BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029933
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZA0|A Chain A, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
pdb|2ZA0|B Chain B, Crystal Structure Of Mouse Glyoxalase I Complexed With
Methyl-Gerfelin
Length = 184
Score = 229 bits (583), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 105/161 (65%), Positives = 126/161 (78%), Gaps = 1/161 (0%)
Query: 21 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 80
D +T + +QQTM RIKDPK SLDFY+RVLG++LL++LDFP MKFSLYFL YED P
Sbjct: 24 DPSTKDFLLQQTMLRIKDPKKSLDFYTRVLGLTLLQKLDFPAMKFSLYFLAYEDKNDIPK 83
Query: 81 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 140
D ++T WTF + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 84 DKSEKTAWTFSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 142
Query: 141 ERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 181
E LGV+F KKPD GK+KG+AFI+DPD YWIEI + I I
Sbjct: 143 EELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILNPNKIATI 183
>pdb|1FRO|A Chain A, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|B Chain B, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|C Chain C, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1FRO|D Chain D, Human Glyoxalase I With Benzyl-Glutathione Inhibitor
pdb|1QIN|A Chain A, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIN|B Chain B, Human Glyoxalase I Complexed With S-(N-Hydroxy-N-P-
Iodophenylcarbamoyl) Glutathione
pdb|1QIP|A Chain A, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|B Chain B, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|C Chain C, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
pdb|1QIP|D Chain D, Human Glyoxalase I Complexed With S-P-
Nitrobenzyloxycarbonylglutathione
Length = 183
Score = 216 bits (551), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 21 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 80
D +T + +QQTM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 23 DPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 82
Query: 81 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 140
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 83 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 141
Query: 141 ERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174
E LGV+F KKPD GK+KG+AFI+DPD YWIEI +
Sbjct: 142 EELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILN 175
>pdb|3VW9|A Chain A, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
pdb|3VW9|B Chain B, Human Glyoxalase I With An N-Hydroxypyridone Inhibitor
Length = 187
Score = 216 bits (550), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 97/154 (62%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 21 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 80
D +T + +QQTM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 27 DPSTKDFLLQQTMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 86
Query: 81 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 140
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 87 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 145
Query: 141 ERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174
E LGV+F KKPD GK+KG+AFI+DPD YWIEI +
Sbjct: 146 EELGVKFVKKPDDGKMKGLAFIQDPDGYWIEILN 179
>pdb|1BH5|A Chain A, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|B Chain B, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|C Chain C, Human Glyoxalase I Q33e, E172q Double Mutant
pdb|1BH5|D Chain D, Human Glyoxalase I Q33e, E172q Double Mutant
Length = 183
Score = 214 bits (544), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 95/154 (61%), Positives = 120/154 (77%), Gaps = 1/154 (0%)
Query: 21 DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPA 80
D +T + +Q+TM R+KDPK SLDFY+RVLGM+L+++ DFP MKFSLYFL YED P
Sbjct: 23 DPSTKDFLLQETMLRVKDPKKSLDFYTRVLGMTLIQKCDFPIMKFSLYFLAYEDKNDIPK 82
Query: 81 DPVDRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERF 140
+ ++ W + AT+ELTHNWGTE D + + YHNGNS+PRGFGHIGI V DVY AC+RF
Sbjct: 83 EKDEKIAWALSRKATLELTHNWGTEDD-ETQSYHNGNSDPRGFGHIGIAVPDVYSACKRF 141
Query: 141 ERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174
E LGV+F KKPD GK+KG+AFI+DPD YWI+I +
Sbjct: 142 EELGVKFVKKPDDGKMKGLAFIQDPDGYWIQILN 175
>pdb|1F9Z|A Chain A, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1F9Z|B Chain B, Crystal Structure Of The Ni(Ii)-Bound Glyoxalase I From
Escherichia Coli
pdb|1FA5|A Chain A, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA5|B Chain B, Crystal Structure Of The Zn(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|A Chain A, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA6|B Chain B, Crystal Structure Of The Co(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|A Chain A, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA7|B Chain B, Crystal Structure Of Cd(Ii)-Bound Glyoxalase I Of
Escherichia Coli
pdb|1FA8|A Chain A, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
pdb|1FA8|B Chain B, Crystal Structure Of The Apo Form Glyoxalase I Of
Escherichia Coli
Length = 135
Score = 90.9 bits (224), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 27/154 (17%)
Query: 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW 88
+ TM R+ D + S+DFY++VLGM LL+ + PE K+SL F+GY P
Sbjct: 3 LLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFVGY-----GPET------- 50
Query: 89 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA 148
+ A IELT+NWG + Y G + +GHI ++VD+ +ACE+ + G
Sbjct: 51 ---EEAVIELTYNWGVDK------YELGTA----YGHIALSVDNAAEACEKIRQNGGNVT 97
Query: 149 KK--PDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 180
++ P G +AF++DPD Y IE+ + K G+
Sbjct: 98 REAGPVKGGTTVIAFVEDPDGYKIELIEEKDAGR 131
>pdb|2C21|A Chain A, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|B Chain B, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|C Chain C, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|D Chain D, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|E Chain E, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
pdb|2C21|F Chain F, Specificity Of The Trypanothione-Dependednt Leishmania
Major Glyoxalase I: Structure And Biochemical Comparison
With The Human Enzyme
Length = 144
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 71/150 (47%), Gaps = 28/150 (18%)
Query: 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW 88
M TM R+ D S+ FY+ LGM +L++ D PE K++L FLGY S+
Sbjct: 9 MLHTMIRVGDLDRSIKFYTERLGMKVLRKWDVPEDKYTLVFLGYGPEMSS---------- 58
Query: 89 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA 148
+ELT+N+G S +GHI I V+DV + + V
Sbjct: 59 -----TVLELTYNYGVTS----------YKHDEAYGHIAIGVEDVKELVADMRKHDVPID 103
Query: 149 KKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 178
+ + G + AF+ DPD Y+IE+ + KT+
Sbjct: 104 YEDESGFM---AFVVDPDGYYIELLNEKTM 130
>pdb|3ZW5|A Chain A, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
pdb|3ZW5|B Chain B, Crystal Structure Of The Human Glyoxalase
Domain-Containing Protein 5
Length = 147
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 16/76 (21%)
Query: 21 DEATNGYFMQQTMFR--------IKDPKVSLDFYSRVLGMSLL------KRLDFPEMKFS 66
D T + Q + R +K K + FYS++LGM ++ K L F + KF+
Sbjct: 12 DLGTENLYFQSMLIRRLDHIVMTVKSIKDTTMFYSKILGMEVMTFKEDRKALCFGDQKFN 71
Query: 67 LYFLG--YEDTASAPA 80
L+ +G +E A+ P
Sbjct: 72 LHEVGKEFEPKAAHPV 87
>pdb|4EGV|A Chain A, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|B Chain B, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|C Chain C, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|D Chain D, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|E Chain E, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
pdb|4EGV|F Chain F, Crystal Structure Of A Monomeric Scp2-Thiolase Like
Protein Type 1 (Stlp1) From Mycobacterium Smegmatis
Length = 520
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 86 TVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGI 128
V FG T L H E+ PD +G E RG+G+ GI
Sbjct: 136 VVLIFGSENTSTLRHFSKAENKPDHSETVDGQLEDRGYGYDGI 178
>pdb|2I5B|A Chain A, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|C Chain C, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|D Chain D, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|B Chain B, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
pdb|2I5B|E Chain E, The Crystal Structure Of An Adp Complex Of Bacillus
Subtilis Pyridoxal Kinase Provides Evidence For The
Parralel Emergence Of Enzyme Activity During Evolution
Length = 271
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 129 TVDDVYKACERFERLGVEFAKKPDGGKLK 157
TVDD+ +A ++ LG ++ GGKLK
Sbjct: 156 TVDDMIEAAKKIHALGAQYVVITGGGKLK 184
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 31 QTMFRIKDPKVSLDFYSRVLGM 52
QT+F+I D V L +Y+ +LGM
Sbjct: 115 QTLFKIHDKDVPLSYYTGILGM 136
>pdb|2WL9|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL9|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 118 SEPRGFGHIGITVDDVYKACERFERLGVEFA 148
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|2WL3|A Chain A, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|B Chain B, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|C Chain C, Crystal Structure Of Catechol 2,3-Dioxygenase
pdb|2WL3|D Chain D, Crystal Structure Of Catechol 2,3-Dioxygenase
Length = 305
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 118 SEPRGFGHIGITVDDVYKACERFERLGVEFA 148
+E +G GHI I DDV +A + LG+E A
Sbjct: 142 TEGQGLGHIIIREDDVEEATRFYRLLGLEGA 172
>pdb|3TJZ|B Chain B, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|E Chain E, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 355
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 13 NPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLY--FL 70
N G H EAT +F +F+ DP + Y + MS + D + SL
Sbjct: 56 NQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAE-DVIIVTSSLTKDMT 114
Query: 71 GYEDTASAPA 80
G ED+ PA
Sbjct: 115 GKEDSYRGPA 124
>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 362
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 130 VDDVYKA--CERFERLGVEFAKKPDGGKL-KGVAFIKD 164
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 319 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 356
>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|C Chain C, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|D Chain D, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|E Chain E, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|F Chain F, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|G Chain G, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
pdb|1SMK|H Chain H, Mature And Translocatable Forms Of Glyoxysomal Malate
Dehydrogenase Have Different Activities And Stabilities
But Similar Crystal Structures
Length = 326
Score = 26.9 bits (58), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 130 VDDVYKA--CERFERLGVEFAKKPDGGKL-KGVAFIKD 164
+++VY +ER+G+E AKK G + KGV+FI+
Sbjct: 283 IEEVYSLGPLNEYERIGLEKAKKELAGSIEKGVSFIRS 320
>pdb|2R84|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R84|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp And Aicar
pdb|2R85|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R85|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Amp
pdb|2R86|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R86|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Atp
pdb|2R87|A Chain A, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|B Chain B, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|C Chain C, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|D Chain D, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|E Chain E, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
pdb|2R87|F Chain F, Crystal Structure Of Purp From Pyrococcus Furiosus
Complexed With Adp
Length = 334
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 117 NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYW 169
N E + GI V +VY+ + E+ + KP G K KG KDP+D+W
Sbjct: 102 NLERKWLKKAGIRVPEVYEDPDDIEKPVI---VKPHGAKGGKGYFLAKDPEDFW 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,668,805
Number of Sequences: 62578
Number of extensions: 305221
Number of successful extensions: 633
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 601
Number of HSP's gapped (non-prelim): 27
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)