BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>029932
MGEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNV
VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPR
SFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAVGGGGVFVFTKA
QPLEL

High Scoring Gene Products

Symbol, full name Information P value
AT2G46910 protein from Arabidopsis thaliana 8.4e-74
FIB4
AT3G23400
protein from Arabidopsis thaliana 0.00058

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  029932
        (185 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2041454 - symbol:AT2G46910 species:3702 "Arabi...   745  8.4e-74   1
TAIR|locus:2090890 - symbol:FIB4 "fibrillin 4" species:37...   106  0.00058   1


>TAIR|locus:2041454 [details] [associations]
            symbol:AT2G46910 species:3702 "Arabidopsis thaliana"
            [GO:0005198 "structural molecule activity" evidence=IEA]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM;IEA;IDA] [GO:0010287 "plastoglobule"
            evidence=IDA] InterPro:IPR006843 Pfam:PF04755 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005198 EMBL:AC004411 GO:GO:0010287
            EMBL:AY062597 EMBL:AY093345 EMBL:AY085727 IPI:IPI00531984
            RefSeq:NP_566091.1 UniGene:At.27400 UniGene:At.63511 STRING:Q8W4F1
            PaxDb:Q8W4F1 PRIDE:Q8W4F1 EnsemblPlants:AT2G46910.1 GeneID:819304
            KEGG:ath:AT2G46910 GeneFarm:4657 TAIR:At2g46910 eggNOG:NOG308149
            HOGENOM:HOG000006134 InParanoid:Q8W4F1 OMA:NIYLQFE
            ProtClustDB:CLSN2688974 Genevestigator:Q8W4F1 Uniprot:Q8W4F1
        Length = 284

 Score = 745 (267.3 bits), Expect = 8.4e-74, P = 8.4e-74
 Identities = 145/184 (78%), Positives = 165/184 (89%)

Query:     2 GEPIDLVKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVV 61
             GE ID VKLDGTWRLQYTSAPDV+VLFEAA+RLPFF+VGQ+FQKFECRD+SDGG+I NVV
Sbjct:   101 GEEIDPVKLDGTWRLQYTSAPDVVVLFEAASRLPFFQVGQVFQKFECRDRSDGGIIRNVV 160

Query:    62 RWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRS 121
             +WS+P LLE++EGATLVV+AKFD VS RNIYLQFEE++V+NI I+E+LQALIAPAILPRS
Sbjct:   161 QWSLPSLLEEQEGATLVVTAKFDKVSSRNIYLQFEEISVRNININEQLQALIAPAILPRS 220

Query:   122 FLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLDNNMLLGRAXXXXXXXXXTKAQ 181
             FLSLQ+LQFIR FKAQIPV  T+PGRRSVGGLYYLSYLDNNMLLGR+         TK+Q
Sbjct:   221 FLSLQLLQFIRTFKAQIPVNATSPGRRSVGGLYYLSYLDNNMLLGRSVGGGGVFVFTKSQ 280

Query:   182 PLEL 185
             PLEL
Sbjct:   281 PLEL 284


>TAIR|locus:2090890 [details] [associations]
            symbol:FIB4 "fibrillin 4" species:3702 "Arabidopsis
            thaliana" [GO:0005198 "structural molecule activity"
            evidence=IEA;ISS] [GO:0009507 "chloroplast" evidence=ISM;IEA;IDA]
            [GO:0031977 "thylakoid lumen" evidence=IDA] [GO:0009579 "thylakoid"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009535
            "chloroplast thylakoid membrane" evidence=IDA] [GO:0010287
            "plastoglobule" evidence=IDA] [GO:0005886 "plasma membrane"
            evidence=IDA] [GO:0016020 "membrane" evidence=IDA] [GO:0009534
            "chloroplast thylakoid" evidence=IDA] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009658 "chloroplast organization"
            evidence=IMP] [GO:0010193 "response to ozone" evidence=IMP]
            [GO:0042742 "defense response to bacterium" evidence=IMP]
            InterPro:IPR006843 Pfam:PF04755 GO:GO:0005886 GO:GO:0005634
            EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005198 GO:GO:0042742
            PROSITE:PS00213 GO:GO:0009941 GO:GO:0009658 GO:GO:0010193
            GO:GO:0009535 GO:GO:0010287 GO:GO:0031977 EMBL:AB015474
            EMBL:AY383618 EMBL:AY086921 EMBL:BT024911 IPI:IPI00548427
            RefSeq:NP_566728.1 UniGene:At.5610 IntAct:Q9LW57 STRING:Q9LW57
            PaxDb:Q9LW57 PRIDE:Q9LW57 EnsemblPlants:AT3G23400.1 GeneID:821921
            KEGG:ath:AT3G23400 GeneFarm:2859 TAIR:At3g23400 eggNOG:NOG237383
            HOGENOM:HOG000240662 InParanoid:Q9LW57 OMA:ATLAHKF
            ProtClustDB:CLSN2688694 Genevestigator:Q9LW57 Uniprot:Q9LW57
        Length = 284

 Score = 106 (42.4 bits), Expect = 0.00058, P = 0.00058
 Identities = 44/133 (33%), Positives = 61/133 (45%)

Query:     2 GEPIDLV----KLDGTWRLQYTSAPDVLVLFEAAARLPFFKV-----GQIFQKFECRDKS 52
             G P+DL     KL G WRL Y+SA     L  +   LP  ++     GQ+FQ+ +   K 
Sbjct:   123 GGPVDLTDDLDKLQGKWRLLYSSAFSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSK- 181

Query:    53 DGGVICNV---VRWSVPPLLEKEEGATLVVSAKFDVVSVRNIYLQFEEVTVQNIYISEEL 109
             D   I  V     W  PPL   E  ATL  + KF+++    I + FE+ TV+      ++
Sbjct:   182 DFDNIAEVELGAPWPFPPL---EATATL--AHKFELLGTCKIKITFEKTTVKTSGNLSQI 236

Query:   110 QALIAPAILPRSF 122
                  P  LP SF
Sbjct:   237 PPFDIPR-LPDSF 248


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.140   0.407    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      185       176   0.00081  109 3  11 22  0.37    32
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  141 KB (2087 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.34u 0.10s 14.44t   Elapsed:  00:00:01
  Total cpu time:  14.34u 0.10s 14.44t   Elapsed:  00:00:01
  Start:  Fri May 10 01:15:53 2013   End:  Fri May 10 01:15:54 2013

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