Query 029932
Match_columns 185
No_of_seqs 106 out of 297
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:55:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029932.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029932hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04755 PAP_fibrillin: PAP_fi 100.0 5.9E-32 1.3E-36 219.8 15.7 154 3-178 43-198 (198)
2 PF14869 DUF4488: Domain of un 82.6 12 0.00026 29.2 8.2 62 9-91 2-65 (133)
3 COG3908 Uncharacterized protei 35.6 81 0.0018 22.0 4.0 15 154-168 13-27 (77)
4 COG2088 SpoVG Uncharacterized 31.4 73 0.0016 23.3 3.4 28 149-178 16-47 (95)
5 PF08212 Lipocalin_2: Lipocali 31.4 1.1E+02 0.0025 23.1 4.8 33 150-183 81-116 (143)
6 TIGR03067 Planc_TIGR03067 Plan 25.1 34 0.00075 25.3 0.9 18 6-23 3-20 (107)
7 PF03076 GP3: Equine arteritis 24.5 60 0.0013 25.3 2.1 17 150-166 122-138 (160)
8 PF13596 PAS_10: PAS domain; P 24.1 62 0.0014 22.6 2.1 18 154-172 10-27 (106)
9 PF02643 DUF192: Uncharacteriz 21.0 81 0.0018 23.1 2.2 15 153-167 49-63 (108)
10 cd06397 PB1_UP1 Uncharacterize 20.6 69 0.0015 23.0 1.6 10 153-162 39-48 (82)
No 1
>PF04755 PAP_fibrillin: PAP_fibrillin; InterPro: IPR006843 This family identifies a conserved domain found in a number of plastid lipid-associated proteins (PAPs) that are thought to form together with other plastoglobulins a coat on the surface of the lipoprotein particle. The coat may contain receptors for attachment to the thylakoid membrane as well as regulatory proteins that may function in the transfer of lipids to and from the thylakoid membranes.). This entry also represents a number of putative fibrillin proteins.; GO: 0005198 structural molecule activity, 0009507 chloroplast
Probab=100.00 E-value=5.9e-32 Score=219.76 Aligned_cols=154 Identities=32% Similarity=0.595 Sum_probs=112.6
Q ss_pred CCCCc-CCcccEEEEEEecCcchhhHHHhhhcCCceeeceeeEEEeeecCCCCceEEEEEEcCC-CcccccccCeEEEEE
Q 029932 3 EPIDL-VKLDGTWRLQYTSAPDVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSV-PPLLEKEEGATLVVS 80 (185)
Q Consensus 3 ~p~~~-~~L~G~WrL~yTt~~~~~~ll~~~~~lp~~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~-p~~~~~~~g~~l~v~ 80 (185)
.|+++ ++|+|+|+|+|||+.+..++++. +++|++++|++||+||+ +++++.|+++|.. |.. . ..+.+.
T Consensus 43 ~p~~s~~~L~G~W~Lvytt~~~~~~~l~~-~~~~~~~~~~v~Q~id~----~~~~~~N~v~~~~~~~~----~-~~~~v~ 112 (198)
T PF04755_consen 43 DPADSLPLLDGRWELVYTTSPEIRSLLQR-GRLPGVRVGRVFQTIDA----DNGRVENVVELSGFPLL----E-GSVSVR 112 (198)
T ss_pred CCcCCchhcCcEEEEEeecCCCccccccc-cccccccccceEEEEEC----CCceEEEEEEEeccCce----E-EEEEEE
Confidence 56666 89999999999999998877652 56778899999999996 4889999999875 543 2 489999
Q ss_pred EEEEEccCceEEEEEEEEEEeeecccHHHHhhcCCccCccchhhHHHHHHHhhhhhcCCcccCCCCCCCcceEEEEEEec
Q 029932 81 AKFDVVSVRNIYLQFEEVTVQNIYISEELQALIAPAILPRSFLSLQILQFIRAFKAQIPVTNTTPGRRSVGGLYYLSYLD 160 (185)
Q Consensus 81 A~~e~~s~~Ri~v~F~~~~l~~~~i~~~~~~ll~~~~~p~~~~~~q~~~~~~~~~~~~Pl~~~~~g~~~~~Gwld~TYLD 160 (185)
|++++.+++|+.++|+++.+++..+. +.++.+ +...+. .+-+.....+|++.+.++. .++|||||||||
T Consensus 113 a~~~~~~~~rv~v~f~~~~l~~~~~l---~~~l~~--~~~~~~-----~v~~~~~~~~~~~~~~~~~-~~~g~l~~tYLD 181 (198)
T PF04755_consen 113 ASLEVRSPRRVEVTFERASLKPPSLL---KGVLGP--LKDALN-----NVPRGISDELPVPLPLPGG-SPKGWLDTTYLD 181 (198)
T ss_pred EEEEEccccEEEEEEEeeEEccccee---eccchh--hhhhhh-----hcccccccccccccccCCC-CCceEEEEEEEC
Confidence 99999999999999999999653321 000100 000000 0001112345555555543 478999999999
Q ss_pred CCeEEEeecCCCcEEEEE
Q 029932 161 NNMLLGRAVGGGGVFVFT 178 (185)
Q Consensus 161 edlRI~Rg~d~G~vFVl~ 178 (185)
|||||+||+ +|++|||.
T Consensus 182 edlRI~Rg~-~G~~fVl~ 198 (198)
T PF04755_consen 182 EDLRISRGN-KGSLFVLK 198 (198)
T ss_pred CCeEEEEcC-CCCEEEeC
Confidence 999999995 99999984
No 2
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=82.57 E-value=12 Score=29.23 Aligned_cols=62 Identities=23% Similarity=0.408 Sum_probs=41.1
Q ss_pred CcccEEEEE-EecCc-chhhHHHhhhcCCceeeceeeEEEeeecCCCCceEEEEEEcCCCcccccccCeEEEEEEEEEEc
Q 029932 9 KLDGTWRLQ-YTSAP-DVLVLFEAAARLPFFKVGQIFQKFECRDKSDGGVICNVVRWSVPPLLEKEEGATLVVSAKFDVV 86 (185)
Q Consensus 9 ~L~G~WrL~-yTt~~-~~~~ll~~~~~lp~~~~g~i~Q~Id~~~~~~~~~v~N~v~~~~p~~~~~~~g~~l~v~A~~e~~ 86 (185)
-|.|-|+|. |-+.. ++-+ . ++.+.++-++. +++++.|+.-... .|+.++..++|+..
T Consensus 2 ~l~GVWQ~c~~~~~~~~~~g------~---l~~~~~lKilS-----~Dgtf~Ni~~~~~-------~~aiIt~~GtY~~~ 60 (133)
T PF14869_consen 2 SLQGVWQLCHYVSESPEVPG------K---LKPSNVLKILS-----DDGTFVNITMIPK-------SGAIITGYGTYEQP 60 (133)
T ss_pred CceEEEEEEEEeecCcccCc------e---EeecccEEEEc-----CCCcEEEEEEeCC-------CCcEEEEeEEEEEc
Confidence 378999999 55443 3211 1 23344455555 5899999988532 24678889999999
Q ss_pred cCceE
Q 029932 87 SVRNI 91 (185)
Q Consensus 87 s~~Ri 91 (185)
++...
T Consensus 61 sD~~Y 65 (133)
T PF14869_consen 61 SDNIY 65 (133)
T ss_pred CCccc
Confidence 88733
No 3
>COG3908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.60 E-value=81 Score=22.05 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.8
Q ss_pred EEEEEecCCeEEEee
Q 029932 154 YYLSYLDNNMLLGRA 168 (185)
Q Consensus 154 ld~TYLDedlRI~Rg 168 (185)
--|-|||.|.+|..-
T Consensus 13 a~iryldgdf~vv~~ 27 (77)
T COG3908 13 AVIRYLDGDFQVVSP 27 (77)
T ss_pred eEEEEecCceEEEcC
Confidence 458999999999875
No 4
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=31.42 E-value=73 Score=23.31 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=20.1
Q ss_pred CcceEEEEEEec----CCeEEEeecCCCcEEEEE
Q 029932 149 SVGGLYYLSYLD----NNMLLGRAVGGGGVFVFT 178 (185)
Q Consensus 149 ~~~Gwld~TYLD----edlRI~Rg~d~G~vFVl~ 178 (185)
..+++..+|+=+ .|+|+--|| +| +||-+
T Consensus 16 rmkA~vsvT~D~efVvhdirVi~G~-~G-lfVAM 47 (95)
T COG2088 16 RMKAYVSVTLDNEFVVHDIRVIEGN-NG-LFVAM 47 (95)
T ss_pred cEEEEEEEEecceEEEeccEEEeCC-cc-eEEEc
Confidence 345566676533 489999997 87 89864
No 5
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=31.41 E-value=1.1e+02 Score=23.11 Aligned_cols=33 Identities=18% Similarity=0.487 Sum_probs=26.0
Q ss_pred cceEEEEEEecCC---eEEEeecCCCcEEEEEecCCC
Q 029932 150 VGGLYYLSYLDNN---MLLGRAVGGGGVFVFTKAQPL 183 (185)
Q Consensus 150 ~~Gwld~TYLDed---lRI~Rg~d~G~vFVl~R~~~~ 183 (185)
..|-+.|.|+|.| .=++-. +.-.+|||.|....
T Consensus 81 ~~~~YwVl~~D~dY~~~iv~~~-~~~~~WILsR~p~~ 116 (143)
T PF08212_consen 81 PKGNYWVLYTDYDYSWAIVGSP-DREYLWILSRTPQL 116 (143)
T ss_dssp EEEEEEEEEEBTTSSEEEEEEC-CCCEEEEEESSSS-
T ss_pred CCcceEEEEEcCCccEEEEecC-CCCEEEEEeCCCCC
Confidence 4578999999988 455666 48889999999764
No 6
>TIGR03067 Planc_TIGR03067 Planctomycetes uncharacterized domain TIGR03067. This domain occurs in several species, mostly from the Planctomycetes division of the bacteria. It is expanded into a paralogous family of at least twenty-five members in Gemmata obscuriglobus UQM 2246. This family appears related to TIGR03066, which also is expanded into a large paralogous family in Gemmata obscuriglobus.
Probab=25.14 E-value=34 Score=25.26 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=14.8
Q ss_pred CcCCcccEEEEEEecCcc
Q 029932 6 DLVKLDGTWRLQYTSAPD 23 (185)
Q Consensus 6 ~~~~L~G~WrL~yTt~~~ 23 (185)
++..|+|+|+++-.....
T Consensus 3 dl~~LqG~W~~v~~e~~G 20 (107)
T TIGR03067 3 DLEKLQGTWKVVAAEKGG 20 (107)
T ss_pred hHHhhCcEEEEEEEEeCC
Confidence 577899999999877654
No 7
>PF03076 GP3: Equine arteritis virus GP3; InterPro: IPR004310 This entry contains proteins encoded by ORF3 of Equine arteritis virus. They are possible envelope glcoproteins.
Probab=24.47 E-value=60 Score=25.26 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.4
Q ss_pred cceEEEEEEecCCeEEE
Q 029932 150 VGGLYYLSYLDNNMLLG 166 (185)
Q Consensus 150 ~~Gwld~TYLDedlRI~ 166 (185)
.-|.+...|+|||||..
T Consensus 122 glg~~sfsfidedlrlh 138 (160)
T PF03076_consen 122 GLGQLSFSFIDEDLRLH 138 (160)
T ss_pred CcceEEEEEecccceee
Confidence 44789999999999974
No 8
>PF13596 PAS_10: PAS domain; PDB: 3CAX_A 2QKP_D.
Probab=24.12 E-value=62 Score=22.63 Aligned_cols=18 Identities=11% Similarity=0.132 Sum_probs=14.8
Q ss_pred EEEEEecCCeEEEeecCCC
Q 029932 154 YYLSYLDNNMLLGRAVGGG 172 (185)
Q Consensus 154 ld~TYLDedlRI~Rg~d~G 172 (185)
..++|+|+++||.|=| +.
T Consensus 10 ~~i~~vD~~~~I~~~n-~~ 27 (106)
T PF13596_consen 10 IGIIFVDRNLRIRYFN-PA 27 (106)
T ss_dssp SEEEEEETTSBEEEE--SC
T ss_pred CCEEEEcCCCeEEEeC-hh
Confidence 5799999999999998 44
No 9
>PF02643 DUF192: Uncharacterized ACR, COG1430; InterPro: IPR003795 This entry describes proteins of unknown function.; PDB: 3M7A_B 3PJY_B.
Probab=21.03 E-value=81 Score=23.14 Aligned_cols=15 Identities=13% Similarity=0.250 Sum_probs=11.2
Q ss_pred EEEEEEecCCeEEEe
Q 029932 153 LYYLSYLDNNMLLGR 167 (185)
Q Consensus 153 wld~TYLDedlRI~R 167 (185)
-+|+.|||+|.||..
T Consensus 49 pLDi~fld~~g~Vv~ 63 (108)
T PF02643_consen 49 PLDIAFLDSDGRVVK 63 (108)
T ss_dssp -EEEEEE-TTSBEEE
T ss_pred eEEEEEECCCCeEEE
Confidence 489999999988854
No 10
>cd06397 PB1_UP1 Uncharacterized protein 1. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=20.56 E-value=69 Score=22.99 Aligned_cols=10 Identities=30% Similarity=0.580 Sum_probs=8.8
Q ss_pred EEEEEEecCC
Q 029932 153 LYYLSYLDNN 162 (185)
Q Consensus 153 wld~TYLDed 162 (185)
.+-+||+|||
T Consensus 39 ~~~vtYiDeD 48 (82)
T cd06397 39 KVGVTYIDND 48 (82)
T ss_pred HeEEEEEcCC
Confidence 3899999997
Done!