Query 029933
Match_columns 185
No_of_seqs 110 out of 1303
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 05:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029933.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029933hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02367 lactoylglutathione ly 100.0 6E-33 1.3E-37 213.5 22.1 181 4-184 51-231 (233)
2 PLN03042 Lactoylglutathione ly 100.0 1E-29 2.2E-34 191.5 21.4 179 4-182 3-181 (185)
3 KOG2944 Glyoxalase [Carbohydra 99.9 2.5E-27 5.4E-32 168.8 11.8 167 9-176 3-169 (170)
4 TIGR00068 glyox_I lactoylgluta 99.9 4E-21 8.8E-26 140.3 17.7 139 20-183 9-149 (150)
5 cd08353 Glo_EDI_BRP_like_7 Thi 99.9 1.8E-20 3.8E-25 135.3 16.2 127 28-175 3-141 (142)
6 cd07233 Glyoxalase_I Glyoxalas 99.9 2.6E-20 5.6E-25 130.3 16.5 121 29-173 1-121 (121)
7 TIGR03645 glyox_marine lactoyl 99.8 8.2E-20 1.8E-24 135.3 16.0 127 28-177 4-153 (162)
8 cd08358 Glo_EDI_BRP_like_21 Th 99.8 1.5E-19 3.3E-24 128.3 16.2 115 27-174 1-126 (127)
9 PRK10291 glyoxalase I; Provisi 99.8 9.8E-20 2.1E-24 129.5 15.3 120 33-177 1-122 (129)
10 cd07241 Glo_EDI_BRP_like_3 Thi 99.8 9.5E-20 2.1E-24 127.9 14.7 121 28-173 1-125 (125)
11 PRK11478 putative lyase; Provi 99.8 1.5E-19 3.3E-24 128.0 15.5 122 28-175 6-129 (129)
12 cd08342 HPPD_N_like N-terminal 99.8 7E-20 1.5E-24 131.7 13.8 125 29-178 1-126 (136)
13 PLN02300 lactoylglutathione ly 99.8 4.2E-19 9.1E-24 142.7 18.5 142 10-178 8-151 (286)
14 cd08352 Glo_EDI_BRP_like_1 Thi 99.8 7.6E-19 1.7E-23 123.0 15.7 121 28-174 3-125 (125)
15 cd07243 2_3_CTD_C C-terminal d 99.8 3.8E-18 8.2E-23 123.8 16.4 114 28-175 6-125 (143)
16 TIGR03081 metmalonyl_epim meth 99.8 8E-19 1.7E-23 123.9 12.0 124 28-174 1-128 (128)
17 cd08351 ChaP_like ChaP, an enz 99.8 7.2E-18 1.6E-22 118.9 14.9 110 26-175 2-121 (123)
18 cd07257 THT_oxygenase_C The C- 99.8 1.9E-18 4.2E-23 126.7 11.8 120 28-176 1-126 (153)
19 cd07263 Glo_EDI_BRP_like_16 Th 99.8 1.1E-17 2.4E-22 115.9 15.0 119 31-174 1-119 (119)
20 cd07247 SgaA_N_like N-terminal 99.8 1.2E-17 2.6E-22 115.8 14.9 113 29-174 1-114 (114)
21 cd07265 2_3_CTD_N N-terminal d 99.8 1.4E-17 3.1E-22 117.0 14.7 113 27-176 3-120 (122)
22 cd07237 BphC1-RGP6_C_like C-te 99.8 1.3E-17 2.8E-22 122.4 14.8 120 24-176 5-132 (154)
23 cd07245 Glo_EDI_BRP_like_9 Thi 99.8 6.5E-18 1.4E-22 115.9 12.1 114 29-172 1-114 (114)
24 cd09011 Glo_EDI_BRP_like_23 Th 99.8 1.3E-17 2.9E-22 116.9 13.8 117 27-175 1-119 (120)
25 cd08347 PcpA_C_like C-terminal 99.8 1.9E-17 4.2E-22 122.0 14.9 118 29-177 2-122 (157)
26 cd07255 Glo_EDI_BRP_like_12 Th 99.8 3.8E-17 8.2E-22 115.0 15.4 118 27-177 1-121 (125)
27 cd08346 PcpA_N_like N-terminal 99.8 2.3E-17 5E-22 115.7 13.7 122 28-173 1-126 (126)
28 cd07256 HPCD_C_class_II C-term 99.8 3.9E-17 8.4E-22 120.8 15.3 116 27-176 2-124 (161)
29 cd07253 Glo_EDI_BRP_like_2 Thi 99.8 4.3E-17 9.3E-22 114.0 14.7 118 28-175 3-125 (125)
30 cd08355 Glo_EDI_BRP_like_14 Th 99.8 1.3E-16 2.9E-21 111.9 16.9 120 31-175 2-122 (122)
31 cd08364 FosX FosX, a fosfomyci 99.8 3.9E-17 8.5E-22 116.7 14.3 117 28-176 4-123 (131)
32 cd09013 BphC-JF8_N_like N-term 99.8 4.6E-17 1E-21 114.3 14.0 111 28-176 6-119 (121)
33 cd07264 Glo_EDI_BRP_like_15 Th 99.8 8.2E-17 1.8E-21 113.1 15.3 122 29-175 1-125 (125)
34 PRK04101 fosfomycin resistance 99.8 5.9E-17 1.3E-21 116.8 14.8 115 28-177 4-121 (139)
35 cd08360 MhqB_like_C C-terminal 99.8 7.1E-17 1.5E-21 115.6 15.1 114 28-176 3-121 (134)
36 cd08363 FosB FosB, a fosfomyci 99.8 3.6E-17 7.7E-22 116.9 13.4 114 29-177 1-117 (131)
37 cd07242 Glo_EDI_BRP_like_6 Thi 99.7 1.1E-16 2.4E-21 113.1 15.2 118 28-175 1-128 (128)
38 cd07249 MMCE Methylmalonyl-CoA 99.7 2.9E-17 6.3E-22 115.6 12.1 123 29-174 1-128 (128)
39 cd07252 BphC1-RGP6_N_like N-te 99.7 6.7E-17 1.5E-21 113.5 13.6 110 28-176 2-118 (120)
40 cd09014 BphC-JF8_C_like C-term 99.7 1.1E-16 2.4E-21 118.9 15.5 117 28-175 6-127 (166)
41 cd08343 ED_TypeI_classII_C C-t 99.7 1.3E-16 2.9E-21 113.6 15.3 114 30-177 1-119 (131)
42 cd08354 Glo_EDI_BRP_like_13 Th 99.7 1.3E-16 2.7E-21 111.6 14.9 120 29-175 1-122 (122)
43 cd08348 BphC2-C3-RGP6_C_like T 99.7 1.7E-16 3.7E-21 113.2 15.5 120 28-178 1-123 (134)
44 cd07240 ED_TypeI_classII_N N-t 99.7 1E-16 2.3E-21 111.2 13.9 110 27-175 1-114 (117)
45 cd07238 Glo_EDI_BRP_like_5 Thi 99.7 2E-16 4.3E-21 109.5 14.7 109 31-176 3-112 (112)
46 cd08359 Glo_EDI_BRP_like_22 Th 99.7 2E-16 4.4E-21 110.4 14.5 115 31-174 4-119 (119)
47 cd07239 BphC5-RK37_C_like C-te 99.7 2.6E-16 5.7E-21 114.3 14.9 111 28-177 4-119 (144)
48 PRK06724 hypothetical protein; 99.7 2.2E-16 4.8E-21 112.5 14.1 110 26-176 5-124 (128)
49 cd07267 THT_Oxygenase_N N-term 99.7 2.8E-16 6.2E-21 109.2 14.3 108 28-175 3-110 (113)
50 cd07246 Glo_EDI_BRP_like_8 Thi 99.7 6.7E-16 1.5E-20 107.8 16.3 117 31-174 4-121 (122)
51 PF00903 Glyoxalase: Glyoxalas 99.7 1.6E-17 3.4E-22 116.5 7.9 121 28-172 1-128 (128)
52 cd09012 Glo_EDI_BRP_like_24 Th 99.7 1.6E-16 3.4E-21 112.1 12.9 120 29-174 1-123 (124)
53 cd08361 PpCmtC_N N-terminal do 99.7 2.6E-16 5.7E-21 111.3 13.9 108 28-176 6-120 (124)
54 cd07261 Glo_EDI_BRP_like_11 Th 99.7 4.2E-16 9.2E-21 108.0 14.2 110 32-174 2-114 (114)
55 cd07244 FosA FosA, a Fosfomyci 99.7 1.2E-16 2.6E-21 112.3 11.3 109 28-176 1-111 (121)
56 cd08357 Glo_EDI_BRP_like_18 Th 99.7 3.2E-16 6.9E-21 110.0 13.2 116 31-174 2-124 (125)
57 cd08362 BphC5-RrK37_N_like N-t 99.7 5E-16 1.1E-20 108.5 13.6 109 28-175 3-117 (120)
58 cd07266 HPCD_N_class_II N-term 99.7 4E-16 8.7E-21 109.3 12.7 110 28-175 4-118 (121)
59 PF12681 Glyoxalase_2: Glyoxal 99.7 2.5E-16 5.4E-21 107.9 11.2 107 34-173 1-108 (108)
60 cd07235 MRD Mitomycin C resist 99.7 4.5E-16 9.7E-21 109.2 12.7 116 29-173 1-121 (122)
61 PLN02300 lactoylglutathione ly 99.7 1E-15 2.2E-20 123.1 16.2 127 28-179 154-282 (286)
62 cd08345 Fosfomycin_RP Fosfomyc 99.7 5.2E-16 1.1E-20 107.2 12.5 107 31-174 1-110 (113)
63 TIGR03211 catechol_2_3 catecho 99.7 9.7E-16 2.1E-20 123.9 16.0 115 26-173 143-263 (303)
64 cd08344 MhqB_like_N N-terminal 99.7 8.2E-16 1.8E-20 106.6 13.1 109 28-176 2-110 (112)
65 cd08349 BLMA_like Bleomycin bi 99.7 2.1E-15 4.6E-20 103.7 14.5 108 33-174 3-112 (112)
66 cd07254 Glo_EDI_BRP_like_20 Th 99.7 2.6E-15 5.7E-20 105.0 15.1 110 30-176 3-118 (120)
67 cd07262 Glo_EDI_BRP_like_19 Th 99.7 1.7E-15 3.7E-20 106.3 14.0 112 29-173 1-122 (123)
68 cd08350 BLMT_like BLMT, a bleo 99.7 1.6E-15 3.4E-20 106.4 13.5 107 31-175 5-119 (120)
69 cd06587 Glo_EDI_BRP_like This 99.7 2.4E-15 5.2E-20 102.0 12.9 111 31-172 1-112 (112)
70 cd07258 PpCmtC_C C-terminal do 99.7 2.9E-15 6.3E-20 108.5 13.5 111 30-177 1-116 (141)
71 TIGR02295 HpaD 3,4-dihydroxyph 99.7 4.6E-15 1E-19 119.4 15.8 118 25-176 133-257 (294)
72 cd08356 Glo_EDI_BRP_like_17 Th 99.6 6.8E-15 1.5E-19 102.4 12.3 104 31-174 4-113 (113)
73 cd07251 Glo_EDI_BRP_like_10 Th 99.6 1.1E-14 2.3E-19 101.5 13.3 116 32-175 2-121 (121)
74 TIGR03211 catechol_2_3 catecho 99.6 1E-14 2.2E-19 117.9 14.5 113 27-177 3-120 (303)
75 TIGR03213 23dbph12diox 2,3-dih 99.6 1.3E-14 2.9E-19 116.4 14.7 115 26-174 140-262 (286)
76 TIGR02295 HpaD 3,4-dihydroxyph 99.6 3.7E-14 8.1E-19 114.1 15.0 112 27-177 3-117 (294)
77 TIGR03213 23dbph12diox 2,3-dih 99.6 6.4E-14 1.4E-18 112.5 13.8 110 28-176 3-119 (286)
78 KOG2943 Predicted glyoxalase [ 99.6 2.7E-14 5.8E-19 108.8 10.1 129 18-180 9-148 (299)
79 COG3565 Predicted dioxygenase 99.5 1.5E-13 3.2E-18 93.4 11.0 129 28-183 4-137 (138)
80 PF13669 Glyoxalase_4: Glyoxal 99.5 5E-14 1.1E-18 97.4 8.7 97 30-151 1-97 (109)
81 COG2514 Predicted ring-cleavag 99.5 4.3E-13 9.2E-18 104.3 13.5 122 22-177 4-128 (265)
82 COG3324 Predicted enzyme relat 99.5 1.2E-12 2.6E-17 92.1 14.1 117 28-176 9-126 (127)
83 cd07250 HPPD_C_like C-terminal 99.4 2.5E-12 5.4E-17 97.7 11.3 106 28-151 3-112 (191)
84 COG0346 GloA Lactoylglutathion 99.3 2.3E-11 5E-16 84.6 9.2 130 28-174 2-138 (138)
85 COG3607 Predicted lactoylgluta 99.3 5.2E-11 1.1E-15 82.3 10.2 122 28-175 3-127 (133)
86 TIGR01263 4HPPD 4-hydroxypheny 99.2 2.8E-10 6.1E-15 94.2 13.1 104 27-151 157-267 (353)
87 KOG2943 Predicted glyoxalase [ 99.2 7.6E-11 1.6E-15 90.1 8.8 121 28-181 149-276 (299)
88 cd06588 PhnB_like Escherichia 99.2 2.8E-09 6.1E-14 75.6 14.5 111 32-173 3-128 (128)
89 TIGR01263 4HPPD 4-hydroxypheny 99.1 1.6E-09 3.5E-14 89.6 14.2 124 28-175 2-127 (353)
90 PLN02875 4-hydroxyphenylpyruva 99.0 1.1E-09 2.3E-14 91.4 7.7 106 28-151 180-295 (398)
91 PRK01037 trmD tRNA (guanine-N( 99.0 4.8E-09 1E-13 85.1 10.7 105 28-175 247-354 (357)
92 COG2764 PhnB Uncharacterized p 99.0 6.3E-08 1.4E-12 69.2 14.7 118 32-177 4-133 (136)
93 PF14506 CppA_N: CppA N-termin 98.6 1.7E-06 3.6E-11 59.8 12.1 119 30-181 2-120 (125)
94 COG2514 Predicted ring-cleavag 98.5 2E-06 4.2E-11 67.5 9.8 33 25-57 165-197 (265)
95 COG3185 4-hydroxyphenylpyruvat 98.4 4.3E-07 9.3E-12 73.5 6.1 106 27-151 166-274 (363)
96 PF13468 Glyoxalase_3: Glyoxal 98.3 5E-06 1.1E-10 62.1 8.4 98 29-146 1-101 (175)
97 PRK10148 hypothetical protein; 98.2 0.00023 4.9E-09 51.8 15.6 51 124-175 87-141 (147)
98 KOG0638 4-hydroxyphenylpyruvat 98.1 1.3E-05 2.7E-10 64.2 7.3 101 27-151 16-120 (381)
99 PLN02875 4-hydroxyphenylpyruva 98.0 0.00015 3.1E-09 60.9 13.1 131 29-178 1-154 (398)
100 PF14696 Glyoxalase_5: Hydroxy 97.6 0.0035 7.6E-08 45.1 11.8 119 28-177 9-128 (139)
101 KOG0638 4-hydroxyphenylpyruvat 96.8 0.00097 2.1E-08 53.6 2.5 131 27-176 177-338 (381)
102 PF15067 FAM124: FAM124 family 96.6 0.033 7.1E-07 43.1 9.7 110 24-172 124-235 (236)
103 PF06983 3-dmu-9_3-mt: 3-demet 96.4 0.18 3.9E-06 35.1 12.4 41 124-173 73-116 (116)
104 PF13669 Glyoxalase_4: Glyoxal 96.4 0.0082 1.8E-07 40.9 5.0 56 124-179 1-59 (109)
105 PF14507 CppA_C: CppA C-termin 96.0 0.039 8.5E-07 37.3 6.6 26 25-51 2-27 (101)
106 KOG2944 Glyoxalase [Carbohydra 95.2 0.14 3.1E-06 37.4 7.3 61 11-74 93-159 (170)
107 cd08353 Glo_EDI_BRP_like_7 Thi 95.0 0.25 5.4E-06 34.8 8.2 47 27-74 86-132 (142)
108 TIGR03645 glyox_marine lactoyl 94.3 0.32 6.9E-06 35.6 7.6 56 122-177 4-79 (162)
109 cd08352 Glo_EDI_BRP_like_1 Thi 93.6 0.64 1.4E-05 31.3 7.7 55 122-176 3-59 (125)
110 COG3185 4-hydroxyphenylpyruvat 93.5 3.1 6.7E-05 34.4 12.4 108 28-166 22-141 (363)
111 cd08346 PcpA_N_like N-terminal 93.4 0.57 1.2E-05 31.7 7.1 56 122-177 1-62 (126)
112 cd07242 Glo_EDI_BRP_like_6 Thi 92.6 0.72 1.6E-05 31.6 6.8 52 122-177 1-56 (128)
113 cd07249 MMCE Methylmalonyl-CoA 92.3 0.67 1.4E-05 31.5 6.3 53 124-177 2-57 (128)
114 cd07245 Glo_EDI_BRP_like_9 Thi 91.4 0.96 2.1E-05 29.7 6.1 54 123-178 1-55 (114)
115 PRK11478 putative lyase; Provi 91.3 2.6 5.7E-05 28.8 8.5 28 28-56 75-102 (129)
116 PF13468 Glyoxalase_3: Glyoxal 91.2 0.21 4.6E-06 37.0 2.9 52 123-177 1-56 (175)
117 cd06587 Glo_EDI_BRP_like This 90.8 1.4 3E-05 28.5 6.4 53 125-179 1-54 (112)
118 cd08347 PcpA_C_like C-terminal 90.7 1.1 2.3E-05 32.7 6.2 52 122-176 1-54 (157)
119 PLN02367 lactoylglutathione ly 90.5 1.7 3.8E-05 34.0 7.4 54 28-101 169-222 (233)
120 cd08342 HPPD_N_like N-terminal 90.4 2.2 4.7E-05 29.9 7.4 56 28-102 69-124 (136)
121 cd07263 Glo_EDI_BRP_like_16 Th 90.2 1.8 4E-05 28.7 6.8 52 125-176 1-55 (119)
122 cd07235 MRD Mitomycin C resist 89.7 2.3 5E-05 28.8 7.0 47 124-173 2-48 (122)
123 cd07268 Glo_EDI_BRP_like_4 Thi 89.6 6.3 0.00014 28.6 9.8 28 29-56 2-29 (149)
124 PF12681 Glyoxalase_2: Glyoxal 89.5 3.4 7.4E-05 27.1 7.6 45 28-73 56-100 (108)
125 cd07233 Glyoxalase_I Glyoxalas 89.4 2.5 5.5E-05 28.3 7.0 54 123-176 1-59 (121)
126 cd07241 Glo_EDI_BRP_like_3 Thi 89.3 3.2 7E-05 27.9 7.5 54 123-176 2-57 (125)
127 PRK11700 hypothetical protein; 89.1 5.5 0.00012 30.1 8.8 32 25-56 36-67 (187)
128 cd07237 BphC1-RGP6_C_like C-te 89.1 2.8 6.1E-05 30.2 7.4 55 121-175 8-68 (154)
129 TIGR03081 metmalonyl_epim meth 88.8 2 4.3E-05 29.2 6.1 53 123-175 2-55 (128)
130 PF13670 PepSY_2: Peptidase pr 88.7 1.8 3.8E-05 28.0 5.5 50 132-181 30-79 (83)
131 PF06185 YecM: YecM protein; 88.6 5.5 0.00012 30.0 8.6 33 25-57 31-63 (185)
132 PRK10291 glyoxalase I; Provisi 88.5 3.5 7.6E-05 28.4 7.3 55 28-101 65-120 (129)
133 PLN03042 Lactoylglutathione ly 87.5 3.2 6.9E-05 31.3 6.9 54 28-101 121-174 (185)
134 cd07255 Glo_EDI_BRP_like_12 Th 86.8 4.8 0.0001 27.2 7.1 50 122-176 2-53 (125)
135 cd08358 Glo_EDI_BRP_like_21 Th 86.7 7.3 0.00016 27.4 8.0 29 122-150 2-31 (127)
136 cd07253 Glo_EDI_BRP_like_2 Thi 86.5 4.4 9.6E-05 27.1 6.8 51 122-176 3-54 (125)
137 PF00903 Glyoxalase: Glyoxalas 85.5 3.6 7.8E-05 27.6 5.9 53 122-175 1-57 (128)
138 cd08348 BphC2-C3-RGP6_C_like T 85.3 6.8 0.00015 26.9 7.3 52 123-177 2-56 (134)
139 cd07250 HPPD_C_like C-terminal 85.1 4.2 9E-05 30.6 6.5 56 122-177 3-65 (191)
140 cd08344 MhqB_like_N N-terminal 84.6 5.7 0.00012 26.5 6.5 29 122-150 2-30 (112)
141 cd08360 MhqB_like_C C-terminal 83.0 6.3 0.00014 27.4 6.4 30 27-56 61-92 (134)
142 cd07252 BphC1-RGP6_N_like N-te 82.5 8 0.00017 26.2 6.6 29 122-150 2-31 (120)
143 TIGR00068 glyox_I lactoylgluta 81.2 9.2 0.0002 27.1 6.8 46 28-74 86-132 (150)
144 cd07238 Glo_EDI_BRP_like_5 Thi 81.1 12 0.00027 24.6 7.1 28 29-57 58-85 (112)
145 cd08359 Glo_EDI_BRP_like_22 Th 80.9 9.2 0.0002 25.5 6.5 26 31-57 69-94 (119)
146 cd04895 ACT_ACR_1 ACT domain-c 80.5 6.8 0.00015 24.8 5.1 39 133-171 15-56 (72)
147 cd07257 THT_oxygenase_C The C- 80.2 10 0.00022 27.2 6.8 31 27-57 66-98 (153)
148 cd07247 SgaA_N_like N-terminal 80.0 12 0.00027 24.7 6.8 51 124-176 2-53 (114)
149 cd08364 FosX FosX, a fosfomyci 77.2 18 0.00039 24.9 7.2 54 122-177 4-61 (131)
150 cd09012 Glo_EDI_BRP_like_24 Th 77.1 13 0.00029 25.1 6.4 49 124-175 2-50 (124)
151 cd08343 ED_TypeI_classII_C C-t 76.4 16 0.00034 25.1 6.7 52 124-175 1-54 (131)
152 cd07258 PpCmtC_C C-terminal do 76.1 23 0.0005 25.0 7.6 30 27-56 55-86 (141)
153 cd07262 Glo_EDI_BRP_like_19 Th 74.9 16 0.00035 24.5 6.3 48 124-175 2-54 (123)
154 cd07240 ED_TypeI_classII_N N-t 73.6 17 0.00038 23.9 6.1 48 122-174 2-52 (117)
155 cd07264 Glo_EDI_BRP_like_15 Th 73.2 20 0.00044 23.9 6.4 27 30-57 73-99 (125)
156 cd04882 ACT_Bt0572_2 C-termina 73.0 8.3 0.00018 22.8 4.0 26 122-147 39-64 (65)
157 cd04897 ACT_ACR_3 ACT domain-c 72.3 17 0.00036 23.2 5.3 39 133-171 15-56 (75)
158 cd08351 ChaP_like ChaP, an enz 72.1 23 0.00049 23.9 6.5 49 122-175 4-53 (123)
159 cd07267 THT_Oxygenase_N N-term 71.6 25 0.00055 23.3 6.6 29 122-150 3-31 (113)
160 cd07243 2_3_CTD_C C-terminal d 71.3 25 0.00053 24.9 6.7 29 28-56 67-97 (143)
161 cd07265 2_3_CTD_N N-terminal d 69.0 10 0.00022 25.6 4.1 29 122-150 4-33 (122)
162 COG3865 Uncharacterized protei 68.7 42 0.00091 24.3 12.4 41 125-174 80-123 (151)
163 cd08361 PpCmtC_N N-terminal do 68.6 32 0.00069 23.4 6.7 48 122-174 6-55 (124)
164 cd08349 BLMA_like Bleomycin bi 68.6 28 0.0006 22.6 6.2 24 29-53 59-82 (112)
165 cd09014 BphC-JF8_C_like C-term 68.4 25 0.00054 25.6 6.4 29 122-150 6-35 (166)
166 cd08363 FosB FosB, a fosfomyci 67.2 32 0.00069 23.7 6.5 48 123-176 1-49 (131)
167 cd07256 HPCD_C_class_II C-term 66.4 31 0.00066 24.9 6.5 28 122-149 3-31 (161)
168 PRK04101 fosfomycin resistance 65.0 42 0.00092 23.3 6.8 28 28-56 63-92 (139)
169 cd07246 Glo_EDI_BRP_like_8 Thi 64.9 37 0.00081 22.4 7.6 29 28-57 68-96 (122)
170 cd07239 BphC5-RK37_C_like C-te 64.4 29 0.00063 24.6 5.9 28 122-149 4-32 (144)
171 COG0346 GloA Lactoylglutathion 63.6 13 0.00028 24.5 3.8 30 122-151 2-32 (138)
172 cd09011 Glo_EDI_BRP_like_23 Th 63.1 42 0.00092 22.4 7.0 27 29-56 65-92 (120)
173 PRK06724 hypothetical protein; 62.8 49 0.0011 22.9 7.2 29 28-56 63-93 (128)
174 cd07266 HPCD_N_class_II N-term 62.6 17 0.00037 24.3 4.3 29 122-150 4-33 (121)
175 COG3102 Uncharacterized protei 61.3 66 0.0014 24.0 7.8 29 25-53 36-64 (185)
176 cd09013 BphC-JF8_N_like N-term 61.1 19 0.0004 24.2 4.3 29 122-150 6-35 (121)
177 PF02208 Sorb: Sorbin homologo 58.7 2.7 5.9E-05 23.9 -0.3 23 29-51 12-34 (47)
178 cd07244 FosA FosA, a Fosfomyci 57.8 24 0.00052 23.7 4.4 29 122-150 1-30 (121)
179 cd08345 Fosfomycin_RP Fosfomyc 55.7 34 0.00075 22.3 4.8 28 28-56 55-84 (113)
180 cd07251 Glo_EDI_BRP_like_10 Th 54.6 57 0.0012 21.4 5.8 26 31-56 67-94 (121)
181 COG4747 ACT domain-containing 54.3 74 0.0016 22.4 7.3 27 124-150 110-136 (142)
182 cd08357 Glo_EDI_BRP_like_18 Th 54.0 60 0.0013 21.5 5.9 26 125-150 2-28 (125)
183 cd07254 Glo_EDI_BRP_like_20 Th 52.4 66 0.0014 21.3 6.8 29 28-56 58-88 (120)
184 cd08362 BphC5-RrK37_N_like N-t 52.0 27 0.00058 23.2 3.8 29 122-150 3-32 (120)
185 cd08354 Glo_EDI_BRP_like_13 Th 50.7 70 0.0015 21.0 7.4 48 124-175 2-50 (122)
186 cd04883 ACT_AcuB C-terminal AC 49.0 45 0.00097 20.1 4.2 26 124-149 43-70 (72)
187 PRK13498 chemoreceptor glutami 47.6 43 0.00093 24.8 4.5 41 129-169 113-153 (167)
188 PF07063 DUF1338: Domain of un 47.3 23 0.00049 29.0 3.2 44 30-74 36-84 (302)
189 cd07268 Glo_EDI_BRP_like_4 Thi 46.9 79 0.0017 23.0 5.6 28 124-151 3-33 (149)
190 PF03975 CheD: CheD chemotacti 46.7 33 0.00072 23.5 3.6 40 131-170 64-103 (114)
191 cd04906 ACT_ThrD-I_1 First of 45.5 41 0.00088 21.6 3.7 29 122-150 40-72 (85)
192 PRK13490 chemoreceptor glutami 45.3 48 0.001 24.4 4.4 39 131-169 112-150 (162)
193 cd08355 Glo_EDI_BRP_like_14 Th 44.5 92 0.002 20.6 7.0 28 29-57 69-96 (122)
194 PRK13495 chemoreceptor glutami 44.5 52 0.0011 24.2 4.5 40 131-170 105-144 (159)
195 PRK13494 chemoreceptor glutami 43.0 57 0.0012 24.1 4.5 39 131-169 114-152 (163)
196 cd04908 ACT_Bt0572_1 N-termina 42.4 63 0.0014 19.3 4.1 24 125-148 42-65 (66)
197 PF07494 Reg_prop: Two compone 41.4 32 0.0007 16.4 2.1 12 160-171 9-20 (24)
198 PRK13497 chemoreceptor glutami 41.3 61 0.0013 24.5 4.5 40 131-170 112-151 (184)
199 PRK11700 hypothetical protein; 40.7 1E+02 0.0023 23.3 5.6 33 122-154 39-74 (187)
200 COG1225 Bcp Peroxiredoxin [Pos 40.4 1.5E+02 0.0032 21.8 6.6 53 122-174 64-137 (157)
201 PRK13488 chemoreceptor glutami 39.2 68 0.0015 23.5 4.4 40 130-169 106-145 (157)
202 PF08445 FR47: FR47-like prote 38.8 81 0.0018 20.2 4.3 22 35-57 61-82 (86)
203 PRK13491 chemoreceptor glutami 38.2 71 0.0015 24.5 4.5 40 131-170 115-154 (199)
204 COG5397 Uncharacterized conser 38.1 35 0.00076 27.6 2.9 51 125-176 160-212 (349)
205 PRK13493 chemoreceptor glutami 37.8 70 0.0015 24.8 4.4 39 131-169 139-177 (213)
206 KOG4657 Uncharacterized conser 37.6 26 0.00057 27.3 2.0 33 38-73 146-178 (246)
207 COG2921 Uncharacterized conser 36.8 98 0.0021 20.4 4.3 32 19-50 50-81 (90)
208 PRK13487 chemoreceptor glutami 36.3 76 0.0017 24.3 4.4 41 129-169 125-165 (201)
209 PF07063 DUF1338: Domain of un 36.0 31 0.00068 28.2 2.4 30 25-55 181-216 (302)
210 cd00034 ChSh Chromo Shadow Dom 35.3 17 0.00036 21.5 0.5 18 35-52 36-53 (54)
211 KOG2792 Putative cytochrome C 34.5 70 0.0015 25.7 4.0 44 134-177 213-262 (280)
212 COG1871 CheD Chemotaxis protei 34.3 1.1E+02 0.0023 22.7 4.7 40 130-169 113-152 (164)
213 COG3607 Predicted lactoylgluta 33.5 68 0.0015 22.7 3.4 53 125-180 6-58 (133)
214 PRK13489 chemoreceptor glutami 33.5 91 0.002 24.5 4.5 39 131-169 125-163 (233)
215 PF09142 TruB_C: tRNA Pseudour 33.1 74 0.0016 18.9 3.2 41 133-177 6-46 (56)
216 cd04885 ACT_ThrD-I Tandem C-te 33.0 76 0.0016 19.2 3.3 27 122-148 38-67 (68)
217 PRK09437 bcp thioredoxin-depen 32.7 1.8E+02 0.0038 20.5 6.2 53 122-174 64-137 (154)
218 PTZ00056 glutathione peroxidas 32.5 2.2E+02 0.0047 21.5 7.0 16 159-174 147-162 (199)
219 smart00300 ChSh Chromo Shadow 32.2 30 0.00064 21.0 1.3 18 36-53 43-60 (61)
220 PF06185 YecM: YecM protein; 31.7 94 0.002 23.5 4.1 28 122-149 34-64 (185)
221 cd04896 ACT_ACR-like_3 ACT dom 30.1 1.5E+02 0.0032 18.8 4.6 37 133-170 14-55 (75)
222 cd03765 proteasome_beta_bacter 28.8 70 0.0015 25.1 3.2 25 158-182 124-148 (236)
223 PF02952 Fucose_iso_C: L-fucos 27.5 80 0.0017 22.3 3.1 27 29-55 113-139 (142)
224 PRK03467 hypothetical protein; 26.9 2.5E+02 0.0054 20.3 5.6 47 131-177 5-53 (144)
225 PF00578 AhpC-TSA: AhpC/TSA fa 26.9 1.9E+02 0.0042 19.0 5.5 49 122-170 59-122 (124)
226 cd04909 ACT_PDH-BS C-terminal 26.2 70 0.0015 19.1 2.3 23 125-147 44-69 (69)
227 PF13225 DUF4033: Domain of un 26.2 90 0.0019 20.5 2.8 28 42-69 49-76 (86)
228 PF01393 Chromo_shadow: Chromo 25.8 43 0.00092 20.1 1.2 17 37-53 41-57 (58)
229 PF13176 TPR_7: Tetratricopept 25.5 52 0.0011 17.1 1.4 17 36-52 12-28 (36)
230 COG0450 AhpC Peroxiredoxin [Po 25.4 1.3E+02 0.0028 22.9 4.0 12 158-169 125-136 (194)
231 COG0456 RimI Acetyltransferase 25.3 1E+02 0.0022 21.9 3.4 27 30-57 127-154 (177)
232 KOG2465 Uncharacterized conser 25.1 73 0.0016 26.2 2.7 24 119-142 165-188 (390)
233 cd04931 ACT_PAH ACT domain of 25.0 2.1E+02 0.0045 18.7 6.1 46 123-168 14-66 (90)
234 PHA00159 endonuclease I 24.7 1E+02 0.0022 22.2 3.1 40 134-173 21-67 (148)
235 PF14907 NTP_transf_5: Unchara 24.6 3E+02 0.0065 21.0 6.2 49 125-177 96-146 (249)
236 COG0253 DapF Diaminopimelate e 24.2 1.5E+02 0.0033 23.8 4.4 54 122-177 154-209 (272)
237 COG0077 PheA Prephenate dehydr 24.1 1.8E+02 0.0039 23.6 4.8 50 122-171 193-249 (279)
238 PF12142 PPO1_DWL: Polyphenol 23.7 1E+02 0.0022 18.4 2.5 17 159-175 11-27 (54)
239 PRK06704 RNA polymerase factor 22.8 76 0.0016 24.7 2.4 43 127-172 183-225 (228)
240 cd04926 ACT_ACR_4 C-terminal 22.7 1.9E+02 0.0042 17.6 5.4 44 126-169 4-54 (72)
241 PF02630 SCO1-SenC: SCO1/SenC; 22.6 1.8E+02 0.0039 21.3 4.3 17 158-174 156-172 (174)
242 cd03017 PRX_BCP Peroxiredoxin 22.6 2.6E+02 0.0056 19.0 6.0 53 122-174 57-127 (140)
243 PRK10146 aminoalkylphosphonic 22.2 89 0.0019 21.4 2.5 22 32-55 115-136 (144)
244 PF00379 Chitin_bind_4: Insect 22.2 1.3E+02 0.0028 17.2 2.8 16 158-173 29-44 (52)
245 PF15632 ATPgrasp_Ter: ATP-gra 22.1 1.5E+02 0.0032 24.6 4.1 48 128-175 126-176 (329)
246 PHA02754 hypothetical protein; 22.1 1.8E+02 0.004 17.6 3.4 44 133-176 20-63 (67)
247 COG4747 ACT domain-containing 21.7 2.1E+02 0.0047 20.1 4.1 27 122-148 41-67 (142)
248 cd04904 ACT_AAAH ACT domain of 21.5 2.1E+02 0.0045 17.6 5.2 35 133-167 14-51 (74)
249 COG3254 Uncharacterized conser 21.3 2.3E+02 0.0051 19.3 4.2 35 133-177 26-60 (105)
250 COG3603 Uncharacterized conser 21.3 1.1E+02 0.0023 21.5 2.6 25 124-148 103-127 (128)
251 TIGR00318 cyaB adenylyl cyclas 21.2 1.4E+02 0.0031 21.9 3.5 24 126-149 6-29 (174)
252 PTZ00330 acetyltransferase; Pr 21.1 1.3E+02 0.0027 20.6 3.1 24 31-57 118-141 (147)
253 PF13508 Acetyltransf_7: Acety 20.9 1.4E+02 0.003 18.2 3.0 14 40-54 66-79 (79)
254 PRK11899 prephenate dehydratas 20.3 2.4E+02 0.0051 22.8 4.8 47 123-169 194-247 (279)
No 1
>PLN02367 lactoylglutathione lyase
Probab=100.00 E-value=6e-33 Score=213.54 Aligned_cols=181 Identities=86% Similarity=1.423 Sum_probs=156.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCc
Q 029933 4 SEPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPV 83 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (185)
..++.....+++++..|.+.+.++.++|++|+|+|+++|++||+++|||++..+..+++.++.++|+++++....+.+..
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~t~~~~~~HtmlRVkDle~Sl~FYt~vLGm~ll~r~d~pe~~f~lyFL~~~~~~~~p~d~~ 130 (233)
T PLN02367 51 SEPKESPANNPGLSTSPDEATKGYIMQQTMYRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFMGYEDTASAPTDPT 130 (233)
T ss_pred cCCccCcccCcccccCCCCCCCCcEEEEEEEEeCCHHHHHHHHHHhcCCEEeEEEecCCCcEEEEEeecCCccccccccc
Confidence 67788888999999999999999999999999999999999999999999999888888889999998866544455555
Q ss_pred cceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEE
Q 029933 84 DRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIK 163 (185)
Q Consensus 84 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~ 163 (185)
.|.+|...+...|||.++++.+.++....|..++..+.|++||||.|+|+++++++|+++|+++...|..+.+.+.+||+
T Consensus 131 ~r~~~~~~~~~~LELt~n~g~e~~~~~~~y~~gn~~p~G~~HIaf~VdDVdaa~erL~a~Gv~~v~~P~~g~~~riaFIk 210 (233)
T PLN02367 131 ERTVWTFGQKATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFEELGVEFVKKPNDGKMKGIAFIK 210 (233)
T ss_pred cceeeccCCCCEEEEecCCCCCccccchhcccCCCCCCCceEEEEEcCCHHHHHHHHHHCCCEEEeCCccCCceEEEEEE
Confidence 68889988888999999888765444445777766667999999999999999999999999999888776656688999
Q ss_pred CCCCcEEEEeecCccccccCC
Q 029933 164 DPDDYWIEIFDLKTIGKIGGS 184 (185)
Q Consensus 164 DPdG~~iEl~~~~~~~~~~~~ 184 (185)
|||||+|||++......+.+|
T Consensus 211 DPDGn~IEL~e~~~~~~~~~~ 231 (233)
T PLN02367 211 DPDGYWIEIFDLKTIGTTTVN 231 (233)
T ss_pred CCCCCEEEEEecccccccccc
Confidence 999999999999987777665
No 2
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=99.97 E-value=1e-29 Score=191.48 Aligned_cols=179 Identities=84% Similarity=1.398 Sum_probs=141.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCc
Q 029933 4 SEPKESPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPV 83 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (185)
+++|.+|.+++|+.+|++..+.+++++|++|+|+|+++|++||+++|||++..+...+...+..++++++.....++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ht~i~V~Dle~Si~FY~~vLG~~~~~r~~~~~~~~~~~fl~~~~~~~~~~~~~ 82 (185)
T PLN03042 3 SASKESAANNPGLCGNPDEATKGYIMQQTMFRIKDPKASLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDSETAPTDPP 82 (185)
T ss_pred CCCcCCcccCcccccCCCCCCCCcEEEEEEEeeCCHHHHHHHHHhhcCCEEEEEEEcCCCceEEEEEecCCcccCCcchh
Confidence 46799999999999999999999999999999999999999999999999988876666678888887654332334444
Q ss_pred cceeeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEE
Q 029933 84 DRTVWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIK 163 (185)
Q Consensus 84 ~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~ 163 (185)
....|.+.+...|||+++.+....+....+..+.....|+.||+|.|+|+++++++|+++|+++...|..+...+.+||+
T Consensus 83 ~~~~~l~~~~~~lEL~~~~~~~~~p~~~~~~~~~~~~~G~~Hlaf~V~Dvd~~~~~L~~~Gv~v~~~p~~~~~~~~~fi~ 162 (185)
T PLN03042 83 ERTVWTFGRKATIELTHNWGTESDPEFKGYHNGNSDPRGFGHIGITVDDVYKACERFEKLGVEFVKKPDDGKMKGLAFIK 162 (185)
T ss_pred hcccccccCCCEEEEEEcCCCcccccccccccCCCCCCCccEEEEEcCCHHHHHHHHHHCCCeEEeCCccCCceeEEEEE
Confidence 56677777788999998765432221111333333335889999999999999999999999999777654444578899
Q ss_pred CCCCcEEEEeecCcccccc
Q 029933 164 DPDDYWIEIFDLKTIGKIG 182 (185)
Q Consensus 164 DPdG~~iEl~~~~~~~~~~ 182 (185)
|||||+|||++...-.-|+
T Consensus 163 DPdG~~IEl~e~~~~~~~~ 181 (185)
T PLN03042 163 DPDGYWIEIFDLKRIGGIT 181 (185)
T ss_pred CCCCCEEEEEECCCchhhc
Confidence 9999999999988755444
No 3
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=2.5e-27 Score=168.80 Aligned_cols=167 Identities=55% Similarity=0.896 Sum_probs=148.3
Q ss_pred CCCCCCCCCCCCCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceee
Q 029933 9 SPANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVW 88 (185)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (185)
++++++++.....+.+.++++.|++++|+|+.+|..||.+++|+.+.....+.+..+..+++++......|..+..+..|
T Consensus 3 s~~~~~~l~~~~~~~~~t~~~~~t~~rvkd~~~Sl~fytr~~gm~l~~~~~fke~~Fsl~fL~~~~~~~vP~~~~~~~v~ 82 (170)
T KOG2944|consen 3 SDANALGLFSRADSSTPTYLLQQTMLRVKDPTGSLKFYTRVNGMALLVPDDFKEAKFSLYFLGAEVSEDVPKPEHGVSVF 82 (170)
T ss_pred ccccchhhhcccCCCCchhhhhhceeecccchhhhhhhhhhccceeechhhhhHhhhHHHhhcccccccCccCCCCCceE
Confidence 45588888888888999999999999999999999999999999988876777777888888887666677777777799
Q ss_pred ecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCc
Q 029933 89 TFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDY 168 (185)
Q Consensus 89 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~ 168 (185)
...++..+||.++++.+.++.. .|..|+..++|++||||.|+|++.+.++|+++|+++...+.+|.+...+|+.||||+
T Consensus 83 ~~~~~~~~ELthn~Gtes~~~~-~~~ngN~~prGfgHIci~V~di~sac~~lkekGV~f~Kk~~dGk~K~iaF~~dpDgy 161 (170)
T KOG2944|consen 83 VFSRNAKLELTHNWGTESPPDQ-AYLNGNKEPRGFGHICIEVDDINSACERLKEKGVRFKKKLKDGKMKPIAFLHDPDGY 161 (170)
T ss_pred EecccCceeeecCCCCCCCcch-hhcCCCCCCCccceEEEEeCCHHHHHHHHHHhCceeeecCCCccccceeEEECCCCC
Confidence 9999999999999999876633 488888888999999999999999999999999999999999988788999999999
Q ss_pred EEEEeecC
Q 029933 169 WIEIFDLK 176 (185)
Q Consensus 169 ~iEl~~~~ 176 (185)
+|||+...
T Consensus 162 wiei~~~s 169 (170)
T KOG2944|consen 162 WIEIELES 169 (170)
T ss_pred eEEEeecC
Confidence 99998654
No 4
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=99.88 E-value=4e-21 Score=140.33 Aligned_cols=139 Identities=53% Similarity=0.877 Sum_probs=100.4
Q ss_pred CCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEe
Q 029933 20 RDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELT 99 (185)
Q Consensus 20 ~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ 99 (185)
..|.+..++++|+.|.|+|++++++||+++|||++..+...+...+..++++.++.. ....+++.
T Consensus 9 ~~~~~~~~~i~hv~l~v~Dl~~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~~~ 73 (150)
T TIGR00068 9 ADPKTKKRRLLHTMLRVGDLDKSLDFYTEVLGMKLLRKRDFPEMKFSLAFLGYGDET---------------SAAVIELT 73 (150)
T ss_pred cCcccCCceEEEEEEEecCHHHHHHHHHHhcCCEEEEEeccCCCceEEEEecCCCCC---------------CccEEEEe
Confidence 346677789999999999999999999999999987764444444455666543210 02345554
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCC--CCccceEEEEECCCCcEEEEeecCc
Q 029933 100 HNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
....... ...+ .+..|++|.|+|+++++++|.++|+++..++. .+...+.+||+|||||.|||++..+
T Consensus 74 ~~~~~~~------~~~~----~g~~hi~f~v~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iel~~~~~ 143 (150)
T TIGR00068 74 HNWGTEK------YDLG----NGFGHIAIGVDDVYKACERVRALGGNVVREPGPVKGGTTVIAFVEDPDGYKIELIQRKS 143 (150)
T ss_pred ecCCCCc------ccCC----CceeEEEEecCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEECCc
Confidence 3222111 1111 26789999999999999999999999887663 3333457889999999999999988
Q ss_pred cccccC
Q 029933 178 IGKIGG 183 (185)
Q Consensus 178 ~~~~~~ 183 (185)
-++-||
T Consensus 144 ~~~~~~ 149 (150)
T TIGR00068 144 TKDGLG 149 (150)
T ss_pred hhhhcc
Confidence 777665
No 5
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.87 E-value=1.8e-20 Score=135.27 Aligned_cols=127 Identities=17% Similarity=0.296 Sum_probs=89.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC-----------CceEEEeeccCCCCCCCCCCccceeeecCCCcEE
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATI 96 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (185)
+++|++|.|+|++++++||++ |||++..+...++ ......++..+ .+...+
T Consensus 3 ~i~Hi~i~v~Dl~~s~~FY~~-LG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------~g~~~i 64 (142)
T cd08353 3 RMDNVGIVVRDLEAAIAFFLE-LGLELEGRAEIEGEWADRVTGLDGVRVEIAMLRTP-----------------DGHSRL 64 (142)
T ss_pred eeeeEEEEeCCHHHHHHHHHH-cCCEEccccccChHHHHHhcCCCCceEEEEEEeCC-----------------CCCceE
Confidence 799999999999999999998 9998876533221 11222333221 125688
Q ss_pred EEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC-ccceEEEEECCCCcEEEEeec
Q 029933 97 ELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+|+............ . ......++.||||.|+|+++++++|+++|+++..++... ...+.+|++||||+.|||+|.
T Consensus 65 el~~~~~~~~~~~~~-~--~~~~~~g~~hia~~v~d~d~~~~~l~~~G~~~~~~~~~~~~~~r~~~~~DPdG~~iEl~e~ 141 (142)
T cd08353 65 ELSKFHHPAVIADHR-P--APVNALGLRRVMFAVDDIDARVARLRKHGAELVGEVVQYENSYRLCYIRGPEGILIELAEQ 141 (142)
T ss_pred EEEEecCCCCcCcCC-C--CCCCCCCceEEEEEeCCHHHHHHHHHHCCCceeCCceecCCCeEEEEEECCCCCEEEeeec
Confidence 888754332211100 1 011234788999999999999999999999998766433 334679999999999999985
No 6
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=99.87 E-value=2.6e-20 Score=130.27 Aligned_cols=121 Identities=60% Similarity=1.107 Sum_probs=90.6
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|.|++|.|+|++++++||+++||+++..+...++..+..+++..+... +...+++........
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~---------------~~~~~~l~~~~~~~~-- 63 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDED---------------SEGVLELTYNWGTEE-- 63 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCC---------------CccEEEEEecCCCCC--
Confidence 579999999999999999999999988765544445566677653210 034666654322211
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEe
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~ 173 (185)
+...+ .+..|++|.|+|+++++++++++|+++..+|.....++.+||+|||||+|||+
T Consensus 64 ---~~~~~----~~~~~i~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DpdG~~iE~~ 121 (121)
T cd07233 64 ---PYDNG----NGFGHLAFAVDDVYAACERLEEMGVEVTKPPGDGGMKGIAFIKDPDGYWIELI 121 (121)
T ss_pred ---CcCCC----CCeEEEEEEeCCHHHHHHHHHHCCCEEeeCCccCCCceEEEEECCCCCEEEeC
Confidence 12111 26689999999999999999999999998887665556789999999999985
No 7
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=99.85 E-value=8.2e-20 Score=135.26 Aligned_cols=127 Identities=21% Similarity=0.222 Sum_probs=86.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeee----ec--------------CCCceEEEeeccCCCCCCCCCCccceeee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL----DF--------------PEMKFSLYFLGYEDTASAPADPVDRTVWT 89 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~----~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (185)
+++|++|.|+|+++|++||+++|||++..+. .. ....+.+.++..++
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~--------------- 68 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGD--------------- 68 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCC---------------
Confidence 7999999999999999999999999876421 00 00113334443221
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeec-CC---CCc-cceEEEEEC
Q 029933 90 FGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PD---GGK-LKGVAFIKD 164 (185)
Q Consensus 90 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~-~~---~~~-~~~~~~~~D 164 (185)
+..++|+...+..... ........++.|+||.|+|+++++++|+++|+++... +. .+. ..+.+||+|
T Consensus 69 ---~~~ieL~~~~~~~~~~-----~~~~~~~~g~~Hla~~v~dida~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D 140 (162)
T TIGR03645 69 ---RIGVELFEFKNQENPE-----DNFEYWKTGVFHFCVQDPDVEGLAERIVAAGGKKRMPVPRYYYPGEKPYRMIYMED 140 (162)
T ss_pred ---CCcEEEEeccCCCCCC-----cccccccccceEEEEEcCCHHHHHHHHHHcCCcccCCCccccCCCCCceEEEEEEC
Confidence 4568888765432211 0000112478999999999999999999999876443 22 111 125799999
Q ss_pred CCCcEEEEeecCc
Q 029933 165 PDDYWIEIFDLKT 177 (185)
Q Consensus 165 PdG~~iEl~~~~~ 177 (185)
||||+|||+++..
T Consensus 141 PdG~~iEl~~~~~ 153 (162)
T TIGR03645 141 PFGNILEIYSHSY 153 (162)
T ss_pred CCCCEEEEEEcCh
Confidence 9999999999875
No 8
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.85 E-value=1.5e-19 Score=128.35 Aligned_cols=115 Identities=29% Similarity=0.498 Sum_probs=83.8
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC-----------CceEEEeeccCCCCCCCCCCccceeeecCCCcE
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPAT 95 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (185)
+++.|++|.|+|+++|++||+++|||++.++..+++ +.+..+++++... ..+..
T Consensus 1 ~~~~Hv~irV~DlerSi~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~---------------~~~~~ 65 (127)
T cd08358 1 RRALHFVFKVGNRNKTIKFYREVLGMKVLRHEEFEEGCKAACNGPYDGKWSKTMIGYGPE---------------DDHFV 65 (127)
T ss_pred CceEEEEEEeCCHHHHHHHHHHhcCCEEEeeecCccccccccccCCCCcEEEEEEecCCC---------------CCccE
Confidence 378999999999999999999999999887665544 4444455654211 01568
Q ss_pred EEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 96 IELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 96 l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
+||.++++... +..|. + |++|.|++. ++.++|+++|+++...+. ..+|++||||++|||+.
T Consensus 66 lEL~~n~~~~~------~~~g~----~--~~hlav~~~-d~~~~l~~~Gv~~~~~~~-----~~~fi~DPDG~~ie~~~ 126 (127)
T cd08358 66 VELTYNYGIGD------YELGN----D--FLGITIHSK-QAVSNAKKHNWPVTEVED-----GVYEVKAPGGYKFYLID 126 (127)
T ss_pred EEeEecCCCCC------CCCCC----C--EEEEEEECH-HHHHHHHHCCCceecCCC-----CEEEEECCCCCEEEEec
Confidence 99987765432 44332 3 566666665 556999999999887664 15899999999999985
No 9
>PRK10291 glyoxalase I; Provisional
Probab=99.85 E-value=9.8e-20 Score=129.52 Aligned_cols=120 Identities=41% Similarity=0.761 Sum_probs=86.2
Q ss_pred EEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCC
Q 029933 33 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 112 (185)
Q Consensus 33 ~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 112 (185)
+|.|+|++++++||+++|||++..+...+...+..+++..++.. ....+++...+... +
T Consensus 1 ~l~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~------~ 59 (129)
T PRK10291 1 MLRVGDLQRSIDFYTNVLGMKLLRTSENPEYKYSLAFVGYGPET---------------EEAVIELTYNWGVD------K 59 (129)
T ss_pred CEEecCHHHHHHHHHhccCCEEEEeecCCCCcEEEEEEccCCCC---------------CcceEEeeecCCCC------C
Confidence 47899999999999999999988765545555667777653210 02345665432211 1
Q ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC--ccceEEEEECCCCcEEEEeecCc
Q 029933 113 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 113 ~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
+..+ .++.||||.|+|+++++++|+++|+++...+... ...+.+||+|||||.|||++..+
T Consensus 60 ~~~g----~~~~hlaf~V~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~i~DPdG~~iel~~~~~ 122 (129)
T PRK10291 60 YELG----TAYGHIALSVDNAAEACEKIRQNGGNVTREAGPVKGGTTVIAFVEDPDGYKIELIEEKD 122 (129)
T ss_pred CcCC----CCeeEEEEEeCCHHHHHHHHHHcCCccccCCcccCCCceEEEEEECCCCCEEEEEEccc
Confidence 2222 2678999999999999999999999988655322 22246789999999999999775
No 10
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.84 E-value=9.5e-20 Score=127.86 Aligned_cols=121 Identities=24% Similarity=0.332 Sum_probs=84.2
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|++|.|+|++++++||+++|||++......+...+..+|+..++ ...++++........
T Consensus 1 ~~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~ 62 (125)
T cd07241 1 KIEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDD------------------GARLELMTRPDIAPS 62 (125)
T ss_pred CceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCC------------------CcEEEEEcCcccCCC
Confidence 57899999999999999999999999865433223334445555432 346777643221110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCcc-ceEEEEECCCCcEEEEe
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iEl~ 173 (185)
. ......++.||||.|+ ++++++++|+++|+++..+|..... .+.++++|||||+|||.
T Consensus 63 -----~--~~~~~~g~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~g~~~~~~~DPdG~~iE~~ 125 (125)
T cd07241 63 -----P--NEGERTGWAHLAFSVGSKEAVDELTERLRADGYLIIGEPRTTGDGYYESVILDPEGNRIEIT 125 (125)
T ss_pred -----c--ccCCCCceEEEEEECCCHHHHHHHHHHHHHCCCEEEeCceecCCCeEEEEEECCCCCEEEeC
Confidence 0 0112237789999996 4899999999999999886643322 34578999999999983
No 11
>PRK11478 putative lyase; Provisional
Probab=99.84 E-value=1.5e-19 Score=128.02 Aligned_cols=122 Identities=23% Similarity=0.291 Sum_probs=83.4
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC-CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
+++|++|.|+|++++++||+++|||++..+...+. ..|... +..+ +...++++.......
T Consensus 6 ~i~hv~l~v~D~~~a~~FY~~~LG~~~~~~~~~~~~~~~~~~-~~~~------------------~~~~l~l~~~~~~~~ 66 (129)
T PRK11478 6 QVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSWKGD-LALN------------------GQYVIELFSFPFPPE 66 (129)
T ss_pred eecEEEEEcCCHHHHHHHHHHHhCCEecccccccccccceee-EecC------------------CCcEEEEEEecCCCC
Confidence 68999999999999999999999999875421111 122111 1111 145677765322211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC-ccceEEEEECCCCcEEEEeec
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.+ ......++.||+|.|+|+++++++|+++|+++...+... .+.+.+||+|||||.|||++.
T Consensus 67 ~~-------~~~~~~g~~hi~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iEl~~~ 129 (129)
T PRK11478 67 RP-------SRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ 129 (129)
T ss_pred CC-------CCCCCCceeEEEEEeCCHHHHHHHHHHcCCeeeccccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 11 011223678999999999999999999999987543222 334578999999999999873
No 12
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=99.84 E-value=7e-20 Score=131.66 Aligned_cols=125 Identities=18% Similarity=0.192 Sum_probs=87.9
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|+|+.|.|+|++++++||+++|||++..+.... .....++..+ ...+++........
T Consensus 1 ~~Hi~i~V~D~e~s~~FY~~vLGf~~~~~~~~~--~~~~~~~~~g-------------------~~~l~l~~~~~~~~-- 57 (136)
T cd08342 1 FDHVEFYVGNAKQLASWFSTKLGFEPVAYHGSE--DKASYLLRQG-------------------DINFVLNSPLNSFA-- 57 (136)
T ss_pred CeEEEEEeCCHHHHHHHHHHhcCCeEEEecCCC--ceEEEEEEcC-------------------CEEEEEecCCCCCC--
Confidence 589999999999999999999999988764321 1122333221 34555543211111
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCC-CccceEEEEECCCCcEEEEeecCcc
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLKTI 178 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DPdG~~iEl~~~~~~ 178 (185)
....+. .....+..||+|.|+|+++++++|+++|+++..+|.. .+..+.+|++||||++|||+++..+
T Consensus 58 ~~~~~~--~~~~~g~~hia~~V~Dvda~~~~l~~~G~~v~~~p~~~~~~~~~~~i~dp~G~~ie~~~~~~~ 126 (136)
T cd08342 58 PVADFL--EKHGDGVCDVAFRVDDAAAAYERAVARGAKPVQEPVEEPGELKIAAIKGYGDSLHTLVDRKGY 126 (136)
T ss_pred chHHHH--HhcCCceEEEEEEeCCHHHHHHHHHHcCCeEccCceecCCeEEEEEEeccCCcEEEEEecCCC
Confidence 000000 0112367899999999999999999999999998877 3444689999999999999997764
No 13
>PLN02300 lactoylglutathione lyase
Probab=99.84 E-value=4.2e-19 Score=142.70 Aligned_cols=142 Identities=34% Similarity=0.569 Sum_probs=99.6
Q ss_pred CCCCCCCCCCCCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeee
Q 029933 10 PANNPGLHTARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWT 89 (185)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (185)
.++.--...+|.... .++.|++|.|+|++++++||+++|||++..+...+...+..+++..+...
T Consensus 8 ~~~~~~~~~~~~~~i--~~l~Hv~l~V~Dle~s~~FY~~vLG~~~~~~~~~~~~~~~~~~l~~g~~~------------- 72 (286)
T PLN02300 8 AAEAEDLLEWPKKDK--RRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYGPED------------- 72 (286)
T ss_pred ChhhhhhhcCCcccc--ceEEEEEEEeCCHHHHHHHHHHhcCCEEEEeeecCCCcEEEEEEccCCCC-------------
Confidence 333333446754433 38999999999999999999999999988765444445556666543210
Q ss_pred cCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCcc--ceEEEEECCCC
Q 029933 90 FGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDD 167 (185)
Q Consensus 90 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG 167 (185)
.+..+++....+... ... ..++.|++|.|+|+++++++++++|+++...+..... .+.+||+||||
T Consensus 73 --~~~~lel~~~~~~~~------~~~----~~g~~hia~~v~dvd~~~~~l~~~G~~i~~~~~~~~~g~~~~~~~~DPdG 140 (286)
T PLN02300 73 --SNFVVELTYNYGVDK------YDI----GTGFGHFGIAVEDVAKTVELVKAKGGKVTREPGPVKGGKSVIAFVKDPDG 140 (286)
T ss_pred --CceEEEEeccCCCCc------ccc----CCCccEEEEEeCCHHHHHHHHHHCCCeeecCCcccCCCceEEEEEECCCC
Confidence 034566654322211 111 1377899999999999999999999999877644322 34689999999
Q ss_pred cEEEEeecCcc
Q 029933 168 YWIEIFDLKTI 178 (185)
Q Consensus 168 ~~iEl~~~~~~ 178 (185)
|.|||+++...
T Consensus 141 ~~iEl~~~~~~ 151 (286)
T PLN02300 141 YKFELIQRGPT 151 (286)
T ss_pred CEEEEEeCCCC
Confidence 99999997654
No 14
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.83 E-value=7.6e-19 Score=122.98 Aligned_cols=121 Identities=23% Similarity=0.343 Sum_probs=84.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC-CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
+++|++|.|.|++++++||+++|||++.......+ ..+.+ .+..++ ...++++.......
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~-~~~~~~------------------~~~i~l~~~~~~~~ 63 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKL-DLLLNG------------------GYQLELFSFPNPPE 63 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEE-EEecCC------------------CcEEEEEEcCCCCC
Confidence 68999999999999999999999999876532222 23322 222111 34666654322211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC-ccceEEEEECCCCcEEEEee
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~ 174 (185)
.. . .....++.|++|.|+|+++++++++++|+++...+... ...+.+|++||+||.|||+|
T Consensus 64 ~~----~---~~~~~g~~h~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DP~G~~iEl~~ 125 (125)
T cd08352 64 RP----S---YPEACGLRHLAFSVEDIEAAVKHLKAKGVEVEPIRVDEFTGKRFTFFYDPDGLPLELYE 125 (125)
T ss_pred CC----C---CCcCCCceEEEEEeCCHHHHHHHHHHcCCccccccccCCCceEEEEEECCCCCEEEecC
Confidence 00 0 11223778999999999999999999999988766432 33457899999999999986
No 15
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=99.81 E-value=3.8e-18 Score=123.84 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=79.6
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCc-eEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK-FSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
+|+|++|.|+|++++++||+++|||++..+...+++. ....|+..+.. ...+.+...
T Consensus 6 ~l~Hv~l~v~Dle~s~~FY~~vLGf~~~~~~~~~~~~~~~~~~l~~~~~-----------------~h~~~~~~~----- 63 (143)
T cd07243 6 RLDHCLLTGEDIAETTRFFTDVLDFYLAERVVDPDGGTRVGSFLSCSNK-----------------PHDIAFVGG----- 63 (143)
T ss_pred eeCEEEEecCCHHHHHHHHHHhcCCEEEEEEecCCCCeEEEEEEecCCC-----------------cceEEEecC-----
Confidence 7999999999999999999999999987664322221 12334432110 222333110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHH---HHHHHHhcCCEEeecCCCCc--cceEEEEECCCCcEEEEeec
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~dv~~---~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~ 175 (185)
+ ..+++|+||.|+|+++ +.++|+++|+++...|.... .+..+||+|||||.|||++.
T Consensus 64 -------~-----~~~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~yf~DPdG~~iEl~~~ 125 (143)
T cd07243 64 -------P-----DGKLHHFSFFLESWEDVLKAGDIISMNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETFAG 125 (143)
T ss_pred -------C-----CCCceEEEEEcCCHHHHHHHHHHHHHcCCceEECCcCCCCCCceEEEEECCCCCEEEEecC
Confidence 0 1267899999999887 56899999999876553322 24579999999999999864
No 16
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=99.80 E-value=8e-19 Score=123.86 Aligned_cols=124 Identities=25% Similarity=0.388 Sum_probs=85.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|++|.|+|++++++||+++|||++..........+..+++..+ ...++|.........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~-------------------~~~i~l~~~~~~~~~ 61 (128)
T TIGR03081 1 RIDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALG-------------------NTKVELLEPLGEDSP 61 (128)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecC-------------------CEEEEEEecCCCCCh
Confidence 5789999999999999999999999987654333333445555432 346777543222110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeec-CCCCccc-eEEEE--ECCCCcEEEEee
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKK-PDGGKLK-GVAFI--KDPDDYWIEIFD 174 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~-~~~~~~~-~~~~~--~DPdG~~iEl~~ 174 (185)
...+... ...++.|+||.|+|+++++++|+++|+++..+ |..+.++ +.+|+ +||||++||++|
T Consensus 62 --~~~~~~~--~~~g~~~i~~~v~di~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~~~dp~G~~~E~~~ 128 (128)
T TIGR03081 62 --IAKFLEK--NGGGIHHIAIEVDDIEAALETLKEKGVRLIDEEPRIGAGGKPVAFLHPKSTGGVLIELEE 128 (128)
T ss_pred --HHHHHhc--CCCceEEEEEEcCCHHHHHHHHHHCCCcccCCCCccCCCCCEEEEecccccCcEEEEecC
Confidence 0001001 12367899999999999999999999999864 5554443 45566 799999999986
No 17
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.79 E-value=7.2e-18 Score=118.92 Aligned_cols=110 Identities=17% Similarity=0.336 Sum_probs=79.9
Q ss_pred ceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 029933 26 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 105 (185)
Q Consensus 26 ~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 105 (185)
.++++|++|.|+|+++|++||+++||+++.... ..+ .++..+. ...+.+... ..
T Consensus 2 ~~~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~------------------~~~l~~~~~--~~ 55 (123)
T cd08351 2 TVTLNHTIVPARDREASAEFYAEILGLPWAKPF----GPF--AVVKLDN------------------GVSLDFAQP--DG 55 (123)
T ss_pred cceEeEEEEEcCCHHHHHHHHHHhcCCEeeecc----CCE--EEEEcCC------------------CcEEEEecC--CC
Confidence 468999999999999999999999999887632 112 1122111 234444321 00
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCEEeecCCC--------CccceEEEEECCCCcEEEEeec
Q 029933 106 SDPDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG--------GKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~hi~~~v~--dv~~~~~~l~~~G~~~~~~~~~--------~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.....|++|.++ |+++++++|+++|+++..+|.. ..+++.+||+|||||.|||+++
T Consensus 56 --------------~~~~~h~a~~v~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 121 (123)
T cd08351 56 --------------EIPPQHYAFLVSEEEFDRIFARIRERGIDYWADPQRTEPGQINTNDGGRGVYFLDPDGHLLEIITR 121 (123)
T ss_pred --------------CCCcceEEEEeCHHHHHHHHHHHHHcCCceecCCcccccccccCCCCeeEEEEECCCCCEEEEEec
Confidence 013479999887 6999999999999998776543 2345789999999999999987
No 18
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.79 E-value=1.9e-18 Score=126.73 Aligned_cols=120 Identities=17% Similarity=0.220 Sum_probs=81.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecC-CCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
+|+|++|.|+|++++++||+++||+++......+ .......|+..++.... ..+..+.+..
T Consensus 1 ri~Hv~l~V~Dle~a~~FY~~~LG~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------~~~~~~~l~~------ 62 (153)
T cd07257 1 RLGHVVLEVPDFAASFDWYTETFGLKPSDVIYLPGPGNPVAAFLRLDRGEEY------------VDHHTLALAQ------ 62 (153)
T ss_pred CccEEEEecCCHHHHHHHHHHhcCCeEEeeEecCCCCCcEEEEEecCCCCCc------------ccchHHHHhc------
Confidence 5789999999999999999999999987654332 12234555543211000 0000111110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCEEeecCCCCcc--ceEEEEECCCCcEEEEeecC
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 176 (185)
....+++||||.|+|++++. ++|+++|+++...+..... ...+|++|||||.|||+...
T Consensus 63 -----------~~~~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~~g~~~~g~~~~~y~~DPdG~~iEl~~~~ 126 (153)
T cd07257 63 -----------GPESGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWGVGRHILGSQIFDYWFDPWGFIVEHYTDG 126 (153)
T ss_pred -----------CCCCceeEEEEEcCCHHHHHHHHHHHHHCCCcEeecCCccCCCCCEEEEEECCCCCEEEEEcCc
Confidence 00237899999999999986 9999999998866533222 23679999999999999754
No 19
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.79 E-value=1.1e-17 Score=115.92 Aligned_cols=119 Identities=19% Similarity=0.325 Sum_probs=83.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
|++|.|.|++++++||+++|||++..+....+ ....+.+..++. ....+++........ .
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~-~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~--~- 60 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGG-GFRWVTVAPPGS----------------PETSLVLAPPANPAA--M- 60 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCC-CcEEEEEeCCCC----------------CeeEEEEeCCCCccc--c-
Confidence 78999999999999999999999987743211 223333432210 012444432221111 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
......+..|++|.|+|+++++++++++|+++..++.....++.+|++|||||.|||+|
T Consensus 61 -----~~~~~~~~~~~~~~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~ 119 (119)
T cd07263 61 -----SGLQPGGTPGLVLATDDIDATYEELKARGVEFSEEPREMPYGTVAVFRDPDGNLFVLVQ 119 (119)
T ss_pred -----ccccCCCceEEEEEehHHHHHHHHHHhCCCEEeeccccCCCceEEEEECCCCCEEEEeC
Confidence 00122367799999999999999999999999988755555678999999999999975
No 20
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=99.78 E-value=1.2e-17 Score=115.82 Aligned_cols=113 Identities=19% Similarity=0.152 Sum_probs=80.9
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
+.|++|.|+|++++++||+++||+++..... ....+ .++..++ ...+.++......
T Consensus 1 ~~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~-~~~~~--~~~~~~~------------------~~~~~~~~~~~~~--- 56 (114)
T cd07247 1 PVWFELPTTDPERAKAFYGAVFGWTFEDMGD-GGGDY--AVFSTGG------------------GAVGGLMKAPEPA--- 56 (114)
T ss_pred CEEEEeeCCCHHHHHHHHHhccCceeeeccC-CCCce--EEEEeCC------------------ccEEEEecCCCCC---
Confidence 3699999999999999999999999876532 12222 2333211 1234443221110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCc-cceEEEEECCCCcEEEEee
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iEl~~ 174 (185)
.......|++|.|+|+++++++|+++|+++..+|.... .++.+|++|||||.|||+|
T Consensus 57 ---------~~~~~~~~~~f~v~di~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DPdG~~~~l~~ 114 (114)
T cd07247 57 ---------AGSPPGWLVYFAVDDVDAAAARVEAAGGKVLVPPTDIPGVGRFAVFADPEGAVFGLWQ 114 (114)
T ss_pred ---------CCCCCeEEEEEEeCCHHHHHHHHHHCCCEEEeCCcccCCcEEEEEEECCCCCEEEeEC
Confidence 01124579999999999999999999999998775443 4568999999999999975
No 21
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=99.78 E-value=1.4e-17 Score=117.00 Aligned_cols=113 Identities=22% Similarity=0.281 Sum_probs=79.3
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
++++|++|.|+|++++++||+++|||++..... +. . .++..... ..+..+.+. ...
T Consensus 3 ~~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~~--~~--~-~~~~~~~~---------------~~~~~~~l~--~~~-- 58 (122)
T cd07265 3 LRPGHVQLRVLDLEEAIKHYREVLGLDEVGRDD--QG--R-VYLKAWDE---------------FDHHSIVLR--EAD-- 58 (122)
T ss_pred ceEeEEEEEeCCHHHHHHHHHhccCCEeeeecC--Cc--e-EEEEccCC---------------CcccEEEec--cCC--
Confidence 489999999999999999999999999876521 11 1 22221110 002233331 110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCC--CccceEEEEECCCCcEEEEeecC
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG--GKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~--~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
..++.|++|.|+ |+++++++|+++|+++...|.. ...+..+||+|||||.|||++..
T Consensus 59 -------------~~~~~hiaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 120 (122)
T cd07265 59 -------------TAGLDFMGFKVLDDADLEKLEARLQAYGVAVERIPAGELPGVGRRVRFQLPSGHTMELYADK 120 (122)
T ss_pred -------------CCCeeEEEEEeCCHHHHHHHHHHHHHCCCcEEEcccCCCCCCceEEEEECCCCCEEEEEEec
Confidence 115689999997 7999999999999998765532 22346799999999999998754
No 22
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=99.78 E-value=1.3e-17 Score=122.43 Aligned_cols=120 Identities=20% Similarity=0.286 Sum_probs=83.3
Q ss_pred CCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecC---CCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEee
Q 029933 24 TNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP---EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 100 (185)
Q Consensus 24 ~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 100 (185)
+..++|+|++|.|+|++++++||+++||+++....... +......++..+.. +..+.+..
T Consensus 5 ~~~~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~~~~ 67 (154)
T cd07237 5 TGDQGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGR-----------------HHSLALAE 67 (154)
T ss_pred cCCCccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCC-----------------CCCEEEEc
Confidence 44568999999999999999999999999987643221 11223344433211 23344421
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCEEeecCCCC--ccceEEEEECCCCcEEEEeec
Q 029933 101 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~---~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.. ...++.||+|.|+|++ +++++|+++|+++...+... ...+.+|++||+||.|||+..
T Consensus 68 ~~----------------~~~g~~Hiaf~V~d~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~~~y~~DPdG~~iEl~~~ 131 (154)
T cd07237 68 GP----------------GPKRIHHLMLEVTSLDDVGRAYDRVRARGIPIAMTLGRHTNDRMLSFYVRTPSGFAIEYGWG 131 (154)
T ss_pred CC----------------CCceeEEEEEEcCCHHHHHHHHHHHHHcCCceeccCCccCCCCcEEEEEECCCCcEEEeccC
Confidence 10 1127799999998754 68999999999998766432 234579999999999999865
Q ss_pred C
Q 029933 176 K 176 (185)
Q Consensus 176 ~ 176 (185)
.
T Consensus 132 ~ 132 (154)
T cd07237 132 G 132 (154)
T ss_pred c
Confidence 3
No 23
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=99.77 E-value=6.5e-18 Score=115.86 Aligned_cols=114 Identities=25% Similarity=0.332 Sum_probs=81.4
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|+|++|.|+|++++++||+++||+++..+...+. ...++..++ ...+++.........
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~---~~~~~~~~~------------------~~~i~l~~~~~~~~~- 58 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF---PGAWLYAGD------------------GPQLHLIEEDPPDAL- 58 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC---CceEEEeCC------------------CcEEEEEecCCCccc-
Confidence 5799999999999999999999998876532221 122333221 225666544222110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEE
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 172 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl 172 (185)
.....+..|++|.|+|+++++++++++|+++...+......+.+|+.||+||.|||
T Consensus 59 --------~~~~~~~~~~~~~v~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~iE~ 114 (114)
T cd07245 59 --------PEGPGRDDHIAFRVDDLDAFRARLKAAGVPYTESDVPGDGVRQLFVRDPDGNRIEL 114 (114)
T ss_pred --------cCCCcccceEEEEeCCHHHHHHHHHHcCCCcccccCCCCCccEEEEECCCCCEEeC
Confidence 01122568999999999999999999999998877543445679999999999996
No 24
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=1.3e-17 Score=116.91 Aligned_cols=117 Identities=17% Similarity=0.218 Sum_probs=77.3
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
+++.|+.|.|+|++++++||+++|||++.... . .+ ..+ .. ...+.+...+....
T Consensus 1 ~~~~~~~l~v~D~~~a~~FY~~~lG~~~~~~~--~--~~-~~~-~~--------------------~~~l~~~~~~~~~~ 54 (120)
T cd09011 1 MKFKNPLLVVKDIEKSKKFYEKVLGLKVVMDF--G--EN-VTF-EG--------------------GFALQEGYSWLEGI 54 (120)
T ss_pred CEEEEEEEEECCHHHHHHHHHHhcCCEEeecc--C--ce-EEE-ec--------------------cceeccchhhhccC
Confidence 37889999999999999999999999986532 1 11 111 11 11111110000000
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCC-EEeecCCCCcc-ceEEEEECCCCcEEEEeec
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGV-EFAKKPDGGKL-KGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~-~~~~~~~~~~~-~~~~~~~DPdG~~iEl~~~ 175 (185)
... +.. ...+..||+|.|+|+++++++|+++|+ ++..+|....+ .+.+||+|||||+|||.+.
T Consensus 55 ~~~--~~~----~~~~~~~l~~~v~dvd~~~~~l~~~g~~~~~~~~~~~~~g~r~~~~~DPdGn~iei~~~ 119 (120)
T cd09011 55 SKA--DII----EKSNNFELYFEEEDFDAFLDKLKRYDNIEYVHPIKEHPWGQRVVRFYDPDKHIIEVGES 119 (120)
T ss_pred Ccc--ccc----ccCCceEEEEEehhhHHHHHHHHhcCCcEEecCcccCCCccEEEEEECCCCCEEEEecc
Confidence 000 011 112447999999999999999999985 78777765443 4689999999999999874
No 25
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.77 E-value=1.9e-17 Score=121.97 Aligned_cols=118 Identities=16% Similarity=0.217 Sum_probs=83.2
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
++|++|.|+|++++++||+++|||++..+.. . ...+...+.. .+..+++........
T Consensus 2 l~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~--~~~~~~~~~~----------------~~~~l~l~~~~~~~~-- 58 (157)
T cd08347 2 LHGVTLTVRDPEATAAFLTDVLGFREVGEEG---D--RVRLEEGGGG----------------PGAVVDVLEEPDQPR-- 58 (157)
T ss_pred cccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---C--EEEEEecCCC----------------CCCEEEEEeCCCCCC--
Confidence 6899999999999999999999999887632 1 1222222100 145677765321110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
...+..++.||+|.|+| +++++++|+++|+++.. +.+....+.+||+|||||+|||++...
T Consensus 59 -------~~~~~~~l~Hiaf~v~d~~dvd~~~~~L~~~Gv~~~~-~~~~~~~~s~yf~DPdG~~iEl~~~~~ 122 (157)
T cd08347 59 -------GRPGAGTVHHVAFRVPDDEELEAWKERLEALGLPVSG-IVDRFYFKSLYFREPGGILFEIATDGP 122 (157)
T ss_pred -------CcccCCceEEEEEECCCHHHHHHHHHHHHHCCCCccc-ccccccEEEEEEECCCCcEEEEEECCC
Confidence 01122367899999998 99999999999998643 333334467999999999999998753
No 26
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.77 E-value=3.8e-17 Score=114.97 Aligned_cols=118 Identities=23% Similarity=0.367 Sum_probs=83.1
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
++++|++|.|+|++++++||+++|||++.... + . .+++..++. ...+.+........
T Consensus 1 ~~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~---~-~--~~~l~~~~~-----------------~~~l~l~~~~~~~~ 57 (125)
T cd07255 1 TRIGAVTLRVADLERSLAFYQDVLGLEVLERT---D-S--TAVLGTGGK-----------------RPLLVLEEDPDAPP 57 (125)
T ss_pred CEEEEEEEEECCHHHHHHHHHhccCcEEEEcC---C-C--EEEEecCCC-----------------eEEEEEEeCCCCCc
Confidence 47999999999999999999999999998762 1 1 234443210 23455543221110
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
.. ....+..|++|.|+ ++++++++|+++|+++.... .....+.+|++|||||.|||....+
T Consensus 58 -----~~----~~~~~~~hi~f~v~~~~~v~~~~~~l~~~g~~~~~~~-~~~~~~~~~~~DPdG~~iEi~~~~~ 121 (125)
T cd07255 58 -----AP----PGATGLYHFAILLPSRADLAAALRRLIELGIPLVGAS-DHLVSEALYLSDPEGNGIEIYADRP 121 (125)
T ss_pred -----cc----CCCCcEEEEEEECCCHHHHHHHHHHHHHcCCceeccc-cccceeEEEEECCCCCEEEEEEecC
Confidence 01 11236789999997 49999999999999876543 3333467999999999999987665
No 27
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=99.76 E-value=2.3e-17 Score=115.72 Aligned_cols=122 Identities=20% Similarity=0.279 Sum_probs=82.4
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCC-ceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
.|+|++|.|+|++++++||+++|||++.......+. .....++..... .+...++++.......
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~l~~~~~~~~ 65 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLG---------------SPGTLLTFFEWPDAGP 65 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCC---------------CCCCEEEEEecCCCCC
Confidence 368999999999999999999999998876432221 112223322100 0134677764422211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEe
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~ 173 (185)
. ......+..|++|.|+ ++++++++++++|+++...+.. .+++.+||+|||||+|||+
T Consensus 66 ~--------~~~~~~~~~hi~f~v~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~DP~G~~iE~~ 126 (126)
T cd08346 66 K--------GRRGPGQIHHIAFSVPSEASLDAWRERLRAAGVPVSGVVDH-FGERSIYFEDPDGLRLELT 126 (126)
T ss_pred C--------CCCCCCcEEEEEEEcCCHHHHHHHHHHHHHcCCcccceEee-cceEEEEEECCCCCEEEeC
Confidence 0 0112236789999998 5799999999999998764433 3456899999999999985
No 28
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=99.76 E-value=3.9e-17 Score=120.76 Aligned_cols=116 Identities=18% Similarity=0.285 Sum_probs=77.2
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
++|+|++|.|+|++++++||+++|||++..............++..... ...+.+... .
T Consensus 2 ~~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~~~~~~~~~~~~~~l~~~~~-----------------~~~i~l~~~--~-- 60 (161)
T cd07256 2 QRLDHFNLRVPDVDAGLAYYRDELGFRVSEYTEDDDGTTWAAWLHRKGG-----------------VHDTALTGG--N-- 60 (161)
T ss_pred ceEEEEEEecCCHHHHHHHHHhccCCEEEEEeccCCCcEEEEEEecCCC-----------------cceEEEecC--C--
Confidence 4899999999999999999999999998754332222222334432110 223333211 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEE--eecCCC-C-ccceEEEEECCCCcEEEEeecC
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEF--AKKPDG-G-KLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~--~~~~~~-~-~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
..++.|++|.|+| +++++++|+++|+.. ...|.. + ...+.+||+|||||.|||++..
T Consensus 61 -------------~~~~~Hiaf~v~~~~~v~~~~~~L~~~G~~~~~~~~p~~~g~~~~~~~y~~DPdG~~iEl~~~~ 124 (161)
T cd07256 61 -------------GPRLHHVAFWVPEPHNIIRTCDLLAAAGYSDRIERGPGRHGISNAFFLYLRDPDGHRIEIYTGD 124 (161)
T ss_pred -------------CCceeEEEEEcCCHHHHHHHHHHHHHcCCCcccccCCCccCCCCceEEEEECCCCCeEEEeecC
Confidence 1167899999986 777889999999863 223322 1 1234689999999999998643
No 29
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.76 E-value=4.3e-17 Score=114.03 Aligned_cols=118 Identities=22% Similarity=0.325 Sum_probs=81.9
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|+.|.|+|++++++||+++||++........ .+ .++..+ ...+++........
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~--~~--~~~~~~-------------------~~~~~l~~~~~~~~- 58 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEV--GR--KALRFG-------------------SQKINLHPVGGEFE- 58 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccC--Cc--eEEEeC-------------------CEEEEEecCCCccC-
Confidence 6899999999999999999999999988763211 11 222221 23455543222110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC-HHHHHHHHHhcCCEEeecCCCC----ccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD-VYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d-v~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+. .. ....+..|++|.+++ +++++++|+++|+++...+... ..++.+||+|||||+||+.++
T Consensus 59 ~~--~~----~~~~~~~hi~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 125 (125)
T cd07253 59 PA--AG----SPGPGSDDLCLITEPPIDELVAHLEAHGVPIEEGPVPRTGARGPITSVYFRDPDGNLIELSNY 125 (125)
T ss_pred cC--cc----CCCCCCceEEEEecccHHHHHHHHHHCCceeecCcccccCCCCCccEEEEECCCCCEEEeeeC
Confidence 00 01 112367899999975 9999999999999988766431 224579999999999999874
No 30
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.76 E-value=1.3e-16 Score=111.94 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=81.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
...|.|+|++++++||+++||+++.......+..+....+..+ ...+.+........ .
T Consensus 2 ~p~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~~-~-- 59 (122)
T cd08355 2 WPTLRYRDAAAAIDWLTDAFGFEERLVVPDDDGGVAHAELRFG-------------------DGGVMVGSVRDDYR-A-- 59 (122)
T ss_pred eEEEEECCHHHHHHHHHHhcCCEEEEEEeCCCCcEEEEEEEEC-------------------CEEEEEecCCCccc-c--
Confidence 3578899999999999999999998765333333333334332 12344432221110 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCcc-ceEEEEECCCCcEEEEeec
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iEl~~~ 175 (185)
.. ......+..||+|.|+|+++++++++++|+++..+|....+ .+.++++|||||+|+|.++
T Consensus 60 --~~-~~~~~~~~~~~~~~v~d~d~~~~~l~~~G~~v~~~~~~~~~g~~~~~~~DPdG~~~~l~~~ 122 (122)
T cd08355 60 --SS-ARAGGAGTQGVYVVVDDVDAHYERARAAGAEILREPTDTPYGSREFTARDPEGNLWTFGTY 122 (122)
T ss_pred --cc-cccCCCceEEEEEEECCHHHHHHHHHHCCCEEeeCccccCCCcEEEEEECCCCCEEEEecC
Confidence 00 00111245799999999999999999999999988765443 3678999999999999753
No 31
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.76 E-value=3.9e-17 Score=116.65 Aligned_cols=117 Identities=16% Similarity=0.180 Sum_probs=78.6
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|++|.|+|++++++||+++||+++..+.......... ..|...+...+++... ..
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~------------------~~~~~~~~~~i~l~~~--~~-- 61 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSK------------------EKFFLIGGLWIAIMEG--DS-- 61 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccc------------------eeEEEcCCeEEEEecC--CC--
Confidence 6899999999999999999999999876552211100000 0011111234555321 10
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCEEeecCC-CCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~--dv~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
. ...++.||+|.|+ ++++++++|+++|+++..... ....++.+||+|||||.|||....
T Consensus 62 -----~-----~~~~~~Hiaf~v~~~~ld~~~~~l~~~gv~~~~~~~~~~~~g~~~yf~DPdG~~iEl~~~~ 123 (131)
T cd08364 62 -----L-----QERTYNHIAFKISDSDVDEYTERIKALGVEMKPPRPRVQGEGRSIYFYDFDNHLFELHTGT 123 (131)
T ss_pred -----C-----CCCCceEEEEEcCHHHHHHHHHHHHHCCCEEecCCccccCCceEEEEECCCCCEEEEecCC
Confidence 0 0125689999998 799999999999998764322 222356899999999999998654
No 32
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=99.76 E-value=4.6e-17 Score=114.33 Aligned_cols=111 Identities=18% Similarity=0.235 Sum_probs=78.1
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|+.|.|+|++++++||+++|||++..+.. . ..++...+.. ....+.+... .
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~~~--~----~~~l~~~~~~---------------~~~~~~l~~~--~--- 59 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGREG--Q----SVYLRAWGDY---------------EHHSLKLTES--P--- 59 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEeecC--C----eEEEEeccCC---------------CccEEEEeeC--C---
Confidence 79999999999999999999999999877522 1 2233221100 0233444211 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
..++.|++|.++ ++++++++++++|+++...+.....+..+||+|||||.||++...
T Consensus 60 ------------~~~~~h~af~v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 119 (121)
T cd09013 60 ------------EAGLGHIAWRASSPEALERRVAALEASGLGIGWIEGDPGHGKAYRFRSPDGHPMELYWEV 119 (121)
T ss_pred ------------CCceEEEEEEcCCHHHHHHHHHHHHHcCCccccccCCCCCcceEEEECCCCCEEEEEEec
Confidence 126789999997 588999999999998754332223455799999999999998644
No 33
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.75 E-value=8.2e-17 Score=113.15 Aligned_cols=122 Identities=21% Similarity=0.303 Sum_probs=77.5
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC-
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD- 107 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~- 107 (185)
+.|+.|.|+|++++++||+++|||++..... ...+. .+..+ ...+.+.........
T Consensus 1 ~~~~~l~v~D~~~s~~FY~~~lG~~~~~~~~--~~~~~--~~~~~-------------------~~~~~~~~~~~~~~~~ 57 (125)
T cd07264 1 FGYTIIYVEDVEKTLEFYERAFGFERRFLHE--SGDYG--ELETG-------------------ETTLAFASHDLAESNL 57 (125)
T ss_pred CceEEEEEcCHHHHHHHHHHhhCCeEEeecC--CCcEE--EecCC-------------------cEEEEEEccccccccc
Confidence 3589999999999999999999998865422 22221 11111 122222211100000
Q ss_pred -CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCcc-ceEEEEECCCCcEEEEeec
Q 029933 108 -PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 -~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iEl~~~ 175 (185)
....+ ......+ +..|++|.|+|+++++++++++|+++..++....+ .+.++++|||||.|||+++
T Consensus 58 ~~~~~~-~~~~~~~-~~~~~~~~v~di~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~~~~~~~ 125 (125)
T cd07264 58 KGGFVK-ADPAQPP-AGFEIAFVTDDVAAAFARAVEAGAVLVSEPKEKPWGQTVAYVRDINGFLIELCSP 125 (125)
T ss_pred ccCccC-CccccCC-CcEEEEEEcCCHHHHHHHHHHcCCEeccCCccCCCCcEEEEEECCCCCEEEEecC
Confidence 00000 0000111 33599999999999999999999999887754433 3578999999999999874
No 34
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=99.75 E-value=5.9e-17 Score=116.79 Aligned_cols=115 Identities=18% Similarity=0.290 Sum_probs=81.7
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|+.|.|+|++++++||+++||+++..+.. ...++..+ ...+.+......
T Consensus 4 ~i~hi~L~v~Dl~~s~~FY~~~lG~~~~~~~~------~~~~~~~~-------------------g~~l~l~~~~~~--- 55 (139)
T PRK04101 4 GINHICFSVSNLEKSIEFYEKVLGAKLLVKGR------KTAYFDLN-------------------GLWIALNEEKDI--- 55 (139)
T ss_pred cEEEEEEEecCHHHHHHHHHhccCCEEEeecC------eeEEEecC-------------------CeEEEeeccCCC---
Confidence 68999999999999999999999999876421 12333322 233444321110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCEEeecCCC-CccceEEEEECCCCcEEEEeecCc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~--dv~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
... ....++.|++|.++ |+++++++|+++|+++...+.. ...++.+||+|||||+|||.+..-
T Consensus 56 ------~~~-~~~~~~~hiaf~v~~~dv~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~DPdGn~iEl~~~~~ 121 (139)
T PRK04101 56 ------PRN-EIHQSYTHIAFSIEEEDFDHWYQRLKENDVNILPGRERDERDKKSIYFTDPDGHKFEFHTGTL 121 (139)
T ss_pred ------CCc-cCCCCeeEEEEEecHHHHHHHHHHHHHCCceEcCCccccCCCceEEEEECCCCCEEEEEeCCH
Confidence 000 11236689999998 9999999999999998765533 334578999999999999987543
No 35
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.75 E-value=7.1e-17 Score=115.65 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|++|.|+|+++|++||+++||+++..... . ...|+..+... .+..+.+.....
T Consensus 3 ~l~hi~l~v~dl~~s~~FY~~vlGl~~~~~~~--~---~~~~~~~~~~~---------------~~~~i~l~~~~~---- 58 (134)
T cd08360 3 RLGHVVLFVPDVEAAEAFYRDRLGFRVSDRFK--G---RGAFLRAAGGG---------------DHHNLFLIKTPA---- 58 (134)
T ss_pred eeeEEEEEcCCHHHHHHHHHHhcCCEEEEEec--C---cEEEEECCCCC---------------CCcEEEEecCCC----
Confidence 79999999999999999999999999876532 1 13344332100 034555532110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCEEeecCCCCcc--ceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~---~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~~ 176 (185)
...+++||+|.|+|++++. ++|+++|+++...+..... ...+||+||+||.|||+...
T Consensus 59 -----------~~~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~y~~DP~G~~iEl~~~~ 121 (134)
T cd08360 59 -----------PMAGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGWGPGRHRIGSNYFWYFRDPWGGEVEYGADM 121 (134)
T ss_pred -----------CCCcceEEEEEeCCHHHHHHHHHHHHHcCCccccCCCCcCCCccEEEEEECCCCCEEEEEccc
Confidence 0137899999999988776 5999999998765533222 34689999999999998643
No 36
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=99.75 E-value=3.6e-17 Score=116.90 Aligned_cols=114 Identities=17% Similarity=0.258 Sum_probs=80.4
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|+|++|.|+|++++++||+++|||++..... . ..++..+ +..+.+.......
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~--~----~~~~~~~-------------------~~~l~l~~~~~~~--- 52 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE--K----TAYFTIG-------------------GTWLALNEEPDIP--- 52 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC--c----cceEeeC-------------------ceEEEEEccCCCC---
Confidence 5899999999999999999999998865411 1 1223221 2344443321110
Q ss_pred CCCCCCCCCCCCCCceEEEEEeCC--HHHHHHHHHhcCCEEeecCC-CCccceEEEEECCCCcEEEEeecCc
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVDD--VYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~d--v~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
. . ....++.||+|.|++ +++++++|+++|+++...+. ....++.+||+|||||.|||++...
T Consensus 53 ----~--~-~~~~~~~hiaf~v~~~dld~~~~~l~~~G~~~~~~~~~~~~~~~~~~f~DPdG~~iEl~~~~~ 117 (131)
T cd08363 53 ----R--N-EIRQSYTHIAFTIEDSEFDAFYTRLKEAGVNILPGRKRDVRDRKSIYFTDPDGHKLEVHTGTL 117 (131)
T ss_pred ----c--C-CcCccceEEEEEecHHHHHHHHHHHHHcCCcccCCCccccCcceEEEEECCCCCEEEEecCcH
Confidence 0 0 112367899999984 99999999999999875543 2234568999999999999998665
No 37
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.75 E-value=1.1e-16 Score=113.12 Aligned_cols=118 Identities=19% Similarity=0.287 Sum_probs=83.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhc---CCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 104 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 104 (185)
+|+|++|.|+|++++++||+++| ||++..... . . ..|.... ++..+.+......
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~--~-~--~~~~~~~------------------~~~~i~l~~~~~~ 57 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWE--D-G--RSWRAGD------------------GGTYLVLQQADGE 57 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeec--c-C--ceEEecC------------------CceEEEEEecccC
Confidence 47899999999999999999999 999887632 1 1 1122111 1456777644322
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCC----CccceEEEEECCCCcEEEEeec
Q 029933 105 ESDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.. .. . .....++.|++|.|+ |+++++++|+++|+.+...+.. ...++.+|++|||||+|||+.+
T Consensus 58 ~~-~~---~---~~~~~g~~hia~~v~~~~d~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~DpdG~~ie~~~~ 128 (128)
T cd07242 58 SA-GR---H---DRRNPGLHHLAFRAPSREAVDELYARLAKRGAEILYAPREPYAGGPGYYALFFEDPDGIRLELVAP 128 (128)
T ss_pred CC-cc---c---ccCCcCeeEEEEEcCCHHHHHHHHHHHHHcCCeEecCCcccccCCCcEEEEEEECCCCcEEEEEeC
Confidence 11 00 0 012236789999997 4899999999999999887653 2344689999999999999864
No 38
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.75 E-value=2.9e-17 Score=115.59 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=84.2
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecC-CCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP-EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++|++|.|+|++++++||+++|||++....... ...+..+++..+ ...+++.........
T Consensus 1 ~~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~l~l~~~~~~~~~ 61 (128)
T cd07249 1 IDHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLGLG-------------------NVQIELIEPLDDDSP 61 (128)
T ss_pred CcEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEEcC-------------------CEEEEEEEECCCCCc
Confidence 479999999999999999999999998764432 223344555432 456777654322111
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCC-CCccceEEEEECCC---CcEEEEee
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPD---DYWIEIFD 174 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPd---G~~iEl~~ 174 (185)
. ..+ . .....+..|++|.|+|+++++++++++|+++..++. ....++.+++.||+ |++|||+|
T Consensus 62 ~--~~~-~-~~~~~g~~h~~f~v~d~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~d~~~~~g~~iE~~~ 128 (128)
T cd07249 62 I--AKF-L-EKRGEGLHHIAFEVDDIDAALARLKAQGVRLLQEGPRIGAGGKRVAFLHPKDTGGVLIELVE 128 (128)
T ss_pred H--HHH-H-hcCCCceEEEEEEeCCHHHHHHHHHHCCCeeeccCCCccCCCCEEEEEecCCCceEEEEecC
Confidence 0 000 0 011247789999999999999999999999988775 33334445545555 99999975
No 39
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=99.75 E-value=6.7e-17 Score=113.53 Aligned_cols=110 Identities=19% Similarity=0.234 Sum_probs=78.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|++|.|+|+++|++||+++|||++..+.. . . ..++..++. +..+.+... ..
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~~~--~-~--~~~~~~~~~-----------------~~~~~l~~~--~~-- 55 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDRPE--D-G--ALYLRMDDR-----------------AWRIAVHPG--EA-- 55 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccCCC--C-C--eEEEEccCC-----------------ceEEEEEeC--CC--
Confidence 67899999999999999999999998865421 1 1 223332211 234444211 10
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCC----CCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~----~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.++.|++|.+++ +++++++|+++|+++...+. ....++.+||+|||||.||++...
T Consensus 56 -------------~~~~~~~f~v~~~~dl~~~~~~l~~~Gv~~~~~~~~~~~~~~~~~~~~~~DPdG~~iE~~~~~ 118 (120)
T cd07252 56 -------------DDLAYAGWEVADEAALDALAARLRAAGVAVEEGSAELAAERGVEGLIRFADPDGNRHELFWGP 118 (120)
T ss_pred -------------CceeEEEEEECCHHHHHHHHHHHHHcCCeEEEcCHHHHhhCCCcEEEEEECCCCCEEEEEecc
Confidence 155799999974 89999999999999986542 122335799999999999998754
No 40
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=99.75 E-value=1.1e-16 Score=118.92 Aligned_cols=117 Identities=16% Similarity=0.276 Sum_probs=79.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+|+|++|.|+|++++++||+++|||++..............|+..... ...+.+.. ...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~l~~--~~~-- 64 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQIRLDNGKEAGAWMSVSNK-----------------VHDVAYTR--DPA-- 64 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEEEecCCCceEEEEEeCCCC-----------------ceeEEEec--CCC--
Confidence 799999999999999999999999998765432222222334432110 12233321 110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCcc--ceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl~~~ 175 (185)
....+++||||.|+| +++++++|+++|+++...|..... ...+|++|||||+|||++.
T Consensus 65 ----------~~~~~~~hiaf~v~~~~~l~~~~~~l~~~Gv~i~~~p~~~~~~~~~~~y~~DPdG~~iEl~~~ 127 (166)
T cd09014 65 ----------GARGRLHHLAYALDTREDVLRAADIFLENGIFIEAGPGKHGIQQTFFLYVYEPGGNRVELFGG 127 (166)
T ss_pred ----------CCCCCceEEEEECCCHHHHHHHHHHHHHcCCccccCCcccCCCCceEEEEECCCCCEEEEEEc
Confidence 011257899999986 557889999999998766644322 2368999999999999987
No 41
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=99.75 E-value=1.3e-16 Score=113.65 Aligned_cols=114 Identities=20% Similarity=0.333 Sum_probs=82.1
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 109 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 109 (185)
+|++|.|+|++++++||+++||+++......+ .....+|+..+.. ...+.+.....
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~l~~~~~~~------ 56 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDP-GVDAAAFLRCDED-----------------HHDLALFPGPE------ 56 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccC-CceeEEEEEcCCC-----------------cceEEEEcCCC------
Confidence 49999999999999999999999987664322 2234455554221 23455432100
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCEEeecCCCCc--cceEEEEECCCCcEEEEeecCc
Q 029933 110 FKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 110 ~~~~~~~~~~~~g~~hi~~~v~dv~---~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
..++.|++|.|+|++ +++++++++|+++..++.... ..+.+||+|||||+|||++...
T Consensus 57 ----------~~~~~hl~~~v~d~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~DPdG~~iei~~~~~ 119 (131)
T cd08343 57 ----------RPGLHHVAFEVESLDDILRAADRLAANGIQIEFGPGRHGPGNNLFLYFRDPDGNRVELSAEMY 119 (131)
T ss_pred ----------CCCeeEEEEEcCCHHHHHHHHHHHHHcCCeeEECCCccCCCCcEEEEEECCCCCEEEEEcCCc
Confidence 126789999999864 688999999999987764322 2357899999999999998654
No 42
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.74 E-value=1.3e-16 Score=111.64 Aligned_cols=120 Identities=18% Similarity=0.266 Sum_probs=80.9
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
+.+++|.|.|++++++||+++|||++..+. +..+ .++..++ ...+.++.........
T Consensus 1 ~~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~---~~~~--~~l~~~~------------------~~~~~l~~~~~~~~~~ 57 (122)
T cd08354 1 ILETALYVDDLEAAEAFYEDVLGLELMLKE---DRRL--AFFWVGG------------------RGMLLLFDPGATSTPG 57 (122)
T ss_pred CeEEEEEeCCHHHHHHHHHhccCCEEeecC---CCce--EEEEcCC------------------CcEEEEEecCCccccc
Confidence 468999999999999999999999988741 2222 3333322 2234443321111000
Q ss_pred CCCCCCCCCCCCCCceEEEEEe--CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 109 DFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v--~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.. .. .....+..|++|.+ +|++++++++.++|+++...+.....++.+|++|||||.|||+++
T Consensus 58 ~~--~~--~~~~~~~~~~~~~v~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 122 (122)
T cd08354 58 GE--IP--PHGGSGPGHFAFAIPAEELAEWEAHLEAKGVAIESEVQWPRGGRSLYFRDPDGNLLELATP 122 (122)
T ss_pred CC--CC--CCCCCCccEEEEEcCHHHHHHHHHHHHhcCCceeccccCCCCeeEEEEECCCCCEEEEecC
Confidence 00 00 01123668999999 489999999999999987766534455689999999999999864
No 43
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=99.74 E-value=1.7e-16 Score=113.17 Aligned_cols=120 Identities=23% Similarity=0.372 Sum_probs=83.5
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+|+|+.|.|+|++++++||+++||+++...... .. ..++..+.. ....+.+........
T Consensus 1 ~i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~--~~--~~~~~~~~~----------------~~~~l~l~~~~~~~~- 59 (134)
T cd08348 1 RLSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL--GG--LVFLSRDPD----------------EHHQIALITGRPAAP- 59 (134)
T ss_pred CeeEEEEEecCHHHHHHHHHHhcCCEEEeeccC--Cc--EEEEEecCC----------------CceEEEEEecCCCCC-
Confidence 589999999999999999999999998765321 12 334433200 034566653322110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHH---HHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCcc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVY---KACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 178 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~---~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 178 (185)
.....++.|++|.|+|++ +++++|.++|+++...+..+ .++.+|++||+||.|||++....
T Consensus 60 ---------~~~~~~~~h~~f~v~~~~~v~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~DP~G~~ie~~~~~~~ 123 (134)
T cd08348 60 ---------PPGPAGLNHIAFEVDSLDDLRDLYERLRAAGITPVWPVDHG-NAWSIYFRDPDGNRLELFVDTPW 123 (134)
T ss_pred ---------CCCCCCceEEEEEeCCHHHHHHHHHHHHHCCCCccccCCCC-ceeEEEEECCCCCEEEEEEcCCC
Confidence 011236789999998755 58899999999887655333 34679999999999999987653
No 44
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=99.74 E-value=1e-16 Score=111.25 Aligned_cols=110 Identities=24% Similarity=0.366 Sum_probs=80.9
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
++++|+.|.|+|++++++||+++|||++..... . ..++..+.. .+..+.+... ..
T Consensus 1 ~~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~--~----~~~~~~~~~----------------~~~~~~~~~~--~~- 55 (117)
T cd07240 1 RRIAYAELEVPDLERALEFYTDVLGLTVLDRDA--G----SVYLRCSED----------------DHHSLVLTEG--DE- 55 (117)
T ss_pred CceeEEEEecCCHHHHHHHHHhccCcEEEeecC--C----eEEEecCCC----------------CcEEEEEEeC--CC-
Confidence 479999999999999999999999999887631 1 233333210 0233444221 10
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCC-CccceEEEEECCCCcEEEEeec
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~-~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.+..|++|.|+ ++++++++++++|+++...+.. ...++.+|+.||+||.||++..
T Consensus 56 --------------~~~~h~~~~v~~~~~v~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~ 114 (117)
T cd07240 56 --------------PGVDALGFEVASEEDLEALAAHLEAAGVAPEEASDPEPGVGRGLRFQDPDGHLLELFVE 114 (117)
T ss_pred --------------CCceeEEEEcCCHHHHHHHHHHHHHcCCceEEcCccCCCCceEEEEECCCCCEEEEEEc
Confidence 15689999997 6899999999999999887642 3344689999999999999864
No 45
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=99.74 E-value=2e-16 Score=109.48 Aligned_cols=109 Identities=22% Similarity=0.348 Sum_probs=76.5
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
+..|.|+|++++++||+++|||++... . .+...+...+. .+..+.+......
T Consensus 3 ~~~l~v~Dl~~s~~FY~~~lG~~~~~~----~-~~~~~~~~~~~-----------------~~~~~~~~~~~~~------ 54 (112)
T cd07238 3 VPNLPVADPEAAAAFYADVLGLDVVMD----H-GWIATFASPQN-----------------MTVQVSLATEGGT------ 54 (112)
T ss_pred cceEecCCHHHHHHHHHHhcCceEEEc----C-CceEEEeecCC-----------------CCcEEEEecCCCC------
Confidence 457899999999999999999998643 1 12122222111 0234444321100
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccc-eEEEEECCCCcEEEEeecC
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~~~ 176 (185)
.....|++|.|+|+++++++|+++|+++..++....++ +.+|+.|||||.|||++++
T Consensus 55 ---------~~~~~~i~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~i~~~~~~ 112 (112)
T cd07238 55 ---------ATVVPDLSIEVDDVDAALARAVAAGFAIVYGPTDEPWGVRRFFVRDPFGKLVNILTHR 112 (112)
T ss_pred ---------CCCCCEEEEEeCCHHHHHHHHHhcCCeEecCCccCCCceEEEEEECCCCCEEEEEEcC
Confidence 01346999999999999999999999998877654433 6899999999999999763
No 46
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=2e-16 Score=110.40 Aligned_cols=115 Identities=17% Similarity=0.180 Sum_probs=77.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
++.|.|+|++++++||+++|||++.... ..+ ..+..++. ...+.+........ + .
T Consensus 4 ~~~l~v~D~~~s~~FY~~~lG~~~~~~~----~~~--~~~~~~~~-----------------~~~l~l~~~~~~~~-~-~ 58 (119)
T cd08359 4 YPVIVTDDLAETADFYVRHFGFTVVFDS----DWY--VSLRSPDG-----------------GVELAFMLPGHETV-P-A 58 (119)
T ss_pred eeEEEECCHHHHHHHHHHhhCcEEEecc----CcE--EEEecCCC-----------------ceEEEEccCCCCCC-c-c
Confidence 7889999999999999999999988651 112 22222110 12344432111100 0 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCcc-ceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iEl~~ 174 (185)
.. ..... ...|++|.|+|+++++++++++|+++..+|...+. .+.++++|||||+|||+|
T Consensus 59 --~~-~~~~~-~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 119 (119)
T cd08359 59 --AQ-YQFQG-QGLILNFEVDDVDAEYERLKAEGLPIVLPLRDEPWGQRHFIVRDPNGVLIDIVQ 119 (119)
T ss_pred --hh-cccCC-ceEEEEEEECCHHHHHHHHHhcCCCeeeccccCCCcceEEEEECCCCCEEEEEC
Confidence 00 00111 23499999999999999999999998877765443 468999999999999986
No 47
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=99.73 E-value=2.6e-16 Score=114.29 Aligned_cols=111 Identities=18% Similarity=0.343 Sum_probs=79.1
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|+.|.|+|++++++||+++|||++..... + ...|+..+.. +..+.+... .
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~--~---~~~~l~~~~~-----------------~~~~~l~~~--~--- 56 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSDWLG--D---QMAFLRCNSD-----------------HHSIAIARG--P--- 56 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEEeeC--C---eEEEEECCCC-----------------cceEEEccC--C---
Confidence 89999999999999999999999999865421 1 1234443221 233444211 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHH---HHHHhcCCEEeecCCC-Cc-cceEEEEECCCCcEEEEeecCc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKAC---ERFERLGVEFAKKPDG-GK-LKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~---~~l~~~G~~~~~~~~~-~~-~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
..++.|++|.|+|++++. ++|+++|+++...+.. +. ....+||+||+||.|||++...
T Consensus 57 ------------~~~~~hiaf~v~d~~~l~~~~~~l~~~Gi~~~~~~~~~~~~~~~~~yf~DPdG~~iE~~~~~~ 119 (144)
T cd07239 57 ------------HPSLNHVAFEMPSIDEVMRGIGRMIDKGIDILWGPGRHGPGDNTFAYFLDPGGFVIEYTSELE 119 (144)
T ss_pred ------------CCceEEEEEECCCHHHHHHHHHHHHHcCCceeeCCcccCCCCCEEEEEECCCCcEEEeccCce
Confidence 126689999999877775 8999999998866532 22 2346899999999999988543
No 48
>PRK06724 hypothetical protein; Provisional
Probab=99.73 E-value=2.2e-16 Score=112.52 Aligned_cols=110 Identities=16% Similarity=0.178 Sum_probs=74.0
Q ss_pred ceeEEEEEEEeCChHHHHHHHHHhc---CCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 029933 26 GYFMQQTMFRIKDPKVSLDFYSRVL---GMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 102 (185)
Q Consensus 26 ~~~i~h~~l~v~D~e~s~~FY~~~L---G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 102 (185)
..+++|+.|.|+|+++|++||+++| |++...... +.. + ...+.+...
T Consensus 5 ~~~i~Hv~l~V~Dle~s~~FY~~vlg~lg~~~~~~~~---------~~~-g-------------------~~~l~l~~~- 54 (128)
T PRK06724 5 RAGIHHIEFWVANLEESISFYDMLFSIIGWRKLNEVA---------YST-G-------------------ESEIYFKEV- 54 (128)
T ss_pred CcccCEEEEEeCCHHHHHHHHHHHHhhCCcEEeeeEe---------eeC-C-------------------CeeEEEecC-
Confidence 3479999999999999999999976 555432111 100 0 112222111
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCEEeecCCCC----ccceEEEEECCCCcEEEEeec
Q 029933 103 GTESDPDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~hi~~~v---~dv~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iEl~~~ 175 (185)
... .. ...+..|+||.| +++++++++|+++|+++...|... ++.+.+||+|||||.||++..
T Consensus 55 ~~~-------~~----~~~g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~~p~~~~~~~~g~~~~~f~DPdG~~iEl~~~ 123 (128)
T PRK06724 55 DEE-------IV----RTLGPRHICYQAINRKVVDEVAEFLSSTKIKIIRGPMEMNHYSEGYYTIDFYDPNGFIIEVAYT 123 (128)
T ss_pred Ccc-------cc----CCCCceeEEEecCChHHHHHHHHHHHHCCCEEecCCcccCCCCCCEEEEEEECCCCCEEEEEeC
Confidence 100 00 012568999998 689999999999999998766431 223578899999999999876
Q ss_pred C
Q 029933 176 K 176 (185)
Q Consensus 176 ~ 176 (185)
.
T Consensus 124 ~ 124 (128)
T PRK06724 124 P 124 (128)
T ss_pred C
Confidence 3
No 49
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=99.73 E-value=2.8e-16 Score=109.18 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=75.9
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|+.|.|+|+++|++||++ |||++..+.. + ..|+..++. ...+.+... +.
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~-lGl~~~~~~~--~----~~~~~~~~~-----------------~~~~~~~~~-~~--- 54 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTD-FGLEVAARTD--D----ELYYRGYGT-----------------DPFVYVARK-GE--- 54 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHH-cCCEEEEecC--C----eEEEecCCC-----------------ccEEEEccc-CC---
Confidence 789999999999999999999 9998876521 1 223332110 112222111 00
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
..++.|++|.|+|.+++.+.+++.|+.+...+.....++.+||+|||||.|||+.-
T Consensus 55 ------------~~~~~~~af~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 110 (113)
T cd07267 55 ------------KARFVGAAFEAASRADLEKAAALPGASVIDDLEAPGGGKRVTLTDPDGFPVELVYG 110 (113)
T ss_pred ------------cCcccEEEEEECCHHHHHHHHHcCCCeeecCCCCCCCceEEEEECCCCCEEEEEec
Confidence 12668999999999999999999999877554322334679999999999999764
No 50
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=99.73 E-value=6.7e-16 Score=107.82 Aligned_cols=117 Identities=16% Similarity=0.122 Sum_probs=81.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
-+.|.|+|++++.+||+++||+++..+.......+...++..+ ...+.+....... . .
T Consensus 4 ~~~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~l~~~-------------------~~~~~l~~~~~~~--~-~ 61 (122)
T cd07246 4 TPYLIVRDAAAAIDFYKKAFGAEELERMPDDDGRVMHAELRIG-------------------DSVLMLADEFPEH--G-S 61 (122)
T ss_pred eEEEEECCHHHHHHHHHHhhCCEEEEEEeCCCCCEEEEEEEEC-------------------CEEEEEecCCccc--C-C
Confidence 3568999999999999999999998775433333333334332 2345554221100 0 0
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC-ccceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG-KLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~DPdG~~iEl~~ 174 (185)
+. ....+..|++|.|+|++++++++.++|+++..++... +..+.++++|||||+|||.+
T Consensus 62 -~~----~~~~~~~~~~~~v~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~G~~~~l~~ 121 (122)
T cd07246 62 -PA----SWGGTPVSLHLYVEDVDATFARAVAAGATSVMPPADQFWGDRYGGVRDPFGHRWWIAT 121 (122)
T ss_pred -CC----CCCCceEEEEEEeCCHHHHHHHHHHCCCeEecCcccccccceEEEEECCCCCEEEEec
Confidence 00 1122557999999999999999999999998887543 33468999999999999986
No 51
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=99.73 E-value=1.6e-17 Score=116.50 Aligned_cols=121 Identities=28% Similarity=0.362 Sum_probs=79.5
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeec--CCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDF--PEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 105 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 105 (185)
+|+|++|.|+|++++++||+++|||++...... ........++..+ ...+++.......
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~l~~~~~~~ 61 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIG-------------------EGHIELFLNPSPP 61 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEEST-------------------SSCEEEEEEESSS
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeeccc-------------------ccceeeeeecccc
Confidence 589999999999999999999999999987651 2222333344432 3455555443332
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCcc--ceEEEEECCCCcEEEE
Q 029933 106 SDPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKL--KGVAFIKDPDDYWIEI 172 (185)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~--~~~~~~~DPdG~~iEl 172 (185)
..... ... . ..+..|+++.+. |+++++++|++.|+++...+..... ...+|++||+||.|||
T Consensus 62 ~~~~~--~~~--~-~~~~~~i~~~~~~~~dl~~~~~~l~~~g~~~~~~~~~~~~~~~~~~y~~Dp~G~~iE~ 128 (128)
T PF00903_consen 62 PRASG--HSF--P-EHGGHHIAFLAFDVDDLDAAYERLKAQGVEIVEEPDRYYFGSGYSFYFRDPDGNLIEF 128 (128)
T ss_dssp SSSEE--EHH--H-SHTSEEEEEEESSHHHHHHHHHHHHHTTGEEEEEEEEHSTTCEEEEEEEETTSEEEEE
T ss_pred ccccc--ccc--c-cccceeEEEEeccHHHHHHHHHHHhhcCccEEecCCCCCCCCEEEEEEECCCCCEEEC
Confidence 21100 000 0 002356666665 6888999999999999987743222 2345799999999997
No 52
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=1.6e-16 Score=112.09 Aligned_cols=120 Identities=18% Similarity=0.132 Sum_probs=77.6
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|+.+.|.|+|+++|++||++ |||++....... .......+ + ...+.+........
T Consensus 1 ~~~v~l~V~Dl~~s~~FY~~-lGf~~~~~~~~~--~~~~~~~~--~------------------~~~l~l~~~~~~~~-- 55 (124)
T cd09012 1 MIFINLPVKDLEKSTAFYTA-LGFEFNPQFSDE--KAACMVIS--D------------------NIFVMLLTEDFFQT-- 55 (124)
T ss_pred CEEEEeecCCHHHHHHHHHH-CCCEEccccCCC--CeEEEEEC--C------------------ceEEEEEcHHHHhh--
Confidence 46899999999999999977 899876532211 11111111 1 23444433211000
Q ss_pred CCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 109 DFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 109 ~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
+...........+..|++|.|+ ++++++++++++|+++..+|....+++.+||+|||||+|||+.
T Consensus 56 -~~~~~~~~~~~~~~~~l~f~v~~~~~vd~~~~~l~~~G~~i~~~p~~~~~~~~~~~~DPdG~~ie~~~ 123 (124)
T cd09012 56 -FTPKPIADTKKSTEVLISLSADSREEVDELVEKALAAGGKEFREPQDHGFMYGRSFADLDGHLWEVLW 123 (124)
T ss_pred -ccCCCcccCCCCCeEEEEEeCCCHHHHHHHHHHHHHCCCcccCCcccCCceEEEEEECCCCCEEEEEE
Confidence 0000000011224569999998 5889999999999999988876665567899999999999974
No 53
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.72 E-value=2.6e-16 Score=111.27 Aligned_cols=108 Identities=18% Similarity=0.239 Sum_probs=77.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|+.|.|+|++++.+||+++|||++..+.. . ..|+..+.. +..+.+... .
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~----~--~~~l~~~~~-----------------~~~i~l~~~--~--- 57 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTA----K--ATYFRSDAR-----------------DHTLVYIEG--D--- 57 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCC----C--eEEEEcCCc-----------------cEEEEEEeC--C---
Confidence 78999999999999999999999999875421 1 233432211 233444211 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCC----CccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDG----GKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~----~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.+..|++|.|++ +++++++|+++|+++...+.. ......+||+|||||.||++.+.
T Consensus 58 -------------~~~~~iaf~v~~~~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~f~DPdG~~iE~~~~~ 120 (124)
T cd08361 58 -------------PAEQASGFELRDDDALESAATELEQYGHEVRRGTAEECELRKVKAFIAFRDPSGNSIELVVRP 120 (124)
T ss_pred -------------CceEEEEEEECCHHHHHHHHHHHHHcCCceEEcCHHHhhcCCcceEEEEECcCCCEEEEEEee
Confidence 134799999985 999999999999998764421 22234679999999999998754
No 54
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.72 E-value=4.2e-16 Score=108.04 Aligned_cols=110 Identities=23% Similarity=0.373 Sum_probs=77.4
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 029933 32 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 111 (185)
Q Consensus 32 ~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 111 (185)
+.|.|+|++++++||+++||+++.... + .+.. +..++ ...+.++.......
T Consensus 2 ~~l~v~d~~~a~~FY~~~lg~~~~~~~--~--~~~~--~~~~~------------------~~~~~l~~~~~~~~----- 52 (114)
T cd07261 2 VLLYVEDPAASAEFYSELLGREPVELS--P--TFAL--FVLGS------------------GVKLGLWSRHTVEP----- 52 (114)
T ss_pred EEEEECCHHHHHHHHHHHcCCCccCCC--C--ceEE--EEeCC------------------CcEEEEeeccccCC-----
Confidence 578999999999999999999977642 1 2222 22111 23555543322110
Q ss_pred CCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 112 GYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 112 ~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
.. ....+..|++|.|++ ++++++++.++|+++..+|....+++.++|+|||||.|||+.
T Consensus 53 -~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~~ 114 (114)
T cd07261 53 -AS---DATGGGSELAFMVDDGAAVDALYAEWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVFA 114 (114)
T ss_pred -CC---CCCCCceEEEEEcCCHHHHHHHHHHHHHCCCeEecCccccCCccEEEEECCCCCEEEeeC
Confidence 00 011255799999985 889999999999999988866556677999999999999963
No 55
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.72 E-value=1.2e-16 Score=112.33 Aligned_cols=109 Identities=20% Similarity=0.278 Sum_probs=77.1
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+++|+.|.|+|++++++||+++||+++..... + ..++..+ ...+.+......
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~~~--~----~~~~~~~-------------------~~~~~l~~~~~~--- 52 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVRWD--K----GAYLEAG-------------------DLWLCLSVDANV--- 52 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEecC--C----ceEEecC-------------------CEEEEEecCCCC---
Confidence 47899999999999999999999999876522 1 1222221 122333211110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe--CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v--~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
....+..|++|.+ +|+++++++++++|+++..++... +..+||+|||||.|||++..
T Consensus 53 ----------~~~~~~~hi~f~v~~~dl~~~~~~l~~~G~~~~~~~~~~--~~~~~f~DPdG~~ie~~~~~ 111 (121)
T cd07244 53 ----------GPAKDYTHYAFSVSEEDFASLKEKLRQAGVKEWKENTSE--GDSFYFLDPDGHKLELHVGS 111 (121)
T ss_pred ----------CCCCCeeeEEEEeCHHHHHHHHHHHHHcCCcccCCCCCC--ccEEEEECCCCCEEEEEeCC
Confidence 0012567999999 579999999999999987655432 35799999999999998754
No 56
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.71 E-value=3.2e-16 Score=110.01 Aligned_cols=116 Identities=20% Similarity=0.287 Sum_probs=72.2
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
|+.|.|+|+++|++||+++||+++..... .+ ..+..+ +..+.+...........
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~-------------------~~~~~l~~~~~~~~~~~- 55 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRSSE----TW--VDFDFF-------------------GHQLVAHLSPNFNADAS- 55 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeeccC----Cc--cccccc-------------------CcEEEEEeccCCCcccc-
Confidence 89999999999999999999999865411 11 112111 12233221111100000
Q ss_pred CCCCCCCCCCCCceEEE--EEeCCHHHHHHHHHhcCCEEeecCCC-----CccceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIG--ITVDDVYKACERFERLGVEFAKKPDG-----GKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~--~~v~dv~~~~~~l~~~G~~~~~~~~~-----~~~~~~~~~~DPdG~~iEl~~ 174 (185)
.........+..|++ +.++|+++++++|+++|+++..+|.. ....+.+||+|||||.|||..
T Consensus 56 --~~~~~~~~~~~~h~~~~~~~~dv~~~~~~l~~~g~~~~~~p~~~~~~~~~~~~~~~~~DPdG~~iE~~~ 124 (125)
T cd08357 56 --DNAVDGHPVPVPHFGLILSEEEFDALAERLEAAGVEFLIEPYTRFEGQPGEQETFFLKDPSGNALEFKA 124 (125)
T ss_pred --cCCCCCCccCCceEEEEEeHHHHHHHHHHHHHCCCcEecCcceeccCCcCceeEEEEECCCCCEEEEee
Confidence 000001111345665 56689999999999999999876642 122367999999999999975
No 57
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=99.71 E-value=5e-16 Score=108.47 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=76.9
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+|+|+.|.|+|++++++||+++|||++..... .+ .++..++. ....+.+. ...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~~~----~~--~~~~~~~~----------------~~~~~~~~---~~~-- 55 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAEDD----GI--VYLRATGS----------------EHHILRLR---RSD-- 55 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEecC----CE--EEEECCCC----------------ccEEEEec---cCC--
Confidence 78999999999999999999999999875421 22 23332110 01122221 110
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCEEeecCC--C-CccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPD--G-GKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v---~dv~~~~~~l~~~G~~~~~~~~--~-~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
..+..|++|.| +++++++++++++|+++...+. . .+.++.+||+||+||.|||+..
T Consensus 56 ------------~~~~~~~~~~v~~~~~l~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~iel~~~ 117 (120)
T cd08362 56 ------------RNRLDVVSFSVASRADVDALARQVAARGGTVLSEPGATDDPGGGYGFRFFDPDGRLIEFSAD 117 (120)
T ss_pred ------------CCCCceEEEEeCCHHHHHHHHHHHHHcCCceecCCcccCCCCCceEEEEECCCCCEEEEEec
Confidence 01457999999 4799999999999999886652 1 2335678999999999999874
No 58
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=99.70 E-value=4e-16 Score=109.26 Aligned_cols=110 Identities=25% Similarity=0.302 Sum_probs=76.6
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|+.|.|+|++++++||+++||+++..... .+ .++...... .+..+.+... .
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~----~~--~~~~~~~~~---------------~~~~~~~~~~--~--- 57 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEEDD----DR--IYLRGLEEF---------------IHHSLVLTKA--P--- 57 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEeccCC----Ce--EEEEecCCC---------------ceEEEEEeeC--C---
Confidence 79999999999999999999999999876521 12 222211000 0223333211 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCC-CC-ccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD-GG-KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~-~~-~~~~~~~~~DPdG~~iEl~~~ 175 (185)
..+..|++|.|. |+++++++++++|+++...|. .. ..+..+|+.|||||.||++..
T Consensus 58 ------------~~~~~hi~~~v~~~~dv~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~DPdG~~ve~~~~ 118 (121)
T cd07266 58 ------------VAGLGHIAFRVRSEEDLDKAEAFFQELGLPTEWVEAGEEPGQGRALRVEDPLGFPIEFYAE 118 (121)
T ss_pred ------------CCceeEEEEECCCHHHHHHHHHHHHHcCCCcccccCCcCCCCccEEEEECCCCCEEEEEec
Confidence 025689999994 799999999999999876532 22 223579999999999999854
No 59
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=99.70 E-value=2.5e-16 Score=107.91 Aligned_cols=107 Identities=25% Similarity=0.394 Sum_probs=72.6
Q ss_pred EEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCCC
Q 029933 34 FRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKGY 113 (185)
Q Consensus 34 l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~ 113 (185)
|.|+|++++++||+++|||++..... .+..+..+.... .....+.......
T Consensus 1 l~v~d~~~a~~FY~~~lg~~~~~~~~----~~~~~~~~~~~~-----------------~~~~~~~~~~~~~-------- 51 (108)
T PF12681_consen 1 LPVSDLEAAAAFYEDVLGFEVVFDDP----DYVDFSLGFRFH-----------------DGVIEFLQFPDPP-------- 51 (108)
T ss_dssp EEESSHHHHHHHHHHTTTSEEEEEET----SEEEEEETEEEE-----------------EEEEEEEEEESSS--------
T ss_pred CccCCHHHHHHHHHHhcCCEEEEeCC----CeEEEEeccchh-----------------hhhHHHccCCccc--------
Confidence 68999999999999999999998522 222222221000 1122332221110
Q ss_pred CCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCcc-ceEEEEECCCCcEEEEe
Q 029933 114 HNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKL-KGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 114 ~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~DPdG~~iEl~ 173 (185)
....+..|++|.|+|+++++++++++|+++..+|....+ .+.+++.|||||+|||+
T Consensus 52 ----~~~~~~~~~~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~ 108 (108)
T PF12681_consen 52 ----GPPGGGFHLCFEVEDVDALYERLKELGAEIVTEPRDDPWGQRSFYFIDPDGNRIEFC 108 (108)
T ss_dssp ----SSSSSEEEEEEEESHHHHHHHHHHHTTSEEEEEEEEETTSEEEEEEE-TTS-EEEEE
T ss_pred ----cCCCceeEEEEEEcCHHHHHHHHHHCCCeEeeCCEEcCCCeEEEEEECCCCCEEEeC
Confidence 112366899999999999999999999999887755433 36899999999999986
No 60
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=99.70 E-value=4.5e-16 Score=109.18 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=73.7
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC-C
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES-D 107 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~-~ 107 (185)
|+|++|.|+|+++|++||+. |||++..... ... ...+..++ ...+.+........ .
T Consensus 1 ~~~i~l~V~D~~~a~~FY~~-LGf~~~~~~~--~~~--~~~~~~~~------------------~~~l~l~~~~~~~~~~ 57 (122)
T cd07235 1 LDAVGIVVADMAKSLDFYRR-LGFDFPEEAD--DEP--HVEAVLPG------------------GVRLAWDTVESIRSFT 57 (122)
T ss_pred CceEEEEeccHHHHHHHHHH-hCceecCCcC--CCC--cEEEEeCC------------------CEEEEEEcccceeeec
Confidence 57999999999999999975 9998765421 111 11122111 12232211100000 0
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccc-eEEEEECCCCcEEEEe
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIF 173 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~ 173 (185)
+. .. ....+..|++|.|+ |+++++++|+++|+++..+|....++ +.++|+|||||.|||+
T Consensus 58 ~~---~~---~~~~~~~~l~~~~~~~~dvd~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DPdG~~iel~ 121 (122)
T cd07235 58 PG---WT---PTGGHRIALAFLCETPAEVDALYAELVGAGYPGHKEPWDAPWGQRYAIVKDPDGNLVDLF 121 (122)
T ss_pred CC---CC---CCCCCcEEEEEEcCCHHHHHHHHHHHHHCCCCcCCCCccCCCCCEEEEEECCCCCEEEEe
Confidence 00 00 01124468889875 79999999999999988877654444 6789999999999997
No 61
>PLN02300 lactoylglutathione lyase
Probab=99.70 E-value=1e-15 Score=123.09 Aligned_cols=127 Identities=31% Similarity=0.545 Sum_probs=93.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|+.|.|+|++++.+||+++|||++......++.++...++.+++.. ....+++....+...
T Consensus 154 ~~~~~~l~~~d~~~a~~Fy~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~lel~~~~~~~~- 217 (286)
T PLN02300 154 PLCQVMLRVGDLDRSIKFYEKAFGMKLLRKRDNPEYKYTIAMMGYGPED---------------KTTVLELTYNYGVTE- 217 (286)
T ss_pred cceeEEEEeCCHHHHHHHHHhccCCEEEeeecccccceEEEEEecCCCC---------------CccEEEEeecCCCCc-
Confidence 7889999999999999999999999998654444445666666542210 023566644322211
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCc--cceEEEEECCCCcEEEEeecCccc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIFDLKTIG 179 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~~~~~ 179 (185)
+..+ .++.|++|.|+|+++++++++++|+++..+|...+ .++.++|+|||||.|+|++...+-
T Consensus 218 -----~~~g----~~~~~i~~~v~di~~~~~~~~~~G~~v~~~p~~~p~~~~~~~~~~DPdG~~i~~~~~~~~~ 282 (286)
T PLN02300 218 -----YTKG----NAYAQIAIGTDDVYKTAEAIKLVGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFL 282 (286)
T ss_pred -----cccC----CceeEEEEecCCHHHHHHHHHHcCCeEecCCccCCCCceEEEEEECCCCCEEEEEccchhh
Confidence 2222 26789999999999999999999999998775433 235788999999999999987754
No 62
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=99.70 E-value=5.2e-16 Score=107.24 Aligned_cols=107 Identities=21% Similarity=0.310 Sum_probs=74.3
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
|++|.|+|++++++||+++||+++..+.. . ..++..+ ...+.+...... .
T Consensus 1 Hv~l~v~d~~~s~~Fy~~~lg~~~~~~~~--~----~~~~~~~-------------------~~~l~~~~~~~~-~---- 50 (113)
T cd08345 1 HITLIVKDLNKSIAFYRDILGAELIYSSS--K----EAYFELA-------------------GLWICLMEEDSL-Q---- 50 (113)
T ss_pred CeeEEECCHHHHHHHHHHhcCCeeeeccC--c----eeEEEec-------------------CeEEEeccCCCc-C----
Confidence 78999999999999999999999876531 1 1222211 123333221110 0
Q ss_pred CCCCCCCCCCCCceEEEEEeC--CHHHHHHHHHhcCCEEeecC-CCCccceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIGITVD--DVYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~--dv~~~~~~l~~~G~~~~~~~-~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
. ...++.|++|.|+ ++++++++++++|+++.... .....++.+|++|||||.|||+.
T Consensus 51 --~-----~~~~~~hiaf~v~~~d~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~DPdG~~iEi~~ 110 (113)
T cd08345 51 --G-----PERTYTHIAFQIQSEEFDEYTERLKALGVEMKPERPRVQGEGRSIYFYDPDGHLLELHA 110 (113)
T ss_pred --C-----CCCCccEEEEEcCHHHHHHHHHHHHHcCCccCCCccccCCCceEEEEECCCCCEEEEEe
Confidence 0 1125689999995 79999999999999987543 22334568999999999999985
No 63
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.70 E-value=9.7e-16 Score=123.89 Aligned_cols=115 Identities=19% Similarity=0.299 Sum_probs=78.8
Q ss_pred ceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCce-EEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 029933 26 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 104 (185)
Q Consensus 26 ~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 104 (185)
..+|+|++|.|+|++++++||+++|||++..+...+.... ...|+..+.. ...+.+...
T Consensus 143 ~~~i~Hi~l~V~Dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~--- 202 (303)
T TIGR03211 143 ARRLDHCLLYGEDVAENTRFFTEVLGFRLTEQVVLGDGKEQAAAWLSVSNK-----------------AHDIAFVGD--- 202 (303)
T ss_pred ceeEEEEeEEeCCHHHHHHHHHHhcCCEEEeeEEcCCCcEEEEEEEEcCCC-----------------CcccceecC---
Confidence 3579999999999999999999999999876543322221 2334432110 112222100
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCc--cceEEEEECCCCcEEEEe
Q 029933 105 ESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK--LKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~--~~~~~~~~DPdG~~iEl~ 173 (185)
...+.++||||.|+| +++++++|+++|+++...|.... .+..+||+|||||.||++
T Consensus 203 -------------~~~g~~~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iEl~ 263 (303)
T TIGR03211 203 -------------PEPGKLHHVSFFLDSWEDVLKAADVMSKNDVSIDIGPTRHGITRGQTIYFFDPSGNRNETF 263 (303)
T ss_pred -------------CCCCceEEEEEEcCCHHHHHHHHHHHHhCCCceeeCCcccCCCCceEEEEECCCCCEEEEe
Confidence 011247899999996 55578899999999887764332 245899999999999998
No 64
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.69 E-value=8.2e-16 Score=106.63 Aligned_cols=109 Identities=18% Similarity=0.283 Sum_probs=72.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
+|.|++|.|.|++++++||+ +|||++..+. + . ..+...+.. +..+.+... ..
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~-~lG~~~~~~~---~-~--~~~~~~~~~-----------------~~~~~~~~~--~~-- 53 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYE-AFGLDVREEG---D-G--LELRTAGND-----------------HRWARLLEG--AR-- 53 (112)
T ss_pred ceeEEEEecCCHHHHHHHHH-HhCCcEEeec---C-c--eEEEecCCC-----------------ceEEEeecC--CC--
Confidence 68999999999999999997 6999987542 1 1 122221110 122333211 10
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
......++.+.++|+++++++|+++|+++..++.. ...+.+||.|||||.|||..-.
T Consensus 54 -----------~~~~~~~~~~~~~d~~~~~~~l~~~Gi~~~~~~~~-~~~~~~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 54 -----------KRLAYLSFGIFEDDFAAFARHLEAAGVALAAAPPG-ADPDGVWFRDPDGNLLQVKVAE 110 (112)
T ss_pred -----------CceeeEEEEeEhhhHHHHHHHHHHcCCceecCCCc-CCCCEEEEECCCCCEEEEecCC
Confidence 00122344555689999999999999998776522 2234699999999999998643
No 65
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=99.69 E-value=2.1e-15 Score=103.71 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=75.9
Q ss_pred EEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCCC
Q 029933 33 MFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFKG 112 (185)
Q Consensus 33 ~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~ 112 (185)
.|.|+|++++++||+++|||++..... ...+ .++..+ ...+.+........
T Consensus 3 ~i~v~d~~~s~~FY~~~lg~~~~~~~~--~~~~--~~~~~~-------------------~~~~~l~~~~~~~~------ 53 (112)
T cd08349 3 VLPVSDIERSLAFYRDVLGFEVDWEHP--EPGY--AFLSRG-------------------GAQLMLSEHDGDEP------ 53 (112)
T ss_pred EEEECCHHHHHHHHHhccCeEEEEEcC--CCcE--EEEEeC-------------------CEEEEEeccCCCCC------
Confidence 688999999999999999999877632 1222 233321 34566543321110
Q ss_pred CCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCE-EeecCCCCcc-ceEEEEECCCCcEEEEee
Q 029933 113 YHNGNSEPRGFGHIGITVDDVYKACERFERLGVE-FAKKPDGGKL-KGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 113 ~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~-~~~~~~~~~~-~~~~~~~DPdG~~iEl~~ 174 (185)
. ...+..|++|.++|+++++++++++|+. +..++..... .+.+|++||+||.|||+|
T Consensus 54 ~-----~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~g~~~~~~~DP~G~~ie~~~ 112 (112)
T cd08349 54 V-----PLGRGGSVYIEVEDVDALYAELKAKGADLIVYPPEDQPWGMREFAVRDPDGNLLRFGE 112 (112)
T ss_pred C-----CCCCcEEEEEEeCCHHHHHHHHHHcCCcceecCccCCCcccEEEEEECCCCCEEEecC
Confidence 0 1124569999999999999999999998 5555543333 367999999999999976
No 66
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=99.69 E-value=2.6e-15 Score=105.04 Aligned_cols=110 Identities=25% Similarity=0.381 Sum_probs=76.0
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 109 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 109 (185)
.|+.|.|+|++++++||+++||++...+.. .. ..|...+. ...+.+... ...
T Consensus 3 ~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~----~~-~~~~~~~~------------------~~~~~~~~~--~~~--- 54 (120)
T cd07254 3 FHVALNVDDLEASIAFYSKLFGVEPTKVRD----DY-AKFLLEDP------------------RLNFVLNER--PGA--- 54 (120)
T ss_pred EEEEEEeCCHHHHHHHHHHHhCCeEecccC----Ce-eEEEecCC------------------ceEEEEecC--CCC---
Confidence 499999999999999999999998765521 11 22221110 122323211 100
Q ss_pred CCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCc---cceEEEEECCCCcEEEEeecC
Q 029933 110 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 110 ~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~---~~~~~~~~DPdG~~iEl~~~~ 176 (185)
. ..+..|++|.|++ +++++++|+++|+++...+.... ..+.+|++||+||.|||+++.
T Consensus 55 ---~------~~~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~DP~G~~ie~~~~~ 118 (120)
T cd07254 55 ---P------GGGLNHLGVQVDSAEEVAEAKARAEAAGLPTFKEEDTTCCYAVQDKVWVTDPDGNAWEVFVTL 118 (120)
T ss_pred ---C------CCCeeEEEEEeCCHHHHHHHHHHHHHcCCeEEccCCcccccCCcceEEEECCCCCEEEEEEee
Confidence 0 0266899999987 88899999999999887664322 235799999999999999854
No 67
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.69 E-value=1.7e-15 Score=106.33 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=76.5
Q ss_pred EEEEEEEeCChHHHHHHHHHh---cCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRV---LGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE 105 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~---LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~ 105 (185)
+.|++|.|+|+++|++||+++ ||+++..+. ...+ ..+...+. ...+.+.......
T Consensus 1 l~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~---~~~~-~~~~~~~~------------------~~~~~l~~~~~~~ 58 (123)
T cd07262 1 IDHVTLGVNDLERARAFYDAVLAPLGIKRVMED---GPGA-VGYGKGGG------------------GPDFWVTKPFDGE 58 (123)
T ss_pred CcEEEEecCcHHHHHHHHHHHHhhcCceEEeec---CCce-eEeccCCC------------------CceEEEeccccCC
Confidence 479999999999999999999 699887653 1122 22222110 3456664332111
Q ss_pred CCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCC----ccceEEEEECCCCcEEEEe
Q 029933 106 SDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG----KLKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 106 ~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~----~~~~~~~~~DPdG~~iEl~ 173 (185)
. . ...+..||+|.|++ ++++++++.++|+.+..+|... ...+.+||+|||||.|||+
T Consensus 59 ~------~-----~~~~~~hi~f~v~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~DPdG~~ie~~ 122 (123)
T cd07262 59 P------A-----TAGNGTHVAFAAPSREAVDAFHAAALAAGGTDEGAPGLRPHYGPGYYAAYVRDPDGNKIEAV 122 (123)
T ss_pred C------C-----CCCCceEEEEECCCHHHHHHHHHHHHHcCCccCCCCCCCCCCCCCeEEEEEECCCCCEEEEe
Confidence 0 0 11134699999986 7889999999999988776432 2234689999999999997
No 68
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=99.68 E-value=1.6e-15 Score=106.37 Aligned_cols=107 Identities=16% Similarity=0.130 Sum_probs=74.4
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
..+|.|+|+++|++||++ |||++..+.. . .| .++..+ ...+++.......
T Consensus 5 ~~~l~v~Dl~~s~~FY~~-lG~~~~~~~~--~-~~--~~~~~~-------------------~~~l~l~~~~~~~----- 54 (120)
T cd08350 5 IPNLPSRDLDATEAFYAR-LGFSVGYRQA--A-GY--MILRRG-------------------DLELHFFAHPDLD----- 54 (120)
T ss_pred cceeEcCCHHHHHHHHHH-cCCEEEecCC--C-CE--EEEEcC-------------------CEEEEEEecCcCC-----
Confidence 568999999999999999 9999876532 1 23 223221 3356665321110
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEe-------ecCCC-CccceEEEEECCCCcEEEEeec
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-------KKPDG-GKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~-------~~~~~-~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+. ....|++|.|+|+++++++|+++|+++. .++.. .++.+.+||+|||||+|||.|.
T Consensus 55 -~~-------~~~~~~~~~v~dvd~~~~~l~~~G~~~~~~~~~~~~~~~~~~~g~~~~~~~DPdG~~ie~~~~ 119 (120)
T cd08350 55 -PA-------TSPFGCCLRLPDVAALHAEFRAAGLPETGSGIPRITPPEDQPWGMREFALVDPDGNLLRFGQP 119 (120)
T ss_pred -CC-------CCcceEEEEeCCHHHHHHHHHHhCccccccCCCcccCCcCCCCceeEEEEECCCCCEEEeecC
Confidence 00 1235899999999999999999999853 23332 2344689999999999999874
No 69
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=99.67 E-value=2.4e-15 Score=101.95 Aligned_cols=111 Identities=29% Similarity=0.377 Sum_probs=81.7
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
|++|.|+|++++.+||+++||++......... ....++..+ ...+++....+...
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~~~--~~~~~~~~~-------------------~~~i~l~~~~~~~~---- 55 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGNGG--AEFAVLGLG-------------------GTRLELFEGDEPAP---- 55 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeeccCC--EEEEEEecC-------------------CceEEEecCCCCCC----
Confidence 78999999999999999999999888753211 233334322 35677765432211
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCC-CCccceEEEEECCCCcEEEE
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD-GGKLKGVAFIKDPDDYWIEI 172 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~-~~~~~~~~~~~DPdG~~iEl 172 (185)
. ....+..|++|.|+|+++++++|+++|+.+...+. .......+|+.||+||.|||
T Consensus 56 --~----~~~~~~~~~~~~v~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~Dp~G~~~~~ 112 (112)
T cd06587 56 --A----PSGGGGVHLAFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDPDGNLIEL 112 (112)
T ss_pred --c----ccCCCeeEEEEECCCHHHHHHHHHHcCCcccCCCcCCCCCcEEEEEECCCCcEEeC
Confidence 0 11236689999999999999999999999887764 34445689999999999986
No 70
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=99.67 E-value=2.9e-15 Score=108.48 Aligned_cols=111 Identities=16% Similarity=0.178 Sum_probs=77.0
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 109 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 109 (185)
.|+.|.|+|++++++||+++|||++..+.. + ...|+...... .+..+.+. .
T Consensus 1 ~Hv~l~V~Dle~s~~Fy~~vLG~~~~~~~~--~---~~~~l~~~~~~---------------~~h~~~~~----~----- 51 (141)
T cd07258 1 GHVVIGSENFEASRDSLVEDFGFRVSDLIE--D---RIVFMRCHPNP---------------FHHTFAVG----P----- 51 (141)
T ss_pred CcEEEecCCHHHHHHHHHhcCCCEeeeeeC--C---EEEEEEcCCCC---------------Ccceeeec----c-----
Confidence 389999999999999999999999876632 1 23444422110 01122211 0
Q ss_pred CCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCC--ccceEEEEECCCCcEEEEeecCc
Q 029933 110 FKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 110 ~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
....+++||+|.|+| +++++++|+++|+++...|... ...+.+||+||||+.||+.....
T Consensus 52 --------~~~~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~~p~~~~~~~~~~~y~~DPdG~~iE~~~~~~ 116 (141)
T cd07258 52 --------ASSSHFHHVNFMVTDIDDIGKALYRIKAHDVKVVFGPGRHPPSDSIFFYFLDPDGITVEYSFGME 116 (141)
T ss_pred --------CCCCceEEEEEECCCHHHHHHHHHHHHHCCCcEEeCCceECCCCCEEEEEECCCCCEEEEEeCcc
Confidence 112378999999986 4567999999999987766432 22357899999999999976543
No 71
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.66 E-value=4.6e-15 Score=119.35 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=79.2
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 104 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 104 (185)
...+|+|++|.|+|++++++||+++|||++..........+...++..... +..+.+.. .
T Consensus 133 ~~~~i~Hv~l~v~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~--~- 192 (294)
T TIGR02295 133 SPVRLDHFNVFVPDVQRALRFYKEELGFRVTEYTEDDEGNLAAAWLHRKGG-----------------VHDIALTN--G- 192 (294)
T ss_pred cceeeeeEEEEeCCHHHHHHHHHHhcCCEEEEEeccCCCcEEEEEEecCCC-----------------cCceEeec--C-
Confidence 345899999999999999999999999998765432222322333322110 12233210 0
Q ss_pred CCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCE--EeecCCCCc--cceEEEEECCCCcEEEEeecC
Q 029933 105 ESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVE--FAKKPDGGK--LKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 105 ~~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~--~~~~~~~~~--~~~~~~~~DPdG~~iEl~~~~ 176 (185)
...+++||||.|+| +++++++|+++|++ +...|.... ....+|++||+||.|||+...
T Consensus 193 --------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~~~~~~~~p~~~~~~~~~~~y~~DP~G~~iEl~~~~ 257 (294)
T TIGR02295 193 --------------NGPRLHHIAYWVHDPLNIIKACDILASAGLSDSIERGPGRHGVSNAFFLYLRDPDGHRIELYTGD 257 (294)
T ss_pred --------------CCCceeeEEEEcCCHHHHHHHHHHHHhCCCCcccccCCccCCCCcceEEEEECCCCCEEEEEecc
Confidence 01267999999998 55568999999997 544443211 224689999999999998743
No 72
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=6.8e-15 Score=102.40 Aligned_cols=104 Identities=20% Similarity=0.228 Sum_probs=70.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCC
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDF 110 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~ 110 (185)
-..|+|+|+++|++||++ |||++..+. .. ..++..+ ...+.+.......
T Consensus 4 ~~~l~v~Dl~~s~~FY~~-LGf~~~~~~----~~--~~~l~~~-------------------~~~l~l~~~~~~~----- 52 (113)
T cd08356 4 RPFIPAKDFAESKQFYQA-LGFELEWEN----DN--LAYFRLG-------------------NCAFYLQDYYVKD----- 52 (113)
T ss_pred eeccccccHHHHHHHHHH-hCCeeEecC----CC--EEEEEcC-------------------CEEEEeecCCCcc-----
Confidence 357889999999999987 999998762 12 2333322 2344442211110
Q ss_pred CCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEe-----ecCC-CCccceEEEEECCCCcEEEEee
Q 029933 111 KGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFA-----KKPD-GGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 111 ~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~-----~~~~-~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
. ....+++|.|+|+++++++|+++|+++. .++. ..++.+.++|+|||||+|+|.+
T Consensus 53 --~-------~~~~~~~~~v~did~~~~~l~~~G~~~~~~~~~~~~~~~~~g~r~f~~~DPdGn~~~~~~ 113 (113)
T cd08356 53 --W-------AENSMLHLEVDDLEAYYEHIKALGLPKKFPGVKLPPITQPWWGREFFLHDPSGVLWHIGQ 113 (113)
T ss_pred --c-------ccCCEEEEEECCHHHHHHHHHHcCCcccccceecCccccCCCcEEEEEECCCccEEEeeC
Confidence 0 0225899999999999999999998753 2222 2344578999999999999864
No 73
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=99.64 E-value=1.1e-14 Score=101.53 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=74.6
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCCCC
Q 029933 32 TMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPDFK 111 (185)
Q Consensus 32 ~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~ 111 (185)
|.|.|+|++++.+||+++|||++..+. ... ..++..+ ...++++...........
T Consensus 2 i~l~v~d~~~a~~FY~~~lg~~~~~~~---~~~--~~~~~~~-------------------~~~~~l~~~~~~~~~~~~- 56 (121)
T cd07251 2 ITLGVADLARSRAFYEALLGWKPSADS---NDG--VAFFQLG-------------------GLVLALFPREELAKDAGV- 56 (121)
T ss_pred eeEeeCCHHHHHHHHHHhcCceecccC---CCc--eEEEEcC-------------------CeEEEEecchhhhhhcCC-
Confidence 689999999999999999999987651 112 2233321 234555432111100000
Q ss_pred CCCCCCCCCCCceEEEEEe---CCHHHHHHHHHhcCCEEeecCCCCc-cceEEEEECCCCcEEEEeec
Q 029933 112 GYHNGNSEPRGFGHIGITV---DDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 112 ~~~~~~~~~~g~~hi~~~v---~dv~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iEl~~~ 175 (185)
... ....+..|++|.+ +|+++++++++++|+++..++.... +++.+|++||+||+|||..+
T Consensus 57 -~~~--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~~~g~~~~~~~DP~Gn~iei~~~ 121 (121)
T cd07251 57 -PVP--PPGFSGITLAHNVRSEEEVDAVLARAAAAGATIVKPPQDVFWGGYSGYFADPDGHLWEVAHN 121 (121)
T ss_pred -CCC--CCCccceEEEEEcCCHHHHHHHHHHHHhCCCEEecCCccCCCCceEEEEECCCCCEEEEeeC
Confidence 000 0111334566655 5899999999999999987765433 35689999999999999753
No 74
>TIGR03211 catechol_2_3 catechol 2,3 dioxygenase. Members of this family all are enzymes active as catechol 2,3 dioxygenase (1.13.11.2), although some members have highly significant activity on catechol derivatives such as 3-methylcatechol, 3-chlorocatechol, and 4-chlorocatechol (see Mars, et al.). This enzyme is also called metapyrocatechase, as it performs a meta-cleavage (an extradiol ring cleavage), in contrast to the ortho-cleavage (intradiol ring cleavage)performed by catechol 1,2-dioxygenase (EC 1.13.11.1), also called pyrocatechase.
Probab=99.63 E-value=1e-14 Score=117.94 Aligned_cols=113 Identities=22% Similarity=0.282 Sum_probs=80.2
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
++++|++|.|+|++++++||+++|||++..+.. . ..++..... ..+..+.+...
T Consensus 3 ~~i~Hi~l~V~Dle~s~~FY~~~LG~~~~~~~~--~----~~~~~~~~~---------------~~~~~~~l~~~----- 56 (303)
T TIGR03211 3 MRLGHVELRVLDLEESLKHYTDVLGLEETGRDG--Q----RVYLKAWDE---------------WDHYSVILTEA----- 56 (303)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHhcCCEEeeecC--c----eEEEEeccc---------------cccceEeeccC-----
Confidence 379999999999999999999999999876532 1 122221000 00223333211
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCC--CCccceEEEEECCCCcEEEEeecCc
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPD--GGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~--~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
...++.||+|.|+ ++++++++|+++|+++...+. ....++.+||+|||||.|||++...
T Consensus 57 ------------~~~g~~hiaf~v~~~~dl~~~~~~l~~~G~~~~~~~~~~~~~~g~~~~~~DPdG~~iEl~~~~~ 120 (303)
T TIGR03211 57 ------------DTAGLDHMAFKVESEADLERLVKRLEAYGVGTGWIPAGELPGVGRRVRFTLPSGHTMELYAEKE 120 (303)
T ss_pred ------------CCCceeEEEEEeCCHHHHHHHHHHHHHcCCCeeeccCCCCCCcceEEEEECCCCCEEEEEEccc
Confidence 0126789999998 799999999999999876554 2233467999999999999998554
No 75
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.63 E-value=1.3e-14 Score=116.42 Aligned_cols=115 Identities=20% Similarity=0.358 Sum_probs=78.1
Q ss_pred ceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC--C-ceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 029933 26 GYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE--M-KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 102 (185)
Q Consensus 26 ~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 102 (185)
..+|+|++|.|+|++++++||+++|||++........ + .+..+|+..+.. +..+.+...
T Consensus 140 ~~~l~Hv~l~v~Dle~s~~FY~~~LGf~~~~~~~~~~~~g~~~~~~~l~~~~~-----------------~~~~~l~~~- 201 (286)
T TIGR03213 140 DQGLGHIVLRVPDVDAALAFYTEVLGFQLSDVIDLPAGPGVTVRPYFLHCNER-----------------HHSLAFAAG- 201 (286)
T ss_pred CccccEEEEEcCCHHHHHHHHHHccCCeEEEeEcccCCCCCcceEEEEEECCC-----------------cceEEEecC-
Confidence 3589999999999999999999999999876532211 1 112344433211 223333211
Q ss_pred CCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHH---HHHHHHhcCCEEeecCCCC--ccceEEEEECCCCcEEEEee
Q 029933 103 GTESDPDFKGYHNGNSEPRGFGHIGITVDDVYK---ACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~---~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~ 174 (185)
. ...+++||+|.|+|+++ ++++|+++|+ ....+... .+...+|++||+||+||+..
T Consensus 202 -~--------------~~~~~~Hiaf~v~d~~~v~~~~~~l~~~G~-~~~~~~r~~~~~~~~~y~~DP~G~~iE~~~ 262 (286)
T TIGR03213 202 -P--------------SEKRLNHLMLEVDTLDDVGLALDRVDADGI-VASTLGRHTNDHMVSFYVATPSGWLVEYGW 262 (286)
T ss_pred -C--------------CCCceEEEEEEcCCHHHHHHHHHHHHHCCC-EEecCCcCCCCCeEEEEEECCCCcEEEeec
Confidence 0 11267899999998776 7999999999 44433222 23457999999999999976
No 76
>TIGR02295 HpaD 3,4-dihydroxyphenylacetate 2,3-dioxygenase. The enzyme from Bacillus brevis contains manganese.
Probab=99.60 E-value=3.7e-14 Score=114.07 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=79.2
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
.+++|+.|.|+|++++++||+++|||++..+.. . ..++...... ....+.+... .
T Consensus 3 ~~i~hv~l~v~Dl~~s~~FY~~vLGl~~~~~~~----~--~~~~~~~~~~---------------~~~~l~l~~~--~-- 57 (294)
T TIGR02295 3 LRTGHVELRVTDLDKSREFYVDLLGFRETESDK----E--YIYLRGIEEF---------------QHHSLVLTKA--P-- 57 (294)
T ss_pred ceeeEEEEEeCCHHHHHHHHHHccCCEEEEecC----C--eEEEeccCcC---------------CceEEEeeeC--C--
Confidence 379999999999999999999999999876521 1 1222211000 0123333211 0
Q ss_pred CCCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 107 DPDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 107 ~~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
..++.|++|.|+ |+++++++|+++|+++...+..+ ..+.+||+|||||.|||++...
T Consensus 58 -------------~~~~~hiaf~v~~~~dl~~~~~~l~~~Gv~v~~~~~~~-~~~~~~~~DPdG~~iEl~~~~~ 117 (294)
T TIGR02295 58 -------------SAALSYIGFRVSKEEDLDKAADFFQKLGHPVRLVRDGG-QPEALRVEDPFGYPIEFYFEME 117 (294)
T ss_pred -------------CcCccEEEEEeCCHHHHHHHHHHHHhcCCcEEeecCCC-CceEEEEECCCCCEEEEEEchh
Confidence 015689999997 78999999999999987755332 3467999999999999998543
No 77
>TIGR03213 23dbph12diox 2,3-dihydroxybiphenyl 1,2-dioxygenase. Members of this protein family all have activity as 2,3-dihydroxybiphenyl 1,2-dioxygenase, the third enzyme of a pathway for biphenyl degradation. Many of the extradiol ring-cleaving dioxygenases, to which these proteins belong, act on a range of related substrates. Note that some members of this family may be found operons for toluene or naphthalene degradation, where other activities of the same enzyme may be more significant; the trusted cutoff for this model is set relatively high to exclude most such instances.
Probab=99.57 E-value=6.4e-14 Score=112.50 Aligned_cols=110 Identities=18% Similarity=0.235 Sum_probs=78.2
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.|+.|.|+|+++|++||+++|||++..+.. .. ..|+..+.. +..+.+... ..
T Consensus 3 ~i~~v~l~V~Dl~~s~~FY~~~LGl~~~~~~~--~~---~~~~~~~~~-----------------~~~~~l~~~--~~-- 56 (286)
T TIGR03213 3 GLGYLGIGVSDVDAWREFATEVLGMMVASEGE--ND---ALYLRLDSR-----------------AHRIAVHPG--ES-- 56 (286)
T ss_pred eeeEEEEEeCCHHHHHHHHHhccCcccccCCC--Cc---eEEEEcCCC-----------------ceEEEEEEC--Cc--
Confidence 78999999999999999999999998765421 11 123332210 233434211 10
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCC----CCccceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPD----GGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~----~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.++.|++|.|++ +++++++|+++|+++...+. ....+..+||+|||||.|||+...
T Consensus 57 -------------~~~~~~~f~V~~~~~l~~~~~~L~~~Gv~~~~~~~~~~~~~~~~~~~~f~DPdGn~lEl~~~~ 119 (286)
T TIGR03213 57 -------------DDLAYAGWEVADEAGLDQVKEKLEKAGVAVTVASAAEARERGVLGLIKFTDPGGNPLEIYYGA 119 (286)
T ss_pred -------------CCeeeEeeeeCCHHHHHHHHHHHHHcCCceEECCHHHhhhccceEEEEEECCCCCEEEEEEcc
Confidence 145799999998 88999999999999876542 223345799999999999999743
No 78
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.56 E-value=2.7e-14 Score=108.76 Aligned_cols=129 Identities=35% Similarity=0.569 Sum_probs=103.7
Q ss_pred CCCCCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCC-----------CceEEEeeccCCCCCCCCCCccce
Q 029933 18 TARDEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPE-----------MKFSLYFLGYEDTASAPADPVDRT 86 (185)
Q Consensus 18 ~~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 86 (185)
.+++..+. ++.|+.+.|-|.++++.||+++|||++.++.++++ ++|.-.|++++..-
T Consensus 9 ~~~~~~~~--r~LH~VfkVgdr~kti~Fyt~vlgMkvLRheef~egc~aacngpyd~kwSktmvGyGpEd---------- 76 (299)
T KOG2943|consen 9 CWMKADTR--RALHYVFKVGDRAKTIDFYTEVLGMKVLRHEEFEEGCEAACNGPYDGKWSKTMVGYGPED---------- 76 (299)
T ss_pred hhhhccch--heeeEeEeecchHHHHHHHHHhhcceeeehhhhhhhhhhhcCCCcccchhhhheecCCCc----------
Confidence 44544443 89999999999999999999999999999877766 78888888886532
Q ss_pred eeecCCCcEEEEeecCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCC
Q 029933 87 VWTFGKPATIELTHNWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPD 166 (185)
Q Consensus 87 ~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPd 166 (185)
.+..+||.++++... |..|+ ++.||.+.++|+-...+.+...|.+ +.....+++.|||
T Consensus 77 -----shFViELTYNYgV~~------YelGn----dfg~i~I~s~dv~~~ve~v~~p~~~-------~~g~~~~~v~dPd 134 (299)
T KOG2943|consen 77 -----SHFVIELTYNYGVSK------YELGN----DFGGITIASDDVFSKVEKVNAPGGK-------GSGCGIAFVKDPD 134 (299)
T ss_pred -----ccEEEEEEeccCccc------eeccC----CcccEEEeHHHHHHHHHHhcCcCCc-------ccceEEEEEECCC
Confidence 278999999988865 88887 8999999999988888877766652 2222368899999
Q ss_pred CcEEEEeecCcccc
Q 029933 167 DYWIEIFDLKTIGK 180 (185)
Q Consensus 167 G~~iEl~~~~~~~~ 180 (185)
|+.++|+++.+-.+
T Consensus 135 GykF~l~~~~p~s~ 148 (299)
T KOG2943|consen 135 GYKFYLIDRGPQSD 148 (299)
T ss_pred CcEEEEeccCCCCC
Confidence 99999998666443
No 79
>COG3565 Predicted dioxygenase of extradiol dioxygenase family [General function prediction only]
Probab=99.54 E-value=1.5e-13 Score=93.45 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=85.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
.+-|++|.|.|++++++||.++||++..++. +......+.++ +..+++........+
T Consensus 4 ~~FHLA~pV~Dl~~tr~FYgevlG~~~GRst---d~wvdfDfyGH--------------------Q~v~Hl~~q~~~~~~ 60 (138)
T COG3565 4 VPFHLAIPVNDLDETRRFYGEVLGCKEGRST---DTWVDFDFYGH--------------------QVVAHLTPQPDSQGS 60 (138)
T ss_pred cceEEeeeccccHHHHhhhhhhccccccccc---ceEEEeeeccc--------------------EEEEEecCCcccccC
Confidence 5679999999999999999999999988763 22223334443 334444322222111
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCC---Cc--cceEEEEECCCCcEEEEeecCcccccc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---GK--LKGVAFIKDPDDYWIEIFDLKTIGKIG 182 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~---~~--~~~~~~~~DPdG~~iEl~~~~~~~~~~ 182 (185)
. ++..-...+.. .-+.|.++|..++.++|+++|+.+..+|.- +. -.+.+|+.||.||.+|+-..++...+|
T Consensus 61 g---~V~~~~v~~pH-fGvVl~~edW~alaerlea~gi~~~i~P~vRF~Ge~gEq~TlFl~DP~gN~lEfK~fR~~e~vF 136 (138)
T COG3565 61 G---KVDGHGVPPPH-FGVVLPVEDWFALAERLEAAGIPFHIPPKVRFKGEPGEQRTLFLFDPSGNALEFKGFRDQEQVF 136 (138)
T ss_pred c---ccCCCCCCCcc-ceEEEEHHHHHHHHHHHHHcCCCcccCceEEecCCccceEEEEEECCCCCeeeeecccchhhhh
Confidence 1 11111111112 234567789999999999999999877732 21 135789999999999998888877766
Q ss_pred C
Q 029933 183 G 183 (185)
Q Consensus 183 ~ 183 (185)
+
T Consensus 137 a 137 (138)
T COG3565 137 A 137 (138)
T ss_pred c
Confidence 4
No 80
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=99.53 E-value=5e-14 Score=97.44 Aligned_cols=97 Identities=26% Similarity=0.343 Sum_probs=72.7
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 109 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 109 (185)
+|++|.|+|++++++||+++||++.......+.......++..++. ...+||+.+.....
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~~iELi~p~~~~~--- 60 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDG-----------------PVQIELIQPLDGDS--- 60 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTE-----------------TEEEEEEEESSTTC---
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCC-----------------cEEEEEEEeCCCCc---
Confidence 6999999999999999999999987766554455555555554331 25899988755431
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecC
Q 029933 110 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 151 (185)
Q Consensus 110 ~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~ 151 (185)
++. ....|++||||.|+|+++..++|+++|+++..++
T Consensus 61 --~~~---~~~~gi~Hia~~v~D~d~~~~~l~~~G~~~~~~~ 97 (109)
T PF13669_consen 61 --PLD---RGGGGIHHIAFEVDDLDAAIARLEAQGFRVLDEG 97 (109)
T ss_dssp --HHH---HTSSEEEEEEEEESHHHHHHHHHHHTTECEEECE
T ss_pred --ccc---cCCCCEEEEEEEeCCHHHHHHHHHHCCCEEcccC
Confidence 011 0234899999999999999999999999988764
No 81
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=99.52 E-value=4.3e-13 Score=104.34 Aligned_cols=122 Identities=16% Similarity=0.303 Sum_probs=88.9
Q ss_pred CCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeec
Q 029933 22 EATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 101 (185)
Q Consensus 22 ~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 101 (185)
+.++.+.+..+.|.|+|++++..||+++||+++..+.. ..+.++.++ ...+.|...
T Consensus 4 ~~~~~~~v~~v~L~vrdL~~~~~FY~~ilGL~v~~~~~------~~v~L~vgg------------------~~LL~L~q~ 59 (265)
T COG2514 4 ALTTPTFVGAVTLNVRDLDSMTSFYQEILGLQVLEETD------GSVTLGVGG------------------TPLLTLEQF 59 (265)
T ss_pred ccCCCcEEEEEEEEeccHHHHHHHHHHhhCCeeeeccC------ceEEEeeCC------------------EEEEEEEeC
Confidence 34556689999999999999999999999999998743 223344332 235666554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 102 WGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
...... . ....|+-|++|.+++ +..++.++.+.|+.+.+. -++...-.+||.||+||-|||+..++
T Consensus 60 ~~a~~~-----~----~~~aGLyH~AfLlP~r~~L~~~l~hl~~~~~~l~Ga-~DH~vSEAlYl~DPEGNGIEiYaDrp 128 (265)
T COG2514 60 PDARRP-----P----PRAAGLYHTAFLLPTREDLARVLNHLAEEGIPLVGA-SDHLVSEALYLEDPEGNGIEIYADRP 128 (265)
T ss_pred CCCCCC-----C----ccccceeeeeeecCCHHHHHHHHHHHHhcCCccccc-CcchhheeeeecCCCCCeEEEEecCC
Confidence 333211 1 112377899999995 777788899999998743 34555568999999999999998765
No 82
>COG3324 Predicted enzyme related to lactoylglutathione lyase [General function prediction only]
Probab=99.51 E-value=1.2e-12 Score=92.13 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=82.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
.+.|..|.|+|++++++||+++|||.........+.. .+.+..+... . ...+.- ...
T Consensus 9 ~i~w~Ei~~~D~~ra~~FY~~vFgW~~~~~~~~~~~~--y~~f~~~~~~-~--------------gG~l~~----~~~-- 65 (127)
T COG3324 9 TIVWFELPVSDLERAKAFYEKVFGWTFEDYFDMGEMR--YAVFPADGAG-A--------------GGGLMA----RPG-- 65 (127)
T ss_pred ccEEEeeecCCHHHHHHHHHHhhCceecccccCCCce--EEEEECCCcc-c--------------cceecc----CCc--
Confidence 6889999999999999999999999888764322222 3333221100 0 011111 000
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCc-cceEEEEECCCCcEEEEeecC
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.. +. ....+|.|.|+|+++..++..++|.+++.++..-+ .++.+.+.||+||.|-|++..
T Consensus 66 -----~~---p~-~~~~~iy~~v~did~~l~rv~~~GG~V~~p~~~~p~~G~~a~~~Dp~Gn~~~l~s~~ 126 (127)
T COG3324 66 -----SP---PG-GGGWVIYFAVDDIDATLERVVAAGGKVLRPKTEFPGGGRIAHFVDPEGNRFGLWSPA 126 (127)
T ss_pred -----CC---CC-CCCEEEEEecCChHHHHHHHHhcCCeEEecccccCCceEEEEEECCCCCEEEEeecC
Confidence 11 01 24468889999999999999999999999887655 667899999999999998753
No 83
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=99.42 E-value=2.5e-12 Score=97.67 Aligned_cols=106 Identities=20% Similarity=0.336 Sum_probs=71.1
Q ss_pred eEEEEEEEeC--ChHHHHHHHHHhcCCEEeeeeecCC--CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCC
Q 029933 28 FMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWG 103 (185)
Q Consensus 28 ~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 103 (185)
+++|+++.|+ |++++++||+++|||+.......++ .......+..+. +...++|.....
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~-----------------g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPD-----------------GKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCC-----------------CcEEEEEecCCC
Confidence 7899999999 9999999999999999887654322 233333444321 145667765432
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecC
Q 029933 104 TESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 151 (185)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~ 151 (185)
.........+. ......|++||||.|+|+++++++|+++|+++...|
T Consensus 66 ~~~~s~~~~fl-~~~~G~Gv~HIAf~vdDI~~~~~~L~~~Gv~~l~~P 112 (191)
T cd07250 66 GKRKSQIQEFL-EYYGGAGVQHIALATDDIFATVAALRARGVEFLPIP 112 (191)
T ss_pred CCCccHHHHHH-HHhCCCceeEEEEECCCHHHHHHHHHHcCCeeccCc
Confidence 11110000000 001124889999999999999999999999998776
No 84
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=99.30 E-value=2.3e-11 Score=84.62 Aligned_cols=130 Identities=24% Similarity=0.336 Sum_probs=73.4
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCc---eEEEeeccCCCCCCCCCCccceeeecCCC-cEEEEeecCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMK---FSLYFLGYEDTASAPADPVDRTVWTFGKP-ATIELTHNWG 103 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~l~~~~~ 103 (185)
+++|++|.|+|+++|++||+++||+++.......... ....+....... ...+...+. ...+......
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 73 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDTVNEADDGGGYHLLFLDGDGGP--------GELLAFFGFEGRAGTGFVGD 73 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeecccccCCceEEEEEeccCCCCc--------ccceeecccccccccccccc
Confidence 6899999999999999999999999999875422211 112222211000 000000000 0000000000
Q ss_pred CCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 104 TESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
. .. ....+ ..+..|+++.+++ +......+...|..+..... ...+..+|++||||+.||+++
T Consensus 74 ~----~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~dp~g~~~e~~~ 138 (138)
T COG0346 74 V----AL-GVPGG---DLGLGHLAFEVDDEAFGDAALAFLDPDGVRIELGEP-GRGGVHVYFRDPDGILIELAT 138 (138)
T ss_pred e----EE-eecCc---hhccCceeEecccccccceEEEeeCCCCCEEEeecC-CCcceEEEEECCCCcEEEeeC
Confidence 0 00 00000 0246799999998 66666667777888765443 333347999999999999974
No 85
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=99.29 E-value=5.2e-11 Score=82.28 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=76.9
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.-++|+|+|+++|++||.. |||+......... ...+.-.+ ...+.|.....=.
T Consensus 3 ~mIFvNLPVkDL~~S~~Fy~a-lGfk~Npq~sde~---a~~mi~~~-------------------ni~vMLL~~~~fq-- 57 (133)
T COG3607 3 QMIFVNLPVKDLEASKAFYTA-LGFKFNPQFSDED---AACMIISD-------------------NIFVMLLEEARFQ-- 57 (133)
T ss_pred eEEEEecchhhHHHHHHHHHH-hCcccCCCccccc---ceeEEEec-------------------cEEEEEeccHHhh--
Confidence 566899999999999999976 9998887643222 12222221 1222222110000
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeC---CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVD---DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~---dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.+..-.........-..|||.++ +++++.++..+.|.+...++.+....+..-|.|||||.||++--
T Consensus 58 -~F~~~~i~dt~~s~evli~ls~~s~eevd~~v~ka~eaGGk~~~~~~d~gfMYg~~fqDpDGh~wE~l~m 127 (133)
T COG3607 58 -TFTKRQIADTTKSREVLISLSAGSREEVDELVDKALEAGGKPANEPQDEGFMYGRSFQDPDGHVWEFLWM 127 (133)
T ss_pred -hhcccccccccCCceEEEEeccCcHHHHHHHHHHHHHcCCCCCCCccccccccceeeeCCCCCeEEEEEe
Confidence 00000001111123357888887 49999999999999998888776555556679999999999754
No 86
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.21 E-value=2.8e-10 Score=94.18 Aligned_cols=104 Identities=18% Similarity=0.376 Sum_probs=69.2
Q ss_pred eeEEEEEEEeC--ChHHHHHHHHHhcCCEEeeeeecCC--CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 029933 27 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPE--MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 102 (185)
Q Consensus 27 ~~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 102 (185)
.+++|++|.|. |+++++.||+++|||++..+..... ..+....+..+ .+...++|..+.
T Consensus 157 ~~iDHv~i~V~~~dl~~~~~fY~~~lGf~~~~~~~~~~~~~~~~s~~~~~~-----------------~g~~~i~L~ep~ 219 (353)
T TIGR01263 157 IAIDHLVGNVYRGQMEPWAEFYEKIFGFREIRSFDIKTEYSALNSIVMASP-----------------DGKVKIPLNEPA 219 (353)
T ss_pred EEeeeeEcccCCccHHHHHHHHHHHhCCceeeEEEeccCCccEEEEEEECC-----------------CCcEEEEEeccC
Confidence 36999999999 9999999999999999887644221 11111112211 124567776432
Q ss_pred CCCCCCC---CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecC
Q 029933 103 GTESDPD---FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 151 (185)
Q Consensus 103 ~~~~~~~---~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~ 151 (185)
....... +.....| .|++||||.|+|+++++++|+++|+++...|
T Consensus 220 ~~~~~s~i~~fl~~~~g----~Gv~HiAf~vdDi~~~~~~l~~~Gv~~l~~P 267 (353)
T TIGR01263 220 SGKDKSQIEEFLEFYNG----AGVQHIALNTDDIVRTVRALRARGVEFLDTP 267 (353)
T ss_pred CCCCCCHHHHHHHHcCC----CCccEEEEEcCCHHHHHHHHHHcCCccCcCC
Confidence 2111111 1011122 3889999999999999999999999999766
No 87
>KOG2943 consensus Predicted glyoxalase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=7.6e-11 Score=90.09 Aligned_cols=121 Identities=27% Similarity=0.437 Sum_probs=89.2
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
.+.++.|.|.|+++|++||+++||+++.+.. ......++++++. +..+||....+...
T Consensus 149 pv~~V~l~VgdL~ks~kyw~~~lgM~ileke----ek~t~~~mgYgd~-----------------q~~LElt~~~~~id- 206 (299)
T KOG2943|consen 149 PVLQVMLNVGDLQKSIKYWEKLLGMKILEKE----EKYTRARMGYGDE-----------------QCVLELTYNYDVID- 206 (299)
T ss_pred CeEEEEEEehhHHHHHHHHHHHhCcchhhhh----hhhhhhhhccCCc-----------------ceEEEEEeccCccc-
Confidence 4679999999999999999999999999862 2346677888764 78999988766532
Q ss_pred CCCCCCCCCCCCCCCceEEEEEe--CCHHHHHHHHHhcCCEEeecC----CCCccc-eEEEEECCCCcEEEEeecCcccc
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITV--DDVYKACERFERLGVEFAKKP----DGGKLK-GVAFIKDPDDYWIEIFDLKTIGK 180 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v--~dv~~~~~~l~~~G~~~~~~~----~~~~~~-~~~~~~DPdG~~iEl~~~~~~~~ 180 (185)
+. .++..|+|.+ +++..+.+.++..+..+..+. .++.-. ..+.+.||||+.|.++....+++
T Consensus 207 -----~~------kg~griafaip~d~~~~l~e~iK~~n~~i~~~lttl~tPgka~vqvvil~DPDgheicfVdde~F~~ 275 (299)
T KOG2943|consen 207 -----RA------KGFGRIAFAIPTDDLPKLQEAIKSANGTILTPLTTLDTPGKATVQVVILADPDGHEICFVDDEGFRK 275 (299)
T ss_pred -----cc------ccceeEEEeccccccccHHHHHHHhccccccceeeccCCCcceeEEEEEECCCCceEEEeccHHHHH
Confidence 21 2556666666 477788888888866665443 233222 36778999999999999887776
Q ss_pred c
Q 029933 181 I 181 (185)
Q Consensus 181 ~ 181 (185)
+
T Consensus 276 l 276 (299)
T KOG2943|consen 276 L 276 (299)
T ss_pred H
Confidence 4
No 88
>cd06588 PhnB_like Escherichia coli PhnB and similar proteins; the E. coli phnB gene is found next to an operon involved in the cleavage of carbon-phosphorus bonds in unactivated alkylphosphonates. The Escherichia coli phnB gene is found next to an operon of fourteen genes (phnC-to-phnP) related to the cleavage of carbon-phosphorus (C-P) bonds in unactivated alkylphosphonates, supporting bacterial growth on alkylphosphonates as the sole phosphorus source. It was originally considered part of that operon. PhnB appears to play no direct catalytic role in the usage of alkylphosphonate. Although many of the proteins in this family have been annotated as 3-demethylubiquinone-9 3-methyltransferase enzymes by automatic annotation programs, the experimental evidence for this assignment is lacking. In Escherichia coli, the gene coding 3-demethylubiquinone-9 3-methyltransferase enzyme is ubiG, which belongs to the AdoMet-MTase protein family. PhnB-like proteins adopt a structural fold similar to
Probab=99.16 E-value=2.8e-09 Score=75.59 Aligned_cols=111 Identities=12% Similarity=0.042 Sum_probs=69.7
Q ss_pred EEEEe-CChHHHHHHHHHhcCCEEeeeeecCC----------CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEee
Q 029933 32 TMFRI-KDPKVSLDFYSRVLGMSLLKRLDFPE----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 100 (185)
Q Consensus 32 ~~l~v-~D~e~s~~FY~~~LG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 100 (185)
..|.+ .|.+++++||+++||+++........ ..+....+.. ++..+.+..
T Consensus 3 p~L~~~~~~~eAi~FY~~~fg~~~~~~~~~~~~~~~~~~~~~~~i~ha~l~i-------------------~g~~l~~~d 63 (128)
T cd06588 3 PYLWFNGNAEEALEFYQSVFGGEITSLTRYGEGPPPDPEEPEGKVMHAELTI-------------------GGQRLMASD 63 (128)
T ss_pred eEEeeCCCHHHHHHHHHHHhCCEeEEEEEcCCCCCCCCCCcCCcEEEEEEEE-------------------CCEEEEEEc
Confidence 45667 89999999999999999987654221 1111222222 123444432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCc-cceEEEEECCCCcEEEEe
Q 029933 101 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGK-LKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~-~~~~~~~~DPdG~~iEl~ 173 (185)
.... . . . ......++++.|+| +++++++|++.| ++..++.... +.+.++++||+|+.|+|.
T Consensus 64 ~~~~-~--~---~-----~~~~~~~l~i~~~~~e~v~~~~~~l~~~g-~~~~~~~~~~~g~~~~~v~Dp~G~~W~i~ 128 (128)
T cd06588 64 GGPG-F--P---F-----TFGNGISLSVECDSEEEADRLFEALSEGG-TVLMPLQKTFWSPLFGWVTDRFGVSWQIN 128 (128)
T ss_pred CCCC-C--C---C-----CCCCCEEEEEECCCHHHHHHHHHHHhcCC-eEeccchhcCcccccEEEECCCCCEEEeC
Confidence 2111 0 0 0 01133589999986 778889987766 7777765533 345788999999999973
No 89
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase. This protein oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic (see PubMed:8000039). In some bacterial species, this enzyme has been studied as a hemolysin.
Probab=99.14 E-value=1.6e-09 Score=89.64 Aligned_cols=124 Identities=19% Similarity=0.153 Sum_probs=77.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
.++|+.|.|+|++++++||++.|||++........... ...+.. +...++|........
T Consensus 2 ~i~hi~~~V~D~~~a~~~y~~~LGf~~~~~~~~~~~~~-~~~~~~-------------------G~~~l~L~~~~~~~s- 60 (353)
T TIGR01263 2 GFDFVEFYVGDAKQAAYYYFTRFGFEKVAKETGHREKA-SHVLRQ-------------------GQINFVLTAPYSSDS- 60 (353)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCcEEEEeecCCcee-EEEEEe-------------------CCEEEEEecCCCCCc-
Confidence 68999999999999999999999999887622112111 122221 145677754432211
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC--ccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~ 175 (185)
....+. ...+.+..||||.|+|++++++++.++|+++..+|... ..-...-+.-++|..+=++++
T Consensus 61 -~~~~~~--~~hg~gv~~iaf~V~Dv~~a~~~l~~~Ga~~v~~p~~~~~g~~~~~~i~~~g~~~~~~i~~ 127 (353)
T TIGR01263 61 -PAADFA--AKHGDGVKDVAFRVDDAAAAFEAAVERGAEPVQAPVELDEGAVTLATIKGIGDVVHTLVDR 127 (353)
T ss_pred -hHHHHH--HhCCCceEEEEEEECCHHHHHHHHHHCCCEeccCCccCCCCeEEEEEEECcCCCEEEEEcC
Confidence 000010 01123788999999999999999999999998876542 111122234455555555543
No 90
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=99.01 E-value=1.1e-09 Score=91.35 Aligned_cols=106 Identities=12% Similarity=0.269 Sum_probs=71.4
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCC-----ceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEM-----KFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 102 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 102 (185)
+|+|+++.|.+++++..||+++|||+........+. ++....+..++ +...++|..+.
T Consensus 180 ~IDHi~iaV~~ld~a~~fY~~vlGf~~~~~~d~~~i~~~~sgl~S~vl~sp~-----------------g~v~ipLnEP~ 242 (398)
T PLN02875 180 RLDHAVGNVPNLLPAVNYIAGFTGFHEFAEFTAEDVGTVDSGLNSMVLASNN-----------------EMVLLPLNEPT 242 (398)
T ss_pred eeCcceechhhHHHHHHHHHHhcCCeeeeeeccccccccccceEEEEEEcCC-----------------CcEEEEeccCC
Confidence 799999999999999999999999988865432221 12333333322 24577776653
Q ss_pred CC-CCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhc----CCEEeecC
Q 029933 103 GT-ESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERL----GVEFAKKP 151 (185)
Q Consensus 103 ~~-~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~----G~~~~~~~ 151 (185)
.. ..+.....+-.. .+..|++||||.|+||.++.++|+++ |++++..|
T Consensus 243 ~~~~~~SqI~eFL~~-~~G~GIQHIAl~tdDI~~av~~Lra~~~~~Gv~fL~~P 295 (398)
T PLN02875 243 FGTKRKSQIQTYLEH-NEGPGLQHLALKSDDIFGTLREMRARSHIGGFEFMPPP 295 (398)
T ss_pred CCCCCcChHHHHHHh-cCCCCeeEEEeecCCHHHHHHHHHhccccCCeecCCCC
Confidence 21 111111111111 12249999999999999999999999 99999854
No 91
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=98.99 E-value=4.8e-09 Score=85.10 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=70.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
++.||+|+|+|+++|++||+++|++.. +. +... ..+ ++ ..+.+..... +
T Consensus 247 ~~IfVNLpV~DL~rS~~FYt~LF~~n~-Fs----de~a-~cm---~d-------------------tI~vMllt~~---D 295 (357)
T PRK01037 247 KTFSVVLEVQDLRRAKKFYSKMFGLEC-WD----GDKL-FLL---GK-------------------TSLYLQQTKA---E 295 (357)
T ss_pred ceEEEEeeeCCHHHHHHHHHHHhCCCC-CC----CCcc-ccc---cC-------------------cEEEEEecCC---C
Confidence 677999999999999999999999875 33 2111 111 11 1222211111 1
Q ss_pred CCCCCCCCCCCCCCCceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 108 PDFKGYHNGNSEPRGFGHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 108 ~~~~~~~~~~~~~~g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.. ...-..+|+.+++ +|+++++..++|.....++.+...+ --|.|||||.||++-.
T Consensus 296 ~~----------~~~evLl~Ls~~Sre~VD~lv~~A~aaGG~~~~~~~D~Gf~--rsf~D~DGH~WEi~~~ 354 (357)
T PRK01037 296 KK----------NRGTTTLSLELECEHDFVRFLRRWEMLGGELGEQADGHFPL--RLVFDLDGHIWVVSCV 354 (357)
T ss_pred CC----------CcceEEEEeccCCHHHHHHHHHHHHHcCCCCCCCcccccCc--ceeECCCCCEEEEEEE
Confidence 10 0133578999984 8999999999999776777665542 3569999999999854
No 92
>COG2764 PhnB Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=6.3e-08 Score=69.24 Aligned_cols=118 Identities=19% Similarity=0.178 Sum_probs=80.1
Q ss_pred EEEEeC-ChHHHHHHHHHhcCCEEeeeeecCC----------CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEee
Q 029933 32 TMFRIK-DPKVSLDFYSRVLGMSLLKRLDFPE----------MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTH 100 (185)
Q Consensus 32 ~~l~v~-D~e~s~~FY~~~LG~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 100 (185)
.-|.++ |-+++++||+++||.+........+ ......-+..+ ...|.+..
T Consensus 4 PYl~f~gn~~~Al~fY~~vFgae~~~~~~~~d~~~~~~~~~~~~i~HA~l~i~-------------------g~~im~sd 64 (136)
T COG2764 4 PYLFFNGNAREALAFYKEVFGAEELKRVPFGDMPSSAGEPPGGRIMHAELRIG-------------------GSTIMLSD 64 (136)
T ss_pred eEEEECCCHHHHHHHHHHHhCceEEEEEEcCccCccccccccCceEEEEEEEC-------------------CEEEEEec
Confidence 346678 9999999999999999988876655 23333333332 23344432
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccc-eEEEEECCCCcEEEEeecCc
Q 029933 101 NWGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~~~~ 177 (185)
...... ...+ .+.-..|.+.++|++++++++.+.|+++..++.+..++ +...++||.|+.|-|-....
T Consensus 65 ~~~~~~------~~~~---~~~s~~l~~~~~d~da~f~~a~~aGa~v~mpl~~~fwG~r~G~v~D~fGv~W~l~~~~~ 133 (136)
T COG2764 65 AFPDMG------ATEG---GGTSLSLDLYVEDVDAVFERAAAAGATVVMPLEDTFWGDRYGQVTDPFGVVWMLNTPVE 133 (136)
T ss_pred CCCccC------cccC---CCeeEEEEEEehHHHHHHHHHHhcCCeEEecchhcCcccceEEEECCCCCEEEEecCcc
Confidence 211111 1111 11335677888899999999999999999988765443 56679999999999977554
No 93
>PF14506 CppA_N: CppA N-terminal; PDB: 3E0R_D.
Probab=98.63 E-value=1.7e-06 Score=59.79 Aligned_cols=119 Identities=19% Similarity=0.307 Sum_probs=66.4
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCCC
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDPD 109 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~ 109 (185)
.+-+|+|.|-+..++||++.|||++..+.. .++.++... +...+.|-..++...
T Consensus 2 ~~PvlRVnnR~~ni~FY~~~LGfkll~EEn------a~a~lg~~~-----------------~~erlvlEESP~~rt--- 55 (125)
T PF14506_consen 2 IIPVLRVNNRDLNIDFYQKTLGFKLLSEEN------ALAILGDQQ-----------------KEERLVLEESPSMRT--- 55 (125)
T ss_dssp EEEEEEESSHHHHHHHHTTTT--EEEEEET------TEEEEE-TT-------------------EEEEEEE--TTT----
T ss_pred cCceEEEcCHHHhHHHHHhccCcEEeeccc------cEEEecCCC-----------------CceEEEEecCCcccc---
Confidence 467899999999999999999999998732 245555421 134455544332210
Q ss_pred CCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCccccc
Q 029933 110 FKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 181 (185)
Q Consensus 110 ~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~~ 181 (185)
..-.++.-+.+|.+.|++.++. +.|.++|.++.. ...+..++.|-+.+|+|+.|.|..-.+..++
T Consensus 56 -----r~V~G~KKl~~ivIkv~~~~EI-e~LLar~~~~~~-l~kg~~gyAfe~vSPEgd~~llhaEdd~~~L 120 (125)
T PF14506_consen 56 -----RAVEGPKKLNRIVIKVPNPKEI-EALLARGAQYDR-LYKGKNGYAFEAVSPEGDRFLLHAEDDISDL 120 (125)
T ss_dssp -----B--SSS-SEEEEEEEESSHHHH-HHHHHC-S--SE-EEE-SSSEEEEEE-TT--EEEEE--S-GGG-
T ss_pred -----ccccCcceeeEEEEEcCCHHHH-HHHHhcccccce-eEEcCCceEEEEECCCCCEEEEEEcCCHhHc
Confidence 0112345678999999986665 556677766332 2224445567788999999999887665543
No 94
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=98.45 E-value=2e-06 Score=67.45 Aligned_cols=33 Identities=24% Similarity=0.522 Sum_probs=30.6
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
.+..|.||.|.|.|++++.+||+++|||++..+
T Consensus 165 ~~t~IGHvHL~v~~l~eA~~fY~~~LG~~~~~~ 197 (265)
T COG2514 165 AGTIIGHVHLKVADLEEAEQFYEDVLGLEVTAR 197 (265)
T ss_pred CCcEEeEEEEEeCCHHHHHHHHHHhcCCeeeec
Confidence 345899999999999999999999999999987
No 95
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=98.44 E-value=4.3e-07 Score=73.45 Aligned_cols=106 Identities=20% Similarity=0.304 Sum_probs=67.5
Q ss_pred eeEEEEEEEeC--ChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 029933 27 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 104 (185)
Q Consensus 27 ~~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 104 (185)
..|+|++..|. +++....||+++|+|+.....+.++.. ....- +..--.++...+.|-...+.
T Consensus 166 ~~IDHl~~nv~~~~md~w~~FY~~if~~~~~~~fdi~~p~-tgl~S--------------ram~Sp~G~vrlplN~s~~~ 230 (363)
T COG3185 166 TAIDHLTHNVKAGQMDTWVLFYESLFGFREIQYFDIPGPI-TGLRS--------------RAMVSPCGKVRLPLNESADD 230 (363)
T ss_pred eeechhhhhcchhhHHHHHHHHHHHhCccceeeEeccCCc-ccEEE--------------eeEecCCCcEEeecccCCCc
Confidence 48999888774 999999999999999988776543321 11111 11111222334444222111
Q ss_pred CC-CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecC
Q 029933 105 ES-DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 151 (185)
Q Consensus 105 ~~-~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~ 151 (185)
.+ ..++.....|. |++||+|.++||-++.++|+++|+++...|
T Consensus 231 ~sqi~efl~~y~G~----GIQHIA~~T~dI~~tv~~lr~rG~~fl~ip 274 (363)
T COG3185 231 KSQIGEFLREYRGE----GIQHIAFGTDDIYATVAALRERGVKFLPIP 274 (363)
T ss_pred hhHHHHHHHHhCCC----cceEEEecccHHHHHHHHHHHcCCccCCCc
Confidence 11 11111123333 999999999999999999999999998866
No 96
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=98.29 E-value=5e-06 Score=62.07 Aligned_cols=98 Identities=14% Similarity=0.245 Sum_probs=53.1
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCCC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESDP 108 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~ 108 (185)
|+|+.+.|+|++++.++|++.|||.+.....-+..+..-..+.++ ...|||+.........
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f~-------------------~~YlEli~i~~~~~~~ 61 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPFG-------------------DGYLELIAIDPEAPAP 61 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE-S-------------------SSEEEEEEES-HHHST
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEeeC-------------------CceEEEEEeCCccccc
Confidence 689999999999999999889999988765544433333333322 3489998753222211
Q ss_pred CCCCCCCCC---CCCCCceEEEEEeCCHHHHHHHHHhcCCE
Q 029933 109 DFKGYHNGN---SEPRGFGHIGITVDDVYKACERFERLGVE 146 (185)
Q Consensus 109 ~~~~~~~~~---~~~~g~~hi~~~v~dv~~~~~~l~~~G~~ 146 (185)
... .-.+. ....|+..+|+.++|+++..++|++.|+.
T Consensus 62 ~~~-~~~~~~~~~~~~g~~~~~l~t~d~~~~~~~l~~~G~~ 101 (175)
T PF13468_consen 62 DRG-RWFGLDRLAGGEGLYGWALRTDDIEAVAARLRAAGLD 101 (175)
T ss_dssp GGG-T-TTTHHHHT--EEEEEEEE-S-HHHHHHHHHTTT-E
T ss_pred ccc-cceechhhcCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence 010 10000 12348899999999999999999999986
No 97
>PRK10148 hypothetical protein; Provisional
Probab=98.22 E-value=0.00023 Score=51.82 Aligned_cols=51 Identities=10% Similarity=-0.083 Sum_probs=39.5
Q ss_pred eEEEEEeCCHHH---HHHHHHhcCCEEeecCCCCccc-eEEEEECCCCcEEEEeec
Q 029933 124 GHIGITVDDVYK---ACERFERLGVEFAKKPDGGKLK-GVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 124 ~hi~~~v~dv~~---~~~~l~~~G~~~~~~~~~~~~~-~~~~~~DPdG~~iEl~~~ 175 (185)
.+|++.++|.++ ++++| +.|.++..++....++ +...++||.|+.|.|...
T Consensus 87 ~~l~l~~~d~ee~~~~~~aL-a~gg~v~mpl~~~~wg~~~g~v~D~fGi~W~l~~~ 141 (147)
T PRK10148 87 FTLVLDTQDVEEGKRWFDNL-AANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVV 141 (147)
T ss_pred EEEEEECCCHHHHHHHHHHh-hCCCEEEecchhcchhhccEEEECCCCCEEEEEec
Confidence 578888888777 55655 6899998887665444 467799999999999765
No 98
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=98.10 E-value=1.3e-05 Score=64.18 Aligned_cols=101 Identities=12% Similarity=0.245 Sum_probs=63.0
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecC--CCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFP--EMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGT 104 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~ 104 (185)
.+++|+.+.|.|...+..||+..|||++....... ...+.-+-+..+ ....-+.....+
T Consensus 16 l~f~Hi~F~vgna~q~A~~y~~~fGfep~A~~~letg~~~~~s~alr~g-------------------~~vFv~~s~~~p 76 (381)
T KOG0638|consen 16 LRFHHIEFWVGNAKQAARWYCSGFGFEPLAYRGLETGSREWASHALRQG-------------------KIVFVFNSAYNP 76 (381)
T ss_pred eeeeEEEEEecCcHHHHHHHHhhcCCcchhcccccccchHHHHHHhhcC-------------------CEEEEEecCCCC
Confidence 38999999999999999999999999988643211 111111111110 111111111111
Q ss_pred CCCCCCC--CCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecC
Q 029933 105 ESDPDFK--GYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKP 151 (185)
Q Consensus 105 ~~~~~~~--~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~ 151 (185)
.. +++- -...|. +.--+||.|+|++.+.+.+.++|+++..+|
T Consensus 77 ~~-~~~G~~l~~Hgd----gvkdvafeVeD~da~~~~~va~Ga~v~~~p 120 (381)
T KOG0638|consen 77 DN-SEYGDHLVKHGD----GVKDVAFEVEDADAIFQEAVANGAKVVRPP 120 (381)
T ss_pred Cc-hhhhhhhhhccc----chhceEEEecchHHHHHHHHHcCCcccCCc
Confidence 10 0000 012333 567899999999999999999999999887
No 99
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=98.05 E-value=0.00015 Score=60.92 Aligned_cols=131 Identities=16% Similarity=0.167 Sum_probs=78.1
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeeeeec-CC-CceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCC-
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDF-PE-MKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTE- 105 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~- 105 (185)
++||.++|.|.+++..||+..|||+.+..... .+ .....+.+..+ ...+-+.....+.
T Consensus 1 ~dhvef~v~da~~~~~~f~~~~GF~~~a~~~~~tg~~~~~s~~~r~g-------------------~i~fv~~~~~~~~~ 61 (398)
T PLN02875 1 FHHVEFWCGDATNTARRFSWGLGMPLVAKSDLTTGNTTYASYLLRSG-------------------DLVFLFTAPYSPKI 61 (398)
T ss_pred CeEEEEEcCCHHHHHHHHHHhcCCCeEeecCCCCCCcceEEEEEEeC-------------------CEEEEEeCCCCCcc
Confidence 58999999999999999999999988775431 11 11122222211 1222222221110
Q ss_pred -C--CCCCCCCCCC-----------CCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCC--c--cc--eEEEEECC
Q 029933 106 -S--DPDFKGYHNG-----------NSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGG--K--LK--GVAFIKDP 165 (185)
Q Consensus 106 -~--~~~~~~~~~~-----------~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~--~--~~--~~~~~~DP 165 (185)
. +...+++... ..-+.++--++|.|+|++++++++.++|++...+|... . .+ ...-+.-+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~a~~~~~~HG~gV~dvaf~V~Da~~a~~~A~~~Ga~~~~~~~~~~d~~~~g~~~~~~I~~~ 141 (398)
T PLN02875 62 GAGDDDPASTAPHPSFSSDAARRFFAKHGLAVRAVGVLVEDAEEAFRTSVAHGARPVLEPTELGDEASGGKAVIAEVELY 141 (398)
T ss_pred ccccccccccccccccCcHHHHHHHHHcCCeeeEEEEEECCHHHHHHHHHHCCCeeccCCccccccccCceEEEEEEEcc
Confidence 0 0000000000 00123677899999999999999999999998876432 1 11 23446777
Q ss_pred CCcEEEEeecCcc
Q 029933 166 DDYWIEIFDLKTI 178 (185)
Q Consensus 166 dG~~iEl~~~~~~ 178 (185)
+|..+-|+++..+
T Consensus 142 G~~~h~lVdr~~~ 154 (398)
T PLN02875 142 GDVVLRYVSYKGF 154 (398)
T ss_pred CCcEEEEEccCCC
Confidence 8888888876543
No 100
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=97.55 E-value=0.0035 Score=45.11 Aligned_cols=119 Identities=19% Similarity=0.224 Sum_probs=69.5
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTESD 107 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 107 (185)
.+.+|.+.|.|.+++..++ +.|||+.+.+.. .... ..|.+. ...+-|-.. +...
T Consensus 9 G~dFvEFa~~~~~~l~~~~-~~lGF~~~a~hr--sk~v-~l~rQG--------------------~I~~vln~e--p~s~ 62 (139)
T PF14696_consen 9 GFDFVEFAVPDAQALAQLF-TALGFQPVARHR--SKDV-TLYRQG--------------------DINFVLNSE--PDSF 62 (139)
T ss_dssp EEEEEEEE-SSTTSCHHHH-CCCCEEEECCEC--CCSE-EEEEET--------------------TEEEEEEEE--STSC
T ss_pred CeEEEEEecCCHHHHHHHH-HHhCcceEEecC--Ccce-EEEEeC--------------------CEEEEEeCC--Ccch
Confidence 6888999999988888888 469999887642 1122 222221 223333221 1110
Q ss_pred -CCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 108 -PDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 108 -~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
..+. ...|. +.--++|.|+|.++++++..++|.+....+.....-..--++-++|.++-|+++..
T Consensus 63 a~~~~-~~HG~----sv~aiafrV~Da~~A~~rA~~~GA~~~~~~~~~~e~~~paI~g~G~sl~yfVdr~~ 128 (139)
T PF14696_consen 63 AAEFA-AQHGP----SVCAIAFRVDDAAAAYERAVALGAEPVQEPTGPGELNIPAIRGIGGSLHYFVDRYG 128 (139)
T ss_dssp HHHHH-HHHSS----EEEEEEEEES-HHHHHHHHHHTT--EEEEEEETT-BEEEEEE-CCC-EEEEEE--S
T ss_pred HHHHH-HhcCC----EEEEEEEEeCCHHHHHHHHHHcCCcCcccCCCCCcEeeeeEEccCCCEEEEEecCC
Confidence 0000 01222 66789999999999999999999998877632222234567888999999988754
No 101
>KOG0638 consensus 4-hydroxyphenylpyruvate dioxygenase [Amino acid transport and metabolism]
Probab=96.75 E-value=0.00097 Score=53.64 Aligned_cols=131 Identities=18% Similarity=0.352 Sum_probs=80.0
Q ss_pred eeEEEEEEEeC--ChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecC-CCcEE--EEeec
Q 029933 27 YFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFG-KPATI--ELTHN 101 (185)
Q Consensus 27 ~~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l--~l~~~ 101 (185)
.+|+|+...+. .++.+.+||.+.|||.-.+..+.+... ..|.+. .+|... ....+ .|-.+
T Consensus 177 ~~iDH~vgn~p~~em~sa~~wy~~~l~Fhrfwsvdd~~v~--te~SaL-------------rs~vlan~~esi~mpinEp 241 (381)
T KOG0638|consen 177 NRIDHVVGNQPDGEMESALRWYEKCLGFHRFWSVDDSQVH--TEYSAL-------------RSIVLANYEESIKMPINEP 241 (381)
T ss_pred eehhhhhccCCcccchHHHHHHHHhhcccccccCCcchhh--hHHHHH-------------HHHHHhcCCccEEEeccCC
Confidence 47899999998 788999999999999887765432211 111111 111111 11222 22222
Q ss_pred C-CCCC---CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCC---------C--------cc----
Q 029933 102 W-GTES---DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDG---------G--------KL---- 156 (185)
Q Consensus 102 ~-~~~~---~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~---------~--------~~---- 156 (185)
. +... -.++..+..| .|++||++.++||-++.+.++++|++++..|.. . ..
T Consensus 242 ~~G~k~ksQIqeyv~y~gG----~GvQHiaL~tedIi~Ai~~lr~rG~eFLs~Ps~YYqnl~erl~~~~~~vked~~~l~ 317 (381)
T KOG0638|consen 242 APGKKKKSQIQEYVEYHGG----AGVQHIALNTEDIIEAIRGLRARGGEFLSPPSTYYQNLKERLSTSIRKVKEDIKLLE 317 (381)
T ss_pred CCCCccHHHHHHHHHhcCC----CceeeeeecchHHHHHHHHHHhcCCccccCCHHHHHhHHHHhhhhhhhhhccHHHHH
Confidence 1 1111 0112223444 399999999999999999999999999976621 0 00
Q ss_pred -ceEEEEECCCCcEEEEeecC
Q 029933 157 -KGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 157 -~~~~~~~DPdG~~iEl~~~~ 176 (185)
-....-.|-.|+++.|+.+.
T Consensus 318 el~ILvD~De~gyLLQIFTKp 338 (381)
T KOG0638|consen 318 ELGILVDFDENGYLLQIFTKP 338 (381)
T ss_pred HcCeEEecCCCcEEeeeeccc
Confidence 11344467779999998854
No 102
>PF15067 FAM124: FAM124 family
Probab=96.59 E-value=0.033 Score=43.15 Aligned_cols=110 Identities=15% Similarity=0.175 Sum_probs=63.1
Q ss_pred CCceeEEEEEEEeC--ChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeec
Q 029933 24 TNGYFMQQTMFRIK--DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 101 (185)
Q Consensus 24 ~~~~~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 101 (185)
.-|..+..++|+|+ |.+.+++||+-+|+-++..+.. + | ++|.-+... ...|.+.-.
T Consensus 124 H~G~EilRftly~~~~N~~d~vr~Yelil~~~~~~~k~--~--F-C~F~lys~~-----------------~~~iQlsLK 181 (236)
T PF15067_consen 124 HYGKEILRFTLYCSFDNYEDMVRFYELILQREPTQQKE--D--F-CFFTLYSQP-----------------GLDIQLSLK 181 (236)
T ss_pred eccccEEEEEEEecCCCHHHHHHHHHHHhccCcceeeC--C--c-EEEEEecCC-----------------CeEEEEEec
Confidence 33446777999998 9999999999999998866532 2 2 223222111 344555432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEE
Q 029933 102 WGTESDPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 172 (185)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl 172 (185)
.-+ +..+ +.+.-..-+.|.|.|+-+++--| -+.+....+ +. --+.|||||.|-+
T Consensus 182 ~lp---~~~~------p~p~esavLqF~V~~igqLvpLL-Pnpc~PIS~---~r----WqT~D~DGNkILL 235 (236)
T PF15067_consen 182 QLP---PGMS------PEPTESAVLQFRVEDIGQLVPLL-PNPCSPISE---TR----WQTEDYDGNKILL 235 (236)
T ss_pred cCC---CCCC------cccccceEEEEEecchhhhcccC-CCCcccccC---Cc----ceeeCCCCCEecc
Confidence 110 0111 11223367899999998875532 333321111 11 2469999999843
No 103
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=96.41 E-value=0.18 Score=35.05 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=28.0
Q ss_pred eEEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEe
Q 029933 124 GHIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 124 ~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~ 173 (185)
.+|++.+++ ++.++++|.+.|- +....-.+.|.-|..|.|+
T Consensus 73 ~sl~i~~~~~ee~~~~f~~Ls~gG~---------~~~~~G~v~DkFGv~Wqiv 116 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKLSEGGQ---------WFSRYGWVTDKFGVSWQIV 116 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHHHTTTE---------TCCEEEEEE-TTS-EEEEE
T ss_pred EEEEEEcCCHHHHHHHHHHHHcCCC---------ccceeEEEEeCCCCEEEeC
Confidence 688999997 5556777766665 2223467899999999885
No 104
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=96.40 E-value=0.0082 Score=40.93 Aligned_cols=56 Identities=27% Similarity=0.240 Sum_probs=40.0
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCEEeecCCC-CccceEEEEECCCC-cEEEEeecCccc
Q 029933 124 GHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDD-YWIEIFDLKTIG 179 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~-~~~~~~~~~~DPdG-~~iEl~~~~~~~ 179 (185)
+||+|.|+|++++.+.+.+ .|+........ ....+..++..++| ..|||+++....
T Consensus 1 dHv~i~V~Dl~~a~~~~~~~lG~~~~~~~~~~~~~v~~~~~~~~~~~~~iELi~p~~~~ 59 (109)
T PF13669_consen 1 DHVGIVVPDLDAAAAFYCDVLGFEPWERYRDEPQGVRVAFLYLGDGPVQIELIQPLDGD 59 (109)
T ss_dssp EEEEEEES-HHHHHHHHHHCTTHEEEEEEEEGCTTEEEEEEEETTETEEEEEEEESSTT
T ss_pred CEEEEEcCCHHHHHHHHHHhhCCcEEEEEecCCCCEEEEEEEeCCCcEEEEEEEeCCCC
Confidence 5999999999999999998 89876543221 22223566677777 789999977643
No 105
>PF14507 CppA_C: CppA C-terminal; PDB: 3E0R_D.
Probab=96.03 E-value=0.039 Score=37.32 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=12.9
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcC
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLG 51 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG 51 (185)
+.|.+..+.|.|.| +++++||+++||
T Consensus 2 s~F~~e~i~LNV~d-~~~~~fy~~~f~ 27 (101)
T PF14507_consen 2 SQFEFESIELNVPD-AKSQSFYQSIFG 27 (101)
T ss_dssp SSEEE-EEEEEE-T--T---S--H---
T ss_pred CceEEEEEEEeCCC-hhHHHHHHhccc
Confidence 35788899999999 889999999886
No 106
>KOG2944 consensus Glyoxalase [Carbohydrate transport and metabolism]
Probab=95.20 E-value=0.14 Score=37.36 Aligned_cols=61 Identities=16% Similarity=0.219 Sum_probs=40.6
Q ss_pred CCCCCCCCCC-----CCCCCceeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCce-EEEeeccCC
Q 029933 11 ANNPGLHTAR-----DEATNGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKF-SLYFLGYED 74 (185)
Q Consensus 11 ~~~~~~~~~~-----~~~~~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~-~~~~~~~~~ 74 (185)
+.+-|..+++ +.++.+..++||||.|+|+.++..-+++ +|.+...+.. +++. ..+|+..++
T Consensus 93 thn~Gtes~~~~~~~ngN~~prGfgHIci~V~di~sac~~lke-kGV~f~Kk~~--dGk~K~iaF~~dpD 159 (170)
T KOG2944|consen 93 THNWGTESPPDQAYLNGNKEPRGFGHICIEVDDINSACERLKE-KGVRFKKKLK--DGKMKPIAFLHDPD 159 (170)
T ss_pred ecCCCCCCCcchhhcCCCCCCCccceEEEEeCCHHHHHHHHHH-hCceeeecCC--CccccceeEEECCC
Confidence 3445555555 2345556899999999999999999977 8999555432 3333 445555443
No 107
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=94.97 E-value=0.25 Score=34.81 Aligned_cols=47 Identities=15% Similarity=0.255 Sum_probs=32.8
Q ss_pred eeEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCC
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 74 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 74 (185)
-.+.|+++.|+|++++.+-.++ .|.++.........+....++..++
T Consensus 86 ~g~~hia~~v~d~d~~~~~l~~-~G~~~~~~~~~~~~~~r~~~~~DPd 132 (142)
T cd08353 86 LGLRRVMFAVDDIDARVARLRK-HGAELVGEVVQYENSYRLCYIRGPE 132 (142)
T ss_pred CCceEEEEEeCCHHHHHHHHHH-CCCceeCCceecCCCeEEEEEECCC
Confidence 3688999999999999999977 7888765322122334556666554
No 108
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=94.27 E-value=0.32 Score=35.61 Aligned_cols=56 Identities=30% Similarity=0.501 Sum_probs=39.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCC-----C---C---------cc--ceEEEEECCCCcEEEEeecCc
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPD-----G---G---------KL--KGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~-----~---~---------~~--~~~~~~~DPdG~~iEl~~~~~ 177 (185)
++.||++.|.|+++..+...+ .|+++..++. + + .. -..+++..++|..||+++...
T Consensus 4 ~i~Hv~i~V~Dle~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ieL~~~~~ 79 (162)
T TIGR03645 4 TFSHIGISVPDLDAAVKFYTEVLGWYLIMPPTEIVEDDSAIGEMCTDVFGEGWGSFKIAHLSTGDRIGVELFEFKN 79 (162)
T ss_pred eEEEEEEEeCCHHHHHHHHHHhcCCEEEeccccccCCCCCCCchhhHHhCCCcceeeEEEEecCCCCcEEEEeccC
Confidence 679999999999999999976 7987753210 0 0 00 124566667788899999764
No 109
>cd08352 Glo_EDI_BRP_like_1 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=93.60 E-value=0.64 Score=31.34 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=37.7
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCC-CccceEEEEECCCCcEEEEeecC
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDG-GKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~-~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
+++||++.|+|++++.+.+.+ .|+.+...... ......+.+..+++..+|++...
T Consensus 3 ~~~hi~l~v~d~~~a~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 59 (125)
T cd08352 3 GIHHVAIICSDYEKSKEFYVEILGFKVIREVYRPERGSYKLDLLLNGGYQLELFSFP 59 (125)
T ss_pred ccceEEEEcCCHHHHHHHHHHhcCCEEeeeeecCCCCcEEEEEecCCCcEEEEEEcC
Confidence 678999999999999999974 79987654321 11112233445677788887644
No 110
>COG3185 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]
Probab=93.55 E-value=3.1 Score=34.45 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=64.2
Q ss_pred eEEEEEEEeCCh-HHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecCCCCC
Q 029933 28 FMQQTMFRIKDP-KVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNWGTES 106 (185)
Q Consensus 28 ~i~h~~l~v~D~-e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~ 106 (185)
.+.++.+.|.|. ++..+++ ..|||....+.... . ...|.+ ..+-++-+....+
T Consensus 22 GfeFvEf~~~d~~~~l~~l~-~~lGF~~~~~Hrsk--~-v~l~rQ----------------------Gdinlvvn~~~~s 75 (363)
T COG3185 22 GFEFVEFAVPDPQEALGALL-GQLGFTAVAKHRSK--A-VTLYRQ----------------------GDINLVVNAEPDS 75 (363)
T ss_pred ceeEEEEecCCHHHHHHHHH-HHhCcccccccccc--c-eeEEEe----------------------CCEEEEEcCCCcc
Confidence 677788889999 5555555 56999887653211 1 222322 2344443322211
Q ss_pred -CCCCCCCCCCCCCCCCceEEEEEeCCHHHHHHHHHhcCCEEeecCC----------CCccceEEEEECCC
Q 029933 107 -DPDFKGYHNGNSEPRGFGHIGITVDDVYKACERFERLGVEFAKKPD----------GGKLKGVAFIKDPD 166 (185)
Q Consensus 107 -~~~~~~~~~~~~~~~g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~----------~~~~~~~~~~~DPd 166 (185)
..++. ...| .+..-++|.|+|...++++..++|.+....+. .+.++...|+.|.+
T Consensus 76 ~a~~f~-~~Hg----ps~~a~a~~V~DA~~A~a~A~a~gA~~~~~~~g~~e~~ipai~giggsllyfvd~~ 141 (363)
T COG3185 76 FAAEFL-DKHG----PSACAMAFRVDDAEQALARALALGARTIDTEIGAGEVDIPAIRGIGGSLLYFVDRY 141 (363)
T ss_pred hhhHHH-HhcC----CchheeEEeeCCHHHHHHHHHHcCCccccCCCCCccccccceeccCCcEEEEeccC
Confidence 00110 0122 25568999999999999999999995544332 13345578888887
No 111
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=93.36 E-value=0.57 Score=31.74 Aligned_cols=56 Identities=18% Similarity=0.318 Sum_probs=38.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCC-Cc-cceEEEEECC---CCcEEEEeecCc
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDG-GK-LKGVAFIKDP---DDYWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~-~~-~~~~~~~~DP---dG~~iEl~~~~~ 177 (185)
++.||++.|+|+++..+.+.+ .|+++...... .. ....+++.+. +|..++|++...
T Consensus 1 ~i~hv~l~v~d~~~a~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~ 62 (126)
T cd08346 1 GLHHVTLITRDAQETVDFYTDVLGLRLVKKTVNQDDPGTYHLFFGDGLGSPGTLLTFFEWPD 62 (126)
T ss_pred CcccEEEEcCChhHhHHHHHHccCCEEeeeEeccCCCceEEEEEecCCCCCCCEEEEEecCC
Confidence 357999999999999999975 69987654321 11 1223455554 677899887644
No 112
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=92.60 E-value=0.72 Score=31.62 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=37.3
Q ss_pred CceEEEEEeCCHHHHHHHHHhc----CCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 122 GFGHIGITVDDVYKACERFERL----GVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~----G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
+++|+.+.|+|+++..+.+.+. |.++...... ...|+...++..|++.+...
T Consensus 1 ~i~Hv~i~v~d~~~~~~Fy~~~l~~~G~~~~~~~~~----~~~~~~~~~~~~i~l~~~~~ 56 (128)
T cd07242 1 GIHHVELTVRDLERSRAFYDWLLGLLGFEEVKEWED----GRSWRAGDGGTYLVLQQADG 56 (128)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhhcCCEEEEeecc----CceEEecCCceEEEEEeccc
Confidence 3589999999999999999776 9887765421 12344335667888887665
No 113
>cd07249 MMCE Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.
Probab=92.30 E-value=0.67 Score=31.52 Aligned_cols=53 Identities=28% Similarity=0.330 Sum_probs=37.3
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCEEeecCCCC--ccceEEEEECCCCcEEEEeecCc
Q 029933 124 GHIGITVDDVYKACERFER-LGVEFAKKPDGG--KLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~--~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
.||+|.|+|++++.+.+.. .|.......... .....+++. .+|..++|+++..
T Consensus 2 ~hv~l~v~d~~~~~~fy~~~lG~~~~~~~~~~~~~~~~~~~~~-~~~~~l~l~~~~~ 57 (128)
T cd07249 2 DHIGIAVPDLEAAIKFYRDVLGVGPWEEEEVPPEQGVRVAFLG-LGNVQIELIEPLD 57 (128)
T ss_pred cEEEEEeCCHHHHHHHHHHhhCCCCccccccCcccccEEEEEE-cCCEEEEEEEECC
Confidence 6999999999999999986 788876543321 111234544 4788899998654
No 114
>cd07245 Glo_EDI_BRP_like_9 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases.
Probab=91.37 E-value=0.96 Score=29.66 Aligned_cols=54 Identities=17% Similarity=0.197 Sum_probs=37.1
Q ss_pred ceEEEEEeCCHHHHHHHHH-hcCCEEeecCCCCccceEEEEECCCCcEEEEeecCcc
Q 029933 123 FGHIGITVDDVYKACERFE-RLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTI 178 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~-~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~ 178 (185)
++||++.|+|++++.+.+. -.|..+...+.... ...++...++..++|+.....
T Consensus 1 i~Hi~l~v~d~~~~~~FY~~~lG~~~~~~~~~~~--~~~~~~~~~~~~i~l~~~~~~ 55 (114)
T cd07245 1 LDHVALRVPDLEASRAFYTDVLGLEEGPRPPFLF--PGAWLYAGDGPQLHLIEEDPP 55 (114)
T ss_pred CCeEEEecCCHHHHHHHHHHccCCcccCcCCCCC--CceEEEeCCCcEEEEEecCCC
Confidence 3699999999999999886 66887765543221 224555455567888876553
No 115
>PRK11478 putative lyase; Provisional
Probab=91.33 E-value=2.6 Score=28.75 Aligned_cols=28 Identities=7% Similarity=0.114 Sum_probs=23.5
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~ 56 (185)
.+.|+++.|.|++++.+-..+ .|.++..
T Consensus 75 g~~hi~f~v~d~~~~~~~l~~-~G~~~~~ 102 (129)
T PRK11478 75 GLRHLAFSVDDIDAAVAHLES-HNVKCEA 102 (129)
T ss_pred ceeEEEEEeCCHHHHHHHHHH-cCCeeec
Confidence 578999999999999888766 7988754
No 116
>PF13468 Glyoxalase_3: Glyoxalase-like domain; PDB: 3P8A_B.
Probab=91.22 E-value=0.21 Score=37.00 Aligned_cols=52 Identities=25% Similarity=0.438 Sum_probs=28.3
Q ss_pred ceEEEEEeCCHHHHHHHH-HhcCCEEeecCCCCc---cceEEEEECCCCcEEEEeecCc
Q 029933 123 FGHIGITVDDVYKACERF-ERLGVEFAKKPDGGK---LKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l-~~~G~~~~~~~~~~~---~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
+.||.+.|+|++++.+++ ...|+.+........ ....++| +++ .|||+...+
T Consensus 1 lDH~v~~v~dl~~a~~~~~~~lGf~~~~gg~h~~~GT~N~li~f--~~~-YlEli~i~~ 56 (175)
T PF13468_consen 1 LDHLVIAVRDLDAAVERFEQRLGFTVTPGGEHPGWGTANALIPF--GDG-YLELIAIDP 56 (175)
T ss_dssp EEEEEEE-TTGGG----GGGS--S--EEEEE-TTT-EEEEEEE---SSS-EEEEEEES-
T ss_pred CCEEEEEcCCHHHHHHhhhhcceEeecCCCcCCCCccEEEEEee--CCc-eEEEEEeCC
Confidence 369999999999999999 888998875432222 2224454 567 999998644
No 117
>cd06587 Glo_EDI_BRP_like This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain clas
Probab=90.78 E-value=1.4 Score=28.46 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=39.4
Q ss_pred EEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeecCccc
Q 029933 125 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIG 179 (185)
Q Consensus 125 hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~ 179 (185)
||.+.|+|+++..+.+.+ .|.+....... .....+++.+. +..|+|.+..+..
T Consensus 1 Hi~i~~~d~~~~~~fy~~~lg~~~~~~~~~-~~~~~~~~~~~-~~~i~l~~~~~~~ 54 (112)
T cd06587 1 HVGLTVSDLEAAVAFYEEVLGFEVLFRNGN-GGAEFAVLGLG-GTRLELFEGDEPA 54 (112)
T ss_pred CcceeeCCHHHHHHHHHhccCCEEEEeecc-CCEEEEEEecC-CceEEEecCCCCC
Confidence 788999999999999997 89988776542 11234555654 7899999876643
No 118
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=90.73 E-value=1.1 Score=32.67 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=35.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEEC-CCCcEEEEeecC
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKD-PDDYWIEIFDLK 176 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~D-PdG~~iEl~~~~ 176 (185)
|++||++.|+|+++..+.+.+ .|.++..... ....++..+ .++..|++++..
T Consensus 1 gl~HI~i~V~Dle~s~~FY~~~LG~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~ 54 (157)
T cd08347 1 GLHGVTLTVRDPEATAAFLTDVLGFREVGEEG---DRVRLEEGGGGPGAVVDVLEEP 54 (157)
T ss_pred CcccEEEEeCCHHHHHHHHHHhcCCEEEeeeC---CEEEEEecCCCCCCEEEEEeCC
Confidence 468999999999999999976 5988765432 111222222 357899998853
No 119
>PLN02367 lactoylglutathione lyase
Probab=90.48 E-value=1.7 Score=34.01 Aligned_cols=54 Identities=15% Similarity=0.130 Sum_probs=38.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeec
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 101 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 101 (185)
.++|++|.|.|++++.+-.++ .|.++...... ......+|+..++ +..|||+..
T Consensus 169 G~~HIaf~VdDVdaa~erL~a-~Gv~~v~~P~~-g~~~riaFIkDPD------------------Gn~IEL~e~ 222 (233)
T PLN02367 169 GFGHIGITVDDVYKACERFEE-LGVEFVKKPND-GKMKGIAFIKDPD------------------GYWIEIFDL 222 (233)
T ss_pred CceEEEEEcCCHHHHHHHHHH-CCCEEEeCCcc-CCceEEEEEECCC------------------CCEEEEEec
Confidence 689999999999999999966 99988754321 1113455665544 568888765
No 120
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=90.39 E-value=2.2 Score=29.93 Aligned_cols=56 Identities=9% Similarity=-0.013 Sum_probs=39.8
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeecC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHNW 102 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~ 102 (185)
.+.|+++.|+|++++.+-.++ .|.+++............+++..++ +..++++...
T Consensus 69 g~~hia~~V~Dvda~~~~l~~-~G~~v~~~p~~~~~~~~~~~i~dp~------------------G~~ie~~~~~ 124 (136)
T cd08342 69 GVCDVAFRVDDAAAAYERAVA-RGAKPVQEPVEEPGELKIAAIKGYG------------------DSLHTLVDRK 124 (136)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-cCCeEccCceecCCeEEEEEEeccC------------------CcEEEEEecC
Confidence 578999999999998888865 7998876543323344566666554 5688887643
No 121
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=90.21 E-value=1.8 Score=28.66 Aligned_cols=52 Identities=19% Similarity=0.142 Sum_probs=35.1
Q ss_pred EEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCC--cEEEEeecC
Q 029933 125 HIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDD--YWIEIFDLK 176 (185)
Q Consensus 125 hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG--~~iEl~~~~ 176 (185)
|+++.|.|++++.+.+.+ .|.++............+++.++++ ..|++.+..
T Consensus 1 Hv~l~v~d~~~~~~fY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 55 (119)
T cd07263 1 LVSLYVDDQDKALAFYTEKLGFEVREDVPMGGGFRWVTVAPPGSPETSLVLAPPA 55 (119)
T ss_pred CceEEeCCHHHHHHHHHhccCeEEEEeeccCCCcEEEEEeCCCCCeeEEEEeCCC
Confidence 789999999999999986 8998876543111223455666654 456665543
No 122
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=89.68 E-value=2.3 Score=28.76 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=30.7
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEe
Q 029933 124 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIF 173 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~ 173 (185)
.||.+.|+|+++..+.....|.++....... ..+.+..++|..|.+.
T Consensus 2 ~~i~l~V~D~~~a~~FY~~LGf~~~~~~~~~---~~~~~~~~~~~~l~l~ 48 (122)
T cd07235 2 DAVGIVVADMAKSLDFYRRLGFDFPEEADDE---PHVEAVLPGGVRLAWD 48 (122)
T ss_pred ceEEEEeccHHHHHHHHHHhCceecCCcCCC---CcEEEEeCCCEEEEEE
Confidence 6999999999999999988898764322111 1233444555555543
No 123
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.57 E-value=6.3 Score=28.59 Aligned_cols=28 Identities=11% Similarity=0.231 Sum_probs=23.8
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEee
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLK 56 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~ 56 (185)
++|++++|.+.+.+.+|.+.++.+-...
T Consensus 2 ~DHialR~n~~~~A~~w~~~l~~~G~ll 29 (149)
T cd07268 2 IDHIALRVNENQTAERWKEGLLQCGELL 29 (149)
T ss_pred CceEEEeeCCHHHHHHHHHHHHHhchhh
Confidence 5799999999999999999988774333
No 124
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=89.50 E-value=3.4 Score=27.06 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=31.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 73 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~ 73 (185)
...|++|.|.|+++..+...+ +|.++.........+....++..+
T Consensus 56 ~~~~~~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~g~~~~~~~DP 100 (108)
T PF12681_consen 56 GGFHLCFEVEDVDALYERLKE-LGAEIVTEPRDDPWGQRSFYFIDP 100 (108)
T ss_dssp SEEEEEEEESHHHHHHHHHHH-TTSEEEEEEEEETTSEEEEEEE-T
T ss_pred ceeEEEEEEcCHHHHHHHHHH-CCCeEeeCCEEcCCCeEEEEEECC
Confidence 677999999999999999976 899877654322223344455443
No 125
>cd07233 Glyoxalase_I Glyoxalase I catalyzes the isomerization of the hemithioacetal, formed by a 2-oxoaldehyde and glutathione, to S-D-lactoylglutathione. Glyoxalase I (also known as lactoylglutathione lyase; EC 4.4.1.5) is part of the glyoxalase system, a two-step system for detoxifying methylglyoxal, a side product of glycolysis. This system is responsible for the conversion of reactive, acyclic alpha-oxoaldehydes into the corresponding alpha-hydroxyacids and involves 2 enzymes, glyoxalase I and II. Glyoxalase I catalyses an intramolecular redox reaction of the hemithioacetal (formed from methylglyoxal and glutathione) to form the thioester, S-D-lactoylglutathione. This reaction involves the transfer of two hydrogen atoms from C1 to C2 of the methylglyoxal, and proceeds via an ene-diol intermediate. Glyoxalase I has a requirement for bound metal ions for catalysis. Eukaryotic glyoxalase I prefers the divalent cation zinc as cofactor, whereas Escherichia coil and other prokaryotic gly
Probab=89.36 E-value=2.5 Score=28.33 Aligned_cols=54 Identities=20% Similarity=0.280 Sum_probs=36.3
Q ss_pred ceEEEEEeCCHHHHHHHHHhc-CCEEeecCCCCc-cceEEEEECCC---CcEEEEeecC
Q 029933 123 FGHIGITVDDVYKACERFERL-GVEFAKKPDGGK-LKGVAFIKDPD---DYWIEIFDLK 176 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~~~-G~~~~~~~~~~~-~~~~~~~~DPd---G~~iEl~~~~ 176 (185)
+.|+++.|+|+++..+.+.+. |.++........ ....+++..++ +..+++++..
T Consensus 1 ~~hv~i~v~d~~~a~~fY~~~lG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~ 59 (121)
T cd07233 1 FLHTMLRVKDLEKSLDFYTDVLGMKLLRRKDFPEGKFTLVFLGYPDEDSEGVLELTYNW 59 (121)
T ss_pred CeeEEEEecCcHHHHHHHHhccCCeEEEEEecCCCceEEEEecCCCCCCccEEEEEecC
Confidence 369999999999999999865 998875432211 11234555443 5788887643
No 126
>cd07241 Glo_EDI_BRP_like_3 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=89.33 E-value=3.2 Score=27.86 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=34.9
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCEEeecC-CCCccceEEEEECCCCcEEEEeecC
Q 029933 123 FGHIGITVDDVYKACERFER-LGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~-~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
++||++.|+|+++..+.+.+ .|.+....- .........|+.-.+|..|++++..
T Consensus 2 ~~Hi~l~v~dl~~s~~FY~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 57 (125)
T cd07241 2 IEHVAIWTKDLERMKAFYVTYFGATSNEKYHNPRKGFESYFLSFDDGARLELMTRP 57 (125)
T ss_pred ceEEEEEecCHHHHHHHHHHHhCCEeeceEeCCCCCceEEEEecCCCcEEEEEcCc
Confidence 37999999999999998876 588764321 1111112234443467889998744
No 127
>PRK11700 hypothetical protein; Provisional
Probab=89.13 E-value=5.5 Score=30.05 Aligned_cols=32 Identities=9% Similarity=0.048 Sum_probs=26.6
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcCCEEee
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLK 56 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~ 56 (185)
..+.++|++++|.+.+.+.+|.+..+.+-...
T Consensus 36 ~~~~~DHialR~n~~~tAe~w~~~l~~~G~ll 67 (187)
T PRK11700 36 SQLEADHIALRCNQNETAERWRQGFLQCGELL 67 (187)
T ss_pred ccccCcEEEEeeCCHHHHHHHHHHHHHhchhh
Confidence 45678999999999999999999888774443
No 128
>cd07237 BphC1-RGP6_C_like C-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the C-terminal, catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its C-terminal repeat is represented in thi
Probab=89.13 E-value=2.8 Score=30.18 Aligned_cols=55 Identities=20% Similarity=0.350 Sum_probs=35.8
Q ss_pred CCceEEEEEeCCHHHHHHHHHh-cCCEEeecCCC----CccceEEEEE-CCCCcEEEEeec
Q 029933 121 RGFGHIGITVDDVYKACERFER-LGVEFAKKPDG----GKLKGVAFIK-DPDDYWIEIFDL 175 (185)
Q Consensus 121 ~g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~----~~~~~~~~~~-DPdG~~iEl~~~ 175 (185)
.++.||++.|+|+++..+.+.+ .|+++...... +.....+|+. +...+.|.+.+.
T Consensus 8 ~~l~Hi~l~v~Dl~~a~~FY~~~LGl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~ 68 (154)
T cd07237 8 QGLGHVVLATPDPDEAHAFYRDVLGFRLSDEIDIPLPPGPTARVTFLHCNGRHHSLALAEG 68 (154)
T ss_pred CccCEEEEEeCCHHHHHHHHHHccCCEEEEEEcccCCCCCcceEEEEEeCCCCCCEEEEcC
Confidence 4789999999999999999976 79987653211 1112234433 445566776543
No 129
>TIGR03081 metmalonyl_epim methylmalonyl-CoA epimerase. Members of this protein family are the enzyme methylmalonyl-CoA epimerase (EC 5.1.99.1), also called methylmalonyl-CoA racemase. This enzyme converts (2R)-methylmalonyl-CoA to (2S)-methylmalonyl-CoA, which is then a substrate for methylmalonyl-CoA mutase (TIGR00642). It is known in bacteria, archaea, and as a mitochondrial protein in animals. It is closely related to lactoylglutathione lyase (TIGR00068), which is also called glyoxylase I, and is also a homodimer.
Probab=88.75 E-value=2 Score=29.22 Aligned_cols=53 Identities=19% Similarity=0.293 Sum_probs=34.6
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 123 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+.|+++.|+|++++.+.++. .|.++............+++...++..|+|++.
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~ 55 (128)
T TIGR03081 2 IDHVGIAVPDLEEAAKLYEDVLGAHVSHIEEVPEQGVKVVFIALGNTKVELLEP 55 (128)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhCCCCccceeCCCCCcEEEEEecCCEEEEEEec
Confidence 47999999999999999974 698775432111111123333345678888874
No 130
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=88.70 E-value=1.8 Score=27.97 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCccccc
Q 029933 132 DVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGKI 181 (185)
Q Consensus 132 dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~~ 181 (185)
.+.++.+.+.+.|+++..--.+....+.+...|.||+.+||.-.....++
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~~~~g~yev~~~~~dG~~~ev~vD~~tG~V 79 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEFDDDGCYEVEARDKDGKKVEVYVDPATGEV 79 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEEcCCCEEEEEEEECCCCEEEEEEcCCCCeE
Confidence 67899999999999665432222323578899999999999876554443
No 131
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=88.62 E-value=5.5 Score=30.04 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=25.1
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
..+.++|++++|.+.+.+.+|-..++.+-....
T Consensus 31 ~~~~~DHialRvn~~~~A~~~~~~l~~~G~llS 63 (185)
T PF06185_consen 31 SQYEIDHIALRVNSNETAERWKQALLQCGELLS 63 (185)
T ss_dssp TT-EEEEEEEE-S-HHHHHHHHHHHTTTEEEEE
T ss_pred cccCCcEEEEecCCHHHHHHHHHHHHHhChhhh
Confidence 457899999999999999999999988754433
No 132
>PRK10291 glyoxalase I; Provisional
Probab=88.54 E-value=3.5 Score=28.36 Aligned_cols=55 Identities=11% Similarity=0.093 Sum_probs=36.9
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeee-ecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeec
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRL-DFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 101 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 101 (185)
.++|+++.|.|++++.+-.++ .|+++.... ..........++..++ +..++|+..
T Consensus 65 ~~~hlaf~V~d~~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~i~DPd------------------G~~iel~~~ 120 (129)
T PRK10291 65 AYGHIALSVDNAAEACEKIRQ-NGGNVTREAGPVKGGTTVIAFVEDPD------------------GYKIELIEE 120 (129)
T ss_pred CeeEEEEEeCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC------------------CCEEEEEEc
Confidence 688999999999998888866 888776431 1122222344555544 568888764
No 133
>PLN03042 Lactoylglutathione lyase; Provisional
Probab=87.50 E-value=3.2 Score=31.30 Aligned_cols=54 Identities=19% Similarity=0.191 Sum_probs=37.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCCCCCCCCCCccceeeecCCCcEEEEeec
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYEDTASAPADPVDRTVWTFGKPATIELTHN 101 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~ 101 (185)
.++|++|.|.|++++.+.+++ .|+++..... ........|+..++ +..++|+..
T Consensus 121 G~~Hlaf~V~Dvd~~~~~L~~-~Gv~v~~~p~-~~~~~~~~fi~DPd------------------G~~IEl~e~ 174 (185)
T PLN03042 121 GFGHIGITVDDVYKACERFEK-LGVEFVKKPD-DGKMKGLAFIKDPD------------------GYWIEIFDL 174 (185)
T ss_pred CccEEEEEcCCHHHHHHHHHH-CCCeEEeCCc-cCCceeEEEEECCC------------------CCEEEEEEC
Confidence 688999999999999999866 8998775422 11123345555444 568888754
No 134
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.82 E-value=4.8 Score=27.19 Aligned_cols=50 Identities=16% Similarity=0.291 Sum_probs=35.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCC-CcEEEEeecC
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDLK 176 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPd-G~~iEl~~~~ 176 (185)
.+.||.+.|+|+++..+.+.. .|.++..... ..+++...+ +..|.+.+..
T Consensus 2 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~~~-----~~~~l~~~~~~~~l~l~~~~ 53 (125)
T cd07255 2 RIGAVTLRVADLERSLAFYQDVLGLEVLERTD-----STAVLGTGGKRPLLVLEEDP 53 (125)
T ss_pred EEEEEEEEECCHHHHHHHHHhccCcEEEEcCC-----CEEEEecCCCeEEEEEEeCC
Confidence 357999999999999999986 7998876631 124445444 4667776654
No 135
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=86.73 E-value=7.3 Score=27.43 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=24.5
Q ss_pred CceEEEEEeCCHHHHHHHHH-hcCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFE-RLGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~-~~G~~~~~~ 150 (185)
.+.|+++.|.|++...+... ..|.++...
T Consensus 2 ~~~Hv~irV~DlerSi~FY~~vLG~~~~~~ 31 (127)
T cd08358 2 RALHFVFKVGNRNKTIKFYREVLGMKVLRH 31 (127)
T ss_pred ceEEEEEEeCCHHHHHHHHHHhcCCEEEee
Confidence 35799999999999999995 579987653
No 136
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=86.51 E-value=4.4 Score=27.05 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=34.7
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
++.||.+.|+|+++..+.+.+ .|.++......... +.+. .++..+++.+..
T Consensus 3 ~l~hi~l~v~d~~~s~~Fy~~~lG~~~~~~~~~~~~---~~~~-~~~~~~~l~~~~ 54 (125)
T cd07253 3 RIDHVVLTVADIEATLDFYTRVLGMEVVRFGEEVGR---KALR-FGSQKINLHPVG 54 (125)
T ss_pred ccceEEEEecCHHHHHHHHHHHhCceeecccccCCc---eEEE-eCCEEEEEecCC
Confidence 678999999999999999987 79988765432111 2223 233677776643
No 137
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=85.49 E-value=3.6 Score=27.55 Aligned_cols=53 Identities=32% Similarity=0.495 Sum_probs=35.1
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCC---CCccceEEEEECCCCcEEEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPD---GGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~---~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+++||++.|.|+++..+.+.. .|.++..... ........++...+ ..++++..
T Consensus 1 ~l~Hi~i~v~d~~~~~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 57 (128)
T PF00903_consen 1 GLDHIAIRVKDLEKAIDFYTDVLGFRLVEESDNDGEGGDLRIAFLRIGE-GHIELFLN 57 (128)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTSEEEEEEEEESTTEEEEEEEEESTS-SCEEEEEE
T ss_pred CeEEEEEEcCCHHHHHHHHHHHhCCcEEeeeccccccccccceeecccc-cceeeeee
Confidence 368999999999999999876 6998886553 11122244445444 45666553
No 138
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=85.31 E-value=6.8 Score=26.93 Aligned_cols=52 Identities=15% Similarity=0.295 Sum_probs=35.8
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECC--CCcEEEEeecCc
Q 029933 123 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFDLKT 177 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP--dG~~iEl~~~~~ 177 (185)
+.|+.+.|+|+++..+.+.+ .|.++...... ....|+... .+..+++++...
T Consensus 2 i~hv~l~v~D~~~s~~FY~~~lG~~~~~~~~~---~~~~~~~~~~~~~~~l~l~~~~~ 56 (134)
T cd08348 2 LSHVVLYVRDLEAMVRFYRDVLGFTVTDRGPL---GGLVFLSRDPDEHHQIALITGRP 56 (134)
T ss_pred eeEEEEEecCHHHHHHHHHHhcCCEEEeeccC---CcEEEEEecCCCceEEEEEecCC
Confidence 47999999999999999976 89987654422 123454433 346778776543
No 139
>cd07250 HPPD_C_like C-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HppD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of 4-hydroxyphenylpyruvate to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two,
Probab=85.14 E-value=4.2 Score=30.65 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=39.5
Q ss_pred CceEEEEEeC--CHHHHHHHHHh-cCCEEeecCCC-C--ccceEEEEECCCC-cEEEEeecCc
Q 029933 122 GFGHIGITVD--DVYKACERFER-LGVEFAKKPDG-G--KLKGVAFIKDPDD-YWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~--dv~~~~~~l~~-~G~~~~~~~~~-~--~~~~~~~~~DPdG-~~iEl~~~~~ 177 (185)
.+.||++.|+ |++++.+.+.+ .|.+....... . ......++..|+| ..|+|.++.+
T Consensus 3 ~iDHv~i~V~~~dl~~a~~fY~~~LGf~~~~~~~~~~~~~~~~s~~l~~~~g~i~l~L~~~~~ 65 (191)
T cd07250 3 RIDHVVGNVPDGEMDSWVDFYRKVLGFHRFWSFDIEDPYSGLRSRVLASPDGKIRIPLNEPAS 65 (191)
T ss_pred eeeEEEeecChhHHHHHHHHHHHhhCCceeeEEccCcCcccEEEEEEECCCCcEEEEEecCCC
Confidence 5689999999 99999999865 79977653321 1 1223566777764 6688888654
No 140
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=84.61 E-value=5.7 Score=26.52 Aligned_cols=29 Identities=21% Similarity=0.426 Sum_probs=24.9
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~~~ 150 (185)
++.||++.|+|+++..+.+...|.++...
T Consensus 2 ~i~hv~l~v~d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 2 SIDHFALEVPDLEVARRFYEAFGLDVREE 30 (112)
T ss_pred ceeEEEEecCCHHHHHHHHHHhCCcEEee
Confidence 56899999999999999998889887643
No 141
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=83.04 E-value=6.3 Score=27.39 Aligned_cols=30 Identities=10% Similarity=-0.058 Sum_probs=24.9
Q ss_pred eeEEEEEEEeCChHHHHHHHHHh--cCCEEee
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 56 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~--LG~~~~~ 56 (185)
..++|+++.|.|+++..+++..+ .|+++..
T Consensus 61 ~g~~hiaf~v~d~~~~~~~~~~l~~~G~~~~~ 92 (134)
T cd08360 61 AGFHHAAFEVGDIDEVMLGGNHMLRAGYQTGW 92 (134)
T ss_pred CcceEEEEEeCCHHHHHHHHHHHHHcCCcccc
Confidence 37899999999999999988777 5777653
No 142
>cd07252 BphC1-RGP6_N_like N-terminal domain of 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC, EC 1.13.11.39) 1 from Rhodococcus globerulus P6 (BphC1-RGP6) and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of BphC1-RGP6 and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of 2,3-dihydroxybiphenyl 1,2-dioxygenases. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC1-RGP6 has an internal duplication, it is a two-domain dioxygenase which forms octamers, and has Fe(II) at the catalytic site. Its N-
Probab=82.47 E-value=8 Score=26.19 Aligned_cols=29 Identities=17% Similarity=0.330 Sum_probs=24.5
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
++.|+++.|+|+++..+.+.. .|.+....
T Consensus 2 ~l~~v~l~v~Dl~~s~~FY~~~LG~~~~~~ 31 (120)
T cd07252 2 SLGYLGVESSDLDAWRRFATDVLGLQVGDR 31 (120)
T ss_pred cccEEEEEeCCHHHHHHHHHhccCceeccC
Confidence 457999999999999999976 69987654
No 143
>TIGR00068 glyox_I lactoylglutathione lyase. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice.
Probab=81.21 E-value=9.2 Score=27.14 Aligned_cols=46 Identities=11% Similarity=0.073 Sum_probs=31.3
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeeeee-cCCCceEEEeeccCC
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKRLD-FPEMKFSLYFLGYED 74 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~~~-~~~~~~~~~~~~~~~ 74 (185)
.+.|+++.|.|++++.+...+ .|.++..... .+.......|+..++
T Consensus 86 g~~hi~f~v~dld~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~~~DPd 132 (150)
T TIGR00068 86 GFGHIAIGVDDVYKACERVRA-LGGNVVREPGPVKGGTTVIAFVEDPD 132 (150)
T ss_pred ceeEEEEecCCHHHHHHHHHH-cCCccccCCcccCCCceEEEEEECCC
Confidence 578999999999999999976 8887664321 122233345555544
No 144
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=81.08 E-value=12 Score=24.64 Aligned_cols=28 Identities=11% Similarity=0.187 Sum_probs=22.8
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
..|+.+.|.|++++.+-+++ .|.++...
T Consensus 58 ~~~i~~~v~d~~~~~~~l~~-~G~~~~~~ 85 (112)
T cd07238 58 VPDLSIEVDDVDAALARAVA-AGFAIVYG 85 (112)
T ss_pred CCEEEEEeCCHHHHHHHHHh-cCCeEecC
Confidence 45899999999999888865 78877654
No 145
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=80.93 E-value=9.2 Score=25.53 Aligned_cols=26 Identities=12% Similarity=0.219 Sum_probs=21.6
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
|+++.|+|+++..+...+ .|.++...
T Consensus 69 ~~~~~v~did~~~~~l~~-~G~~~~~~ 94 (119)
T cd08359 69 ILNFEVDDVDAEYERLKA-EGLPIVLP 94 (119)
T ss_pred EEEEEECCHHHHHHHHHh-cCCCeeec
Confidence 899999999999999877 68776543
No 146
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.47 E-value=6.8 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCCEEeecCC--CCc-cceEEEEECCCCcEEE
Q 029933 133 VYKACERFERLGVEFAKKPD--GGK-LKGVAFIKDPDDYWIE 171 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~--~~~-~~~~~~~~DPdG~~iE 171 (185)
+..+.+.|...|+.+...-. .+. ....||+.|.+|+.++
T Consensus 15 L~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~ 56 (72)
T cd04895 15 LLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLT 56 (72)
T ss_pred HHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCC
Confidence 56677889999999876432 222 2348999999998874
No 147
>cd07257 THT_oxygenase_C The C-terminal domain of 2,4,5-Trihydroxytoluene (THT) oxygenase, which is an extradiol dioxygenease in the 2,4-dinitrotoluene (DNT) degradation pathway. This subfamily contains the C-terminal, catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=80.18 E-value=10 Score=27.16 Aligned_cols=31 Identities=10% Similarity=-0.060 Sum_probs=24.1
Q ss_pred eeEEEEEEEeCChHHHHHHHHHh--cCCEEeee
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLKR 57 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~--LG~~~~~~ 57 (185)
-.++|+++.|.|+++..+.+..+ .|+++...
T Consensus 66 ~g~~Hiaf~v~die~~~~~~~~L~~~Gv~v~~~ 98 (153)
T cd07257 66 SGVHHAAFEVHDFDAQGLGHDYLREKGYEHVWG 98 (153)
T ss_pred CceeEEEEEcCCHHHHHHHHHHHHHCCCcEeec
Confidence 37999999999999998666554 57776643
No 148
>cd07247 SgaA_N_like N-terminal domain of Streptomyces griseus SgaA (suppression of growth disturbance caused by A-factor at a high concentration under high osmolality during early growth phase), and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a strep
Probab=80.04 E-value=12 Score=24.66 Aligned_cols=51 Identities=16% Similarity=0.155 Sum_probs=32.4
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 124 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.|++|.|+|+++..+.+.. .|+++....... ...+++...++..+.++...
T Consensus 2 ~hi~l~v~d~~~s~~FY~~~lG~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 53 (114)
T cd07247 2 VWFELPTTDPERAKAFYGAVFGWTFEDMGDGG--GDYAVFSTGGGAVGGLMKAP 53 (114)
T ss_pred EEEEeeCCCHHHHHHHHHhccCceeeeccCCC--CceEEEEeCCccEEEEecCC
Confidence 5999999999999999986 499876544211 12233343333455555544
No 149
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=77.18 E-value=18 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.374 Sum_probs=34.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCC--ccce-EEEEECCCCcEEEEeecCc
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGG--KLKG-VAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~--~~~~-~~~~~DPdG~~iEl~~~~~ 177 (185)
++.|+.+.|+|+++..+.+.+ .|.+........ .... .+|. -.+..|++.+...
T Consensus 4 ~i~hv~l~V~dl~~s~~FY~~~lG~~~~~~~~~~~~~~~~~~~~~--~~~~~i~l~~~~~ 61 (131)
T cd08364 4 GLSHITLIVKDLNKTTAFLQNIFNAREVYSSGDKTFSLSKEKFFL--IGGLWIAIMEGDS 61 (131)
T ss_pred cEeEEEEEeCCHHHHHHHHHHHhCCeeEEecccccccccceeEEE--cCCeEEEEecCCC
Confidence 679999999999999998865 798765443211 1111 2332 2357888876543
No 150
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=77.10 E-value=13 Score=25.10 Aligned_cols=49 Identities=20% Similarity=0.365 Sum_probs=31.7
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 124 GHIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.++.+.|+|+++..+.++..|.+......... ...+.. .++..|.+.+.
T Consensus 2 ~~v~l~V~Dl~~s~~FY~~lGf~~~~~~~~~~--~~~~~~-~~~~~l~l~~~ 50 (124)
T cd09012 2 IFINLPVKDLEKSTAFYTALGFEFNPQFSDEK--AACMVI-SDNIFVMLLTE 50 (124)
T ss_pred EEEEeecCCHHHHHHHHHHCCCEEccccCCCC--eEEEEE-CCceEEEEEcH
Confidence 57889999999999999888887654221111 112322 34567777654
No 151
>cd08343 ED_TypeI_classII_C C-terminal domain of type I, class II extradiol dioxygenases; catalytic domain. This family contains the C-terminal, catalytic domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this family are
Probab=76.44 E-value=16 Score=25.10 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=32.8
Q ss_pred eEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCC-CcEEEEeec
Q 029933 124 GHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPD-DYWIEIFDL 175 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPd-G~~iEl~~~ 175 (185)
.||+|.|+|++++.+.+.+ .|+++.............|++..+ +..++++..
T Consensus 1 ~Hv~l~V~dl~~a~~Fy~~~lG~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 54 (131)
T cd08343 1 DHVVLRTPDVAATAAFYTEVLGFRVSDRVGDPGVDAAAFLRCDEDHHDLALFPG 54 (131)
T ss_pred CcEEEEcCCHHHHHHHHHhcCCCEEEEEEccCCceeEEEEEcCCCcceEEEEcC
Confidence 4999999999999998876 799876543211111234444433 446666654
No 152
>cd07258 PpCmtC_C C-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the C-terminal, catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as for other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=76.14 E-value=23 Score=25.04 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=22.9
Q ss_pred eeEEEEEEEeCChHHHHHHHHHh--cCCEEee
Q 029933 27 YFMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 56 (185)
Q Consensus 27 ~~i~h~~l~v~D~e~s~~FY~~~--LG~~~~~ 56 (185)
..++|+++.|.|++...++|..+ .|+++..
T Consensus 55 ~gl~Hiaf~v~~~~~v~~~~~~l~~~G~~~~~ 86 (141)
T cd07258 55 SHFHHVNFMVTDIDDIGKALYRIKAHDVKVVF 86 (141)
T ss_pred CceEEEEEECCCHHHHHHHHHHHHHCCCcEEe
Confidence 48999999999988777777665 4776554
No 153
>cd07262 Glo_EDI_BRP_like_19 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=74.91 E-value=16 Score=24.49 Aligned_cols=48 Identities=13% Similarity=0.101 Sum_probs=32.0
Q ss_pred eEEEEEeCCHHHHHHHHHh----cCCEEeecCCCCccceEEEEECC-CCcEEEEeec
Q 029933 124 GHIGITVDDVYKACERFER----LGVEFAKKPDGGKLKGVAFIKDP-DDYWIEIFDL 175 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~----~G~~~~~~~~~~~~~~~~~~~DP-dG~~iEl~~~ 175 (185)
.|+.+.|+|++++.+.+++ .|.+....... . .+++..+ .+..+.+...
T Consensus 2 ~hv~l~v~d~~~s~~FY~~~f~~lg~~~~~~~~~---~-~~~~~~~~~~~~~~l~~~ 54 (123)
T cd07262 2 DHVTLGVNDLERARAFYDAVLAPLGIKRVMEDGP---G-AVGYGKGGGGPDFWVTKP 54 (123)
T ss_pred cEEEEecCcHHHHHHHHHHHHhhcCceEEeecCC---c-eeEeccCCCCceEEEecc
Confidence 6999999999999988887 48887654311 1 1333444 3566666654
No 154
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=73.56 E-value=17 Score=23.90 Aligned_cols=48 Identities=17% Similarity=0.316 Sum_probs=33.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECC--CCcEEEEee
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDP--DDYWIEIFD 174 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DP--dG~~iEl~~ 174 (185)
.+.|+.|.|+|+++..+.+.+ .|.++..... ..+|++.. +...+.+..
T Consensus 2 ~l~hv~l~v~d~~~~~~FY~~~lg~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 52 (117)
T cd07240 2 RIAYAELEVPDLERALEFYTDVLGLTVLDRDA-----GSVYLRCSEDDHHSLVLTE 52 (117)
T ss_pred ceeEEEEecCCHHHHHHHHHhccCcEEEeecC-----CeEEEecCCCCcEEEEEEe
Confidence 357999999999999999987 7998876542 12455554 233455543
No 155
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.15 E-value=20 Score=23.94 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=21.3
Q ss_pred EEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 30 QQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 30 ~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
.|++|.|+|++++.+...+ .|.++...
T Consensus 73 ~~~~~~v~di~~~~~~l~~-~G~~~~~~ 99 (125)
T cd07264 73 FEIAFVTDDVAAAFARAVE-AGAVLVSE 99 (125)
T ss_pred EEEEEEcCCHHHHHHHHHH-cCCEeccC
Confidence 3899999999999888765 68876543
No 156
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.99 E-value=8.3 Score=22.81 Aligned_cols=26 Identities=31% Similarity=0.417 Sum_probs=22.7
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEE
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEF 147 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~ 147 (185)
+...+.|.+++.+.+.+.|+++|+++
T Consensus 39 ~~~~v~~~ve~~~~~~~~L~~~G~~v 64 (65)
T cd04882 39 GKALLIFRTEDIEKAIEVLQERGVEL 64 (65)
T ss_pred CeEEEEEEeCCHHHHHHHHHHCCceE
Confidence 44678899999999999999999876
No 157
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=72.33 E-value=17 Score=23.21 Aligned_cols=39 Identities=8% Similarity=0.136 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCEEeecCCC--Cc-cceEEEEECCCCcEEE
Q 029933 133 VYKACERFERLGVEFAKKPDG--GK-LKGVAFIKDPDDYWIE 171 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~~--~~-~~~~~~~~DPdG~~iE 171 (185)
+..+...|...|+.+...... +. ....||++|.+|..|.
T Consensus 15 L~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~ 56 (75)
T cd04897 15 LFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLS 56 (75)
T ss_pred HHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccC
Confidence 566778889999988765432 22 2248999999998774
No 158
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=72.10 E-value=23 Score=23.95 Aligned_cols=49 Identities=20% Similarity=0.273 Sum_probs=32.6
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.+.|+.+.|+|+++..+.+.. .|.+..... +. ..++...+|..+++...
T Consensus 4 ~~~hv~l~v~Dl~~s~~FY~~~lG~~~~~~~--~~---~~~~~~~~~~~l~~~~~ 53 (123)
T cd08351 4 TLNHTIVPARDREASAEFYAEILGLPWAKPF--GP---FAVVKLDNGVSLDFAQP 53 (123)
T ss_pred eEeEEEEEcCCHHHHHHHHHHhcCCEeeecc--CC---EEEEEcCCCcEEEEecC
Confidence 457999999999999998865 598776522 11 23333345666666553
No 159
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=71.57 E-value=25 Score=23.32 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~~~ 150 (185)
.+.|+.+.|+|+++..+.....|.+....
T Consensus 3 ~l~hv~l~v~Dl~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 3 DIAHVRFEHPDLDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEEccCCHHHHHHHHHHcCCEEEEe
Confidence 56899999999999999998889877543
No 160
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=71.32 E-value=25 Score=24.86 Aligned_cols=29 Identities=10% Similarity=-0.045 Sum_probs=22.1
Q ss_pred eEEEEEEEeCChHHHHHHHHHh--cCCEEee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~--LG~~~~~ 56 (185)
.++|+++.|.|+++..+.+..+ .|+++..
T Consensus 67 ~~~Hiaf~v~d~~~l~~~~~~l~~~Gv~i~~ 97 (143)
T cd07243 67 KLHHFSFFLESWEDVLKAGDIISMNDVSIDI 97 (143)
T ss_pred CceEEEEEcCCHHHHHHHHHHHHHcCCceEE
Confidence 6899999999999876665553 5777654
No 161
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=68.98 E-value=10 Score=25.57 Aligned_cols=29 Identities=24% Similarity=0.447 Sum_probs=25.0
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
.+.|+.|.|+|+++..+.+.+ .|.++...
T Consensus 4 ~l~hv~l~v~Dl~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLDLEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCCHHHHHHHHHhccCCEeeee
Confidence 668999999999999999975 79987654
No 162
>COG3865 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.73 E-value=42 Score=24.34 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred EEEEEeCC---HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEee
Q 029933 125 HIGITVDD---VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 125 hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~ 174 (185)
.+-+.|++ +|.+..+|...|.+ ...+.+++|-.|.-|.|+-
T Consensus 80 S~~v~~~~q~E~Drlwnal~~~g~e---------~~~cgW~kDKfGVSWQi~p 123 (151)
T COG3865 80 SFQVACDDQEEIDRLWNALSDNGGE---------AEACGWLKDKFGVSWQIVP 123 (151)
T ss_pred EEEEEcCCHHHHHHHHHHHhccCcc---------hhcceeEecccCcEEEEcH
Confidence 45566665 66677888887762 1124678999999998863
No 163
>cd08361 PpCmtC_N N-terminal domain of 2,3-dihydroxy-p-cumate-3,4-dioxygenase (PpCmtC). This subfamily contains the N-terminal, non-catalytic, domain of PpCmtC. 2,3-dihydroxy-p-cumate-3,4-dioxygenase (CmtC of Pseudomonas putida F1) is a dioxygenase involved in the eight-step catabolism pathway of p-cymene. CmtC acts upon the reaction intermediate 2,3-dihydroxy-p-cumate, yielding 2-hydroxy-3-carboxy-6-oxo-7-methylocta-2,4-dienoate. The CmtC belongs to the type I family of extradiol dioxygenases. Fe2+ was suggested as a cofactor, same as other enzymes in the family. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=68.61 E-value=32 Score=23.39 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=31.9
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEE-CCCCcEEEEee
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIK-DPDDYWIEIFD 174 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~-DPdG~~iEl~~ 174 (185)
.+.|+++.|+|+++..+.+.+ .|.++..... . .+|+. +.+++.+.+.+
T Consensus 6 ~l~~v~l~v~d~~~s~~FY~~vLG~~~~~~~~--~---~~~l~~~~~~~~i~l~~ 55 (124)
T cd08361 6 DIAYVRLGTRDLAGATRFATDILGLQVAERTA--K---ATYFRSDARDHTLVYIE 55 (124)
T ss_pred EeeEEEEeeCCHHHHHHHHHhccCceeccCCC--C---eEEEEcCCccEEEEEEe
Confidence 557999999999999999976 5998764421 1 23333 34455555543
No 164
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=68.57 E-value=28 Score=22.61 Aligned_cols=24 Identities=8% Similarity=0.033 Sum_probs=20.2
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCE
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMS 53 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~ 53 (185)
-.|+++.|.|+++..+-.++ +|.+
T Consensus 59 ~~~~~~~~~~~~~~~~~l~~-~G~~ 82 (112)
T cd08349 59 GGSVYIEVEDVDALYAELKA-KGAD 82 (112)
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCc
Confidence 44899999999999988866 7887
No 165
>cd09014 BphC-JF8_C_like C-terminal, catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. Th
Probab=68.42 E-value=25 Score=25.57 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=24.6
Q ss_pred CceEEEEEeCCHHHHHHHHH-hcCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFE-RLGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~-~~G~~~~~~ 150 (185)
++.||.|.|+|+++..+.+. -.|+++...
T Consensus 6 ~i~Hi~l~V~Dle~a~~FY~~vLG~~~~~~ 35 (166)
T cd09014 6 RLDHVNLLASDVDANRDFMEEVLGFRLREQ 35 (166)
T ss_pred eeeeEEEEcCCHHHHHHHHHHccCCEEEEE
Confidence 67899999999999999997 479887543
No 166
>cd08363 FosB FosB, a fosfomycin resistance protein, catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin. This subfamily family contains FosB, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosB catalyzes the Mg(II) dependent addition of L-cysteine to the epoxide ring of fosfomycin, (1R,2S)-epoxypropylphosphonic acid, rendering it inactive. FosB is evolutionarily related to glyoxalase I and type I extradiol dioxygenases
Probab=67.15 E-value=32 Score=23.71 Aligned_cols=48 Identities=10% Similarity=0.263 Sum_probs=32.0
Q ss_pred ceEEEEEeCCHHHHHHHHHh-cCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 123 FGHIGITVDDVYKACERFER-LGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 123 ~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
++|+++.|+|++++.+.+.. .|.++..... . ..|+. -.|..+++....
T Consensus 1 i~HV~l~V~Dl~~a~~FY~~~LG~~~~~~~~---~--~~~~~-~~~~~l~l~~~~ 49 (131)
T cd08363 1 INHMTFSVSNLDKSISFYKHVFMEKLLVLGE---K--TAYFT-IGGTWLALNEEP 49 (131)
T ss_pred CceEEEEECCHHHHHHHHHHhhCCEEeccCC---c--cceEe-eCceEEEEEccC
Confidence 36999999999999999886 5887754321 1 13333 246677765543
No 167
>cd07256 HPCD_C_class_II C-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD), which catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate; belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the C-terminal, catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of
Probab=66.37 E-value=31 Score=24.88 Aligned_cols=28 Identities=21% Similarity=0.413 Sum_probs=24.2
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEee
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAK 149 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~ 149 (185)
.+.||++.|+|+++..+.+.+ .|.++..
T Consensus 3 ~l~Hv~l~V~Dl~~s~~FY~~vLGl~~~~ 31 (161)
T cd07256 3 RLDHFNLRVPDVDAGLAYYRDELGFRVSE 31 (161)
T ss_pred eEEEEEEecCCHHHHHHHHHhccCCEEEE
Confidence 678999999999999999976 7988764
No 168
>PRK04101 fosfomycin resistance protein FosB; Provisional
Probab=64.99 E-value=42 Score=23.28 Aligned_cols=28 Identities=14% Similarity=0.109 Sum_probs=21.1
Q ss_pred eEEEEEEEeC--ChHHHHHHHHHhcCCEEee
Q 029933 28 FMQQTMFRIK--DPKVSLDFYSRVLGMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~ 56 (185)
.++|+++.+. |+++..+..++ .|.++..
T Consensus 63 ~~~hiaf~v~~~dv~~~~~~l~~-~G~~i~~ 92 (139)
T PRK04101 63 SYTHIAFSIEEEDFDHWYQRLKE-NDVNILP 92 (139)
T ss_pred CeeEEEEEecHHHHHHHHHHHHH-CCceEcC
Confidence 5789999887 77777777765 6887654
No 169
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=64.90 E-value=37 Score=22.36 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=21.5
Q ss_pred eEEEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
...|++|.|.|++++.+-..+ .|.++...
T Consensus 68 ~~~~~~~~v~d~~~~~~~l~~-~G~~~~~~ 96 (122)
T cd07246 68 TPVSLHLYVEDVDATFARAVA-AGATSVMP 96 (122)
T ss_pred ceEEEEEEeCCHHHHHHHHHH-CCCeEecC
Confidence 456999999999987666654 58876644
No 170
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=64.42 E-value=29 Score=24.55 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.4
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEee
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAK 149 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~ 149 (185)
.+.|+.+.|+|++++.+.+.+ .|+++..
T Consensus 4 ~l~Hv~i~V~Dle~s~~FY~~~LG~~~~~ 32 (144)
T cd07239 4 KISHVVLNSPDVDKTVAFYEDVLGFRVSD 32 (144)
T ss_pred eeeEEEEECCCHHHHHHHHHhcCCCEEEE
Confidence 568999999999999998854 7888754
No 171
>COG0346 GloA Lactoylglutathione lyase and related lyases [Amino acid transport and metabolism]
Probab=63.57 E-value=13 Score=24.49 Aligned_cols=30 Identities=23% Similarity=0.519 Sum_probs=25.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeecC
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKKP 151 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~~ 151 (185)
.+.|+++.|+|+++..+.+.+ .|.++....
T Consensus 2 ~l~hv~l~v~dl~~s~~FY~~~LG~~~~~~~ 32 (138)
T COG0346 2 GIHHVTLAVPDLEASIDFYTDVLGLRLVKDT 32 (138)
T ss_pred ceEEEEEeeCCHhHhHHHHHhhcCCeeeeec
Confidence 458999999999999999987 888886543
No 172
>cd09011 Glo_EDI_BRP_like_23 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=63.14 E-value=42 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.192 Sum_probs=20.7
Q ss_pred EEEEEEEeCChHHHHHHHHHhcC-CEEee
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLG-MSLLK 56 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG-~~~~~ 56 (185)
..|+++.|.|+++..+-.++ .| .++..
T Consensus 65 ~~~l~~~v~dvd~~~~~l~~-~g~~~~~~ 92 (120)
T cd09011 65 NFELYFEEEDFDAFLDKLKR-YDNIEYVH 92 (120)
T ss_pred ceEEEEEehhhHHHHHHHHh-cCCcEEec
Confidence 46899999999999998876 54 34443
No 173
>PRK06724 hypothetical protein; Provisional
Probab=62.76 E-value=49 Score=22.94 Aligned_cols=29 Identities=7% Similarity=0.095 Sum_probs=19.2
Q ss_pred eEEEEEEEeCChHHHHHHHHHh--cCCEEee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRV--LGMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~--LG~~~~~ 56 (185)
...|+++.|.+.+.-.++++.+ .|.++..
T Consensus 63 g~~h~af~v~~~~dvd~~~~~l~~~G~~~~~ 93 (128)
T PRK06724 63 GPRHICYQAINRKVVDEVAEFLSSTKIKIIR 93 (128)
T ss_pred CceeEEEecCChHHHHHHHHHHHHCCCEEec
Confidence 4679999995555555555554 6877653
No 174
>cd07266 HPCD_N_class_II N-terminal domain of 3,4-dihydroxyphenylacetate 2,3-dioxygenase (HPCD); belongs to the type I class II family of extradiol dioxygenases. This subfamily contains the N-terminal, non-catalytic, domain of HPCD. HPCD catalyses the second step in the degradation of 4-hydroxyphenylacetate to succinate and pyruvate. The aromatic ring of 4-hydroxyphenylacetate is opened by this dioxygenase to yield the 3,4-diol product, 2-hydroxy-5-carboxymethylmuconate semialdehyde. HPCD is a homotetramer and each monomer contains two structurally homologous barrel-shaped domains at the N- and C-terminus. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism. Most extradiol dioxygenases contain Fe(II) in their active site, but HPCD can be activated by either Mn(II) or Fe(II). These enzymes belong to the type I class II family of extradiol dioxygenases. The class III 3,4-dihydroxyphenylacetate 2,3-dioxygenases belong to a differ
Probab=62.63 E-value=17 Score=24.31 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=25.0
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
.+.|+.+.|+|+++..+.+.+ .|.++...
T Consensus 4 ~i~hi~l~v~d~~~~~~Fy~~~lG~~~~~~ 33 (121)
T cd07266 4 RLGHVELRVTDLEKSREFYVDVLGLVETEE 33 (121)
T ss_pred eeeEEEEEcCCHHHHHHHHHhccCCEEecc
Confidence 568999999999999999976 79887654
No 175
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.35 E-value=66 Score=24.00 Aligned_cols=29 Identities=10% Similarity=0.244 Sum_probs=22.8
Q ss_pred CceeEEEEEEEeCChHHHHHHHHHhcCCE
Q 029933 25 NGYFMQQTMFRIKDPKVSLDFYSRVLGMS 53 (185)
Q Consensus 25 ~~~~i~h~~l~v~D~e~s~~FY~~~LG~~ 53 (185)
..+.++|++|+|.+.+-+..|-+-.+.+-
T Consensus 36 t~~~~DHIaLRvh~~qtAk~wr~~~lqcG 64 (185)
T COG3102 36 TQYTADHIALRVHQEQTAKRWRRGLLQCG 64 (185)
T ss_pred cccccceeEEEeCcHHHHHHHHHHHHHHH
Confidence 44678999999998888888876666663
No 176
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=61.14 E-value=19 Score=24.22 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=24.8
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
++.|+.+.|+|++++.+.+.+ .|+++...
T Consensus 6 ~i~hv~l~v~dl~~a~~FY~~~lG~~~~~~ 35 (121)
T cd09013 6 HLAHVELLTPKPEESLWFFTDVLGLEETGR 35 (121)
T ss_pred EeeEEEEEeCCHHHHHHHHHhCcCCEEEee
Confidence 678999999999999999976 49887654
No 177
>PF02208 Sorb: Sorbin homologous domain; InterPro: IPR003127 Sorbin is an active peptide present in the digestive tract, where it has pro-absorptive and anti-secretory effects in different parts of the intestine, including the ability to decrease VIP (vasoactive intestinal peptide) and cholera toxin-induced secretion. It is expressed in some intestinal and pancreatic endocrine tumours in humans []. Sorbin-homology domains are found in adaptor proteins such as vinexin, CAP/ponsin and argBP2, which regulate various cellular functions, including cell adhesion, cytoskeletal organisation, and growth factor signalling []. In addition to the sorbin domain, these proteins contain three SH3 (src homology 3) domains. The sorbin homology domain mediates the interaction of vinexin and CAP with flotillin, which is crucial for the localisation of SH3-binding proteins to the lipid raft, a region of the plasma membrane rich in cholesterol and sphingolipids that acts to concentrate certain signalling molecules. The sorbin homology domain of adaptor proteins may mediate interactions with the lipid raft that are crucial to intracellular communication [].
Probab=58.73 E-value=2.7 Score=23.92 Aligned_cols=23 Identities=9% Similarity=0.304 Sum_probs=18.4
Q ss_pred EEEEEEEeCChHHHHHHHHHhcC
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLG 51 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG 51 (185)
+...+|++++.+..+.||+..|-
T Consensus 12 ~De~giP~~~vd~~kDWYktMFk 34 (47)
T PF02208_consen 12 VDESGIPLSNVDRPKDWYKTMFK 34 (47)
T ss_pred cccCCCccccccchhHHHHHHHH
Confidence 34567777999999999999763
No 178
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=57.79 E-value=24 Score=23.73 Aligned_cols=29 Identities=24% Similarity=0.525 Sum_probs=24.0
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
++.|+.+.|+|++++.+.+.+ .|.++...
T Consensus 1 ~i~hv~l~v~d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 1 GINHITLAVSDLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred CcceEEEEECCHHHHHHHHHHhcCCEEEEe
Confidence 357999999999999998875 79887654
No 179
>cd08345 Fosfomycin_RP Fosfomycin resistant protein; inhibits the biological function of fosfomycin. This family contains three types of fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. The three types of fosfomycin resistance proteins, employ different mechanisms to render fosfomycin [(1R,2S)-epoxypropylphosphonic acid] inactive. FosB catalyzes the addition of L-cysteine to the epoxide ring of fosfomycin. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. FosA catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. Catalytic activities of both FosX and FosA are Mn(II)-dependent, but FosB is activated by Mg(II). Fosfomycin resistant proteins are evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=55.71 E-value=34 Score=22.31 Aligned_cols=28 Identities=14% Similarity=0.208 Sum_probs=18.4
Q ss_pred eEEEEEEEeC--ChHHHHHHHHHhcCCEEee
Q 029933 28 FMQQTMFRIK--DPKVSLDFYSRVLGMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~--D~e~s~~FY~~~LG~~~~~ 56 (185)
.++|+++.|. |+++..+-.++ .|+++..
T Consensus 55 ~~~hiaf~v~~~d~~~~~~~l~~-~G~~~~~ 84 (113)
T cd08345 55 TYTHIAFQIQSEEFDEYTERLKA-LGVEMKP 84 (113)
T ss_pred CccEEEEEcCHHHHHHHHHHHHH-cCCccCC
Confidence 5689999995 45555555544 5777653
No 180
>cd07251 Glo_EDI_BRP_like_10 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=54.55 E-value=57 Score=21.39 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=13.4
Q ss_pred EEEEEeCChHHHHHHHHHh--cCCEEee
Q 029933 31 QTMFRIKDPKVSLDFYSRV--LGMSLLK 56 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~--LG~~~~~ 56 (185)
|+.+.+.+.+...++|+++ .|.++..
T Consensus 67 ~~~~~~~~~~d~~~~~~~l~~~G~~~~~ 94 (121)
T cd07251 67 TLAHNVRSEEEVDAVLARAAAAGATIVK 94 (121)
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCEEec
Confidence 4555554444444444444 5776654
No 181
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=54.27 E-value=74 Score=22.37 Aligned_cols=27 Identities=19% Similarity=0.362 Sum_probs=23.7
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCEEeec
Q 029933 124 GHIGITVDDVYKACERFERLGVEFAKK 150 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~~G~~~~~~ 150 (185)
..+-++|+|+|+....|+.+|+++...
T Consensus 110 Alli~r~ed~d~~~~aLed~gi~~~~~ 136 (142)
T COG4747 110 ALLIVRVEDIDRAIKALEDAGIKLIGM 136 (142)
T ss_pred EEEEEEhhHHHHHHHHHHHcCCeecCh
Confidence 467789999999999999999998753
No 182
>cd08357 Glo_EDI_BRP_like_18 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=54.01 E-value=60 Score=21.45 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=22.3
Q ss_pred EEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 125 HIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 125 hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
||.|.|+|+++..+.+.+ .|.++...
T Consensus 2 Hi~l~v~Dl~~s~~FY~~~lG~~~~~~ 28 (125)
T cd08357 2 HLAIPVRDLEAARAFYGDVLGCKEGRS 28 (125)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCEEeec
Confidence 899999999999999975 79887543
No 183
>cd07254 Glo_EDI_BRP_like_20 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and types I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=52.40 E-value=66 Score=21.27 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=22.0
Q ss_pred eEEEEEEEeCChHHHHHHHHHhc--CCEEee
Q 029933 28 FMQQTMFRIKDPKVSLDFYSRVL--GMSLLK 56 (185)
Q Consensus 28 ~i~h~~l~v~D~e~s~~FY~~~L--G~~~~~ 56 (185)
.+.|+++.|.|.+...++|..+. |.++..
T Consensus 58 ~~~h~~f~v~~~~dl~~~~~~l~~~G~~~~~ 88 (120)
T cd07254 58 GLNHLGVQVDSAEEVAEAKARAEAAGLPTFK 88 (120)
T ss_pred CeeEEEEEeCCHHHHHHHHHHHHHcCCeEEc
Confidence 67899999999777777776654 776654
No 184
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=52.02 E-value=27 Score=23.15 Aligned_cols=29 Identities=17% Similarity=0.376 Sum_probs=24.3
Q ss_pred CceEEEEEeCCHHHHHHHHHh-cCCEEeec
Q 029933 122 GFGHIGITVDDVYKACERFER-LGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~-~G~~~~~~ 150 (185)
++.|+.|.|+|+++..+.+.+ .|.++...
T Consensus 3 ~i~hv~l~v~d~~~s~~FY~~~lG~~~~~~ 32 (120)
T cd08362 3 ALRGVGLGVPDLAAAAAFYREVWGLSVVAE 32 (120)
T ss_pred eeeEEEEecCCHHHHHHHHHhCcCcEEEEe
Confidence 678999999999999988876 68876643
No 185
>cd08354 Glo_EDI_BRP_like_13 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=50.70 E-value=70 Score=21.02 Aligned_cols=48 Identities=29% Similarity=0.300 Sum_probs=32.9
Q ss_pred eEEEEEeCCHHHHHHHHH-hcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 124 GHIGITVDDVYKACERFE-RLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~-~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
.++.+.|.|+++..+.+. ..|.++...+. . ..+++.-.++..+.+++.
T Consensus 2 ~~~~l~v~d~~~s~~Fy~~~lG~~~~~~~~-~---~~~~l~~~~~~~~~l~~~ 50 (122)
T cd08354 2 LETALYVDDLEAAEAFYEDVLGLELMLKED-R---RLAFFWVGGRGMLLLFDP 50 (122)
T ss_pred eEEEEEeCCHHHHHHHHHhccCCEEeecCC-C---ceEEEEcCCCcEEEEEec
Confidence 588999999999999997 56998776422 1 124445444466666653
No 186
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.97 E-value=45 Score=20.07 Aligned_cols=26 Identities=19% Similarity=0.095 Sum_probs=19.9
Q ss_pred eEEEEEe--CCHHHHHHHHHhcCCEEee
Q 029933 124 GHIGITV--DDVYKACERFERLGVEFAK 149 (185)
Q Consensus 124 ~hi~~~v--~dv~~~~~~l~~~G~~~~~ 149 (185)
..+.|.+ ++.+.+.+.|+++|+++..
T Consensus 43 ~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 43 KILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred EEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 4455555 4888999999999998754
No 187
>PRK13498 chemoreceptor glutamine deamidase CheD; Provisional
Probab=47.55 E-value=43 Score=24.84 Aligned_cols=41 Identities=10% Similarity=-0.010 Sum_probs=31.1
Q ss_pred EeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 129 TVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 129 ~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
--.|++.+.+.|++.|+++..+-..+..++.++|.--+|.+
T Consensus 113 G~rNi~~a~~~L~~~gi~i~a~DvGG~~gR~i~f~~~tG~v 153 (167)
T PRK13498 113 ADKNIHAALALAEQNGLHLKAQDLGSTGHRSIIFDLWNGNV 153 (167)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 33589999999999999999876667677767655445644
No 188
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=47.30 E-value=23 Score=28.97 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=34.6
Q ss_pred EEEEEEe-----CChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccCC
Q 029933 30 QQTMFRI-----KDPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYED 74 (185)
Q Consensus 30 ~h~~l~v-----~D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~~ 74 (185)
.|++|++ ..++...+++. .||++++....++..+....++..++
T Consensus 36 dH~A~RT~~~~~~gl~~lar~F~-~lGy~~~G~Y~f~~kkl~a~~f~p~d 84 (302)
T PF07063_consen 36 DHGAFRTFGGPPYGLASLARIFA-ALGYEPVGYYDFPAKKLHATWFRPPD 84 (302)
T ss_dssp EEEEEEEECTSHCCHHHHHHHHH-TTTEEEEEEEEEGGGTEEEEEEEETS
T ss_pred eeeEEEecCCCchhHHHHHHHHH-HcCCEEcceecccccCceEEEecCCC
Confidence 8999994 47888888884 59999998888877777777777654
No 189
>cd07268 Glo_EDI_BRP_like_4 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=46.89 E-value=79 Score=23.01 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=19.3
Q ss_pred eEEEEEeCCH---HHHHHHHHhcCCEEeecC
Q 029933 124 GHIGITVDDV---YKACERFERLGVEFAKKP 151 (185)
Q Consensus 124 ~hi~~~v~dv---~~~~~~l~~~G~~~~~~~ 151 (185)
.||+++|++. +.+.+.|.+.|--++...
T Consensus 3 DHialR~n~~~~A~~w~~~l~~~G~llSen~ 33 (149)
T cd07268 3 DHIALRVNENQTAERWKEGLLQCGELLSENE 33 (149)
T ss_pred ceEEEeeCCHHHHHHHHHHHHHhchhhhccc
Confidence 6999999974 445666667776655433
No 190
>PF03975 CheD: CheD chemotactic sensory transduction; InterPro: IPR005659 CheD deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs). CheD-mediated MCP deamidation is required for productive communication of the conformational signals of the chemoreceptors to the cheA kinase []. CheC is a CheY-P phosphatase (CheY controls flagellar rotation and is activated by phosphorylation). The activity of CheC is enhanced by its interaction with CheD, forming a CheC-CheD heterodimer. It is suggested that CheC exerts its effect on MCP methylation in Bacillus subtilis by controlling the binding of CheD to the MCPs [].; GO: 0050568 protein-glutamine glutaminase activity, 0006935 chemotaxis; PDB: 2F9Z_D.
Probab=46.65 E-value=33 Score=23.54 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 170 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 170 (185)
.|++.+.+.|+++|+++..+-..+..++.++|.=-+|.++
T Consensus 64 rNv~~a~~~L~~~gi~I~a~dvGG~~~R~v~f~~~tG~v~ 103 (114)
T PF03975_consen 64 RNVEAARELLAEEGIPIVAEDVGGNFGRKVRFDPATGEVW 103 (114)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-SSS-EEEEEETTTTEEE
T ss_pred HHHHHHHHHHHHCCCcEEEeeCCCCCCcEEEEEcCCCEEE
Confidence 4799999999999999998766666677777654556443
No 191
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.45 E-value=41 Score=21.55 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=23.6
Q ss_pred CceEEEEEeCC----HHHHHHHHHhcCCEEeec
Q 029933 122 GFGHIGITVDD----VYKACERFERLGVEFAKK 150 (185)
Q Consensus 122 g~~hi~~~v~d----v~~~~~~l~~~G~~~~~~ 150 (185)
+...+.+.|++ ++++.+.|+++|+++...
T Consensus 40 ~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~ 72 (85)
T cd04906 40 AHIFVGVSVANGAEELAELLEDLKSAGYEVVDL 72 (85)
T ss_pred eEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEEC
Confidence 33567788888 999999999999988653
No 192
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=45.28 E-value=48 Score=24.43 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
.|++.+.+.|+++|+++..+-..+..++.++|.--+|.+
T Consensus 112 rNv~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v 150 (162)
T PRK13490 112 RNGKAVKKKLKELSIPILAEDIGGNKGRTMIFDTSDGKV 150 (162)
T ss_pred HHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 589999999999999999876667777767755444544
No 193
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=44.49 E-value=92 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=20.5
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
-.|+++.|.|++++.+-..+ .|.++...
T Consensus 69 ~~~~~~~v~d~d~~~~~l~~-~G~~v~~~ 96 (122)
T cd08355 69 TQGVYVVVDDVDAHYERARA-AGAEILRE 96 (122)
T ss_pred eEEEEEEECCHHHHHHHHHH-CCCEEeeC
Confidence 35899999999877665544 57777654
No 194
>PRK13495 chemoreceptor glutamine deamidase CheD; Provisional
Probab=44.48 E-value=52 Score=24.21 Aligned_cols=40 Identities=10% Similarity=0.168 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 170 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 170 (185)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|..+
T Consensus 105 rNi~~a~~~L~~~gI~i~a~dvGG~~gR~i~f~~~tG~v~ 144 (159)
T PRK13495 105 RNVEAVKKHLKDFGIKLVAEDTGGNRARSIEYNIETGKLL 144 (159)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 5899999999999999998766666777677654556443
No 195
>PRK13494 chemoreceptor glutamine deamidase CheD; Provisional
Probab=42.98 E-value=57 Score=24.13 Aligned_cols=39 Identities=10% Similarity=0.049 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|.+
T Consensus 114 rNv~~a~~~L~~~gI~i~a~DvGG~~gR~i~f~~~tG~v 152 (163)
T PRK13494 114 ENSEFAVNTLNKYGIPILAKDFDQSKSRKIFVFPENFKV 152 (163)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 589999999999999999876667777767765445644
No 196
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=42.45 E-value=63 Score=19.30 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.4
Q ss_pred EEEEEeCCHHHHHHHHHhcCCEEe
Q 029933 125 HIGITVDDVYKACERFERLGVEFA 148 (185)
Q Consensus 125 hi~~~v~dv~~~~~~l~~~G~~~~ 148 (185)
.+.+.++|.+.+.+.|+++|+++.
T Consensus 42 ~~rl~~~~~~~~~~~L~~~G~~v~ 65 (66)
T cd04908 42 ILRLIVSDPDKAKEALKEAGFAVK 65 (66)
T ss_pred EEEEEECCHHHHHHHHHHCCCEEE
Confidence 455667888899999999998863
No 197
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=41.45 E-value=32 Score=16.42 Aligned_cols=12 Identities=17% Similarity=0.166 Sum_probs=8.6
Q ss_pred EEEECCCCcEEE
Q 029933 160 AFIKDPDDYWIE 171 (185)
Q Consensus 160 ~~~~DPdG~~iE 171 (185)
..++|++|++|-
T Consensus 9 ~i~~D~~G~lWi 20 (24)
T PF07494_consen 9 SIYEDSDGNLWI 20 (24)
T ss_dssp EEEE-TTSCEEE
T ss_pred EEEEcCCcCEEE
Confidence 557999999874
No 198
>PRK13497 chemoreceptor glutamine deamidase CheD; Provisional
Probab=41.26 E-value=61 Score=24.48 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 170 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 170 (185)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|..+
T Consensus 112 rNi~~a~~~L~~~gI~i~a~DvGG~~gR~v~f~~~tG~v~ 151 (184)
T PRK13497 112 QNAAFAMQFLRDEGIPVVGSSTGGEHGRKLEYWPVSGRAR 151 (184)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCeEE
Confidence 5899999999999999998766677777677655556553
No 199
>PRK11700 hypothetical protein; Provisional
Probab=40.71 E-value=1e+02 Score=23.30 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=21.6
Q ss_pred CceEEEEEeCC---HHHHHHHHHhcCCEEeecCCCC
Q 029933 122 GFGHIGITVDD---VYKACERFERLGVEFAKKPDGG 154 (185)
Q Consensus 122 g~~hi~~~v~d---v~~~~~~l~~~G~~~~~~~~~~ 154 (185)
-..||+++|++ .+.+.+.|.+.|--++.....|
T Consensus 39 ~~DHialR~n~~~tAe~w~~~l~~~G~llSen~ING 74 (187)
T PRK11700 39 EADHIALRCNQNETAERWRQGFLQCGELLSENIING 74 (187)
T ss_pred cCcEEEEeeCCHHHHHHHHHHHHHhchhhhccccCC
Confidence 34799999997 4445666777776665433333
No 200
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.40 E-value=1.5e+02 Score=21.81 Aligned_cols=53 Identities=25% Similarity=0.360 Sum_probs=38.2
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEe--ecCC---------------CC----ccceEEEEECCCCcEEEEee
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFA--KKPD---------------GG----KLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~--~~~~---------------~~----~~~~~~~~~DPdG~~iEl~~ 174 (185)
+...|++.+|++........++|+++. ..+. .+ ...+..|+.|+||.+..++.
T Consensus 64 ~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 64 GAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred CCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 567899999998888887778887653 2110 01 12358899999999999884
No 201
>PRK13488 chemoreceptor glutamine deamidase CheD; Provisional
Probab=39.19 E-value=68 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=30.1
Q ss_pred eCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 130 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 130 v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
-.|++.+.+.|+++|+++..+-..+..++.++|.--+|..
T Consensus 106 ~rNi~~a~~~L~~~gi~i~a~dvGG~~gR~i~f~~~tG~v 145 (157)
T PRK13488 106 ERNIESAKETLKKLGIRIVAEDVGGDYGRTVKFDLKTGKV 145 (157)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEcCCCCCcEEEEECCCCEE
Confidence 3689999999999999998876666666666655444544
No 202
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=38.79 E-value=81 Score=20.19 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=15.8
Q ss_pred EeCChHHHHHHHHHhcCCEEeee
Q 029933 35 RIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 35 ~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
...+=+.|.++|++ |||+...+
T Consensus 61 v~~~N~~s~~ly~k-lGf~~~~~ 82 (86)
T PF08445_consen 61 VDADNEASIRLYEK-LGFREIEE 82 (86)
T ss_dssp EETT-HHHHHHHHH-CT-EEEEE
T ss_pred EECCCHHHHHHHHH-cCCEEEEE
Confidence 34577789999976 99998865
No 203
>PRK13491 chemoreceptor glutamine deamidase CheD; Provisional
Probab=38.24 E-value=71 Score=24.46 Aligned_cols=40 Identities=10% Similarity=-0.035 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWI 170 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~i 170 (185)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|.++
T Consensus 115 rNie~a~~~L~~~GI~ivaeDvGG~~gRkI~f~~~tG~v~ 154 (199)
T PRK13491 115 ANAAFARRYLRDEGIRCTAHSLGGNRARRIRFWPKTGRVQ 154 (199)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEEE
Confidence 4799999999999999998766666677666554456543
No 204
>COG5397 Uncharacterized conserved protein [Function unknown]
Probab=38.06 E-value=35 Score=27.58 Aligned_cols=51 Identities=24% Similarity=0.379 Sum_probs=34.1
Q ss_pred EEEEEeCC-HHHHHHHHHhcCCEEeecC-CCCccceEEEEECCCCcEEEEeecC
Q 029933 125 HIGITVDD-VYKACERFERLGVEFAKKP-DGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 125 hi~~~v~d-v~~~~~~l~~~G~~~~~~~-~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
.|...|+| +..+.+-|++....+...| +.+....+.| ..++|+.+|+..+.
T Consensus 160 aiS~evdDsl~~il~lLr~~D~sFrpvPh~~d~ak~~~f-qn~~~y~VefLTtn 212 (349)
T COG5397 160 AISREVDDSLPPILDLLRSVDPSFRPVPHRSDPAKSSAF-QNRDGYRVEFLTTN 212 (349)
T ss_pred hhhHHhcccccHHHHHHhccCcccccCCccCCCccceee-ecCCCeEEEEeccC
Confidence 34455554 6677777777777666666 3344444444 99999999999843
No 205
>PRK13493 chemoreceptor glutamine deamidase CheD; Provisional
Probab=37.77 E-value=70 Score=24.76 Aligned_cols=39 Identities=13% Similarity=0.033 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
.|++.+.+.|++.|+++..+-..+..++.++|.--+|.+
T Consensus 139 rNi~~a~~~L~~~gI~Iva~DvGG~~gRki~f~~~tG~v 177 (213)
T PRK13493 139 KNVEFVLEYAKREKLNVVAQDLGGAQPRKLLFDPQTGQA 177 (213)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 479999999999999999876666667766655445543
No 206
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.60 E-value=26 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHhcCCEEeeeeecCCCceEEEeeccC
Q 029933 38 DPKVSLDFYSRVLGMSLLKRLDFPEMKFSLYFLGYE 73 (185)
Q Consensus 38 D~e~s~~FY~~~LG~~~~~~~~~~~~~~~~~~~~~~ 73 (185)
|+.++..||++.||+++..-. +..+.++|....
T Consensus 146 ~~~e~a~wy~dyLGleie~~h---gevikfiFTnId 178 (246)
T KOG4657|consen 146 DIHEAASWYNDYLGLEIEAGH---GEVIKFIFTNID 178 (246)
T ss_pred ccHHHHHHHHHhcCceeeecc---CceEEEEEeccC
Confidence 678889999999999887642 223455666553
No 207
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=36.82 E-value=98 Score=20.44 Aligned_cols=32 Identities=9% Similarity=0.172 Sum_probs=26.5
Q ss_pred CCCCCCCceeEEEEEEEeCChHHHHHHHHHhc
Q 029933 19 ARDEATNGYFMQQTMFRIKDPKVSLDFYSRVL 50 (185)
Q Consensus 19 ~~~~~~~~~~i~h~~l~v~D~e~s~~FY~~~L 50 (185)
+.+++.++|.-..+.|.+.|.|+-...|+++-
T Consensus 50 ~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL~ 81 (90)
T COG2921 50 WKPSSKGNYLSVSITIRATNIEQVEALYRELR 81 (90)
T ss_pred eccCCCCceEEEEEEEEECCHHHHHHHHHHHh
Confidence 45566777888889999999999999999853
No 208
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=36.31 E-value=76 Score=24.31 Aligned_cols=41 Identities=0% Similarity=-0.165 Sum_probs=30.8
Q ss_pred EeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 129 TVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 129 ~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
--.|++.+.+.|++.|+++..+-..+..++.++|.--+|.+
T Consensus 125 G~rNi~~a~~~L~~~gI~iva~DvGG~~gR~v~f~~~tG~v 165 (201)
T PRK13487 125 GERNAEFVRDYLQTERIPIVAEDLLDIYPRKVYFFPTTGKV 165 (201)
T ss_pred hHHHHHHHHHHHHHcCCcEEEEECCCCCCcEEEEECCCCEE
Confidence 33589999999999999999876667677766655444544
No 209
>PF07063 DUF1338: Domain of unknown function (DUF1338); InterPro: IPR009770 This domain is found in a variety of bacterial and fungal hypothetical proteins of unknown function. The structure of this domain has been solved by structural genomics. The structure implies a zinc-binding function, so it is a putative metal hydrolase (information derived from TOPSAN for PDB:3iuz).; PDB: 3LHO_A 3IUZ_A 2RJB_C.
Probab=35.98 E-value=31 Score=28.17 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=23.0
Q ss_pred CceeEEEEEEEe------CChHHHHHHHHHhcCCEEe
Q 029933 25 NGYFMQQTMFRI------KDPKVSLDFYSRVLGMSLL 55 (185)
Q Consensus 25 ~~~~i~h~~l~v------~D~e~s~~FY~~~LG~~~~ 55 (185)
.|++++|+++.| .|+++..++.++ .|+...
T Consensus 181 ~G~~~NH~T~~v~~l~~~~dI~~v~~~l~~-~G~~~n 216 (302)
T PF07063_consen 181 HGYHINHFTPRVNRLKKFLDIDAVNAFLKE-RGIPMN 216 (302)
T ss_dssp HTCS-SEEEEETTT-TT-S-HHHHHHHHHH-TT--B-
T ss_pred cccccceeeceeecccccccHHHHHHHHHH-cCCCcc
Confidence 578999999999 999999999987 899888
No 210
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=35.28 E-value=17 Score=21.53 Aligned_cols=18 Identities=28% Similarity=0.539 Sum_probs=14.7
Q ss_pred EeCChHHHHHHHHHhcCC
Q 029933 35 RIKDPKVSLDFYSRVLGM 52 (185)
Q Consensus 35 ~v~D~e~s~~FY~~~LG~ 52 (185)
..+.+...++||++.|-|
T Consensus 36 ~~k~P~~vI~FYE~~l~~ 53 (54)
T cd00034 36 NVKCPLLVISFYEEHLTY 53 (54)
T ss_pred HhhCcHHHHHHHHHhccc
Confidence 346899999999998765
No 211
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=34.55 E-value=70 Score=25.65 Aligned_cols=44 Identities=11% Similarity=0.259 Sum_probs=26.5
Q ss_pred HHHHHHHHhcCCEEeecCCCCc------cceEEEEECCCCcEEEEeecCc
Q 029933 134 YKACERFERLGVEFAKKPDGGK------LKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 134 ~~~~~~l~~~G~~~~~~~~~~~------~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
++..+-+++.-+-+...|.+.. +...+|+.||+|..++.+-...
T Consensus 213 eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~ 262 (280)
T KOG2792|consen 213 EQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNY 262 (280)
T ss_pred HHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccC
Confidence 3344444455555555443311 1237899999999999887544
No 212
>COG1871 CheD Chemotaxis protein; stimulates methylation of MCP proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=34.32 E-value=1.1e+02 Score=22.71 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=31.1
Q ss_pred eCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 130 VDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 130 v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
-.|++.+.+.|+..|++++.+-..+..++.+||.=-+|-+
T Consensus 113 ~rNv~~~~~~L~~~~IpilaeD~Gg~~gR~i~F~p~tG~v 152 (164)
T COG1871 113 ERNVEFAKEFLKDEGIPILAEDTGGDSGRTIEFNPSTGRV 152 (164)
T ss_pred hHHHHHHHHHHHHcCCcEEEhhhCCCCCcEEEEecCCCcE
Confidence 3578999999999999999887777777777765444543
No 213
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=33.54 E-value=68 Score=22.73 Aligned_cols=53 Identities=13% Similarity=0.300 Sum_probs=36.0
Q ss_pred EEEEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCcccc
Q 029933 125 HIGITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKTIGK 180 (185)
Q Consensus 125 hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~~~~ 180 (185)
-|-|-|.|+++..+.+.+.|.++.....+... .+.+. -+...+-|++...++.
T Consensus 6 FvNLPVkDL~~S~~Fy~alGfk~Npq~sde~a--~~mi~-~~ni~vMLL~~~~fq~ 58 (133)
T COG3607 6 FVNLPVKDLEASKAFYTALGFKFNPQFSDEDA--ACMII-SDNIFVMLLEEARFQT 58 (133)
T ss_pred EEecchhhHHHHHHHHHHhCcccCCCcccccc--eeEEE-eccEEEEEeccHHhhh
Confidence 45677889999999999999998877654332 24433 3455556666655543
No 214
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=33.50 E-value=91 Score=24.52 Aligned_cols=39 Identities=3% Similarity=-0.178 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcE
Q 029933 131 DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~ 169 (185)
.|++.+.+.|+..|+++..+-..+..++.++|.--+|.+
T Consensus 125 RNieaa~~~L~~~gI~IvaeDvGG~~gRkV~f~~~TG~v 163 (233)
T PRK13489 125 RNADFVRRYLALERIRITAEDLQGVHPRKVAFMPRTGRA 163 (233)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCCCcEEEEECCCCEE
Confidence 489999999999999999876666777766655444544
No 215
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=33.09 E-value=74 Score=18.86 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 133 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
+++...+-..+|-.+......+ .+-..+|||.+|-|++...
T Consensus 6 ls~~ea~~l~~Gr~l~~~~~~g----~~aa~~pdG~lvAL~~~~g 46 (56)
T PF09142_consen 6 LSAEEARDLRHGRRLPAAGPPG----PVAAFAPDGRLVALLEERG 46 (56)
T ss_dssp --HHHHHHHHTT---B-----S-----EEEE-TTS-EEEEEEEET
T ss_pred CCHHHHHHHhCCCccCCCCCCc----eEEEECCCCcEEEEEEccC
Confidence 4444455567776655442222 2446789999999997654
No 216
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.96 E-value=76 Score=19.16 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=20.5
Q ss_pred CceEEEEEeC---CHHHHHHHHHhcCCEEe
Q 029933 122 GFGHIGITVD---DVYKACERFERLGVEFA 148 (185)
Q Consensus 122 g~~hi~~~v~---dv~~~~~~l~~~G~~~~ 148 (185)
+..++.+.+. +++++.+.|+++|+++.
T Consensus 38 ~~v~v~ie~~~~~~~~~i~~~L~~~G~~~~ 67 (68)
T cd04885 38 ARVLVGIQVPDREDLAELKERLEALGYPYV 67 (68)
T ss_pred eEEEEEEEeCCHHHHHHHHHHHHHcCCCcc
Confidence 3356777775 48889999999998753
No 217
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=32.70 E-value=1.8e+02 Score=20.45 Aligned_cols=53 Identities=26% Similarity=0.406 Sum_probs=32.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEe--ecCCC------Cc-------------cceEEEEECCCCcEEEEee
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFA--KKPDG------GK-------------LKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~--~~~~~------~~-------------~~~~~~~~DPdG~~iEl~~ 174 (185)
++.-|++.+++.+++.+.+++.|+.+. ..+.. +- .....|+.|++|.++..+.
T Consensus 64 ~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 137 (154)
T PRK09437 64 GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFD 137 (154)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEc
Confidence 455677777777777766776666442 22210 00 0134689999999998875
No 218
>PTZ00056 glutathione peroxidase; Provisional
Probab=32.53 E-value=2.2e+02 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=13.3
Q ss_pred EEEEECCCCcEEEEee
Q 029933 159 VAFIKDPDDYWIEIFD 174 (185)
Q Consensus 159 ~~~~~DPdG~~iEl~~ 174 (185)
..|+.|++|+++..+.
T Consensus 147 ~tflID~~G~iv~~~~ 162 (199)
T PTZ00056 147 GKFLVNKSGNVVAYFS 162 (199)
T ss_pred EEEEECCCCcEEEEeC
Confidence 4789999999997664
No 219
>smart00300 ChSh Chromo Shadow Domain.
Probab=32.25 E-value=30 Score=20.99 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.9
Q ss_pred eCChHHHHHHHHHhcCCE
Q 029933 36 IKDPKVSLDFYSRVLGMS 53 (185)
Q Consensus 36 v~D~e~s~~FY~~~LG~~ 53 (185)
.+.+...++||++.|-|+
T Consensus 43 ~k~P~~vI~FYE~~l~~~ 60 (61)
T smart00300 43 VKCPQKVIRFYESHLTFQ 60 (61)
T ss_pred HHChHHHHHHHHHhCccC
Confidence 468899999999988663
No 220
>PF06185 YecM: YecM protein; InterPro: IPR010393 This family consists of several bacterial YecM proteins of unknown function.; PDB: 1K4N_A.
Probab=31.67 E-value=94 Score=23.51 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=17.6
Q ss_pred CceEEEEEeCCH---HHHHHHHHhcCCEEee
Q 029933 122 GFGHIGITVDDV---YKACERFERLGVEFAK 149 (185)
Q Consensus 122 g~~hi~~~v~dv---~~~~~~l~~~G~~~~~ 149 (185)
-..|||++|++. +++.+.+.+.|--++.
T Consensus 34 ~~DHialRvn~~~~A~~~~~~l~~~G~llSe 64 (185)
T PF06185_consen 34 EIDHIALRVNSNETAERWKQALLQCGELLSE 64 (185)
T ss_dssp EEEEEEEE-S-HHHHHHHHHHHTTTEEEEEE
T ss_pred CCcEEEEecCCHHHHHHHHHHHHHhChhhhh
Confidence 447999999974 4456667777754444
No 221
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.13 E-value=1.5e+02 Score=18.79 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCEEeecCCC----Ccc-ceEEEEECCCCcEE
Q 029933 133 VYKACERFERLGVEFAKKPDG----GKL-KGVAFIKDPDDYWI 170 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~~----~~~-~~~~~~~DPdG~~i 170 (185)
+....+.+...|+.+...-.. +.. -..||+ |.+|..|
T Consensus 14 L~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl 55 (75)
T cd04896 14 LYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKI 55 (75)
T ss_pred HHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCcc
Confidence 556678888999988754322 222 237888 8888763
No 222
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=28.79 E-value=70 Score=25.08 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=17.5
Q ss_pred eEEEEECCCCcEEEEeecCcccccc
Q 029933 158 GVAFIKDPDDYWIEIFDLKTIGKIG 182 (185)
Q Consensus 158 ~~~~~~DPdG~~iEl~~~~~~~~~~ 182 (185)
...|..||.|+.+|.-...++-.++
T Consensus 124 p~LY~idpsG~~~e~~a~~~~~AiG 148 (236)
T cd03765 124 PRLFLIYPQGNFIEATPDTPFLQIG 148 (236)
T ss_pred CEEEEECCCCCEEeecCCCceeeeC
Confidence 4689999999999985443333343
No 223
>PF02952 Fucose_iso_C: L-fucose isomerase, C-terminal domain; InterPro: IPR015888 L-fucose isomerase (5.3.1.25 from EC) converts the aldose L-fucose into the corresponding ketose L-fuculose during the first step in fucose metabolism using Mn2+ as a cofactor. The enzyme is a hexamer, forming the largest structurally known ketol isomerase, and has no sequence or structural similarity with other ketol isomerases. The structure was determined by X-ray crystallography at 2.5 A resolution []. This entry represents the C-terminal domain of L-fucose isomerase.; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 1FUI_E 3A9R_A 3A9T_C 3A9S_C.
Probab=27.55 E-value=80 Score=22.26 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEEEEeCChHHHHHHHHHhcCCEEe
Q 029933 29 MQQTMFRIKDPKVSLDFYSRVLGMSLL 55 (185)
Q Consensus 29 i~h~~l~v~D~e~s~~FY~~~LG~~~~ 55 (185)
-||+++..-|..+..+-..++||++++
T Consensus 113 ~hH~~~~~G~~~~~l~~~~~~lgi~v~ 139 (142)
T PF02952_consen 113 AHHVALVYGDYAEELKELAKYLGIEVV 139 (142)
T ss_dssp SSEEEEEES--HHHHHHHHHHHT--EE
T ss_pred CCeEEEEcCcHHHHHHHHHHHcCCEEE
Confidence 479999999999999999999999876
No 224
>PRK03467 hypothetical protein; Provisional
Probab=26.88 E-value=2.5e+02 Score=20.32 Aligned_cols=47 Identities=6% Similarity=-0.048 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHhcCCEEeec--CCCCccceEEEEECCCCcEEEEeecCc
Q 029933 131 DDVYKACERFERLGVEFAKK--PDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 131 ~dv~~~~~~l~~~G~~~~~~--~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
+++....+.|+..-+--+.. ..+.+....||+.|+++..+-+++..+
T Consensus 5 ~~~~~I~~fl~~~hvltLa~~~~~~~w~A~cFY~fd~~~~~l~~~S~~~ 53 (144)
T PRK03467 5 DTLTAISRWLAKQHVVTLCVGQEGELWCANCFYVFDAQKVAFYLLTEEK 53 (144)
T ss_pred hHHHHHHHHHHhCcEEEEEEEcCCCcceEEEEEEEcCCCeEEEEEcCCC
Confidence 34566677777776644322 222334468899999999998887655
No 225
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=26.86 E-value=1.9e+02 Score=19.04 Aligned_cols=49 Identities=31% Similarity=0.434 Sum_probs=33.2
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCC--EEeecCCC-------Cc------cceEEEEECCCCcEE
Q 029933 122 GFGHIGITVDDVYKACERFERLGV--EFAKKPDG-------GK------LKGVAFIKDPDDYWI 170 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~--~~~~~~~~-------~~------~~~~~~~~DPdG~~i 170 (185)
++.-+++..++.++..+.+++.++ ++...+.. .. ....+|+.|++|+++
T Consensus 59 ~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~ 122 (124)
T PF00578_consen 59 GVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIR 122 (124)
T ss_dssp TEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEE
T ss_pred eEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEE
Confidence 567888888888888777777764 44443311 11 234789999999875
No 226
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.19 E-value=70 Score=19.07 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=16.8
Q ss_pred EEEEEe---CCHHHHHHHHHhcCCEE
Q 029933 125 HIGITV---DDVYKACERFERLGVEF 147 (185)
Q Consensus 125 hi~~~v---~dv~~~~~~l~~~G~~~ 147 (185)
.+.+.+ +|.+.+.+.|+++|+++
T Consensus 44 ~~~i~v~~~~~~~~~~~~L~~~G~~v 69 (69)
T cd04909 44 ILRISFKTQEDRERAKEILKEAGYEV 69 (69)
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCcC
Confidence 344555 46789999999999863
No 227
>PF13225 DUF4033: Domain of unknown function (DUF4033)
Probab=26.19 E-value=90 Score=20.48 Aligned_cols=28 Identities=18% Similarity=0.517 Sum_probs=20.5
Q ss_pred HHHHHHHhcCCEEeeeeecCCCceEEEe
Q 029933 42 SLDFYSRVLGMSLLKRLDFPEMKFSLYF 69 (185)
Q Consensus 42 s~~FY~~~LG~~~~~~~~~~~~~~~~~~ 69 (185)
+.+|+++-||+.+.....+.+....+.|
T Consensus 49 tQ~Ff~~~~Glpl~M~PNfed~SC~~~F 76 (86)
T PF13225_consen 49 TQTFFKEEFGLPLTMEPNFEDFSCQMIF 76 (86)
T ss_pred hHHHHHhccCCceEecCCCcCcEEEEEc
Confidence 4599999999999988666664443333
No 228
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=25.83 E-value=43 Score=20.11 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.1
Q ss_pred CChHHHHHHHHHhcCCE
Q 029933 37 KDPKVSLDFYSRVLGMS 53 (185)
Q Consensus 37 ~D~e~s~~FY~~~LG~~ 53 (185)
+-++..++||++.|-|+
T Consensus 41 k~Pq~vI~FYE~~l~f~ 57 (58)
T PF01393_consen 41 KCPQKVIKFYESHLVFK 57 (58)
T ss_dssp HSHHHHHHHHHHTCEEE
T ss_pred HCcHHHHHHHHHHeeec
Confidence 57889999999988664
No 229
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=25.47 E-value=52 Score=17.10 Aligned_cols=17 Identities=18% Similarity=0.524 Sum_probs=12.9
Q ss_pred eCChHHHHHHHHHhcCC
Q 029933 36 IKDPKVSLDFYSRVLGM 52 (185)
Q Consensus 36 v~D~e~s~~FY~~~LG~ 52 (185)
..|.++++.+|++.|.+
T Consensus 12 ~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 12 QGDYEKAIEYYEQALAL 28 (36)
T ss_dssp CT-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 46889999999997743
No 230
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=25.44 E-value=1.3e+02 Score=22.94 Aligned_cols=12 Identities=42% Similarity=0.540 Sum_probs=10.0
Q ss_pred eEEEEECCCCcE
Q 029933 158 GVAFIKDPDDYW 169 (185)
Q Consensus 158 ~~~~~~DPdG~~ 169 (185)
+..|+.||+|.+
T Consensus 125 R~~FIIDp~g~i 136 (194)
T COG0450 125 RGTFIIDPDGVI 136 (194)
T ss_pred eEEEEECCCCeE
Confidence 578999999954
No 231
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=25.34 E-value=1e+02 Score=21.91 Aligned_cols=27 Identities=15% Similarity=0.564 Sum_probs=19.7
Q ss_pred EEEEEEeC-ChHHHHHHHHHhcCCEEeee
Q 029933 30 QQTMFRIK-DPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 30 ~h~~l~v~-D~e~s~~FY~~~LG~~~~~~ 57 (185)
..+.|.|+ +=+.++.||++ +||+....
T Consensus 127 ~~~~L~V~~~N~~Ai~lY~~-~GF~~~~~ 154 (177)
T COG0456 127 DKIVLEVRESNEAAIGLYRK-LGFEVVKI 154 (177)
T ss_pred ceEEEEEecCChHHHHHHHH-cCCEEEee
Confidence 34555553 44499999987 99998876
No 232
>KOG2465 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.15 E-value=73 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.0
Q ss_pred CCCCceEEEEEeCCHHHHHHHHHh
Q 029933 119 EPRGFGHIGITVDDVYKACERFER 142 (185)
Q Consensus 119 ~~~g~~hi~~~v~dv~~~~~~l~~ 142 (185)
..-.+.||||.|||.|+.+....-
T Consensus 165 EeitYP~icFavD~FdevF~dvvv 188 (390)
T KOG2465|consen 165 EEITYPEICFAVDDFDEVFDDVVV 188 (390)
T ss_pred ceeccceEEEEecCHHHhhhhhEE
Confidence 344788999999999998876543
No 233
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.99 E-value=2.1e+02 Score=18.74 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=28.8
Q ss_pred ceEEEEEeCC----HHHHHHHHHhcCCEEee---cCCCCccceEEEEECCCCc
Q 029933 123 FGHIGITVDD----VYKACERFERLGVEFAK---KPDGGKLKGVAFIKDPDDY 168 (185)
Q Consensus 123 ~~hi~~~v~d----v~~~~~~l~~~G~~~~~---~~~~~~~~~~~~~~DPdG~ 168 (185)
...+.|.+++ +-.+.+.++.+|+.+.. .|.....+...|+.|-+|+
T Consensus 14 ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 14 VISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred cEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 3567787764 67778889999998864 3432222223444666664
No 234
>PHA00159 endonuclease I
Probab=24.71 E-value=1e+02 Score=22.22 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHhcCCEEeecCCCCcc----ceEEEE---ECCCCcEEEEe
Q 029933 134 YKACERFERLGVEFAKKPDGGKL----KGVAFI---KDPDDYWIEIF 173 (185)
Q Consensus 134 ~~~~~~l~~~G~~~~~~~~~~~~----~~~~~~---~DPdG~~iEl~ 173 (185)
+.....|...|+.+.-+...-.+ ....|. .=|+|.+||+-
T Consensus 21 ~k~ak~Le~~gv~~~yE~~ki~y~~pA~~~~YTPDF~LpnGiiiEvK 67 (148)
T PHA00159 21 DKVSKQLEKKGVKFDYELWKIPYVIPASDHKYTPDFLLPNGIIIETK 67 (148)
T ss_pred HHHHHHHHhcCCCeEeeeeeeeeeccCCCCeeCCceecCCCCEEEec
Confidence 44667888999987655422111 112342 24889998864
No 235
>PF14907 NTP_transf_5: Uncharacterised nucleotidyltransferase
Probab=24.63 E-value=3e+02 Score=21.00 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=34.0
Q ss_pred EEEEEe--CCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 125 HIGITV--DDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 125 hi~~~v--~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
=|.+.| +|++.+.+.|.+.|+...... .....|...+.|..||+..+..
T Consensus 96 DiDlLV~~~d~~~a~~~L~~~Gy~~~~~~----~~~~~~~~~~~~~~idlH~~l~ 146 (249)
T PF14907_consen 96 DIDLLVPPEDLERAVELLEELGYRIESPS----EHHWVYSHEPKGISIDLHWRLF 146 (249)
T ss_pred CeEEEEeCCcHHHHHHHHHHcCCEeccCC----CcceEEEecCCCEEEEEEecCC
Confidence 355666 689999999999999876642 1123444447888899866544
No 236
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=24.19 E-value=1.5e+02 Score=23.82 Aligned_cols=54 Identities=20% Similarity=0.210 Sum_probs=32.1
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEeecCCCCccce--EEEEECCCCcEEEEeecCc
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFAKKPDGGKLKG--VAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~--~~~~~DPdG~~iEl~~~~~ 177 (185)
|..|+.+.|+|++. ..+...|-.+...+.-....+ ++-+.+++-..+.++|++.
T Consensus 154 GnPH~V~~Vddv~~--~~~~~~g~~l~~h~~Fp~~vNV~F~~v~~~~~i~vrv~ERG~ 209 (272)
T COG0253 154 GNPHLVIFVDDVET--ANLEELGPLLESHELFPEGVNVGFVQVLSRDAIRLRVYERGA 209 (272)
T ss_pred CCCeEEEEeCCccc--chhhhhhhhhhcCccCCCceEEEEEEeCCCCcEEEEEeecCC
Confidence 56899999998776 223333333222222112223 3336677889999999985
No 237
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=24.07 E-value=1.8e+02 Score=23.55 Aligned_cols=50 Identities=22% Similarity=0.292 Sum_probs=34.3
Q ss_pred CceEEEEEeCC----HHHHHHHHHhcCCEEee---cCCCCccceEEEEECCCCcEEE
Q 029933 122 GFGHIGITVDD----VYKACERFERLGVEFAK---KPDGGKLKGVAFIKDPDDYWIE 171 (185)
Q Consensus 122 g~~hi~~~v~d----v~~~~~~l~~~G~~~~~---~~~~~~~~~~~~~~DPdG~~iE 171 (185)
....|.|.++| +-+++.-|+.+|+.... .|.....+..+|+.|-+|+.=+
T Consensus 193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~~~~ 249 (279)
T COG0077 193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGHIDD 249 (279)
T ss_pred ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecCcCc
Confidence 34678888886 77778888999997763 4544333444666788887644
No 238
>PF12142 PPO1_DWL: Polyphenol oxidase middle domain; InterPro: IPR022739 This domain is found in bacteria and eukaryotes and is approximately 50 amino acids in length. It is found in association with PF00264 from PFAM and PF12143 from PFAM. Most members are annotated as being polyphenol oxidases, and many are from plants or plastids. There is a conserved DWL sequence motif. ; GO: 0004097 catechol oxidase activity, 0055114 oxidation-reduction process; PDB: 1BT3_A 1BUG_B 1BT1_B 1BT2_B 2P3X_A.
Probab=23.69 E-value=1e+02 Score=18.38 Aligned_cols=17 Identities=6% Similarity=0.000 Sum_probs=12.1
Q ss_pred EEEEECCCCcEEEEeec
Q 029933 159 VAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 159 ~~~~~DPdG~~iEl~~~ 175 (185)
.|+|.|.+|+++.+--+
T Consensus 11 ~F~FYDen~~lVrv~vr 27 (54)
T PF12142_consen 11 SFLFYDENGQLVRVKVR 27 (54)
T ss_dssp EEEEE-TTS-EEEEEGG
T ss_pred eeEEECCCCCEEEEEhh
Confidence 57889999999998654
No 239
>PRK06704 RNA polymerase factor sigma-70; Validated
Probab=22.80 E-value=76 Score=24.69 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=25.5
Q ss_pred EEEeCCHHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEE
Q 029933 127 GITVDDVYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEI 172 (185)
Q Consensus 127 ~~~v~dv~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl 172 (185)
+|.-.|-+.+++.| .|+.+..-+..++. ..|++.|||||-..+
T Consensus 183 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 225 (228)
T PRK06704 183 SIREERPELLTKLL--PTIDFTKLPSKQPV-LLFNVKQPSSYSCML 225 (228)
T ss_pred HHHhcCHHHHHHHh--ccceeeecccccce-EEEEeeCCCccchhh
Confidence 34444555555533 56666665543332 357899999986543
No 240
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.69 E-value=1.9e+02 Score=17.58 Aligned_cols=44 Identities=14% Similarity=0.309 Sum_probs=28.3
Q ss_pred EEEEeCC----HHHHHHHHHhcCCEEeec---CCCCccceEEEEECCCCcE
Q 029933 126 IGITVDD----VYKACERFERLGVEFAKK---PDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 126 i~~~v~d----v~~~~~~l~~~G~~~~~~---~~~~~~~~~~~~~DPdG~~ 169 (185)
+.+.++| +..+...|.++|+.+... +..+..-..|++.|++|..
T Consensus 4 i~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~ 54 (72)
T cd04926 4 LELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNP 54 (72)
T ss_pred EEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCc
Confidence 4455555 556678888999998642 2222222478888999875
No 241
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=22.64 E-value=1.8e+02 Score=21.34 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=13.7
Q ss_pred eEEEEECCCCcEEEEee
Q 029933 158 GVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 158 ~~~~~~DPdG~~iEl~~ 174 (185)
..+|+.||+|.+..++.
T Consensus 156 ~~~~Lidp~G~i~~~y~ 172 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYN 172 (174)
T ss_dssp SEEEEE-TTSEEEEEEC
T ss_pred cEEEEEcCCCcEEEEEc
Confidence 37999999999998874
No 242
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=22.58 E-value=2.6e+02 Score=18.98 Aligned_cols=53 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEE--eecCCC------C----------ccceEEEEECCCCcEEEEee
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEF--AKKPDG------G----------KLKGVAFIKDPDDYWIEIFD 174 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~--~~~~~~------~----------~~~~~~~~~DPdG~~iEl~~ 174 (185)
++.-+++.+++.+.+.+.+++.++.+ ...+.. + ......|+.|++|.++-.+.
T Consensus 57 ~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~ 127 (140)
T cd03017 57 GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWR 127 (140)
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEe
Confidence 45667777777777766666666543 222210 0 00135789999998887764
No 243
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=22.22 E-value=89 Score=21.35 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=14.8
Q ss_pred EEEEeCChHHHHHHHHHhcCCEEe
Q 029933 32 TMFRIKDPKVSLDFYSRVLGMSLL 55 (185)
Q Consensus 32 ~~l~v~D~e~s~~FY~~~LG~~~~ 55 (185)
+...+.|. .+.+||++ +||...
T Consensus 115 l~~~~~n~-~a~~fY~~-~Gf~~~ 136 (144)
T PRK10146 115 LSTNVKRH-DAHRFYLR-EGYEQS 136 (144)
T ss_pred EecCCCch-HHHHHHHH-cCCchh
Confidence 33334554 79999976 998654
No 244
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=22.16 E-value=1.3e+02 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=12.4
Q ss_pred eEEEEECCCCcEEEEe
Q 029933 158 GVAFIKDPDDYWIEIF 173 (185)
Q Consensus 158 ~~~~~~DPdG~~iEl~ 173 (185)
....+.||||..+.|-
T Consensus 29 GsY~y~~pdG~~~~V~ 44 (52)
T PF00379_consen 29 GSYSYIDPDGQTRTVT 44 (52)
T ss_pred EEEEEECCCCCEEEEE
Confidence 3566799999988775
No 245
>PF15632 ATPgrasp_Ter: ATP-grasp in the biosynthetic pathway with Ter operon
Probab=22.12 E-value=1.5e+02 Score=24.59 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=30.9
Q ss_pred EEeCCHHHH---HHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeec
Q 029933 128 ITVDDVYKA---CERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDL 175 (185)
Q Consensus 128 ~~v~dv~~~---~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~ 175 (185)
+.+++.+++ ++++...+.++..+|..+.++..|++.|-+-..++.+..
T Consensus 126 ~~v~t~~el~~a~~~l~~~~~~~CvKP~~g~gg~GFr~l~~~~~~l~~l~~ 176 (329)
T PF15632_consen 126 WRVRTADELKAAYEELRFPGQPLCVKPAVGIGGRGFRVLDESRDELDALFE 176 (329)
T ss_pred EEeCCHHHHHHHHHhcCCCCceEEEecccCCCcceEEEEccCcchHHHhcC
Confidence 456666665 555556666688888887777778877765544444433
No 246
>PHA02754 hypothetical protein; Provisional
Probab=22.09 E-value=1.8e+02 Score=17.55 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=25.1
Q ss_pred HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecC
Q 029933 133 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLK 176 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~ 176 (185)
+.++.+.|.++|+-+..-..-.-.|.-..+.--||..||+-+..
T Consensus 20 MRelkD~LSe~GiYi~RIkai~~SGdkIVVi~aD~I~i~ls~Te 63 (67)
T PHA02754 20 MRELKDILSEAGIYIDRIKAITTSGDKIVVITADAIKIELSETE 63 (67)
T ss_pred HHHHHHHHhhCceEEEEEEEEEecCCEEEEEEcceEEEEEEeee
Confidence 45566777888987654221111112133344788888887654
No 247
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=21.67 E-value=2.1e+02 Score=20.11 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.8
Q ss_pred CceEEEEEeCCHHHHHHHHHhcCCEEe
Q 029933 122 GFGHIGITVDDVYKACERFERLGVEFA 148 (185)
Q Consensus 122 g~~hi~~~v~dv~~~~~~l~~~G~~~~ 148 (185)
-|..|.+.|++-+++++.|.++|+.+.
T Consensus 41 dFGIiRmvV~~~d~A~~~Lee~gF~Vr 67 (142)
T COG4747 41 DFGIIRMVVDRPDEAHSVLEEAGFTVR 67 (142)
T ss_pred CcceEEEEcCChHHHHHHHHHCCcEEE
Confidence 456788999999999999999999875
No 248
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.54 E-value=2.1e+02 Score=17.58 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCEEee---cCCCCccceEEEEECCCC
Q 029933 133 VYKACERFERLGVEFAK---KPDGGKLKGVAFIKDPDD 167 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~---~~~~~~~~~~~~~~DPdG 167 (185)
+-.+.+.++++|+++.. .|.....+...|+.|-+|
T Consensus 14 L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 14 LARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred HHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 67788899999998864 343332222344455555
No 249
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.32 E-value=2.3e+02 Score=19.30 Aligned_cols=35 Identities=6% Similarity=0.209 Sum_probs=26.2
Q ss_pred HHHHHHHHHhcCCEEeecCCCCccceEEEEECCCCcEEEEeecCc
Q 029933 133 VYKACERFERLGVEFAKKPDGGKLKGVAFIKDPDDYWIEIFDLKT 177 (185)
Q Consensus 133 v~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~DPdG~~iEl~~~~~ 177 (185)
..++.+.|++.|+. .+++|+.+|.+.++-.+++.+
T Consensus 26 WPE~~a~lk~agi~----------nYSIfLde~~n~lFgy~E~~d 60 (105)
T COG3254 26 WPELLALLKEAGIR----------NYSIFLDEEENLLFGYWEYED 60 (105)
T ss_pred cHHHHHHHHHcCCc----------eeEEEecCCcccEEEEEEEcC
Confidence 45566777777774 245888889999999999884
No 250
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=1.1e+02 Score=21.51 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=21.2
Q ss_pred eEEEEEeCCHHHHHHHHHhcCCEEe
Q 029933 124 GHIGITVDDVYKACERFERLGVEFA 148 (185)
Q Consensus 124 ~hi~~~v~dv~~~~~~l~~~G~~~~ 148 (185)
.||-.+-.|++.+++.|+++|..+.
T Consensus 103 DhiLVr~~dLekAv~~L~eaGhev~ 127 (128)
T COG3603 103 DHILVREEDLEKAVKALEEAGHEVL 127 (128)
T ss_pred ceEEEehhhHHHHHHHHHHcCCccc
Confidence 4777777899999999999998764
No 251
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=21.17 E-value=1.4e+02 Score=21.90 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEeCCHHHHHHHHHhcCCEEee
Q 029933 126 IGITVDDVYKACERFERLGVEFAK 149 (185)
Q Consensus 126 i~~~v~dv~~~~~~l~~~G~~~~~ 149 (185)
+-+.+.|++.+.++|++.|..+..
T Consensus 6 ~K~~v~d~~~~~~~L~~~g~~~~~ 29 (174)
T TIGR00318 6 VKAKIPDKEKVVEKLKNKGFKFIK 29 (174)
T ss_pred EEEEcCCHHHHHHHHHhcCccccc
Confidence 446778999999999999976543
No 252
>PTZ00330 acetyltransferase; Provisional
Probab=21.09 E-value=1.3e+02 Score=20.63 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=16.9
Q ss_pred EEEEEeCChHHHHHHHHHhcCCEEeee
Q 029933 31 QTMFRIKDPKVSLDFYSRVLGMSLLKR 57 (185)
Q Consensus 31 h~~l~v~D~e~s~~FY~~~LG~~~~~~ 57 (185)
.+.+.+. +.+.+||++ +||+....
T Consensus 118 ~l~l~~n--~~a~~~y~k-~GF~~~~~ 141 (147)
T PTZ00330 118 KVILDCT--EDMVAFYKK-LGFRACER 141 (147)
T ss_pred EEEEecC--hHHHHHHHH-CCCEEece
Confidence 4455543 579999965 99987764
No 253
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=20.94 E-value=1.4e+02 Score=18.18 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=11.5
Q ss_pred HHHHHHHHHhcCCEE
Q 029933 40 KVSLDFYSRVLGMSL 54 (185)
Q Consensus 40 e~s~~FY~~~LG~~~ 54 (185)
..+.+||.. +||++
T Consensus 66 ~~~~~fY~~-~GF~~ 79 (79)
T PF13508_consen 66 PAAIKFYEK-LGFEE 79 (79)
T ss_dssp HHHHHHHHH-TTEEE
T ss_pred HHHHHHHHH-CcCCC
Confidence 689999976 89874
No 254
>PRK11899 prephenate dehydratase; Provisional
Probab=20.31 E-value=2.4e+02 Score=22.77 Aligned_cols=47 Identities=26% Similarity=0.330 Sum_probs=31.8
Q ss_pred ceEEEEEeCC----HHHHHHHHHhcCCEEee---cCCCCccceEEEEECCCCcE
Q 029933 123 FGHIGITVDD----VYKACERFERLGVEFAK---KPDGGKLKGVAFIKDPDDYW 169 (185)
Q Consensus 123 ~~hi~~~v~d----v~~~~~~l~~~G~~~~~---~~~~~~~~~~~~~~DPdG~~ 169 (185)
...|.|.++| +-.+++.++.+|+++.. .|.....+..+|+.|-+|+.
T Consensus 194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~~ 247 (279)
T PRK11899 194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGHP 247 (279)
T ss_pred eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECCC
Confidence 3578888876 77788999999998763 45433333335557777763
Done!