Query 029934
Match_columns 185
No_of_seqs 108 out of 1154
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 09:13:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029934.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029934hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_J 20S proteasome; cell cy 100.0 8.8E-47 3E-51 295.9 24.0 176 1-176 1-177 (205)
2 1iru_M 20S proteasome; cell cy 100.0 1.2E-46 4E-51 296.8 24.7 176 1-177 2-186 (213)
3 1yar_H Proteasome beta subunit 100.0 1.6E-46 5.6E-51 297.0 22.9 173 1-176 1-173 (217)
4 1ryp_M 20S proteasome; multica 100.0 3.4E-46 1.2E-50 296.1 24.0 175 1-176 2-194 (222)
5 1ryp_J 20S proteasome; multica 100.0 2.3E-45 7.8E-50 287.6 24.1 174 2-176 2-176 (204)
6 3h4p_a Proteasome subunit beta 100.0 8.1E-45 2.8E-49 287.7 21.8 169 8-176 1-169 (219)
7 1j2q_H Proteasome beta subunit 100.0 3.7E-44 1.3E-48 280.3 22.8 167 9-176 1-167 (202)
8 1ryp_N 20S proteasome; multica 100.0 8.3E-44 2.8E-48 284.2 19.6 172 5-177 5-188 (233)
9 1ryp_A 20S proteasome; multica 100.0 1.3E-43 4.4E-48 284.7 20.5 170 6-177 27-208 (243)
10 1ryp_K 20S proteasome; multica 100.0 1.9E-43 6.5E-48 275.5 20.8 168 8-176 1-171 (198)
11 1iru_L 20S proteasome; cell cy 100.0 4.3E-43 1.5E-47 274.7 22.4 166 9-176 1-166 (204)
12 1iru_N 20S proteasome; cell cy 100.0 9.3E-44 3.2E-48 281.4 18.8 170 5-176 5-179 (219)
13 1ryp_L 20S proteasome; multica 100.0 3.4E-43 1.1E-47 276.9 21.8 167 9-176 1-167 (212)
14 1ryp_H 20S proteasome; multica 100.0 5.5E-43 1.9E-47 274.4 22.0 170 5-177 6-175 (205)
15 1iru_H 20S proteasome; cell cy 100.0 5.4E-43 1.9E-47 274.3 21.7 166 9-176 1-166 (205)
16 1ryp_C 20S proteasome; multica 100.0 8E-43 2.8E-47 280.2 22.6 170 6-176 29-202 (244)
17 3nzj_K Proteasome component PR 100.0 5.4E-43 1.8E-47 287.0 22.0 171 5-176 72-242 (287)
18 1iru_K 20S proteasome; cell cy 100.0 8.3E-43 2.8E-47 272.5 21.6 169 8-177 1-171 (201)
19 1ryp_D 20S proteasome; multica 100.0 1.7E-42 5.7E-47 278.0 22.9 170 5-175 25-202 (241)
20 1g0u_M Proteasome component PR 100.0 4.7E-43 1.6E-47 285.0 19.8 173 2-176 36-220 (266)
21 1yar_A Proteasome alpha subuni 100.0 1.8E-42 6.3E-47 276.4 22.3 168 6-176 32-203 (233)
22 1iru_A 20S proteasome; cell cy 100.0 2.2E-42 7.4E-47 278.0 22.5 168 7-176 35-208 (246)
23 3unf_H Proteasome subunit beta 100.0 2.8E-42 9.6E-47 275.6 22.5 166 9-177 1-166 (234)
24 3nzj_H Proteasome component PU 100.0 2.6E-42 8.8E-47 279.7 22.3 170 5-177 26-195 (261)
25 1ryp_E 20S proteasome; multica 100.0 1.3E-42 4.5E-47 278.6 20.2 170 5-176 23-202 (242)
26 1iru_C 20S proteasome; cell cy 100.0 1.7E-42 5.9E-47 280.9 21.0 170 6-176 29-203 (261)
27 1iru_B 20S proteasome; cell cy 100.0 2E-42 6.8E-47 276.2 20.5 169 6-177 29-201 (233)
28 1q5q_H Proteasome beta-type su 100.0 5.6E-42 1.9E-46 274.0 22.2 167 9-176 1-177 (235)
29 1ryp_I 20S proteasome; multica 100.0 5.8E-42 2E-46 271.8 22.1 165 9-176 1-165 (222)
30 1iru_D 20S proteasome; cell cy 100.0 2.9E-42 9.9E-47 277.7 20.6 168 6-175 27-200 (248)
31 1iru_E 20S proteasome; cell cy 100.0 3.5E-42 1.2E-46 276.1 20.8 169 5-176 31-208 (241)
32 1iru_G 20S proteasome; cell cy 100.0 2.7E-42 9.1E-47 278.8 20.2 169 5-175 30-202 (254)
33 3unf_N Proteasome subunit beta 100.0 1.1E-41 3.9E-46 265.6 21.1 166 9-177 1-166 (199)
34 1q5r_H Proteasome beta-type su 100.0 1.5E-41 5.1E-46 279.3 22.3 171 5-176 62-242 (294)
35 1ryp_B 20S proteasome; multica 100.0 1.2E-41 4.2E-46 274.3 21.0 169 6-176 29-202 (250)
36 1j2p_A Alpha-ring, proteasome 100.0 2.6E-41 9E-46 271.8 22.8 167 6-176 32-202 (246)
37 1ryp_G 20S proteasome; multica 100.0 1.8E-41 6.1E-46 272.5 21.7 169 5-176 27-202 (244)
38 1iru_I 20S proteasome; cell cy 100.0 3E-41 1E-45 269.7 22.6 165 9-176 1-165 (234)
39 3h4p_A Proteasome subunit alph 100.0 3.7E-42 1.3E-46 279.4 17.5 168 6-176 36-207 (264)
40 3nzj_F Proteasome component C1 100.0 2E-41 6.8E-46 277.9 21.5 168 6-176 32-206 (288)
41 2jay_A Proteasome; hydrolase; 100.0 2E-41 6.9E-46 278.3 19.4 171 5-176 54-234 (291)
42 3mi0_A Proteasome subunit alph 100.0 7.5E-41 2.6E-45 269.3 21.7 160 6-174 25-192 (248)
43 1ryp_F 20S proteasome; multica 100.0 6.9E-41 2.4E-45 267.3 19.2 164 6-174 29-200 (233)
44 1iru_F 20S proteasome; cell cy 100.0 7E-41 2.4E-45 271.8 18.6 166 6-176 30-201 (263)
45 1q5q_A Proteasome alpha-type s 100.0 2E-39 6.8E-44 262.7 20.8 160 6-174 25-192 (259)
46 2z3b_A ATP-dependent protease 100.0 3.7E-35 1.3E-39 225.8 17.9 156 5-175 2-165 (180)
47 1m4y_A ATP-dependent protease 100.0 4.8E-35 1.6E-39 223.3 17.8 154 9-176 1-158 (171)
48 1g3k_A ATP-dependent protease 100.0 2.5E-34 8.5E-39 219.9 18.8 154 9-176 1-159 (174)
49 3jtz_A Integrase; four strande 34.9 32 0.0011 22.1 3.0 26 155-182 57-82 (88)
50 3kwr_A Putative RNA-binding pr 32.3 55 0.0019 21.6 3.8 25 157-182 37-61 (97)
51 1u84_A Hypothetical protein; s 28.9 75 0.0026 20.7 3.9 39 142-181 51-89 (90)
52 1ojh_A NBLA; degradation prote 24.0 79 0.0027 19.3 3.1 21 155-175 23-43 (65)
53 2q8v_A NBLA protein; phycobili 23.8 81 0.0028 19.2 3.1 31 144-175 18-48 (63)
54 3lvl_A NIFU-like protein; prot 22.5 68 0.0023 22.1 3.0 52 118-170 42-94 (129)
55 2qq4_A Iron-sulfur cluster bio 21.3 1.7E+02 0.0059 20.2 5.0 56 118-175 43-99 (138)
56 3ju0_A Phage integrase; four s 20.6 94 0.0032 20.7 3.3 23 155-177 57-79 (108)
57 4eo3_A Bacterioferritin comigr 20.2 14 0.00048 29.7 -1.2 35 118-152 103-137 (322)
No 1
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=8.8e-47 Score=295.88 Aligned_cols=176 Identities=53% Similarity=0.901 Sum_probs=167.2
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029934 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
||||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|++.+++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (205)
T 1iru_J 1 MSIMSYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGR 80 (205)
T ss_dssp -CCTTSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCcccCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 79999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecC-CCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCH
Q 029934 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVC 159 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~-~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ 159 (185)
+++++.+|+++++++|++|..||++++|+||||+ +++|+||.+||+|++.++.+|.|+|+|+++++++||+.|+++||+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 9999999999999999988789999999999995 478999999999998666558999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029934 160 NIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 160 eea~~l~~~al~~~~~~ 176 (185)
|||++++++||+.....
T Consensus 161 eea~~l~~~al~~~~~~ 177 (205)
T 1iru_J 161 DHLFETISQAMLNAVDR 177 (205)
T ss_dssp HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999987764
No 2
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.2e-46 Score=296.77 Aligned_cols=176 Identities=24% Similarity=0.367 Sum_probs=168.7
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029934 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
.|||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.+++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (213)
T 1iru_M 2 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNK 81 (213)
T ss_dssp CCSCCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhc--------
Q 029934 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM-------- 152 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~-------- 152 (185)
+++++.+|+++++++|++|+|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.
T Consensus 82 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~-~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 82 AMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDS-FKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEES-EEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred CCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECC-EEEEeeCHHHHHHHHhhccccccccc
Confidence 99999999999999999888999999999999976679999999999999997 999999999999999999
Q ss_pred -CCCCCCHHHHHHHHHHHHHHHhhcc
Q 029934 153 -FKPDMVCNIRFFSLLLDIRMLFHGI 177 (185)
Q Consensus 153 -~~~~~s~eea~~l~~~al~~~~~~~ 177 (185)
|+++||+|||++++++||+.....-
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d 186 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERD 186 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHB
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 8899999999999999999887643
No 3
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=1.6e-46 Score=297.02 Aligned_cols=173 Identities=21% Similarity=0.359 Sum_probs=160.3
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCC
Q 029934 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREER 80 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (185)
|||+.++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|++++++
T Consensus 1 ~~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 80 (217)
T 1yar_H 1 MNQTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRV 80 (217)
T ss_dssp --------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 89999999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029934 81 DMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 81 ~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
+++++.+++++++++|.+|+|||++++|+|||| +||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||.|
T Consensus 81 ~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~s~e 157 (217)
T 1yar_H 81 NMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDI-YASTGSGSPFVYGVLESQYSEKMTVD 157 (217)
T ss_dssp CCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEES-EEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecC-EEEEcCCHHHHHHHHHhhcccCCCHH
Confidence 999999999999999998889999999999999 579999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 029934 161 IRFFSLLLDIRMLFHG 176 (185)
Q Consensus 161 ea~~l~~~al~~~~~~ 176 (185)
||++++++||+.....
T Consensus 158 ea~~la~~al~~~~~r 173 (217)
T 1yar_H 158 EGVDLVIRAISAAKQR 173 (217)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988664
No 4
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=3.4e-46 Score=296.11 Aligned_cols=175 Identities=19% Similarity=0.283 Sum_probs=168.4
Q ss_pred CCcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcC-
Q 029934 1 MSITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE- 79 (185)
Q Consensus 1 ~~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~- 79 (185)
+|||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+++++
T Consensus 2 ~~p~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~ 81 (222)
T 1ryp_M 2 FNPYGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHND 81 (222)
T ss_dssp CCCCCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCccccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5899999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhc-------
Q 029934 80 RDMKPETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM------- 152 (185)
Q Consensus 80 ~~~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~------- 152 (185)
++++++.+|+++++++|++|++||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.
T Consensus 82 ~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~-~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 82 KKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQ-CRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEES-EEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecC-EEEEcCcHHHHHHHHhccccccccc
Confidence 999999999999999999888999999999999976779999999999999997 999999999999999998
Q ss_pred ----------CCCCCCHHHHHHHHHHHHHHHhhc
Q 029934 153 ----------FKPDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 153 ----------~~~~~s~eea~~l~~~al~~~~~~ 176 (185)
|+++||+|||++++++||+...+.
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~r 194 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATER 194 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999987764
No 5
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=2.3e-45 Score=287.63 Aligned_cols=174 Identities=43% Similarity=0.776 Sum_probs=166.0
Q ss_pred CcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCC
Q 029934 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERD 81 (185)
Q Consensus 2 ~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (185)
|||.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+ +++++++|..+|++.+.++++.+++.|+++++++
T Consensus 2 ~~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 80 (204)
T 1ryp_J 2 DPSSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERA 80 (204)
T ss_dssp CGGGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCcCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 899999999999999999999999999999998888999999999 9999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhccCCceeeeeeEEeecC-CCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029934 82 MKPETFASLVSALLYEKRFGPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 82 ~~~~~la~~l~~~~~~~r~~P~~vs~llaG~d~-~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
++++.+|+++++++|++|..||++++|+||||+ +++|+||.+||+|++.++.++.|+|+|+++++++||+.|+++||+|
T Consensus 81 ~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~e 160 (204)
T 1ryp_J 81 IEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPE 160 (204)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHH
Confidence 999999999999999988779999999999996 5789999999999986665589999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 029934 161 IRFFSLLLDIRMLFHG 176 (185)
Q Consensus 161 ea~~l~~~al~~~~~~ 176 (185)
||++++++||+.....
T Consensus 161 ea~~l~~~al~~~~~~ 176 (204)
T 1ryp_J 161 DLFETISQALLNAADR 176 (204)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987764
No 6
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=8.1e-45 Score=287.68 Aligned_cols=169 Identities=22% Similarity=0.384 Sum_probs=162.3
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029934 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++||+++++|+.+|++.+.++++.+++.|++.++++++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 79999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHH
Q 029934 88 ASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLL 167 (185)
Q Consensus 88 a~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~ 167 (185)
++++++++|.+|++||++++|+||||++++|+||++||+|++.+++++.|+|+|+++++++||+.|+++||+|||+++++
T Consensus 81 a~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~ 160 (219)
T 3h4p_a 81 ATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLAL 160 (219)
T ss_dssp HHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999998889999999999999767899999999999998866999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 029934 168 LDIRMLFHG 176 (185)
Q Consensus 168 ~al~~~~~~ 176 (185)
+||+...+.
T Consensus 161 ~al~~~~~r 169 (219)
T 3h4p_a 161 NALKSAMER 169 (219)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhh
Confidence 999988765
No 7
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=3.7e-44 Score=280.35 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=160.8
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+|.|||++++|+||||+ ++|+||.+||+|++.+++++.|+|+|+++++++||+.|+++||+|||++++++
T Consensus 81 ~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~ 159 (202)
T 1j2q_H 81 TLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVR 159 (202)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHH
Confidence 99999999988899999999999997 68999999999999998559999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 160 al~~~~~~ 167 (202)
T 1j2q_H 160 AIYSAMKR 167 (202)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988664
No 8
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=8.3e-44 Score=284.20 Aligned_cols=172 Identities=15% Similarity=0.229 Sum_probs=164.0
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhh-----hcC
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-----REE 79 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-----~~~ 79 (185)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|++ .++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (233)
T 1ryp_N 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAE 84 (233)
T ss_dssp CEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTT
T ss_pred ccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred CCCCHHHHHHHHHHHHHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--
Q 029934 80 RDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-- 155 (185)
Q Consensus 80 ~~~~~~~la~~l~~~~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~-- 155 (185)
++++++.+|+++++++|++| +|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|++
T Consensus 85 ~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~ 163 (233)
T 1ryp_N 85 EALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSP-TLATGFGAHMANPLLRKVVDRES 163 (233)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCS-EEECTHHHHHHHHHHTTTCSSGG
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcC-EEEECcCHHHHHHHHHHhhcccc
Confidence 99999999999999999977 7899999999999976699999999999999997 999999999999999999999
Q ss_pred ---CCCHHHHHHHHHHHHHHHhhcc
Q 029934 156 ---DMVCNIRFFSLLLDIRMLFHGI 177 (185)
Q Consensus 156 ---~~s~eea~~l~~~al~~~~~~~ 177 (185)
+||+|||++++++||+.....-
T Consensus 164 ~~~~ms~eea~~la~~al~~~~~rd 188 (233)
T 1ryp_N 164 DIPKTTVQVAEEAIVNAMRVLYYRD 188 (233)
T ss_dssp GGGGCCHHHHHHHHHHHHHHHHHHB
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999887643
No 9
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.3e-43 Score=284.74 Aligned_cols=170 Identities=16% Similarity=0.142 Sum_probs=161.8
Q ss_pred cc-CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 6 YN-GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 6 ~~-g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+++++|+.+|++.+.++++.+++.|++.++++|++
T Consensus 27 ~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v 105 (243)
T 1ryp_A 27 NQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPC 105 (243)
T ss_dssp TTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred hcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 46 9999999999999999999998 778888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC-----
Q 029934 85 ETFASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP----- 155 (185)
Q Consensus 85 ~~la~~l~~~~--~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~----- 155 (185)
+.+|+++++++ |++| +|||++++|+||||++++|+||++||+|++.+++ +.|+|+|++.++++||+.|++
T Consensus 106 ~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~-~~a~G~gs~~a~~~Le~~~~~~~~~~ 184 (243)
T 1ryp_A 106 DVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYK-ATATGPKQQEITTNLENHFKKSKIDH 184 (243)
T ss_dssp HHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEE-EEEECCCcHHHHHHHHHHhhhccccc
Confidence 99999999999 7776 7999999999999976789999999999999998 999999999999999999998
Q ss_pred --CCCHHHHHHHHHHHHHHHhhcc
Q 029934 156 --DMVCNIRFFSLLLDIRMLFHGI 177 (185)
Q Consensus 156 --~~s~eea~~l~~~al~~~~~~~ 177 (185)
+||+|||++++++||+......
T Consensus 185 ~~~ms~eea~~l~~~al~~~~~rd 208 (243)
T 1ryp_A 185 INEESWEKVVEFAITHMIDALGTE 208 (243)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTCC
T ss_pred ccCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999887754
No 10
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.9e-43 Score=275.47 Aligned_cols=168 Identities=18% Similarity=0.311 Sum_probs=159.6
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029934 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
++|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|+.+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAV 80 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHH
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58999999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcc-C-CceeeeeeEEeecC-CCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029934 88 ASLVSALLYEKR-F-GPYFCQPVIAGLSD-EDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 88 a~~l~~~~~~~r-~-~P~~vs~llaG~d~-~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
++++++++|.++ . +||++++|+||||+ +++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|||++
T Consensus 81 a~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~-~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 159 (198)
T 1ryp_K 81 SSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELP-YGAHGYSGFYTFSLLDHHYRPDMTTEEGLD 159 (198)
T ss_dssp HHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECS-EEECTTHHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECC-EEEEcccHHHHHHHHHhhcCCCCCHHHHHH
Confidence 999999998853 4 59999999999996 4789999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 029934 165 SLLLDIRMLFHG 176 (185)
Q Consensus 165 l~~~al~~~~~~ 176 (185)
++++||+.....
T Consensus 160 l~~~al~~~~~~ 171 (198)
T 1ryp_K 160 LLKLCVQELEKR 171 (198)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 11
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=4.3e-43 Score=274.72 Aligned_cols=166 Identities=16% Similarity=0.188 Sum_probs=160.2
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++||++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+|.+||++++|+||||+ ++|+||++||+|++.+++ +.|+|+|+++++++||+.|+++||.|||++++++
T Consensus 81 ~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~ 158 (204)
T 1iru_L 81 KLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGA-TFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARR 158 (204)
T ss_dssp HHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECS-EEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeC-CEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 99999999988789999999999997 689999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 159 al~~~~~r 166 (204)
T 1iru_L 159 AIYQATYR 166 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987764
No 12
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=9.3e-44 Score=281.37 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=162.6
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhh-hcCCCCC
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL-REERDMK 83 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~-~~~~~~~ 83 (185)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++ .++++++
T Consensus 5 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (219)
T 1iru_N 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYS 84 (219)
T ss_dssp CSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCC
T ss_pred ccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 357999999999999999999999999999999999999999999999999999999999999999999998 8999999
Q ss_pred HHHHHHHHHHHHHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--CCCH
Q 029934 84 PETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DMVC 159 (185)
Q Consensus 84 ~~~la~~l~~~~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~ 159 (185)
++.+|+++++++|++| +|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|++ +||+
T Consensus 85 v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~~mt~ 162 (219)
T 1iru_N 85 PRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAP-SLATGYGAYLAQPLLREVLEKQPVLSQ 162 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECS-EEECTTHHHHTHHHHHHHHTSCSCCCH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECC-eEEECccHHHHHHHHHhhcCCCCCCCH
Confidence 9999999999999877 899999999999997 599999999999999997 999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029934 160 NIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 160 eea~~l~~~al~~~~~~ 176 (185)
+||++++++||+.....
T Consensus 163 eea~~l~~~al~~~~~~ 179 (219)
T 1iru_N 163 TEARDLVERCMRVLYYR 179 (219)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999887664
No 13
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=3.4e-43 Score=276.91 Aligned_cols=167 Identities=20% Similarity=0.229 Sum_probs=160.6
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+|..||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||++||++++++
T Consensus 81 ~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~ 159 (212)
T 1ryp_L 81 KILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGD-IFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKR 159 (212)
T ss_dssp HHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECS-EEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecC-CEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence 999999999887799999999999965789999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 160 al~~~~~r 167 (212)
T 1ryp_L 160 SILAAAHR 167 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987664
No 14
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=5.5e-43 Score=274.37 Aligned_cols=170 Identities=20% Similarity=0.291 Sum_probs=161.7
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.+++ +++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v 84 (205)
T 1ryp_H 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PST 84 (205)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCH
T ss_pred CcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCH
Confidence 4679999999999999999999999998888899999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029934 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
+.+|+++++++|.+|.+ |++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|||++
T Consensus 85 ~~la~~l~~~~~~~~~~-~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~s~eea~~ 162 (205)
T 1ryp_H 85 ETAASVFKELCYENKDN-LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLP-YAIAGSGSTFIYGYCDKNFRENMSKEETVD 162 (205)
T ss_dssp HHHHHHHHHHHHHTTTT-CCEEEEEEEEETTTEEEEEEECTTSCCEEES-EEEESGGGGGGHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhhhcC-ceEEEEEEEEecCCCcEEEEECCCccEEecC-EEEEEecHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999998755 9999999999976789999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029934 165 SLLLDIRMLFHGI 177 (185)
Q Consensus 165 l~~~al~~~~~~~ 177 (185)
++++||+.....-
T Consensus 163 l~~~al~~a~~~d 175 (205)
T 1ryp_H 163 FIKHSLSQAIKWD 175 (205)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887643
No 15
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.4e-43 Score=274.32 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=159.3
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||+.+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 69999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+|. ||++++|+||||++++|+||.+||+|++.+++ ++++|+|+++++++||+.|+++||.|||++++++
T Consensus 81 ~~l~~~~~~~~~-p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~-~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~ 158 (205)
T 1iru_H 81 SLFKEMCYRYRE-DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQS-FAIGGSGSSYIYGYVDATYREGMTKEECLQFTAN 158 (205)
T ss_dssp HHHHHHHHHTTT-TCCEEEEEEEEETTTEEEEEEECTTSCCEECS-EEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCc-CccEEEEEEEEeCCCCCEEEEECCCCcEEecC-EEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999998764 99999999999976789999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 159 al~~~~~~ 166 (205)
T 1iru_H 159 ALALAMER 166 (205)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99988764
No 16
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=8e-43 Score=280.18 Aligned_cols=170 Identities=15% Similarity=0.201 Sum_probs=160.4
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|++.++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 108 (244)
T 1ryp_C 29 SHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVE 108 (244)
T ss_dssp TTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999998777688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029934 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+|++++++++.+ ++|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+||
T Consensus 109 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (244)
T 1ryp_C 109 ILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWK-AISVGANTSAAQTLLQMDYKDDMKVDD 187 (244)
T ss_dssp HHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBS-EEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeee-EEEECCCcHHHHHHHHHhhhcCCCHHH
Confidence 9999999999542 37899999999999954799999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029934 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.....
T Consensus 188 a~~la~~al~~~~~r 202 (244)
T 1ryp_C 188 AIELALKTLSKTTDS 202 (244)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987665
No 17
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5.4e-43 Score=287.05 Aligned_cols=171 Identities=19% Similarity=0.225 Sum_probs=161.9
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
..+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+++++|..+|++.+.++++.+++.|++.+++++++
T Consensus 72 v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv 151 (287)
T 3nzj_K 72 IAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISV 151 (287)
T ss_dssp ----CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred eccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029934 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
+.+++++++++|.+|.+||++++|+||||++++|+||++||+|++.+++ +.|+|+|+++++++||+.|+++||+|||++
T Consensus 152 ~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~-~~AiGsgs~~a~~~Le~~y~~dms~eEAi~ 230 (287)
T 3nzj_K 152 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGD-IFCVGSGQTFAYGVLDSNYKWDLSVEDALY 230 (287)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECS-EEEESTTHHHHHHHHHTSCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcC-eEEEecchHHHHHHHHHhhcCCCCHHHHHH
Confidence 9999999999999887899999999999966799999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 029934 165 SLLLDIRMLFHG 176 (185)
Q Consensus 165 l~~~al~~~~~~ 176 (185)
++++||+...++
T Consensus 231 la~~aL~~a~~r 242 (287)
T 3nzj_K 231 LGKRSILAAAHR 242 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988765
No 18
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=8.3e-43 Score=272.52 Aligned_cols=169 Identities=19% Similarity=0.277 Sum_probs=159.0
Q ss_pred CceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029934 8 GSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 8 g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
++|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+++++++++++.+
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~ 80 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAA 80 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHH
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 58999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-Hhcc-CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHH
Q 029934 88 ASLVSALL-YEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFS 165 (185)
Q Consensus 88 a~~l~~~~-~~~r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l 165 (185)
++++++.+ |..+ .+||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|||+++
T Consensus 81 a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 159 (201)
T 1iru_K 81 ANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAP-FAAHGYGAFLTLSILDRYYTPTISRERAVEL 159 (201)
T ss_dssp HHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECS-EEEESHHHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECC-EEEECCcHHHHHHHHHhcccCCCCHHHHHHH
Confidence 99998865 5533 4799999999999976789999999999999997 9999999999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q 029934 166 LLLDIRMLFHGI 177 (185)
Q Consensus 166 ~~~al~~~~~~~ 177 (185)
+++||+....+.
T Consensus 160 ~~~al~~a~~rd 171 (201)
T 1iru_K 160 LRKCLEELQKRF 171 (201)
T ss_dssp HHHHHHHHHHTB
T ss_pred HHHHHHHHHhhc
Confidence 999999887654
No 19
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=1.7e-42 Score=277.95 Aligned_cols=170 Identities=19% Similarity=0.289 Sum_probs=160.7
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|+++++|+.+|++.+.++++.+++.|++.++++|++
T Consensus 25 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 104 (241)
T 1ryp_D 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTV 104 (241)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 35799999999999999999999999988877789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCceeeeeeEEeecCC-CCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcC---CCC
Q 029934 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDE-DKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMF---KPD 156 (185)
Q Consensus 85 ~~la~~l~~~~~~~r----~~P~~vs~llaG~d~~-~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~---~~~ 156 (185)
+.+|+++++++|.++ +|||++++|+||||++ ++|+||++||+|++.+++ +.|+|+|+++++++||+.| +++
T Consensus 105 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~ 183 (241)
T 1ryp_D 105 EYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWS-AQTIGRNSKTVREFLEKNYDRKEPP 183 (241)
T ss_dssp HHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHTTCCTTSCC
T ss_pred HHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEee-eEEECCCcHHHHHHHHHhhhcccCC
Confidence 999999999998742 5799999999999975 689999999999999997 9999999999999999999 999
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 029934 157 MVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 157 ~s~eea~~l~~~al~~~~~ 175 (185)
||+|||++++++||+....
T Consensus 184 ms~eea~~l~~~al~~~~~ 202 (241)
T 1ryp_D 184 ATVEECVKLTVRSLLEVVQ 202 (241)
T ss_dssp CSHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 20
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=4.7e-43 Score=284.99 Aligned_cols=173 Identities=15% Similarity=0.233 Sum_probs=164.3
Q ss_pred CcccccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhh-----
Q 029934 2 SITEYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQL----- 76 (185)
Q Consensus 2 ~~~~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~----- 76 (185)
.|+. +|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|+++++|..+|++.|.+++|.+++.|++
T Consensus 36 ~av~-~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~ 114 (266)
T 1g0u_M 36 QPIV-TGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 114 (266)
T ss_dssp CCCE-EECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cCcc-cCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchh
Confidence 3444 7999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHHhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC
Q 029934 77 REERDMKPETFASLVSALLYEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK 154 (185)
Q Consensus 77 ~~~~~~~~~~la~~l~~~~~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~ 154 (185)
.++++++++.+|+++++++|++| ++||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+
T Consensus 115 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~ 193 (266)
T 1g0u_M 115 DAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSP-TLATGFGAHMANPLLRKVVD 193 (266)
T ss_dssp TTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCS-EEECTHHHHTHHHHHTTTCS
T ss_pred hcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCC-EEEEccCHHHHHHHHHHhhc
Confidence 89999999999999999999977 7899999999999976699999999999999997 99999999999999999999
Q ss_pred C-----CCCHHHHHHHHHHHHHHHhhc
Q 029934 155 P-----DMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 155 ~-----~~s~eea~~l~~~al~~~~~~ 176 (185)
+ +||+|||++++++||+.....
T Consensus 194 ~~~~~~~ms~eeA~~la~~al~~a~~r 220 (266)
T 1g0u_M 194 RESDIPKTTVQVAEEAIVNAMRVLYYR 220 (266)
T ss_dssp SGGGGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9 999999999999999988764
No 21
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=1.8e-42 Score=276.37 Aligned_cols=168 Identities=16% Similarity=0.173 Sum_probs=159.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++|++++||..+|++.+.++++.+++.|+++++++++++
T Consensus 32 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 110 (233)
T 1yar_A 32 KKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIE 110 (233)
T ss_dssp TTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999986 67778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc----CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029934 86 TFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~r----~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+|+++++++|.++ .|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+||
T Consensus 111 ~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~s~ee 188 (233)
T 1yar_A 111 NLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYK-ATAIGSGKDAVVSFLEREYKENLPEKE 188 (233)
T ss_dssp HHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBS-EEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeee-EEEEcCCcHHHHHHHHHHhccCCCHHH
Confidence 99999999998643 589999999999997 689999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029934 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.....
T Consensus 189 a~~la~~al~~~~~~ 203 (233)
T 1yar_A 189 AVTLGIKALKSSLEE 203 (233)
T ss_dssp HHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987665
No 22
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.2e-42 Score=278.05 Aligned_cols=168 Identities=17% Similarity=0.257 Sum_probs=159.0
Q ss_pred cCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHH
Q 029934 7 NGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPET 86 (185)
Q Consensus 7 ~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (185)
+|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|+++++|..+|++.+.++++.+++.|++.++++++++.
T Consensus 35 ~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~ 113 (246)
T 1iru_A 35 GGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDM 113 (246)
T ss_dssp TCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHH
T ss_pred CCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 49999999999999999999998 57888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--Hhcc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--CCCHH
Q 029934 87 FASLVSALL--YEKR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DMVCN 160 (185)
Q Consensus 87 la~~l~~~~--~~~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~e 160 (185)
+|+++++++ |+++ +|||++++|+||||++++|+||++||+|++.+++ +.|+|+|+++++++||+.|++ +|++|
T Consensus 114 la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~ms~e 192 (246)
T 1iru_A 114 LCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFK-ATAAGVKQTESTSFLEKKVKKKFDWTFE 192 (246)
T ss_dssp HHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS-EEEEETTHHHHHHHHHHHTTSCCCCCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEee-EEEECCCcHHHHHHHHHhhcccCCCCHH
Confidence 999999985 6655 7899999999999976789999999999999997 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhc
Q 029934 161 IRFFSLLLDIRMLFHG 176 (185)
Q Consensus 161 ea~~l~~~al~~~~~~ 176 (185)
||++++++||+.....
T Consensus 193 ea~~la~~al~~~~~r 208 (246)
T 1iru_A 193 QTVETAITCLSTVLSI 208 (246)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988764
No 23
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.8e-42 Score=275.62 Aligned_cols=166 Identities=16% Similarity=0.203 Sum_probs=158.6
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 79999999999999999999999888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+ .+||++++|+||||+ +||+||++||+|++.+++ +.|+|+|+++++++||+.|+++|++|||++++++
T Consensus 81 ~~l~~~l~~~-~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~ 157 (234)
T 3unf_H 81 RILRQTLFRY-QGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLP-FTALGSGQGAAVALLEDRFQPNMTLEAAQELLVE 157 (234)
T ss_dssp HHHHHHHHHT-TTCSCEEEEEEEEET-TEEEEEEECTTSCEEECS-EEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCccEEEEEEEEeC-CCCEEEEECCCCCEEecc-EEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHH
Confidence 9999999876 479999999999997 589999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 029934 169 DIRMLFHGI 177 (185)
Q Consensus 169 al~~~~~~~ 177 (185)
||+.....-
T Consensus 158 al~~~~~~D 166 (234)
T 3unf_H 158 AITAGILSD 166 (234)
T ss_dssp HHHHHHHHB
T ss_pred HHHHHHhhc
Confidence 999886643
No 24
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.6e-42 Score=279.74 Aligned_cols=170 Identities=15% Similarity=0.202 Sum_probs=159.1
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|++.+++++++
T Consensus 26 v~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v 105 (261)
T 3nzj_H 26 TSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRV 105 (261)
T ss_dssp ----CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred cccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHH
Q 029934 85 ETFASLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFF 164 (185)
Q Consensus 85 ~~la~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~ 164 (185)
+.+++++++.+|.++ +||++++|+||||+ .||+||++||+|++.+++ +.|+|+|+++++++||+.|+++||+|||++
T Consensus 106 ~~~a~~l~~~l~~~~-~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~ 182 (261)
T 3nzj_H 106 VSALQMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGY-YLSLGSGSLAAMAVLESHWKQDLTKEEAIK 182 (261)
T ss_dssp HHHHHHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECS-EEEESTTHHHHHHHHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CcccEEEEEEEEeC-CCCEEEEECCCccEEecC-eEEeccchHHHHHHHHHHhccCCCHHHHHH
Confidence 999999999998764 79999999999997 589999999999999997 999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q 029934 165 SLLLDIRMLFHGI 177 (185)
Q Consensus 165 l~~~al~~~~~~~ 177 (185)
++++||+...+..
T Consensus 183 la~~al~~a~~rD 195 (261)
T 3nzj_H 183 LASDAIQAGIWND 195 (261)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhC
Confidence 9999999887643
No 25
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.3e-42 Score=278.63 Aligned_cols=170 Identities=15% Similarity=0.176 Sum_probs=160.1
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|+++|++++||..+|++.+.++++.+++.|++.+++++++
T Consensus 23 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 101 (242)
T 1ryp_E 23 IKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINV 101 (242)
T ss_dssp HTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 357999999999999999999999998776 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----------CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCC
Q 029934 85 ETFASLVSALLYEKR----------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFK 154 (185)
Q Consensus 85 ~~la~~l~~~~~~~r----------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~ 154 (185)
+.+++++++++|.++ .|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+
T Consensus 102 ~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~ 180 (242)
T 1ryp_E 102 ESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN-AKAIGSGSEGAQAELLNEWH 180 (242)
T ss_dssp HHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC-EEEECCCCHHHHHHHHHhhc
Confidence 999999999886631 6799999999999955789999999999999997 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 029934 155 PDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~ 176 (185)
++||+|||++++++||+.....
T Consensus 181 ~~ms~eea~~la~~al~~~~~~ 202 (242)
T 1ryp_E 181 SSLTLKEAELLVLKILKQVMEE 202 (242)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSS
T ss_pred cCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999988765
No 26
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=1.7e-42 Score=280.91 Aligned_cols=170 Identities=12% Similarity=0.127 Sum_probs=161.4
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 108 (261)
T 1iru_C 29 GHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCE 108 (261)
T ss_dssp TTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 58999999999999999999999999888887799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcc----CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC-CCCHH
Q 029934 86 TFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP-DMVCN 160 (185)
Q Consensus 86 ~la~~l~~~~~~~r----~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~-~~s~e 160 (185)
.+|++++++++.++ +|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|++ +||++
T Consensus 109 ~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~ms~e 187 (261)
T 1iru_C 109 QLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWK-ATCIGNNSAAAVSMLKQDYKEGEMTLK 187 (261)
T ss_dssp HHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECS-EEEESTTTTHHHHHHHHHCCTTCCCHH
T ss_pred HHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeee-eEEeCcccHHHHHHHHHhhccCCCCHH
Confidence 99999999997753 6899999999999965789999999999999997 999999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHhhc
Q 029934 161 IRFFSLLLDIRMLFHG 176 (185)
Q Consensus 161 ea~~l~~~al~~~~~~ 176 (185)
||++++++||+.....
T Consensus 188 eA~~la~~al~~~~~~ 203 (261)
T 1iru_C 188 SALALAIKVLNKTMDV 203 (261)
T ss_dssp HHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999877654
No 27
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=2e-42 Score=276.17 Aligned_cols=169 Identities=17% Similarity=0.244 Sum_probs=158.7
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|+++++|..+|++.+.++++.+++.|++.++++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 107 (233)
T 1iru_B 29 AGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTA 107 (233)
T ss_dssp HTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 579999999999999999999998 5788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--cc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029934 86 TFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~--~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.++++++++++. ++ +|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+||
T Consensus 108 ~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~ms~ee 185 (233)
T 1iru_B 108 QLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWK-ATAMGKNYVNGKTFLEKRYNEDLELED 185 (233)
T ss_dssp HHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEee-EEEECCCCHHHHHHHHHHhccCCCHHH
Confidence 999999999944 33 689999999999995 689999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcc
Q 029934 162 RFFSLLLDIRMLFHGI 177 (185)
Q Consensus 162 a~~l~~~al~~~~~~~ 177 (185)
|++++++||+......
T Consensus 186 a~~la~~al~~~~~~d 201 (233)
T 1iru_B 186 AIHTAILTLKESFEGQ 201 (233)
T ss_dssp HHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998776543
No 28
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=5.6e-42 Score=274.04 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=159.3
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++++++++||..+|++.+.++++.+++.|++.++++++++.+|
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc---CCceeeeeeEEeecCCCC-----cEEEEECCCcceeee--CcEEEEecChHhHHHHHHhcCCCCCC
Q 029934 89 SLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKELA--KDFVVAGTAGESLYGACEAMFKPDMV 158 (185)
Q Consensus 89 ~~l~~~~~~~r---~~P~~vs~llaG~d~~~~-----~~Ly~~d~~G~~~~~--~~~~aiG~g~~~~~~~Le~~~~~~~s 158 (185)
+.+++++|.++ +|||++++|+||||++++ |+||++||+|++.++ + +.|+|+|+++++++||+.|+++||
T Consensus 81 ~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms 159 (235)
T 1q5q_H 81 NRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG-YHAVGSGSLFAKSALKKIYSPDSD 159 (235)
T ss_dssp HHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSS-EEEESTTHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCC-eEEECCCHHHHHHHHHhhcCCCCC
Confidence 99999998754 789999999999998657 999999999999988 7 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 029934 159 CNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 159 ~eea~~l~~~al~~~~~~ 176 (185)
+|||++++++||+.....
T Consensus 160 ~eeA~~la~~al~~a~~~ 177 (235)
T 1q5q_H 160 EETALRAAIESLYDAADD 177 (235)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999999987764
No 29
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=5.8e-42 Score=271.82 Aligned_cols=165 Identities=15% Similarity=0.205 Sum_probs=158.3
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 69999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++.+|.++ +||++++|+||||+ +||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|||++++++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~ 157 (222)
T 1ryp_I 81 QMLKQHLFKYQ-GHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGY-YLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASD 157 (222)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEEET-TEEEEEEECTTSCEEECS-EEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhcC-CCCCeeEEEEEEeC-CCCEEEEECCCCCEEecC-EEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHH
Confidence 99999998864 79999999999997 689999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 158 al~~~~~~ 165 (222)
T 1ryp_I 158 AIQAGIWN 165 (222)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99987654
No 30
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=2.9e-42 Score=277.69 Aligned_cols=168 Identities=14% Similarity=0.230 Sum_probs=158.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+ ++..++.+||++|++||+++++|+.+|++.+.++++.+++.|++.++++++++
T Consensus 27 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 105 (248)
T 1iru_D 27 KKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVE 105 (248)
T ss_dssp HTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 57999999999999999999999997 56778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCC--CH
Q 029934 86 TFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDM--VC 159 (185)
Q Consensus 86 ~la~~l~~~~~~~--r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~--s~ 159 (185)
.+|++++++++.+ + .|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++| |+
T Consensus 106 ~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~m~~s~ 184 (248)
T 1iru_D 106 YITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWK-ANAIGRGAKSVREFLEKNYTDEAIETD 184 (248)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHTTTCCSSTTCSH
T ss_pred HHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEee-EEEECCCcHHHHHHHHHhhcccccCCH
Confidence 9999999999653 2 5899999999999955799999999999999997 99999999999999999999999 99
Q ss_pred HHHHHHHHHHHHHHhh
Q 029934 160 NIRFFSLLLDIRMLFH 175 (185)
Q Consensus 160 eea~~l~~~al~~~~~ 175 (185)
|||++++++||+....
T Consensus 185 eea~~la~~al~~~~~ 200 (248)
T 1iru_D 185 DLTIKLVIKALLEVVQ 200 (248)
T ss_dssp HHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHc
Confidence 9999999999987654
No 31
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.5e-42 Score=276.09 Aligned_cols=169 Identities=18% Similarity=0.270 Sum_probs=159.1
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++ +++.+||++|+++|++++||..+|++.+.++++.+++.|++++++++++
T Consensus 31 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 109 (241)
T 1iru_E 31 IKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTV 109 (241)
T ss_dssp HTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 357999999999999999999999998777 8889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH--Hhcc-------CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC
Q 029934 85 ETFASLVSALL--YEKR-------FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP 155 (185)
Q Consensus 85 ~~la~~l~~~~--~~~r-------~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~ 155 (185)
+.+++++++++ |+++ .|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|++
T Consensus 110 ~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~ 187 (241)
T 1iru_E 110 ESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCD-ARAIGSASEGAQSSLQELYHK 187 (241)
T ss_dssp HHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecc-eEEECCCcHHHHHHHHHHhcc
Confidence 99999999998 4333 579999999999994 789999999999999997 999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhc
Q 029934 156 DMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 156 ~~s~eea~~l~~~al~~~~~~ 176 (185)
+||+|||++++++||+.....
T Consensus 188 ~ms~eea~~la~~al~~~~~~ 208 (241)
T 1iru_E 188 SMTLKEAIKSSLIILKQVMEE 208 (241)
T ss_dssp TCCHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHHHHHhhc
Confidence 999999999999999987765
No 32
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=2.7e-42 Score=278.83 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=158.9
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++. ++.+||++|++||+++++|+.+|++.+.++++.+++.|++.+++++++
T Consensus 30 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~-~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 108 (254)
T 1iru_G 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYEE-GSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPL 108 (254)
T ss_dssp HHTSCCEEEEECSSBEEEEEEEECSCTTBCT-TTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCCCEEEEEECCEEEEEEecccCCCCcCc-CcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3579999999999999999999999988774 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc----CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029934 85 ETFASLVSALLYEKR----FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 85 ~~la~~l~~~~~~~r----~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
+.+++++++++|.++ +|||++++|+||||++++|+||++||+|++.+++ +.|+|+|+++++++||+.|+++|+++
T Consensus 109 ~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~e 187 (254)
T 1iru_G 109 KHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYW-GCAIGKARQAAKTEIEKLQMKEMTCR 187 (254)
T ss_dssp HHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBS-EEEESTTHHHHHHHHTTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeee-eEEecCccHHHHHHHHHhccCCCCHH
Confidence 999999999997653 6899999999999955789999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 029934 161 IRFFSLLLDIRMLFH 175 (185)
Q Consensus 161 ea~~l~~~al~~~~~ 175 (185)
||+++++++|+....
T Consensus 188 ea~~la~~al~~~~~ 202 (254)
T 1iru_G 188 DIVKEVAKIIYIVHD 202 (254)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
No 33
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.1e-41 Score=265.58 Aligned_cols=166 Identities=20% Similarity=0.327 Sum_probs=156.8
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.+.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 79999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++++|.+| +||++++|+||||++++|+||+ |+|++.++++++++|+|+++++++||+.|+++||+|||++++++
T Consensus 81 ~~l~~~l~~~~-~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~ 157 (199)
T 3unf_N 81 NVVKNISYKYR-EDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTN 157 (199)
T ss_dssp HHHHHHHHHTT-TTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHH
Confidence 99999999875 6999999999999867899999 99997666658888999999999999999999999999999999
Q ss_pred HHHHHhhcc
Q 029934 169 DIRMLFHGI 177 (185)
Q Consensus 169 al~~~~~~~ 177 (185)
||+...+.-
T Consensus 158 al~~~~~~d 166 (199)
T 3unf_N 158 AITLAMNRD 166 (199)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999887653
No 34
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.5e-41 Score=279.35 Aligned_cols=171 Identities=15% Similarity=0.166 Sum_probs=162.5
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.|.++.+++.+||++|+++|+++++|..+|++.++++++.+++.|++.+++++++
T Consensus 62 v~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv 141 (294)
T 1q5r_H 62 APHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTF 141 (294)
T ss_dssp SCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCceeeeeeEEeecCCCC-----cEEEEECCCcceeee--CcEEEEecChHhHHHHHHhcCC
Q 029934 85 ETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKELA--KDFVVAGTAGESLYGACEAMFK 154 (185)
Q Consensus 85 ~~la~~l~~~~~~~r---~~P~~vs~llaG~d~~~~-----~~Ly~~d~~G~~~~~--~~~~aiG~g~~~~~~~Le~~~~ 154 (185)
+.+++.+++++|.++ ++||++++||||||++++ |+||++||+|++.++ + +.|+|+|+++++++||+.|+
T Consensus 142 ~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~-~~AiGsgs~~a~~~Le~~y~ 220 (294)
T 1q5r_H 142 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG-YHAVGSGSLFAKSALKKIYS 220 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSS-EEEESTTHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCC-eEEEecCcHHHHHHHHHhcc
Confidence 999999999998754 689999999999997656 999999999999988 6 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 029934 155 PDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~ 176 (185)
++|++|||++++++||+.....
T Consensus 221 ~~ms~eEAi~la~~aL~~a~~r 242 (294)
T 1q5r_H 221 PDSDEETALRAAIESLYDAADD 242 (294)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999987764
No 35
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.2e-41 Score=274.29 Aligned_cols=169 Identities=15% Similarity=0.152 Sum_probs=158.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHH-HhhhcCCCCCH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKL-YQLREERDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~-~~~~~~~~~~~ 84 (185)
++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|+++|++++||..+|++.+.++++.+++. |+..+++++++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (250)
T 1ryp_B 29 KQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPT 107 (250)
T ss_dssp HTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCH
T ss_pred HcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 679999999999999999999998 6788889999999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHHHHHHh----ccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHH
Q 029934 85 ETFASLVSALLYE----KRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCN 160 (185)
Q Consensus 85 ~~la~~l~~~~~~----~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~e 160 (185)
+.+++.+++++.. +++|||++++|+||||++++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+|
T Consensus 108 ~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~e 186 (250)
T 1ryp_B 108 KLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWK-ATAIGKGSVAAKTFLEKRWNDELELE 186 (250)
T ss_dssp HHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHCCTTCCHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeec-eeEecCccHHHHHHHHHHhccCCCHH
Confidence 9998888888743 236899999999999976789999999999999997 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhc
Q 029934 161 IRFFSLLLDIRMLFHG 176 (185)
Q Consensus 161 ea~~l~~~al~~~~~~ 176 (185)
||++++++||+...+.
T Consensus 187 ea~~la~~al~~~~~~ 202 (250)
T 1ryp_B 187 DAIHIALLTLKESVEG 202 (250)
T ss_dssp HHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999988765
No 36
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.6e-41 Score=271.77 Aligned_cols=167 Identities=17% Similarity=0.268 Sum_probs=157.2
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|+++|+++++|..+|++.+.++++.+++.|++.++++++++
T Consensus 32 ~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 110 (246)
T 1j2p_A 32 KRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVK 110 (246)
T ss_dssp HTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHH
T ss_pred HcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 57999999999999999999999986 45578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--cc--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029934 86 TFASLVSALLYE--KR--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~--~r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+|++++++++. ++ .|||++++|+|||| ++|+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||+||
T Consensus 111 ~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~ee 187 (246)
T 1j2p_A 111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYK-ATAIGMGRMAVTEFFEKEYRDDLSFDD 187 (246)
T ss_dssp HHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBS-EEEESTTHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeee-EEEECCCcHHHHHHHHHHhccCCCHHH
Confidence 999999999954 33 67999999999999 589999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029934 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.....
T Consensus 188 a~~la~~al~~~~~~ 202 (246)
T 1j2p_A 188 AMVLGLVAMGLSIES 202 (246)
T ss_dssp HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999988774
No 37
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1.8e-41 Score=272.53 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=158.2
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
.++|+|+|||+++||||||+|+|.+.+.++.+. .+||++|+++|++++||+.+|++.+.++++.+++.|++.+++++++
T Consensus 27 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~-~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 105 (244)
T 1ryp_G 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPI 105 (244)
T ss_dssp HHTSCCEEEEEETTEEEEEEEEECCCTTBCTTT-SCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred HHCCCCEEEEEECCEEEEEEecccCCCCccccc-cCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 367999999999999999999999998877654 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc--c--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhc---CCCCC
Q 029934 85 ETFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM---FKPDM 157 (185)
Q Consensus 85 ~~la~~l~~~~~~~--r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~ 157 (185)
+.+|++++++++.+ + +|||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|+++++++||+. |+++|
T Consensus 106 ~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~m 183 (244)
T 1ryp_G 106 PAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYK-GAATGKGRQSAKAELEKLVDHHPEGL 183 (244)
T ss_dssp HHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEee-EEEECCChHHHHHHHHHhHhhcCCCC
Confidence 99999999999543 2 589999999999996 689999999999999997 999999999999999998 99999
Q ss_pred CHHHHHHHHHHHHHHHhhc
Q 029934 158 VCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 158 s~eea~~l~~~al~~~~~~ 176 (185)
|+|||++++++||+.+++.
T Consensus 184 s~eea~~la~~al~~~~~~ 202 (244)
T 1ryp_G 184 SAREAVKQAAKIIYLAHED 202 (244)
T ss_dssp CHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 38
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=3e-41 Score=269.73 Aligned_cols=165 Identities=18% Similarity=0.217 Sum_probs=157.9
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETFA 88 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la 88 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 69999999999999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHH
Q 029934 89 SLVSALLYEKRFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLL 168 (185)
Q Consensus 89 ~~l~~~~~~~r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~ 168 (185)
+++++.+|.++ +||++++|+||||+ ++|+||.+||+|++.+++ +.|+|+|++.++++||+.|+++||+|||++++++
T Consensus 81 ~~l~~~l~~~~-~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~ 157 (234)
T 1iru_I 81 RMLKQMLFRYR-GYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLP-YVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSE 157 (234)
T ss_dssp HHHHHHHHHTT-TCSCEEEEEEEECS-SCEEEEEECTTSCEEECS-EEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHH
T ss_pred HHHHHHHHhcC-CCCceeEEEEEEcC-CCCEEEEECCCCCEEecC-EEEECCchHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 99999998864 69999999999997 689999999999999997 9999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q 029934 169 DIRMLFHG 176 (185)
Q Consensus 169 al~~~~~~ 176 (185)
||+.....
T Consensus 158 al~~a~~~ 165 (234)
T 1iru_I 158 AIAAGIFN 165 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99987654
No 39
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=3.7e-42 Score=279.40 Aligned_cols=168 Identities=18% Similarity=0.268 Sum_probs=158.7
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+ ++.+++.+||++|++||+++++|+.+|++.++++++.+++.|++.++++++++
T Consensus 36 ~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~ 114 (264)
T 3h4p_A 36 RRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIE 114 (264)
T ss_dssp HHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHH
Confidence 57999999999999999999999986 67788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc--c--CCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHH
Q 029934 86 TFASLVSALLYEK--R--FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNI 161 (185)
Q Consensus 86 ~la~~l~~~~~~~--r--~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~ee 161 (185)
.+|++++++++.+ + +|||++++||||||+ ++|+||++||+|++.+++ +.|+|+|+++++++||+.|+++||+||
T Consensus 115 ~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~ms~ee 192 (264)
T 3h4p_A 115 MLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYK-ATAIGSGRPVVMELLEKEYRDDITLDE 192 (264)
T ss_dssp HHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEES-EEEESTTHHHHTTTHHHHCCTTCCSHH
T ss_pred HHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecC-eEEECCCHHHHHHHHHHhccCCCCHHH
Confidence 9999999998653 2 689999999999996 689999999999999997 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 029934 162 RFFSLLLDIRMLFHG 176 (185)
Q Consensus 162 a~~l~~~al~~~~~~ 176 (185)
|++++++||+.....
T Consensus 193 a~~la~~al~~a~~~ 207 (264)
T 3h4p_A 193 GLELAITALTKANED 207 (264)
T ss_dssp HHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988754
No 40
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=2e-41 Score=277.86 Aligned_cols=168 Identities=13% Similarity=0.129 Sum_probs=158.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+.++.+ ..+||++|++||+|+++|+.+|++.++++++.+++.|++.++++|+++
T Consensus 32 ~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~-~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~ 110 (288)
T 3nzj_F 32 ENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIP 110 (288)
T ss_dssp HTSCCEEEEEETTEEEEEEEEEECCTTBCTT-CSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred hcCCcEEEEEECCEEEEEEcCCcccCCcccc-ccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHH
Confidence 5899999999999999999999999877655 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhc---CCCCCC
Q 029934 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM---FKPDMV 158 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~---~~~~~s 158 (185)
.+|++++++++.+ ++|||+|++||||||+ +||+||++||+|++.+++ ++|+|+|+++++++||+. |+++||
T Consensus 111 ~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~-~~aiGsgs~~a~~~Lek~~~~~~~~ms 188 (288)
T 3nzj_F 111 AFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYK-GAATGKGRQSAKAELEKLVDHHPEGLS 188 (288)
T ss_dssp HHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBS-EEEESTTHHHHHHHHHHHHHHCTTCCC
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcC-EEEEcCcHHHHHHHHHHhccccCCCCC
Confidence 9999999999654 3789999999999998 679999999999999997 999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 029934 159 CNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 159 ~eea~~l~~~al~~~~~~ 176 (185)
++||++++++||..++..
T Consensus 189 ~eEAv~la~~al~~a~~~ 206 (288)
T 3nzj_F 189 AREAVKQAAKIIYLAHED 206 (288)
T ss_dssp HHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999988664
No 41
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=2e-41 Score=278.28 Aligned_cols=171 Identities=12% Similarity=0.110 Sum_probs=149.2
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCH
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKP 84 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~ 84 (185)
..+|+|+|||+++||||||+|+|++.+.++.+++.+||++|++|++|++||..+|++.+.++++.+++.|++.+++++++
T Consensus 54 v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v 133 (291)
T 2jay_A 54 LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133 (291)
T ss_dssp ----CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCH
Confidence 57899999999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcc---CCceeeeeeEEeecCCCC-----cEEEEECCCccee--eeCcEEEEecChHhHHHHHHhcCC
Q 029934 85 ETFASLVSALLYEKR---FGPYFCQPVIAGLSDEDK-----PFICTMDSIGAKE--LAKDFVVAGTAGESLYGACEAMFK 154 (185)
Q Consensus 85 ~~la~~l~~~~~~~r---~~P~~vs~llaG~d~~~~-----~~Ly~~d~~G~~~--~~~~~~aiG~g~~~~~~~Le~~~~ 154 (185)
+.+++.+++++|.++ +|||+|++|+||||++++ |+||++||+|++. +++ +.|+|+|+++++++||+.|+
T Consensus 134 ~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~-~~aiGsgs~~a~~~Le~~~~ 212 (291)
T 2jay_A 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG-YQAVGSGSLFAKSSMKKLYS 212 (291)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSS-EEEESTTHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCC-EEEEecCHHHHHHHHHHhcC
Confidence 999999999998864 579999999999997655 9999999999988 776 99999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc
Q 029934 155 PDMVCNIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~ 176 (185)
++||+|||++++++||+...+.
T Consensus 213 ~~ms~eEAi~la~~aL~~a~~~ 234 (291)
T 2jay_A 213 QVTDGDSGLRVAVEALYDAADD 234 (291)
T ss_dssp GCCSHHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999876653
No 42
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=7.5e-41 Score=269.31 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=148.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcC-CCCCH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (185)
++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.+.+.++..++.|++.++ +++++
T Consensus 25 ~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v 96 (248)
T 3mi0_A 25 ARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTG 96 (248)
T ss_dssp HTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCH
Confidence 5799999999999999999998 34689999999999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHH---HhccCCceeeeeeEEeecC---CCCcEEEEECCCcceee-eCcEEEEecChHhHHHHHHhcCCCCC
Q 029934 85 ETFASLVSALL---YEKRFGPYFCQPVIAGLSD---EDKPFICTMDSIGAKEL-AKDFVVAGTAGESLYGACEAMFKPDM 157 (185)
Q Consensus 85 ~~la~~l~~~~---~~~r~~P~~vs~llaG~d~---~~~~~Ly~~d~~G~~~~-~~~~~aiG~g~~~~~~~Le~~~~~~~ 157 (185)
+.+++++++.+ |++++|||+|++||||||+ +++|+||++||+|++.+ ++ +.|+|+|++.++++||+.|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~-~~a~Gsgs~~a~~~Le~~y~~~m 175 (248)
T 3mi0_A 97 RQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPH-FVVMGGTTEPIANALKESYAENA 175 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESS-EEEESSCHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeeccc-EEEECccHHHHHHHHHhhcCCCC
Confidence 99999999543 5556899999999999997 47999999999999995 97 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 029934 158 VCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 158 s~eea~~l~~~al~~~~ 174 (185)
++|||++++++||+...
T Consensus 176 t~eeai~la~~aL~~~~ 192 (248)
T 3mi0_A 176 SLTDALRIAVAALRAGS 192 (248)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999998776
No 43
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=6.9e-41 Score=267.30 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=153.0
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+.. ++.+||++|+++|++++||..+|++.+.++++.+++.|++.++++|+++
T Consensus 29 ~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~ 105 (233)
T 1ryp_F 29 KQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVE 105 (233)
T ss_dssp HTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 5799999999999999999999998742 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh--c--cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--CC--
Q 029934 86 TFASLVSALLYE--K--RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DM-- 157 (185)
Q Consensus 86 ~la~~l~~~~~~--~--r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~-- 157 (185)
.++++++++++. + +.|||++++|+||||+ .||+||++||+|++.+++ +.|+|+|+++++++||+.|++ +|
T Consensus 106 ~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~m~~ 183 (233)
T 1ryp_F 106 RAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELY-GTAIGARSQGAKTYLERTLDTFIKIDG 183 (233)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEES-EEEESTTHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeee-EEEECCCcHHHHHHHHHHhccccccCC
Confidence 999999999943 2 3689999999999997 689999999999999997 999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHHHh
Q 029934 158 VCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 158 s~eea~~l~~~al~~~~ 174 (185)
|+|||+++++++|+..+
T Consensus 184 s~eea~~~a~~al~~~~ 200 (233)
T 1ryp_F 184 NPDELIKAGVEAISQSL 200 (233)
T ss_dssp CHHHHHHHHHHHHTTSC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987554
No 44
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=7e-41 Score=271.78 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=155.1
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPE 85 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~ 85 (185)
++|+|+|||+++||||||+|+|.+.+. .++.+||++|+++|++++||+.+|++.+.++++.+++.|++.++++++++
T Consensus 30 ~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~ 106 (263)
T 1iru_F 30 KQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVS 106 (263)
T ss_dssp HHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHH
T ss_pred HcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHH
Confidence 579999999999999999999999874 24789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----cCCceeeeeeEEeecCCCCcEEEEECCCcceeeeCcEEEEecChHhHHHHHHhcCCC--CCCH
Q 029934 86 TFASLVSALLYEK----RFGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAKDFVVAGTAGESLYGACEAMFKP--DMVC 159 (185)
Q Consensus 86 ~la~~l~~~~~~~----r~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~--~~s~ 159 (185)
.+++++++++|.+ ..|||++++||||||+ ++|+||++||+|++.+++ +.|+|+|+++++++||+.|++ +||+
T Consensus 107 ~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~-~~aiGsgs~~a~~~Le~~~~~~~~ms~ 184 (263)
T 1iru_F 107 RLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCR-AMSIGARSQSARTYLERHMSEFMECNL 184 (263)
T ss_dssp HHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEES-EEEESTTHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEee-EEEcCcccHHHHHHHHHHhcccCCCCH
Confidence 9999999999643 2689999999999997 689999999999999997 999999999999999999998 9999
Q ss_pred HHHHHHHHHHHHHHhhc
Q 029934 160 NIRFFSLLLDIRMLFHG 176 (185)
Q Consensus 160 eea~~l~~~al~~~~~~ 176 (185)
|||++++++||+.....
T Consensus 185 eea~~la~~al~~~~~r 201 (263)
T 1iru_F 185 NELVKHGLRALRETLPA 201 (263)
T ss_dssp HHHHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 99999999999876553
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2e-39 Score=262.68 Aligned_cols=160 Identities=16% Similarity=0.226 Sum_probs=148.5
Q ss_pred ccCceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEccCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcC-CCCCH
Q 029934 6 YNGSALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKIHDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREE-RDMKP 84 (185)
Q Consensus 6 ~~g~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~-~~~~~ 84 (185)
.+|+|+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.+.++++.+++.|.+.++ +++++
T Consensus 25 ~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v 96 (259)
T 1q5q_A 25 ARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTG 96 (259)
T ss_dssp HTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCH
T ss_pred hcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCH
Confidence 5799999999999999999998 35689999999999999999999999999999999999988887 49999
Q ss_pred HHHHHHHHHH---HHhccCCceeeeeeEEeec--C-CCCcEEEEECCCccee-eeCcEEEEecChHhHHHHHHhcCCCCC
Q 029934 85 ETFASLVSAL---LYEKRFGPYFCQPVIAGLS--D-EDKPFICTMDSIGAKE-LAKDFVVAGTAGESLYGACEAMFKPDM 157 (185)
Q Consensus 85 ~~la~~l~~~---~~~~r~~P~~vs~llaG~d--~-~~~~~Ly~~d~~G~~~-~~~~~~aiG~g~~~~~~~Le~~~~~~~ 157 (185)
+.+|++++++ .|+.++|||+|++|||||| + +++|+||++||+|++. +++ +.++|+|++.++++||+.|+++|
T Consensus 97 ~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~-~~aiG~gs~~a~~~Le~~~~~~m 175 (259)
T 1q5q_A 97 RSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQH-FVVMGGTTEPIATAMRESYRADL 175 (259)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESS-EEEESSSHHHHHHHHHHHCCTTC
T ss_pred HHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCC-EEEECCChHHHHHHHHhhccCCC
Confidence 9999999995 3666789999999999999 3 4799999999999998 777 99999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 029934 158 VCNIRFFSLLLDIRMLF 174 (185)
Q Consensus 158 s~eea~~l~~~al~~~~ 174 (185)
+++||++++++||+...
T Consensus 176 s~eea~~la~~al~~~~ 192 (259)
T 1q5q_A 176 DLEAAVGIAVNALRQGG 192 (259)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999997665
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=3.7e-35 Score=225.80 Aligned_cols=156 Identities=12% Similarity=0.179 Sum_probs=135.7
Q ss_pred cccCceEEEEEeCCEEEEEEeCCccccce-eecCCcCceEEc-cCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCC
Q 029934 5 EYNGSALVAMVGKNCFAIASDRRLGVQLQ-TIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDM 82 (185)
Q Consensus 5 ~~~g~t~igi~~kdgVvlaad~~~~~~~~-~~~~~~~KI~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (185)
..+|+|+|||+++||||||+|+|++.|.+ +.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+ + .
T Consensus 2 ~~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g--~ 76 (180)
T 2z3b_A 2 SFHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G--N 76 (180)
T ss_dssp CBCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T--C
T ss_pred CCCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C--C
Confidence 36899999999999999999999999888 999999999999 999999999999999999999999999987 3 2
Q ss_pred CHHHHHHHHHHHHHhcc-CCceeeeeeEEeecCCCCcEEEEECCCcceeee--CcEEEEecChHhHHHHHHhcCCC---C
Q 029934 83 KPETFASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELA--KDFVVAGTAGESLYGACEAMFKP---D 156 (185)
Q Consensus 83 ~~~~la~~l~~~~~~~r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~--~~~~aiG~g~~~~~~~Le~~~~~---~ 156 (185)
.+..++ .+++.+++++ .|||++++|+| | +|+||++||+|++.++ + +.|+|+|+++++++||+.|++ +
T Consensus 77 ~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~-~~a~Gsgs~~a~~~le~~~~~~~~~ 149 (180)
T 2z3b_A 77 LKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDG-ILAIGSGGNYALAAGRALKKHAGES 149 (180)
T ss_dssp HHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSS-EEEESTTHHHHHHHHHHHHHHHGGG
T ss_pred hHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCC-EEEECCCHHHHHHHHHHhhhccCCC
Confidence 333333 4566565555 57999999998 3 6999999999999874 6 999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHHHhh
Q 029934 157 MVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 157 ~s~eea~~l~~~al~~~~~ 175 (185)
|+.||+ +++||+...+
T Consensus 150 mt~eel---~~~al~~a~~ 165 (180)
T 2z3b_A 150 MSASEI---ARAALETAGE 165 (180)
T ss_dssp CCHHHH---HHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHHHH
Confidence 999994 5678776654
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=4.8e-35 Score=223.27 Aligned_cols=154 Identities=13% Similarity=0.187 Sum_probs=136.7
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEc-cCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++++++|..+|++.+.++++.+++.|+.+ .++.+
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~ 75 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAA 75 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHH
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHH
Confidence 6999999999999999999999999999999999999 99999999999999999999999999988754 36666
Q ss_pred HHHHHHHHHhcc-CCceeeeeeEEeecCCCCcEEEEECCCcceeeeC-cEEEEecChHhHHHHHHhcCC-CCCCHHHHHH
Q 029934 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAK-DFVVAGTAGESLYGACEAMFK-PDMVCNIRFF 164 (185)
Q Consensus 88 a~~l~~~~~~~r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~-~~~aiG~g~~~~~~~Le~~~~-~~~s~eea~~ 164 (185)
+++.+ .+++++ .+||++++|++ | +|+||++||+|++.+++ ++.|+|+|+++++++||+.|+ ++||. ++
T Consensus 76 ~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~ 146 (171)
T 1m4y_A 76 VELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---RE 146 (171)
T ss_dssp HHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HH
T ss_pred HHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HH
Confidence 66644 667766 46799999987 5 79999999999999863 499999999999999999999 99996 66
Q ss_pred HHHHHHHHHhhc
Q 029934 165 SLLLDIRMLFHG 176 (185)
Q Consensus 165 l~~~al~~~~~~ 176 (185)
++++||+...++
T Consensus 147 l~~~al~~a~~r 158 (171)
T 1m4y_A 147 IVEKAMTIAGEI 158 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 788998887664
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.5e-34 Score=219.93 Aligned_cols=154 Identities=11% Similarity=0.180 Sum_probs=136.6
Q ss_pred ceEEEEEeCCEEEEEEeCCccccceeecCCcCceEEc-cCcEEEEEecChhHHHHHHHHHHHHHHHHhhhcCCCCCHHHH
Q 029934 9 SALVAMVGKNCFAIASDRRLGVQLQTIATDFQRISKI-HDRLFIGLSGLATDSQTLYQRLVFRHKLYQLREERDMKPETF 87 (185)
Q Consensus 9 ~t~igi~~kdgVvlaad~~~~~~~~~~~~~~~KI~~i-~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~l 87 (185)
||+|||+++||||||+|+|++.+.++.+++.+||++| ++|++++++|..+|++.+.++++.+++.|+. +....
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~~~~ 74 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HLLKS 74 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CHHHH
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cHHHH
Confidence 6999999999999999999999989999999999999 9999999999999999999999999998875 45566
Q ss_pred HHHHHHHHHhcc-CCceeeeeeEEeecCCCCcEEEEECCCcceeeeC--cEEEEecChHhHHHHHHhcCC-CCCCHHHHH
Q 029934 88 ASLVSALLYEKR-FGPYFCQPVIAGLSDEDKPFICTMDSIGAKELAK--DFVVAGTAGESLYGACEAMFK-PDMVCNIRF 163 (185)
Q Consensus 88 a~~l~~~~~~~r-~~P~~vs~llaG~d~~~~~~Ly~~d~~G~~~~~~--~~~aiG~g~~~~~~~Le~~~~-~~~s~eea~ 163 (185)
+..+++.++++| +||+ +++++|+| +|+||++||+|++.+++ ++.|+|+|+++++++||+.|+ ++||.+
T Consensus 75 ~~~l~~~~~~~~~~r~~--~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~--- 146 (174)
T 1g3k_A 75 AVELAKDWRTDRALRKL--EAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH--- 146 (174)
T ss_dssp HHHHHHHHHHSTTGGGC--CCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---
T ss_pred HHHHHHHHHhccCcCcc--eEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---
Confidence 677788788776 4564 57778887 69999999999998863 399999999999999999999 999955
Q ss_pred HHHHHHHHHHhhc
Q 029934 164 FSLLLDIRMLFHG 176 (185)
Q Consensus 164 ~l~~~al~~~~~~ 176 (185)
+++++||+...+.
T Consensus 147 ~l~~~al~~a~~r 159 (174)
T 1g3k_A 147 EIVEKSLRIAGDI 159 (174)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888999888764
No 49
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=34.87 E-value=32 Score=22.14 Aligned_cols=26 Identities=19% Similarity=-0.096 Sum_probs=19.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccccCCC
Q 029934 155 PDMVCNIRFFSLLLDIRMLFHGILCIPE 182 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~~~~~~~ 182 (185)
|++|++||-+.+.++.+.+-.|| +||
T Consensus 57 p~~sL~~AR~~a~~~r~~l~~Gi--dp~ 82 (88)
T 3jtz_A 57 PAISLSDARQQREGIRKMLALNI--NLE 82 (88)
T ss_dssp TTSCHHHHHHHHHHHHHHHTCC------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC--Cch
Confidence 78999999999999998885554 454
No 50
>3kwr_A Putative RNA-binding protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative, PS binding protein; HET: GOL; 1.45A {Lactobacillus plantarum}
Probab=32.35 E-value=55 Score=21.56 Aligned_cols=25 Identities=4% Similarity=0.008 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHHhhccccCCC
Q 029934 157 MVCNIRFFSLLLDIRMLFHGILCIPE 182 (185)
Q Consensus 157 ~s~eea~~l~~~al~~~~~~~~~~~~ 182 (185)
-|.+||++-|..||...++.-. +|+
T Consensus 37 dT~eEAl~nA~EAL~~~Le~~~-iP~ 61 (97)
T 3kwr_A 37 ASVQVAADNAANALAIALFEQS-LPP 61 (97)
T ss_dssp SSHHHHHHHHHHHHHHHHTTSC-CCC
T ss_pred CCHHHHHHHHHHHHHHHHHhCc-CCC
Confidence 4899999999999988877655 665
No 51
>1u84_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, PSI center for structural genomics; 1.60A {Geobacillus stearothermophilus} SCOP: a.230.1.1 PDB: 3r2x_C*
Probab=28.90 E-value=75 Score=20.71 Aligned_cols=39 Identities=10% Similarity=-0.012 Sum_probs=27.0
Q ss_pred hHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhccccCC
Q 029934 142 GESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFHGILCIP 181 (185)
Q Consensus 142 ~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~~~~~~~ 181 (185)
++.++.+++.-|...++.|+.+++|.+.|. +-.+..|.+
T Consensus 51 A~~Iq~If~~SFee~~p~e~c~~iA~kLL~-ik~~~sC~~ 89 (90)
T 1u84_A 51 AARIQSIYEFAFDEPIPFPHCLKLARRLLE-LKQAASCPL 89 (90)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHHHHHHH-HHHHHC---
T ss_pred HHHHHHHHHHHHhcccChHHHHHHHHHHHh-hcccCCCCC
Confidence 456667777778778899999999988775 334566654
No 52
>1ojh_A NBLA; degradation protein, phycobilisome degradation, protein BIND; HET: MSE; 1.80A {Anabaena SP} SCOP: a.214.1.1
Probab=23.96 E-value=79 Score=19.32 Aligned_cols=21 Identities=10% Similarity=-0.118 Sum_probs=17.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhh
Q 029934 155 PDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~ 175 (185)
.+||.|+|.++.++.++.+.-
T Consensus 23 ~~ls~EQaqe~Lve~~rQmMi 43 (65)
T 1ojh_A 23 QNMSHDQAKDFLVKLYEQMVV 43 (65)
T ss_dssp HTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHH
Confidence 369999999999999886653
No 53
>2q8v_A NBLA protein; phycobilisome, nutrient starvation, disassembly, bleaching, protein binding; 2.50A {Thermosynechococcus vulcanus} PDB: 2qdo_A
Probab=23.81 E-value=81 Score=19.15 Aligned_cols=31 Identities=19% Similarity=0.029 Sum_probs=21.7
Q ss_pred hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 029934 144 SLYGACEAMFKPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 144 ~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (185)
+-+..++... .+||.|+|.++.++.++.+.-
T Consensus 18 F~L~~~~~qV-~~ls~EQAqe~Lve~~rQmMi 48 (63)
T 2q8v_A 18 FQMRVMEEQV-SAMSLQEARELLLQASRLLMM 48 (63)
T ss_dssp HHHHHHHHHH-HTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCHHHHHHHHHHHHHHHHH
Confidence 3344444433 369999999999999887653
No 54
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=22.47 E-value=68 Score=22.11 Aligned_cols=52 Identities=13% Similarity=-0.006 Sum_probs=36.8
Q ss_pred cEEE-EECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 029934 118 PFIC-TMDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDI 170 (185)
Q Consensus 118 ~~Ly-~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al 170 (185)
-.|| .+|..|.+.... |.+.|.+...+-.-+=..+-.+.|.+||.++..+.+
T Consensus 42 i~l~l~v~~~~~I~d~~-f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~i 94 (129)
T 3lvl_A 42 MKLQIKVNDEGIIEDAR-FKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDI 94 (129)
T ss_dssp EEEEEEECSSSCEEEEE-EEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCHHHH
T ss_pred EEEEEEECCCCeEEEEE-EEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3455 466568888887 889998876666655555556899999988766543
No 55
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=21.33 E-value=1.7e+02 Score=20.22 Aligned_cols=56 Identities=7% Similarity=-0.156 Sum_probs=40.8
Q ss_pred cEEEE-ECCCcceeeeCcEEEEecChHhHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhh
Q 029934 118 PFICT-MDSIGAKELAKDFVVAGTAGESLYGACEAMFKPDMVCNIRFFSLLLDIRMLFH 175 (185)
Q Consensus 118 ~~Ly~-~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~~~~~~s~eea~~l~~~al~~~~~ 175 (185)
-.||. ++ .|.+.... |.+.|.+...+-+-+=..+-.+.|.+||.++...-++++..
T Consensus 43 i~l~l~v~-~~~I~d~~-f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~~~~~ml~~ 99 (138)
T 2qq4_A 43 VEVMVLLE-GDTIADIR-FQGQGCAISTASASLMTEAVKGKKVAEALELSRKFQAMVVE 99 (138)
T ss_dssp EEEEEEEE-TTEEEEEE-EEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHHHHHHHHTT
T ss_pred EEEEEEEC-CCEEEEEE-EEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC
Confidence 44553 43 67788787 88999887777665555556789999999998877765543
No 56
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=20.59 E-value=94 Score=20.71 Aligned_cols=23 Identities=17% Similarity=0.021 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcc
Q 029934 155 PDMVCNIRFFSLLLDIRMLFHGI 177 (185)
Q Consensus 155 ~~~s~eea~~l~~~al~~~~~~~ 177 (185)
|++|+.+|-+.+.++...+-.|+
T Consensus 57 p~~SLa~AR~~a~~~r~~l~~Gi 79 (108)
T 3ju0_A 57 PAVSLADARQRRDEAKKLLAAGI 79 (108)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC
Confidence 78999999999999998886654
No 57
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=20.24 E-value=14 Score=29.73 Aligned_cols=35 Identities=11% Similarity=-0.044 Sum_probs=23.0
Q ss_pred cEEEEECCCcceeeeCcEEEEecChHhHHHHHHhc
Q 029934 118 PFICTMDSIGAKELAKDFVVAGTAGESLYGACEAM 152 (185)
Q Consensus 118 ~~Ly~~d~~G~~~~~~~~~aiG~g~~~~~~~Le~~ 152 (185)
+..|-+|+.|.........-.+...+.++..|++.
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~ 137 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRL 137 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhh
Confidence 57899999999854321233444556777777665
Done!