1111 11 455 8999
Q ss_pred EeCCCCCCCCc--eeecHHHHHHHH-HhcC----CCcEEEeeeccCCCHH--------------HHHHHHHHHHh
Q 029929 124 GNKTDVDGGNS--RVVSEKKAKAWC-ASKG----NIPYFETSAKEGFNVE--------------AAFECIAKNAL 177 (185)
Q Consensus 124 ~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~----~~~~~~~s~~~~~~i~--------------~~~~~i~~~~~ 177 (185)
+||+|+..... .....+++..+. ...+ .++++++||++|.|+. .+++.|...++
T Consensus 322 iNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 322 VNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred EeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 99999976321 122233444444 3333 2479999999999998 67777766554
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.86 E-value=9.6e-22 Score=149.75 Aligned_cols=154 Identities=18% Similarity=0.242 Sum_probs=102.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC--CCCC-----------------------------ccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSNQ-----------------------------YKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|++++|||||+++|+... +... ...+.+.+..... +..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~--~~~ 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWK--FET 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEE--EEC
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEE--Eec
Confidence 456999999999999999999998641 1100 0122222222222 334
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhh---HH---HHHHHHHHHHhhcCCCCCCCCc-EEEEEeCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKS---FD---NLNNWREEFLIQASPSDPENFP-FVVLGNKT 127 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~ 127 (185)
....+++|||||+..+...+..++..+|++|+|+|+++... |+ .....+.... . . ++| +++++||+
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~-~---~---~v~~iivviNK~ 155 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAF-T---L---GVRQLIVAVNKM 155 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHH-H---T---TCCEEEEEEECG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHH-H---c---CCCeEEEEEEcc
Confidence 45689999999999999988899999999999999997531 11 1112222111 1 1 455 89999999
Q ss_pred CCCCCCc--eeecHHHHHHHHHhcC----CCcEEEeeeccCCCHHHH
Q 029929 128 DVDGGNS--RVVSEKKAKAWCASKG----NIPYFETSAKEGFNVEAA 168 (185)
Q Consensus 128 Dl~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~s~~~~~~i~~~ 168 (185)
|+.+... .+...+++..++...+ .++++++||++|.|+.++
T Consensus 156 Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 156 DSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred ccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9984211 1223445555655554 278999999999998643
No 171
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.86 E-value=1.5e-22 Score=154.51 Aligned_cols=158 Identities=17% Similarity=0.201 Sum_probs=89.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC--CCC-----------------------------CccCcceeeeEEEEEEECC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--FSN-----------------------------QYKATIGADFLTKEVQFED 54 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 54 (185)
...++|+++|+.++|||||+++|+... +.. ....+.+.+.....+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-- 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-- 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC--
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec--
Confidence 346899999999999999999997421 100 00112222222222333
Q ss_pred cEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh---hHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeCCCCC
Q 029929 55 RLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK---SFDNLNNWREEFLIQASPSDPENFP-FVVLGNKTDVD 130 (185)
Q Consensus 55 ~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~Dl~ 130 (185)
....+++|||||+..|...+..++..+|++|+|+|+++.. +|+....+...+... .. .++| +++++||+|+.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~---~~vp~iivviNK~Dl~ 194 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA-RT---QGINHLVVVINKMDEP 194 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HH---TTCSSEEEEEECTTST
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HH---cCCCEEEEEEECccCC
Confidence 3468899999999999999999999999999999999852 222111111111111 01 1566 99999999996
Q ss_pred CCC----ceeecHHHHHHHHHhc-C-----CCcEEEeeeccCCCHHHHH
Q 029929 131 GGN----SRVVSEKKAKAWCASK-G-----NIPYFETSAKEGFNVEAAF 169 (185)
Q Consensus 131 ~~~----~~~~~~~~~~~~~~~~-~-----~~~~~~~s~~~~~~i~~~~ 169 (185)
... ..+...+++..++... + .++++++||++|.|+.+++
T Consensus 195 ~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 195 SVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp TCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 421 1122334455555544 2 3679999999999998754
No 172
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.85 E-value=1.7e-21 Score=143.75 Aligned_cols=122 Identities=12% Similarity=0.114 Sum_probs=88.0
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 125 (185)
.+.+.+|||+|++.++..+..+++.++++|+|+|+++ ..++.....|+..+.... ...++|+++++|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~---~~~~~piILv~N 276 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNR---VFSNVSIILFLN 276 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCG---GGTTSEEEEEEE
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcch---hhCCCCEEEEEE
Confidence 4789999999999999999999999999999999999 678888888877776431 123689999999
Q ss_pred CCCCCCCC--------------ceeecHHHHHHHHH----h------cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 126 KTDVDGGN--------------SRVVSEKKAKAWCA----S------KGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 126 K~Dl~~~~--------------~~~~~~~~~~~~~~----~------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
|+|+.... ......+++..++. . ...+.++++||+++.|++++|+++.+.+...+
T Consensus 277 K~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 277 KTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp CHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 99985310 01134566665541 1 12367899999999999999999999887653
No 173
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.85 E-value=5e-22 Score=143.88 Aligned_cols=161 Identities=15% Similarity=0.198 Sum_probs=99.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc------cCc----------------------ceee--------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY------KAT----------------------IGAD-------------- 44 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~------~~~----------------------~~~~-------------- 44 (185)
..++|+|+|.+|+|||||+++|++..+.+.. .|+ .+.+
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4579999999999999999999998764211 121 0000
Q ss_pred -------eEEEEEEEC-CcEEEEEEecCCChh-------------hhcccccchhccCcEEE-EEEECCChhhHHHHHHH
Q 029929 45 -------FLTKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGADCCV-LVYDVNVMKSFDNLNNW 102 (185)
Q Consensus 45 -------~~~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~~~~~~~~~ 102 (185)
.....+.+. .....+++|||||.. .+......+++.++.++ +|+|+++..+......+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000000000 012578999999953 34455667778888776 79999875433332233
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhc--CCCcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASK--GNIPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 103 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
...+ .. .+.|+++|+||+|+..... ...+.+....... +..+++++||++|.|+++++++|.+..
T Consensus 185 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 185 AKEV----DP---QGQRTIGVITKLDLMDEGT--DARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHH----CT---TCSSEEEEEECGGGSCTTC--CCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHh----CC---CCCeEEEEEEccccCCCCc--hHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 3333 22 2679999999999986422 1222221100011 224688999999999999999988743
No 174
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.84 E-value=1.6e-21 Score=142.11 Aligned_cols=122 Identities=14% Similarity=0.158 Sum_probs=92.4
Q ss_pred CcEEEEEEecCCChhhhcccccchhccCcEEEEEEECC----------ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEE
Q 029929 54 DRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVN----------VMKSFDNLNNWREEFLIQASPSDPENFPFVVL 123 (185)
Q Consensus 54 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv 123 (185)
...+.+.+||++|++.++..+..+++.++++|+|+|++ +.+++.....|+..+..... ..++|++++
T Consensus 158 ~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~---~~~~piiLv 234 (340)
T 4fid_A 158 VKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEF---LKGAVKLIF 234 (340)
T ss_dssp SSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGG---GTTSEEEEE
T ss_pred eeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhc---cCCCeEEEE
Confidence 34578899999999999999999999999999999998 67788887777777664322 237899999
Q ss_pred EeCCCCCCCC-------------ceeecHHHHHHHHH-hc-------------------------CCCcEEEeeeccCCC
Q 029929 124 GNKTDVDGGN-------------SRVVSEKKAKAWCA-SK-------------------------GNIPYFETSAKEGFN 164 (185)
Q Consensus 124 ~nK~Dl~~~~-------------~~~~~~~~~~~~~~-~~-------------------------~~~~~~~~s~~~~~~ 164 (185)
+||+|+.... ......+++.+++. .+ ..+.++++||+++.+
T Consensus 235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n 314 (340)
T 4fid_A 235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN 314 (340)
T ss_dssp EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence 9999985310 00012344433332 12 236688999999999
Q ss_pred HHHHHHHHHHHHhh
Q 029929 165 VEAAFECIAKNALK 178 (185)
Q Consensus 165 i~~~~~~i~~~~~~ 178 (185)
++.+|..+.+.+..
T Consensus 315 v~~vF~~v~~~Il~ 328 (340)
T 4fid_A 315 IKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998876
No 175
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.84 E-value=2.9e-20 Score=147.71 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=82.9
Q ss_pred cccceeEEEEEcCCCCCHHHHHHHHHhCCCC--------C----------CccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929 4 RRRMLLKVIILGDSGVGKTSLMNQYVNRKFS--------N----------QYKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (185)
Q Consensus 4 ~~~~~~~i~viG~~~~GKstli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (185)
...+..+|+++|+.|+|||||+++|+..... . ......+.......+.. ..+.+++||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~--~~~~i~liDTP 85 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW--KDHRINIIDTP 85 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE--TTEEEEEECCC
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE--CCeEEEEEECc
Confidence 3456799999999999999999999842110 0 00111222222222222 34789999999
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|+.++...+..+++.+|++|+|+|+++..+......|.. +... ++|+++|+||+|+...
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~~-------~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY-------KVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHT-------TCCEEEEEECTTSTTC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHHc-------CCCEEEEEECCCcccC
Confidence 999998889999999999999999998777666544433 2221 6799999999998754
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.84 E-value=4.4e-20 Score=138.30 Aligned_cols=163 Identities=18% Similarity=0.126 Sum_probs=111.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh----hcccccc---hhccCc
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER----FQSLGVA---FYRGAD 82 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~---~~~~~d 82 (185)
.|+++|++|||||||++++++........+..+.......+...+ ...+++||+||... ...+... ....++
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~ 237 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIARTR 237 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999988753322233333344444454443 24678999999632 1112222 235699
Q ss_pred EEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccC
Q 029929 83 CCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEG 162 (185)
Q Consensus 83 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 162 (185)
.+++++|++ ...+..+..+..++..+.... ...|.++++||+|+... ...+.+.......+ .+++.+||+++
T Consensus 238 ~lL~vvDls-~~~~~~ls~g~~el~~la~aL--~~~P~ILVlNKlDl~~~----~~~~~l~~~l~~~g-~~vi~iSA~~g 309 (416)
T 1udx_A 238 VLLYVLDAA-DEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEE----EAVKALADALAREG-LAVLPVSALTG 309 (416)
T ss_dssp EEEEEEETT-SCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCH----HHHHHHHHHHHTTT-SCEEECCTTTC
T ss_pred hhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh--hcCCEEEEEECCChhhH----HHHHHHHHHHHhcC-CeEEEEECCCc
Confidence 999999998 566677776666665542110 14589999999998752 23344444444444 78999999999
Q ss_pred CCHHHHHHHHHHHHhhcCC
Q 029929 163 FNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 163 ~~i~~~~~~i~~~~~~~~~ 181 (185)
+|+++++++|.+.+.....
T Consensus 310 ~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 310 AGLPALKEALHALVRSTPP 328 (416)
T ss_dssp TTHHHHHHHHHHHHHTSCC
T ss_pred cCHHHHHHHHHHHHHhccc
Confidence 9999999999999986654
No 177
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.83 E-value=2.8e-20 Score=143.55 Aligned_cols=119 Identities=20% Similarity=0.242 Sum_probs=79.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCC--------------------ccCcceeeeEEEEEEECCcEEEEEEecCC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQ--------------------YKATIGADFLTKEVQFEDRLFTLQIWDTA 65 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~ 65 (185)
...++|+++|++|+|||||+++|+....... ..+..+.+.......+....+.+++||||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 3568999999999999999999986421100 00011111111122233345789999999
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|+..+......+++.+|++|+|+|+++...... ..+...+... ++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-----~~~~~~~~~~---~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-----RKLMEVTRLR---DTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-----HHHHHHHTTT---TCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-----HHHHHHHHHc---CCCEEEEEcCcCCccc
Confidence 999998888889999999999999987543221 2222222222 6799999999999754
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.83 E-value=1.1e-19 Score=144.43 Aligned_cols=166 Identities=14% Similarity=0.179 Sum_probs=106.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeE--------------------------------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFL-------------------------------------- 46 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~-------------------------------------- 46 (185)
...++|+|+|.+|+|||||+|+|++....+ ...+++.....
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 356899999999999999999999887543 33333310000
Q ss_pred ---------------EEEEEECCcE--EEEEEecCCChhh---hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHH
Q 029929 47 ---------------TKEVQFEDRL--FTLQIWDTAGQER---FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEF 106 (185)
Q Consensus 47 ---------------~~~~~~~~~~--~~~~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~ 106 (185)
...+..+... ..+++|||||... .......+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0001111100 2588999999654 3345567788999999999999887776654443332
Q ss_pred HhhcCCCCCCCCcEEEEEeCCCCCCCC---cee--e---cHHHHHH----HHHhc--------CCCcEEEeeec------
Q 029929 107 LIQASPSDPENFPFVVLGNKTDVDGGN---SRV--V---SEKKAKA----WCASK--------GNIPYFETSAK------ 160 (185)
Q Consensus 107 ~~~~~~~~~~~~p~iiv~nK~Dl~~~~---~~~--~---~~~~~~~----~~~~~--------~~~~~~~~s~~------ 160 (185)
... +.|+++|+||+|+.... ... . ....+.. ..... ...+++++||+
T Consensus 227 ----~~~---~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~ 299 (695)
T 2j69_A 227 ----KGR---GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRR 299 (695)
T ss_dssp ----TTS---CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHH
T ss_pred ----Hhh---CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhh
Confidence 211 56899999999986532 000 0 0011211 11111 12479999999
Q ss_pred --------cCCCHHHHHHHHHHHHhh
Q 029929 161 --------EGFNVEAAFECIAKNALK 178 (185)
Q Consensus 161 --------~~~~i~~~~~~i~~~~~~ 178 (185)
++.|+.++++.|.+.+..
T Consensus 300 ~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 300 LKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp HHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred ccCchhhhhccCHHHHHHHHHHHHHH
Confidence 999999999999887754
No 179
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.82 E-value=1.1e-19 Score=135.14 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=92.8
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCC----------hhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEe
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNV----------MKSFDNLNNWREEFLIQASPSDPENFPFVVLGN 125 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~n 125 (185)
.+.+.+|||+|++.++..+..+++.++++|+|+|+++ .++++....|+..+.... ...++|+++|+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~---~~~~~piiLvgN 292 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNR---WLRTISVILFLN 292 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCT---TCSSCCEEEEEE
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcc---cCCCCeEEEEEE
Confidence 3789999999999999999999999999999999999 889999888888776432 223789999999
Q ss_pred CCCCCCCCc---e------------------------e-ecHHHHHHHH-----Hhc-------CCCcEEEeeeccCCCH
Q 029929 126 KTDVDGGNS---R------------------------V-VSEKKAKAWC-----ASK-------GNIPYFETSAKEGFNV 165 (185)
Q Consensus 126 K~Dl~~~~~---~------------------------~-~~~~~~~~~~-----~~~-------~~~~~~~~s~~~~~~i 165 (185)
|+|+..... . . ...+++..++ ... ..+.++++||+++.|+
T Consensus 293 K~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV 372 (402)
T 1azs_C 293 KQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENI 372 (402)
T ss_dssp CHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHH
T ss_pred ChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCH
Confidence 999843200 0 0 0134444442 211 2356789999999999
Q ss_pred HHHHHHHHHHHhhc
Q 029929 166 EAAFECIAKNALKN 179 (185)
Q Consensus 166 ~~~~~~i~~~~~~~ 179 (185)
+++|.++.+.+...
T Consensus 373 ~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 373 RRVFNDCRDIIQRM 386 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999888754
No 180
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.82 E-value=3.1e-19 Score=126.94 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=83.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhc-----
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYR----- 79 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 79 (185)
...++|+++|.+|+|||||++++++.... ....+..+.......+..++ ..+++|||||+.++......+++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 35699999999999999999999988753 22233333344444444443 58899999998777655444443
Q ss_pred ----cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 80 ----GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 80 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.+|++++|++++.......-..++..+...+... ...|+++|+||+|+...
T Consensus 112 l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKE--IWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECTTCCCS
T ss_pred HhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchh--hhcCEEEEEeCcccCCC
Confidence 7899999999876542222245666665543321 12389999999999643
No 181
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.82 E-value=2.5e-19 Score=141.92 Aligned_cols=117 Identities=16% Similarity=0.143 Sum_probs=80.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccC----------------cceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKA----------------TIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
....+|+++|+.|+|||||+++|........... ..+.++......+....+.+++|||||+.+
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3457999999999999999999985432210000 011222222233333457899999999999
Q ss_pred hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 70 FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 70 ~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+......+++.+|++++|+|+.+...... ..++..+... ++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~-------~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL-------GLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT-------TCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc-------cCCEEEEecCCchh
Confidence 98888999999999999999887544332 2333333321 67999999999987
No 182
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.81 E-value=3.2e-20 Score=135.38 Aligned_cols=164 Identities=12% Similarity=0.201 Sum_probs=96.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeee----EEE----------------------------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADF----LTK---------------------------------- 48 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~----~~~---------------------------------- 48 (185)
..++|+|+|.+|+|||||+|+|++..+.+......+... ...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 457999999999999999999999876322111000000 000
Q ss_pred -------------------EEE-ECCcEEEEEEecCCChhh-------------hcccccchhccCcEEEEEEECCChhh
Q 029929 49 -------------------EVQ-FEDRLFTLQIWDTAGQER-------------FQSLGVAFYRGADCCVLVYDVNVMKS 95 (185)
Q Consensus 49 -------------------~~~-~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~~ 95 (185)
.+. .......+.+|||||... +......++..+|++++|+|..+...
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 000 111224689999999643 44556677889999999999744221
Q ss_pred H-HHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEE---eeecc---CCCHHHH
Q 029929 96 F-DNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFE---TSAKE---GFNVEAA 168 (185)
Q Consensus 96 ~-~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~---~~~i~~~ 168 (185)
. .....+...+ .. .+.|+++|+||+|+..... ...+.+....... ...+++ +|+.+ +.|+.++
T Consensus 183 ~~~~~~~i~~~~----~~---~~~~~i~v~NK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~~v~~~sa~~~~~~~gv~~l 252 (315)
T 1jwy_B 183 ANSDALQLAKEV----DP---EGKRTIGVITKLDLMDKGT--DAMEVLTGRVIPL-TLGFIGVINRSQEDIIAKKSIRES 252 (315)
T ss_dssp TTCSHHHHHHHH----CS---SCSSEEEEEECTTSSCSSC--CCHHHHTTSSSCC-TTCEEECCCCCHHHHSSSCCHHHH
T ss_pred hhhHHHHHHHHh----CC---CCCcEEEEEcCcccCCcch--HHHHHHhCCCccC-CCCeEEEecCChhhhccCCCHHHH
Confidence 1 1111222222 22 2679999999999986532 1222222100111 134555 45555 8899999
Q ss_pred HHHHHHHHhhcC
Q 029929 169 FECIAKNALKNE 180 (185)
Q Consensus 169 ~~~i~~~~~~~~ 180 (185)
++.+.+.++...
T Consensus 253 ~~~~~~~~~~~~ 264 (315)
T 1jwy_B 253 LKSEILYFKNHP 264 (315)
T ss_dssp HHHHHHHHHTCT
T ss_pred HHHHHHHHhCCC
Confidence 999998887643
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.81 E-value=1.3e-18 Score=138.53 Aligned_cols=119 Identities=18% Similarity=0.118 Sum_probs=81.6
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC--CC-----------Cc-----cCcceeeeEEEEEEEC-----CcEEEEEEe
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF--SN-----------QY-----KATIGADFLTKEVQFE-----DRLFTLQIW 62 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~--~~-----------~~-----~~~~~~~~~~~~~~~~-----~~~~~~~~~ 62 (185)
.+..+|+++|+.|+|||||+++|+.... .. .. ....+.......+.+. +..+.+++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 4568999999999999999999975321 10 00 1111222222222222 234789999
Q ss_pred cCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
||||+.+|...+..+++.+|++|+|+|+++.........| ..... .++|+++++||+|+...
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~~-------~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQANK-------YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHHH-------cCCCEEEEEeCCCcccc
Confidence 9999999988889999999999999999986554443333 22211 16799999999998653
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.80 E-value=3e-20 Score=134.43 Aligned_cols=165 Identities=16% Similarity=0.256 Sum_probs=85.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC-CCCCCc--------cCcceeeeEEEEEEECCcEEEEEEecCCCh-------hh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR-KFSNQY--------KATIGADFLTKEVQFEDRLFTLQIWDTAGQ-------ER 69 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~ 69 (185)
...++|+|+|+.|+|||||++++++. .++... .++.............+....+++||++|. +.
T Consensus 16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45689999999999999999998875 332221 111111111112222344568899999997 33
Q ss_pred hccccc-------chhc-------------cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 70 FQSLGV-------AFYR-------------GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 70 ~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
+..... .+++ .+++++++.+.+.. +++... .. +..... .+.|+++|+||+|+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~-~l~~l~----~~~~iilV~~K~Dl 167 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VA-FMKAIH----NKVNIVPVIAKADT 167 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HH-HHHHHT----TTSCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HH-HHHHHH----hcCCEEEEEEeCCC
Confidence 333322 2322 23456666664321 222221 12 222222 15689999999999
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
..........+++.+++...+ ++++++||+++ |+++++.++.+.+....
T Consensus 168 ~~~~e~~~~~~~~~~~~~~~~-~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 168 LTLKERERLKKRILDEIEEHN-IKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp SCHHHHHHHHHHHHHHHHHTT-CCCCCCC----------CHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHHHHcC-CeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 764223334567777777776 89999999999 99999999999887544
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.80 E-value=5.3e-19 Score=140.54 Aligned_cols=117 Identities=21% Similarity=0.212 Sum_probs=81.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC--CCCC-----------Cc-----cCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR--KFSN-----------QY-----KATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~--~~~~-----------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
.+..+|+++|++|+|||||+++|+.. .+.. .+ .+..+.......+.+. .+.+++|||||+
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG~ 85 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPGH 85 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcCC
Confidence 45689999999999999999999852 2110 00 1111222222223333 468999999999
Q ss_pred hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 68 ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 68 ~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
.++......+++.+|++|+|+|+++..+......|. .+... ++|+++|+||+|+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~-~~~~~-------~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWR-QATTY-------GVPRIVFVNKMDKLGA 142 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHH-HHHHT-------TCCEEEEEECTTSTTC
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHH-HHHHc-------CCCEEEEEECCCcccc
Confidence 999888889999999999999999876665544443 33221 6799999999999764
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.79 E-value=9.1e-20 Score=135.24 Aligned_cols=155 Identities=11% Similarity=0.159 Sum_probs=96.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEE---------------------------------------
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTK--------------------------------------- 48 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~--------------------------------------- 48 (185)
..+|+|+|.+|||||||++++++..+.+......+......
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 45999999999999999999999876433222221110000
Q ss_pred -------------EEEE-CCcEEEEEEecCCChhhh-------------cccccchhccCcEEEEEEECCChhhHHHHHH
Q 029929 49 -------------EVQF-EDRLFTLQIWDTAGQERF-------------QSLGVAFYRGADCCVLVYDVNVMKSFDNLNN 101 (185)
Q Consensus 49 -------------~~~~-~~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~ 101 (185)
...+ ......+++|||||...+ ......+++.+|++|+|+|..+.+... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 0000 111235789999996654 455677889999999999876543222 22
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929 102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFEC 171 (185)
Q Consensus 102 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 171 (185)
++..+.. ... .+.|+++|+||+|+.... ....+.+.......+ .+++++++..+.++++.+..
T Consensus 192 ~~~l~~~-~~~---~~~~~i~V~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISRE-VDP---SGDRTFGVLTKIDLMDKG--TDAVEILEGRSFKLK-YPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHH-SCT---TCTTEEEEEECGGGCCTT--CCSHHHHTTSSSCCS-SCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHH-hcc---cCCCEEEEEeCCccCCCc--ccHHHHHcCcccccc-CCeEEEEECChHHhccCCCH
Confidence 2232222 222 267999999999998652 222333332222233 78899999988877765544
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.79 E-value=4.3e-19 Score=132.62 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=48.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEE---------------------ECC-cEEEEEEecCCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQ---------------------FED-RLFTLQIWDTAG 66 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~-~~~~~~~~D~~g 66 (185)
++|+++|.+|+|||||+|++++........|+++.+....... +.+ ....+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 5899999999999999999998774333344333333222211 122 246899999999
Q ss_pred hhh----hcccc---cchhccCcEEEEEEECCCh
Q 029929 67 QER----FQSLG---VAFYRGADCCVLVYDVNVM 93 (185)
Q Consensus 67 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 93 (185)
... ...+. ...++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 643 22222 2456899999999999875
No 188
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.79 E-value=1.5e-18 Score=123.96 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=78.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccc-------h-
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-------F- 77 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-------~- 77 (185)
..++|+++|.+|+|||||+++|++..+.. ...+..+....... +......+.+|||||...+...... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~--~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVS--RSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEE--EEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEE--EeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 46999999999999999999999877532 22222222222222 3334568999999997655432221 1
Q ss_pred -hccCcEEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 78 -YRGADCCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 78 -~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
...+|++++|+|++... +... ..|+..+...+... ...|+++|+||+|+...
T Consensus 116 ~~~~~d~il~v~~~d~~~-~~~~~~~~~~~l~~~~~~~--~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAYR-VDNLDKLVAKAITDSFGKG--IWNKAIVALTHAQFSPP 169 (270)
T ss_dssp TTCEECEEEEEEESSCCC-CCHHHHHHHHHHHHHHCGG--GGGGEEEEEECCSCCCG
T ss_pred hcCCCCEEEEEEeCCCCc-CCHHHHHHHHHHHHHhCcc--cccCEEEEEECcccCCc
Confidence 24699999999987532 3222 35566555443210 12589999999999754
No 189
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.78 E-value=5.4e-18 Score=131.38 Aligned_cols=117 Identities=15% Similarity=0.150 Sum_probs=80.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCC----------------------CCCccCcceeeeEEEEEEECCcEEEEEEec
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKF----------------------SNQYKATIGADFLTKEVQFEDRLFTLQIWD 63 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (185)
.+.-||+|+|+.++|||||..+|+.... ......+++.......+.+ .++.++++|
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~--~~~~iNlID 106 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY--RDRVVNLLD 106 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE--TTEEEEEEC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE--CCEEEEEEe
Confidence 3567999999999999999999852211 1112222222222333333 457899999
Q ss_pred CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|||+.+|.......++-+|++|+|+|+...-......-| ....+. ++|.++++||+|....
T Consensus 107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~~-------~lp~i~fINK~Dr~~a 167 (548)
T 3vqt_A 107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRMR-------ATPVMTFVNKMDREAL 167 (548)
T ss_dssp CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHHT-------TCCEEEEEECTTSCCC
T ss_pred CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHHh-------CCceEEEEecccchhc
Confidence 999999999999999999999999999985444433333 323221 7899999999998764
No 190
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.77 E-value=2.4e-19 Score=132.68 Aligned_cols=108 Identities=17% Similarity=0.156 Sum_probs=71.0
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
.+.+.+|||||... ........+|++++|+|....+....+. ......|.++|+||+|+......
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~------------~~~~~~p~ivVlNK~Dl~~~~~~ 235 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK------------KGVLELADIVVVNKADGEHHKEA 235 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC------------TTSGGGCSEEEEECCCGGGHHHH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH------------HhHhhcCCEEEEECCCCcChhHH
Confidence 36788999999432 2223458899999999987654332211 11114589999999998643112
Q ss_pred eecHHHHHHHHHhcC------CCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 136 VVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.....++........ ..+++++||++|.|+++++++|.+.+..
T Consensus 236 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 222223333222121 3689999999999999999999988764
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.76 E-value=1.2e-18 Score=130.62 Aligned_cols=162 Identities=16% Similarity=0.200 Sum_probs=78.7
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCc-------cCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc-----
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQY-------KATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----- 72 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----- 72 (185)
...++|+|+|+.|||||||++.|++.... ... .++.............+....+++||++|......
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 34589999999999999999999987653 211 11111111111112223345789999999654311
Q ss_pred --------------------cccchhccCc--EEEEEEECCChhhHHHH-HHHHHHHHhhcCCCCCCCCcEEEEEeCCCC
Q 029929 73 --------------------LGVAFYRGAD--CCVLVYDVNVMKSFDNL-NNWREEFLIQASPSDPENFPFVVLGNKTDV 129 (185)
Q Consensus 73 --------------------~~~~~~~~~d--~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl 129 (185)
....++..++ +++|+.+.+. .+++.. ..|+..+. .++|+|+|+||+|+
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~--------~~v~iIlVinK~Dl 179 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH--------EKVNIIPLIAKADT 179 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT--------TTSEEEEEEESTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh--------ccCcEEEEEEcccC
Confidence 1122344444 4555555431 122222 23444442 16799999999999
Q ss_pred CCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 130 DGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
..........+.+...+...+ ++++++|++++.++.+++..+...++
T Consensus 180 l~~~ev~~~k~~i~~~~~~~~-i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 180 LTPEECQQFKKQIMKEIQEHK-IKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp SCHHHHHHHHHHHHHHHHHHT-CCCCCCC-----------------CC
T ss_pred ccHHHHHHHHHHHHHHHHHcC-CeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 764222222356666766665 89999999999999998888877655
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.76 E-value=4.9e-20 Score=136.31 Aligned_cols=159 Identities=15% Similarity=0.183 Sum_probs=91.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE----------------------------------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL---------------------------------------- 46 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~---------------------------------------- 46 (185)
..++|+|+|.+|+|||||+++|++..+.+......+....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3579999999999999999999998764221111100000
Q ss_pred ---------EEEEEEC-CcEEEEEEecCCChh-------------hhcccccchhccCc-EEEEEEECCChhhHHHHHHH
Q 029929 47 ---------TKEVQFE-DRLFTLQIWDTAGQE-------------RFQSLGVAFYRGAD-CCVLVYDVNVMKSFDNLNNW 102 (185)
Q Consensus 47 ---------~~~~~~~-~~~~~~~~~D~~g~~-------------~~~~~~~~~~~~~d-~~i~v~d~~~~~~~~~~~~~ 102 (185)
...+.+. .....+++|||||.. .+..+...++..++ ++++|.|++..........+
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0001111 113578999999953 23445556665555 55556676542221111122
Q ss_pred HHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHH--HHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 103 REEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAW--CASKGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 103 ~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
...+ .. .+.|+++|+||+|+...... ....+... ....+..+++++||+++.|++++++++.+
T Consensus 190 ~~~~----~~---~~~~~i~V~NK~Dl~~~~~~--~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 190 AKEV----DP---QGQRTIGVITKLDLMDEGTD--ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHH----CT---TCTTEEEEEECGGGSCTTCC--CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHh----Cc---CCCceEEEeccccccCcchh--HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 2222 22 26799999999999864321 11111100 00012236788999999999999998876
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.76 E-value=9.9e-19 Score=121.27 Aligned_cols=158 Identities=17% Similarity=0.119 Sum_probs=93.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceee--------------eEEEEEEE----------------CCcE
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGAD--------------FLTKEVQF----------------EDRL 56 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~----------------~~~~ 56 (185)
...+|+++|.+|+|||||+++|...............+ .....+.. ....
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 45799999999999999999998653211000000000 00111111 1123
Q ss_pred EEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCcee
Q 029929 57 FTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRV 136 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~ 136 (185)
+.+.+|||+|+...... +....+.+++|+|+.+.... ...+.... +.|.++|+||+|+... ..
T Consensus 109 ~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~--~~~~~~~~----------~~~~iiv~NK~Dl~~~--~~ 171 (221)
T 2wsm_A 109 CDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV--VEKHPEIF----------RVADLIVINKVALAEA--VG 171 (221)
T ss_dssp CSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH--HHHCHHHH----------HTCSEEEEECGGGHHH--HT
T ss_pred CCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh--hhhhhhhh----------hcCCEEEEecccCCcc--hh
Confidence 46788899884111111 11246889999998764321 11111111 4589999999998642 11
Q ss_pred ecHHHHHHHHHhc-CCCcEEEeeeccCCCHHHHHHHHHHHHhhcCC
Q 029929 137 VSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALKNEP 181 (185)
Q Consensus 137 ~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~~ 181 (185)
...+.....+... ..++++++||++|.|+++++++|.+.+.....
T Consensus 172 ~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 217 (221)
T 2wsm_A 172 ADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHSD 217 (221)
T ss_dssp CCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHHh
Confidence 2344444444443 24789999999999999999999998876543
No 194
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.75 E-value=5.3e-17 Score=119.35 Aligned_cols=85 Identities=25% Similarity=0.167 Sum_probs=57.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhhhc-
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ- 71 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~- 71 (185)
.++|+++|.+|+|||||+|++++........|+++.+.....+.+.+. ...+.+||+||.....
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 378999999999999999999987754443444443333333444442 1478999999976542
Q ss_pred ---ccc---cchhccCcEEEEEEECCC
Q 029929 72 ---SLG---VAFYRGADCCVLVYDVNV 92 (185)
Q Consensus 72 ---~~~---~~~~~~~d~~i~v~d~~~ 92 (185)
.+. ...++.+|++++|+|+++
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 222 234689999999999986
No 195
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.72 E-value=7.9e-19 Score=129.42 Aligned_cols=107 Identities=12% Similarity=0.014 Sum_probs=62.4
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
++.+.++||+|.... .......+|++++|+|++.++....+. ..+ ...|.++|+||+|+......
T Consensus 166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i---------l~~~~ivVlNK~Dl~~~~~~ 230 (349)
T 2www_A 166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI---------IEMADLVAVTKSDGDLIVPA 230 (349)
T ss_dssp TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------------------CCSCSEEEECCCSGGGHHHH
T ss_pred CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH---------HhcCCEEEEeeecCCCchhH
Confidence 356789999995321 123457899999999998653222111 111 14478999999998642110
Q ss_pred eecHHHHHHHHHh------cCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 136 VVSEKKAKAWCAS------KGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 136 ~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
......+...... .+..+++++||++|.|+++++++|.+.+.
T Consensus 231 ~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 231 RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 0111111111111 11357899999999999999999988764
No 196
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.71 E-value=4.6e-18 Score=123.06 Aligned_cols=134 Identities=19% Similarity=0.132 Sum_probs=102.7
Q ss_pred HHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcccccchhccCcEEEEEEECCChh-hHHHHH
Q 029929 23 SLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLN 100 (185)
Q Consensus 23 tli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~ 100 (185)
+|+.+++...+. ..+.||.+..+. .. +.... .+.+||+ ++.+..++..+++.+|++|+|+|+++++ +++.+.
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~ 105 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID 105 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence 577777777777 778888885443 22 22222 6889999 8889999999999999999999999987 788888
Q ss_pred HHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC-CcEEEeeeccCCCHHHHHHHHH
Q 029929 101 NWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN-IPYFETSAKEGFNVEAAFECIA 173 (185)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~i~ 173 (185)
.|+..+.. .++|+++|+||+|+.+. +. .++...++..... ++++++||++|.|+++++.++.
T Consensus 106 ~~l~~~~~-------~~~piilv~NK~DL~~~--~~--v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 106 KFLVLAEK-------NELETVMVINKMDLYDE--DD--LRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp HHHHHHHH-------TTCEEEEEECCGGGCCH--HH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred HHHHHHHH-------CCCCEEEEEeHHHcCCc--hh--HHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 88886643 16799999999999753 22 1344555544432 6899999999999999998765
No 197
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.70 E-value=4.5e-17 Score=131.90 Aligned_cols=117 Identities=21% Similarity=0.198 Sum_probs=84.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCC----------------CccC--cceeeeEEEEEE------------ECCc
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSN----------------QYKA--TIGADFLTKEVQ------------FEDR 55 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~------------~~~~ 55 (185)
....+|+|+|+.|+|||||+++|+...... ...+ |.........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998642100 0111 222222222232 2344
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
.+.+++|||||+.+|...+..+++.+|++|+|+|+.+..++.....|..... .++|+++++||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~--------~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG--------ERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH--------TTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH--------cCCCeEEEEECCCcc
Confidence 7899999999999999999999999999999999999877776544443221 167999999999986
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.70 E-value=5.5e-18 Score=124.69 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=66.4
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
++.+.++||||....... ....+|++++|+|++..+....+.. .. .+.|.++|+||+|+.+....
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~---------~~~p~ivv~NK~Dl~~~~~~ 212 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL---------MEVADLIVINKDDGDNHTNV 212 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH---------HHHCSEEEECCCCTTCHHHH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh---------hcccCEEEEECCCCCChHHH
Confidence 457899999995543322 3578999999999975433211110 00 03488999999999753111
Q ss_pred eecHHHHHHHHHhcC------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 136 VVSEKKAKAWCASKG------NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 136 ~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
....+++.......+ ..+++++||++|.|+++++++|.+.+.
T Consensus 213 ~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111122333222222 357899999999999999999998765
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.69 E-value=7.8e-16 Score=122.92 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=79.8
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCC--------C----------CCCccCcceeeeEEEEEEEC-----CcEEEEEEe
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRK--------F----------SNQYKATIGADFLTKEVQFE-----DRLFTLQIW 62 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~--------~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 62 (185)
.+..||+|+|+.++|||||..+|+... . .......++..-....+.+. ...+.++++
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456799999999999999999985211 0 01112222222222333332 236899999
Q ss_pred cCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 63 DTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 63 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
|||||.+|.......++-+|++|+|+|+...-......-| ++..+. ++|.++++||+|....
T Consensus 91 DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~-~~a~~~-------~lp~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVW-RQANKY-------GVPRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH-HHHHHH-------TCCEEEEEECSSSTTC
T ss_pred eCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHH-HHHHHc-------CCCeEEEEccccccCc
Confidence 9999999999999999999999999999874443332223 322222 7799999999998643
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.69 E-value=4.3e-18 Score=134.30 Aligned_cols=163 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCC--------CC-----cc---CcceeeeEEEEEEECCcEEEEEEecCCChhhhc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFS--------NQ-----YK---ATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~--------~~-----~~---~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~ 71 (185)
..||+|+|+.++|||||..+|+..... .. +. .-.+.+.......+...++.++++|||||.+|.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH
Confidence 468999999999999999998632110 00 00 001223333333444456788999999999999
Q ss_pred ccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH---------
Q 029929 72 SLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA--------- 142 (185)
Q Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~--------- 142 (185)
......++-+|++|+|+|+...-.... ...+....+. ++|.++++||+|....+.... .+++
T Consensus 82 ~Ev~raL~~~DgavlVVDa~~GV~~qT-~~v~~~a~~~-------~lp~i~~INKmDr~~a~~~~~-~~~i~~~l~~~~~ 152 (638)
T 3j25_A 82 AEVYRSLSVLDGAILLISAKDGVQAQT-RILFHALRKM-------GIPTIFFINKIDQNGIDLSTV-YQDIKEKLSAEIV 152 (638)
T ss_dssp HHHHHHHTTCSEEECCEESSCTTCSHH-HHHHHHHHHH-------TCSCEECCEECCSSSCCSHHH-HHHHHHTTCCCCC
T ss_pred HHHHHHHHHhCEEEEEEeCCCCCcHHH-HHHHHHHHHc-------CCCeEEEEeccccccCCHHHH-HHHHHHHhCCCcc
Confidence 999999999999999999987433332 2222333322 679999999999865431110 0000
Q ss_pred ---------------------------------------------------HHHHHhcCCCcEEEeeeccCCCHHHHHHH
Q 029929 143 ---------------------------------------------------KAWCASKGNIPYFETSAKEGFNVEAAFEC 171 (185)
Q Consensus 143 ---------------------------------------------------~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 171 (185)
..........|++..||+++.|++.+++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~ 232 (638)
T 3j25_A 153 IKQKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEV 232 (638)
T ss_dssp CCCCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHH
T ss_pred ccceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhh
Confidence 00011122368889999999999999999
Q ss_pred HHHHHhhc
Q 029929 172 IAKNALKN 179 (185)
Q Consensus 172 i~~~~~~~ 179 (185)
+...++..
T Consensus 233 i~~~~p~p 240 (638)
T 3j25_A 233 ITNKFYSS 240 (638)
T ss_dssp HHHSCCCS
T ss_pred hhccccCc
Confidence 99877654
No 201
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.68 E-value=9.7e-17 Score=111.58 Aligned_cols=155 Identities=17% Similarity=0.138 Sum_probs=89.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeE------------EEEEEEC-Cc------------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFL------------TKEVQFE-DR------------------ 55 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~------------------ 55 (185)
..++|+++|.+|+|||||+++++...+.....++...++. .....++ +.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999876544333333332221 1111111 10
Q ss_pred -EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc
Q 029929 56 -LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS 134 (185)
Q Consensus 56 -~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~ 134 (185)
...+.++|++|.-.... .+-...+..+.++|......... .....+ ..|.++|+||+|+...
T Consensus 117 ~~~d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~----------~~~~iiv~NK~Dl~~~-- 179 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIE--KHPGIM----------KTADLIVINKIDLADA-- 179 (226)
T ss_dssp GGCSEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTT--TCHHHH----------TTCSEEEEECGGGHHH--
T ss_pred CCCCEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHh--hhhhHh----------hcCCEEEEeccccCch--
Confidence 11344556655211000 01122445566777532111100 001111 4588999999998642
Q ss_pred eeecHHHHHHHHHhc-CCCcEEEeeeccCCCHHHHHHHHHHHHhh
Q 029929 135 RVVSEKKAKAWCASK-GNIPYFETSAKEGFNVEAAFECIAKNALK 178 (185)
Q Consensus 135 ~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~i~~~~~~ 178 (185)
.....+.....+... ..++++++||++|.|+++++++|.+.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 180 VGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 223455555555543 34789999999999999999999988764
No 202
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.68 E-value=1.9e-16 Score=116.96 Aligned_cols=84 Identities=23% Similarity=0.131 Sum_probs=56.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECC-------------------cEEEEEEecCCChhh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFED-------------------RLFTLQIWDTAGQER 69 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~D~~g~~~ 69 (185)
++|+++|.+|+|||||++++++........+..+.........+.+ ....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998653322233333322222233322 234789999999765
Q ss_pred hc-------ccccchhccCcEEEEEEECCC
Q 029929 70 FQ-------SLGVAFYRGADCCVLVYDVNV 92 (185)
Q Consensus 70 ~~-------~~~~~~~~~~d~~i~v~d~~~ 92 (185)
.. ......++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 122335689999999999985
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.68 E-value=3.8e-17 Score=129.73 Aligned_cols=159 Identities=15% Similarity=0.167 Sum_probs=96.3
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCC-CccCccee------------------------------------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSN-QYKATIGA------------------------------------------ 43 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~-~~~~~~~~------------------------------------------ 43 (185)
..++|+|+|.+++|||||+|+|++..+.+ ....++..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 45799999999999999999999987632 21111100
Q ss_pred --------eeEEEEEEECCcEEEEEEecCCChhh-------------hcccccchh-ccCcEEEEEEECCChhhHHHHHH
Q 029929 44 --------DFLTKEVQFEDRLFTLQIWDTAGQER-------------FQSLGVAFY-RGADCCVLVYDVNVMKSFDNLNN 101 (185)
Q Consensus 44 --------~~~~~~~~~~~~~~~~~~~D~~g~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~~~~~~~~ 101 (185)
+.....+...+ ...++++||||... .......++ ..+|++++|+|++..........
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ 208 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 208 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence 00111111111 22578999999332 222333444 57899999999987433222222
Q ss_pred HHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHH-HH-HhcCCCcEEEeeeccCCCHHHHHHHHHHH
Q 029929 102 WREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKA-WC-ASKGNIPYFETSAKEGFNVEAAFECIAKN 175 (185)
Q Consensus 102 ~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~s~~~~~~i~~~~~~i~~~ 175 (185)
+...+ .. .+.|+++|+||+|+....... ...... .. ...+..+++++||++|.|++++++.+.+.
T Consensus 209 ll~~L----~~---~g~pvIlVlNKiDlv~~~~~~--~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 209 IAKEV----DP---QGQRTIGVITKLDLMDEGTDA--RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHH----CT---TCSSEEEEEECTTSSCTTCCS--HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHH----Hh---cCCCEEEEEeCcccCCcchhh--HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 33333 22 267999999999998653221 111110 00 01123467889999999999999999873
No 204
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.67 E-value=5.9e-17 Score=125.75 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=78.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC---CCccCcceeeeEEEE---------------------------------
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS---NQYKATIGADFLTKE--------------------------------- 49 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~---~~~~~~~~~~~~~~~--------------------------------- 49 (185)
...++|+|+|.+|+|||||+|+|++..+. ....++++.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 35689999999999999999999998763 333333321111000
Q ss_pred ---EEECCc-EEEEEEecCCChhh-----------hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC
Q 029929 50 ---VQFEDR-LFTLQIWDTAGQER-----------FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD 114 (185)
Q Consensus 50 ---~~~~~~-~~~~~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (185)
...... ...+++|||||... +......++..+|++|+|+|+++....+....++..+. ..
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~----~~- 217 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALR----GH- 217 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTT----TC-
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHH----hc-
Confidence 000000 02578999999654 33455567789999999999987544444444544432 21
Q ss_pred CCCCcEEEEEeCCCCCCC
Q 029929 115 PENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 115 ~~~~p~iiv~nK~Dl~~~ 132 (185)
+.|+++|+||+|+...
T Consensus 218 --~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 218 --EDKIRVVLNKADMVET 233 (550)
T ss_dssp --GGGEEEEEECGGGSCH
T ss_pred --CCCEEEEEECCCccCH
Confidence 5689999999999863
No 205
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.65 E-value=6.5e-16 Score=109.70 Aligned_cols=119 Identities=14% Similarity=-0.046 Sum_probs=69.2
Q ss_pred EEEEEecCCChhhhccccc------chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 57 FTLQIWDTAGQERFQSLGV------AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+.+.+|||||......... ..+.. +++++++|+..................... ..+.|+++|+||+|+.
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D~~ 184 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVDLL 184 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGGGC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccccc
Confidence 5789999999765433211 23456 889999988643222222111111100000 0156999999999987
Q ss_pred CCCceeecHHH------HH-H-----------------HHHhcC-CCcEEEeeeccCCCHHHHHHHHHHHHhhc
Q 029929 131 GGNSRVVSEKK------AK-A-----------------WCASKG-NIPYFETSAKEGFNVEAAFECIAKNALKN 179 (185)
Q Consensus 131 ~~~~~~~~~~~------~~-~-----------------~~~~~~-~~~~~~~s~~~~~~i~~~~~~i~~~~~~~ 179 (185)
.........+. .. . ++...+ ..+++++||+++.|+++++++|.+.+...
T Consensus 185 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~ 258 (262)
T 1yrb_A 185 SEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTC 258 (262)
T ss_dssp CHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhccc
Confidence 53110000110 00 0 012222 25899999999999999999999887654
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.6e-15 Score=108.82 Aligned_cols=119 Identities=15% Similarity=0.108 Sum_probs=84.3
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------ccccchh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGVAFY 78 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~ 78 (185)
....+|+++|.||+|||||+|+|++........|+++.+.....+.+.+ .+++++||||..... ......+
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 3446899999999999999999999887767778888888888888776 467889999942211 1223345
Q ss_pred ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 79 RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 79 ~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+.+|++++|+|+++|.... .....++..... ...+.|.++++||.|..
T Consensus 148 ~~ad~il~vvD~~~p~~~~--~~i~~EL~~~~~--~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 148 RTCNLLFIILDVNKPLHHK--QIIEKELEGVGI--RLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHCSEEEEEEETTSHHHHH--HHHHHHHHHTTE--EETCCCCCEEEEECSSS
T ss_pred HhcCccccccccCccHHHH--HHHHHHHHHhhH--hhccCChhhhhhHhhhh
Confidence 7899999999999864322 222233322211 11255889999999974
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.56 E-value=4.4e-14 Score=103.67 Aligned_cols=105 Identities=14% Similarity=0.161 Sum_probs=63.2
Q ss_pred EEEEEEecCCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCce
Q 029929 56 LFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSR 135 (185)
Q Consensus 56 ~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~ 135 (185)
++.+.++||+|..... ......+|++++++|+...+....+... +. ..+.++++||+|+... .
T Consensus 147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~---------~~~~ivvlNK~Dl~~~--~ 209 (337)
T 2qm8_A 147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKG---IF---------ELADMIAVNKADDGDG--E 209 (337)
T ss_dssp TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTT---HH---------HHCSEEEEECCSTTCC--H
T ss_pred CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh---------ccccEEEEEchhccCc--h
Confidence 4578899999954321 1234689999999998754322111110 11 2356788899997642 1
Q ss_pred eecHHHHHHHHHh---cC------CCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 136 VVSEKKAKAWCAS---KG------NIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 136 ~~~~~~~~~~~~~---~~------~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
.........+... .. ..+++.+||+++.|++++++.|.+...
T Consensus 210 ~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 210 RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 1111122222221 11 357899999999999999999988764
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.55 E-value=2.3e-15 Score=101.43 Aligned_cols=112 Identities=10% Similarity=-0.025 Sum_probs=73.6
Q ss_pred CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeCC-CCCCCCceeecHHH
Q 029929 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNKT-DVDGGNSRVVSEKK 141 (185)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~-Dl~~~~~~~~~~~~ 141 (185)
.+||...+.+|..|+..+|++|||+|.++.+..+ ...-+..+..++.... ..+.|++|++||. |+... ....+
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A----ms~~E 183 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----MPCFY 183 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB----CCHHH
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC----CCHHH
Confidence 3479999999999999999999999999976544 3333333344443332 3578999999995 77543 33334
Q ss_pred HHHHHHh---cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 142 AKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 142 ~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+.+...- ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 184 I~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 184 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 3332211 23588999999999999999999998886655
No 209
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.48 E-value=4.5e-14 Score=104.84 Aligned_cols=87 Identities=21% Similarity=0.119 Sum_probs=52.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhhhc
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQERFQ 71 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~ 71 (185)
..++|+++|.+|+|||||++++++........|+++.++....+.+.+. ...+.+||+||.....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4579999999999999999999988765555666666665555555442 2358999999966543
Q ss_pred c-------cccchhccCcEEEEEEECCCh
Q 029929 72 S-------LGVAFYRGADCCVLVYDVNVM 93 (185)
Q Consensus 72 ~-------~~~~~~~~~d~~i~v~d~~~~ 93 (185)
. .+..+++.+|++++|+|+.+.
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC---
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 3 345667899999999999754
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.47 E-value=1.8e-12 Score=96.48 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=63.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCC-CCCccCcceeeeEEEEEEECCc---------------EEEEEEecCCChhh-
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKF-SNQYKATIGADFLTKEVQFEDR---------------LFTLQIWDTAGQER- 69 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~- 69 (185)
...+++++|++|+|||||+|+|++... .....|+++.++....+.+.+. ...+.+||+||...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 347899999999999999999999876 5556676666666666666542 13678999999432
Q ss_pred ------hcccccchhccCcEEEEEEECCC
Q 029929 70 ------FQSLGVAFYRGADCCVLVYDVNV 92 (185)
Q Consensus 70 ------~~~~~~~~~~~~d~~i~v~d~~~ 92 (185)
+.......++.+|++++|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22234445688999999999863
No 211
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=3.2e-13 Score=97.72 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=75.9
Q ss_pred hhhhcccccchhccCcEEEEEEECCChh-hHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec-HHHHHH
Q 029929 67 QERFQSLGVAFYRGADCCVLVYDVNVMK-SFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS-EKKAKA 144 (185)
Q Consensus 67 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~-~~~~~~ 144 (185)
++.+..+...+++++|++++|+|+++++ ++..+..|+..+.. .++|+++|+||+|+.+. .+.. .+....
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~-------~~~~~ilV~NK~DL~~~--~~v~~~~~~~~ 136 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY-------FKVEPVIVFNKIDLLNE--EEKKELERWIS 136 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH-------TTCEEEEEECCGGGCCH--HHHHHHHHHHH
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh-------CCCCEEEEEEcccCCCc--cccHHHHHHHH
Confidence 6667777778899999999999999986 88878888876543 26799999999999753 1111 344555
Q ss_pred HHHhcCCCcEEEeeeccCCCHHHHHHHHH
Q 029929 145 WCASKGNIPYFETSAKEGFNVEAAFECIA 173 (185)
Q Consensus 145 ~~~~~~~~~~~~~s~~~~~~i~~~~~~i~ 173 (185)
++...+ ++++++||++|.|+++++..+.
T Consensus 137 ~~~~~g-~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 137 IYRDAG-YDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHHTT-CEEEECCTTTCTTHHHHHHHTT
T ss_pred HHHHCC-CeEEEEECCCCCCHHHHHhhcc
Confidence 555555 7999999999999999998764
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.41 E-value=3e-14 Score=100.59 Aligned_cols=112 Identities=10% Similarity=-0.030 Sum_probs=75.1
Q ss_pred CCChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCC-CCCCcEEEEEeC-CCCCCCCceeecHHH
Q 029929 64 TAGQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSD-PENFPFVVLGNK-TDVDGGNSRVVSEKK 141 (185)
Q Consensus 64 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK-~Dl~~~~~~~~~~~~ 141 (185)
.+||...+..|..|+..+|++|||+|+++.+.++ ...-+.++..+..... ..+.|++|++|| .|+... ....+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A----ms~~E 268 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR----MPCFY 268 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB----CCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC----CCHHH
Confidence 4678999999999999999999999999977544 2222222222222111 137899999996 588643 33333
Q ss_pred HHHHHHh---cCCCcEEEeeeccCCCHHHHHHHHHHHHhhcC
Q 029929 142 AKAWCAS---KGNIPYFETSAKEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 142 ~~~~~~~---~~~~~~~~~s~~~~~~i~~~~~~i~~~~~~~~ 180 (185)
+.+...- ...+.+..|||.+|+|+.+.++||.+.+..++
T Consensus 269 I~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 269 LAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 3332211 13578999999999999999999999886654
No 213
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=1.5e-11 Score=87.49 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=71.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCCc--------cCcceeeeEEEEEEECC--cEEEEEEecCCChhhhc------
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQY--------KATIGADFLTKEVQFED--RLFTLQIWDTAGQERFQ------ 71 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~------ 71 (185)
.|+++++|+.|||||||++.+++...+..- .+... ......+.... ....++++|++|-....
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~-~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTV-EIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCC-SCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcce-eeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999875432110 00000 00111111122 22367899999821100
Q ss_pred ------------ccc----------cchhccCcEEEEEEECC-ChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCC
Q 029929 72 ------------SLG----------VAFYRGADCCVLVYDVN-VMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTD 128 (185)
Q Consensus 72 ------------~~~----------~~~~~~~d~~i~v~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D 128 (185)
... ...+..++++++++|.. .+-.... ...+..+.. .+++++|++|+|
T Consensus 81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~--------~~~vI~Vi~K~D 151 (270)
T 3sop_A 81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK--------VVNIIPVIAKAD 151 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--------TSEEEEEETTGG
T ss_pred HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--------cCcEEEEEeccc
Confidence 000 01123468899999965 3222222 222333321 258999999999
Q ss_pred CCCCCceeecHHHHHHHHHhcCCCcEEE
Q 029929 129 VDGGNSRVVSEKKAKAWCASKGNIPYFE 156 (185)
Q Consensus 129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (185)
.....+.......+.......+ +++++
T Consensus 152 ~lt~~e~~~~k~~i~~~l~~~~-i~i~~ 178 (270)
T 3sop_A 152 TMTLEEKSEFKQRVRKELEVNG-IEFYP 178 (270)
T ss_dssp GSCHHHHHHHHHHHHHHHHHTT-CCCSS
T ss_pred cCCHHHHHHHHHHHHHHHHHcC-ccccC
Confidence 8865433333444444444444 44443
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.23 E-value=2.3e-11 Score=91.18 Aligned_cols=144 Identities=14% Similarity=0.156 Sum_probs=71.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCCCCCCc----cCcceeeeEEEEEEECCcEEEEEEecCCChhhh------------
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRKFSNQY----KATIGADFLTKEVQFEDRLFTLQIWDTAGQERF------------ 70 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~------------ 70 (185)
..++++|+|+.|||||||++.+++..+.... .+..............+....++++|++|-...
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~ 120 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE 120 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence 3467999999999999999999987543111 111111111111121222347889999883211
Q ss_pred --cccc----cc---------hhcc--CcE-EEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCC
Q 029929 71 --QSLG----VA---------FYRG--ADC-CVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGG 132 (185)
Q Consensus 71 --~~~~----~~---------~~~~--~d~-~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 132 (185)
...+ .. .... +|+ ++++.|....-+... ..+.+.+. .+.|+|+|+||+|....
T Consensus 121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D-----ieilk~L~----~~~~vI~Vi~KtD~Lt~ 191 (427)
T 2qag_B 121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD-----LVTMKKLD----SKVNIIPIIAKADAISK 191 (427)
T ss_dssp HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH-----HHHHHHTC----SCSEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH-----HHHHHHHh----hCCCEEEEEcchhccch
Confidence 0000 11 1112 344 445666654332222 12222222 26799999999998764
Q ss_pred CceeecHHHHHHHHHhcCCCcEEEeeec
Q 029929 133 NSRVVSEKKAKAWCASKGNIPYFETSAK 160 (185)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 160 (185)
.+.......+....... +++++.+|..
T Consensus 192 ~E~~~l~~~I~~~L~~~-gi~I~~is~~ 218 (427)
T 2qag_B 192 SELTKFKIKITSELVSN-GVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHHHBTT-BCCCCCCC--
T ss_pred HHHHHHHHHHHHHHHHc-CCcEEecCCC
Confidence 33333333333322223 3677777753
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.22 E-value=2e-12 Score=95.95 Aligned_cols=140 Identities=17% Similarity=0.177 Sum_probs=79.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC------CCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhc-------cccc
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR------KFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ-------SLGV 75 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~ 75 (185)
.+|+++|.+|+|||||+|+|++. .......++++.. ...+.+... +.++||||-.... ....
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~--~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLD--MIEIPLESG---ATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCE--EEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEe--eEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999976 2222333333333 333433432 6789999933211 1111
Q ss_pred chh---ccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCC
Q 029929 76 AFY---RGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNI 152 (185)
Q Consensus 76 ~~~---~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 152 (185)
..+ +..|.++++++.........+.. . ......+.|+++++||+|..+. .........+....+ .
T Consensus 238 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----l---~~l~~~~~~~~~v~~k~d~~~~---~~~~~~~~~~~~~~g-~ 305 (369)
T 3ec1_A 238 KIITPKREIHPRVYQLNEGQTLFFGGLAR-----L---DYIKGGRRSFVCYMANELTVHR---TKLEKADSLYANQLG-E 305 (369)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTTEE-----E---EEEESSSEEEEEEECTTSCEEE---EEGGGHHHHHHHHBT-T
T ss_pred HHHhcccccCceEEEEcCCceEEECCEEE-----E---EEccCCCceEEEEecCCccccc---ccHHHHHHHHHHhcC-C
Confidence 122 56899999999853211111100 1 1111226799999999998864 233333334444454 4
Q ss_pred cEEEeeeccCCCH
Q 029929 153 PYFETSAKEGFNV 165 (185)
Q Consensus 153 ~~~~~s~~~~~~i 165 (185)
.+.+.++....++
T Consensus 306 ~l~p~~~~~~~~~ 318 (369)
T 3ec1_A 306 LLSPPSKRYAAEF 318 (369)
T ss_dssp TBCSSCGGGTTTC
T ss_pred ccCCCCchhhhhc
Confidence 5555555554443
No 216
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.17 E-value=1.2e-10 Score=89.25 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=82.8
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH------hCCCC----CCccCcc-----------eeeeEEEEEE-------------E
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYV------NRKFS----NQYKATI-----------GADFLTKEVQ-------------F 52 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~------~~~~~----~~~~~~~-----------~~~~~~~~~~-------------~ 52 (185)
.+..|+++|.+||||||++++|. +.+.. +...+.. +..+...... .
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999997 33211 0001100 0111110000 0
Q ss_pred CCcEEEEEEecCCChhhhc----ccccch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcE-EEEEe
Q 029929 53 EDRLFTLQIWDTAGQERFQ----SLGVAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPF-VVLGN 125 (185)
Q Consensus 53 ~~~~~~~~~~D~~g~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-iiv~n 125 (185)
....+.+.++||||..... ...... ...+|.+++|+|+....... .....+.. ..|+ .+|+|
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~--------~~~i~gvVlN 248 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD--------KVDVASVIVT 248 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH--------HHCCCCEEEE
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh--------hcCceEEEEe
Confidence 0034578899999954221 111111 22789999999998743221 12222222 1364 89999
Q ss_pred CCCCCCCCceeecHHHHHHHHHhcC-----------------CCcEEEeeeccCCC-HHHHHHHHHHH
Q 029929 126 KTDVDGGNSRVVSEKKAKAWCASKG-----------------NIPYFETSAKEGFN-VEAAFECIAKN 175 (185)
Q Consensus 126 K~Dl~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~s~~~~~~-i~~~~~~i~~~ 175 (185)
|.|....... ........+ ..+.+.+|+..|.| +.++++++.+.
T Consensus 249 K~D~~~~~g~------~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 249 KLDGHAKGGG------ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CTTSCCCCTH------HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred CCccccchHH------HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 9998743211 111111222 12234578889999 99999998766
No 217
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.16 E-value=3e-10 Score=85.08 Aligned_cols=162 Identities=14% Similarity=0.177 Sum_probs=87.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCCCCCC-ccCcceeee--EEEEEEECCcEEEEEEecCCChhhhcccccc-----hhc
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRKFSNQ-YKATIGADF--LTKEVQFEDRLFTLQIWDTAGQERFQSLGVA-----FYR 79 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~~~ 79 (185)
...++++|++|||||||+|.+.+...+.. .....+... ....... .....++++|++|.......... .+.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~-~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~ 147 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY 147 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccc-cccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence 35799999999999999999998542211 000001000 0111111 11125788999984322111111 123
Q ss_pred cCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC---------CCCceeecHHHHHHHHH---
Q 029929 80 GADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD---------GGNSRVVSEKKAKAWCA--- 147 (185)
Q Consensus 80 ~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~---------~~~~~~~~~~~~~~~~~--- 147 (185)
..+..++ ++......-. ..+...+... +.|+++|.||.|+. +...+....+.++.+..
T Consensus 148 ~~~~~~~-lS~G~~~kqr--v~la~aL~~~-------~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 148 EYDFFII-ISATRFKKND--IDIAKAISMM-------KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp GCSEEEE-EESSCCCHHH--HHHHHHHHHT-------TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred ccCCeEE-eCCCCccHHH--HHHHHHHHhc-------CCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3455554 7776311111 1122222221 56999999999974 11112222333444431
Q ss_pred -hc--CCCcEEEeee--ccCCCHHHHHHHHHHHHhhcC
Q 029929 148 -SK--GNIPYFETSA--KEGFNVEAAFECIAKNALKNE 180 (185)
Q Consensus 148 -~~--~~~~~~~~s~--~~~~~i~~~~~~i~~~~~~~~ 180 (185)
.. ....++.+|+ ..+.|++++.+.+.+.+++..
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 21 2247899999 566679999999998877654
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.13 E-value=5.9e-12 Score=93.40 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=73.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-------CCccCcceeeeEEEEEEECCcEEEEEEecCCChhhhcc----cc---
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-------NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQS----LG--- 74 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~~--- 74 (185)
.+|+++|.+|+|||||+|+|++.... ....++++ .....+.+... +.++||||-..... ..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT--~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT--LDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC------CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCee--cceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHH
Confidence 58999999999999999999976311 12222222 22333443332 67899999432211 11
Q ss_pred -cch--hccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929 75 -VAF--YRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (185)
Q Consensus 75 -~~~--~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (185)
..+ ....+.++++++.........+.. . ......+.|+++++||+|..+. .........+....+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-----~---d~l~~~~~~~~~v~nk~d~~~~---~~~~~~~~~~~~~~g- 303 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR-----F---DYVSGGRRAFTCHFSNRLTIHR---TKLEKADELYKNHAG- 303 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE-----E---EEEESSSEEEEEEECTTSCEEE---EEHHHHHHHHHHHBT-
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE-----E---EEecCCCceEEEEecCcccccc---ccHHHHHHHHHHHhC-
Confidence 111 256788999998843211111100 1 1111226799999999998863 233333333444444
Q ss_pred CcEEEeeec
Q 029929 152 IPYFETSAK 160 (185)
Q Consensus 152 ~~~~~~s~~ 160 (185)
..+++.++.
T Consensus 304 ~~l~p~~~~ 312 (368)
T 3h2y_A 304 DLLSPPTPE 312 (368)
T ss_dssp TTBCSSCHH
T ss_pred CccCCCchh
Confidence 344444443
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=4.1e-10 Score=83.55 Aligned_cols=101 Identities=15% Similarity=0.134 Sum_probs=71.1
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-eeecHHHHHH
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKA 144 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~ 144 (185)
..+.|......+.+.+|++++|+|+.+++ ..|...+.+... +.|+++|+||+|+.+... .+...+.+..
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~-----~~p~ilV~NK~DL~~~~~~~~~~~~~l~~ 124 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVG-----NNKVLLVGNKADLIPKSVKHDKVKHWMRY 124 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSS-----SSCEEEEEECGGGSCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhC-----CCcEEEEEEChhcCCcccCHHHHHHHHHH
Confidence 35778888888889999999999999853 344444544432 679999999999976421 1111222233
Q ss_pred HHHhcCC--CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 145 ~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
.+...+. .+++.+||++|.|++++++.|.+..
T Consensus 125 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 125 SAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 3444442 2799999999999999999997754
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.99 E-value=6.2e-10 Score=82.63 Aligned_cols=101 Identities=16% Similarity=0.166 Sum_probs=70.3
Q ss_pred ChhhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCc-eeecHHHHHH
Q 029929 66 GQERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNS-RVVSEKKAKA 144 (185)
Q Consensus 66 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~-~~~~~~~~~~ 144 (185)
.++.|......+...++++++|+|+.++++ .|...+.+.+. +.|+++|+||+|+.+... .+...+....
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~-----~~piilV~NK~DLl~~~~~~~~~~~~l~~ 126 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAA-----DNPILLVGNKADLLPRSVKYPKLLRWMRR 126 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCT-----TSCEEEEEECGGGSCTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhC-----CCCEEEEEEChhcCCCccCHHHHHHHHHH
Confidence 477888888888899999999999998763 23333333332 569999999999976421 1111222333
Q ss_pred HHHhcCC--CcEEEeeeccCCCHHHHHHHHHHHH
Q 029929 145 WCASKGN--IPYFETSAKEGFNVEAAFECIAKNA 176 (185)
Q Consensus 145 ~~~~~~~--~~~~~~s~~~~~~i~~~~~~i~~~~ 176 (185)
.+...+. .+++.+||++|.|++++++.|.+..
T Consensus 127 ~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 127 MAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3444442 3789999999999999999998765
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.96 E-value=9.3e-10 Score=78.75 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=68.5
Q ss_pred ecCCChh-hhcccccchhccCcEEEEEEECCChhhHHH--HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeec
Q 029929 62 WDTAGQE-RFQSLGVAFYRGADCCVLVYDVNVMKSFDN--LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVS 138 (185)
Q Consensus 62 ~D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~ 138 (185)
-..|||. .........+..+|+++.|+|+.+|.+... +..+ . .++|.++|+||+|+.+. ..
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~-------l-----~~kp~ilVlNK~DL~~~----~~ 67 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDI-------L-----KNKPRIMLLNKADKADA----AV 67 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHH-------C-----SSSCEEEEEECGGGSCH----HH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHH-------H-----CCCCEEEEEECcccCCH----HH
Confidence 3578865 455666778899999999999999877642 2222 1 16799999999999852 11
Q ss_pred HHHHHHHHHhcCCCcEEEeeeccCCCHHHHHHHHHHHHh
Q 029929 139 EKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIAKNAL 177 (185)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~~~~ 177 (185)
.+....+....+ .+++.+||.++.|++++++.+.+.+.
T Consensus 68 ~~~~~~~~~~~g-~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 68 TQQWKEHFENQG-IRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHHHHHHTTT-CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CcEEEEECCCcccHHHHHHHHHHHHH
Confidence 222333333334 68999999999999999998888765
No 222
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.79 E-value=1.8e-08 Score=76.01 Aligned_cols=90 Identities=19% Similarity=0.061 Sum_probs=51.4
Q ss_pred EEEEEecCCChhhhc----cccc--chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCC
Q 029929 57 FTLQIWDTAGQERFQ----SLGV--AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVD 130 (185)
Q Consensus 57 ~~~~~~D~~g~~~~~----~~~~--~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~ 130 (185)
+.+.++||+|..... .... .....+|.+++|+|+....... .....+... -.+..+|+||.|..
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~-------~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEA-------TPIGSIIVTKLDGS 252 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHS-------CTTEEEEEECCSSC
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhh-------CCCeEEEEECCCCc
Confidence 678899999932211 1111 1223579999999998643222 222333321 12567999999986
Q ss_pred CCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 131 GGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
.. ...+.......+ .|+.+++. |+++
T Consensus 253 ~~------gG~~ls~~~~~g-~PI~fig~--Ge~v 278 (443)
T 3dm5_A 253 AK------GGGALSAVAATG-APIKFIGT--GEKI 278 (443)
T ss_dssp SS------HHHHHHHHHTTC-CCEEEEEC--SSST
T ss_pred cc------ccHHHHHHHHHC-CCEEEEEc--CCCh
Confidence 53 223344444455 78887775 5543
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.72 E-value=6.9e-09 Score=74.26 Aligned_cols=57 Identities=23% Similarity=0.400 Sum_probs=35.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCCh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQ 67 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~ 67 (185)
...++|+++|.+|+|||||+|++.+.... ....++++.... .+.... .+.++||||.
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~~~---~~~l~DtpG~ 175 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKVGK---ELELLDTPGI 175 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEETT---TEEEEECCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEeCC---CEEEEECcCc
Confidence 34589999999999999999999987632 333333332221 222222 5678999994
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.66 E-value=1.1e-08 Score=72.41 Aligned_cols=56 Identities=23% Similarity=0.290 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCCCC-CCccCcceeeeEEEEEEECCcEEEEEEecCCChhh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRKFS-NQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER 69 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~ 69 (185)
++++++|.+|+|||||+|++.+.... ....++.+ .....+... ..+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T--~~~~~~~~~---~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGIT--KGIQWFSLE---NGVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------------CCSCEEECT---TSCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCc--cceEEEEeC---CCEEEEECCCccc
Confidence 58999999999999999999987653 22222222 212222222 2568999999543
No 225
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.57 E-value=4.8e-08 Score=76.27 Aligned_cols=63 Identities=22% Similarity=0.181 Sum_probs=39.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcc-eeeeEEEEE--EE-CCcEEEEEEecCCChh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATI-GADFLTKEV--QF-EDRLFTLQIWDTAGQE 68 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~-~~~~~~~~~--~~-~~~~~~~~~~D~~g~~ 68 (185)
.....|+|+|.+|+|||||+|+|++....-....++ +.+.....+ .. ......+.++||||..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~ 102 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLG 102 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcC
Confidence 456899999999999999999999876421111111 111112111 11 1233478899999944
No 226
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.55 E-value=3.9e-07 Score=68.87 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
+..|+++|++|+||||++..|..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999864
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.53 E-value=4.8e-08 Score=73.60 Aligned_cols=91 Identities=18% Similarity=0.050 Sum_probs=51.6
Q ss_pred EEEEEEecCCChhh--hc----ccccc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 029929 56 LFTLQIWDTAGQER--FQ----SLGVA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKT 127 (185)
Q Consensus 56 ~~~~~~~D~~g~~~--~~----~~~~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~ 127 (185)
.+.+.++||||... .. ..... .....|.+++|+|+....... .....+.+.. .+..+|+||.
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~-------~~~gVIlTKl 248 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS-------PIGSVIITKM 248 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC-------SSEEEEEECG
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc-------CCcEEEEecc
Confidence 45678999999432 11 11111 112468999999998643222 2223333222 2578999999
Q ss_pred CCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCH
Q 029929 128 DVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNV 165 (185)
Q Consensus 128 Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 165 (185)
|.... ...........+ .|+.+++. |+++
T Consensus 249 D~~a~------~G~als~~~~~g-~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 249 DGTAK------GGGALSAVVATG-ATIKFIGT--GEKI 277 (433)
T ss_dssp GGCSC------HHHHHHHHHHHT-CEEEEEEC--CSSS
T ss_pred ccccc------chHHHHHHHHHC-CCEEEEEC--CCCh
Confidence 97643 223334444455 78887775 5543
No 228
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.46 E-value=4.9e-07 Score=71.32 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..++|+|+.|||||||++.+.+..
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999874
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.44 E-value=8.1e-08 Score=67.97 Aligned_cols=93 Identities=15% Similarity=0.003 Sum_probs=60.4
Q ss_pred CCChhh-hcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHH
Q 029929 64 TAGQER-FQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKA 142 (185)
Q Consensus 64 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~ 142 (185)
.|||.. ........+..+|+++.|+|+.+|.+.... .+. .. ++|.++|+||+|+.+. ...+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~-----~l~-ll------~k~~iivlNK~DL~~~----~~~~~~ 67 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY-----GVD-FS------RKETIILLNKVDIADE----KTTKKW 67 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT-----TSC-CT------TSEEEEEEECGGGSCH----HHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh-----HHH-hc------CCCcEEEEECccCCCH----HHHHHH
Confidence 466543 334566778899999999999987665421 011 11 5699999999999863 112233
Q ss_pred HHHHHhcCCCcEEEeeeccCCCHHHHHHHHHH
Q 029929 143 KAWCASKGNIPYFETSAKEGFNVEAAFECIAK 174 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~s~~~~~~i~~~~~~i~~ 174 (185)
..+....+ .++ .+||.++.|++++++.+..
T Consensus 68 ~~~~~~~g-~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 68 VEFFKKQG-KRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHTT-CCE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHcC-CeE-EEECCCCcCHHHHHHHHHH
Confidence 33344444 677 9999999999999887643
No 230
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.42 E-value=7.9e-07 Score=64.04 Aligned_cols=92 Identities=18% Similarity=0.087 Sum_probs=53.2
Q ss_pred EEEEEEecCCChhh--hcc-ccc-----chhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCc-EEEEEeC
Q 029929 56 LFTLQIWDTAGQER--FQS-LGV-----AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFP-FVVLGNK 126 (185)
Q Consensus 56 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK 126 (185)
.+.+.++||||... ... ... .....+|.+++|+|+.... ........+.. ..| ..+|+||
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~--------~~~i~gvVlnk 248 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ--------ASKIGTIIITK 248 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH--------TCTTEEEEEEC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh--------hCCCCEEEEeC
Confidence 35688999999554 211 111 1234689999999987432 22222233322 234 6789999
Q ss_pred CCCCCCCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 127 TDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 127 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
.|.... ...........+ .|+.+++ .|+++++
T Consensus 249 ~D~~~~------~g~~~~~~~~~~-~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 249 MDGTAK------GGGALSAVAATG-ATIKFIG--TGEKIDE 280 (297)
T ss_dssp GGGCTT------HHHHHHHHHTTT-CCEEEEE--CSSSTTC
T ss_pred CCCCcc------hHHHHHHHHHHC-cCEEEEe--CCCChhh
Confidence 997542 223344555555 7887776 5666544
No 231
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=1.7e-07 Score=67.66 Aligned_cols=91 Identities=13% Similarity=0.030 Sum_probs=59.2
Q ss_pred cccchhccCcEEEEEEECCChhhHHH-HHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCC
Q 029929 73 LGVAFYRGADCCVLVYDVNVMKSFDN-LNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGN 151 (185)
Q Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 151 (185)
+....+.++|.+++|+|+.+|..... +.+++... ... ++|.++|+||+|+.+........+...+.....+
T Consensus 79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~----~~~---~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g- 150 (307)
T 1t9h_A 79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV----EAN---DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIG- 150 (307)
T ss_dssp ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH----HTT---TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHT-
T ss_pred hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH----HHC---CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCC-
Confidence 33446789999999999997654433 33333322 122 6789999999999864110011234444444455
Q ss_pred CcEEEeeeccCCCHHHHHHH
Q 029929 152 IPYFETSAKEGFNVEAAFEC 171 (185)
Q Consensus 152 ~~~~~~s~~~~~~i~~~~~~ 171 (185)
.+++.+|+.++.|+++++..
T Consensus 151 ~~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 151 YDVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp CCEEECCHHHHTTCTTTGGG
T ss_pred CeEEEEecCCCCCHHHHHhh
Confidence 79999999999988776543
No 232
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.25 E-value=8.2e-06 Score=61.81 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+..-|.|+|++++|||||+|.|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 34567889999999999999999864
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.19 E-value=3.5e-06 Score=61.48 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=49.3
Q ss_pred EEEEecCCChhhhcccc----cc--hhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 58 TLQIWDTAGQERFQSLG----VA--FYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 58 ~~~~~D~~g~~~~~~~~----~~--~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.+.++|++|........ .. ..-..|-.++++|+.... .+......+.+.. + ...+++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~~------~-it~iilTKlD~~a 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEAV------K-IDGIILTKLDADA 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHHS------C-CCEEEEECGGGCS
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHhc------C-CCEEEEeCcCCcc
Confidence 45678999943221111 10 112478899999987542 2222233333221 1 3478899999643
Q ss_pred CCceeecHHHHHHHHHhcCCCcEEEeeeccCCCHHH
Q 029929 132 GNSRVVSEKKAKAWCASKGNIPYFETSAKEGFNVEA 167 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 167 (185)
. .-.+.......+ .|+.+++ +|+++++
T Consensus 283 ~------~G~~l~~~~~~~-~pi~~i~--~Ge~v~d 309 (328)
T 3e70_C 283 R------GGAALSISYVID-APILFVG--VGQGYDD 309 (328)
T ss_dssp C------CHHHHHHHHHHT-CCEEEEE--CSSSTTC
T ss_pred c------hhHHHHHHHHHC-CCEEEEe--CCCCccc
Confidence 2 122334445555 7888887 6666543
No 234
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.12 E-value=1.2e-05 Score=59.16 Aligned_cols=86 Identities=10% Similarity=0.005 Sum_probs=53.5
Q ss_pred hhccCcEEEEEEECCChhhHH-HHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCCCCceeecHHHHHHHHHhcCCCcEE
Q 029929 77 FYRGADCCVLVYDVNVMKSFD-NLNNWREEFLIQASPSDPENFPFVVLGNKTDVDGGNSRVVSEKKAKAWCASKGNIPYF 155 (185)
Q Consensus 77 ~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (185)
...++|.+++|.+. +|.... .+.+++...... ++|.++|+||+|+.+.... ...+.........+ ++++
T Consensus 127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~~-------~~~~iivlNK~DL~~~~~~-~~~~~~~~~y~~~G-~~v~ 196 (358)
T 2rcn_A 127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCETL-------QVEPLIVLNKIDLLDDEGM-DFVNEQMDIYRNIG-YRVL 196 (358)
T ss_dssp EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHHH-------TCEEEEEEECGGGCCHHHH-HHHHHHHHHHHTTT-CCEE
T ss_pred HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHhc-------CCCEEEEEECccCCCchhH-HHHHHHHHHHHhCC-CcEE
Confidence 45789999988665 454332 234443322211 6688999999999864110 01122233333445 7899
Q ss_pred EeeeccCCCHHHHHHHH
Q 029929 156 ETSAKEGFNVEAAFECI 172 (185)
Q Consensus 156 ~~s~~~~~~i~~~~~~i 172 (185)
.+|+.++.|++++...+
T Consensus 197 ~~Sa~~~~gl~~L~~~~ 213 (358)
T 2rcn_A 197 MVSSHTQDGLKPLEEAL 213 (358)
T ss_dssp ECBTTTTBTHHHHHHHH
T ss_pred EEecCCCcCHHHHHHhc
Confidence 99999999999887643
No 235
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=98.00 E-value=5.5e-07 Score=68.96 Aligned_cols=101 Identities=10% Similarity=-0.022 Sum_probs=54.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhCCCCCCccCcceeeeEEEEEEECCcEEEEEEecCCChhh--hcccc--------c
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNRKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQER--FQSLG--------V 75 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~ 75 (185)
..+..|+++|.+||||||+.++|....... ..++.............+......+||..|... .+..+ .
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~ 115 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR 115 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999987543110 011111000000000011112335788888632 22222 4
Q ss_pred chhccCcEEEEEEECCChhhHHHHHHHHHHHHh
Q 029929 76 AFYRGADCCVLVYDVNVMKSFDNLNNWREEFLI 108 (185)
Q Consensus 76 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~ 108 (185)
.++...++.++|+|.++. +.+....|...+..
T Consensus 116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 455567888999999986 34444555554443
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.84 E-value=1.2e-05 Score=53.48 Aligned_cols=23 Identities=52% Similarity=0.878 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
+++++|+.|||||||++.+.+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999987653
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.84 E-value=0.00012 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHH
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~ 29 (185)
.+..|+++|..|+||||++..|.
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA 121 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLG 121 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34678889999999999998875
No 238
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.80 E-value=1.9e-05 Score=52.17 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=22.9
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
|...+...-.|+++|++||||||+++.|.+.
T Consensus 1 m~~~~~~g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp --CCCTTSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CCccCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4444444457899999999999999988653
No 239
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.75 E-value=1.8e-05 Score=52.63 Aligned_cols=23 Identities=26% Similarity=0.709 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|++|||||||++.+.+..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999998743
No 240
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.72 E-value=2.1e-05 Score=53.14 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|+|+.|||||||++.+.+.
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999999764
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.66 E-value=2.8e-05 Score=52.59 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-++++|+.|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5789999999999999999875
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.66 E-value=3e-05 Score=51.90 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.++++|++|||||||++.+.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 35899999999999999999876
No 243
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.65 E-value=2.9e-05 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.5
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
++|+|+.|||||||++.+.+..
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 6899999999999999998643
No 244
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.63 E-value=0.00017 Score=52.08 Aligned_cols=22 Identities=36% Similarity=0.656 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|||||||+|.+. ..
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SC
T ss_pred EEEEECCCCCCHHHHHHHHH-Hh
Confidence 57899999999999999998 53
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.63 E-value=3.4e-05 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+..
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.59 E-value=4.1e-05 Score=52.58 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|+.|||||||++.+.+..
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999998754
No 247
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.58 E-value=4.3e-05 Score=52.53 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++|+|+.|||||||++.+.+..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 248
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.58 E-value=5.8e-05 Score=49.87 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 249
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.57 E-value=5.9e-05 Score=50.87 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=23.3
Q ss_pred CCccccceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 1 MASRRRMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 1 m~~~~~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
|......+..|+|+|++||||||+.+.|...
T Consensus 1 ~~~~~~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 1 MGHEAKHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp -----CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CCCcccCceEEEEECCCCCCHHHHHHHHHHC
Confidence 4444556688999999999999999999876
No 250
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.56 E-value=4.1e-05 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
....|+|+|++|||||||++.+.+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988764
No 251
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.56 E-value=5.1e-05 Score=51.19 Aligned_cols=23 Identities=26% Similarity=0.720 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-|+|+|++|||||||++.|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57889999999999999998653
No 252
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.55 E-value=5.2e-05 Score=51.64 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
--|+++|++|||||||++.|....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHST
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 357899999999999999998764
No 253
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.55 E-value=4.8e-05 Score=50.13 Aligned_cols=20 Identities=30% Similarity=0.654 Sum_probs=17.4
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 029929 10 KVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~ 29 (185)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 47899999999999999643
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.54 E-value=5.7e-05 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999998765
No 255
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=5.8e-05 Score=49.61 Aligned_cols=23 Identities=22% Similarity=0.521 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998765
No 256
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=6.6e-05 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.705 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHH
Q 029929 8 LLKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~ 29 (185)
+-.|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.51 E-value=5.1e-05 Score=52.72 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999888764
No 258
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.51 E-value=8.4e-05 Score=50.47 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+...|+|.|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998753
No 259
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.49 E-value=6.7e-05 Score=50.14 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++++|++|||||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 260
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.49 E-value=7.2e-05 Score=50.60 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..|+++|++||||||+++.|.+..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998765
No 261
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.48 E-value=8.4e-05 Score=50.54 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|+++|+.|||||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998764
No 262
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.47 E-value=7.4e-05 Score=50.47 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.|+++|++||||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998754
No 263
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.47 E-value=7.5e-05 Score=52.05 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 264
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.47 E-value=7.6e-05 Score=50.58 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.-|+|+|++||||||+++.|....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999997643
No 265
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.47 E-value=8e-05 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
|+|+||+|||||||+++|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999998653
No 266
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.46 E-value=6.2e-05 Score=51.91 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999988764
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.45 E-value=8.1e-05 Score=48.76 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|++.|++||||||+.+.|...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998754
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=8.2e-05 Score=52.52 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|+|+.|||||||++.+.+.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHh
Confidence 5899999999999999998764
No 269
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.44 E-value=8.2e-05 Score=48.78 Aligned_cols=19 Identities=26% Similarity=0.501 Sum_probs=18.0
Q ss_pred EEEEEcCCCCCHHHHHHHH
Q 029929 10 KVIILGDSGVGKTSLMNQY 28 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l 28 (185)
-|++.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999999
No 270
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.43 E-value=8e-05 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999998764
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.42 E-value=9.2e-05 Score=50.02 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|+|+|++||||||+.+.|...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998754
No 272
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.42 E-value=0.00011 Score=49.73 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
+.|+++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999976
No 273
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.42 E-value=9.2e-05 Score=49.68 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|+.|||||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998764
No 274
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.42 E-value=8.1e-05 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 46899999999999999988764
No 275
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.41 E-value=8.1e-05 Score=52.94 Aligned_cols=23 Identities=35% Similarity=0.605 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998764
No 276
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.41 E-value=0.00013 Score=49.23 Aligned_cols=26 Identities=23% Similarity=0.489 Sum_probs=22.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..+..|+|.|++||||||+.+.|...
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998753
No 277
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.40 E-value=8.6e-05 Score=49.22 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.++++|++|+|||||++.+.+.-
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987643
No 278
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.40 E-value=8.6e-05 Score=51.66 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 279
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.39 E-value=0.0001 Score=54.35 Aligned_cols=24 Identities=42% Similarity=0.594 Sum_probs=21.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~ 33 (185)
.++++|++|||||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 589999999999999999997653
No 280
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.39 E-value=0.00013 Score=50.19 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|+++|++||||||+.+.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 281
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.39 E-value=8.9e-05 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.39 E-value=0.00012 Score=49.36 Aligned_cols=23 Identities=26% Similarity=0.614 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.|+++|++||||||+.+.|...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 47899999999999999998743
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.38 E-value=7.7e-05 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|+.|||||||++.+.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999876
No 284
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.38 E-value=9.1e-05 Score=52.43 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998764
No 285
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.37 E-value=9.8e-05 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Confidence 47899999999999999988764
No 286
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.37 E-value=9.7e-05 Score=51.71 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999988764
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.37 E-value=0.0001 Score=51.02 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998764
No 288
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.37 E-value=0.00013 Score=49.81 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.37 E-value=0.00012 Score=49.46 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.|+++|++||||||+.+.+.+.
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988754
No 290
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.37 E-value=0.00012 Score=52.77 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|+|+.|||||||++.+.+-
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhhh
Confidence 6899999999999999998754
No 291
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.36 E-value=0.00013 Score=48.20 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-|++.|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999999864
No 292
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.36 E-value=0.00013 Score=49.34 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 293
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=0.0001 Score=51.86 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.36 E-value=0.00011 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57899999999999999998764
No 295
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.36 E-value=0.00012 Score=51.39 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|+.|||||||++.+.+.
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
No 296
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.36 E-value=0.0001 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998764
No 297
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.36 E-value=0.00012 Score=51.85 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|+.|||||||++.+.+.
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999986
No 298
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.35 E-value=0.00014 Score=49.68 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 299
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.35 E-value=0.00016 Score=48.33 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|++.|++||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998753
No 300
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.35 E-value=0.00017 Score=50.37 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
.+..|++.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 567899999999999999999864
No 301
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.35 E-value=0.00011 Score=51.47 Aligned_cols=23 Identities=22% Similarity=0.510 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 302
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.34 E-value=0.00018 Score=47.80 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.32 E-value=0.00019 Score=47.84 Aligned_cols=24 Identities=29% Similarity=0.520 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|+++|++||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998765
No 304
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.32 E-value=0.00018 Score=47.60 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..-++++|+.|||||||++++...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 456889999999999999999864
No 305
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.32 E-value=0.00012 Score=52.16 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999998764
No 306
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.32 E-value=0.00012 Score=51.64 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 57899999999999999998754
No 307
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.31 E-value=0.00012 Score=51.93 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998764
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.31 E-value=0.00014 Score=50.59 Aligned_cols=20 Identities=35% Similarity=0.805 Sum_probs=18.3
Q ss_pred EEEEEcCCCCCHHHHHHHHH
Q 029929 10 KVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~ 29 (185)
-++++|++|||||||++.+.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 309
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.31 E-value=0.00018 Score=49.31 Aligned_cols=23 Identities=17% Similarity=0.491 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
...|+|+|++||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998865
No 310
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.30 E-value=0.00019 Score=47.92 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
+..|++.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 311
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.30 E-value=0.00015 Score=52.59 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...-|+|+|+.|||||||++.+.+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 3467899999999999999998764
No 312
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.30 E-value=0.00013 Score=51.25 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 313
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.30 E-value=0.00018 Score=48.49 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|++.|.+||||||+.+.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999998763
No 314
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.30 E-value=0.00018 Score=47.75 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|+++|++||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998653
No 315
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=0.00016 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~~ 33 (185)
.++++|++|||||||++.+.+...
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 578999999999999999987653
No 316
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.29 E-value=0.00017 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|+|.|++||||||+.+.|...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998653
No 317
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.29 E-value=0.00019 Score=49.09 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=20.9
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
+...|+|.|++||||||+.+.|..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998865
No 318
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.29 E-value=0.00015 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|++|||||||++.+.+..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998743
No 319
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.29 E-value=8.5e-05 Score=51.34 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=14.7
Q ss_pred EEEEEcCCCCCHHHHHHHHH-hC
Q 029929 10 KVIILGDSGVGKTSLMNQYV-NR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~-~~ 31 (185)
-++|+|+.|||||||++.|. +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999998 65
No 320
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.29 E-value=0.00015 Score=53.52 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|+|+.|||||||++.+.+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999998754
No 321
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.29 E-value=0.00014 Score=51.54 Aligned_cols=23 Identities=22% Similarity=0.481 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 47899999999999999988764
No 322
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.28 E-value=0.00019 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|+++|+|||||+|....|...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988654
No 323
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.28 E-value=0.00015 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+..|+|+|++||||||+.+.|...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998643
No 324
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.28 E-value=0.00022 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
++..|++.|++||||||+.+.|..
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998865
No 325
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.27 E-value=0.00022 Score=51.76 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~ 30 (185)
..++-|+++|+.|||||||++.+..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998854
No 326
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.26 E-value=0.00019 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.664 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
...|+|.|++||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 327
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.26 E-value=0.00019 Score=47.83 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|+|.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999865
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.25 E-value=0.00017 Score=53.21 Aligned_cols=23 Identities=35% Similarity=0.574 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 36899999999999999998765
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.00018 Score=51.11 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|++|+|||||++.+.+.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999875
No 330
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.24 E-value=0.00019 Score=47.24 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|+++|++||||||+.+.|...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999988653
No 331
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.24 E-value=0.00019 Score=50.74 Aligned_cols=23 Identities=48% Similarity=0.668 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 332
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.24 E-value=0.00012 Score=47.09 Aligned_cols=23 Identities=26% Similarity=0.644 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|+|||||++.+.+..
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999988654
No 333
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.24 E-value=0.00021 Score=48.77 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
+|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 334
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.23 E-value=0.00033 Score=47.43 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
....|+++|++||||||+++.|.+.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999865
No 335
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.23 E-value=0.00012 Score=49.07 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
...|++.|++||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 336
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.22 E-value=0.00026 Score=49.39 Aligned_cols=23 Identities=13% Similarity=0.333 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-|+++|+.|||||||++.+.+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998763
No 337
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.22 E-value=0.00028 Score=47.81 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999998764
No 338
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.22 E-value=0.00029 Score=47.50 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..|+|.|.+||||||+.+.|...-
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998753
No 339
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.21 E-value=0.00025 Score=50.73 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+.-|++.|++||||||+.+.|...
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999753
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.21 E-value=0.00031 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~ 30 (185)
..+.-|+|+|++|||||||++.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4567899999999999999988754
No 341
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.21 E-value=0.00021 Score=52.63 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998765
No 342
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00027 Score=48.86 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
....|+|+|.+||||||+.+.|...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999988653
No 343
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.00033 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.+..|+|.|++||||||+.+.|...
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999988743
No 344
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.19 E-value=0.00023 Score=49.80 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|+|||||++.+.+..
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998753
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.19 E-value=0.00011 Score=48.54 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.+.|+|+.|||||||++.+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999988653
No 346
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.19 E-value=0.00019 Score=53.14 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-+++|+|+.|||||||++.+.+..
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998764
No 347
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.19 E-value=0.00022 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 46899999999999999998764
No 348
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.19 E-value=0.00023 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 46899999999999999998765
No 349
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.18 E-value=0.00023 Score=52.56 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 46899999999999999998765
No 350
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.18 E-value=0.00031 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..+.++|++|||||||+.++...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999998754
No 351
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.17 E-value=0.00024 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHhcCC
Confidence 46899999999999999998765
No 352
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.16 E-value=6.1e-05 Score=54.36 Aligned_cols=23 Identities=39% Similarity=0.614 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|||||||+|.+.+..
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHhcccc
Confidence 68999999999999999998654
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.16 E-value=0.00025 Score=47.10 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.|+++|++||||||+.+.|...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988653
No 354
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.16 E-value=0.00041 Score=46.12 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.1
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
....|+++|.+||||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3467899999999999999988654
No 355
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.16 E-value=0.00021 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999988764
No 356
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.16 E-value=0.00027 Score=47.39 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|++.|++||||||+.+.|...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988754
No 357
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.15 E-value=0.00025 Score=52.57 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 46899999999999999998765
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.15 E-value=0.00026 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 46899999999999999998764
No 359
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.15 E-value=0.00033 Score=46.35 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|++.|++||||||+.+.|...
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 56899999999999999998743
No 360
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.15 E-value=0.012 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.0
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHH
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~ 29 (185)
....-|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 345667799999999999999665
No 361
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.14 E-value=0.00034 Score=45.62 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
+|++.|.+||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998753
No 362
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.14 E-value=0.00026 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.408 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++|+|+.|||||||++.+.+.-
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHhhc
Confidence 48999999999999999998653
No 363
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.14 E-value=0.00015 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 68899999999999999887654
No 364
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.14 E-value=0.00029 Score=52.36 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|+|++|||||||++.+.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999998764
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.13 E-value=0.00037 Score=47.06 Aligned_cols=23 Identities=43% Similarity=0.342 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
..-|+++|+.||||||+++.+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998865
No 366
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.13 E-value=0.00025 Score=52.46 Aligned_cols=23 Identities=30% Similarity=0.668 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|+.|||||||++.+.+..
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~ 199 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEI 199 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 68999999999999999998754
No 367
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.13 E-value=0.00024 Score=49.81 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=21.9
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..+..|+++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34578999999999999999998653
No 368
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.13 E-value=0.00029 Score=50.85 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
.-.++++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999999864
No 369
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.12 E-value=0.00031 Score=49.32 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-|+|+|++|||||||.+.|...
T Consensus 3 li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhc
Confidence 4789999999999999998653
No 370
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.11 E-value=0.00035 Score=48.00 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
.|+|.|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 371
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.11 E-value=0.00033 Score=45.86 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|++.|.+||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988653
No 372
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.11 E-value=0.00042 Score=47.34 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
++.|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999876
No 373
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.11 E-value=0.00036 Score=47.35 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|+|.|.+||||||+.+.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998753
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.11 E-value=0.0004 Score=48.72 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 029929 9 LKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~ 29 (185)
..|.++|+.||||||+++.|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999987
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.10 E-value=0.0004 Score=48.89 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|++.|.+||||||+.+.|...
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999999998753
No 376
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.10 E-value=0.00024 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998764
No 377
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.10 E-value=0.00039 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.690 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.09 E-value=0.00041 Score=48.57 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.4
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
.++.|+|.|++||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998865
No 379
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.09 E-value=0.00043 Score=50.02 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..-|+|+|+.|||||||++.|.+.
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 467999999999999999998764
No 380
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.09 E-value=0.00034 Score=50.46 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
--++++|+.||||||+++.+.+
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999864
No 381
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=0.00028 Score=54.52 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|++|||||||++++.+.-
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999998754
No 382
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.08 E-value=0.00045 Score=47.32 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
|+|+|+|||||+|....|...
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999988754
No 383
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.08 E-value=0.00036 Score=46.68 Aligned_cols=22 Identities=18% Similarity=0.276 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-|++.|.+||||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998764
No 384
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.07 E-value=0.00036 Score=49.59 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|++|+|||||++.+.+..
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcChHHHHHHHHHHHc
Confidence 48999999999999999998753
No 385
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.07 E-value=0.00021 Score=52.48 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 46899999999999999998765
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.06 E-value=0.00035 Score=51.07 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.++++|++|+|||||++.+.+.-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 358999999999999999998653
No 387
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.00033 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.714 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 4789999999999999999864
No 388
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.05 E-value=0.00045 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.++.|.+.|++||||||+.+.+...
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988643
No 389
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.04 E-value=0.00041 Score=46.28 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 390
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.04 E-value=0.00027 Score=46.79 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=16.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+..|++.|.+||||||+.+.|...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999998754
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.04 E-value=0.0005 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
-.|++.|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998865
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.04 E-value=0.00044 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|+++|.+||||||+.+.|...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999988763
No 393
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.02 E-value=0.00097 Score=45.34 Aligned_cols=67 Identities=19% Similarity=0.041 Sum_probs=44.3
Q ss_pred EEEEEEecCCCh-hhhcccccchhccCcEEEEEEECCChhhHHHHHHHHHHHHhhcCCCCCCCCcEEEEEeCCCCCC
Q 029929 56 LFTLQIWDTAGQ-ERFQSLGVAFYRGADCCVLVYDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKTDVDG 131 (185)
Q Consensus 56 ~~~~~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 131 (185)
.+.+.++|+|+. ... .....+..+|.+|++...+ ..+...+..+...+.... +.++.+|+|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~------~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG------NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC------SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc------CCCEEEEEEecCCcc
Confidence 356789999885 322 2344667899999999876 344555555555554321 346889999998653
No 394
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.01 E-value=0.00045 Score=47.39 Aligned_cols=22 Identities=23% Similarity=0.557 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-++++|++|+|||||+..+...
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4788999999999999998743
No 395
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.99 E-value=0.00016 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999998754
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.98 E-value=0.00048 Score=45.56 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-.+|+|+.|||||||++++..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999864
No 397
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.97 E-value=0.00061 Score=47.75 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+-.+++.|++|+|||||++++.+.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999764
No 398
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.97 E-value=0.00058 Score=48.71 Aligned_cols=24 Identities=33% Similarity=0.378 Sum_probs=21.2
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
.++.|+|.|++||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998874
No 399
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.97 E-value=0.00021 Score=52.61 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999998765
No 400
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.00042 Score=52.86 Aligned_cols=23 Identities=39% Similarity=0.566 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|+.|||||||++.+.+..
T Consensus 140 ~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 140 RVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CEEEEESTTSSHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCcc
Confidence 68999999999999999998753
No 401
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.96 E-value=0.0006 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..+++.|++|+|||+|+..+...-
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999987643
No 402
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.95 E-value=0.00044 Score=45.61 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+++.|++|+|||++++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999988754
No 403
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.94 E-value=0.00066 Score=48.70 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
..|++.|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.94 E-value=0.00052 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
-.|+++|++||||||+.+.|..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 405
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.93 E-value=0.00064 Score=46.81 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=20.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+++.|++|+|||+|++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
No 406
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.93 E-value=0.00035 Score=48.24 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..-|+|.|+.||||||+++.+.+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 356899999999999999998775
No 407
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.92 E-value=0.00057 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
--++++|+.||||||++..+.+
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHh
Confidence 4688999999999999999864
No 408
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.89 E-value=0.00086 Score=45.02 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
-...|+++|.+||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988764
No 409
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.88 E-value=0.0006 Score=48.87 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-++|+|++|+|||||+..+...
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999999988754
No 410
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.88 E-value=0.00069 Score=46.05 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.4
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|++.|.+||||||+.+.|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 356889999999999999988654
No 411
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.87 E-value=0.00065 Score=52.09 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
--++|+|+.|||||||++.|.+
T Consensus 294 eVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHHHHH
Confidence 4688999999999999999864
No 412
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.86 E-value=0.0054 Score=44.64 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|++.|++|+|||++++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 347899999999999999999765
No 413
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.86 E-value=0.00077 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.+..+++.|++|+|||+|++++....
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567888999999999999998653
No 414
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00085 Score=42.80 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
...|++.|++|+|||++.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998764
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.85 E-value=0.00073 Score=43.42 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=17.0
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 029929 11 VIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~ 29 (185)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4789999999999999975
No 416
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.85 E-value=0.00074 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
+++++|+.|+|||||++.+.+..
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998875
No 417
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.84 E-value=0.00061 Score=46.11 Aligned_cols=22 Identities=14% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.+++.|+||+||||++.++...
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999888764
No 418
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.84 E-value=0.00077 Score=46.59 Aligned_cols=22 Identities=18% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-++++|++|+|||||+..+...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999874
No 419
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.84 E-value=0.00077 Score=45.84 Aligned_cols=21 Identities=29% Similarity=0.180 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 420
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.82 E-value=0.0011 Score=45.85 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..-|++.|++||||||+++.+....
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999987653
No 421
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.78 E-value=0.00062 Score=49.45 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
--++|+|+.|||||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 356789999999999999999764
No 422
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.78 E-value=0.00083 Score=49.90 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
-.++++|++|+|||||++.+.+
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 3688999999999999999886
No 423
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.77 E-value=0.0011 Score=46.38 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+..+++.|++|+|||++++++...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999999764
No 424
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.76 E-value=0.00088 Score=51.30 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=18.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++|+|+.|||||||++.+.+
T Consensus 31 ~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 31 VTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999875
No 425
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.76 E-value=0.00097 Score=47.69 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.-.+++.|++|+|||++++.+.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998643
No 426
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.74 E-value=0.0012 Score=45.62 Aligned_cols=25 Identities=28% Similarity=0.488 Sum_probs=20.1
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~ 30 (185)
.-..++.|+|++||||||+...|..
T Consensus 6 ~~~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 6 HHHMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp ---CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccccceeeECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998864
No 427
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.73 E-value=0.0011 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+++.|++|+|||+|++++...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999765
No 428
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.72 E-value=0.0014 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 49 ~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 49 VVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998754
No 429
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.72 E-value=0.0013 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 46899999999999999988753
No 430
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.70 E-value=0.0015 Score=46.10 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred cceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 6 RMLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 6 ~~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.....+++.|++|+|||++++++...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 34568999999999999999999865
No 431
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.70 E-value=0.0011 Score=47.61 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.+++.|++|+|||+|++++.+..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 468999999999999999998653
No 432
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.70 E-value=0.0016 Score=46.74 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.+++.|++|+|||++++.+....
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 468999999999999999987643
No 433
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.69 E-value=0.0011 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
+++++|+.|||||||++.+.+..
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 68999999999999999998765
No 434
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.0012 Score=44.72 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998754
No 435
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.68 E-value=0.0012 Score=45.34 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.++|.|++|+|||||++.+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998653
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.67 E-value=0.0014 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.0
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHh
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~ 30 (185)
....|+++|++||||||+.+.|..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999998875
No 437
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.66 E-value=0.0015 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=19.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
...+++.|++|+|||++++.+..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999987654
No 438
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.65 E-value=0.0012 Score=48.95 Aligned_cols=19 Identities=32% Similarity=0.615 Sum_probs=17.2
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 029929 11 VIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~ 29 (185)
.+|+|+.|||||||+++++
T Consensus 26 ~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4589999999999999976
No 439
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.65 E-value=0.0012 Score=47.97 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.+++.|++|+|||||++.+.+.
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999998764
No 440
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.65 E-value=0.0016 Score=47.27 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
..|+|+|++|||||||...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 441
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.63 E-value=0.0015 Score=50.90 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-++++|+.|||||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47899999999999999998754
No 442
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0017 Score=51.32 Aligned_cols=23 Identities=17% Similarity=0.514 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 105 i~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 105 VLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 57899999999999999998754
No 443
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.61 E-value=0.0013 Score=46.74 Aligned_cols=21 Identities=24% Similarity=0.292 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++|+|++|+|||||+..+..
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478899999999999998874
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.60 E-value=0.0014 Score=44.08 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..|+++|++|+|||||...|....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998764
No 445
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.60 E-value=0.0015 Score=44.05 Aligned_cols=21 Identities=33% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
.|.+.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 446
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.58 E-value=0.0012 Score=51.92 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 371 TVALVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEEEEECTTSSHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHhhcc
Confidence 68899999999999999988754
No 447
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.55 E-value=0.0022 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=19.8
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
..+|+++|++|+||||+.+.+..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46799999999999999987653
No 448
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.55 E-value=0.0019 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999988754
No 449
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.53 E-value=0.0019 Score=48.82 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 450
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.53 E-value=0.00081 Score=48.18 Aligned_cols=23 Identities=17% Similarity=0.392 Sum_probs=16.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
.+-|+|.|+.||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35699999999999999998764
No 451
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.51 E-value=0.0018 Score=42.89 Aligned_cols=21 Identities=14% Similarity=0.412 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
++|+|.++||||+|..++...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.51 E-value=0.0015 Score=49.24 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+.-|+++|++||||||+.+.|...
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 456888999999999999998754
No 453
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0019 Score=50.29 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998765
No 454
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.50 E-value=0.0017 Score=46.70 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHH
Q 029929 9 LKVIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~ 29 (185)
-.++++|+.|+||||++..+.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468899999999999998875
No 455
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.49 E-value=0.0025 Score=46.26 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=21.3
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...+++.|++|+|||+|++++...
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999765
No 456
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.0021 Score=48.57 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+-.|++.||||+|||+|++++.+.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999865
No 457
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.48 E-value=0.0025 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|+|+.|||||||++.+.+..
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999864
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.47 E-value=0.0019 Score=46.89 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.|++.|++|+|||+|++++....
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 579999999999999999998653
No 459
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.47 E-value=0.0019 Score=46.24 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=21.1
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...+++.|++|+|||++++.+...
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 460
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.0017 Score=47.86 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=20.7
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.++|.|++|+|||||++.+.+.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999998764
No 461
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.47 E-value=0.0019 Score=46.56 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHh
Q 029929 9 LKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~ 30 (185)
--|+++|++|+||||++..+..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHHHH
Confidence 4688999999999999988763
No 462
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.47 E-value=0.0023 Score=50.54 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 119 ~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 119 VVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCChHHHHHHHHhCCC
Confidence 57899999999999999998754
No 463
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0015 Score=47.92 Aligned_cols=21 Identities=19% Similarity=0.464 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhC
Q 029929 11 VIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~ 31 (185)
+++.|++|+||||+++.+.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 899999999999999998773
No 464
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.45 E-value=0.0018 Score=47.28 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.+++.|++|+||||+++.+.+.-
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987653
No 465
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.45 E-value=0.0024 Score=50.45 Aligned_cols=23 Identities=26% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998864
No 466
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.45 E-value=0.0023 Score=48.43 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+-.|++.||||+|||+|++++.+.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 458999999999999999999865
No 467
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.45 E-value=0.0019 Score=44.66 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=17.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHh
Q 029929 10 KVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~ 30 (185)
-++++|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478899999999999877653
No 468
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.44 E-value=0.0021 Score=47.54 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++|.|++|+|||||++.+....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999988654
No 469
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.44 E-value=0.0012 Score=46.43 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.5
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+...|+|.|..||||||+++.|...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~ 47 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQL 47 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999888754
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.43 E-value=0.0028 Score=45.65 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=20.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+.-|+|+|++|||||||...+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 446788999999999999999754
No 471
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.41 E-value=0.0013 Score=51.98 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCc
Confidence 67899999999999999988754
No 472
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.41 E-value=0.0023 Score=46.19 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+++.|++|+|||+|+.++...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988754
No 473
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.39 E-value=0.0014 Score=51.75 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+-.
T Consensus 383 ~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 383 KVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EEEEECCTTSSTTHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCc
Confidence 68999999999999999888654
No 474
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.39 E-value=0.0021 Score=47.32 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
-+.|+|++|||||||+..+....
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47889999999999999998653
No 475
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.38 E-value=0.0031 Score=46.00 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.-|+|+|++|||||||...|...-
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 368999999999999999997653
No 476
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.37 E-value=0.0029 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-|++.|..||||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998765
No 477
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.36 E-value=0.0025 Score=43.43 Aligned_cols=23 Identities=13% Similarity=0.410 Sum_probs=20.2
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHh
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVN 30 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~ 30 (185)
++.|++.|++||||||+.+.|..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 478
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.36 E-value=0.003 Score=49.94 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHHHHHhCCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRKF 33 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~~ 33 (185)
++++|+.|||||||++.+.+...
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSSC
T ss_pred EEEECCCCCcHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 479
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.0024 Score=47.72 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=21.5
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
+-.|++.||||+|||+|++++.+.
T Consensus 182 prGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHHHHHh
Confidence 457999999999999999999865
No 480
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.33 E-value=0.0028 Score=45.82 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
-|+|+|++|||||||...+...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 5788999999999999999765
No 481
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.0011 Score=42.24 Aligned_cols=24 Identities=13% Similarity=0.256 Sum_probs=20.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
...|++.|++|+|||++.+.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CCcEEEECCCCccHHHHHHHHHHh
Confidence 356999999999999999888754
No 482
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.32 E-value=0.0028 Score=42.90 Aligned_cols=19 Identities=37% Similarity=0.786 Sum_probs=16.7
Q ss_pred EEEEcCCCCCHHHHHHHHH
Q 029929 11 VIILGDSGVGKTSLMNQYV 29 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~ 29 (185)
.+|+|+.|+||||++.++.
T Consensus 26 ~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 4678999999999999874
No 483
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.32 E-value=0.0012 Score=51.93 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 369 ~~~ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 369 TVAFVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EEEEECSTTSSHHHHHTTTTTSS
T ss_pred EEEEECCCCChHHHHHHHHhcCC
Confidence 67899999999999999887654
No 484
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.30 E-value=0.001 Score=46.87 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.+++.|++|+|||+|++++...
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999999999764
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.28 E-value=0.0027 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHHHHHhC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~ 31 (185)
.+++.|++|+||||+++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 486
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.27 E-value=0.0026 Score=49.03 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.++++|++|+|||+|++++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999998653
No 487
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.27 E-value=0.0028 Score=46.75 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.|++.|++|+|||+|++++...
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~ 107 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATE 107 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHH
Confidence 46999999999999999999865
No 488
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.26 E-value=0.0031 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=21.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
...|++.|++|+|||++++.+....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhc
Confidence 3578999999999999999998764
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0029 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.+++.|++|+|||++++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998754
No 490
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=96.26 E-value=0.0016 Score=51.27 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHHHHHhCC
Q 029929 10 KVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 10 ~i~viG~~~~GKstli~~l~~~~ 32 (185)
.++++|+.|||||||++.+.+..
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 371 LVAVLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EEEEECSSSSSHHHHHHTTTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 67899999999999999887654
No 491
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.25 E-value=0.0027 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
-.++++|++|+|||||++.+.+..
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 368999999999999999987643
No 492
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.24 E-value=0.0028 Score=48.15 Aligned_cols=23 Identities=35% Similarity=0.509 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.+++.|++|+|||||++.+.+.
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~ 153 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNY 153 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998754
No 493
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.22 E-value=0.0018 Score=50.52 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
..|+++|+.|||||||++.|.+..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhh
Confidence 578999999999999999987654
No 494
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.22 E-value=0.0024 Score=47.13 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~ 31 (185)
.-.+++.|++|+||||+++.+...
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999998754
No 495
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.21 E-value=0.048 Score=39.37 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=17.4
Q ss_pred EEEEcCCCCCHHHHHHHHHhCC
Q 029929 11 VIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 11 i~viG~~~~GKstli~~l~~~~ 32 (185)
+++-|++|+|||++++++...-
T Consensus 51 ~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHHT
T ss_pred EEeeCcCCCCHHHHHHHHHHHh
Confidence 4445669999999999997653
No 496
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.21 E-value=0.0042 Score=40.84 Aligned_cols=24 Identities=29% Similarity=0.616 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~~ 32 (185)
.-|++.|++|+||||+.-.|..+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcC
Confidence 468999999999999999998764
No 497
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.21 E-value=0.0036 Score=47.96 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHHhC
Q 029929 9 LKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 9 ~~i~viG~~~~GKstli~~l~~~ 31 (185)
-.|++.|++|+|||+|++++.+.
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999874
No 498
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.20 E-value=0.0037 Score=46.08 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.7
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
....|++.|++|+|||+|++++...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999764
No 499
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0025 Score=46.20 Aligned_cols=25 Identities=16% Similarity=0.097 Sum_probs=21.6
Q ss_pred ceeEEEEEcCCCCCHHHHHHHHHhC
Q 029929 7 MLLKVIILGDSGVGKTSLMNQYVNR 31 (185)
Q Consensus 7 ~~~~i~viG~~~~GKstli~~l~~~ 31 (185)
..-.+++.|+||+|||++++.+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999998754
No 500
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.18 E-value=0.0031 Score=46.71 Aligned_cols=25 Identities=20% Similarity=0.448 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCCHHHHHHHHHhCC
Q 029929 8 LLKVIILGDSGVGKTSLMNQYVNRK 32 (185)
Q Consensus 8 ~~~i~viG~~~~GKstli~~l~~~~ 32 (185)
...+++.|++|+|||++++.+....
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999988654
Done!