Query 029935
Match_columns 185
No_of_seqs 232 out of 1185
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:58:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029935.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029935hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0372 Serine/threonine speci 100.0 1.4E-47 3.1E-52 298.9 17.3 180 6-185 2-181 (303)
2 cd07420 MPP_RdgC Drosophila me 100.0 2.2E-43 4.8E-48 291.9 21.2 180 3-183 3-189 (321)
3 KOG0373 Serine/threonine speci 100.0 1.6E-43 3.4E-48 272.9 15.4 180 6-185 5-184 (306)
4 cd07415 MPP_PP2A_PP4_PP6 PP2A, 100.0 3.1E-42 6.8E-47 282.0 19.5 179 7-185 2-180 (285)
5 PTZ00239 serine/threonine prot 100.0 7.1E-42 1.5E-46 281.6 20.4 179 7-185 3-181 (303)
6 cd07416 MPP_PP2B PP2B, metallo 100.0 1.4E-41 3.1E-46 280.6 20.9 178 6-184 2-179 (305)
7 PTZ00480 serine/threonine-prot 100.0 8.8E-41 1.9E-45 276.2 19.3 179 6-185 10-196 (320)
8 cd07414 MPP_PP1_PPKL PP1, PPKL 100.0 1.2E-40 2.6E-45 273.6 18.6 178 7-185 2-187 (293)
9 PTZ00244 serine/threonine-prot 100.0 1.7E-40 3.7E-45 272.5 18.3 180 5-185 2-189 (294)
10 smart00156 PP2Ac Protein phosp 100.0 5.6E-40 1.2E-44 267.4 19.4 164 20-184 1-164 (271)
11 KOG0374 Serine/threonine speci 100.0 2.2E-40 4.7E-45 274.7 15.7 167 19-185 31-198 (331)
12 cd07417 MPP_PP5_C PP5, C-termi 100.0 7.5E-40 1.6E-44 271.1 18.9 182 3-185 12-199 (316)
13 cd07418 MPP_PP7 PP7, metalloph 100.0 4.7E-39 1E-43 270.1 20.7 181 3-183 8-232 (377)
14 cd07419 MPP_Bsu1_C Arabidopsis 100.0 1E-38 2.2E-43 264.5 18.4 167 18-184 19-198 (311)
15 KOG0371 Serine/threonine prote 100.0 3.5E-39 7.7E-44 253.5 11.6 181 5-185 18-198 (319)
16 KOG0375 Serine-threonine phosp 100.0 8.4E-37 1.8E-41 249.6 14.2 177 8-185 49-225 (517)
17 TIGR00668 apaH bis(5'-nucleosy 100.0 8.8E-29 1.9E-33 200.7 12.6 125 47-175 1-131 (279)
18 PRK13625 bis(5'-nucleosyl)-tet 100.0 2.6E-28 5.5E-33 196.5 14.3 123 47-171 1-146 (245)
19 KOG0377 Protein serine/threoni 100.0 5E-29 1.1E-33 208.4 9.9 178 5-183 119-303 (631)
20 cd07422 MPP_ApaH Escherichia c 100.0 3.1E-28 6.7E-33 196.7 13.1 122 49-174 1-128 (257)
21 PRK00166 apaH diadenosine tetr 100.0 9.3E-28 2E-32 195.7 13.5 124 47-174 1-130 (275)
22 cd07423 MPP_PrpE Bacillus subt 99.9 2.5E-27 5.5E-32 189.5 13.6 123 47-171 1-143 (234)
23 cd07413 MPP_PA3087 Pseudomonas 99.9 3.4E-27 7.5E-32 187.4 13.5 118 50-170 2-145 (222)
24 cd07421 MPP_Rhilphs Rhilph pho 99.9 4.1E-27 8.8E-32 191.5 13.1 131 48-179 3-224 (304)
25 cd00144 MPP_PPP_family phospho 99.9 1.3E-26 2.7E-31 183.5 13.1 126 50-176 1-135 (225)
26 PHA02239 putative protein phos 99.9 6.8E-26 1.5E-30 181.2 14.0 130 47-178 1-176 (235)
27 PRK11439 pphA serine/threonine 99.9 3.8E-26 8.3E-31 180.9 12.3 118 45-168 15-146 (218)
28 cd07425 MPP_Shelphs Shewanella 99.9 8.5E-25 1.9E-29 172.1 10.3 121 50-171 1-141 (208)
29 cd07424 MPP_PrpA_PrpB PrpA and 99.9 9.8E-24 2.1E-28 165.8 12.3 118 47-170 1-132 (207)
30 PRK09968 serine/threonine-spec 99.9 2.2E-23 4.9E-28 165.1 12.6 116 46-167 14-143 (218)
31 KOG0376 Serine-threonine phosp 99.8 7.8E-21 1.7E-25 161.5 7.8 180 4-184 167-352 (476)
32 PRK09453 phosphodiesterase; Pr 99.4 1.9E-13 4.2E-18 105.2 6.9 69 47-119 1-77 (182)
33 PF00149 Metallophos: Calcineu 99.4 8.7E-13 1.9E-17 96.8 9.7 75 47-121 1-81 (200)
34 TIGR00040 yfcE phosphoesterase 99.4 1E-12 2.2E-17 98.8 7.7 63 47-118 1-64 (158)
35 cd00841 MPP_YfcE Escherichia c 99.4 2.8E-12 6.1E-17 95.8 9.4 86 48-171 1-89 (155)
36 PF12850 Metallophos_2: Calcin 99.3 4.9E-12 1.1E-16 93.9 5.8 62 47-120 1-62 (156)
37 cd07397 MPP_DevT Myxococcus xa 99.3 3.4E-11 7.3E-16 96.3 9.0 114 48-170 2-160 (238)
38 cd07388 MPP_Tt1561 Thermus the 99.2 2.3E-11 4.9E-16 96.7 7.9 72 46-118 4-75 (224)
39 cd07379 MPP_239FB Homo sapiens 99.0 9.6E-10 2.1E-14 80.5 7.6 61 48-118 1-63 (135)
40 cd07392 MPP_PAE1087 Pyrobaculu 99.0 8.6E-10 1.9E-14 84.2 6.1 66 49-120 1-67 (188)
41 cd07394 MPP_Vps29 Homo sapiens 99.0 3E-09 6.6E-14 81.8 9.1 62 48-118 1-65 (178)
42 PRK11340 phosphodiesterase Yae 98.9 3E-09 6.5E-14 86.9 7.4 71 46-118 49-125 (271)
43 cd00838 MPP_superfamily metall 98.9 8.4E-09 1.8E-13 73.1 8.4 67 50-116 1-69 (131)
44 cd07385 MPP_YkuE_C Bacillus su 98.9 2.6E-09 5.6E-14 84.1 5.9 72 46-119 1-77 (223)
45 PRK05340 UDP-2,3-diacylglucosa 98.8 1.3E-08 2.7E-13 81.8 7.1 71 47-119 1-84 (241)
46 cd07404 MPP_MS158 Microscilla 98.8 4.4E-09 9.5E-14 79.5 4.1 67 49-118 1-68 (166)
47 TIGR03729 acc_ester putative p 98.8 2.2E-08 4.7E-13 80.2 7.0 68 48-118 1-74 (239)
48 TIGR00619 sbcd exonuclease Sbc 98.7 5.8E-08 1.3E-12 78.6 7.6 72 47-118 1-88 (253)
49 cd07396 MPP_Nbla03831 Homo sap 98.7 1E-07 2.2E-12 77.6 8.0 72 48-119 2-87 (267)
50 cd07391 MPP_PF1019 Pyrococcus 98.6 1.5E-07 3.2E-12 71.8 7.7 59 61-119 29-89 (172)
51 PHA02546 47 endonuclease subun 98.6 1.3E-07 2.9E-12 79.6 7.5 72 47-118 1-89 (340)
52 PRK04036 DNA polymerase II sma 98.6 1.7E-07 3.7E-12 82.9 8.0 116 45-167 242-388 (504)
53 cd07402 MPP_GpdQ Enterobacter 98.5 4.1E-07 8.9E-12 72.3 8.3 69 48-118 1-83 (240)
54 PRK11148 cyclic 3',5'-adenosin 98.5 4.6E-07 1E-11 74.0 7.7 72 45-118 13-98 (275)
55 TIGR01854 lipid_A_lpxH UDP-2,3 98.5 3.5E-07 7.5E-12 73.0 6.7 68 49-118 1-81 (231)
56 cd00840 MPP_Mre11_N Mre11 nucl 98.5 4.6E-07 9.9E-12 71.0 7.1 73 48-120 1-91 (223)
57 cd07403 MPP_TTHA0053 Thermus t 98.5 3.9E-07 8.5E-12 66.4 5.7 58 50-118 1-58 (129)
58 cd07390 MPP_AQ1575 Aquifex aeo 98.4 4.6E-07 1E-11 68.8 6.1 67 49-120 1-84 (168)
59 cd07400 MPP_YydB Bacillus subt 98.4 6.6E-07 1.4E-11 65.8 6.6 68 49-117 1-80 (144)
60 COG0622 Predicted phosphoester 98.4 1E-06 2.2E-11 67.4 7.5 65 46-118 1-65 (172)
61 TIGR00583 mre11 DNA repair pro 98.4 1E-06 2.2E-11 75.9 8.2 74 46-119 3-124 (405)
62 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.4 9.9E-07 2.1E-11 71.8 7.6 70 49-118 1-86 (262)
63 TIGR00024 SbcD_rel_arch putati 98.4 1.8E-06 3.9E-11 68.8 7.9 69 47-119 15-103 (225)
64 cd07383 MPP_Dcr2 Saccharomyces 98.4 2.2E-06 4.7E-11 66.7 8.1 70 47-116 3-87 (199)
65 COG1409 Icc Predicted phosphoh 98.3 2.3E-06 5.1E-11 69.4 8.5 73 47-121 1-81 (301)
66 PRK10966 exonuclease subunit S 98.3 1.5E-06 3.3E-11 75.0 7.2 71 47-118 1-87 (407)
67 cd08165 MPP_MPPE1 human MPPE1 98.3 1.1E-06 2.3E-11 66.2 5.3 51 69-119 34-90 (156)
68 cd07393 MPP_DR1119 Deinococcus 98.3 1.4E-06 3.1E-11 69.5 5.9 67 49-117 1-83 (232)
69 cd07399 MPP_YvnB Bacillus subt 98.3 2.6E-06 5.7E-11 67.2 7.1 70 48-118 2-82 (214)
70 COG2129 Predicted phosphoester 98.2 5.2E-06 1.1E-10 65.4 7.9 74 46-120 3-79 (226)
71 COG1408 Predicted phosphohydro 98.2 6E-06 1.3E-10 68.0 6.8 73 46-120 44-120 (284)
72 COG2908 Uncharacterized protei 98.1 2.2E-05 4.7E-10 62.5 9.3 66 50-117 1-79 (237)
73 cd07401 MPP_TMEM62_N Homo sapi 98.1 6.2E-06 1.3E-10 66.9 6.4 70 49-118 2-89 (256)
74 cd07395 MPP_CSTP1 Homo sapiens 98.1 1.2E-05 2.6E-10 65.1 7.9 72 47-118 5-99 (262)
75 cd07398 MPP_YbbF-LpxH Escheric 98.1 7.3E-06 1.6E-10 64.1 5.5 69 50-119 1-83 (217)
76 cd07386 MPP_DNA_pol_II_small_a 98.1 1.2E-05 2.5E-10 64.6 6.7 67 50-118 2-94 (243)
77 cd00839 MPP_PAPs purple acid p 98.0 7E-06 1.5E-10 67.3 5.0 70 46-119 4-82 (294)
78 COG0420 SbcD DNA repair exonuc 98.0 2.7E-05 5.9E-10 66.7 8.0 73 47-119 1-89 (390)
79 PF14582 Metallophos_3: Metall 98.0 9.5E-06 2.1E-10 64.2 4.4 71 47-118 6-102 (255)
80 COG4186 Predicted phosphoester 97.9 3.3E-05 7.2E-10 57.7 6.6 68 48-119 5-87 (186)
81 cd08166 MPP_Cdc1_like_1 unchar 97.8 4.3E-05 9.2E-10 59.6 6.1 50 69-118 38-93 (195)
82 cd00845 MPP_UshA_N_like Escher 97.8 5.5E-05 1.2E-09 60.7 5.9 66 48-118 2-82 (252)
83 cd07384 MPP_Cdc1_like Saccharo 97.8 8.1E-05 1.8E-09 56.8 6.4 53 67-119 39-101 (171)
84 cd07380 MPP_CWF19_N Schizosacc 97.6 0.00012 2.6E-09 54.8 5.6 67 50-117 1-69 (150)
85 COG1407 Predicted ICC-like pho 97.5 0.00041 8.9E-09 55.4 7.5 76 42-119 15-111 (235)
86 cd07410 MPP_CpdB_N Escherichia 97.5 0.00017 3.7E-09 58.9 5.3 66 48-118 2-95 (277)
87 PLN02533 probable purple acid 97.5 0.00021 4.6E-09 62.1 5.4 70 46-118 139-211 (427)
88 cd08164 MPP_Ted1 Saccharomyces 97.3 0.00079 1.7E-08 52.4 6.5 68 52-119 22-112 (193)
89 COG1768 Predicted phosphohydro 97.3 0.00048 1E-08 52.8 4.7 68 47-119 1-87 (230)
90 cd07378 MPP_ACP5 Homo sapiens 97.2 0.001 2.2E-08 54.1 6.5 69 48-118 2-83 (277)
91 cd08163 MPP_Cdc1 Saccharomyces 97.2 0.0037 7.9E-08 50.8 9.4 47 72-118 44-97 (257)
92 cd07408 MPP_SA0022_N Staphyloc 97.1 0.00083 1.8E-08 54.4 5.4 66 48-118 2-82 (257)
93 KOG1432 Predicted DNA repair e 97.1 0.0026 5.5E-08 53.3 8.0 72 47-118 54-147 (379)
94 cd07412 MPP_YhcR_N Bacillus su 97.0 0.00088 1.9E-08 55.2 4.3 66 48-118 2-88 (288)
95 PF06874 FBPase_2: Firmicute f 96.8 0.0018 3.8E-08 58.1 4.9 64 57-125 167-231 (640)
96 KOG3662 Cell division control 96.8 0.0061 1.3E-07 52.4 7.6 74 46-119 48-145 (410)
97 cd07411 MPP_SoxB_N Thermus the 96.7 0.0027 5.8E-08 51.6 4.8 65 48-118 2-95 (264)
98 cd07409 MPP_CD73_N CD73 ecto-5 96.5 0.0063 1.4E-07 49.9 6.1 66 48-118 2-94 (281)
99 cd07406 MPP_CG11883_N Drosophi 96.4 0.0062 1.3E-07 49.3 5.3 66 48-118 2-83 (257)
100 cd00842 MPP_ASMase acid sphing 96.4 0.0084 1.8E-07 49.3 6.1 70 50-119 41-123 (296)
101 TIGR00282 metallophosphoestera 96.4 0.0092 2E-07 48.8 5.9 67 47-118 1-71 (266)
102 PF08321 PPP5: PPP5 TPR repeat 96.2 0.012 2.5E-07 40.7 4.9 42 3-44 53-94 (95)
103 PRK09419 bifunctional 2',3'-cy 96.0 0.0077 1.7E-07 58.6 4.4 66 47-117 661-735 (1163)
104 cd07405 MPP_UshA_N Escherichia 95.8 0.014 2.9E-07 48.1 4.4 66 48-118 2-87 (285)
105 cd07382 MPP_DR1281 Deinococcus 94.9 0.074 1.6E-06 43.2 6.0 66 48-118 1-70 (255)
106 KOG2310 DNA repair exonuclease 94.9 0.084 1.8E-06 46.9 6.5 58 44-101 11-80 (646)
107 cd08162 MPP_PhoA_N Synechococc 94.9 0.043 9.4E-07 45.9 4.6 66 48-118 2-91 (313)
108 KOG2863 RNA lariat debranching 94.7 0.096 2.1E-06 44.4 6.1 73 47-119 1-89 (456)
109 PF04042 DNA_pol_E_B: DNA poly 94.5 0.078 1.7E-06 41.3 5.0 72 49-120 1-93 (209)
110 COG0737 UshA 5'-nucleotidase/2 94.5 0.052 1.1E-06 48.3 4.5 70 45-119 25-116 (517)
111 COG3855 Fbp Uncharacterized pr 94.4 0.023 4.9E-07 49.5 1.9 44 73-121 190-233 (648)
112 PRK09419 bifunctional 2',3'-cy 94.0 0.074 1.6E-06 52.0 4.7 67 47-118 42-139 (1163)
113 cd07407 MPP_YHR202W_N Saccharo 93.9 0.1 2.2E-06 43.0 4.7 67 47-118 6-97 (282)
114 KOG2476 Uncharacterized conser 93.8 0.17 3.6E-06 44.2 6.0 69 46-115 5-75 (528)
115 PRK09420 cpdB bifunctional 2', 93.8 0.081 1.8E-06 48.6 4.4 69 45-118 24-122 (649)
116 TIGR01390 CycNucDiestase 2',3' 93.8 0.082 1.8E-06 48.3 4.3 66 48-118 4-99 (626)
117 KOG0376 Serine-threonine phosp 93.4 0.034 7.5E-07 48.5 1.1 107 19-126 14-124 (476)
118 PTZ00422 glideosome-associated 93.3 0.22 4.8E-06 42.9 5.9 73 45-117 25-108 (394)
119 KOG1378 Purple acid phosphatas 93.2 0.13 2.8E-06 44.9 4.3 73 45-120 146-223 (452)
120 COG1311 HYS2 Archaeal DNA poly 93.2 0.49 1.1E-05 41.6 7.8 75 47-121 226-324 (481)
121 KOG2679 Purple (tartrate-resis 92.7 0.17 3.7E-06 41.5 4.0 70 45-118 42-126 (336)
122 PRK11907 bifunctional 2',3'-cy 92.3 0.2 4.4E-06 47.1 4.6 68 46-118 115-213 (814)
123 KOG3325 Membrane coat complex 92.2 0.35 7.6E-06 36.2 4.8 62 48-118 2-66 (183)
124 COG0639 ApaH Diadenosine tetra 91.9 0.052 1.1E-06 38.8 0.3 61 124-184 7-72 (155)
125 cd07387 MPP_PolD2_C PolD2 (DNA 91.8 0.59 1.3E-05 38.0 6.3 72 49-120 2-109 (257)
126 PRK09558 ushA bifunctional UDP 91.6 0.2 4.4E-06 45.0 3.8 68 46-118 34-121 (551)
127 TIGR01530 nadN NAD pyrophospha 91.5 0.4 8.6E-06 43.2 5.5 66 48-118 2-94 (550)
128 PTZ00235 DNA polymerase epsilo 91.4 0.93 2E-05 37.5 7.0 74 46-119 27-123 (291)
129 KOG3947 Phosphoesterases [Gene 90.9 0.43 9.2E-06 39.2 4.6 67 46-120 61-128 (305)
130 PRK09418 bifunctional 2',3'-cy 89.9 0.45 9.9E-06 44.6 4.4 68 46-118 39-142 (780)
131 KOG3339 Predicted glycosyltran 85.2 16 0.00034 28.5 10.0 85 75-165 40-140 (211)
132 PF06874 FBPase_2: Firmicute f 83.2 1.3 2.7E-05 40.3 3.4 38 33-70 19-56 (640)
133 PF02875 Mur_ligase_C: Mur lig 76.0 11 0.00024 25.0 5.5 68 47-114 12-81 (91)
134 PF13258 DUF4049: Domain of un 75.2 5.7 0.00012 32.1 4.4 90 75-170 86-187 (318)
135 KOG3425 Uncharacterized conser 69.7 29 0.00064 25.0 6.5 61 58-118 11-79 (128)
136 PRK10773 murF UDP-N-acetylmura 68.4 35 0.00075 29.8 8.3 67 47-113 325-392 (453)
137 COG0770 MurF UDP-N-acetylmuram 65.9 52 0.0011 29.1 8.8 94 20-114 300-395 (451)
138 COG1692 Calcineurin-like phosp 64.6 29 0.00062 28.3 6.3 67 47-118 1-71 (266)
139 PF02875 Mur_ligase_C: Mur lig 63.9 28 0.00062 22.9 5.5 63 21-91 23-88 (91)
140 PF12085 DUF3562: Protein of u 63.1 16 0.00034 23.4 3.7 42 2-43 1-42 (66)
141 COG3207 DIT1 Pyoverdine/dityro 61.7 13 0.00029 30.5 4.0 43 41-83 100-156 (330)
142 PF12641 Flavodoxin_3: Flavodo 60.9 45 0.00098 25.0 6.6 52 50-101 2-66 (160)
143 COG4320 Uncharacterized protei 60.5 20 0.00044 30.3 4.9 54 40-101 50-107 (410)
144 KOG3770 Acid sphingomyelinase 59.4 30 0.00064 31.5 6.1 61 61-121 196-266 (577)
145 COG3855 Fbp Uncharacterized pr 58.6 4.4 9.6E-05 35.8 0.8 30 40-69 31-60 (648)
146 cd07382 MPP_DR1281 Deinococcus 57.1 15 0.00033 29.8 3.7 40 76-118 1-40 (255)
147 TIGR00282 metallophosphoestera 55.7 11 0.00025 30.8 2.7 39 76-118 2-41 (266)
148 PF04723 GRDA: Glycine reducta 55.4 83 0.0018 23.3 7.0 69 46-118 5-79 (150)
149 COG3365 Uncharacterized protei 54.2 29 0.00063 24.4 4.1 39 1-39 17-61 (118)
150 COG1692 Calcineurin-like phosp 53.4 25 0.00054 28.6 4.2 38 76-114 2-39 (266)
151 COG1880 CdhB CO dehydrogenase/ 52.9 65 0.0014 24.4 6.1 74 4-86 25-121 (170)
152 PF06490 FleQ: Flagellar regul 51.2 54 0.0012 22.7 5.3 64 48-118 1-81 (109)
153 TIGR01143 murF UDP-N-acetylmur 50.5 1.2E+02 0.0027 26.0 8.5 70 47-116 296-366 (417)
154 PF09846 DUF2073: Uncharacteri 50.4 27 0.00059 24.3 3.5 37 1-37 4-46 (104)
155 TIGR00550 nadA quinolinate syn 48.8 32 0.00069 28.8 4.4 60 21-84 2-63 (310)
156 PRK05564 DNA polymerase III su 48.5 75 0.0016 26.2 6.6 57 18-80 71-128 (313)
157 KOG3040 Predicted sugar phosph 48.1 1.3E+02 0.0029 24.1 7.4 81 2-82 48-147 (262)
158 COG0634 Hpt Hypoxanthine-guani 47.4 1.3E+02 0.0028 23.2 8.1 77 18-98 10-117 (178)
159 PRK08560 tyrosyl-tRNA syntheta 44.7 52 0.0011 27.6 5.2 89 18-115 14-112 (329)
160 TIGR01143 murF UDP-N-acetylmur 42.5 1.7E+02 0.0036 25.2 8.1 84 21-118 308-409 (417)
161 PRK04531 acetylglutamate kinas 40.3 44 0.00096 29.0 4.1 14 157-171 66-79 (398)
162 PRK06581 DNA polymerase III su 40.1 1.2E+02 0.0026 24.8 6.3 57 18-80 67-124 (263)
163 PF08708 PriCT_1: Primase C te 39.4 88 0.0019 19.6 4.6 28 7-34 38-67 (71)
164 PRK14093 UDP-N-acetylmuramoyla 38.7 1.7E+02 0.0038 25.7 7.7 66 47-113 337-408 (479)
165 PRK11929 putative bifunctional 38.7 2E+02 0.0044 27.7 8.7 71 47-117 834-906 (958)
166 cd03770 SR_TndX_transposase Se 37.4 1.5E+02 0.0033 21.2 6.5 59 57-117 52-111 (140)
167 PRK05707 DNA polymerase III su 35.8 1.6E+02 0.0036 24.7 6.8 53 19-77 85-138 (328)
168 PF09949 DUF2183: Uncharacteri 35.6 1.5E+02 0.0032 20.4 5.6 39 67-111 57-95 (100)
169 PF14842 FliG_N: FliG N-termin 35.1 1.4E+02 0.003 20.6 5.3 54 3-68 31-84 (108)
170 PHA02646 virion protein; Provi 35.1 65 0.0014 24.1 3.7 31 1-31 1-31 (156)
171 TIGR00024 SbcD_rel_arch putati 34.9 1.4E+02 0.0031 23.6 6.0 60 16-83 34-99 (225)
172 PTZ00235 DNA polymerase epsilo 34.2 2.5E+02 0.0055 23.4 7.4 90 74-170 27-122 (291)
173 cd07380 MPP_CWF19_N Schizosacc 33.7 1.1E+02 0.0025 22.6 5.0 55 23-81 8-65 (150)
174 KOG1602 Cis-prenyltransferase 33.6 76 0.0016 26.0 4.2 76 21-100 97-180 (271)
175 PRK06090 DNA polymerase III su 33.2 1.7E+02 0.0037 24.6 6.4 61 18-84 86-148 (319)
176 PRK01060 endonuclease IV; Prov 33.0 1.6E+02 0.0036 23.4 6.3 57 47-105 2-60 (281)
177 PRK09162 hypoxanthine-guanine 32.9 2.2E+02 0.0047 21.6 8.8 93 2-100 1-123 (181)
178 PRK15455 PrkA family serine pr 32.4 4.2E+02 0.0091 24.7 9.6 104 6-119 20-149 (644)
179 PF09423 PhoD: PhoD-like phosp 32.2 48 0.0011 28.9 3.2 38 47-85 106-144 (453)
180 COG4030 Uncharacterized protei 32.0 1.6E+02 0.0036 23.9 5.7 59 48-117 183-241 (315)
181 PF14164 YqzH: YqzH-like prote 31.7 1.3E+02 0.0027 19.1 4.1 25 18-42 24-48 (64)
182 PRK06871 DNA polymerase III su 31.7 2.1E+02 0.0045 24.1 6.7 56 19-80 86-142 (325)
183 PF05321 HHA: Haemolysin expre 31.3 1E+02 0.0022 19.1 3.6 33 2-36 7-39 (57)
184 PF13177 DNA_pol3_delta2: DNA 31.2 1.2E+02 0.0026 22.4 4.8 58 20-83 82-141 (162)
185 PRK07276 DNA polymerase III su 29.9 2.1E+02 0.0046 23.7 6.4 55 19-79 83-138 (290)
186 PRK14838 undecaprenyl pyrophos 29.9 76 0.0016 25.6 3.7 75 21-100 71-149 (242)
187 PRK06964 DNA polymerase III su 29.7 2E+02 0.0043 24.5 6.3 60 19-84 111-172 (342)
188 smart00411 BHL bacterial (prok 29.5 1E+02 0.0022 20.1 3.8 32 7-38 3-34 (90)
189 PF02885 Glycos_trans_3N: Glyc 29.3 93 0.002 19.3 3.4 26 7-32 2-27 (66)
190 PF13277 YmdB: YmdB-like prote 29.2 1.4E+02 0.0031 24.3 5.1 64 50-118 1-68 (253)
191 PRK10945 gene expression modul 29.2 1.3E+02 0.0029 19.5 4.0 30 2-33 19-48 (72)
192 KOG3818 DNA polymerase epsilon 29.1 2.2E+02 0.0047 25.4 6.4 87 72-173 280-372 (525)
193 PRK05818 DNA polymerase III su 29.0 1.9E+02 0.0041 23.7 5.8 59 19-82 66-126 (261)
194 PF00216 Bac_DNA_binding: Bact 28.4 61 0.0013 21.2 2.5 32 7-38 3-34 (90)
195 PRK10997 yieM hypothetical pro 28.2 3.3E+02 0.0071 24.5 7.6 46 74-120 417-463 (487)
196 COG5526 Lysozyme family protei 27.6 1.6E+02 0.0035 22.2 4.8 54 5-58 10-67 (191)
197 PRK11509 hydrogenase-1 operon 27.5 2.4E+02 0.0053 20.5 6.7 83 76-179 38-122 (132)
198 TIGR00055 uppS undecaprenyl di 27.4 85 0.0018 25.1 3.5 77 21-101 60-141 (226)
199 PF08497 Radical_SAM_N: Radica 27.1 1.1E+02 0.0023 25.6 4.1 34 66-99 9-43 (302)
200 PRK11930 putative bifunctional 26.9 5E+02 0.011 24.7 9.1 69 47-115 329-400 (822)
201 cd01533 4RHOD_Repeat_2 Member 26.8 1E+02 0.0023 20.7 3.5 91 13-113 5-100 (109)
202 TIGR03395 sphingomy sphingomye 26.2 1.5E+02 0.0031 24.3 4.8 31 74-105 177-207 (283)
203 PF07862 Nif11: Nitrogen fixat 25.7 1.4E+02 0.0031 17.2 3.8 17 2-18 1-17 (49)
204 cd01452 VWA_26S_proteasome_sub 25.7 2.5E+02 0.0054 21.6 5.7 75 23-101 85-161 (187)
205 KOG3818 DNA polymerase epsilon 25.6 4.9E+02 0.011 23.3 8.1 74 46-119 282-370 (525)
206 PF04876 Tenui_NCP: Tenuivirus 25.4 1.5E+02 0.0032 22.3 4.1 38 4-41 110-149 (175)
207 PF10009 DUF2252: Uncharacteri 25.3 86 0.0019 27.1 3.4 52 42-101 37-92 (385)
208 PTZ00349 dehydrodolichyl dipho 25.1 1E+02 0.0022 26.1 3.6 49 21-69 80-132 (322)
209 PF03465 eRF1_3: eRF1 domain 3 24.6 94 0.002 21.7 3.0 54 64-117 28-94 (113)
210 KOG2697 Histidinol dehydrogena 24.5 2.1E+02 0.0046 24.2 5.4 58 27-84 219-285 (446)
211 TIGR02804 ExbD_2 TonB system t 24.4 2.4E+02 0.0052 19.7 5.1 23 48-70 86-108 (121)
212 KOG0609 Calcium/calmodulin-dep 24.3 2E+02 0.0044 26.0 5.6 52 18-72 481-532 (542)
213 PRK07132 DNA polymerase III su 24.3 3.1E+02 0.0066 22.8 6.4 35 46-80 90-125 (299)
214 TIGR00987 himA integration hos 24.2 1.3E+02 0.0029 20.1 3.6 32 7-38 4-35 (96)
215 cd04236 AAK_NAGS-Urea AAK_NAGS 23.6 90 0.0019 25.6 3.1 25 87-111 13-40 (271)
216 PRK14837 undecaprenyl pyrophos 23.5 1E+02 0.0022 24.7 3.3 49 21-69 67-116 (230)
217 COG3792 Uncharacterized protei 23.5 9.7 0.00021 27.3 -2.2 29 52-87 26-60 (122)
218 PRK00485 fumC fumarate hydrata 22.9 5.3E+02 0.012 22.8 8.5 89 13-101 58-151 (464)
219 PF11369 DUF3160: Protein of u 22.8 2.3E+02 0.0049 26.4 5.7 53 7-59 509-562 (630)
220 PRK11475 DNA-binding transcrip 22.6 2E+02 0.0043 22.3 4.8 40 73-117 37-80 (207)
221 COG3433 Aryl carrier domain [S 22.5 54 0.0012 21.4 1.3 22 82-103 23-44 (74)
222 PF04263 TPK_catalytic: Thiami 22.4 1.2E+02 0.0026 21.6 3.2 54 48-101 37-112 (123)
223 PRK14833 undecaprenyl pyrophos 22.2 1.2E+02 0.0026 24.3 3.5 49 21-69 65-114 (233)
224 TIGR01449 PGP_bact 2-phosphogl 22.1 3.4E+02 0.0074 20.3 6.6 67 46-116 101-168 (213)
225 PF02609 Exonuc_VII_S: Exonucl 22.0 1.9E+02 0.0041 17.2 4.0 35 4-39 5-39 (53)
226 COG3897 Predicted methyltransf 21.8 1.6E+02 0.0035 23.3 4.0 44 72-118 140-183 (218)
227 PF15007 CEP44: Centrosomal sp 21.7 40 0.00087 24.6 0.6 19 54-72 1-19 (131)
228 TIGR01201 HU_rel DNA-binding p 21.4 1.6E+02 0.0034 21.6 3.8 31 7-37 33-63 (145)
229 cd03030 GRX_SH3BGR Glutaredoxi 21.4 95 0.0021 20.9 2.4 22 47-68 61-83 (92)
230 PRK13265 glycine/sarcosine/bet 21.4 3.5E+02 0.0075 20.1 7.8 70 45-118 5-80 (154)
231 PRK14840 undecaprenyl pyrophos 21.3 1.3E+02 0.0027 24.5 3.5 49 21-69 83-132 (250)
232 PF10996 Beta-Casp: Beta-Casp 21.2 1.4E+02 0.0031 20.6 3.4 38 75-116 81-118 (126)
233 PRK05926 hypothetical protein; 21.0 4.8E+02 0.01 22.3 7.2 26 4-29 12-37 (370)
234 PRK00955 hypothetical protein; 21.0 1.4E+02 0.0031 27.6 4.1 34 66-99 6-40 (620)
235 TIGR00988 hip integration host 20.9 2.5E+02 0.0053 18.6 4.4 30 7-36 3-33 (94)
236 PRK08769 DNA polymerase III su 20.6 2.8E+02 0.0061 23.3 5.5 39 46-84 113-153 (319)
237 PF01746 tRNA_m1G_MT: tRNA (Gu 20.5 1.1E+02 0.0024 23.2 2.9 36 49-92 83-118 (186)
238 PRK07993 DNA polymerase III su 20.4 3.6E+02 0.0078 22.7 6.2 58 19-82 87-146 (334)
239 PRK14988 GMP/IMP nucleotidase; 20.3 3.4E+02 0.0073 21.0 5.7 64 46-111 109-172 (224)
240 PRK06843 inosine 5-monophospha 20.3 5.9E+02 0.013 22.3 9.8 68 45-118 138-205 (404)
241 PRK14842 undecaprenyl pyrophos 20.3 1.4E+02 0.003 24.2 3.4 49 21-69 69-118 (241)
242 PF01455 HupF_HypC: HupF/HypC 20.2 69 0.0015 20.4 1.4 11 158-168 41-51 (68)
243 COG1060 ThiH Thiamine biosynth 20.0 5.7E+02 0.012 22.0 7.8 108 3-121 5-123 (370)
No 1
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-47 Score=298.95 Aligned_cols=180 Identities=72% Similarity=1.250 Sum_probs=176.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccC
Q 029935 6 DLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVD 85 (185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vd 85 (185)
.+++.++++.+++.+++.|+..||.++.++|.+|+++..++.|+.|+|||||++.+|..+++.-+..+...++|||||||
T Consensus 2 dldr~ie~L~~~~li~E~eV~~LC~~~~eiL~~E~NV~~i~tPvtvcGDIHGQf~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 2 DLDRQIEQLRRCELIAESEVKALCAKVREILVEESNVQRIDTPVTVCGDIHGQFYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcCCCceecCCCcEEeecccchHHHHHHHHHhCCCCCCCceEeecchhc
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEec
Q 029935 86 RGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHG 165 (185)
Q Consensus 86 rG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 165 (185)
||..|+|++-+|..+|.+||+++++||||||...+.+.|||+.||.++||+...|+...+.|+.||+++++++++|||||
T Consensus 82 RG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYGFY~EclrKYG~~~vWr~c~eiFdyL~l~aiid~kifCVHG 161 (303)
T KOG0372|consen 82 RGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYGFYDECLRKYGSANVWRYCTEIFDYLSLAAIIDGKIFCVHG 161 (303)
T ss_pred cccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhhHHHHHHHHcCChHHHHHHHHHHHhhhHhheecCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHhhccccCCC
Q 029935 166 GLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 166 Gi~p~~~~~~~i~~i~R~~~ 185 (185)
|++|+++.++||+.+.|.++
T Consensus 162 GlSP~i~~lDqIr~lDR~~E 181 (303)
T KOG0372|consen 162 GLSPSIQTLDQIRVLDRKQE 181 (303)
T ss_pred CCCcchhhHHHHHHhhcccc
Confidence 99999999999999999875
No 2
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=100.00 E-value=2.2e-43 Score=291.93 Aligned_cols=180 Identities=33% Similarity=0.626 Sum_probs=168.3
Q ss_pred ChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCC----CEEEEeCCCCCHHHHHHHHHhcCCCC-CCeE
Q 029935 3 SQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKC----PVTVCGDIHGQFHDLVELFRIGGNAP-DTNY 77 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~----~i~vigDIHG~~~~l~~ll~~~~~~~-~~~l 77 (185)
|-+.++++++++.+...++++++..||++|+++|+++|+++.+.. +++|||||||++.+|.++++..+.++ .+++
T Consensus 3 ~~~~~~~~i~~~~~~~~l~~~~i~~L~~~a~~il~~ep~vl~i~~~~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~ 82 (321)
T cd07420 3 TKDHIDALIEAFKEKQLLHAKYVLLILREARKVLKQLPNISRVSTSISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPY 82 (321)
T ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEEecCCCCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceE
Confidence 457799999999999999999999999999999999999988765 89999999999999999999988764 4689
Q ss_pred EEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCC--HHHHHHHHHHhhcCCceEE
Q 029935 78 LFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGN--ANVWKHFTDLFDYLPLTAL 155 (185)
Q Consensus 78 v~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lP~~~~ 155 (185)
||||||||||++|.||+.++..++..+|++++++|||||.+.++..+||..++..+|+. ..+|..+.++|++||+++.
T Consensus 83 lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~e~~~~y~~~~~~l~~~~~~~F~~LPlaai 162 (321)
T cd07420 83 VFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTKEVMSKYKLHGKKILRLLEDVFSWLPLATI 162 (321)
T ss_pred EEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHHHHHHHhCccHHHHHHHHHHHHHhCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999984 6899999999999999999
Q ss_pred EcCcEEEEecCCCCCCCCHHHhhccccC
Q 029935 156 IESQVFCLHGGLSPSLDTLDNIRALDRI 183 (185)
Q Consensus 156 i~~~~l~vHaGi~p~~~~~~~i~~i~R~ 183 (185)
++++++|||||++| ...+++|+.|+|+
T Consensus 163 i~~~i~cvHGGi~~-~~~l~~i~~i~r~ 189 (321)
T cd07420 163 IDNKILVVHGGISD-STDLDLLDKIDRH 189 (321)
T ss_pred EcCCEEEEeCCCCC-ccCHHHHHhhhcc
Confidence 99999999999987 4678999999984
No 3
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-43 Score=272.90 Aligned_cols=180 Identities=67% Similarity=1.167 Sum_probs=176.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccC
Q 029935 6 DLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVD 85 (185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vd 85 (185)
.++++++-++.++.+|+.|+..||+.++++|..|.++.|.+.++.|+|||||++.+|..+++..+..|+..+||+||+||
T Consensus 5 d~d~wi~~vk~ckyLpE~elk~LCe~v~d~L~eEsNvqPV~tPVTvCGDIHGQFyDL~eLFrtgG~vP~tnYiFmGDfVD 84 (306)
T KOG0373|consen 5 DLDQWIETVKKCKYLPENELKRLCEMVKDILMEESNVQPVSTPVTVCGDIHGQFYDLLELFRTGGQVPDTNYIFMGDFVD 84 (306)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCccccCCCeeEeeccchhHHHHHHHHHhcCCCCCcceEEeccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEec
Q 029935 86 RGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHG 165 (185)
Q Consensus 86 rG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 165 (185)
||..|+|++.+++.|+.+||.++.++|||||..-+...|||++||..+||+...|+...+.|+.|+++++++++++||||
T Consensus 85 RGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYGFydECq~KYGnan~wkycckVFD~LtlaAiID~~vLCVHG 164 (306)
T KOG0373|consen 85 RGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYGFYDECQNKYGNANVWKYCCKVFDFLTLAAIIDEKVLCVHG 164 (306)
T ss_pred cccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhhhHHHHHhhcCCchHHHHHHHHHhhhhHHHHhcCcEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHhhccccCCC
Q 029935 166 GLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 166 Gi~p~~~~~~~i~~i~R~~~ 185 (185)
|++|+...++||+.|.|.+|
T Consensus 165 GLSPdirtlDqir~i~R~qE 184 (306)
T KOG0373|consen 165 GLSPDIRTLDQIRLIERNQE 184 (306)
T ss_pred CCCccceeHHHHHhHHhhcc
Confidence 99999999999999999875
No 4
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=100.00 E-value=3.1e-42 Score=281.98 Aligned_cols=179 Identities=78% Similarity=1.308 Sum_probs=172.0
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCC
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDR 86 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdr 86 (185)
++++++++.++..++++++..||++|+++++++|++++...+++|+||||||+.+|.++++..++.+.+++|||||||||
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~dL~~ll~~~~~~~~~~~lfLGDyVDR 81 (285)
T cd07415 2 LDKWIEQLKKCELLPESEVKSLCEKAKEILVKESNVQRVRSPVTVCGDIHGQFYDLLELFRVGGDPPDTNYLFLGDYVDR 81 (285)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCEEecCCCEEEEEeCCCCHHHHHHHHHHcCCCCCCeEEEEeEECCC
Confidence 67899999999999999999999999999999999999999999999999999999999999998888999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEecC
Q 029935 87 GYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGG 166 (185)
Q Consensus 87 G~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaG 166 (185)
|+++.|++.++..++..+|.+++++|||||...++..++|..++..+|+...+|+.+.++|++||+++.++++++|||||
T Consensus 82 G~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~~e~~~~y~~~~l~~~~~~~f~~lPlaaii~~~i~cvHgG 161 (285)
T cd07415 82 GYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFYDECLRKYGNANVWKYCTDLFDYLPLAALIDNQIFCVHGG 161 (285)
T ss_pred CcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchhHHHHHhcCchHHHHHHHHHHHHhHHHhEeCCeEEEEcCC
Confidence 99999999999999999999999999999999999999999999999987789999999999999999999999999999
Q ss_pred CCCCCCCHHHhhccccCCC
Q 029935 167 LSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 167 i~p~~~~~~~i~~i~R~~~ 185 (185)
++|.....++|++|+||.+
T Consensus 162 i~p~~~~~~~i~~i~r~~~ 180 (285)
T cd07415 162 LSPSIDTLDQIRAIDRFQE 180 (285)
T ss_pred CCCCcccHHHhhcccCCCC
Confidence 9999999999999999863
No 5
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=7.1e-42 Score=281.57 Aligned_cols=179 Identities=60% Similarity=1.109 Sum_probs=172.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCC
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDR 86 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdr 86 (185)
++++++++++...++++++..||++|.++++++|++++...+++|+||||||+.+|.++++..+..+.++++||||||||
T Consensus 3 ~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDIHG~~~~L~~l~~~~~~~~~~~~lfLGDyVDR 82 (303)
T PTZ00239 3 IDRHIATLLNGGCLPERDLKLICERAKEIFLEESNVQPVRAPVNVCGDIHGQFYDLQALFKEGGDIPNANYIFIGDFVDR 82 (303)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEeeeEcCC
Confidence 78899999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred CCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEecC
Q 029935 87 GYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGG 166 (185)
Q Consensus 87 G~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaG 166 (185)
|+.+.|++.++..++..+|.+++++|||||...++..++|..++.++|+....|+.+.++|++||+++.++++++|||||
T Consensus 83 G~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~ky~~~~~~~~~~~~f~~LPlaaii~~~i~cvHgG 162 (303)
T PTZ00239 83 GYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFYEEILRKYGNSNPWRLFMDVFDCLPLAALIEGQILCVHGG 162 (303)
T ss_pred CCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChHHHHHHHhcChhHHHHHHHHHHhCchheEEcCeEEEEcCc
Confidence 99999999999999999999999999999999999999999999999988788999999999999999999999999999
Q ss_pred CCCCCCCHHHhhccccCCC
Q 029935 167 LSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 167 i~p~~~~~~~i~~i~R~~~ 185 (185)
++|....+++|+.|.||.+
T Consensus 163 i~p~~~~l~~i~~i~r~~~ 181 (303)
T PTZ00239 163 LSPDMRTIDQIRTIDRKIE 181 (303)
T ss_pred cCcccccHhhhccccCCCC
Confidence 9999999999999999853
No 6
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=100.00 E-value=1.4e-41 Score=280.62 Aligned_cols=178 Identities=48% Similarity=0.864 Sum_probs=170.0
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccC
Q 029935 6 DLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVD 85 (185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vd 85 (185)
+++.+.++++++.+++++++..||++|+++++++|++++++.+++|+||||||+.+|.++++..+.++.+++||||||||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~e~~l~~i~~~i~ViGDIHG~~~dL~~l~~~~g~~~~~~ylFLGDyVD 81 (305)
T cd07416 2 RIDVLKAHFMREGRLSEEDALRIITEGAEILRQEPNLLRIEAPVTVCGDIHGQFYDLLKLFEVGGSPANTRYLFLGDYVD 81 (305)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCeEccCCCEEEEEeCCCCHHHHHHHHHhcCCCCCceEEEECCccC
Confidence 47889999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEec
Q 029935 86 RGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHG 165 (185)
Q Consensus 86 rG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHa 165 (185)
||+.|.|++.++..++..+|.+++++|||||...++..++|..++..+| ...+|+.+.++|++||+++.++++++||||
T Consensus 82 RG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~y-~~~l~~~~~~~f~~LPlaaii~~~i~~vHG 160 (305)
T cd07416 82 RGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMEAFDCLPLAALMNQQFLCVHG 160 (305)
T ss_pred CCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchhHHHHhc-cHHHHHHHHHHHhhccceeEEcCCEEEEcC
Confidence 9999999999999999999999999999999998888899988888888 467889999999999999999999999999
Q ss_pred CCCCCCCCHHHhhccccCC
Q 029935 166 GLSPSLDTLDNIRALDRIQ 184 (185)
Q Consensus 166 Gi~p~~~~~~~i~~i~R~~ 184 (185)
|++|.+..+++|++|+|+.
T Consensus 161 Gi~p~~~~l~~i~~i~r~~ 179 (305)
T cd07416 161 GLSPELKTLDDIRKLDRFR 179 (305)
T ss_pred CCCcccccHHHhcccCCCC
Confidence 9999999999999999975
No 7
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=100.00 E-value=8.8e-41 Score=276.15 Aligned_cols=179 Identities=48% Similarity=0.967 Sum_probs=169.2
Q ss_pred HHHHHHHHHHcCC--------CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeE
Q 029935 6 DLDRQIEHLMQCK--------PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNY 77 (185)
Q Consensus 6 ~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~l 77 (185)
.++++++++.... .++++++.+||+++.++++++|.+++.+.+++|+||||||+.+|.++++..++++.+++
T Consensus 10 ~~~~~i~~~~~~~~~~~~~~~~l~~~~i~~l~~~~~~il~~ep~ll~i~~~i~vvGDIHG~~~dL~~l~~~~g~~~~~~y 89 (320)
T PTZ00480 10 DVDNIIERLLSVRGSKPGKNVNLTEAEVRGLCIKARDIFISQPILLELEAPLKICGDVHGQYFDLLRLFEYGGYPPESNY 89 (320)
T ss_pred CHHHHHHHHHhccccCccccCCCCHHHHHHHHHHHHHHHHhCCceEecCCCeEEEeecccCHHHHHHHHHhcCCCCcceE
Confidence 3788888888654 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEc
Q 029935 78 LFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIE 157 (185)
Q Consensus 78 v~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~ 157 (185)
||||||||||+.+.|++.++..++..+|.+++++|||||...++..++|..++..+|+ ..+|..+.++|++||+++.++
T Consensus 90 lfLGDyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e~~~~y~-~~l~~~~~~~F~~LPlaAiI~ 168 (320)
T PTZ00480 90 LFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYT-IKLWKTFTDCFNCLPVAALID 168 (320)
T ss_pred EEeceecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHHHHhhcC-HHHHHHHHHHHHhccHhheec
Confidence 9999999999999999999999999999999999999999999999999999999994 679999999999999999999
Q ss_pred CcEEEEecCCCCCCCCHHHhhccccCCC
Q 029935 158 SQVFCLHGGLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 158 ~~~l~vHaGi~p~~~~~~~i~~i~R~~~ 185 (185)
++++|||||++|....+++|++|+||.+
T Consensus 169 ~~i~cvHGGI~p~~~~l~~i~~i~rp~~ 196 (320)
T PTZ00480 169 EKILCMHGGLSPELSNLEQIRRIMRPTD 196 (320)
T ss_pred CcEEEEcCCcCcccCCHHHHhcccCCCC
Confidence 9999999999999999999999999853
No 8
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=100.00 E-value=1.2e-40 Score=273.61 Aligned_cols=178 Identities=47% Similarity=0.969 Sum_probs=166.5
Q ss_pred HHHHHHHHHcCC--------CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEE
Q 029935 7 LDRQIEHLMQCK--------PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYL 78 (185)
Q Consensus 7 ~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv 78 (185)
++++++++.... .++++++.+||++++++++++|++++.+.+++|+||||||+.+|.++++..++++.+++|
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~il~~ep~~l~i~~~i~viGDIHG~~~~L~~l~~~~~~~~~~~~l 81 (293)
T cd07414 2 IDSIIERLLEVRGSRPGKNVQLTEAEIRGLCLKSREIFLSQPILLELEAPLKICGDIHGQYYDLLRLFEYGGFPPESNYL 81 (293)
T ss_pred HHHHHHHHHhccccCCcccCCCCHHHHHHHHHHHHHHHHhCCCeEecCCceEEEEecCCCHHHHHHHHHhcCCCCcceEE
Confidence 456677777654 689999999999999999999999999999999999999999999999999998899999
Q ss_pred EeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcC
Q 029935 79 FMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIES 158 (185)
Q Consensus 79 ~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~ 158 (185)
|||||||||+.+.|++.++..++..+|.+++++|||||...++..++|..++..+|+ ..+|..+.++|++||+++.+++
T Consensus 82 fLGDyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaa~i~~ 160 (293)
T cd07414 82 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYN-IKLWKTFTDCFNCLPVAAIIDE 160 (293)
T ss_pred EEeeEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhHHHHhhh-HHHHHHHHHHHHHhHHHHhhCC
Confidence 999999999999999999999999999999999999999999999999999988884 6789999999999999999899
Q ss_pred cEEEEecCCCCCCCCHHHhhccccCCC
Q 029935 159 QVFCLHGGLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 159 ~~l~vHaGi~p~~~~~~~i~~i~R~~~ 185 (185)
+++|||||++|...++++|+.++||.+
T Consensus 161 ~i~cvHgGi~p~~~~l~~i~~i~r~~~ 187 (293)
T cd07414 161 KIFCMHGGLSPDLQSMEQIRRIMRPTD 187 (293)
T ss_pred cEEEEccCCCcccCcHHHHhcccCCCC
Confidence 999999999999999999999999853
No 9
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=100.00 E-value=1.7e-40 Score=272.50 Aligned_cols=180 Identities=38% Similarity=0.781 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCe
Q 029935 5 ADLDRQIEHLMQCK--------PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTN 76 (185)
Q Consensus 5 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~ 76 (185)
+-++++++++.+.. .++++++.+||+++++++.+||++++...+++|+||||||+.+|.++++.+++++.++
T Consensus 2 ~~~~~~i~~~~~~~~~~~~~~~~i~~~~i~~l~~~~~~il~~e~~ll~i~~p~~ViGDIHG~~~~L~~l~~~~~~~~~~~ 81 (294)
T PTZ00244 2 SLVQTLIEKMLTVKGNRTQRQILIREEDIRAVLTEVREIFMSQPMLLEIRPPVRVCGDTHGQYYDLLRIFEKCGFPPYSN 81 (294)
T ss_pred chHHHHHHHHHhcccCCCccccCCCHHHHHHHHHHHHHHHHhCCCeEeccCCceeeccCCCCHHHHHHHHHHcCCCCccc
Confidence 34566666666644 6889999999999999999999999999999999999999999999999999988889
Q ss_pred EEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEE
Q 029935 77 YLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALI 156 (185)
Q Consensus 77 lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i 156 (185)
++|||||||||+.|.|++.++..++..+|.+++++|||||...++..++|..++..+|+ ..+|+.+.++|++||+++.+
T Consensus 82 ~lfLGDyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~y~-~~l~~~~~~~f~~lPlaaii 160 (294)
T PTZ00244 82 YLFLGDYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFFDDVKRRYN-IKLFKAFTDVFNTMPVCCVI 160 (294)
T ss_pred EEEeeeEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChHHHHHHHhh-HHHHHHHHHHHHhCchheEe
Confidence 99999999999999999999999999999999999999999999999999999999995 67899999999999999999
Q ss_pred cCcEEEEecCCCCCCCCHHHhhccccCCC
Q 029935 157 ESQVFCLHGGLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 157 ~~~~l~vHaGi~p~~~~~~~i~~i~R~~~ 185 (185)
+++++|||||++|.+..+++++.|+||.+
T Consensus 161 ~~~il~vHgGi~p~~~~l~~i~~i~rp~~ 189 (294)
T PTZ00244 161 SEKIICMHGGLSPDLTSLASVNEIERPCD 189 (294)
T ss_pred cCeeEEEcCCCCchhhHHHHhhhhccccC
Confidence 89999999999999999999999999853
No 10
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=100.00 E-value=5.6e-40 Score=267.42 Aligned_cols=164 Identities=54% Similarity=1.036 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHH
Q 029935 20 LPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVA 99 (185)
Q Consensus 20 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~ 99 (185)
++++++..||+++.++++++|++++.+++++|+||||||+.+|.++++..+..+.+++||||||||||+++.|++.+++.
T Consensus 1 ~~~~~i~~l~~~~~~il~~e~~~~~i~~~i~vvGDiHG~~~~l~~ll~~~~~~~~~~~vfLGD~VDrG~~s~e~l~~l~~ 80 (271)
T smart00156 1 LYAEEILELLREVKEIFRQEPNLVEVSAPVTVCGDIHGQFDDLLRLFDLNGPPPDTNYVFLGDYVDRGPFSIEVILLLFA 80 (271)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCeEEeCCCEEEEEeCcCCHHHHHHHHHHcCCCCCceEEEeCCccCCCCChHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEecCCCCCCCCHHHhhc
Q 029935 100 LKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNIRA 179 (185)
Q Consensus 100 l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~p~~~~~~~i~~ 179 (185)
++..+|.+++++|||||...++..++|..++..+|+ ..+|+.+.++|++||+++.++++++|||||++|...++++|++
T Consensus 81 lk~~~p~~v~llrGNHE~~~~~~~~gf~~e~~~~~~-~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~~~l~~i~~ 159 (271)
T smart00156 81 LKILYPNRVVLLRGNHESRSMNEIYGFYDECKRKYG-EEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDLTTLDDIRK 159 (271)
T ss_pred HHhcCCCCEEEEeccccHHHHHHhccchhhhhhhcC-HHHHHHHHHHHhhChhheEEcCeEEEEecCCCCccCCHHHHhc
Confidence 999999999999999999999988999999999985 6899999999999999999988999999999999999999999
Q ss_pred cccCC
Q 029935 180 LDRIQ 184 (185)
Q Consensus 180 i~R~~ 184 (185)
|+||.
T Consensus 160 i~r~~ 164 (271)
T smart00156 160 LKRPQ 164 (271)
T ss_pred ccCCC
Confidence 99985
No 11
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=274.73 Aligned_cols=167 Identities=51% Similarity=1.008 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcC-CCCCCeEEEeccccCCCCCcHHHHHHH
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGG-NAPDTNYLFMGDYVDRGYYSVETVTLL 97 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~-~~~~~~lv~lGD~vdrG~~~~e~l~~l 97 (185)
.+++.|+.+++.++.+++..+|+++..+.+|.|+|||||++.+|.+++...+ +++..+++|||||+|||++|+|++.++
T Consensus 31 ~l~~~ei~~l~~~~~~if~~~~~l~e~~aPV~i~GDiHGq~~DLlrlf~~~g~~pp~~~ylFLGDYVDRG~~slE~i~LL 110 (331)
T KOG0374|consen 31 PLSKSEIIKLCDKAREIFLSQPTLLELSAPVKIVGDIHGQFGDLLRLFDLLGSFPPDQNYVFLGDYVDRGKQSLETICLL 110 (331)
T ss_pred eccHHHHHHHHHHHHHHhcCCCceeecCCCEEEEccCcCCHHHHHHHHHhcCCCCCcccEEEecccccCCccceEEeehh
Confidence 4889999999999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEecCCCCCCCCHHHh
Q 029935 98 VALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPSLDTLDNI 177 (185)
Q Consensus 98 ~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~p~~~~~~~i 177 (185)
.+++.+||++++++|||||.+.++..|||++|+.++|+....|+.+.+.|+.||+++.++++++|+|||++|.....+||
T Consensus 111 ~a~Ki~yp~~~~lLRGNHE~~~in~~yGFydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~~~~~i 190 (331)
T KOG0374|consen 111 FALKIKYPENVFLLRGNHECASINRIYGFYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLKSLDQI 190 (331)
T ss_pred hhhhhhCCceEEEeccccccccccceeeeHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhcChHHH
Confidence 99999999999999999999999999999999999997778999999999999999999999999999999999999999
Q ss_pred hccccCCC
Q 029935 178 RALDRIQE 185 (185)
Q Consensus 178 ~~i~R~~~ 185 (185)
+.|+||.+
T Consensus 191 ~~i~rp~~ 198 (331)
T KOG0374|consen 191 RAIPRPTD 198 (331)
T ss_pred hhccCCcC
Confidence 99999964
No 12
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=100.00 E-value=7.5e-40 Score=271.10 Aligned_cols=182 Identities=36% Similarity=0.661 Sum_probs=167.1
Q ss_pred ChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCC----CEEEEeCCCCCHHHHHHHHHhcCCCC-CCeE
Q 029935 3 SQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKC----PVTVCGDIHGQFHDLVELFRIGGNAP-DTNY 77 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~----~i~vigDIHG~~~~l~~ll~~~~~~~-~~~l 77 (185)
|.+.+++++++++++..++++++.+||++|.++++++|++++... +++||||||||+.+|.++++..++++ .+++
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~il~~ep~l~~i~~p~~~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~y 91 (316)
T cd07417 12 TLEFVKEMIEWFKDQKKLHKKYAYQILLQVKELLKKLPSLVEITIPEGEKITVCGDTHGQFYDLLNIFELNGLPSETNPY 91 (316)
T ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhCCcceeccCCCCceeEEeecccCCHHHHHHHHHhcCCCCccCeE
Confidence 457899999999999999999999999999999999999987764 49999999999999999999988765 4589
Q ss_pred EEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEc
Q 029935 78 LFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIE 157 (185)
Q Consensus 78 v~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~ 157 (185)
||||||||||+.|.|++.+++.++..+|++++++|||||...++..++|..++..+|+ ..+|+.+.++|++||++++++
T Consensus 92 lFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf~~e~~~k~~-~~l~~~~~~~f~~LPlaaii~ 170 (316)
T cd07417 92 LFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGFEGEVKAKYN-EQMFDLFSEVFNWLPLAHLIN 170 (316)
T ss_pred EEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhhcchhhhccc-HHHHHHHHHHHHhchHhheeC
Confidence 9999999999999999999999999999999999999999999988888888888884 678899999999999999998
Q ss_pred CcEEEEecCC-CCCCCCHHHhhccccCCC
Q 029935 158 SQVFCLHGGL-SPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 158 ~~~l~vHaGi-~p~~~~~~~i~~i~R~~~ 185 (185)
++++|||||+ +|....++++++|+|+.+
T Consensus 171 ~~~~~vHgGi~~~~~~~l~~i~~i~r~~~ 199 (316)
T cd07417 171 GKVLVVHGGLFSDDGVTLDDIRKIDRFRQ 199 (316)
T ss_pred CeEEEEccccccCCCccHHHhhcccCCCC
Confidence 8999999999 456888999999999853
No 13
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=100.00 E-value=4.7e-39 Score=270.12 Aligned_cols=181 Identities=38% Similarity=0.618 Sum_probs=165.2
Q ss_pred ChhHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHhhcccCcceecC----CCEEEEeCCCCCHHHHHHHHHh
Q 029935 3 SQADLDRQIEHLMQC----------KPLPEQEVNILCEQARAILVEEWNVQPVK----CPVTVCGDIHGQFHDLVELFRI 68 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~~~~~~~~~~----~~i~vigDIHG~~~~l~~ll~~ 68 (185)
|.+.+++|++.++.. ..++.+++..||++|.++++++|+++.++ .+++|||||||++.+|.++++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~a~~il~~ep~ll~i~~~~~~~i~VvGDIHG~~~dL~~ll~~ 87 (377)
T cd07418 8 TNEWVHELMSVFEWSSRNLPPSELPSVLPVNVFDSLVLTAHKILHREPNCVRIDVEDVCEVVVVGDVHGQLHDVLFLLED 87 (377)
T ss_pred CHHHHHHHHHHHHhcccccCchhhccCCCHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCEEEEEecCCCHHHHHHHHHH
Confidence 457788999999777 45789999999999999999999999887 7999999999999999999999
Q ss_pred cCCCCC-CeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCC--HHHHHHHHH
Q 029935 69 GGNAPD-TNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGN--ANVWKHFTD 145 (185)
Q Consensus 69 ~~~~~~-~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 145 (185)
.++.+. +.+||||||||||++|.|++.++..++..+|.+++++|||||...++..++|..++..+|+. ..+|+.+.+
T Consensus 88 ~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~Gf~~E~~~~y~~~~~~l~~~~~~ 167 (377)
T cd07418 88 AGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYGFEQEVLTKYGDKGKHVYRKCLG 167 (377)
T ss_pred hCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcccchhhhhhcCchHHHHHHHHHH
Confidence 887765 46999999999999999999999999999999999999999999999999999999999976 478999999
Q ss_pred HhhcCCceEEEcCcEEEEecCCC---------------------------CCCCCHHHhhccccC
Q 029935 146 LFDYLPLTALIESQVFCLHGGLS---------------------------PSLDTLDNIRALDRI 183 (185)
Q Consensus 146 ~~~~lP~~~~i~~~~l~vHaGi~---------------------------p~~~~~~~i~~i~R~ 183 (185)
+|++||+++.++++++|||||++ |...++++|++++|+
T Consensus 168 ~f~~LPlaavI~~~i~cvHGGI~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~sl~~i~~i~r~ 232 (377)
T cd07418 168 CFEGLPLASIIAGRVYTAHGGLFRSPSLPKRKKQKGKNRRVLLLEPESESLKLGTLDDLMKARRS 232 (377)
T ss_pred HHHhCCcEEEECCCEEEECCCcCCcccccccccccccccccccccccccCCCCCCHHHHhhCCCC
Confidence 99999999999889999999994 445689999999996
No 14
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=100.00 E-value=1e-38 Score=264.50 Aligned_cols=167 Identities=43% Similarity=0.835 Sum_probs=155.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCC--------CeEEEeccccCCCCC
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPD--------TNYLFMGDYVDRGYY 89 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~--------~~lv~lGD~vdrG~~ 89 (185)
..++++++..||+++.+++++||++++...+++||||||||+++|.++++..+.++. .++|||||||||||+
T Consensus 19 ~~~~~~~i~~l~~~~~~il~~e~~~~~i~~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~~~vfLGDyVDRGp~ 98 (311)
T cd07419 19 FFFNWNEILELCDAAEDIFKQEPMVLRLRAPIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYIDYLFLGDYVDRGSN 98 (311)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCeEeeCCCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCceEEEECCccCCCCC
Confidence 468899999999999999999999999999999999999999999999998876543 479999999999999
Q ss_pred cHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCC-----HHHHHHHHHHhhcCCceEEEcCcEEEEe
Q 029935 90 SVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGN-----ANVWKHFTDLFDYLPLTALIESQVFCLH 164 (185)
Q Consensus 90 ~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~lP~~~~i~~~~l~vH 164 (185)
|.||+.++..++..+|.+++++|||||.+.++..++|..++..+|+. ...|..+.++|++||+++.++++++|||
T Consensus 99 s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e~~~~~~~~~~~~~~l~~~~~~~f~~LPl~avi~~~~l~vH 178 (311)
T cd07419 99 SLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREECKERLGEDPNDGDSVWRRINRLFEWLPLAAIIEDKILCMH 178 (311)
T ss_pred hHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHHHHHhcCccchhhHHHHHHHHHHHHhCchhheecccEEEEc
Confidence 99999999999999999999999999999999999998888888865 3688999999999999998888999999
Q ss_pred cCCCCCCCCHHHhhccccCC
Q 029935 165 GGLSPSLDTLDNIRALDRIQ 184 (185)
Q Consensus 165 aGi~p~~~~~~~i~~i~R~~ 184 (185)
||++|....+++|+.|.||.
T Consensus 179 gGi~p~~~~l~~i~~i~r~~ 198 (311)
T cd07419 179 GGIGRSINHVSEIEDLKRPL 198 (311)
T ss_pred cCCCCCCCcHHHHhhcCCCC
Confidence 99999999999999999985
No 15
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-39 Score=253.47 Aligned_cols=181 Identities=82% Similarity=1.342 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEecccc
Q 029935 5 ADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYV 84 (185)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~v 84 (185)
..++.+++++..++++++.++..+++.++++|.++.++.+...++.|+||+||++.+|.++++.-+..++..++|+||||
T Consensus 18 ~~vd~~ie~L~~ck~lse~~v~~lc~~a~~~L~~e~nV~~v~~pvtvcGDvHGqf~dl~ELfkiGG~~pdtnylfmGDyv 97 (319)
T KOG0371|consen 18 LDVDPWIEQLYKCKPLSEVDVSSLCLLAKEILDKEENVQPVNCPVTVCGDVHGQFHDLIELFKIGGLAPDTNYLFMGDYV 97 (319)
T ss_pred cccccchHHHHhcCCCccccchhHHHHHHHHHhccccccccccceEEecCcchhHHHHHHHHHccCCCCCcceeeeeeec
Confidence 34788999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred CCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEe
Q 029935 85 DRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLH 164 (185)
Q Consensus 85 drG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vH 164 (185)
|||++|.+++.++..+|.+||.++.+||||||...+.+.|+|+++|.++||+...|+.+.+.|+++|+.+.++++++|.|
T Consensus 98 drGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvygfydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~H 177 (319)
T KOG0371|consen 98 DRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLH 177 (319)
T ss_pred ccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHhhHHHHHhhcccccchHHhhhhhhccchHhhhccceeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred cCCCCCCCCHHHhhccccCCC
Q 029935 165 GGLSPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 165 aGi~p~~~~~~~i~~i~R~~~ 185 (185)
||++|+....++++.+.|.++
T Consensus 178 GgLspsi~tld~~r~~dr~~e 198 (319)
T KOG0371|consen 178 GGLSPSIDTLDLIRLLDRIQE 198 (319)
T ss_pred CCcCcccchHHHHHHHHHhhc
Confidence 999999999999999998654
No 16
>KOG0375 consensus Serine-threonine phosphatase 2B, catalytic subunit [General function prediction only]
Probab=100.00 E-value=8.4e-37 Score=249.63 Aligned_cols=177 Identities=47% Similarity=0.874 Sum_probs=167.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCC
Q 029935 8 DRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRG 87 (185)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG 87 (185)
+-+=.++..-..+.++..+.++.++..+|++|+++++++.+|.|+|||||++.+|.++++..+.+...+++|||||||||
T Consensus 49 ~~Lr~Hf~~EGrl~ee~alrIi~~~a~llr~Eknmi~v~APiTVCGDIHGQf~DLmKLFEVGG~PA~t~YLFLGDYVDRG 128 (517)
T KOG0375|consen 49 DVLRNHFIKEGRLEEEQALRIINEGAALLRQEKNMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRG 128 (517)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCCceEeccCCeeEecccchHHHHHHHHHHccCCcccceeEeeccccccc
Confidence 33445666777899999999999999999999999999999999999999999999999999888889999999999999
Q ss_pred CCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEEEecCC
Q 029935 88 YYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIESQVFCLHGGL 167 (185)
Q Consensus 88 ~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi 167 (185)
..|+||+-+|.+||+.+|....++|||||..-+...+.|-.+|..+| +..+++...+-|+.||+++..++.++|||||+
T Consensus 129 yFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTFKqEc~iKY-se~vYdaCmesFd~LPLAAlmNqQflCVHGGl 207 (517)
T KOG0375|consen 129 YFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTFKQECKIKY-SERVYDACMESFDCLPLAALMNQQFLCVHGGL 207 (517)
T ss_pred eeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhHHHHHhHhc-cHHHHHHHHHHhccchHHHHhcCceEEecCCC
Confidence 99999999999999999999999999999999999999999999999 68899999999999999999899999999999
Q ss_pred CCCCCCHHHhhccccCCC
Q 029935 168 SPSLDTLDNIRALDRIQE 185 (185)
Q Consensus 168 ~p~~~~~~~i~~i~R~~~ 185 (185)
+|....+++|++|+|.++
T Consensus 208 SPEi~tl~DIr~l~RF~E 225 (517)
T KOG0375|consen 208 SPEIHTLDDIRKLDRFKE 225 (517)
T ss_pred CcccccHHHHHhhhhccC
Confidence 999999999999999875
No 17
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=99.96 E-value=8.8e-29 Score=200.68 Aligned_cols=125 Identities=22% Similarity=0.337 Sum_probs=101.3
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYG 125 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~ 125 (185)
|+++||||||||+++|+++|+++++. ..|++||+||+|||||+|.+|++++.++. .++++|+||||.++++...+
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~----~~~~~VlGNHD~~lL~~~~g 76 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLG----DAVRLVLGNHDLHLLAVFAG 76 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcC----CCeEEEEChhHHHHHHHhcC
Confidence 57999999999999999999999875 46899999999999999999999999875 46889999999999886655
Q ss_pred CH----HHHHHHhCCHHHHHHHHHHhhcCCceEEEc-CcEEEEecCCCCCCCCHH
Q 029935 126 FY----DECLRKYGNANVWKHFTDLFDYLPLTALIE-SQVFCLHGGLSPSLDTLD 175 (185)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~p~~~~~~ 175 (185)
+. ......+-.....+...+|++++|+..... .++++||||++|.|+..+
T Consensus 77 ~~~~~~~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~l~~ 131 (279)
T TIGR00668 77 ISRNKPKDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWDLQT 131 (279)
T ss_pred CCccCchHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCcHHH
Confidence 31 122222222334567899999999987653 469999999999997443
No 18
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.96 E-value=2.6e-28 Score=196.51 Aligned_cols=123 Identities=21% Similarity=0.403 Sum_probs=99.6
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA---------PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~---------~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
||++||||||||+++|.++|+.+++. +.+++||+||+|||||+|.+|+++++++. .+.++++|+||||.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~--~~~~~~~l~GNHE~ 78 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELV--EKKAAYYVPGNHCN 78 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHh--hCCCEEEEeCccHH
Confidence 58999999999999999999998764 46799999999999999999999999885 34579999999999
Q ss_pred hhhhhhhC-------CHHHHHHHhCC------HHHHHHHHHHhhcCCceEEEc-CcEEEEecCCCCCC
Q 029935 118 RQITQVYG-------FYDECLRKYGN------ANVWKHFTDLFDYLPLTALIE-SQVFCLHGGLSPSL 171 (185)
Q Consensus 118 ~~~~~~~~-------~~~~~~~~~~~------~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~p~~ 171 (185)
++++...+ ...++..+|.. ..+.+.+.+|++++|++..++ ++++|||||++|..
T Consensus 79 ~~l~~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~ 146 (245)
T PRK13625 79 KLYRFFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDY 146 (245)
T ss_pred HHHHHHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHh
Confidence 98865432 12344455532 235577889999999988763 67999999998873
No 19
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.96 E-value=5e-29 Score=208.36 Aligned_cols=178 Identities=31% Similarity=0.597 Sum_probs=159.3
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceec----CCCEEEEeCCCCCHHHHHHHHHhcCCCCC-CeEEE
Q 029935 5 ADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPV----KCPVTVCGDIHGQFHDLVELFRIGGNAPD-TNYLF 79 (185)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----~~~i~vigDIHG~~~~l~~ll~~~~~~~~-~~lv~ 79 (185)
+.++.+++.++..+++.+..++.++.++++.|++-|++.++ +..|.|+||+||.+++|.-++-+-+.+.. .-+||
T Consensus 119 ~~i~~lieaFk~kq~LH~kYVl~iL~EakK~lkqmPnis~isTs~S~qVTiCGDLHGklDDL~~I~yKNGlPS~~npYvF 198 (631)
T KOG0377|consen 119 NHIDLLIEAFKKKQRLHPKYVLLILREAKKSLKQMPNISRISTSVSQQVTICGDLHGKLDDLLVILYKNGLPSSSNPYVF 198 (631)
T ss_pred hHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHhCCCCCccccccccceEEeccccccccceEEEEecCCCCCCCCCeee
Confidence 56899999999999999999999999999999999999765 45799999999999999988888777654 47999
Q ss_pred eccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCC--HHHHHHHHHHhhcCCceEEEc
Q 029935 80 MGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGN--ANVWKHFTDLFDYLPLTALIE 157 (185)
Q Consensus 80 lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lP~~~~i~ 157 (185)
.||+||||..|+|+|-.|+.+..-+|+.+++-|||||..+++..|||..|...+|.. ..+.....++++|||++.+++
T Consensus 199 NGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~kEv~~KYk~~~k~Ilr~leevy~WLPi~tiid 278 (631)
T KOG0377|consen 199 NGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIKEVESKYKRHGKRILRFLEEVYRWLPIGTIID 278 (631)
T ss_pred cCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHHHHHHHhhhcccHHHHHHHHHHHhcchhhhcc
Confidence 999999999999999999999999999999999999999999999999999998863 467778889999999999999
Q ss_pred CcEEEEecCCCCCCCCHHHhhccccC
Q 029935 158 SQVFCLHGGLSPSLDTLDNIRALDRI 183 (185)
Q Consensus 158 ~~~l~vHaGi~p~~~~~~~i~~i~R~ 183 (185)
.++++||||++.. ..++-+.+|.|-
T Consensus 279 ~~ilvvHGGiSd~-Tdl~ll~kIeR~ 303 (631)
T KOG0377|consen 279 SRILVVHGGISDS-TDLDLLDKIERG 303 (631)
T ss_pred cceEEEecCcccc-hhHHHHhhhhcc
Confidence 9999999999654 356666666663
No 20
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=99.96 E-value=3.1e-28 Score=196.72 Aligned_cols=122 Identities=24% Similarity=0.353 Sum_probs=99.2
Q ss_pred EEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCH
Q 029935 49 VTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFY 127 (185)
Q Consensus 49 i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~ 127 (185)
++||||||||+++|+++++.+++. +.|++||+||+|||||+|.+|++++.+++ .++++|+||||.+++...++..
T Consensus 1 ~yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~----~~v~~VlGNHD~~ll~~~~g~~ 76 (257)
T cd07422 1 TYAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLG----DSAKTVLGNHDLHLLAVAAGIK 76 (257)
T ss_pred CEEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcC----CCeEEEcCCchHHHHHHhcCcc
Confidence 589999999999999999999876 57899999999999999999999999886 5799999999999887554422
Q ss_pred ----HHHHHHhCCHHHHHHHHHHhhcCCceEEEcC-cEEEEecCCCCCCCCH
Q 029935 128 ----DECLRKYGNANVWKHFTDLFDYLPLTALIES-QVFCLHGGLSPSLDTL 174 (185)
Q Consensus 128 ----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~l~vHaGi~p~~~~~ 174 (185)
.....++-.....+...+|++++|+...+++ ++++||||++|.|+..
T Consensus 77 ~~~~~~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~~~ 128 (257)
T cd07422 77 KPKKKDTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWSIE 128 (257)
T ss_pred ccccHhHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCCHH
Confidence 1222222222334678899999999998754 7999999999998643
No 21
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=99.95 E-value=9.3e-28 Score=195.72 Aligned_cols=124 Identities=23% Similarity=0.348 Sum_probs=100.3
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYG 125 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~ 125 (185)
|+++||||||||+++|.++++.+++. ..|.+||+||+|||||+|.+|++++.++. .++++|+||||.+++...++
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~----~~~~~VlGNHD~~ll~~~~g 76 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLG----DSAVTVLGNHDLHLLAVAAG 76 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcC----CCeEEEecChhHHHHHhhcC
Confidence 68999999999999999999998864 56899999999999999999999998873 56999999999998776554
Q ss_pred CH----HHHHHHhCCHHHHHHHHHHhhcCCceEEE-cCcEEEEecCCCCCCCCH
Q 029935 126 FY----DECLRKYGNANVWKHFTDLFDYLPLTALI-ESQVFCLHGGLSPSLDTL 174 (185)
Q Consensus 126 ~~----~~~~~~~~~~~~~~~~~~~~~~lP~~~~i-~~~~l~vHaGi~p~~~~~ 174 (185)
.. .....++......+...+|++++|+...+ ++++++||||++|.|+..
T Consensus 77 ~~~~~~~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~~ 130 (275)
T PRK00166 77 IKRNKKKDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDLA 130 (275)
T ss_pred CccccchhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCHH
Confidence 22 12223332223346678999999998876 568999999999998643
No 22
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.95 E-value=2.5e-27 Score=189.49 Aligned_cols=123 Identities=23% Similarity=0.469 Sum_probs=98.4
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCCC----------CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNAP----------DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~~----------~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
||++||||||||+++|+++|+.+++.+ .+++|||||+|||||+|.+|++++.+++.. .++++|+||||
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~--~~~~~v~GNHE 78 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAA--GAALCVPGNHD 78 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhC--CcEEEEECCcH
Confidence 689999999999999999999987652 469999999999999999999999988643 46999999999
Q ss_pred hhhhhhhhCC-------HHHHHHHhC--CHHHHHHHHHHhhcCCceEEEc-CcEEEEecCCCCCC
Q 029935 117 SRQITQVYGF-------YDECLRKYG--NANVWKHFTDLFDYLPLTALIE-SQVFCLHGGLSPSL 171 (185)
Q Consensus 117 ~~~~~~~~~~-------~~~~~~~~~--~~~~~~~~~~~~~~lP~~~~i~-~~~l~vHaGi~p~~ 171 (185)
.++++...+. ..++..++. .....+...+|++.||++..++ ++++|||||+++.+
T Consensus 79 ~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~ 143 (234)
T cd07423 79 NKLYRKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEM 143 (234)
T ss_pred HHHHHHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHh
Confidence 9987643221 122333432 2456677889999999988764 57999999987654
No 23
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.95 E-value=3.4e-27 Score=187.39 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=94.3
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCC--------CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhh
Q 029935 50 TVCGDIHGQFHDLVELFRIGGNA--------PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQIT 121 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~~~~~~--------~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~ 121 (185)
+||||||||+++|+++|+.+++. +.+++|||||||||||+|.+|+++++++... .++++|+||||.+++.
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~--~~~~~l~GNHE~~ll~ 79 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDA--GHALAVMGNHEFNAIA 79 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcC--CCEEEEEccCcHHHHH
Confidence 79999999999999999998764 5689999999999999999999999998633 4799999999999875
Q ss_pred hhhCC------H-----------HHHHHHhC-CHHHHHHHHHHhhcCCceEEEcCcEEEEecCCCCC
Q 029935 122 QVYGF------Y-----------DECLRKYG-NANVWKHFTDLFDYLPLTALIESQVFCLHGGLSPS 170 (185)
Q Consensus 122 ~~~~~------~-----------~~~~~~~~-~~~~~~~~~~~~~~lP~~~~i~~~~l~vHaGi~p~ 170 (185)
...+. . .++.++++ .....+.+.+|+++||++... ++++|||||++++
T Consensus 80 ~~~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~-~~~~~VHAg~~~~ 145 (222)
T cd07413 80 WHTKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDL-GGVRVVHACWDET 145 (222)
T ss_pred hhhCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEE-CCEEEEECCcCHh
Confidence 43221 0 12333332 234457789999999999885 6899999998743
No 24
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.95 E-value=4.1e-27 Score=191.48 Aligned_cols=131 Identities=24% Similarity=0.354 Sum_probs=105.4
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCC------CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCC-cEEEEcCCCchhhh
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNA------PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRD-RITILRGNHESRQI 120 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~------~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~-~v~~l~GNHE~~~~ 120 (185)
++++||||||+++.|+++++.+... ..+.+|||||||||||+|.+|++++.+++..+|. ++++|+||||.+++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 7999999999999999999866422 2457999999999999999999999999887765 68999999998876
Q ss_pred hhhhC-----------------------------------------C----------------------HHHHHHHhCCH
Q 029935 121 TQVYG-----------------------------------------F----------------------YDECLRKYGNA 137 (185)
Q Consensus 121 ~~~~~-----------------------------------------~----------------------~~~~~~~~~~~ 137 (185)
.+... | ..++.++||..
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 53221 0 13456666632
Q ss_pred --------HHHHHHHHHhhcCCceEEEcCcE-------------EEEecCCCCCCCCHHHhhc
Q 029935 138 --------NVWKHFTDLFDYLPLTALIESQV-------------FCLHGGLSPSLDTLDNIRA 179 (185)
Q Consensus 138 --------~~~~~~~~~~~~lP~~~~i~~~~-------------l~vHaGi~p~~~~~~~i~~ 179 (185)
.+.+.+.+|++.||..+.. +++ +|||||+.|+.+..+|.+.
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~-~~~~~~~~~g~~~~~lifVHAGlrPg~pLe~Q~~~ 224 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEE-DDVCIETEEGLKHCKLIAVHAGLEKSNSVEEQLKL 224 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEe-CcccccccccccccceEEEEcccCCCCChHHhhhh
Confidence 2345688999999999884 556 9999999999999999876
No 25
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.94 E-value=1.3e-26 Score=183.48 Aligned_cols=126 Identities=50% Similarity=0.886 Sum_probs=106.0
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHH
Q 029935 50 TVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDE 129 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~ 129 (185)
+|||||||++++|.++++.++..+.+++||+||++||||.+.++++++.+++.. |.++++|+||||.+.++...++..+
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~-~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVDRGPDSVEVIDLLLALKIL-PDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeCCCCCcHHHHHHHHHhcCC-CCcEEEEccCchhhhhhhhcCCcch
Confidence 589999999999999999999888999999999999999999999999988765 7789999999999988765543322
Q ss_pred --------HHHHhCCHHHHHHHHHHhhcCCceEEEcC-cEEEEecCCCCCCCCHHH
Q 029935 130 --------CLRKYGNANVWKHFTDLFDYLPLTALIES-QVFCLHGGLSPSLDTLDN 176 (185)
Q Consensus 130 --------~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~l~vHaGi~p~~~~~~~ 176 (185)
....+.....+....+|+..+|++..++. +++|||||++|.++...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~ 135 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQ 135 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHh
Confidence 12333345677888899999999998865 899999999999876644
No 26
>PHA02239 putative protein phosphatase
Probab=99.94 E-value=6.8e-26 Score=181.18 Aligned_cols=130 Identities=25% Similarity=0.379 Sum_probs=101.5
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC--CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhh
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA--PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVY 124 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~--~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~ 124 (185)
|++++|||||||++.|.++++.+... +.+.+||+||||||||+|.++++.+.++.. .+.++++|+||||.++++...
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~-~~~~~~~l~GNHE~~~l~~~~ 79 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMS-NDDNVVTLLGNHDDEFYNIME 79 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhh-cCCCeEEEECCcHHHHHHHHh
Confidence 68999999999999999999988543 468999999999999999999999988753 345799999999999775431
Q ss_pred C--------------CHHHHHHHhCCH------------------------------HHHHHHHHHhhcCCceEEEcCcE
Q 029935 125 G--------------FYDECLRKYGNA------------------------------NVWKHFTDLFDYLPLTALIESQV 160 (185)
Q Consensus 125 ~--------------~~~~~~~~~~~~------------------------------~~~~~~~~~~~~lP~~~~i~~~~ 160 (185)
+ ...+++.+|+.. .....+..|+++||++... +++
T Consensus 80 ~~~~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~-~~~ 158 (235)
T PHA02239 80 NVDRLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKE-DKY 158 (235)
T ss_pred CchhcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEE-CCE
Confidence 1 113455666421 0123456699999999995 789
Q ss_pred EEEecCCCCCCCCHHHhh
Q 029935 161 FCLHGGLSPSLDTLDNIR 178 (185)
Q Consensus 161 l~vHaGi~p~~~~~~~i~ 178 (185)
+|||||+.|..+..+|..
T Consensus 159 ifVHAGi~p~~~~~~q~~ 176 (235)
T PHA02239 159 IFSHSGGVSWKPVEEQTI 176 (235)
T ss_pred EEEeCCCCCCCChhhCCH
Confidence 999999999987666543
No 27
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.94 E-value=3.8e-26 Score=180.92 Aligned_cols=118 Identities=21% Similarity=0.255 Sum_probs=91.1
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhh
Q 029935 45 VKCPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQV 123 (185)
Q Consensus 45 ~~~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~ 123 (185)
..+|++||||||||+++|+++|+.+++. ..|++|||||+|||||+|.+|++++.+. ++++|+||||.++++..
T Consensus 15 ~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~~------~~~~v~GNHE~~~l~~~ 88 (218)
T PRK11439 15 QWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEEH------WVRAVRGNHEQMALDAL 88 (218)
T ss_pred CCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHcC------CceEeeCchHHHHHHHH
Confidence 3469999999999999999999999876 5789999999999999999999998652 48899999999988654
Q ss_pred hCCHHHHHH--------HhCC--HHHHHHHHHHhhcCCceEEE---cCcEEEEecCCC
Q 029935 124 YGFYDECLR--------KYGN--ANVWKHFTDLFDYLPLTALI---ESQVFCLHGGLS 168 (185)
Q Consensus 124 ~~~~~~~~~--------~~~~--~~~~~~~~~~~~~lP~~~~i---~~~~l~vHaGi~ 168 (185)
.+.....+. .... ...+..+.+|+++||++..+ ++++++||||++
T Consensus 89 ~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p 146 (218)
T PRK11439 89 ASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYP 146 (218)
T ss_pred HCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCC
Confidence 221101111 1111 12345667899999999765 357999999974
No 28
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.92 E-value=8.5e-25 Score=172.06 Aligned_cols=121 Identities=23% Similarity=0.472 Sum_probs=93.3
Q ss_pred EEEeCCCCCHHHHHHHHHhcCC--------CCCCeEEEeccccCCCCCcHHHHHHHHHHHHh---CCCcEEEEcCCCchh
Q 029935 50 TVCGDIHGQFHDLVELFRIGGN--------APDTNYLFMGDYVDRGYYSVETVTLLVALKVR---YRDRITILRGNHESR 118 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~~~~~--------~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~---~p~~v~~l~GNHE~~ 118 (185)
+||||||||+++|+++|+.++. .+.+.+|++||++||||++.+++++++++... .+.++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 5899999999999999998874 35789999999999999999999999998753 456899999999999
Q ss_pred hhhhhhCCHH-HHHHHhC-----CHHHH---HHHHHHhhcCCceEEEcCcEEEEecCCCCCC
Q 029935 119 QITQVYGFYD-ECLRKYG-----NANVW---KHFTDLFDYLPLTALIESQVFCLHGGLSPSL 171 (185)
Q Consensus 119 ~~~~~~~~~~-~~~~~~~-----~~~~~---~~~~~~~~~lP~~~~i~~~~l~vHaGi~p~~ 171 (185)
.+...+.+.. ....... ....+ ..+.+|++++|+...+ ++++|||||++|.|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~-~~~~fvHag~~~~w 141 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKV-NDTLFVHGGLGPLW 141 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEE-CCEEEEeCCcHHHH
Confidence 8864332211 1111100 01111 3458899999999886 57999999998876
No 29
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.91 E-value=9.8e-24 Score=165.79 Aligned_cols=118 Identities=25% Similarity=0.336 Sum_probs=92.5
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYG 125 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~ 125 (185)
+|+++|||||||+.+|+++++.+++. ..+.++++||++||||++.++++++.+ .++++|+||||.+++....+
T Consensus 1 ~ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~------~~~~~v~GNhe~~~~~~~~~ 74 (207)
T cd07424 1 GRDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE------PWFHAVRGNHEQMAIDALRA 74 (207)
T ss_pred CCEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc------CCEEEeECCChHHHHhHhhC
Confidence 58999999999999999999988764 478999999999999999999998865 25899999999998875533
Q ss_pred C--HHHHHHHhCC--------HHHHHHHHHHhhcCCceEEEc---CcEEEEecCCCCC
Q 029935 126 F--YDECLRKYGN--------ANVWKHFTDLFDYLPLTALIE---SQVFCLHGGLSPS 170 (185)
Q Consensus 126 ~--~~~~~~~~~~--------~~~~~~~~~~~~~lP~~~~i~---~~~l~vHaGi~p~ 170 (185)
. ..+.+...+. ...++...+|+++||++..++ +++++||||+++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~ 132 (207)
T cd07424 75 EPLDAVRWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSD 132 (207)
T ss_pred CCcchhHHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcc
Confidence 1 1122222221 224566888999999998763 4699999998655
No 30
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.90 E-value=2.2e-23 Score=165.10 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=87.4
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVY 124 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~ 124 (185)
.+|++||||||||+++|+++++.+.+. ..|++|++||+|||||+|.++++++.+ .++++|+||||.++++...
T Consensus 14 ~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~------~~~~~v~GNHE~~~~~~~~ 87 (218)
T PRK09968 14 YRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ------PWFISVKGNHEAMALDAFE 87 (218)
T ss_pred CCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh------CCcEEEECchHHHHHHHHh
Confidence 359999999999999999999998754 568999999999999999999998864 3589999999999886442
Q ss_pred CCHH--------HHHHHhCCH--HHHHHHHHHhhcCCceEEEc---CcEEEEecCC
Q 029935 125 GFYD--------ECLRKYGNA--NVWKHFTDLFDYLPLTALIE---SQVFCLHGGL 167 (185)
Q Consensus 125 ~~~~--------~~~~~~~~~--~~~~~~~~~~~~lP~~~~i~---~~~l~vHaGi 167 (185)
.-.. +...+.... ........|+++||.+..+. +++++||||+
T Consensus 88 ~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~ 143 (218)
T PRK09968 88 TGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADY 143 (218)
T ss_pred cCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCC
Confidence 1100 111111111 12234566999999988662 4699999997
No 31
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.83 E-value=7.8e-21 Score=161.47 Aligned_cols=180 Identities=37% Similarity=0.686 Sum_probs=158.0
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceec----CCCEEEEeCCCCCHHHHHHHHHhcCCCCC-CeEE
Q 029935 4 QADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPV----KCPVTVCGDIHGQFHDLVELFRIGGNAPD-TNYL 78 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----~~~i~vigDIHG~~~~l~~ll~~~~~~~~-~~lv 78 (185)
.+-++.+++-+.+...++..-+-+|++.+.+++...++++.. ..++.++||.||.+..+..++...+.++. ..++
T Consensus 167 ~e~vk~~~~~~~~~~~L~~k~a~~i~~~~~~~~~~l~~~ve~~~~~d~~~sv~gd~hGqfydl~nif~l~g~Ps~t~~yl 246 (476)
T KOG0376|consen 167 LEFVKTLMEVFKNQKKLPKKYAYSILDLAKTILRKLPSLVEISVPGDVKISVCGDTHGQFYDLLNIFELNGLPSETNPYL 246 (476)
T ss_pred HHHHHHHHHhhhcccccccccceeeHHHHhhHHhcCCcceEeecCCCceEEecCCccccccchhhhHhhcCCCCCccccc
Confidence 455677777788888899999999999999999999998754 56799999999999999999998887664 4899
Q ss_pred EeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcC
Q 029935 79 FMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIES 158 (185)
Q Consensus 79 ~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~ 158 (185)
|.||++|||..+.++...+...+..+|+++++.|||||.-.++..++|..++..+|.. ....-+.+.|.+||++..+++
T Consensus 247 fngdfv~rgs~s~e~~~~~~~~kl~~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte-~~~~~f~~~f~~LPl~~~i~~ 325 (476)
T KOG0376|consen 247 FNGDFVDRGSWSVEVILTLFAFKLLYPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTE-EMFNLFSEVFIWLPLAHLINN 325 (476)
T ss_pred ccCceeeecccceeeeeeehhhcccCCcceeeccCCccchHHHHHhCCCcchhhhhHH-HHHHhhhhhhccccchhhhcC
Confidence 9999999999999999999999999999999999999999999999999998888853 334445588999999999999
Q ss_pred cEEEEecCCC-CCCCCHHHhhccccCC
Q 029935 159 QVFCLHGGLS-PSLDTLDNIRALDRIQ 184 (185)
Q Consensus 159 ~~l~vHaGi~-p~~~~~~~i~~i~R~~ 184 (185)
+++.+|||+. |.-...+++++|.|++
T Consensus 326 ~~~~~hgglf~~~~v~l~d~r~i~r~~ 352 (476)
T KOG0376|consen 326 KVLVMHGGLFSPDGVTLEDFRNIDRFE 352 (476)
T ss_pred ceEEEecCcCCCCCccHHHHHhhhhcc
Confidence 9999999995 4456789999999975
No 32
>PRK09453 phosphodiesterase; Provisional
Probab=99.45 E-value=1.9e-13 Score=105.20 Aligned_cols=69 Identities=22% Similarity=0.315 Sum_probs=57.3
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCC--------cHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYY--------SVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~--------~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
||+.++||+||++.+++++++.+...+.+.+|++||++|+|+. +.++++.+.++. .++++++||||..
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~~~~~~~~~~~~~~~~~~~l~~~~----~~v~~V~GNhD~~ 76 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYHGPRNPLPEGYAPKKVAELLNAYA----DKIIAVRGNCDSE 76 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEcccccccCcCCCCccccCHHHHHHHHHhcC----CceEEEccCCcch
Confidence 6899999999999999999998876778999999999999873 456676665432 3699999999975
Q ss_pred h
Q 029935 119 Q 119 (185)
Q Consensus 119 ~ 119 (185)
.
T Consensus 77 ~ 77 (182)
T PRK09453 77 V 77 (182)
T ss_pred h
Confidence 3
No 33
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.44 E-value=8.7e-13 Score=96.81 Aligned_cols=75 Identities=24% Similarity=0.297 Sum_probs=58.4
Q ss_pred CCEEEEeCCCCCHHHH----HHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHH--HHHHHhCCCcEEEEcCCCchhhh
Q 029935 47 CPVTVCGDIHGQFHDL----VELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLL--VALKVRYRDRITILRGNHESRQI 120 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l----~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l--~~l~~~~p~~v~~l~GNHE~~~~ 120 (185)
+||++|||+|+..... ..+.......+.+.+|++||+++++..+....... .......+..+++++||||....
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD~~~~ 80 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNPSEEWRAQFWFFIRLLNPKIPVYFILGNHDYYSG 80 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSHHHHHHHHHHHHHHHHHTTTTEEEEE-TTSSHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccccccchhhhccchhhhhcccccccccccccccee
Confidence 4899999999999987 44445555667889999999999999988877654 33444555679999999999865
Q ss_pred h
Q 029935 121 T 121 (185)
Q Consensus 121 ~ 121 (185)
.
T Consensus 81 ~ 81 (200)
T PF00149_consen 81 N 81 (200)
T ss_dssp H
T ss_pred c
Confidence 4
No 34
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.39 E-value=1e-12 Score=98.83 Aligned_cols=63 Identities=17% Similarity=0.209 Sum_probs=51.4
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
||++++||+||+..+++.+++.+... +.|.++++||++ +.++++.+.++. .++++++||||..
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~----~~~~~V~GN~D~~ 64 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLA----AKVIAVRGNNDGE 64 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhC----CceEEEccCCCch
Confidence 68999999999999888877776665 679999999998 457777765543 3599999999973
No 35
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=99.38 E-value=2.8e-12 Score=95.83 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=64.9
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCH
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFY 127 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~ 127 (185)
|++++||+||+...+.++++.++. .|.+|++||++++++.+. +.. ...+++|+||||....
T Consensus 1 ~i~~isD~H~~~~~~~~~~~~~~~--~d~ii~~GD~~~~~~~~~--------~~~--~~~~~~V~GNhD~~~~------- 61 (155)
T cd00841 1 KIGVISDTHGSLELLEKALELFGD--VDLIIHAGDVLYPGPLNE--------LEL--KAPVIAVRGNCDGEVD------- 61 (155)
T ss_pred CEEEEecCCCCHHHHHHHHHHhcC--CCEEEECCccccccccch--------hhc--CCcEEEEeCCCCCcCC-------
Confidence 589999999999999999998765 789999999999998765 111 2459999999997421
Q ss_pred HHHHHHhCCHHHHHHHHHHhhcCCceEEE--c-CcEEEEecCCCCCC
Q 029935 128 DECLRKYGNANVWKHFTDLFDYLPLTALI--E-SQVFCLHGGLSPSL 171 (185)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~lP~~~~i--~-~~~l~vHaGi~p~~ 171 (185)
+..+|....+ + .+++++||...+..
T Consensus 62 -------------------~~~~p~~~~~~~~g~~i~v~Hg~~~~~~ 89 (155)
T cd00841 62 -------------------FPILPEEAVLEIGGKRIFLTHGHLYGVK 89 (155)
T ss_pred -------------------cccCCceEEEEECCEEEEEECCcccccc
Confidence 3455644333 3 37999999875544
No 36
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.29 E-value=4.9e-12 Score=93.91 Aligned_cols=62 Identities=24% Similarity=0.460 Sum_probs=47.6
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhh
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQI 120 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~ 120 (185)
||++++||+|++.+++.++++.+ ...+.+|++||+++. .++++.+.+. ++++++||||....
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~----~~~~~~~~~~------~~~~v~GNHD~~~~ 62 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP----EEVLELLRDI------PVYVVRGNHDNWAF 62 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH----HHHHHHHHHH------EEEEE--CCHSTHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH----HHHHHHHhcC------CEEEEeCCcccccc
Confidence 68999999999999999999988 357899999999983 7777777554 49999999997653
No 37
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.25 E-value=3.4e-11 Score=96.31 Aligned_cols=114 Identities=18% Similarity=0.189 Sum_probs=74.2
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhh---h
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQV---Y 124 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~---~ 124 (185)
||+++|||||++.... .+.+.....|.++++||+++ .+.++++.+.++ +..+++++||||.+..... +
T Consensus 2 rIa~isDiHg~~~~~~--~~~l~~~~pD~Vl~~GDi~~---~~~~~~~~l~~l----~~p~~~V~GNHD~~~~~~~~~k~ 72 (238)
T cd07397 2 RIAIVGDVHGQWDLED--IKALHLLQPDLVLFVGDFGN---ESVQLVRAISSL----PLPKAVILGNHDAWYDATFRKKG 72 (238)
T ss_pred EEEEEecCCCCchHHH--HHHHhccCCCEEEECCCCCc---ChHHHHHHHHhC----CCCeEEEcCCCcccccccccchH
Confidence 7899999999987632 22333345689999999986 456666666554 2459999999998653200 0
Q ss_pred CCH-----------------------------------------H-HHHHHhCCHHHHHHHHHHhhcCCceEEEcCcEEE
Q 029935 125 GFY-----------------------------------------D-ECLRKYGNANVWKHFTDLFDYLPLTALIESQVFC 162 (185)
Q Consensus 125 ~~~-----------------------------------------~-~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~~~l~ 162 (185)
... . +....|+....++.+...++.++.......++++
T Consensus 73 ~~l~~~L~~lg~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr~~fgi~s~~eA~~~ive~~~~~~~~~~~Vli 152 (238)
T cd07397 73 DRVQEQLELLGDLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVKAVYGVISLEESAQRIIAAAKKAPPDLPLILL 152 (238)
T ss_pred HHHHHHHHHhCCcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHHHHhCCCCHHHHHHHHHHHhhhcCCCCCeEEE
Confidence 000 1 3444455555667777778887633332347999
Q ss_pred EecCCCCC
Q 029935 163 LHGGLSPS 170 (185)
Q Consensus 163 vHaGi~p~ 170 (185)
.|+++.-.
T Consensus 153 aH~~~~G~ 160 (238)
T cd07397 153 AHNGPSGL 160 (238)
T ss_pred eCcCCcCC
Confidence 99998644
No 38
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.25 E-value=2.3e-11 Score=96.75 Aligned_cols=72 Identities=11% Similarity=0.155 Sum_probs=60.6
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.+|++++||+||++.+++++++.+...+.|.+|++||++++|+...++..++..+... +..+++++||||..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~g~~~~~~~~~l~~l~~l-~~pv~~V~GNhD~~ 75 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPKAAKSEDYAAFFRILGEA-HLPTFYVPGPQDAP 75 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCCCCCHHHHHHHHHHHHhc-CCceEEEcCCCChH
Confidence 3589999999999999999999876667899999999999998777777777766432 23599999999985
No 39
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.03 E-value=9.6e-10 Score=80.49 Aligned_cols=61 Identities=18% Similarity=0.268 Sum_probs=42.8
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcH--HHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSV--ETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~--e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
|++++||+||+.. .....+.|.+|++||+++++.... +.++++.++. . ..+++++||||..
T Consensus 1 ~i~~isD~H~~~~-------~~~~~~~D~vi~~GD~~~~~~~~~~~~~~~~l~~~~--~-~~~~~v~GNHD~~ 63 (135)
T cd07379 1 RFVCISDTHSRHR-------TISIPDGDVLIHAGDLTERGTLEELQKFLDWLKSLP--H-PHKIVIAGNHDLT 63 (135)
T ss_pred CEEEEeCCCCCCC-------cCcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhCC--C-CeEEEEECCCCCc
Confidence 5899999999987 223356789999999999876432 3444444332 1 2357899999964
No 40
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=98.99 E-value=8.6e-10 Score=84.24 Aligned_cols=66 Identities=21% Similarity=0.295 Sum_probs=48.5
Q ss_pred EEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCc-HHHHHHHHHHHHhCCCcEEEEcCCCchhhh
Q 029935 49 VTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYS-VETVTLLVALKVRYRDRITILRGNHESRQI 120 (185)
Q Consensus 49 i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~-~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~ 120 (185)
|+++||+||++..+.+ ..+...+.|.+|++||++++|... .+.++.+. ..+..++++.||||....
T Consensus 1 i~~~sD~H~~~~~~~~--~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~l~----~~~~p~~~v~GNHD~~~~ 67 (188)
T cd07392 1 ILAISDIHGDVEKLEA--IILKAEEADAVIVAGDITNFGGKEAAVEINLLL----AIGVPVLAVPGNCDTPEI 67 (188)
T ss_pred CEEEEecCCCHHHHHH--HHhhccCCCEEEECCCccCcCCHHHHHHHHHHH----hcCCCEEEEcCCCCCHHH
Confidence 5799999999998877 334455679999999999998763 22333332 233569999999998654
No 41
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.99 E-value=3e-09 Score=81.77 Aligned_cols=62 Identities=24% Similarity=0.337 Sum_probs=43.1
Q ss_pred CEEEEeCCC-CCHH-HHH-HHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 48 PVTVCGDIH-GQFH-DLV-ELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 48 ~i~vigDIH-G~~~-~l~-~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+|.||||.| |... .+. .+++.+...+.|.++++||+++ .++++++.++. .++++|+||||..
T Consensus 1 ~i~viSDtHl~~~~~~~~~~~~~~~~~~~~d~iih~GDi~~-----~~~~~~l~~~~----~~~~~V~GN~D~~ 65 (178)
T cd07394 1 LVLVIGDLHIPHRASDLPAKFKKLLVPGKIQHVLCTGNLCS-----KETYDYLKTIA----PDVHIVRGDFDEN 65 (178)
T ss_pred CEEEEEecCCCCCchhhHHHHHHHhccCCCCEEEECCCCCC-----HHHHHHHHhhC----CceEEEECCCCcc
Confidence 589999999 5533 111 2333333355789999999986 67777776543 2599999999963
No 42
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=98.93 E-value=3e-09 Score=86.90 Aligned_cols=71 Identities=18% Similarity=0.149 Sum_probs=54.7
Q ss_pred CCCEEEEeCCCCC----HHHHHHHHHhcCCCCCCeEEEeccccCCC--CCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 46 KCPVTVCGDIHGQ----FHDLVELFRIGGNAPDTNYLFMGDYVDRG--YYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 46 ~~~i~vigDIHG~----~~~l~~ll~~~~~~~~~~lv~lGD~vdrG--~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.+|++++||+|.. ...+.++++.+...+.|.++++||++|++ ....++.+.+..++... .++++.||||..
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~--pv~~V~GNHD~~ 125 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECA--PTFACFGNHDRP 125 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcC--CEEEecCCCCcc
Confidence 4799999999976 55677788777767789999999999953 23345666677776544 499999999974
No 43
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=98.91 E-value=8.4e-09 Score=73.08 Aligned_cols=67 Identities=25% Similarity=0.395 Sum_probs=50.4
Q ss_pred EEEeCCCCCHHHHHHHH--HhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 50 TVCGDIHGQFHDLVELF--RIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll--~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
+++||+|+......... ........+.+|++||+++.+....+...............++++.||||
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GNHD 69 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDGPDPEEVLAAALALLLLLGIPVYVVPGNHD 69 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCCCCchHHHHHHHHHhhcCCCCEEEeCCCce
Confidence 47999999999887765 44445667899999999999888776555422223344457999999999
No 44
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=98.90 E-value=2.6e-09 Score=84.13 Aligned_cols=72 Identities=21% Similarity=0.161 Sum_probs=55.1
Q ss_pred CCCEEEEeCCCCCHH----HHHHHHHhcCCCCCCeEEEeccccCCCCCcH-HHHHHHHHHHHhCCCcEEEEcCCCchhh
Q 029935 46 KCPVTVCGDIHGQFH----DLVELFRIGGNAPDTNYLFMGDYVDRGYYSV-ETVTLLVALKVRYRDRITILRGNHESRQ 119 (185)
Q Consensus 46 ~~~i~vigDIHG~~~----~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~-e~l~~l~~l~~~~p~~v~~l~GNHE~~~ 119 (185)
.++++++||+|+... .+.++++.+.....|.++++||+++.+.... ...+++..+.. +..++++.||||...
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~--~~~v~~v~GNHD~~~ 77 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKA--PLGVYAVLGNHDYYS 77 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCC--CCCEEEECCCccccc
Confidence 368999999998744 6778887776667789999999999987764 55555555432 345999999999854
No 45
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=98.81 E-value=1.3e-08 Score=81.75 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCCH------HHHHHHHHhcCCCCCCeEEEeccccCC--C-----CCcHHHHHHHHHHHHhCCCcEEEEcC
Q 029935 47 CPVTVCGDIHGQF------HDLVELFRIGGNAPDTNYLFMGDYVDR--G-----YYSVETVTLLVALKVRYRDRITILRG 113 (185)
Q Consensus 47 ~~i~vigDIHG~~------~~l~~ll~~~~~~~~~~lv~lGD~vdr--G-----~~~~e~l~~l~~l~~~~p~~v~~l~G 113 (185)
|++++|||+|... .++.+.++.. ....+.++++||++|. | +...++++.+.++... +..++++.|
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~-~~~~d~l~i~GDl~d~~~g~~~~~~~~~~~~~~l~~l~~~-g~~v~~v~G 78 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGE-ARQADALYILGDLFEAWIGDDDPSPFAREIAAALKALSDS-GVPCYFMHG 78 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhh-hccCCEEEEccceeccccccCcCCHHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 6899999999542 2344444332 2357899999999985 2 2345677777777533 246999999
Q ss_pred CCchhh
Q 029935 114 NHESRQ 119 (185)
Q Consensus 114 NHE~~~ 119 (185)
|||...
T Consensus 79 NHD~~~ 84 (241)
T PRK05340 79 NRDFLL 84 (241)
T ss_pred CCchhh
Confidence 999743
No 46
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=98.81 E-value=4.4e-09 Score=79.45 Aligned_cols=67 Identities=19% Similarity=0.171 Sum_probs=48.1
Q ss_pred EEEEeCCCCCHHHHHHHH-HhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 49 VTVCGDIHGQFHDLVELF-RIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 49 i~vigDIHG~~~~l~~ll-~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+.++||+|++.......+ +.....+.|.++++||+++++....... ++.. ...+..+++++||||..
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~~~~~~~~-~~~~--~~~~~~v~~v~GNHD~~ 68 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLTDAPRFAP-LLLA--LKGFEPVIYVPGNHEFY 68 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCcchHHHHH-HHHh--hcCCccEEEeCCCcceE
Confidence 468999999988776655 3344556789999999999887655443 2222 22335699999999986
No 47
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=98.76 E-value=2.2e-08 Score=80.23 Aligned_cols=68 Identities=19% Similarity=0.167 Sum_probs=50.3
Q ss_pred CEEEEeCCCCCH------HHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 48 PVTVCGDIHGQF------HDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 48 ~i~vigDIHG~~------~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
|++++||+|++. ..+.++++.+.....|.+|++||+++..+.+.+.++.+.++ .+..++++.||||..
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~l~~~---~~~pv~~v~GNHD~~ 74 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISNDFQRSLPFIEKLQEL---KGIKVTFNAGNHDML 74 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccchhhHHHHHHHHHHh---cCCcEEEECCCCCCC
Confidence 589999999653 23567777666566899999999999876555555554442 334699999999964
No 48
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=5.8e-08 Score=78.61 Aligned_cols=72 Identities=21% Similarity=0.210 Sum_probs=51.4
Q ss_pred CCEEEEeCCCC-C-----------HHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHH----HHHHHHHHhCCCcEEE
Q 029935 47 CPVTVCGDIHG-Q-----------FHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETV----TLLVALKVRYRDRITI 110 (185)
Q Consensus 47 ~~i~vigDIHG-~-----------~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l----~~l~~l~~~~p~~v~~ 110 (185)
||++.+||+|- . ...|..+++.+.....|.+++.||++|+...+.+.. +++..++...+-.+++
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~ 80 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVV 80 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEE
Confidence 68999999993 2 234566666665667899999999999876555443 3444554333346999
Q ss_pred EcCCCchh
Q 029935 111 LRGNHESR 118 (185)
Q Consensus 111 l~GNHE~~ 118 (185)
+.||||..
T Consensus 81 i~GNHD~~ 88 (253)
T TIGR00619 81 ISGNHDSA 88 (253)
T ss_pred EccCCCCh
Confidence 99999985
No 49
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.65 E-value=1e-07 Score=77.57 Aligned_cols=72 Identities=18% Similarity=0.241 Sum_probs=52.0
Q ss_pred CEEEEeCCC-C------------CHHHHHHHHHhcCCCCCCeEEEeccccCCCCC-cHHHHHHHHHHHHhCCCcEEEEcC
Q 029935 48 PVTVCGDIH-G------------QFHDLVELFRIGGNAPDTNYLFMGDYVDRGYY-SVETVTLLVALKVRYRDRITILRG 113 (185)
Q Consensus 48 ~i~vigDIH-G------------~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~-~~e~l~~l~~l~~~~p~~v~~l~G 113 (185)
|+++|||+| + ....+.++++.+.....+.+|++||+++.|.. +.+-++.+.+.-...+..+++++|
T Consensus 2 r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~~~~~~~~~~~~~~~~l~~l~~p~~~v~G 81 (267)
T cd07396 2 RFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDGDNARAEEALDAVLAILDRLKGPVHHVLG 81 (267)
T ss_pred eEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecCCCchHHHHHHHHHHHHHhcCCCEEEecC
Confidence 689999999 2 24567777887766668899999999988863 334444444433333456999999
Q ss_pred CCchhh
Q 029935 114 NHESRQ 119 (185)
Q Consensus 114 NHE~~~ 119 (185)
|||...
T Consensus 82 NHD~~~ 87 (267)
T cd07396 82 NHDLYN 87 (267)
T ss_pred cccccc
Confidence 999863
No 50
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=98.63 E-value=1.5e-07 Score=71.82 Aligned_cols=59 Identities=15% Similarity=0.117 Sum_probs=36.4
Q ss_pred HHHHHHHhcCCCCCCeEEEeccccCCCCCc-HHHHHHH-HHHHHhCCCcEEEEcCCCchhh
Q 029935 61 DLVELFRIGGNAPDTNYLFMGDYVDRGYYS-VETVTLL-VALKVRYRDRITILRGNHESRQ 119 (185)
Q Consensus 61 ~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~-~e~l~~l-~~l~~~~p~~v~~l~GNHE~~~ 119 (185)
.+.++.+.+...+.+.+|++||+++....+ .+....+ .......+..+++++||||...
T Consensus 29 ~~~~l~~~~~~~~~d~lii~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~GNHD~~~ 89 (172)
T cd07391 29 TLERLDRLIEEYGPERLIILGDLKHSFGGLSRQEFEEVAFLRLLAKDVDVILIRGNHDGGL 89 (172)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccccccCHHHHHHHHHHHhccCCCeEEEEcccCccch
Confidence 345555656556779999999999865433 2222221 1111123347999999999853
No 51
>PHA02546 47 endonuclease subunit; Provisional
Probab=98.60 E-value=1.3e-07 Score=79.63 Aligned_cols=72 Identities=21% Similarity=0.286 Sum_probs=51.2
Q ss_pred CCEEEEeCCC-C-----------CHHHHHHHHHhcCCCCCCeEEEeccccCCC-CCcHHHHHHHHH----HHHhCCCcEE
Q 029935 47 CPVTVCGDIH-G-----------QFHDLVELFRIGGNAPDTNYLFMGDYVDRG-YYSVETVTLLVA----LKVRYRDRIT 109 (185)
Q Consensus 47 ~~i~vigDIH-G-----------~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG-~~~~e~l~~l~~----l~~~~p~~v~ 109 (185)
||++.+||+| | ....|.++++.+...+.|.++++||++|+. +.+.+++.++.+ .-...+-.++
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~~~~~~~~~~~~~~~l~~~L~~~gi~v~ 80 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVRKAITQNTMNFVREKIFDLLKEAGITLH 80 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCHHHHHHHHHHHHHHHHHCCCeEE
Confidence 6899999999 4 124456666666667789999999999985 455555555543 1122345699
Q ss_pred EEcCCCchh
Q 029935 110 ILRGNHESR 118 (185)
Q Consensus 110 ~l~GNHE~~ 118 (185)
+|.||||..
T Consensus 81 ~I~GNHD~~ 89 (340)
T PHA02546 81 VLVGNHDMY 89 (340)
T ss_pred EEccCCCcc
Confidence 999999974
No 52
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.58 E-value=1.7e-07 Score=82.89 Aligned_cols=116 Identities=20% Similarity=0.271 Sum_probs=63.8
Q ss_pred cCCCEEEEeCCC-CCH----HHHHHHHHhcC---------CCCCCeEEEeccccCC-CCCc---------------HHHH
Q 029935 45 VKCPVTVCGDIH-GQF----HDLVELFRIGG---------NAPDTNYLFMGDYVDR-GYYS---------------VETV 94 (185)
Q Consensus 45 ~~~~i~vigDIH-G~~----~~l~~ll~~~~---------~~~~~~lv~lGD~vdr-G~~~---------------~e~l 94 (185)
.+.++++|||+| |.. ..+..+++.+. ....+.+|++||++|. |+.+ .++.
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p~~~~~~~~~~~~~~~~~l~ 321 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYPGQEEELEIVDIYEQYEAAA 321 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCccchhhccchhhHHHHHHHH
Confidence 346799999999 542 23445544433 2345799999999994 3221 1344
Q ss_pred HHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceEEEcC-cEEEEecCC
Q 029935 95 TLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTALIES-QVFCLHGGL 167 (185)
Q Consensus 95 ~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~~i~~-~~l~vHaGi 167 (185)
+++.++... -.+++++||||............+.+...-. +.-..++.. |....+++ +++++||-.
T Consensus 322 ~~L~~L~~~--i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~----~~~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 322 EYLKQIPED--IKIIISPGNHDAVRQAEPQPAFPEEIRSLFP----EHNVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred HHHHhhhcC--CeEEEecCCCcchhhccCCCCccHHHHHhcC----cCCeEEecC-CeEEEECCEEEEEECCCC
Confidence 555555432 3599999999976432211111111111000 001223333 65554444 799999975
No 53
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=98.54 E-value=4.1e-07 Score=72.32 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=47.8
Q ss_pred CEEEEeCCCCC------------HHHHHHHHHhcCCC--CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcC
Q 029935 48 PVTVCGDIHGQ------------FHDLVELFRIGGNA--PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRG 113 (185)
Q Consensus 48 ~i~vigDIHG~------------~~~l~~ll~~~~~~--~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~G 113 (185)
|++++||+|=. ...++++++.+... +.+.+|++||+++.|.. +..+.+.+...+.+..+++++|
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~~~~--~~~~~~~~~l~~~~~p~~~v~G 78 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDDGSP--ESYERLRELLAALPIPVYLLPG 78 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCCCCH--HHHHHHHHHHhhcCCCEEEeCC
Confidence 68999999944 34577788776654 67899999999998653 2222222222222456999999
Q ss_pred CCchh
Q 029935 114 NHESR 118 (185)
Q Consensus 114 NHE~~ 118 (185)
|||..
T Consensus 79 NHD~~ 83 (240)
T cd07402 79 NHDDR 83 (240)
T ss_pred CCCCH
Confidence 99975
No 54
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=98.49 E-value=4.6e-07 Score=74.02 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=50.2
Q ss_pred cCCCEEEEeCCC-C-----------CHHHHHHHHHhcCC--CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEE
Q 029935 45 VKCPVTVCGDIH-G-----------QFHDLVELFRIGGN--APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITI 110 (185)
Q Consensus 45 ~~~~i~vigDIH-G-----------~~~~l~~ll~~~~~--~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~ 110 (185)
..++++.|||+| . ....|.++++.+.. .+.|.+|+.||+++.|. .+-+..+.+.-.+.+..+++
T Consensus 13 ~~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~~~--~~~~~~~~~~l~~l~~Pv~~ 90 (275)
T PRK11148 13 ARVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQDHS--SEAYQHFAEGIAPLRKPCVW 90 (275)
T ss_pred CCEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCCCC--HHHHHHHHHHHhhcCCcEEE
Confidence 457899999999 1 13567788876643 34689999999999874 33333333333344456999
Q ss_pred EcCCCchh
Q 029935 111 LRGNHESR 118 (185)
Q Consensus 111 l~GNHE~~ 118 (185)
+.||||..
T Consensus 91 v~GNHD~~ 98 (275)
T PRK11148 91 LPGNHDFQ 98 (275)
T ss_pred eCCCCCCh
Confidence 99999973
No 55
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.49 E-value=3.5e-07 Score=72.99 Aligned_cols=68 Identities=10% Similarity=0.115 Sum_probs=43.9
Q ss_pred EEEEeCCCCCH------HHHHHHHHhcCCCCCCeEEEeccccCCC-----CC--cHHHHHHHHHHHHhCCCcEEEEcCCC
Q 029935 49 VTVCGDIHGQF------HDLVELFRIGGNAPDTNYLFMGDYVDRG-----YY--SVETVTLLVALKVRYRDRITILRGNH 115 (185)
Q Consensus 49 i~vigDIHG~~------~~l~~ll~~~~~~~~~~lv~lGD~vdrG-----~~--~~e~l~~l~~l~~~~p~~v~~l~GNH 115 (185)
+++|||+|... ..+.+.+..... ..|.++++||++|.. +. ..++.+.+..+... +..++++.|||
T Consensus 1 ~~~iSDlHl~~~~~~~~~~~l~~l~~~~~-~~d~lii~GDi~d~~~~~~~~~~~~~~~~~~l~~L~~~-~~~v~~v~GNH 78 (231)
T TIGR01854 1 TLFISDLHLSPERPDITALFLDFLREEAR-KADALYILGDLFEAWIGDDDPSTLARSVAQAIRQVSDQ-GVPCYFMHGNR 78 (231)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHHhhhc-cCCEEEEcCceeccccCCCCCCHHHHHHHHHHHHHHHC-CCeEEEEcCCC
Confidence 37899999643 123333333222 578999999999952 11 13455666666532 34699999999
Q ss_pred chh
Q 029935 116 ESR 118 (185)
Q Consensus 116 E~~ 118 (185)
|..
T Consensus 79 D~~ 81 (231)
T TIGR01854 79 DFL 81 (231)
T ss_pred chh
Confidence 975
No 56
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=98.48 E-value=4.6e-07 Score=70.99 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=50.8
Q ss_pred CEEEEeCCC-CCH--------------HHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHh---CCCcEE
Q 029935 48 PVTVCGDIH-GQF--------------HDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVR---YRDRIT 109 (185)
Q Consensus 48 ~i~vigDIH-G~~--------------~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~---~p~~v~ 109 (185)
|++.+||+| |.. ..|.++++.+.....+.+|++||+++....+.+.+..+.+.-.+ .+..++
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 80 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNNPSPEALELLIEALRRLKEAGIPVF 80 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCCCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 689999999 321 23667777666667789999999999876555544443332222 134699
Q ss_pred EEcCCCchhhh
Q 029935 110 ILRGNHESRQI 120 (185)
Q Consensus 110 ~l~GNHE~~~~ 120 (185)
++.||||....
T Consensus 81 ~~~GNHD~~~~ 91 (223)
T cd00840 81 IIAGNHDSPSR 91 (223)
T ss_pred EecCCCCCccc
Confidence 99999998754
No 57
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.46 E-value=3.9e-07 Score=66.39 Aligned_cols=58 Identities=21% Similarity=0.119 Sum_probs=42.4
Q ss_pred EEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 50 TVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.||||.||..+.+.++... ..+.|.++++||+. .++++.+.++. +..+++++||||..
T Consensus 1 ~viSDtH~~~~~~~~~~~~--~~~~d~ii~~GD~~------~~~~~~~~~~~---~~~~~~V~GN~D~~ 58 (129)
T cd07403 1 LVISDTESPALYSPEIKVR--LEGVDLILSAGDLP------KEYLEYLVTML---NVPVYYVHGNHDVD 58 (129)
T ss_pred CeeccccCccccchHHHhh--CCCCCEEEECCCCC------hHHHHHHHHHc---CCCEEEEeCCCccC
Confidence 4899999998877776664 45678999999973 34555555541 23489999999943
No 58
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=98.44 E-value=4.6e-07 Score=68.83 Aligned_cols=67 Identities=27% Similarity=0.412 Sum_probs=44.9
Q ss_pred EEEEeCCCCCHHHH---------------HHHHHhcCC--CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEE
Q 029935 49 VTVCGDIHGQFHDL---------------VELFRIGGN--APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITIL 111 (185)
Q Consensus 49 i~vigDIHG~~~~l---------------~~ll~~~~~--~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l 111 (185)
+++|||+|=..... .++++.+.. .+.+.+|++||++++|+.+.. ++++.++ +..++++
T Consensus 1 ~~~isD~Hlg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~d~vi~~GDl~~~~~~~~~-~~~l~~~----~~~~~~v 75 (168)
T cd07390 1 IYFTSDTHFGHANILRFCNRPFDDVEEMDEALIRNWNETVGPDDTVYHLGDFSFGGKAGTE-LELLSRL----NGRKHLI 75 (168)
T ss_pred CeEecccccCCHHHHccCCCCCCCHHHHHHHHHHHHhhhcCCCCEEEEeCCCCCCCChHHH-HHHHHhC----CCCeEEE
Confidence 47899999554432 223433322 346899999999999886644 4444433 3469999
Q ss_pred cCCCchhhh
Q 029935 112 RGNHESRQI 120 (185)
Q Consensus 112 ~GNHE~~~~ 120 (185)
+||||....
T Consensus 76 ~GNHD~~~~ 84 (168)
T cd07390 76 KGNHDSSLE 84 (168)
T ss_pred eCCCCchhh
Confidence 999997643
No 59
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=98.43 E-value=6.6e-07 Score=65.76 Aligned_cols=68 Identities=22% Similarity=0.250 Sum_probs=44.1
Q ss_pred EEEEeCCCCCHH------H----HHHHHHhcCCCCCCeEEEeccccCCCCCc--HHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 49 VTVCGDIHGQFH------D----LVELFRIGGNAPDTNYLFMGDYVDRGYYS--VETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 49 i~vigDIHG~~~------~----l~~ll~~~~~~~~~~lv~lGD~vdrG~~~--~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
|+.|||+|=... . |.++++.+...+.+.++++||+++.|... ....+++..+.... ..+++++||||
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~GNHD 79 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQRGLPEEFEEAREFLDALPAPL-EPVLVVPGNHD 79 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCCCCHHHHHHHHHHHHHccccC-CcEEEeCCCCe
Confidence 478999993211 1 22345556566789999999999987642 12334444444221 26999999999
Q ss_pred h
Q 029935 117 S 117 (185)
Q Consensus 117 ~ 117 (185)
.
T Consensus 80 ~ 80 (144)
T cd07400 80 V 80 (144)
T ss_pred E
Confidence 7
No 60
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.42 E-value=1e-06 Score=67.37 Aligned_cols=65 Identities=15% Similarity=0.194 Sum_probs=47.4
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.|++.|+||.||...+..+..+.......|.+|.+||++...+.. .+..- ...+++.|+||.|..
T Consensus 1 ~m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~~~~~~--~l~~~------~~~~i~~V~GN~D~~ 65 (172)
T COG0622 1 MMKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTSPFTLD--ALEGG------LAAKLIAVRGNCDGE 65 (172)
T ss_pred CcEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCCccchH--Hhhcc------cccceEEEEccCCCc
Confidence 378999999999997666666666667789999999998653322 22110 125699999999974
No 61
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.42 E-value=1e-06 Score=75.91 Aligned_cols=74 Identities=16% Similarity=0.173 Sum_probs=58.6
Q ss_pred CCCEEEEeCCCCC------------HHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHh----------
Q 029935 46 KCPVTVCGDIHGQ------------FHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVR---------- 103 (185)
Q Consensus 46 ~~~i~vigDIHG~------------~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~---------- 103 (185)
.+||+.+||+|-. +.+|.++++.+.....|.+++.||++|++.-|.+++..+.+.-.+
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~~~Ps~~~~~~~~~~lr~~~~g~~p~~~ 82 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHENKPSRKSLYQVLRSLRLYCLGDKPCEL 82 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCCCCCCHHHHHHHHHHHHHhhccCCccch
Confidence 5799999999943 457788888887778899999999999998888887665543322
Q ss_pred --------------------------CCCcEEEEcCCCchhh
Q 029935 104 --------------------------YRDRITILRGNHESRQ 119 (185)
Q Consensus 104 --------------------------~p~~v~~l~GNHE~~~ 119 (185)
..-.+++|-||||...
T Consensus 83 ~~Lsd~~~~~~~~~~~~~ny~d~~~~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 83 EFLSDASVVFNQSAFGNVNYEDPNINVAIPVFSIHGNHDDPS 124 (405)
T ss_pred hhccchhhhcccccccccccccccccCCCCEEEEcCCCCCcc
Confidence 1336999999999974
No 62
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.41 E-value=9.9e-07 Score=71.83 Aligned_cols=70 Identities=16% Similarity=0.214 Sum_probs=46.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhc---CCCCCCeEEEeccccCCCCCc-HHHH----------HHHHHH--HHhCCCcEEEEc
Q 029935 49 VTVCGDIHGQFHDLVELFRIG---GNAPDTNYLFMGDYVDRGYYS-VETV----------TLLVAL--KVRYRDRITILR 112 (185)
Q Consensus 49 i~vigDIHG~~~~l~~ll~~~---~~~~~~~lv~lGD~vdrG~~~-~e~l----------~~l~~l--~~~~p~~v~~l~ 112 (185)
|+|+||+||+++.+-+.++.. ...+.|.+|++||+...+..+ .+.+ ++..-+ ....|-.+++|.
T Consensus 1 i~v~Gd~HG~~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~~~~~d~~~~~~p~k~~~~~~f~~~~~g~~~~p~~t~fi~ 80 (262)
T cd00844 1 IAVEGCCHGELDKIYETLEKIEKKEGTKVDLLICCGDFQAVRNEADLKCMAVPPKYRKMGDFYKYYSGEKKAPILTIFIG 80 (262)
T ss_pred CEEEecCCccHHHHHHHHHHHHHhcCCCCcEEEEcCCCCCcCCcchhhhhccchhhhhhhhHHHHhcCCccCCeeEEEEC
Confidence 589999999999887654432 235678999999997654433 2221 121111 123555689999
Q ss_pred CCCchh
Q 029935 113 GNHESR 118 (185)
Q Consensus 113 GNHE~~ 118 (185)
||||..
T Consensus 81 GNHE~~ 86 (262)
T cd00844 81 GNHEAS 86 (262)
T ss_pred CCCCCH
Confidence 999974
No 63
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=98.36 E-value=1.8e-06 Score=68.80 Aligned_cols=69 Identities=16% Similarity=0.147 Sum_probs=45.6
Q ss_pred CCEEEEeCCC-CCHHH----------------HHHHHHhcCCCCCCeEEEeccccCCCCC---cHHHHHHHHHHHHhCCC
Q 029935 47 CPVTVCGDIH-GQFHD----------------LVELFRIGGNAPDTNYLFMGDYVDRGYY---SVETVTLLVALKVRYRD 106 (185)
Q Consensus 47 ~~i~vigDIH-G~~~~----------------l~~ll~~~~~~~~~~lv~lGD~vdrG~~---~~e~l~~l~~l~~~~p~ 106 (185)
.++.+|||+| |--.. ++++.+.+...+.+.+|++||+.+.... ..++.+++.++. .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~----~ 90 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFKKGLEWRFIREFIEVTF----R 90 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccCChHHHHHHHHHHHhcC----C
Confidence 6799999999 43222 3334444455567899999999976544 223334444332 4
Q ss_pred cEEEEcCCCchhh
Q 029935 107 RITILRGNHESRQ 119 (185)
Q Consensus 107 ~v~~l~GNHE~~~ 119 (185)
++++++||||...
T Consensus 91 ~v~~V~GNHD~~~ 103 (225)
T TIGR00024 91 DLILIRGNHDALI 103 (225)
T ss_pred cEEEECCCCCCcc
Confidence 6999999999753
No 64
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=98.35 E-value=2.2e-06 Score=66.68 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=46.1
Q ss_pred CCEEEEeCCCCCHH------------HHHHHHHhcCCCCCCeEEEeccccCCCCCc---HHHHHHHHHHHHhCCCcEEEE
Q 029935 47 CPVTVCGDIHGQFH------------DLVELFRIGGNAPDTNYLFMGDYVDRGYYS---VETVTLLVALKVRYRDRITIL 111 (185)
Q Consensus 47 ~~i~vigDIHG~~~------------~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~---~e~l~~l~~l~~~~p~~v~~l 111 (185)
.++++|+|+|-... .+..+.+.+.....+.+|++||+++.+... .+.+..+.+......-.++++
T Consensus 3 ~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~ 82 (199)
T cd07383 3 FKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENTNDNSTSALDKAVSPMIDRKIPWAAT 82 (199)
T ss_pred eEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCCchHHHHHHHHHHHHHHHcCCCEEEE
Confidence 57999999995222 222333334445678999999999976653 455555444333333458999
Q ss_pred cCCCc
Q 029935 112 RGNHE 116 (185)
Q Consensus 112 ~GNHE 116 (185)
.||||
T Consensus 83 ~GNHD 87 (199)
T cd07383 83 FGNHD 87 (199)
T ss_pred CccCC
Confidence 99999
No 65
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=98.35 E-value=2.3e-06 Score=69.37 Aligned_cols=73 Identities=19% Similarity=0.239 Sum_probs=54.2
Q ss_pred CCEEEEeCCCCC------HHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHH--hCCCcEEEEcCCCchh
Q 029935 47 CPVTVCGDIHGQ------FHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKV--RYRDRITILRGNHESR 118 (185)
Q Consensus 47 ~~i~vigDIHG~------~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~--~~p~~v~~l~GNHE~~ 118 (185)
++++.|||+|-. .+.+.++++.+...+.|.+|+.||+.+.| ..+-.+.+.++-. ..+..+++++||||..
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~~--~~~~~~~~~~~l~~~~~~~~~~~vpGNHD~~ 78 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTNDG--EPEEYRRLKELLARLELPAPVIVVPGNHDAR 78 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCCC--CHHHHHHHHHHHhhccCCCceEeeCCCCcCC
Confidence 578999999966 34466777888877779999999999995 3334444444333 5566799999999987
Q ss_pred hhh
Q 029935 119 QIT 121 (185)
Q Consensus 119 ~~~ 121 (185)
...
T Consensus 79 ~~~ 81 (301)
T COG1409 79 VVN 81 (301)
T ss_pred chH
Confidence 553
No 66
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=98.33 E-value=1.5e-06 Score=74.97 Aligned_cols=71 Identities=21% Similarity=0.202 Sum_probs=48.8
Q ss_pred CCEEEEeCCCCCH--------HH----HHHHHHhcCCCCCCeEEEeccccCCCCCcHHHH----HHHHHHHHhCCCcEEE
Q 029935 47 CPVTVCGDIHGQF--------HD----LVELFRIGGNAPDTNYLFMGDYVDRGYYSVETV----TLLVALKVRYRDRITI 110 (185)
Q Consensus 47 ~~i~vigDIHG~~--------~~----l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l----~~l~~l~~~~p~~v~~ 110 (185)
||++.+||+|-.. .. +..+++.+.....|.+|++||++|++..+.... +++..++. .+-.+++
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~~~p~~~a~~~~~~~l~~L~~-~~~~v~~ 79 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDTGSPPSYARELYNRFVVNLQQ-TGCQLVV 79 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccCCCCcHHHHHHHHHHHHHHHh-cCCcEEE
Confidence 6899999999321 11 344555566677899999999999986554332 33344442 2346999
Q ss_pred EcCCCchh
Q 029935 111 LRGNHESR 118 (185)
Q Consensus 111 l~GNHE~~ 118 (185)
|.||||..
T Consensus 80 I~GNHD~~ 87 (407)
T PRK10966 80 LAGNHDSV 87 (407)
T ss_pred EcCCCCCh
Confidence 99999975
No 67
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.32 E-value=1.1e-06 Score=66.21 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=32.6
Q ss_pred cCCCCCCeEEEeccccCCCCCc-HHHH-HHHHHHHHh---C-CCcEEEEcCCCchhh
Q 029935 69 GGNAPDTNYLFMGDYVDRGYYS-VETV-TLLVALKVR---Y-RDRITILRGNHESRQ 119 (185)
Q Consensus 69 ~~~~~~~~lv~lGD~vdrG~~~-~e~l-~~l~~l~~~---~-p~~v~~l~GNHE~~~ 119 (185)
+...+.+.+|++||+++.+... .+.. +.+.++... . +.+++++.||||...
T Consensus 34 i~~~~pd~vv~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~GNHD~~~ 90 (156)
T cd08165 34 LWLLQPDVVFVLGDLFDEGKWSTDEEWEDYVERFKKMFGHPPDLPLHVVVGNHDIGF 90 (156)
T ss_pred HHhcCCCEEEECCCCCCCCccCCHHHHHHHHHHHHHHhccCCCCeEEEEcCCCCcCC
Confidence 3445678999999999987642 2222 223333322 1 246999999999854
No 68
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=98.29 E-value=1.4e-06 Score=69.53 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=41.4
Q ss_pred EEEEeCCCCC---------H-----HHHHHHHHhcCC--CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEc
Q 029935 49 VTVCGDIHGQ---------F-----HDLVELFRIGGN--APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILR 112 (185)
Q Consensus 49 i~vigDIHG~---------~-----~~l~~ll~~~~~--~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~ 112 (185)
|++++|+|-. + +-+.++.+.+.. .+.|.+|+.||++++++.. +....+..++. .+..+++|.
T Consensus 1 ~~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~~~~~-~~~~~l~~l~~-l~~~v~~V~ 78 (232)
T cd07393 1 IFAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWAMKLE-EAKLDLAWIDA-LPGTKVLLK 78 (232)
T ss_pred CeEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccCCChH-HHHHHHHHHHh-CCCCeEEEe
Confidence 5789999955 1 223333333222 2678999999999876533 33233333332 233589999
Q ss_pred CCCch
Q 029935 113 GNHES 117 (185)
Q Consensus 113 GNHE~ 117 (185)
||||.
T Consensus 79 GNHD~ 83 (232)
T cd07393 79 GNHDY 83 (232)
T ss_pred CCccc
Confidence 99996
No 69
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=98.28 E-value=2.6e-06 Score=67.22 Aligned_cols=70 Identities=20% Similarity=0.134 Sum_probs=45.3
Q ss_pred CEEEEeCCCC----CHHHH----HHHHHhcCCCCCCeEEEeccccCCCCCcHH---HHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 48 PVTVCGDIHG----QFHDL----VELFRIGGNAPDTNYLFMGDYVDRGYYSVE---TVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 48 ~i~vigDIHG----~~~~l----~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e---~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
+++++||+|- ....+ ..+++.+.....+.+|++||+++.+....+ ..+.+..+.. .+-.+++++||||
T Consensus 2 ~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~-~~~p~~~~~GNHD 80 (214)
T cd07399 2 TLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDK-AGIPYSVLAGNHD 80 (214)
T ss_pred EEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHH-cCCcEEEECCCCc
Confidence 6899999994 22223 334455545567899999999999884432 2233333331 2234899999999
Q ss_pred hh
Q 029935 117 SR 118 (185)
Q Consensus 117 ~~ 118 (185)
..
T Consensus 81 ~~ 82 (214)
T cd07399 81 LV 82 (214)
T ss_pred ch
Confidence 53
No 70
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.24 E-value=5.2e-06 Score=65.44 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=57.4
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEecccc--CCCCCcHHHHH-HHHHHHHhCCCcEEEEcCCCchhhh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYV--DRGYYSVETVT-LLVALKVRYRDRITILRGNHESRQI 120 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~v--drG~~~~e~l~-~l~~l~~~~p~~v~~l~GNHE~~~~ 120 (185)
+||+.+++|+||..+.+.+++..++....|.+|+.||+. +.|+.-...-+ ++..++ ...-.+++++||.|...+
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~-~~~~~v~avpGNcD~~~v 79 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALK-ELGIPVLAVPGNCDPPEV 79 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHH-hcCCeEEEEcCCCChHHH
Confidence 589999999999999999999988877889999999999 77775433322 133333 222469999999998755
No 71
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=98.15 E-value=6e-06 Score=68.02 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=52.9
Q ss_pred CCCEEEEeCCCCCHHH--HHHHHHhcCCCCCCeEEEeccccCC--CCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhh
Q 029935 46 KCPVTVCGDIHGQFHD--LVELFRIGGNAPDTNYLFMGDYVDR--GYYSVETVTLLVALKVRYRDRITILRGNHESRQI 120 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~--l~~ll~~~~~~~~~~lv~lGD~vdr--G~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~ 120 (185)
..+|+.+||+|-+... ..+.+..+.....|-+++.||++|+ -+....+...+..|+... .++++.||||...-
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~~~~~~~~~~~L~~L~~~~--gv~av~GNHd~~~~ 120 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDRPPGVAALALFLAKLKAPL--GVFAVLGNHDYGVD 120 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCCCCCHHHHHHHHHhhhccC--CEEEEecccccccc
Confidence 4579999999976555 2334444433344999999999995 556666777777777554 49999999998643
No 72
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.13 E-value=2.2e-05 Score=62.52 Aligned_cols=66 Identities=21% Similarity=0.331 Sum_probs=41.6
Q ss_pred EEEeCCCCC--HHH----HHHHHHhcCCCCCCeEEEeccccCC--CCC-c----HHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 50 TVCGDIHGQ--FHD----LVELFRIGGNAPDTNYLFMGDYVDR--GYY-S----VETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 50 ~vigDIHG~--~~~----l~~ll~~~~~~~~~~lv~lGD~vdr--G~~-~----~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
++|||+|=. -.+ |...++.... ..+.++++||++|. |.+ . .++...+..+. +.+.+++++.||||
T Consensus 1 lFISDlHL~~~~p~~t~~fl~Fl~~~a~-~ad~lyilGDifd~w~g~~~~~~~~~~V~~~l~~~a-~~G~~v~~i~GN~D 78 (237)
T COG2908 1 LFISDLHLGPKRPALTAFFLDFLREEAA-QADALYILGDIFDGWIGDDEPPQLHRQVAQKLLRLA-RKGTRVYYIHGNHD 78 (237)
T ss_pred CeeeccccCCCCcHHHHHHHHHHHhccc-cCcEEEEechhhhhhhcCCcccHHHHHHHHHHHHHH-hcCCeEEEecCchH
Confidence 479999933 222 3445554332 56899999999973 332 2 23444444433 45568999999999
Q ss_pred h
Q 029935 117 S 117 (185)
Q Consensus 117 ~ 117 (185)
.
T Consensus 79 f 79 (237)
T COG2908 79 F 79 (237)
T ss_pred H
Confidence 4
No 73
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.13 E-value=6.2e-06 Score=66.85 Aligned_cols=70 Identities=20% Similarity=0.073 Sum_probs=44.0
Q ss_pred EEEEeCCCCCHH------HH-HHHHHhcCCCCCCeEEEeccccCCCCCc-------HHHH-HHHHHHHH---hCCCcEEE
Q 029935 49 VTVCGDIHGQFH------DL-VELFRIGGNAPDTNYLFMGDYVDRGYYS-------VETV-TLLVALKV---RYRDRITI 110 (185)
Q Consensus 49 i~vigDIHG~~~------~l-~~ll~~~~~~~~~~lv~lGD~vdrG~~~-------~e~l-~~l~~l~~---~~p~~v~~ 110 (185)
++.++|+|-... .. ..+++.+.....+.+|++||++|++... .+.. .++..+.. ..+..++.
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 81 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDNKTGNKLPSYQYQEEWQKYYNILKESSVINKEKWFD 81 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccccccCCCcccccHHHHHHHHHHHHHhCCCCcceEEE
Confidence 578999995222 12 3355556666778999999999976521 1111 33333322 22356899
Q ss_pred EcCCCchh
Q 029935 111 LRGNHESR 118 (185)
Q Consensus 111 l~GNHE~~ 118 (185)
++||||.+
T Consensus 82 v~GNHD~~ 89 (256)
T cd07401 82 IRGNHDLF 89 (256)
T ss_pred eCCCCCcC
Confidence 99999985
No 74
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=98.12 E-value=1.2e-05 Score=65.07 Aligned_cols=72 Identities=13% Similarity=-0.017 Sum_probs=46.3
Q ss_pred CCEEEEeCCCCCH----------------HHHHHHHHhcCCC--CCCeEEEeccccCCCCCcH---HHHHHHHHHHHhC-
Q 029935 47 CPVTVCGDIHGQF----------------HDLVELFRIGGNA--PDTNYLFMGDYVDRGYYSV---ETVTLLVALKVRY- 104 (185)
Q Consensus 47 ~~i~vigDIHG~~----------------~~l~~ll~~~~~~--~~~~lv~lGD~vdrG~~~~---e~l~~l~~l~~~~- 104 (185)
-+++++||+|-.. ..++++++.+... ..+.+|++||+++.|.... +..+.+.+.-...
T Consensus 5 ~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (262)
T cd07395 5 FYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAMPGDELRERQVSDLKDVLSLLD 84 (262)
T ss_pred EEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCCcchhhHHHHHHHHHHHHhhcc
Confidence 3688999999653 1345666666543 5678999999999887642 1122222221121
Q ss_pred -CCcEEEEcCCCchh
Q 029935 105 -RDRITILRGNHESR 118 (185)
Q Consensus 105 -p~~v~~l~GNHE~~ 118 (185)
+-.++.++||||..
T Consensus 85 ~~vp~~~i~GNHD~~ 99 (262)
T cd07395 85 PDIPLVCVCGNHDVG 99 (262)
T ss_pred CCCcEEEeCCCCCCC
Confidence 34699999999973
No 75
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.07 E-value=7.3e-06 Score=64.12 Aligned_cols=69 Identities=20% Similarity=0.180 Sum_probs=39.1
Q ss_pred EEEeCCCC---CHHH---HHHHHHhcCCCCCCeEEEeccccCCC--CC------cHHHHHHHHHHHHhCCCcEEEEcCCC
Q 029935 50 TVCGDIHG---QFHD---LVELFRIGGNAPDTNYLFMGDYVDRG--YY------SVETVTLLVALKVRYRDRITILRGNH 115 (185)
Q Consensus 50 ~vigDIHG---~~~~---l~~ll~~~~~~~~~~lv~lGD~vdrG--~~------~~e~l~~l~~l~~~~p~~v~~l~GNH 115 (185)
++|||+|- .... +...++.......+.+|++||++|.- +. ..+.+..+.+.. ..+..++++.|||
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~v~GNH 79 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFDLWFGDDEVVPPAAHEVLAALLRLA-DRGTRVYYVPGNH 79 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEEEEecCCCCCChHHHHHHHHHHHHH-HCCCeEEEECCCc
Confidence 48999992 1111 22222222124678999999999841 11 112222333332 2345799999999
Q ss_pred chhh
Q 029935 116 ESRQ 119 (185)
Q Consensus 116 E~~~ 119 (185)
|...
T Consensus 80 D~~~ 83 (217)
T cd07398 80 DFLL 83 (217)
T ss_pred hHHH
Confidence 9854
No 76
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.06 E-value=1.2e-05 Score=64.62 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=40.3
Q ss_pred EEEeCCC--CCH---HHHHHHHHhcCCC-----CCCeEEEeccccCCCCC------------c----HHHHHHHHHHHHh
Q 029935 50 TVCGDIH--GQF---HDLVELFRIGGNA-----PDTNYLFMGDYVDRGYY------------S----VETVTLLVALKVR 103 (185)
Q Consensus 50 ~vigDIH--G~~---~~l~~ll~~~~~~-----~~~~lv~lGD~vdrG~~------------~----~e~l~~l~~l~~~ 103 (185)
++|||+| +.. ..+..+++.+... ..+.+|++||++|+... . ..+.+++.++..
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~- 80 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVYPGQEEELEILDIYEQYEEAAEYLSDVPS- 80 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccCCcchhhhhhhhHHHHHHHHHHHHHhccc-
Confidence 6899999 331 2334444443322 34899999999997311 0 123333333432
Q ss_pred CCCcEEEEcCCCchh
Q 029935 104 YRDRITILRGNHESR 118 (185)
Q Consensus 104 ~p~~v~~l~GNHE~~ 118 (185)
+-.++++.||||..
T Consensus 81 -~~~v~~ipGNHD~~ 94 (243)
T cd07386 81 -HIKIIIIPGNHDAV 94 (243)
T ss_pred -CCeEEEeCCCCCcc
Confidence 24599999999975
No 77
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=98.03 E-value=7e-06 Score=67.28 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=43.7
Q ss_pred CCCEEEEeCCCCC----HHHHHHHHHhcCCCCCCeEEEeccccCCCCCc-----HHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 46 KCPVTVCGDIHGQ----FHDLVELFRIGGNAPDTNYLFMGDYVDRGYYS-----VETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 46 ~~~i~vigDIHG~----~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~-----~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
.-+++++||.|.. ...+.++.+. ....+.++++||+++.+... ...++.+..+....| ++.++||||
T Consensus 4 ~~~f~v~gD~~~~~~~~~~~~~~l~~~--~~~~d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P--~~~~~GNHD 79 (294)
T cd00839 4 PFKFAVFGDMGQNTNNSTNTLDHLEKE--LGNYDAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVP--YMVTPGNHE 79 (294)
T ss_pred cEEEEEEEECCCCCCCcHHHHHHHHhc--cCCccEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCC--cEEcCcccc
Confidence 3479999999952 3333333333 24568899999999654332 222333333333444 899999999
Q ss_pred hhh
Q 029935 117 SRQ 119 (185)
Q Consensus 117 ~~~ 119 (185)
...
T Consensus 80 ~~~ 82 (294)
T cd00839 80 ADY 82 (294)
T ss_pred ccc
Confidence 853
No 78
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=97.99 E-value=2.7e-05 Score=66.68 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=55.0
Q ss_pred CCEEEEeCCCCC-------------HHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHh-C--CCcEEE
Q 029935 47 CPVTVCGDIHGQ-------------FHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVR-Y--RDRITI 110 (185)
Q Consensus 47 ~~i~vigDIHG~-------------~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~-~--p~~v~~ 110 (185)
||++.+||.|=. +.+|..+++.+.....|.+|+.||++|++.-|.+++..+.+.-.+ . .-.+++
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~ 80 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV 80 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEE
Confidence 689999999944 344566777777777899999999999988887776665543222 1 236999
Q ss_pred EcCCCchhh
Q 029935 111 LRGNHESRQ 119 (185)
Q Consensus 111 l~GNHE~~~ 119 (185)
|.||||..-
T Consensus 81 I~GNHD~~~ 89 (390)
T COG0420 81 IAGNHDSPS 89 (390)
T ss_pred ecCCCCchh
Confidence 999999963
No 79
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=97.97 E-value=9.5e-06 Score=64.18 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=46.2
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHH--------------------------HHHHHH
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETV--------------------------TLLVAL 100 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l--------------------------~~l~~l 100 (185)
.+|.++||.||.++.+.++.+.+.....|.+||+||++-....+.+-. .++..|
T Consensus 6 ~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~~~ff~~L 85 (255)
T PF14582_consen 6 RKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAEARSDEYERAQEEQREPDKSEINEEECYDSEALDKFFRIL 85 (255)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TCHHHHHHHHHHHTT----THHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccchhhhHHHHHhhhccCcchhhhhhhhhhhHHHHHHHHHHH
Confidence 479999999999999999999888788899999999986554444443 333333
Q ss_pred HHhCCCcEEEEcCCCchh
Q 029935 101 KVRYRDRITILRGNHESR 118 (185)
Q Consensus 101 ~~~~p~~v~~l~GNHE~~ 118 (185)
. ..+-.+.+|+||||..
T Consensus 86 ~-~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 86 G-ELGVPVFVVPGNMDAP 102 (255)
T ss_dssp H-CC-SEEEEE--TTS-S
T ss_pred H-hcCCcEEEecCCCCch
Confidence 3 3445799999999994
No 80
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=97.94 E-value=3.3e-05 Score=57.67 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=47.1
Q ss_pred CEEEEeCCC------------CCHHHHHHHH-HhcC--CCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEc
Q 029935 48 PVTVCGDIH------------GQFHDLVELF-RIGG--NAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILR 112 (185)
Q Consensus 48 ~i~vigDIH------------G~~~~l~~ll-~~~~--~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~ 112 (185)
.++++||.| .+.+...+++ +... ..|+|.+++|||+.-.-....+..+.+..| |+..++|+
T Consensus 5 mmyfisDtHfgh~nvi~~~pfsn~~ehd~vil~N~nntv~p~D~lwhLGDl~~~~n~~~~a~~IlerL----nGrkhlv~ 80 (186)
T COG4186 5 MMYFISDTHFGHKNVISMRPFSNPDEHDEVILSNWNNTVGPDDVLWHLGDLSSGANRERAAGLILERL----NGRKHLVP 80 (186)
T ss_pred EEEEecccccCCcceeecCCCCCHHHHhHHHHHhHHhcCCccceEEEecccccccchhhHHHHHHHHc----CCcEEEee
Confidence 479999999 3455554432 3222 357899999999987655555555555555 37899999
Q ss_pred CCCchhh
Q 029935 113 GNHESRQ 119 (185)
Q Consensus 113 GNHE~~~ 119 (185)
||||-.-
T Consensus 81 GNhDk~~ 87 (186)
T COG4186 81 GNHDKCH 87 (186)
T ss_pred CCCCCCc
Confidence 9999753
No 81
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=97.85 E-value=4.3e-05 Score=59.55 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=36.7
Q ss_pred cCCCCCCeEEEeccccCCCCCc--HHHHHHHHHHHHhCC----CcEEEEcCCCchh
Q 029935 69 GGNAPDTNYLFMGDYVDRGYYS--VETVTLLVALKVRYR----DRITILRGNHESR 118 (185)
Q Consensus 69 ~~~~~~~~lv~lGD~vdrG~~~--~e~l~~l~~l~~~~p----~~v~~l~GNHE~~ 118 (185)
+.....|.+||+||++|.|+.+ .+..+.+..++..++ ..+++|.||||.-
T Consensus 38 ~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 38 LNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred HhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 3445678999999999999964 346666666654322 3689999999975
No 82
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=97.77 E-value=5.5e-05 Score=60.71 Aligned_cols=66 Identities=27% Similarity=0.334 Sum_probs=45.1
Q ss_pred CEEEEeCCCCCH---------HHHHHHHHhcCCCCCC-eEEEeccccCCCCCcH-----HHHHHHHHHHHhCCCcEEEEc
Q 029935 48 PVTVCGDIHGQF---------HDLVELFRIGGNAPDT-NYLFMGDYVDRGYYSV-----ETVTLLVALKVRYRDRITILR 112 (185)
Q Consensus 48 ~i~vigDIHG~~---------~~l~~ll~~~~~~~~~-~lv~lGD~vdrG~~~~-----e~l~~l~~l~~~~p~~v~~l~ 112 (185)
+++.+||+||.+ ..+..+++.+.....+ .++..||+++..+.+. .+++.+..+. . .++..
T Consensus 2 ~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~~~~~~~~~~~l~~~g----~-d~~~~ 76 (252)
T cd00845 2 TILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPSTATKGEANIELMNALG----Y-DAVTI 76 (252)
T ss_pred EEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchhccCCcHHHHHHHhcC----C-CEEee
Confidence 689999999876 5567777776554445 5677999999877543 4555554432 2 34556
Q ss_pred CCCchh
Q 029935 113 GNHESR 118 (185)
Q Consensus 113 GNHE~~ 118 (185)
||||..
T Consensus 77 GNHe~d 82 (252)
T cd00845 77 GNHEFD 82 (252)
T ss_pred cccccc
Confidence 999974
No 83
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=97.76 E-value=8.1e-05 Score=56.80 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=34.2
Q ss_pred HhcCCCCCCeEEEeccccCCCCCcH--H---HHHHHHHHHHh-----CCCcEEEEcCCCchhh
Q 029935 67 RIGGNAPDTNYLFMGDYVDRGYYSV--E---TVTLLVALKVR-----YRDRITILRGNHESRQ 119 (185)
Q Consensus 67 ~~~~~~~~~~lv~lGD~vdrG~~~~--e---~l~~l~~l~~~-----~p~~v~~l~GNHE~~~ 119 (185)
..+...+.+.+|++||++|.+.... + .+..+.++... .+..+++|.||||...
T Consensus 39 ~~i~~~~pd~vi~lGDl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~GNHD~g~ 101 (171)
T cd07384 39 TALQRLKPDVVLFLGDLFDGGRIADSEEWEEYVKRFKKIFFLPSNGLEDIPVYYVPGNHDIGY 101 (171)
T ss_pred HHHHhcCCCEEEEeccccCCcEeCCHHHHHHHHHHHHHHhcccccccCCceEEEECCccccCC
Confidence 3444566789999999999887532 2 23333332211 1346999999999864
No 84
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.64 E-value=0.00012 Score=54.78 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=48.1
Q ss_pred EEEeCCCCCHHHHHHHHHhcC--CCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 50 TVCGDIHGQFHDLVELFRIGG--NAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~~~~--~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
+|+||+||+++.+-+-++.+. ..+-|.++++||+..-...+.+.-.+ ..-....|-..+++-||||.
T Consensus 1 LV~G~~~G~l~~~~~kv~~~~~k~gpFd~~ic~Gdff~~~~~~~~~~~y-~~g~~~~pipTyf~ggn~~~ 69 (150)
T cd07380 1 LVCGDVNGRLKALFEKVNTINKKKGPFDALLCVGDFFGDDEDDEELEAY-KDGSKKVPIPTYFLGGNNPG 69 (150)
T ss_pred CeeecCCccHHHHHHHHHHHhcccCCeeEEEEecCccCCccchhhHHHH-hcCCccCCCCEEEECCCCCC
Confidence 489999999999876665432 34568999999999766665333333 33334567789999999983
No 85
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=97.53 E-value=0.00041 Score=55.38 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=47.8
Q ss_pred ceecCCCEEEEeCCCCCHHHH----------------HHHHH-hcCCCCCCeEEEeccccCCCCCc----HHHHHHHHHH
Q 029935 42 VQPVKCPVTVCGDIHGQFHDL----------------VELFR-IGGNAPDTNYLFMGDYVDRGYYS----VETVTLLVAL 100 (185)
Q Consensus 42 ~~~~~~~i~vigDIHG~~~~l----------------~~ll~-~~~~~~~~~lv~lGD~vdrG~~~----~e~l~~l~~l 100 (185)
..-...+++|++|+|=.++.. .+.++ .+.....+++|++||+-.-.+.+ .+-+..+.++
T Consensus 15 ~~l~~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~~~~~~~e~~~~~~f~~~ 94 (235)
T COG1407 15 LYLPLGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEFGKSLRQEKEEVREFLEL 94 (235)
T ss_pred eEeccCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccccCccccccHHHHHHHHHH
Confidence 344567999999999544432 23333 34455678999999998754432 2233333333
Q ss_pred HHhCCCcEEEEcCCCchhh
Q 029935 101 KVRYRDRITILRGNHESRQ 119 (185)
Q Consensus 101 ~~~~p~~v~~l~GNHE~~~ 119 (185)
.... .+.+++||||...
T Consensus 95 ~~~~--evi~i~GNHD~~i 111 (235)
T COG1407 95 LDER--EVIIIRGNHDNGI 111 (235)
T ss_pred hccC--cEEEEeccCCCcc
Confidence 3222 4999999999854
No 86
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=97.51 E-value=0.00017 Score=58.94 Aligned_cols=66 Identities=20% Similarity=0.277 Sum_probs=42.3
Q ss_pred CEEEEeCCCCCH----------------HHHHHHHHhcCCCCCCeEEE-eccccCCCCCc-----------HHHHHHHHH
Q 029935 48 PVTVCGDIHGQF----------------HDLVELFRIGGNAPDTNYLF-MGDYVDRGYYS-----------VETVTLLVA 99 (185)
Q Consensus 48 ~i~vigDIHG~~----------------~~l~~ll~~~~~~~~~~lv~-lGD~vdrG~~~-----------~e~l~~l~~ 99 (185)
+|+.++|+||.+ ..+..+++.......+.+++ .||+++..+.+ ..+++.+..
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~ 81 (277)
T cd07410 2 RILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNA 81 (277)
T ss_pred eEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHh
Confidence 588999999986 33566676665444555555 89999865422 234555554
Q ss_pred HHHhCCCcEEEEcCCCchh
Q 029935 100 LKVRYRDRITILRGNHESR 118 (185)
Q Consensus 100 l~~~~p~~v~~l~GNHE~~ 118 (185)
+. .. ++..||||..
T Consensus 82 ~g----~d-~~~lGNHe~d 95 (277)
T cd07410 82 LG----YD-AGTLGNHEFN 95 (277)
T ss_pred cC----CC-EEeecccCcc
Confidence 43 23 5556999964
No 87
>PLN02533 probable purple acid phosphatase
Probab=97.45 E-value=0.00021 Score=62.14 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=44.1
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcH---HHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSV---ETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~---e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.-+++++||+|-. ......++.+.....|.++++||++..+.... +..+.+..+....| +..+.||||..
T Consensus 139 ~~~f~v~GDlG~~-~~~~~tl~~i~~~~pD~vl~~GDl~y~~~~~~~wd~f~~~i~~l~s~~P--~m~~~GNHE~~ 211 (427)
T PLN02533 139 PIKFAVSGDLGTS-EWTKSTLEHVSKWDYDVFILPGDLSYANFYQPLWDTFGRLVQPLASQRP--WMVTHGNHELE 211 (427)
T ss_pred CeEEEEEEeCCCC-cccHHHHHHHHhcCCCEEEEcCccccccchHHHHHHHHHHhhhHhhcCc--eEEeCcccccc
Confidence 4579999999632 22234555555556789999999997543321 12223333333444 89999999975
No 88
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=97.31 E-value=0.00079 Score=52.41 Aligned_cols=68 Identities=15% Similarity=0.157 Sum_probs=44.2
Q ss_pred EeCCCCCHHHHHHHHHhcC-CCCCCeEEEeccccCCCCCcHH-HHHHHHHHHHhC---------------------CCcE
Q 029935 52 CGDIHGQFHDLVELFRIGG-NAPDTNYLFMGDYVDRGYYSVE-TVTLLVALKVRY---------------------RDRI 108 (185)
Q Consensus 52 igDIHG~~~~l~~ll~~~~-~~~~~~lv~lGD~vdrG~~~~e-~l~~l~~l~~~~---------------------p~~v 108 (185)
-=|++|+-.=|.+..+.+. ....+.++||||++|.|--+-+ --+........+ ...+
T Consensus 22 rld~~~~D~YL~~~~~~~~~~l~Pd~V~fLGDLfd~~w~~D~ef~~~~~RF~~if~~~~~~~~~~~~~~~~~~~~~~i~~ 101 (193)
T cd08164 22 RLDLFGNDYFLGHIVSMMQFWLKPDAVVVLGDLFSSQWIDDEEFAKRADRYRRRFFGRNDWQVGNISLAARTFEDGKTPL 101 (193)
T ss_pred eehhhhhHHHHHHHHHHHHHhcCCCEEEEeccccCCCcccHHHHHHHHHHHHHHhcCCcccccccccccccccccCCceE
Confidence 3466777666777766443 4567899999999998764332 233444444332 1356
Q ss_pred EEEcCCCchhh
Q 029935 109 TILRGNHESRQ 119 (185)
Q Consensus 109 ~~l~GNHE~~~ 119 (185)
+.|.||||.-.
T Consensus 102 i~V~GNHDIG~ 112 (193)
T cd08164 102 INIAGNHDVGY 112 (193)
T ss_pred EEECCcccCCC
Confidence 89999999853
No 89
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=97.26 E-value=0.00048 Score=52.79 Aligned_cols=68 Identities=22% Similarity=0.308 Sum_probs=46.4
Q ss_pred CCEEEEeCCC-----------------CCHHHHHHHHHhcCCCCCCeEEEeccccC--CCCCcHHHHHHHHHHHHhCCCc
Q 029935 47 CPVTVCGDIH-----------------GQFHDLVELFRIGGNAPDTNYLFMGDYVD--RGYYSVETVTLLVALKVRYRDR 107 (185)
Q Consensus 47 ~~i~vigDIH-----------------G~~~~l~~ll~~~~~~~~~~lv~lGD~vd--rG~~~~e~l~~l~~l~~~~p~~ 107 (185)
|+++.|+|+| |.-++..+-+... -.++|.++.-||+-- |=++..+-+.++-.| |+.
T Consensus 1 M~iyaiaDLHLa~~~pKpM~vFGe~W~gh~ekI~k~W~~~-v~~eDiVllpGDiSWaM~l~ea~~Dl~~i~~L----PG~ 75 (230)
T COG1768 1 MRIYAIADLHLALGVPKPMEVFGEPWSGHHEKIKKHWRSK-VSPEDIVLLPGDISWAMRLEEAEEDLRFIGDL----PGT 75 (230)
T ss_pred CceeeeehhhHhhCCCCceeecCCcccCchHHHHHHHHhc-CChhhEEEecccchhheechhhhhhhhhhhcC----CCc
Confidence 6788888888 3334343333322 356788888999853 455666666666655 578
Q ss_pred EEEEcCCCchhh
Q 029935 108 ITILRGNHESRQ 119 (185)
Q Consensus 108 v~~l~GNHE~~~ 119 (185)
-+++|||||.+.
T Consensus 76 K~m~rGNHDYWw 87 (230)
T COG1768 76 KYMIRGNHDYWW 87 (230)
T ss_pred EEEEecCCcccc
Confidence 899999999974
No 90
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=97.22 E-value=0.001 Score=54.09 Aligned_cols=69 Identities=20% Similarity=0.220 Sum_probs=40.8
Q ss_pred CEEEEeCCCCC--H--HHHHHH-HHhcCCCCCCeEEEecccc-CCCCCcH------HHHHHHHH-HHHhCCCcEEEEcCC
Q 029935 48 PVTVCGDIHGQ--F--HDLVEL-FRIGGNAPDTNYLFMGDYV-DRGYYSV------ETVTLLVA-LKVRYRDRITILRGN 114 (185)
Q Consensus 48 ~i~vigDIHG~--~--~~l~~l-l~~~~~~~~~~lv~lGD~v-drG~~~~------e~l~~l~~-l~~~~p~~v~~l~GN 114 (185)
+++++||.=.. . .++... .+.+...+.+.+|++||++ +-|..+. +.+..+.. +. ....++.++||
T Consensus 2 ~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~--~~~P~~~v~GN 79 (277)
T cd07378 2 RFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSVDDPRFETTFEDVYSAPS--LQVPWYLVLGN 79 (277)
T ss_pred eEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCCcchHHHHHHHHHccchh--hcCCeEEecCC
Confidence 67899998653 1 233333 3344445678899999987 5554221 22222221 22 22359999999
Q ss_pred Cchh
Q 029935 115 HESR 118 (185)
Q Consensus 115 HE~~ 118 (185)
||..
T Consensus 80 HD~~ 83 (277)
T cd07378 80 HDYS 83 (277)
T ss_pred cccC
Confidence 9975
No 91
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=97.18 E-value=0.0037 Score=50.83 Aligned_cols=47 Identities=19% Similarity=0.210 Sum_probs=29.4
Q ss_pred CCCCeEEEeccccCCCCCcH--HHHHHHHHHHHhC---C--CcEEEEcCCCchh
Q 029935 72 APDTNYLFMGDYVDRGYYSV--ETVTLLVALKVRY---R--DRITILRGNHESR 118 (185)
Q Consensus 72 ~~~~~lv~lGD~vdrG~~~~--e~l~~l~~l~~~~---p--~~v~~l~GNHE~~ 118 (185)
...|.+||+||++|.|.... +-.+.....+..+ + ..++.|.||||.-
T Consensus 44 l~PD~vv~lGDL~d~G~~~~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDig 97 (257)
T cd08163 44 LKPDSTIFLGDLFDGGRDWADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDIG 97 (257)
T ss_pred cCCCEEEEecccccCCeeCcHHHHHHHHHHHHHHhcCCCccceEEEeCCCcccC
Confidence 35789999999999987532 1111122222221 1 2489999999963
No 92
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=97.15 E-value=0.00083 Score=54.36 Aligned_cols=66 Identities=20% Similarity=0.217 Sum_probs=42.3
Q ss_pred CEEEEeCCCCCH----------HHHHHHHHhcCCCCCCeEEEeccccCCCCCc-----HHHHHHHHHHHHhCCCcEEEEc
Q 029935 48 PVTVCGDIHGQF----------HDLVELFRIGGNAPDTNYLFMGDYVDRGYYS-----VETVTLLVALKVRYRDRITILR 112 (185)
Q Consensus 48 ~i~vigDIHG~~----------~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~-----~e~l~~l~~l~~~~p~~v~~l~ 112 (185)
+++.++|+||.+ ..+..+++.....+.+.++..||.++..+.+ ..+++.+..+. ..+ ...
T Consensus 2 ~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~ln~~g----~d~-~~~ 76 (257)
T cd07408 2 TILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPISDLDKGETIIKIMNAVG----YDA-VTP 76 (257)
T ss_pred EEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchhhhhcCCcHHHHHHHhcC----CcE-Ecc
Confidence 688999999974 4456667665544555677799999875532 23344443332 244 456
Q ss_pred CCCchh
Q 029935 113 GNHESR 118 (185)
Q Consensus 113 GNHE~~ 118 (185)
||||.-
T Consensus 77 GNHefd 82 (257)
T cd07408 77 GNHEFD 82 (257)
T ss_pred cccccc
Confidence 999964
No 93
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=97.13 E-value=0.0026 Score=53.30 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCEEEEeCCCCCHH-----------------HHH--HHH-HhcCCCCCCeEEEeccccCCCC--CcHHHHHHHHHHHHhC
Q 029935 47 CPVTVCGDIHGQFH-----------------DLV--ELF-RIGGNAPDTNYLFMGDYVDRGY--YSVETVTLLVALKVRY 104 (185)
Q Consensus 47 ~~i~vigDIHG~~~-----------------~l~--~ll-~~~~~~~~~~lv~lGD~vdrG~--~~~e~l~~l~~l~~~~ 104 (185)
-||+.++|+|=... ++. ..+ +.++....|.+||+||.|+.-. +...++....+-.+.+
T Consensus 54 fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~ 133 (379)
T KOG1432|consen 54 FKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDR 133 (379)
T ss_pred eEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhc
Confidence 37999999993222 111 112 2333456789999999998621 2333444444444455
Q ss_pred CCcEEEEcCCCchh
Q 029935 105 RDRITILRGNHESR 118 (185)
Q Consensus 105 p~~v~~l~GNHE~~ 118 (185)
.-.+..+.||||..
T Consensus 134 ~IPwA~~lGNHDde 147 (379)
T KOG1432|consen 134 KIPWAAVLGNHDDE 147 (379)
T ss_pred CCCeEEEecccccc
Confidence 55789999999984
No 94
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=97.00 E-value=0.00088 Score=55.22 Aligned_cols=66 Identities=21% Similarity=0.311 Sum_probs=42.4
Q ss_pred CEEEEeCCCCCHH--------------HHHHHHHhcCCCC-CCeEEEeccccCCCCC-c-----HHHHHHHHHHHHhCCC
Q 029935 48 PVTVCGDIHGQFH--------------DLVELFRIGGNAP-DTNYLFMGDYVDRGYY-S-----VETVTLLVALKVRYRD 106 (185)
Q Consensus 48 ~i~vigDIHG~~~--------------~l~~ll~~~~~~~-~~~lv~lGD~vdrG~~-~-----~e~l~~l~~l~~~~p~ 106 (185)
+|+.++|+||++. .+..+++...... ...++..||.+...+. + ..+++.+..+. -
T Consensus 2 ~il~tnD~Hg~~~~~~~~~~~~~gG~arl~~~i~~~r~~~~~~l~ld~GD~~~gs~~~s~~~~g~~~~~~~n~~g----~ 77 (288)
T cd07412 2 QILAINDFHGRLEPPGKVVTVPAGGAAYLAAYLDEARAQNPNSLFVSAGDLIGASPFESALLQDEPTIEALNAMG----V 77 (288)
T ss_pred eEEEEeccccCccCCCCccccccccHHHHHHHHHHHHhcCCCeEEEeCCcccccccchhhcccCCcHHHHHHhhC----C
Confidence 5889999998754 3566666655433 3466669999976553 2 23455555544 2
Q ss_pred cEEEEcCCCchh
Q 029935 107 RITILRGNHESR 118 (185)
Q Consensus 107 ~v~~l~GNHE~~ 118 (185)
. .+..||||.-
T Consensus 78 D-a~t~GNHefd 88 (288)
T cd07412 78 D-ASAVGNHEFD 88 (288)
T ss_pred e-eeeecccccc
Confidence 3 4556999963
No 95
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=96.83 E-value=0.0018 Score=58.11 Aligned_cols=64 Identities=19% Similarity=0.280 Sum_probs=47.0
Q ss_pred CCHHHHHHHHH-hcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhC
Q 029935 57 GQFHDLVELFR-IGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYG 125 (185)
Q Consensus 57 G~~~~l~~ll~-~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~ 125 (185)
|..+.|...+. .+...-.|++-++||+.||||.+-.+++.|+... ++-.-.||||...+....|
T Consensus 167 ~~a~~fI~al~~lIqrL~VDhLHIvGDIyDRGp~pd~ImD~Lm~~h-----svDIQWGNHDIlWMGAa~G 231 (640)
T PF06874_consen 167 GRADEFIIALSELIQRLAVDHLHIVGDIYDRGPRPDKIMDRLMNYH-----SVDIQWGNHDILWMGAAAG 231 (640)
T ss_pred CcHHHHHHHHHHHHHHHhhhheeecccccCCCCChhHHHHHHhcCC-----CccccccchHHHHHHHhhC
Confidence 34444443332 2333446899999999999999999999998653 6889999999987765554
No 96
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=96.77 E-value=0.0061 Score=52.43 Aligned_cols=74 Identities=19% Similarity=0.339 Sum_probs=48.7
Q ss_pred CCCEEEEeCCC--CCH---------HH------HHHHHHhc-CCCCCCeEEEeccccCCCCC--cHHHHHHHHHHHHhCC
Q 029935 46 KCPVTVCGDIH--GQF---------HD------LVELFRIG-GNAPDTNYLFMGDYVDRGYY--SVETVTLLVALKVRYR 105 (185)
Q Consensus 46 ~~~i~vigDIH--G~~---------~~------l~~ll~~~-~~~~~~~lv~lGD~vdrG~~--~~e~l~~l~~l~~~~p 105 (185)
..|+..|+|-| |+. +. |.+.+... .....|.++||||++|-|.. ..|--+....++..++
T Consensus 48 ~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDeG~~~~~eEf~~~~~RfkkIf~ 127 (410)
T KOG3662|consen 48 STKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDEGQWAGDEEFKKRYERFKKIFG 127 (410)
T ss_pred ceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEeccccccCccCChHHHHHHHHHHHHhhC
Confidence 45899999976 422 11 22233222 23456788999999998764 4555566666666555
Q ss_pred C----cEEEEcCCCchhh
Q 029935 106 D----RITILRGNHESRQ 119 (185)
Q Consensus 106 ~----~v~~l~GNHE~~~ 119 (185)
. ++..+.||||--.
T Consensus 128 ~k~~~~~~~i~GNhDIGf 145 (410)
T KOG3662|consen 128 RKGNIKVIYIAGNHDIGF 145 (410)
T ss_pred CCCCCeeEEeCCcccccc
Confidence 4 7899999999854
No 97
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=96.70 E-value=0.0027 Score=51.61 Aligned_cols=65 Identities=22% Similarity=0.197 Sum_probs=39.1
Q ss_pred CEEEEeCCCCCH----------------------HHHHHHHHhcCCC-CCCeE-EEeccccCCCCCc-----HHHHHHHH
Q 029935 48 PVTVCGDIHGQF----------------------HDLVELFRIGGNA-PDTNY-LFMGDYVDRGYYS-----VETVTLLV 98 (185)
Q Consensus 48 ~i~vigDIHG~~----------------------~~l~~ll~~~~~~-~~~~l-v~lGD~vdrG~~~-----~e~l~~l~ 98 (185)
.++.++|+||.+ ..+..++++.... ..+.+ +..||+++..+.+ ..+++.+.
T Consensus 2 ~il~t~D~Hg~~~~~~~~~~~~~~~~~~~~~gG~~r~~~~v~~~~~~~~~~~l~l~~GD~~~gs~~~~~~~g~~~~~~l~ 81 (264)
T cd07411 2 TLLHINDLHGQLIPHYELEPSNLLARVFGMAGGFAHIATLIKRIRAERNPNTLLLDGGDTWQGSGEALYTRGQAMVDALN 81 (264)
T ss_pred EEEEEcccccCccccccccccccccccccccCcHHHHHHHHHHHHHhcCCCeEEEeCCCccCCChHHhhcCChhHHHHHH
Confidence 467888999864 3345566665444 45555 4599999876543 23445444
Q ss_pred HHHHhCCCcEEEEcCCCchh
Q 029935 99 ALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 99 ~l~~~~p~~v~~l~GNHE~~ 118 (185)
.+. -. .+. ||||..
T Consensus 82 ~~g----~d-a~~-GNHefd 95 (264)
T cd07411 82 ALG----VD-AMV-GHWEFT 95 (264)
T ss_pred hhC----Ce-EEe-cccccc
Confidence 432 22 333 999964
No 98
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=96.54 E-value=0.0063 Score=49.94 Aligned_cols=66 Identities=18% Similarity=0.213 Sum_probs=40.1
Q ss_pred CEEEEeCCCCCH---------------------HHHHHHHHhcCCCCCCe-EEEeccccCCCCC-----cHHHHHHHHHH
Q 029935 48 PVTVCGDIHGQF---------------------HDLVELFRIGGNAPDTN-YLFMGDYVDRGYY-----SVETVTLLVAL 100 (185)
Q Consensus 48 ~i~vigDIHG~~---------------------~~l~~ll~~~~~~~~~~-lv~lGD~vdrG~~-----~~e~l~~l~~l 100 (185)
+++.++|+||++ ..+..+++.......+. ++..||.+...+. ....++.+..+
T Consensus 2 ~il~tnD~Hg~l~~~~~~~~~~~~~~~~~~gG~ar~~~~v~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~ 81 (281)
T cd07409 2 TILHTNDHHSRFEETNPSGGVKDAATEKCYGGFARVATLVKELRAENPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL 81 (281)
T ss_pred EEEEeccccccccccCccccccccccccccCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc
Confidence 578899999864 44556666654433444 4449999987653 23344444443
Q ss_pred HHhCCCcEEEEcCCCchh
Q 029935 101 KVRYRDRITILRGNHESR 118 (185)
Q Consensus 101 ~~~~p~~v~~l~GNHE~~ 118 (185)
. -.+. ..||||.-
T Consensus 82 g----~D~~-~lGNHefd 94 (281)
T cd07409 82 G----YDAM-TLGNHEFD 94 (281)
T ss_pred C----CCEE-Eecccccc
Confidence 3 2344 45999974
No 99
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=96.43 E-value=0.0062 Score=49.33 Aligned_cols=66 Identities=23% Similarity=0.200 Sum_probs=43.7
Q ss_pred CEEEEeCCC----------CCHHHHHHHHHhcCCCCCC-eEEEeccccCCCCC-----cHHHHHHHHHHHHhCCCcEEEE
Q 029935 48 PVTVCGDIH----------GQFHDLVELFRIGGNAPDT-NYLFMGDYVDRGYY-----SVETVTLLVALKVRYRDRITIL 111 (185)
Q Consensus 48 ~i~vigDIH----------G~~~~l~~ll~~~~~~~~~-~lv~lGD~vdrG~~-----~~e~l~~l~~l~~~~p~~v~~l 111 (185)
+++-+.|+| |.+..+..+++.......+ .++..||+++..+. ...+++.+..+. --+..
T Consensus 2 ~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~-----~d~~~ 76 (257)
T cd07406 2 TILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG-----VDLAC 76 (257)
T ss_pred eEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchhhcCCccHHHHHHhcC-----CcEEe
Confidence 466777887 4567777788776544445 66669999987653 245666655553 23567
Q ss_pred cCCCchh
Q 029935 112 RGNHESR 118 (185)
Q Consensus 112 ~GNHE~~ 118 (185)
.||||..
T Consensus 77 ~GNHefd 83 (257)
T cd07406 77 FGNHEFD 83 (257)
T ss_pred ecccccc
Confidence 8999973
No 100
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=96.41 E-value=0.0084 Score=49.29 Aligned_cols=70 Identities=21% Similarity=0.202 Sum_probs=42.7
Q ss_pred EEEeCCCCC--HHHHHHHHHhcCCC--CCCeEEEeccccCCCCCcH--H------HHHHHHHHHHhCCC-cEEEEcCCCc
Q 029935 50 TVCGDIHGQ--FHDLVELFRIGGNA--PDTNYLFMGDYVDRGYYSV--E------TVTLLVALKVRYRD-RITILRGNHE 116 (185)
Q Consensus 50 ~vigDIHG~--~~~l~~ll~~~~~~--~~~~lv~lGD~vdrG~~~~--e------~l~~l~~l~~~~p~-~v~~l~GNHE 116 (185)
--.|+-.-+ ...++.+++.+... +.+.+|+.||+++.+.... + .-.+...++..+|. .++.+.||||
T Consensus 41 ~~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~pv~~~~GNHD 120 (296)
T cd00842 41 GPWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLVLISISNLTSLLKKAFPDTPVYPALGNHD 120 (296)
T ss_pred CCCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhhchhHHHHHHHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 345555422 24456667665544 6789999999998775431 1 12223334443333 6999999999
Q ss_pred hhh
Q 029935 117 SRQ 119 (185)
Q Consensus 117 ~~~ 119 (185)
...
T Consensus 121 ~~p 123 (296)
T cd00842 121 SYP 123 (296)
T ss_pred CCc
Confidence 864
No 101
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=96.36 E-value=0.0092 Score=48.77 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=50.2
Q ss_pred CCEEEEeCCCCC--HHHHHHHHHhcCC-CCCCeEEEeccccCCC-CCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 47 CPVTVCGDIHGQ--FHDLVELFRIGGN-APDTNYLFMGDYVDRG-YYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 47 ~~i~vigDIHG~--~~~l~~ll~~~~~-~~~~~lv~lGD~vdrG-~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
|||+++|||=|. ...+...|..+.. .+.|.+|..||....| .-+.++.+.|.+.. -+++.+ |||+.-
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG~Gi~~~~~~~L~~~G----vDviT~-GNH~~D 71 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHGKGLTLKIYEFLKQSG----VNYITM-GNHTWF 71 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCCCCCCHHHHHHHHhcC----CCEEEc-cchhcc
Confidence 689999999999 5667777776653 3457788899999766 45677887777654 356666 999974
No 102
>PF08321 PPP5: PPP5 TPR repeat region; InterPro: IPR013235 This domain is specific to the PPP5 subfamily of serine/threonine phosphatases.; GO: 0004722 protein serine/threonine phosphatase activity, 0046872 metal ion binding; PDB: 3ICF_B 3H60_B 3H63_A 3H66_A 3H62_B 1A17_A 1S95_B 3H69_A 3H68_D 3H64_D ....
Probab=96.21 E-value=0.012 Score=40.69 Aligned_cols=42 Identities=17% Similarity=0.097 Sum_probs=34.2
Q ss_pred ChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCccee
Q 029935 3 SQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQP 44 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 44 (185)
|.+.+++|++.++++..++...+..++.++.++|+++|++++
T Consensus 53 t~efv~~mie~FK~~K~Lhkkyv~~Il~~~~~llk~~PslVe 94 (95)
T PF08321_consen 53 TLEFVKAMIEWFKNQKKLHKKYVYQILLEAKKLLKQLPSLVE 94 (95)
T ss_dssp -HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHHTS-SEEE
T ss_pred CHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHhCcCccC
Confidence 567899999999999999999999999999999999999975
No 103
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=96.02 E-value=0.0077 Score=58.60 Aligned_cols=66 Identities=20% Similarity=0.265 Sum_probs=43.6
Q ss_pred CCEEEEeCCCCCH---HHHHHHHHhcCCCCCCeEEE-eccccCCCCCc-----HHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 47 CPVTVCGDIHGQF---HDLVELFRIGGNAPDTNYLF-MGDYVDRGYYS-----VETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 47 ~~i~vigDIHG~~---~~l~~ll~~~~~~~~~~lv~-lGD~vdrG~~~-----~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
.+|+.++|+||.+ ..+..+++.......+.+++ .||+++..+.+ ...++.+..+. --....||||.
T Consensus 661 l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~lg-----~d~~~~GNHEf 735 (1163)
T PRK09419 661 LTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYSNLLKGLPVLKMMKEMG-----YDASTFGNHEF 735 (1163)
T ss_pred EEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchhhhcCChHHHHHHhCcC-----CCEEEeccccc
Confidence 4799999999875 44555666554444455555 99999876643 24555554443 23568999996
No 104
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=95.79 E-value=0.014 Score=48.12 Aligned_cols=66 Identities=18% Similarity=0.033 Sum_probs=37.9
Q ss_pred CEEEEeCCCCCHHH----------HHHHHHhcCC-----CCCCeEEEeccccCCCCC-----cHHHHHHHHHHHHhCCCc
Q 029935 48 PVTVCGDIHGQFHD----------LVELFRIGGN-----APDTNYLFMGDYVDRGYY-----SVETVTLLVALKVRYRDR 107 (185)
Q Consensus 48 ~i~vigDIHG~~~~----------l~~ll~~~~~-----~~~~~lv~lGD~vdrG~~-----~~e~l~~l~~l~~~~p~~ 107 (185)
+|+.++|+||++.. +..+++.... .+...++-.||.+...+. ...+++.+..+. -.
T Consensus 2 tIl~tnD~Hg~l~~~~~~~gG~ar~a~~i~~~r~~~~~~~~~~l~ld~GD~~~Gs~~~~~~~g~~~~~~~n~~g----~D 77 (285)
T cd07405 2 TILHTNDHHGHFWPNGTGEYGLAAQKTLVDGVRREVAAQGGYVLLLSGGDINTGVPESDLQDAEPDFRGMNLVG----YD 77 (285)
T ss_pred EEEEEcccccccccCCCCCccHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCchhHHhcCcchHHHHHHhhC----Cc
Confidence 57889999997533 4455554432 233345559999843332 223445454443 23
Q ss_pred EEEEcCCCchh
Q 029935 108 ITILRGNHESR 118 (185)
Q Consensus 108 v~~l~GNHE~~ 118 (185)
+. ..||||.-
T Consensus 78 a~-~~GNHEfD 87 (285)
T cd07405 78 AM-AVGNHEFD 87 (285)
T ss_pred EE-eecccccc
Confidence 44 44999975
No 105
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=94.93 E-value=0.074 Score=43.23 Aligned_cols=66 Identities=17% Similarity=0.127 Sum_probs=46.1
Q ss_pred CEEEEeCCCCCHHH--HHHHHHhcCC-CCCCeEEEeccccCCC-CCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 48 PVTVCGDIHGQFHD--LVELFRIGGN-APDTNYLFMGDYVDRG-YYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 48 ~i~vigDIHG~~~~--l~~ll~~~~~-~~~~~lv~lGD~vdrG-~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
|+.+||||=|.... +...+..+.. .+.|.+|..||....| +-+.++.+.+..+. -.+..+ |||+.-
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~gg~gl~~~~~~~L~~~G----~D~iTl-GNH~fD 70 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAGGKGITPKIAKELLSAG----VDVITM-GNHTWD 70 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccCCCCCCHHHHHHHHhcC----CCEEEe-cccccC
Confidence 68999999997654 4556655543 3456777799998766 46677777777665 345555 999864
No 106
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=94.90 E-value=0.084 Score=46.90 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=47.0
Q ss_pred ecCCCEEEEeCCCC------------CHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHH
Q 029935 44 PVKCPVTVCGDIHG------------QFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALK 101 (185)
Q Consensus 44 ~~~~~i~vigDIHG------------~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~ 101 (185)
+...||.|-+|+|= .+.+|..+|..+.....|.++.-||++.-..-|..+|..+.++-
T Consensus 11 entirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lL 80 (646)
T KOG2310|consen 11 ENTIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELL 80 (646)
T ss_pred ccceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHH
Confidence 34569999999993 45678889998888889999999999998888888777665543
No 107
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=94.85 E-value=0.043 Score=45.85 Aligned_cols=66 Identities=24% Similarity=0.214 Sum_probs=40.9
Q ss_pred CEEEEeCCCCCHH------HHHHHHHhcCC-----CCCCeEEEeccccCCCCC-------------cHHHHHHHHHHHHh
Q 029935 48 PVTVCGDIHGQFH------DLVELFRIGGN-----APDTNYLFMGDYVDRGYY-------------SVETVTLLVALKVR 103 (185)
Q Consensus 48 ~i~vigDIHG~~~------~l~~ll~~~~~-----~~~~~lv~lGD~vdrG~~-------------~~e~l~~l~~l~~~ 103 (185)
+|+-+.|+||++. .+..+++.... .+...++..||.+..++. ....++++..+..
T Consensus 2 ~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~qGs~~~~~~~~~~~~~~~G~~~i~~mN~~g~- 80 (313)
T cd08162 2 QLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFIPGPFFNASLDPLIYGDPGRADILILNALGV- 80 (313)
T ss_pred eEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCccccCchhhhhhccccccccCChHHHHHHhccCC-
Confidence 4788999999853 34445554432 233456669999875543 3345555555542
Q ss_pred CCCcEEEEcCCCchh
Q 029935 104 YRDRITILRGNHESR 118 (185)
Q Consensus 104 ~p~~v~~l~GNHE~~ 118 (185)
=....||||.-
T Consensus 81 ----Da~tlGNHEFD 91 (313)
T cd08162 81 ----QAIALGNHEFD 91 (313)
T ss_pred ----cEEeccccccc
Confidence 35678999963
No 108
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=94.71 E-value=0.096 Score=44.42 Aligned_cols=73 Identities=19% Similarity=0.325 Sum_probs=48.0
Q ss_pred CCEEEEeCCCCCHHHHHHHH---HhcCCCCCCeEEEeccccC-CCCCcHHH------HHHHHHH------HHhCCCcEEE
Q 029935 47 CPVTVCGDIHGQFHDLVELF---RIGGNAPDTNYLFMGDYVD-RGYYSVET------VTLLVAL------KVRYRDRITI 110 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll---~~~~~~~~~~lv~lGD~vd-rG~~~~e~------l~~l~~l------~~~~p~~v~~ 110 (185)
|||.|=|=.||.++.+-+.+ ++.+..+.|.++++||+=. |......+ ...+... ...+|--.++
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavRn~~D~~siavPpKy~~m~~F~~YYsge~~APVlTIF 80 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVRNEQDLKSIAVPPKYRRMGDFYKYYSGEIKAPVLTIF 80 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhcchhhcccccCCHHHHHHHHHHHHhCCcccCceeEEE
Confidence 68999999999999887444 4555668899999999743 22211111 1112211 1246656789
Q ss_pred EcCCCchhh
Q 029935 111 LRGNHESRQ 119 (185)
Q Consensus 111 l~GNHE~~~ 119 (185)
|-||||.+.
T Consensus 81 IGGNHEAsn 89 (456)
T KOG2863|consen 81 IGGNHEASN 89 (456)
T ss_pred ecCchHHHH
Confidence 999999864
No 109
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=94.52 E-value=0.078 Score=41.26 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=41.3
Q ss_pred EEEEeCCCCC-----HHHHHHHHHhcC-CCCCCeEEEeccccCCCCCcH----------HHHHHHHHHHHh-----CCCc
Q 029935 49 VTVCGDIHGQ-----FHDLVELFRIGG-NAPDTNYLFMGDYVDRGYYSV----------ETVTLLVALKVR-----YRDR 107 (185)
Q Consensus 49 i~vigDIHG~-----~~~l~~ll~~~~-~~~~~~lv~lGD~vdrG~~~~----------e~l~~l~~l~~~-----~p~~ 107 (185)
|+++||+|-. ++.|.++++.+. ....+.+|++|+++|.-.... .....+..+... ..-+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 80 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSGSVPDSYSFEEDFLKELDSFLESILPSTQ 80 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---HHCCHHHHHHHHCHHHHCCCHCCSE
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccccccccccccHHHHHHHHHHHhhcccccE
Confidence 5788888854 566777888777 677789999999999622111 111122222111 1237
Q ss_pred EEEEcCCCchhhh
Q 029935 108 ITILRGNHESRQI 120 (185)
Q Consensus 108 v~~l~GNHE~~~~ 120 (185)
++++.|+||-...
T Consensus 81 vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 81 VVLVPGPNDPTSS 93 (209)
T ss_dssp EEEE--TTCTT-S
T ss_pred EEEeCCCcccccc
Confidence 9999999998654
No 110
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=94.51 E-value=0.052 Score=48.33 Aligned_cols=70 Identities=27% Similarity=0.290 Sum_probs=45.2
Q ss_pred cCCCEEEEeCCCCCHH---------------HHHHHHHhcCCCCCC-eEEEeccccCCCC------CcHHHHHHHHHHHH
Q 029935 45 VKCPVTVCGDIHGQFH---------------DLVELFRIGGNAPDT-NYLFMGDYVDRGY------YSVETVTLLVALKV 102 (185)
Q Consensus 45 ~~~~i~vigDIHG~~~---------------~l~~ll~~~~~~~~~-~lv~lGD~vdrG~------~~~e~l~~l~~l~~ 102 (185)
.+-+|+-+.|+||++. ....++++......+ .+|-.||+++..+ .....++.+..++-
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~~~~g~~~~~~mN~m~y 104 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDYLTKGEPTVDLLNALGY 104 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCccccccccCCChHHHHHhhcCC
Confidence 3457999999999988 333444444433334 4455999998833 33456666666541
Q ss_pred hCCCcEEEEcCCCchhh
Q 029935 103 RYRDRITILRGNHESRQ 119 (185)
Q Consensus 103 ~~p~~v~~l~GNHE~~~ 119 (185)
=....||||.-+
T Consensus 105 -----Da~tiGNHEFd~ 116 (517)
T COG0737 105 -----DAMTLGNHEFDY 116 (517)
T ss_pred -----cEEeeccccccc
Confidence 357779999853
No 111
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=94.42 E-value=0.023 Score=49.54 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=37.0
Q ss_pred CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhh
Q 029935 73 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQIT 121 (185)
Q Consensus 73 ~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~ 121 (185)
-.|++=++||+-||||.+-.+++.|.... ++-+-.||||...+.
T Consensus 190 vVDhLHiVGDIyDRGP~pd~Imd~L~~yh-----svDiQWGNHDilWmg 233 (648)
T COG3855 190 VVDHLHIVGDIYDRGPYPDKIMDTLINYH-----SVDIQWGNHDILWMG 233 (648)
T ss_pred hhhheeeecccccCCCCchHHHHHHhhcc-----cccccccCcceEEee
Confidence 46788899999999999999999887663 578889999986543
No 112
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=94.00 E-value=0.074 Score=51.96 Aligned_cols=67 Identities=21% Similarity=0.274 Sum_probs=41.7
Q ss_pred CCEEEEeCCCCCHH----------------HHHHHHHhcCCCCCCeEEE-eccccCCCCC--------------cHHHHH
Q 029935 47 CPVTVCGDIHGQFH----------------DLVELFRIGGNAPDTNYLF-MGDYVDRGYY--------------SVETVT 95 (185)
Q Consensus 47 ~~i~vigDIHG~~~----------------~l~~ll~~~~~~~~~~lv~-lGD~vdrG~~--------------~~e~l~ 95 (185)
-+|+.++|+||++. .+..+++.+.....+.+++ .||.+...|- ...+++
T Consensus 42 l~il~tnD~Hg~l~~~~y~~~~~~~~~Glar~at~i~~~r~~~~n~llld~GD~~qGs~l~~~~~~~~~~~~~~~~~~i~ 121 (1163)
T PRK09419 42 IQILATTDLHGNFMDYDYASDKETTGFGLAQTATLIKKARKENPNTLLVDNGDLIQGNPLGEYAVKDNILFKNKTHPMIK 121 (1163)
T ss_pred EEEEEEecccccccccccccCCCCCCcCHHHHHHHHHHHHHhCCCeEEEeCCCccCCChhhhHHhhhccccCCCcCHHHH
Confidence 47999999999853 3344555554333344555 9999986551 223455
Q ss_pred HHHHHHHhCCCcEEEEcCCCchh
Q 029935 96 LLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 96 ~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.+..+. --....||||.-
T Consensus 122 ~mN~lg-----yDa~~lGNHEFd 139 (1163)
T PRK09419 122 AMNALG-----YDAGTLGNHEFN 139 (1163)
T ss_pred HHhhcC-----ccEEeecccccc
Confidence 555443 235668999974
No 113
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=93.88 E-value=0.1 Score=42.97 Aligned_cols=67 Identities=18% Similarity=0.107 Sum_probs=38.5
Q ss_pred CCEEEEeCCCCCHH-------------HHHHHHHhc----CCCCCC-eEEEeccccCCCCCc-------HHHHHHHHHHH
Q 029935 47 CPVTVCGDIHGQFH-------------DLVELFRIG----GNAPDT-NYLFMGDYVDRGYYS-------VETVTLLVALK 101 (185)
Q Consensus 47 ~~i~vigDIHG~~~-------------~l~~ll~~~----~~~~~~-~lv~lGD~vdrG~~~-------~e~l~~l~~l~ 101 (185)
-+|+-++|+||.+. .+.++.+.+ +....+ .++..||.+..-+.+ ...++.+..+.
T Consensus 6 ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~~~~~~~~g~~~~~~mN~mg 85 (282)
T cd07407 6 INFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGLSDASPPPGSYSNPIFRMMP 85 (282)
T ss_pred EEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeeceeeecCCChHHHHHHHhcC
Confidence 37899999999753 122332221 222233 445599999764332 23444444443
Q ss_pred HhCCCcEEEEcCCCchh
Q 029935 102 VRYRDRITILRGNHESR 118 (185)
Q Consensus 102 ~~~p~~v~~l~GNHE~~ 118 (185)
--....||||..
T Consensus 86 -----yDa~tlGNHEFd 97 (282)
T cd07407 86 -----YDLLTIGNHELY 97 (282)
T ss_pred -----CcEEeecccccC
Confidence 235778999994
No 114
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.17 Score=44.19 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=51.5
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCC--CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCC
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGN--APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNH 115 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~--~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNH 115 (185)
+.+|.++||+-|+++.|.+-++++.. .|-|.++++|++++-..++.|++++.... ...|-.++++-+|-
T Consensus 5 ~~kILv~Gd~~Gr~~eli~rI~~v~Kk~GpFd~liCvGnfF~~~~~~~e~~~ykng~-~~vPiptY~~g~~~ 75 (528)
T KOG2476|consen 5 DAKILVCGDVEGRFDELIKRIQKVNKKSGPFDLLICVGNFFGHDTQNAEVEKYKNGT-KKVPIPTYFLGDNA 75 (528)
T ss_pred CceEEEEcCccccHHHHHHHHHHHhhcCCCceEEEEecccCCCccchhHHHHHhcCC-ccCceeEEEecCCC
Confidence 46999999999999998776665543 34689999999998766777777765543 34565667776665
No 115
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=93.82 E-value=0.081 Score=48.56 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=43.6
Q ss_pred cCCCEEEEeCCCCCHH----------------HHHHHHHhcCC-CCCCeEEEeccccCCCCCcH-------------HHH
Q 029935 45 VKCPVTVCGDIHGQFH----------------DLVELFRIGGN-APDTNYLFMGDYVDRGYYSV-------------ETV 94 (185)
Q Consensus 45 ~~~~i~vigDIHG~~~----------------~l~~ll~~~~~-~~~~~lv~lGD~vdrG~~~~-------------e~l 94 (185)
..-+|+-.+|+||++. .+..+++.+.. .++..++-.||.+...|.+- .++
T Consensus 24 ~~L~IL~TnDlHg~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~llvD~GD~~qGsp~~~~~~~~~~~~g~~~p~i 103 (649)
T PRK09420 24 VDLRIMETTDLHSNMMDFDYYKDKPTEKFGLVRTASLIKAARAEAKNSVLVDNGDLIQGSPLGDYMAAKGLKAGDVHPVY 103 (649)
T ss_pred ceEEEEEEcccccCccCCccccCCcccccCHHHHHHHHHHHHHhCCCEEEEECCCcCCCchhhhhhhhccccCCCcchHH
Confidence 3558999999999864 23445555432 23445666999997655321 245
Q ss_pred HHHHHHHHhCCCcEEEEcCCCchh
Q 029935 95 TLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 95 ~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+.+..+. --....||||.-
T Consensus 104 ~amN~lg-----yDa~tlGNHEFd 122 (649)
T PRK09420 104 KAMNTLD-----YDVGNLGNHEFN 122 (649)
T ss_pred HHHHhcC-----CcEEeccchhhh
Confidence 5555554 236778999974
No 116
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=93.80 E-value=0.082 Score=48.32 Aligned_cols=66 Identities=18% Similarity=0.169 Sum_probs=41.1
Q ss_pred CEEEEeCCCCCHHH----------------HHHHHHhcCCC-CCCeEEEeccccCCCCCc-------------HHHHHHH
Q 029935 48 PVTVCGDIHGQFHD----------------LVELFRIGGNA-PDTNYLFMGDYVDRGYYS-------------VETVTLL 97 (185)
Q Consensus 48 ~i~vigDIHG~~~~----------------l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~-------------~e~l~~l 97 (185)
+|+-+.|+||++.. +..+++.+... ++..++-.||.+...|.+ ..+++.+
T Consensus 4 ~Il~TnDlH~~l~~~dy~~~~~~~~~Glar~atli~~~R~e~~n~lllD~GD~~qGsp~~~~~~~~~~~~~~~~p~~~~m 83 (626)
T TIGR01390 4 RIVETTDLHTNLMDYDYYKDKPTDKFGLTRTATLIKQARAEVKNSVLVDNGDLIQGSPLGDYMAAQGLKAGQMHPVYKAM 83 (626)
T ss_pred EEEEEcCCccCccCCcccCCCCCCCcCHHHHHHHHHHHHhhCCCeEEEECCCcCCCccchhhhhhccccCCCcChHHHHH
Confidence 68899999998642 34455544322 334555699999755432 2345555
Q ss_pred HHHHHhCCCcEEEEcCCCchh
Q 029935 98 VALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 98 ~~l~~~~p~~v~~l~GNHE~~ 118 (185)
..+. -=....||||.-
T Consensus 84 N~lg-----yDa~tlGNHEFd 99 (626)
T TIGR01390 84 NLLK-----YDVGNLGNHEFN 99 (626)
T ss_pred hhcC-----ccEEeccccccc
Confidence 5544 135778999964
No 117
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=93.37 E-value=0.034 Score=48.50 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=84.9
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceec----CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHH
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPV----KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETV 94 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~----~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l 94 (185)
-+..+.+..+++.+.+++.-+|+.... .--.+.++|.||...++.++++.- -....-+++-|++++++....+.+
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~~~A~ 92 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEFKKAL 92 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHHHHHH
Confidence 366788889999999999999875432 234789999999988877776643 112246889999999999999999
Q ss_pred HHHHHHHHhCCCcEEEEcCCCchhhhhhhhCC
Q 029935 95 TLLVALKVRYRDRITILRGNHESRQITQVYGF 126 (185)
Q Consensus 95 ~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~ 126 (185)
..+...+...|+...+.|++||.-.+-..++|
T Consensus 93 ~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~f 124 (476)
T KOG0376|consen 93 LDLEKVKKLAPNDPDATRKIDECNKIVSEEKF 124 (476)
T ss_pred HHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999766444433
No 118
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=93.29 E-value=0.22 Score=42.92 Aligned_cols=73 Identities=8% Similarity=0.021 Sum_probs=43.5
Q ss_pred cCCCEEEEeCCCC-CHHHH--HHHHH-hcCCCCCCeEEEeccccCCCCCcHH------HHHHHHHHHH-hCCCcEEEEcC
Q 029935 45 VKCPVTVCGDIHG-QFHDL--VELFR-IGGNAPDTNYLFMGDYVDRGYYSVE------TVTLLVALKV-RYRDRITILRG 113 (185)
Q Consensus 45 ~~~~i~vigDIHG-~~~~l--~~ll~-~~~~~~~~~lv~lGD~vdrG~~~~e------~l~~l~~l~~-~~p~~v~~l~G 113 (185)
-.-+.+++||-=+ ..... .+.+. .++..+.+.+|-+||-++.|..+.. ..+.+..-.. .-.-.++.++|
T Consensus 25 ~~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF~~Gv~sv~Dp~f~~~FE~vY~~~s~~L~~Pwy~vLG 104 (394)
T PTZ00422 25 AQLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNFPGGVDGLNDPKWKHCFENVYSEESGDMQIPFFTVLG 104 (394)
T ss_pred CeEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccccCCCCCccchhHHhhHhhhccCcchhhCCCeEEeCC
Confidence 3447999999643 32221 12232 2334567889999999888876543 3333332111 00125999999
Q ss_pred CCch
Q 029935 114 NHES 117 (185)
Q Consensus 114 NHE~ 117 (185)
|||.
T Consensus 105 NHDy 108 (394)
T PTZ00422 105 QADW 108 (394)
T ss_pred cccc
Confidence 9997
No 119
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=93.19 E-value=0.13 Score=44.90 Aligned_cols=73 Identities=16% Similarity=0.102 Sum_probs=41.5
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHhcCCC-CCCeEEEeccccCCCCCcHHHH----HHHHHHHHhCCCcEEEEcCCCchhh
Q 029935 45 VKCPVTVCGDIHGQFHDLVELFRIGGNA-PDTNYLFMGDYVDRGYYSVETV----TLLVALKVRYRDRITILRGNHESRQ 119 (185)
Q Consensus 45 ~~~~i~vigDIHG~~~~l~~ll~~~~~~-~~~~lv~lGD~vdrG~~~~e~l----~~l~~l~~~~p~~v~~l~GNHE~~~ 119 (185)
...+++|+||+= +...-...+...... ..|.++++||+.-.-..+.+.. +++.-+...-| ..+.-||||.-.
T Consensus 146 ~~~~~~i~GDlG-~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~~n~~wD~f~r~vEp~As~vP--ymv~~GNHE~d~ 222 (452)
T KOG1378|consen 146 SPTRAAIFGDMG-CTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGYSNWQWDEFGRQVEPIASYVP--YMVCSGNHEIDW 222 (452)
T ss_pred CceeEEEEcccc-ccccccchHhHHhcccCCcEEEEecchhhcCCCCccchHHHHhhhhhhhccCc--eEEecccccccC
Confidence 456899999983 333322233322222 3688999999874322221332 23333333333 788999999865
Q ss_pred h
Q 029935 120 I 120 (185)
Q Consensus 120 ~ 120 (185)
.
T Consensus 223 ~ 223 (452)
T KOG1378|consen 223 P 223 (452)
T ss_pred C
Confidence 5
No 120
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=93.17 E-value=0.49 Score=41.60 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=42.7
Q ss_pred CCEEEEeCCCC-CHHHH----HHHHHhcCCCC-----CCeEEEeccccCC-CC-----------CcHHHHHHHHHHHHhC
Q 029935 47 CPVTVCGDIHG-QFHDL----VELFRIGGNAP-----DTNYLFMGDYVDR-GY-----------YSVETVTLLVALKVRY 104 (185)
Q Consensus 47 ~~i~vigDIHG-~~~~l----~~ll~~~~~~~-----~~~lv~lGD~vdr-G~-----------~~~e~l~~l~~l~~~~ 104 (185)
.+++++||+|= ...-+ ...++-+.-.. ..-+++.||.||. |- +..+-.+.+.++-..-
T Consensus 226 v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VDGigiYpgq~~eL~i~di~~qy~~~A~~L~~v 305 (481)
T COG1311 226 VYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVDGIGIYPGQEEELVIADIYEQYEELAEFLDQV 305 (481)
T ss_pred eEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEecccccccccccCcccccccccchHHHHHHHHHHhhC
Confidence 35899999994 33333 33333332211 1356779999994 21 2223344444444444
Q ss_pred CC--cEEEEcCCCchhhhh
Q 029935 105 RD--RITILRGNHESRQIT 121 (185)
Q Consensus 105 p~--~v~~l~GNHE~~~~~ 121 (185)
|. .+++.+||||..-..
T Consensus 306 p~~I~v~i~PGnhDa~r~a 324 (481)
T COG1311 306 PEHIKVFIMPGNHDAVRQA 324 (481)
T ss_pred CCCceEEEecCCCCccccc
Confidence 44 578999999986443
No 121
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.17 Score=41.50 Aligned_cols=70 Identities=24% Similarity=0.266 Sum_probs=43.6
Q ss_pred cCCCEEEEeC--CCCCHHHHHHHHH--hcC-CCCCCeEEEecccc-CCCCCcH------HHHHHHH---HHHHhCCCcEE
Q 029935 45 VKCPVTVCGD--IHGQFHDLVELFR--IGG-NAPDTNYLFMGDYV-DRGYYSV------ETVTLLV---ALKVRYRDRIT 109 (185)
Q Consensus 45 ~~~~i~vigD--IHG~~~~l~~ll~--~~~-~~~~~~lv~lGD~v-drG~~~~------e~l~~l~---~l~~~~p~~v~ 109 (185)
..-+++|||| -+|.+..-+-.+. .++ ....|.++-+||-+ |.|+.+. +..+-+. +|+ .+++
T Consensus 42 gslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~Dp~Fq~sF~nIYT~pSLQ----kpWy 117 (336)
T KOG2679|consen 42 GSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSENDPRFQDSFENIYTAPSLQ----KPWY 117 (336)
T ss_pred CceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCCChhHHhhhhhcccCcccc----cchh
Confidence 3447999999 4777766444433 222 34567888899955 5665442 1222222 333 3589
Q ss_pred EEcCCCchh
Q 029935 110 ILRGNHESR 118 (185)
Q Consensus 110 ~l~GNHE~~ 118 (185)
.|.||||..
T Consensus 118 ~vlGNHDyr 126 (336)
T KOG2679|consen 118 SVLGNHDYR 126 (336)
T ss_pred hhccCcccc
Confidence 999999986
No 122
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=92.33 E-value=0.2 Score=47.11 Aligned_cols=68 Identities=19% Similarity=0.152 Sum_probs=41.9
Q ss_pred CCCEEEEeCCCCCHHH----------------HHHHHHhcCC-CCCCeEEEeccccCCCCCc--------------HHHH
Q 029935 46 KCPVTVCGDIHGQFHD----------------LVELFRIGGN-APDTNYLFMGDYVDRGYYS--------------VETV 94 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~----------------l~~ll~~~~~-~~~~~lv~lGD~vdrG~~~--------------~e~l 94 (185)
.-+|+-+.|+||++.. +..+++.+.. .++..++-.||.+..-|.. ..++
T Consensus 115 ~LtIL~TnDiHg~l~~~dy~~~~~~~~~GlaRlAtlI~~~Rae~~NtLllD~GD~iQGSpl~~~~a~~~~~~~g~~~P~i 194 (814)
T PRK11907 115 DVRILSTTDLHTNLVNYDYYQDKPSQTLGLAKTAVLIEEAKKENPNVVLVDNGDTIQGTPLGTYKAIVDPVEEGEQHPMY 194 (814)
T ss_pred EEEEEEEEeecCCcccccccccCccccccHHHHHHHHHHHHHhCCCEEEEecCCCCCCCcccchhhhccccccCcchHHH
Confidence 3478999999998542 2334444432 2334566699999754422 1356
Q ss_pred HHHHHHHHhCCCcEEEEcCCCchh
Q 029935 95 TLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 95 ~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+.+..+. --....||||.-
T Consensus 195 ~amN~LG-----yDA~tLGNHEFD 213 (814)
T PRK11907 195 AALEALG-----FDAGTLGNHEFN 213 (814)
T ss_pred HHHhccC-----CCEEEechhhcc
Confidence 6555554 235778999974
No 123
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=0.35 Score=36.15 Aligned_cols=62 Identities=27% Similarity=0.332 Sum_probs=43.5
Q ss_pred CEEEEeCCCC--CHHHHHHHHHhcCCCC-CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 48 PVTVCGDIHG--QFHDLVELFRIGGNAP-DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 48 ~i~vigDIHG--~~~~l~~ll~~~~~~~-~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
-+.++||.|= ...+|-.-++++--++ -.+++++|+++ +.|.++++..+. ++++.+||--|..
T Consensus 2 LvL~lgD~HiP~Ra~~Lp~KFkklLvPgki~hilctGNlc-----s~e~~dylk~l~----~dvhiVrGeFD~~ 66 (183)
T KOG3325|consen 2 LVLVLGDLHIPHRANDLPAKFKKLLVPGKIQHILCTGNLC-----SKESYDYLKTLS----SDVHIVRGEFDEN 66 (183)
T ss_pred EEEEeccccCCccccccCHHHHhccCCCceeEEEEeCCcc-----hHHHHHHHHhhC----CCcEEEecccCcc
Confidence 4689999994 2223333333332222 35899999985 679999999887 6899999988875
No 124
>COG0639 ApaH Diadenosine tetraphosphatase and related serine/threonine protein phosphatases [Signal transduction mechanisms]
Probab=91.93 E-value=0.052 Score=38.77 Aligned_cols=61 Identities=54% Similarity=0.965 Sum_probs=42.2
Q ss_pred hCCHHHHHHHhCCHHHHHH---HHHHhhcCCceEEEcC-cEEEEecCCCCCC-CCHHHhhccccCC
Q 029935 124 YGFYDECLRKYGNANVWKH---FTDLFDYLPLTALIES-QVFCLHGGLSPSL-DTLDNIRALDRIQ 184 (185)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~---~~~~~~~lP~~~~i~~-~~l~vHaGi~p~~-~~~~~i~~i~R~~ 184 (185)
+++..++...++....|.. ..++++.+|......+ .++|.|++++|.. ....+++.+.|..
T Consensus 7 ~~~~~~~~~~~~~~~~w~~~~g~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 72 (155)
T COG0639 7 YGFYDEKLRKYGEELEWLRAAGGLETFDSLPLAAVAEGGKLLCHHGGLSPGLDRLLDIIEVLDRLR 72 (155)
T ss_pred hchhHHhhhhcCCceeeeeccchhhHHHhhhHHHHhcCCceeeecCCCCcchhhhHHHHHHHhhhh
Confidence 3333443444433224544 8899999999887766 8889999998875 7788888877754
No 125
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=91.81 E-value=0.59 Score=38.04 Aligned_cols=72 Identities=14% Similarity=0.203 Sum_probs=39.1
Q ss_pred EEEEeCCC-CCH----HHHHHHHHhc-CC---C-------CCCeEEEeccccCCCCCc------------------HHHH
Q 029935 49 VTVCGDIH-GQF----HDLVELFRIG-GN---A-------PDTNYLFMGDYVDRGYYS------------------VETV 94 (185)
Q Consensus 49 i~vigDIH-G~~----~~l~~ll~~~-~~---~-------~~~~lv~lGD~vdrG~~~------------------~e~l 94 (185)
+++|||+| |.- .+++.+.+-+ +. . .-.++|+.||.++.-... .+.+
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARYLTKKSSAASVEAV 81 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhccccccchhhHHHH
Confidence 68999999 422 2333333321 11 1 123799999999864321 2223
Q ss_pred HHHHHHHHhCC--CcEEEEcCCCchhhh
Q 029935 95 TLLVALKVRYR--DRITILRGNHESRQI 120 (185)
Q Consensus 95 ~~l~~l~~~~p--~~v~~l~GNHE~~~~ 120 (185)
+.+..+-.+-+ -.+.+++||||-...
T Consensus 82 ~~ld~~l~~l~~~i~V~imPG~~Dp~~~ 109 (257)
T cd07387 82 KELDNFLSQLASSVPVDLMPGEFDPANH 109 (257)
T ss_pred HHHHHHHHhhhcCCeEEECCCCCCcccc
Confidence 22222221111 258899999998644
No 126
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=91.63 E-value=0.2 Score=44.98 Aligned_cols=68 Identities=21% Similarity=0.096 Sum_probs=39.0
Q ss_pred CCCEEEEeCCCCCHH----------HHHHHHHhcC-----CCCCCeEEEeccccCCCCCc-----HHHHHHHHHHHHhCC
Q 029935 46 KCPVTVCGDIHGQFH----------DLVELFRIGG-----NAPDTNYLFMGDYVDRGYYS-----VETVTLLVALKVRYR 105 (185)
Q Consensus 46 ~~~i~vigDIHG~~~----------~l~~ll~~~~-----~~~~~~lv~lGD~vdrG~~~-----~e~l~~l~~l~~~~p 105 (185)
.-.|+-++|+||.+. .+..+++... ..++..++..||.+...+.+ ..+++.+..+.
T Consensus 34 ~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~s~~~~g~~~i~~mN~~g---- 109 (551)
T PRK09558 34 KITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFRGMNLIG---- 109 (551)
T ss_pred EEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEhhhhcCCchhHHHHhcCC----
Confidence 347899999999864 2234444332 12344556699998643322 22344444443
Q ss_pred CcEEEEcCCCchh
Q 029935 106 DRITILRGNHESR 118 (185)
Q Consensus 106 ~~v~~l~GNHE~~ 118 (185)
-.+ ...||||.-
T Consensus 110 ~Da-~tlGNHEFD 121 (551)
T PRK09558 110 YDA-MAVGNHEFD 121 (551)
T ss_pred CCE-EcccccccC
Confidence 234 445999974
No 127
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=91.50 E-value=0.4 Score=43.21 Aligned_cols=66 Identities=20% Similarity=0.137 Sum_probs=39.2
Q ss_pred CEEEEeCCCCCHHH---------------------HHHHHHhcCC-CCCCeEEEeccccCCCCCc-----HHHHHHHHHH
Q 029935 48 PVTVCGDIHGQFHD---------------------LVELFRIGGN-APDTNYLFMGDYVDRGYYS-----VETVTLLVAL 100 (185)
Q Consensus 48 ~i~vigDIHG~~~~---------------------l~~ll~~~~~-~~~~~lv~lGD~vdrG~~~-----~e~l~~l~~l 100 (185)
.|+-+.|+||++.. +..++++... .++..++..||.+...+.+ ...++.+..+
T Consensus 2 tILhtND~Hg~l~~~~~~~~~~~~~~~~~~gG~a~l~~~i~~~r~~~~n~l~ldaGD~~~gs~~~~~~~g~~~i~~~N~~ 81 (550)
T TIGR01530 2 SIIHINDHHSHLEPEELEIALAGEQLKAAIGGFAALNAEINKLRAESKNALVLHAGDAIIGTLYFTLFGGRADAALMNAA 81 (550)
T ss_pred EEEEEccccccccCcccccccCCCccccccCCHHHHHHHHHHHHhhCCCeEEEECCCCCCCccchhhcCCHHHHHHHhcc
Confidence 46778888887533 3444554432 3444666699998755432 2334444443
Q ss_pred HHhCCCcEEEEcCCCchh
Q 029935 101 KVRYRDRITILRGNHESR 118 (185)
Q Consensus 101 ~~~~p~~v~~l~GNHE~~ 118 (185)
. --....||||.-
T Consensus 82 g-----~Da~~lGNHEFd 94 (550)
T TIGR01530 82 G-----FDFFTLGNHEFD 94 (550)
T ss_pred C-----CCEEEecccccc
Confidence 3 246788999974
No 128
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=91.41 E-value=0.93 Score=37.50 Aligned_cols=74 Identities=14% Similarity=0.280 Sum_probs=48.6
Q ss_pred CCCEEEEeCCCC----CHHHHHHHHHhcC-CCC----CCeEEEeccccCCC----CCc----HHHHHHHHHH-HHhCC--
Q 029935 46 KCPVTVCGDIHG----QFHDLVELFRIGG-NAP----DTNYLFMGDYVDRG----YYS----VETVTLLVAL-KVRYR-- 105 (185)
Q Consensus 46 ~~~i~vigDIHG----~~~~l~~ll~~~~-~~~----~~~lv~lGD~vdrG----~~~----~e~l~~l~~l-~~~~p-- 105 (185)
..+++|+||+|= ..++|.++++... ..+ ...+|+.|+++.+. ..+ .+-.+.+..+ ..++|
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~~~~~~~yk~~Fd~La~llls~fp~L 106 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYNRNFHKVYIKGFEKLSVMLISKFKLI 106 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCCCCchHHHHHHHHHHHHHHHHhChHH
Confidence 457999999994 5666777777663 212 45799999998762 222 2344445442 33444
Q ss_pred ---CcEEEEcCCCchhh
Q 029935 106 ---DRITILRGNHESRQ 119 (185)
Q Consensus 106 ---~~v~~l~GNHE~~~ 119 (185)
.++++|+|-.|-+.
T Consensus 107 ~~~s~fVFVPGpnDPw~ 123 (291)
T PTZ00235 107 LEHCYLIFIPGINDPCA 123 (291)
T ss_pred HhcCeEEEECCCCCCCc
Confidence 48999999999754
No 129
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=90.95 E-value=0.43 Score=39.16 Aligned_cols=67 Identities=18% Similarity=0.203 Sum_probs=43.3
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCC-cEEEEcCCCchhhh
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRD-RITILRGNHESRQI 120 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~-~v~~l~GNHE~~~~ 120 (185)
..|.+.|||-|+-..... .-++.|.++.+||...-| .+.|+..+=..+. ..|. .=+.|.||||..+-
T Consensus 61 ~~r~VcisdtH~~~~~i~------~~p~gDvlihagdfT~~g-~~~ev~~fn~~~g-slph~yKIVIaGNHELtFd 128 (305)
T KOG3947|consen 61 YARFVCISDTHELTFDIN------DIPDGDVLIHAGDFTNLG-LPEEVIKFNEWLG-SLPHEYKIVIAGNHELTFD 128 (305)
T ss_pred ceEEEEecCcccccCccc------cCCCCceEEeccCCcccc-CHHHHHhhhHHhc-cCcceeeEEEeeccceeec
Confidence 568999999997654432 234567789999997654 3445555444332 2222 34789999998643
No 130
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=89.87 E-value=0.45 Score=44.62 Aligned_cols=68 Identities=21% Similarity=0.175 Sum_probs=40.8
Q ss_pred CCCEEEEeCCCCCHHH----------------HHHHHHhcCC-CCCCeEEEeccccCCCCCc------------------
Q 029935 46 KCPVTVCGDIHGQFHD----------------LVELFRIGGN-APDTNYLFMGDYVDRGYYS------------------ 90 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~----------------l~~ll~~~~~-~~~~~lv~lGD~vdrG~~~------------------ 90 (185)
.-+|+-++|+||++.. +..+++++.. .++..++-.||.+..-|.+
T Consensus 39 ~L~IL~TnDiHg~l~~~dy~~~~~~~~~Glar~AtlI~~~R~e~~ntlllD~GD~iqGspl~~~~~~~~~~~~~~~~~~~ 118 (780)
T PRK09418 39 NLRILETSDIHVNLMNYDYYQTKTDNKVGLVQTATLVNKAREEAKNSVLFDDGDALQGTPLGDYVANKINDPKKPVDPSY 118 (780)
T ss_pred EEEEEEEeecCCCCcCcCccccCCcCCCCHHHHHHHHHHHHHhCCCeEEEECCCCCCCchHHHHHhhccccccccccccc
Confidence 3479999999998632 3334444432 2344566699988543321
Q ss_pred -HHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 91 -VETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 91 -~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
..+++.+..+. -=....||||.-
T Consensus 119 ~~p~i~~mN~lg-----yDa~tlGNHEFd 142 (780)
T PRK09418 119 THPLYRLMNLMK-----YDVISLGNHEFN 142 (780)
T ss_pred chHHHHHHhccC-----CCEEeccccccc
Confidence 23555555544 135778999964
No 131
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=85.21 E-value=16 Score=28.47 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=57.4
Q ss_pred CeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhhhhhCCH----------------HHHHHHhCCHH
Q 029935 75 TNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFY----------------DECLRKYGNAN 138 (185)
Q Consensus 75 ~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~~~~~~~----------------~~~~~~~~~~~ 138 (185)
..+|++| .|.+..|.++++..++..+-.+ .++.|+-|.+-.++...|. +|...+| -..
T Consensus 40 ~~lVvlG----SGGHT~EMlrLl~~l~~~y~~r-~yI~a~tD~mS~~k~~~F~~~~a~~~a~~~~ipRsReVgQS~-ltS 113 (211)
T KOG3339|consen 40 STLVVLG----SGGHTGEMLRLLEALQDLYSPR-SYIAADTDEMSEQKARSFELSLAHCKAKNYEIPRSREVGQSW-LTS 113 (211)
T ss_pred eEEEEEc----CCCcHHHHHHHHHHHHhhcCce-EEEEecCchhhHHHHHhhhccccccchhheecchhhhhhhhh-hhh
Confidence 4688887 5889999999999998887554 4558999999776544332 1112222 134
Q ss_pred HHHHHHHHhhcCCceEEEcCcEEEEec
Q 029935 139 VWKHFTDLFDYLPLTALIESQVFCLHG 165 (185)
Q Consensus 139 ~~~~~~~~~~~lP~~~~i~~~~l~vHa 165 (185)
.|..+...+.++++...+--.++.+-|
T Consensus 114 v~Tti~all~s~~lv~RirPdlil~NG 140 (211)
T KOG3339|consen 114 VFTTIWALLQSFVLVWRIRPDLILCNG 140 (211)
T ss_pred HHHHHHHHHHHheEEEecCCCEEEECC
Confidence 555666777777877776556666666
No 132
>PF06874 FBPase_2: Firmicute fructose-1,6-bisphosphatase; InterPro: IPR009164 Fructose 1,6-bisphosphatase catalyses the hydrolysis of fructose 1,6-bisphosphate to fructose 6-phosphate []. This is an essential reaction in the process of gluconeogenesis, the process by which non-carbohydrate precursors are converted to glucose, and hence this enzyme is found almost universally. Enzyme activity can be regulated by a number of different mechanisms including AMP inhibition, cylic AMP-dependent phosphorylation and light-dependent-activation. This entry represents a group of fructose 1,6-bisphosphatases found within the Firmicutes (low GC Gram-positive bacteria) which do not show any significant sequence similarity to the enzymes from other organisms. The Bacillus subtilis enzyme is inhibited by AMP, though this can be overcome by phosphoenolpyruvate, and is dependent on Mn(2+) [, ]. Mutants lacking this enzyme are apparently still able to grow on gluconeogenic growth substrates such as malate and glycerol.; GO: 0042132 fructose 1,6-bisphosphate 1-phosphatase activity, 0006094 gluconeogenesis
Probab=83.19 E-value=1.3 Score=40.35 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcC
Q 029935 33 RAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGG 70 (185)
Q Consensus 33 ~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~ 70 (185)
.++..=+..+.-+++.-.++|||||.+++|..+|+...
T Consensus 19 tEIINL~AIlnLPKGTEhF~SDlHGEyeAF~HiLrn~S 56 (640)
T PF06874_consen 19 TEIINLEAILNLPKGTEHFMSDLHGEYEAFDHILRNGS 56 (640)
T ss_pred HHHHHHHHHhcCCCCceEeeeccccchHHHHHHHHcCc
Confidence 33333344444456778999999999999999997543
No 133
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=75.96 E-value=11 Score=25.00 Aligned_cols=68 Identities=15% Similarity=0.069 Sum_probs=45.2
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCC--CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGN--APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGN 114 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~--~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GN 114 (185)
..+.+|=|---|.+++.++++.+.. .....++++|+.-|.|..+.+....+.++...+...+++...|
T Consensus 12 ~~~~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~ 81 (91)
T PF02875_consen 12 NGPTVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDN 81 (91)
T ss_dssp TTEEEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSB
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 3567888866688899888876643 3445677799999988888877777777666555554444443
No 134
>PF13258 DUF4049: Domain of unknown function (DUF4049)
Probab=75.15 E-value=5.7 Score=32.08 Aligned_cols=90 Identities=23% Similarity=0.267 Sum_probs=45.8
Q ss_pred CeEEEeccccC-CC---CCcHHHHHHHHHHHHh-------CCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHH
Q 029935 75 TNYLFMGDYVD-RG---YYSVETVTLLVALKVR-------YRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHF 143 (185)
Q Consensus 75 ~~lv~lGD~vd-rG---~~~~e~l~~l~~l~~~-------~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (185)
.-.+||||-.+ |- ....-++.++.+.+.. -.++|+++-||||..+-.. +........ .....-
T Consensus 86 tpciflgdhtgdrfsti~gd~yiltllnsm~nme~nkdsrinknvvvlagnhein~ngn----y~arlanhk--ls~gDT 159 (318)
T PF13258_consen 86 TPCIFLGDHTGDRFSTIFGDQYILTLLNSMRNMEGNKDSRINKNVVVLAGNHEINFNGN----YMARLANHK--LSAGDT 159 (318)
T ss_pred ccceeecCcccchhhhhcchHHHHHHHHHHHhcccccccccccceEEEecCceeccCch----HHHHHhhCC--CCccch
Confidence 45788888663 31 1223456666665542 2358999999999854311 111111100 000112
Q ss_pred HHHhhcCCceEEE-cCcEEEEecCCCCC
Q 029935 144 TDLFDYLPLTALI-ESQVFCLHGGLSPS 170 (185)
Q Consensus 144 ~~~~~~lP~~~~i-~~~~l~vHaGi~p~ 170 (185)
...+..+|..... ..+++..|-||.-+
T Consensus 160 YnlIKtldVC~YD~erkvltsHHGIird 187 (318)
T PF13258_consen 160 YNLIKTLDVCNYDPERKVLTSHHGIIRD 187 (318)
T ss_pred hhccccccccccCcchhhhhcccCceec
Confidence 3445666654432 23577777777443
No 135
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.70 E-value=29 Score=25.01 Aligned_cols=61 Identities=16% Similarity=0.166 Sum_probs=41.1
Q ss_pred CHHHHHHHHHhcCCCCCCeEEEeccccCCCCCc-----HHHHHHHHHHHHhCCCcEEEE---cCCCchh
Q 029935 58 QFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYS-----VETVTLLVALKVRYRDRITIL---RGNHESR 118 (185)
Q Consensus 58 ~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~-----~e~l~~l~~l~~~~p~~v~~l---~GNHE~~ 118 (185)
-+++|+..++..+....-.++|+|+-.|++.+| ....-.+.+--..+|..+++| -||-+.|
T Consensus 11 g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~W 79 (128)
T KOG3425|consen 11 GYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYW 79 (128)
T ss_pred hHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcc
Confidence 367888899888766667788999999886544 444444443333567766554 5888776
No 136
>PRK10773 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed
Probab=68.41 E-value=35 Score=29.85 Aligned_cols=67 Identities=10% Similarity=0.020 Sum_probs=48.5
Q ss_pred CCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcC
Q 029935 47 CPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRG 113 (185)
Q Consensus 47 ~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~G 113 (185)
..+.+|=|-+. +.+++.++++.+...+..+++++||+..-|+.+.+.-.-+.+.-...+-..++.-|
T Consensus 325 ~g~~iIDDsYn~nP~s~~aaL~~l~~~~~r~i~VlG~m~elG~~~~~~h~~~~~~~~~~~~d~v~~~G 392 (453)
T PRK10773 325 EGQLLLDDSYNANVGSMTAAAQVLAEMPGYRVMVVGDMAELGAESEACHRQVGEAAKAAGIDKVLSVG 392 (453)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEECChhhcchHHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 45788989655 68889998887765445678899999999999988877776654443323444446
No 137
>COG0770 MurF UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=65.89 E-value=52 Score=29.07 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeC-CCCCHHHHHHHHHhcCCCCCCe-EEEeccccCCCCCcHHHHHHH
Q 029935 20 LPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGD-IHGQFHDLVELFRIGGNAPDTN-YLFMGDYVDRGYYSVETVTLL 97 (185)
Q Consensus 20 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigD-IHG~~~~l~~ll~~~~~~~~~~-lv~lGD~vdrG~~~~e~l~~l 97 (185)
++.+++..-+....-+--+-. .......+.+|-| .-+|.+.+.+.++.+...+... ++.+||+.-=|..+.++=+.+
T Consensus 300 ~~~e~i~~~L~~~~~~~gR~~-~~~~~~g~~iIdD~YNAnp~sm~aai~~l~~~~~~~~i~VlGdM~ELG~~s~~~H~~v 378 (451)
T COG0770 300 LDLEEIAAGLKELKPVKGRLE-VILLANGKTLIDDSYNANPDSMRAALDLLAALPGRKGIAVLGDMLELGEESEELHEEV 378 (451)
T ss_pred CCHHHHHHHHHhcCCCCccce-eEecCCCcEEEEcCCCCCHHHHHHHHHHHhhCccCCcEEEeCChhhhCccHHHHHHHH
Confidence 556665544443222211111 1233445677888 6789999999888777666555 899999999999998887777
Q ss_pred HHHHHhCCCcEEEEcCC
Q 029935 98 VALKVRYRDRITILRGN 114 (185)
Q Consensus 98 ~~l~~~~p~~v~~l~GN 114 (185)
-+......-..+++-|.
T Consensus 379 ~~~~~~~~~d~v~~~G~ 395 (451)
T COG0770 379 GEYAVEAGIDLVFLVGE 395 (451)
T ss_pred HHHHHhcCceEEEEEcc
Confidence 76655443457788888
No 138
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=64.63 E-value=29 Score=28.27 Aligned_cols=67 Identities=16% Similarity=0.120 Sum_probs=42.2
Q ss_pred CCEEEEeCCCCCHH--HHHHHHHhcCC-CCCCeEEEeccccCCCCC-cHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 47 CPVTVCGDIHGQFH--DLVELFRIGGN-APDTNYLFMGDYVDRGYY-SVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 47 ~~i~vigDIHG~~~--~l~~ll~~~~~-~~~~~lv~lGD~vdrG~~-~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
||+.+||||-|... .+..-|..+.. ...|.+|..|.-...|.. ..+....+.+.. - =++-+|||=..
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~G~Git~k~y~~l~~~G----~-dviT~GNH~wd 71 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAGGFGITEKIYKELLEAG----A-DVITLGNHTWD 71 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccCCcCCCHHHHHHHHHhC----C-CEEeccccccc
Confidence 68999999999644 34444544432 234778888887766654 344555554443 2 35678999653
No 139
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=63.89 E-value=28 Score=22.91 Aligned_cols=63 Identities=14% Similarity=0.101 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC---CHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcH
Q 029935 21 PEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG---QFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSV 91 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG---~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~ 91 (185)
+++.+..+++..++... ....++|+|++.- .-..+...+..+...-.+.+++.||. .|..++.
T Consensus 23 Np~s~~a~l~~l~~~~~-------~~~~i~V~G~~~d~g~~~~~~~~~~~~~~~~~~d~vi~~~~~-~r~~~~~ 88 (91)
T PF02875_consen 23 NPDSIRALLEALKELYP-------KGRIIAVFGAMGDLGSKDKDFHEEIGELAAQLADVVILTGDN-PRAEDPE 88 (91)
T ss_dssp SHHHHHHHHHHHHHHCT-------TSEEEEEEEEBTT-HTSHHHCHHHHHHHHTTCSSEEEEETSB-TTTS-HH
T ss_pred CHHHHHHHHHHHHHhcc-------CCcEEEEEccccccccccHHHHHHHHHHHHhcCCEEEEcCCC-CCCCccc
Confidence 35666666666655543 3335789998654 33333333333222334668888987 4544443
No 140
>PF12085 DUF3562: Protein of unknown function (DUF3562); InterPro: IPR021945 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 62 to 84 amino acids in length. This protein has two completely conserved residues (A and Y) that may be functionally important.
Probab=63.06 E-value=16 Score=23.38 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=36.4
Q ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcce
Q 029935 2 PSQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQ 43 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 43 (185)
|++++.++.++++-....+|++++..++++...-|..+..+.
T Consensus 1 M~~~~~~e~i~~iA~~t~~P~e~V~~my~dt~~~l~~~ARV~ 42 (66)
T PF12085_consen 1 MAQDNVDEVIRSIAEETGTPAETVRRMYDDTMRELSSGARVH 42 (66)
T ss_pred CCcccHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcCCchh
Confidence 467888999999999999999999999999998888877653
No 141
>COG3207 DIT1 Pyoverdine/dityrosine biosynthesis protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.69 E-value=13 Score=30.53 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=32.6
Q ss_pred cceecCCCEEEEeCCCC-------------CH-HHHHHHHHhcCCCCCCeEEEeccc
Q 029935 41 NVQPVKCPVTVCGDIHG-------------QF-HDLVELFRIGGNAPDTNYLFMGDY 83 (185)
Q Consensus 41 ~~~~~~~~i~vigDIHG-------------~~-~~l~~ll~~~~~~~~~~lv~lGD~ 83 (185)
.++++.++++|+||=|= .| ++|..+.+.++-+..+.++++||.
T Consensus 100 ~~Y~PG~ki~I~SDghvFsD~I~Vdddh~s~Y~d~Lr~m~~~i~~~~i~kI~n~e~~ 156 (330)
T COG3207 100 LFYAPGAKITICSDGHVFSDLIRVDDDHISAYQDALRLMIEEIGATHIGKIFNLEDV 156 (330)
T ss_pred HhcCCCCEEEEEeCCceehhhccccchhHHHHHHHHHHHHHHcCCCCccceeecchh
Confidence 46678889999999872 22 346667788888888899999985
No 142
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=60.93 E-value=45 Score=25.00 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=38.7
Q ss_pred EEEeCCCCCHHHHHHHHH-hcCC------------CCCCeEEEeccccCCCCCcHHHHHHHHHHH
Q 029935 50 TVCGDIHGQFHDLVELFR-IGGN------------APDTNYLFMGDYVDRGYYSVETVTLLVALK 101 (185)
Q Consensus 50 ~vigDIHG~~~~l~~ll~-~~~~------------~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~ 101 (185)
++.+=.+||-..+...+. .++. ...-.+||+|=.+|+|.-+.++.+++..++
T Consensus 2 IvYsS~TGNTkkvA~aI~~~l~~~~~~~~~~~~~~~~~yD~i~lG~w~d~G~~d~~~~~fl~~l~ 66 (160)
T PF12641_consen 2 IVYSSRTGNTKKVAEAIAEALGAKDIVSVEEPPEDLEDYDLIFLGFWIDKGTPDKDMKEFLKKLK 66 (160)
T ss_pred EEEECCCChHHHHHHHHHHHCCCceeEeccccccCCCCCCEEEEEcCccCCCCCHHHHHHHHHcc
Confidence 456667888887765543 2221 123479999999999999999999999876
No 143
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.51 E-value=20 Score=30.33 Aligned_cols=54 Identities=30% Similarity=0.425 Sum_probs=33.7
Q ss_pred CcceecCCCEEEEeCCC-CCHHHHHHHHHhcCCCCCCeEEE-eccccC--CCCCcHHHHHHHHHHH
Q 029935 40 WNVQPVKCPVTVCGDIH-GQFHDLVELFRIGGNAPDTNYLF-MGDYVD--RGYYSVETVTLLVALK 101 (185)
Q Consensus 40 ~~~~~~~~~i~vigDIH-G~~~~l~~ll~~~~~~~~~~lv~-lGD~vd--rG~~~~e~l~~l~~l~ 101 (185)
|-.++....++++||.| ||+.++.. .+.-++| .-|+=. -|+....++.+..+|.
T Consensus 50 p~~lp~~p~tw~cGD~HLgN~ga~~~--------~~G~V~f~i~DFDe~~~g~~~~DlvRl~~Sl~ 107 (410)
T COG4320 50 PWSLPKTPFTWLCGDAHLGNFGAARN--------SKGNVVFKIADFDEGHLGQYIWDLVRLAVSLV 107 (410)
T ss_pred ccccCCCCceEEecccccccchhhcc--------CCCceEEEecccchhhccchHHHHHHHHHHHH
Confidence 33556677899999999 88887652 1223344 555421 2566666666666654
No 144
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=59.39 E-value=30 Score=31.50 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=38.7
Q ss_pred HHHHHHHhcCCCC--CCeEEEeccccC--CCCCcHH----HHHHHHHH-HHhCCC-cEEEEcCCCchhhhh
Q 029935 61 DLVELFRIGGNAP--DTNYLFMGDYVD--RGYYSVE----TVTLLVAL-KVRYRD-RITILRGNHESRQIT 121 (185)
Q Consensus 61 ~l~~ll~~~~~~~--~~~lv~lGD~vd--rG~~~~e----~l~~l~~l-~~~~p~-~v~~l~GNHE~~~~~ 121 (185)
.+..+|+.++... .|-++..||.+. +++...+ ++..+.++ ..-+|+ .++...||||-.-.+
T Consensus 196 lies~L~~ike~~~~iD~I~wTGD~~~H~~w~~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~~P~N 266 (577)
T KOG3770|consen 196 LIESALDHIKENHKDIDYIIWTGDNVAHDVWAQTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEIHPVN 266 (577)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCCCcccchhhhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCCCcHh
Confidence 3556676655433 578888999984 5665543 33333332 334665 688999999997654
No 145
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=58.65 E-value=4.4 Score=35.80 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=22.7
Q ss_pred CcceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 40 WNVQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 40 ~~~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
..+.-+.+.=-++||+||.|++|..+|+..
T Consensus 31 AIlnLPKgTEHF~SDvHGEYeaF~hVLrNg 60 (648)
T COG3855 31 AILNLPKGTEHFMSDVHGEYEAFNHVLRNG 60 (648)
T ss_pred HHhcCCcchhhhhhhhhchHHHHHHHHHcC
Confidence 333334556678999999999999999854
No 146
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=57.10 E-value=15 Score=29.82 Aligned_cols=40 Identities=30% Similarity=0.363 Sum_probs=26.6
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 76 NYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 76 ~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+++|+||++++.- -..+...|.+++.+++..+++. |=|..
T Consensus 1 ~ilfigdi~g~~G-~~~~~~~l~~lk~~~~~D~vi~--NgEn~ 40 (255)
T cd07382 1 KILFIGDIVGKPG-RKAVKEHLPKLKKEYKIDFVIA--NGENA 40 (255)
T ss_pred CEEEEEeCCCHHH-HHHHHHHHHHHHHHCCCCEEEE--CCccc
Confidence 4789999997632 2345666778888876555554 55553
No 147
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=55.75 E-value=11 Score=30.79 Aligned_cols=39 Identities=28% Similarity=0.497 Sum_probs=25.4
Q ss_pred eEEEeccccCCCCCcHH-HHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 76 NYLFMGDYVDRGYYSVE-TVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 76 ~lv~lGD~vdrG~~~~e-~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
+++|+||++.+ ...+ +-+.|.+++.+++..+++ .|=|..
T Consensus 2 ~ilfiGDi~G~--~Gr~~l~~~L~~lk~~~~~D~vI--aNgEn~ 41 (266)
T TIGR00282 2 KFLFIGDVYGK--AGRKIVKNNLPQLKSKYQADLVI--ANGENT 41 (266)
T ss_pred eEEEEEecCCH--HHHHHHHHHHHHHHHhCCCCEEE--EcCccc
Confidence 58999999954 3333 335577788877655444 466664
No 148
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=55.40 E-value=83 Score=23.26 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=49.9
Q ss_pred CCCEEEEeCCCCC-HHHHHHHHHhcCCCCCCeEEEecc--c--cCCCCCcHHHHHHHHHHHHhCC-CcEEEEcCCCchh
Q 029935 46 KCPVTVCGDIHGQ-FHDLVELFRIGGNAPDTNYLFMGD--Y--VDRGYYSVETVTLLVALKVRYR-DRITILRGNHESR 118 (185)
Q Consensus 46 ~~~i~vigDIHG~-~~~l~~ll~~~~~~~~~~lv~lGD--~--vdrG~~~~e~l~~l~~l~~~~p-~~v~~l~GNHE~~ 118 (185)
..++++|||--|- -.++.+.++..+ ..+||.-- + ...|...+|.-..++.+..+|+ .++++|.|.-|.-
T Consensus 5 gkKviiiGdRDGiPgpAie~c~~~~g----aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~aeaE 79 (150)
T PF04723_consen 5 GKKVIIIGDRDGIPGPAIEECVKTAG----AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAEAE 79 (150)
T ss_pred CcEEEEEecCCCCCcHHHHHHHHhcC----ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCChh
Confidence 4689999999884 455777887664 23444211 1 2468888898889998888765 4899999998864
No 149
>COG3365 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.20 E-value=29 Score=24.43 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=31.9
Q ss_pred CCChhHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhhccc
Q 029935 1 MPSQADLDRQIEHLMQCK------PLPEQEVNILCEQARAILVEE 39 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~l~~~ 39 (185)
|+||++++=++++...+. .++++|-.+|++..-.-...+
T Consensus 17 msSmEkvr~Iid~vr~G~IlVLE~gL~P~eeaklIe~TM~eId~e 61 (118)
T COG3365 17 MSSMEKVRYIIDKVREGDILVLEGGLTPEEEAKLIEMTMSEIDPE 61 (118)
T ss_pred cchHHHHHHHHHhccCCcEEEEeCCCChHHHHHHHHHHHHhcCcc
Confidence 889999999999999885 688888889988776655443
No 150
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=53.44 E-value=25 Score=28.62 Aligned_cols=38 Identities=29% Similarity=0.428 Sum_probs=26.1
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCC
Q 029935 76 NYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGN 114 (185)
Q Consensus 76 ~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GN 114 (185)
+++|+||++++ +.-..+-+.|-.++.++.-.++.+-|+
T Consensus 2 riLfiGDvvGk-~Gr~~v~~~Lp~lk~kyk~dfvI~N~E 39 (266)
T COG1692 2 RILFIGDVVGK-PGRKAVKEHLPQLKSKYKIDFVIVNGE 39 (266)
T ss_pred eEEEEecccCc-chHHHHHHHhHHHHHhhcCcEEEEcCc
Confidence 68999999965 223345566778888876566666443
No 151
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=52.88 E-value=65 Score=24.41 Aligned_cols=74 Identities=9% Similarity=0.059 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCC---------CC---HHHHHHHH
Q 029935 4 QADLDRQIEHLMQCK-----PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIH---------GQ---FHDLVELF 66 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIH---------G~---~~~l~~ll 66 (185)
++.+..|++.++++- ....+|++.++-+..+.+. .+++..|+-- .. ..++-.++
T Consensus 25 p~v~ammIkkAkrPLlivGp~~~dee~~E~~vKi~ekfn---------ipivaTa~~~~~~~~~~i~~~~~~lh~it~~l 95 (170)
T COG1880 25 PEVVAMMIKKAKRPLLIVGPLALDEELLELAVKIIEKFN---------IPIVATASSMGNLIGRGIGSEYINLHAITQYL 95 (170)
T ss_pred cHHHHHHHHhcCCceEEecccccCHHHHHHHHHHHHhcC---------CceEecchhhcchhhcccccchhHHHHHHHHh
Confidence 466788888888873 2333444444444333321 2333333332 33 33444455
Q ss_pred HhcCCC------CCCeEEEeccccCC
Q 029935 67 RIGGNA------PDTNYLFMGDYVDR 86 (185)
Q Consensus 67 ~~~~~~------~~~~lv~lGD~vdr 86 (185)
.+..+. ..|.+||+|=.-+.
T Consensus 96 ~Dp~w~G~dg~g~yDlviflG~~~yy 121 (170)
T COG1880 96 TDPNWPGFDGNGNYDLVIFLGSIYYY 121 (170)
T ss_pred cCCCCCCcCCCCCcceEEEEeccHHH
Confidence 554433 35799999976543
No 152
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=51.24 E-value=54 Score=22.75 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=40.4
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCC-----------------CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEE
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNAP-----------------DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITI 110 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~~-----------------~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~ 110 (185)
||+||.|=-.....|..+|+-++... ...+|.+|+.- .....+..+...+|.--++
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~-------~~~~~l~~l~~~~~~~Pvl 73 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDWSQADWSSPWEACAVILGSCS-------KLAELLKELLKWAPHIPVL 73 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHHHHhhhhcCCcEEEEEecCch-------hHHHHHHHHHhhCCCCCEE
Confidence 45666665555556666666554321 12345566653 5566667777777777788
Q ss_pred EcCCCchh
Q 029935 111 LRGNHESR 118 (185)
Q Consensus 111 l~GNHE~~ 118 (185)
+.|+++..
T Consensus 74 llg~~~~~ 81 (109)
T PF06490_consen 74 LLGEHDSP 81 (109)
T ss_pred EECCCCcc
Confidence 88998886
No 153
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=50.46 E-value=1.2e+02 Score=25.99 Aligned_cols=70 Identities=17% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCEEEEeCCC-CCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 47 CPVTVCGDIH-GQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 47 ~~i~vigDIH-G~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
..+.+|=|-+ .+.+++.++++.+...+...++++|++..-|..+.+.-..+.+......-..+++-|...
T Consensus 296 ~~~~vidDsya~np~s~~~al~~l~~~~~r~i~VlG~~~e~G~~~~~~~~~l~~~~~~~~~d~vi~~g~~~ 366 (417)
T TIGR01143 296 NGLTLIDDTYNANPDSMRAALDALARFPGKKILVLGDMAELGEYSEELHAEVGRYANSLGIDLVFLVGEEA 366 (417)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHhCCCCEEEEEcCchhcChHHHHHHHHHHHHHHHcCCCEEEEECHHH
Confidence 4577888855 489999999887764444578889999877888776665555544343323455556443
No 154
>PF09846 DUF2073: Uncharacterized protein conserved in archaea (DUF2073); InterPro: IPR012017 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.44 E-value=27 Score=24.33 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=31.7
Q ss_pred CCChhHHHHHHHHHHcCC------CCCHHHHHHHHHHHHHhhc
Q 029935 1 MPSQADLDRQIEHLMQCK------PLPEQEVNILCEQARAILV 37 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~l~ 37 (185)
|+||++++=+++.++.+. -++++|-.+|++.+-....
T Consensus 4 mssmEKir~ILd~Vk~G~IvVLE~GLtPeEe~~LIE~TM~eI~ 46 (104)
T PF09846_consen 4 MSSMEKIRLILDKVKDGNIVVLEEGLTPEEESKLIEMTMTEID 46 (104)
T ss_pred cchHHHHHHHHhhcccCcEEEEcCCCChHHHHHHHHHHHHhcC
Confidence 899999999999999995 5888888889988776665
No 155
>TIGR00550 nadA quinolinate synthetase complex, A subunit. This protein, termed NadA, plays a role in the synthesis of pyridine, a precursor to NAD. The quinolinate synthetase complex consists of A protein (this protein) and B protein. B protein converts L-aspartate to iminoaspartate, an unstable reaction product which in the absence of A protein is spontaneously hydrolyzed to form oxaloacetate. The A protein, NadA, converts iminoaspartate to quinolate.
Probab=48.76 E-value=32 Score=28.82 Aligned_cols=60 Identities=12% Similarity=0.060 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhhcccCcceec--CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEecccc
Q 029935 21 PEQEVNILCEQARAILVEEWNVQPV--KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYV 84 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~~~~~--~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~v 84 (185)
+.+|+..-+.+.++.. +-..+-.. ...|..++|+=|+-..+.+..+.. +.+.+||+||..
T Consensus 2 ~~~~~~~~I~~lk~e~-~~~ivah~y~~~Evk~~aD~~gdS~~l~~~a~~~---~~~~IvF~gv~f 63 (310)
T TIGR00550 2 SRDNLVEAILRLKKEL-NAVILAHYYQKDEIQQIADYTGDSLELAQIAAKT---DADIIVFCGVHF 63 (310)
T ss_pred ChHHHHHHHHHHHHHc-CCEEEEEcCCCHHHHHhhcceeeHHHHHHHHHhC---CCCEEEEeCCch
Confidence 3444444444444444 22223233 334778888888877777766654 567899999975
No 156
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=48.48 E-value=75 Score=26.18 Aligned_cols=57 Identities=7% Similarity=0.085 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEEe
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLFM 80 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~l 80 (185)
..+.-+++..+++.+.. .| ..-..||++|-|.|. +..+..++++.++.+|...++++
T Consensus 71 ~~i~v~~ir~~~~~~~~----~p--~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il 128 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNK----KP--YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIIL 128 (313)
T ss_pred CCCCHHHHHHHHHHHhc----Cc--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEE
Confidence 34556777777765432 22 224679999999887 55567788888888776655553
No 157
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=48.09 E-value=1.3e+02 Score=24.08 Aligned_cols=81 Identities=17% Similarity=0.113 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhhcccCc---ce-e------------cCCCEEEEeCC--CCCHHHH
Q 029935 2 PSQADLDRQIEHLMQC-KPLPEQEVNILCEQARAILVEEWN---VQ-P------------VKCPVTVCGDI--HGQFHDL 62 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~---~~-~------------~~~~i~vigDI--HG~~~~l 62 (185)
||.+|-.++.+++-+. ..++++|+..=+-.|.+.+.++.- ++ . .+...+|||+. |=+|+.|
T Consensus 48 ttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidTs~pn~VViglape~F~y~~l 127 (262)
T KOG3040|consen 48 TTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDTSDPNCVVIGLAPEGFSYQRL 127 (262)
T ss_pred CcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccCCCCCeEEEecCcccccHHHH
Confidence 4667777888887765 478999999999999988877532 11 1 13457788885 4577777
Q ss_pred HHHHHhcCCCCCCeEEEecc
Q 029935 63 VELFRIGGNAPDTNYLFMGD 82 (185)
Q Consensus 63 ~~ll~~~~~~~~~~lv~lGD 82 (185)
...++.+-..++..+|-+|-
T Consensus 128 n~AFrvL~e~~k~~LIai~k 147 (262)
T KOG3040|consen 128 NRAFRVLLEMKKPLLIAIGK 147 (262)
T ss_pred HHHHHHHHcCCCCeEEEecC
Confidence 77777665555555555443
No 158
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=47.45 E-value=1.3e+02 Score=23.17 Aligned_cols=77 Identities=19% Similarity=0.271 Sum_probs=56.0
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCC-------------------------
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNA------------------------- 72 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~------------------------- 72 (185)
..++++++..-+.+..+...+.-.- ...+++|=++|++--+-.+++.+..+
T Consensus 10 vLisee~I~~ri~ela~~I~~~y~g----~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~k 85 (178)
T COG0634 10 VLISEEQIKARIKELAAQITEDYGG----KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILK 85 (178)
T ss_pred EeeCHHHHHHHHHHHHHHHHHhhCC----CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEec
Confidence 4688999998887777776654332 56789999999998877777655421
Q ss_pred ------CCCeEEEeccccCCCCCcHHHHHHHH
Q 029935 73 ------PDTNYLFMGDYVDRGYYSVETVTLLV 98 (185)
Q Consensus 73 ------~~~~lv~lGD~vdrG~~~~e~l~~l~ 98 (185)
....++++=|++|.|-.-..+.+++.
T Consensus 86 Dld~di~grdVLiVeDIiDsG~TLs~i~~~l~ 117 (178)
T COG0634 86 DLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLK 117 (178)
T ss_pred ccccCCCCCeEEEEecccccChhHHHHHHHHH
Confidence 12368889999998876666666654
No 159
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=44.66 E-value=52 Score=27.65 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCC-CCHHHHHHHHHhcCCCCCCeEEEeccccCC-C-CCcHHHH
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIH-GQFHDLVELFRIGGNAPDTNYLFMGDYVDR-G-YYSVETV 94 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIH-G~~~~l~~ll~~~~~~~~~~lv~lGD~vdr-G-~~~~e~l 94 (185)
++++++|+..++.+ .+.+.++.--.|. |++| |++-.+..+..... .+.+.+++++|+-.. + +.+.+.+
T Consensus 14 e~~~~~el~~~l~~-----~~~~~v~~G~~PT---G~lHLG~~~~~~~~~~lq~-~g~~~~i~IaD~ha~~~~~~~~~~i 84 (329)
T PRK08560 14 EVVTEEELRELLES-----KEEPKAYIGFEPS---GKIHLGHLLTMNKLADLQK-AGFKVTVLLADWHAYLNDKGDLEEI 84 (329)
T ss_pred eecCHHHHHHHHhC-----CCCCEEEEccCCC---CcchhhhhHHHHHHHHHHH-CCCeEEEEEccchhhcCCCCCHHHH
Confidence 56889999988753 2333444332232 5667 55666555443222 244678889996542 1 2333332
Q ss_pred HH-----HHHHHH--hCCCcEEEEcCCC
Q 029935 95 TL-----LVALKV--RYRDRITILRGNH 115 (185)
Q Consensus 95 ~~-----l~~l~~--~~p~~v~~l~GNH 115 (185)
.. ...+.. ..|+++.++.+.+
T Consensus 85 ~~~~~~~~~~~~A~G~dp~k~~i~~qS~ 112 (329)
T PRK08560 85 RKVAEYNKKVFEALGLDPDKTEFVLGSE 112 (329)
T ss_pred HHHHHHHHHHHHHcCCChhheEEEecch
Confidence 22 112222 2456777777644
No 160
>TIGR01143 murF UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ.
Probab=42.55 E-value=1.7e+02 Score=25.16 Aligned_cols=84 Identities=12% Similarity=0.174 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCC--CCHHH-----HHHHHHhcCCCCCCeEEEecccc----C---C
Q 029935 21 PEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIH--GQFHD-----LVELFRIGGNAPDTNYLFMGDYV----D---R 86 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIH--G~~~~-----l~~ll~~~~~~~~~~lv~lGD~v----d---r 86 (185)
+++.+...++...+. + ..+++|+|+.- |+++. +.+.+. ....+.+|+.||-. + .
T Consensus 308 np~s~~~al~~l~~~----~-----~r~i~VlG~~~e~G~~~~~~~~~l~~~~~---~~~~d~vi~~g~~~~~~~~~~~~ 375 (417)
T TIGR01143 308 NPDSMRAALDALARF----P-----GKKILVLGDMAELGEYSEELHAEVGRYAN---SLGIDLVFLVGEEAAVIYDSLGC 375 (417)
T ss_pred CHHHHHHHHHHHHhC----C-----CCEEEEEcCchhcChHHHHHHHHHHHHHH---HcCCCEEEEECHHHHHHHHhccc
Confidence 356665555554321 1 24789999985 77766 333333 22358899999842 1 1
Q ss_pred -C---CCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 87 -G---YYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 87 -G---~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
. ++..++.+.+.+ ...|+.+++++|.+-..
T Consensus 376 ~~~~~~~~~~~~~~l~~--~~~~~d~VLlkGSr~~~ 409 (417)
T TIGR01143 376 KGFHFADKDELLAFLKL--ELGEGDVVLVKGSRSVK 409 (417)
T ss_pred CcEEECCHHHHHHHHHH--hcCCCCEEEEEeCCcCc
Confidence 1 123334444432 23456789999987654
No 161
>PRK04531 acetylglutamate kinase; Provisional
Probab=40.27 E-value=44 Score=28.99 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=10.2
Q ss_pred cCcEEEEecCCCCCC
Q 029935 157 ESQVFCLHGGLSPSL 171 (185)
Q Consensus 157 ~~~~l~vHaGi~p~~ 171 (185)
+.+.++|||| .|..
T Consensus 66 G~~~VlVHGg-gpqI 79 (398)
T PRK04531 66 GLTPIVVHGA-GPQL 79 (398)
T ss_pred CCcEEEEECC-CHHH
Confidence 5678999999 4443
No 162
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=40.14 E-value=1.2e+02 Score=24.82 Aligned_cols=57 Identities=14% Similarity=0.192 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEEe
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLFM 80 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~l 80 (185)
..+.-++++.+.+.... .| ..-..||++|-+.+. +..+..++|+.++.+|...+++|
T Consensus 67 ~~I~IdqIReL~~~l~~----~p--~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fIL 124 (263)
T PRK06581 67 KNISIEQIRKLQDFLSK----TS--AISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFL 124 (263)
T ss_pred CcccHHHHHHHHHHHhh----Cc--ccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEE
Confidence 45677777776654321 11 123568999999886 55667788999999888777665
No 163
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=39.40 E-value=88 Score=19.59 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=19.4
Q ss_pred HHHHHHHHHc--CCCCCHHHHHHHHHHHHH
Q 029935 7 LDRQIEHLMQ--CKPLPEQEVNILCEQARA 34 (185)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 34 (185)
+..++..+.. ..+++.+|+..+++.+.+
T Consensus 38 v~~~~~~~N~~~~~PL~~~Ev~~i~kSi~k 67 (71)
T PF08708_consen 38 VLSLAQAINSNFSPPLPESEVKAIAKSIAK 67 (71)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 4455555554 678889998888877654
No 164
>PRK14093 UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanine ligase; Provisional
Probab=38.74 E-value=1.7e+02 Score=25.71 Aligned_cols=66 Identities=15% Similarity=0.140 Sum_probs=45.8
Q ss_pred CCEEEEeC-CCCCHHHHHHHHHhcCCC----CCCeEEEeccccCCCCCcHHHHHHHHHHHHh-CCCcEEEEcC
Q 029935 47 CPVTVCGD-IHGQFHDLVELFRIGGNA----PDTNYLFMGDYVDRGYYSVETVTLLVALKVR-YRDRITILRG 113 (185)
Q Consensus 47 ~~i~vigD-IHG~~~~l~~ll~~~~~~----~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~-~p~~v~~l~G 113 (185)
..+.+|=| --.+.+++.++|+.+... +...++++||+...|+.+.+..+.+.+.-.. ..+ .+++-|
T Consensus 337 ~~~~iIDDsYahnP~s~~aaL~~l~~~~~~~~~r~i~V~G~m~elg~~~~~~h~~~~~~~~~~~~d-~v~~~G 408 (479)
T PRK14093 337 GEATLIDESYNANPASMAAALGVLGRAPVGPQGRRIAVLGDMLELGPRGPELHRGLAEAIRANAID-LVFCCG 408 (479)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhhccCCCCEEEEECChHHcCcHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence 35788888 344899999998877643 3457888999999999988877666554432 234 444446
No 165
>PRK11929 putative bifunctional UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase/UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase; Provisional
Probab=38.69 E-value=2e+02 Score=27.73 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=46.5
Q ss_pred CCEEEEeCCCC-CHHHHHHHHHhcCCCC-CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 47 CPVTVCGDIHG-QFHDLVELFRIGGNAP-DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 47 ~~i~vigDIHG-~~~~l~~ll~~~~~~~-~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
..+.+|=|-++ |.+++.++|+.+...+ ...++++|++-+.|+.+...-..+-+.........+++-|..-.
T Consensus 834 ~~~~iidDsya~np~s~~aaL~~l~~~~~~~~i~VlG~~~e~g~~~~~~h~~~g~~~~~~~~~~vi~~Ge~~~ 906 (958)
T PRK11929 834 CGTRIIDDTYNANPDSMRAAIDVLAELPNGPRALVLGDMLELGDNGPAMHREVGKYARQLGIDALITLGEAAR 906 (958)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHhccCCCEEEEECCchhcCcHHHHHHHHHHHHHHHcCCCEEEEECcCHH
Confidence 45778889763 8888999888776433 45788899999888888765444444322222345555575543
No 166
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=37.42 E-value=1.5e+02 Score=21.19 Aligned_cols=59 Identities=8% Similarity=-0.034 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHhcCCCCCCeEEEeccccCC-CCCcHHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 57 GQFHDLVELFRIGGNAPDTNYLFMGDYVDR-GYYSVETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 57 G~~~~l~~ll~~~~~~~~~~lv~lGD~vdr-G~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
-+.+.|.++++.+.....|.+|+.- +|| |-+..+++.++..+...++-.++++.++-|.
T Consensus 52 ~~Rp~l~~ll~~~~~g~vd~vvv~~--ldRl~R~~~d~~~~~~~l~~~~gv~l~~~~~~~d~ 111 (140)
T cd03770 52 FDRPGFNRMIEDIEAGKIDIVIVKD--MSRLGRNYLKVGLYMEILFPKKGVRFIAINDGVDS 111 (140)
T ss_pred CCCHHHHHHHHHHHcCCCCEEEEec--cchhccCHHHHHHHHHHHHhhcCcEEEEecCCcCC
Confidence 3678899999988766667666643 676 4445666776666665545678888877554
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=35.81 E-value=1.6e+02 Score=24.67 Aligned_cols=53 Identities=8% Similarity=-0.051 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeE
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNY 77 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~l 77 (185)
.+.-++++.+.+.+.. .|. .-..||++|-+.|. +..+..++|+.++.++...+
T Consensus 85 ~i~id~iR~l~~~~~~----~~~--~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~ 138 (328)
T PRK05707 85 TIKVDQVRELVSFVVQ----TAQ--LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTV 138 (328)
T ss_pred CCCHHHHHHHHHHHhh----ccc--cCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeE
Confidence 3566777776655433 121 23568999999987 67777888888888775533
No 168
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=35.58 E-value=1.5e+02 Score=20.42 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=26.0
Q ss_pred HhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEE
Q 029935 67 RIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITIL 111 (185)
Q Consensus 67 ~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l 111 (185)
+.+..-|+.++|++||- |....|+... ...++|+++.+|
T Consensus 57 ~i~~~fP~~kfiLIGDs---gq~DpeiY~~---ia~~~P~~i~ai 95 (100)
T PF09949_consen 57 RILRDFPERKFILIGDS---GQHDPEIYAE---IARRFPGRILAI 95 (100)
T ss_pred HHHHHCCCCcEEEEeeC---CCcCHHHHHH---HHHHCCCCEEEE
Confidence 33334577899999986 5555666654 346788887654
No 169
>PF14842 FliG_N: FliG N-terminal domain; PDB: 3HJL_A 3AJC_A 3USY_B.
Probab=35.11 E-value=1.4e+02 Score=20.63 Aligned_cols=54 Identities=11% Similarity=0.159 Sum_probs=34.5
Q ss_pred ChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHh
Q 029935 3 SQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRI 68 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~ 68 (185)
+.++++++...+.+-..++++++..++++-.........+ +.|..+....+|..
T Consensus 31 ~~~ei~~i~~~ma~l~~v~~~~~~~Vl~EF~~~~~~~~~~------------~~gg~~~~~~lL~~ 84 (108)
T PF14842_consen 31 DEEEIERISREMAKLGSVSPEEVEEVLEEFYDEIRAQGGI------------VSGGRDFARRLLEK 84 (108)
T ss_dssp -HHHHHHHHHHHHT-----HHHHHHHHHHHHHHHHHTT---------------S-HHHHHHH-HHH
T ss_pred CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHcccc------------ccChHHHHHHHHHH
Confidence 4577899999999999999999999999888866554443 36778888887754
No 170
>PHA02646 virion protein; Provisional
Probab=35.11 E-value=65 Score=24.09 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=26.4
Q ss_pred CCChhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 029935 1 MPSQADLDRQIEHLMQCKPLPEQEVNILCEQ 31 (185)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 31 (185)
||.|++++++..-+.++..+-+.++..+..+
T Consensus 1 ~~~medikklt~ii~~~~~v~~~di~~i~~e 31 (156)
T PHA02646 1 MMNLEEIKKITNIIHQFNIVCNVDIEKIYSS 31 (156)
T ss_pred CCCHHHHHHHHHHHHhCCccCHHHHHHHhhc
Confidence 8999999999888888888888887777655
No 171
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=34.89 E-value=1.4e+02 Score=23.59 Aligned_cols=60 Identities=17% Similarity=0.138 Sum_probs=38.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCC------CCHHHHHHHHHhcCCCCCCeEEEeccc
Q 029935 16 QCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIH------GQFHDLVELFRIGGNAPDTNYLFMGDY 83 (185)
Q Consensus 16 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIH------G~~~~l~~ll~~~~~~~~~~lv~lGD~ 83 (185)
++..+|..+....++++.++..... ..++++.||+- ..+..+.+.++... ...++.-|+-
T Consensus 34 ~Gi~~P~~~~~~~l~rl~~li~~~~-----~d~vIi~GDl~h~~~~~~~~~~~~~~l~~~~---~~v~~V~GNH 99 (225)
T TIGR00024 34 QGVMVPGFQFREIIERALSIADKYG-----IEALIINGDLKHEFKKGLEWRFIREFIEVTF---RDLILIRGNH 99 (225)
T ss_pred cCCcCChhHHHHHHHHHHHHHhhcC-----CCEEEEcCccccccCChHHHHHHHHHHHhcC---CcEEEECCCC
Confidence 4566888888888888888776643 23689999974 22444555666543 2455556665
No 172
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=34.15 E-value=2.5e+02 Score=23.37 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred CCeEEEeccccCCCCCcHHHHHHHHHHH-HhCC----CcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHH-Hh
Q 029935 74 DTNYLFMGDYVDRGYYSVETVTLLVALK-VRYR----DRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTD-LF 147 (185)
Q Consensus 74 ~~~lv~lGD~vdrG~~~~e~l~~l~~l~-~~~p----~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (185)
...+|++||+-=--+..++-|+.+.+.- ...| .-++++.||-=..-+... +... ..| .+.++.+.. .+
T Consensus 27 ~~~~VilSDV~LD~p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~~~-~~~~---~~y--k~~Fd~La~lll 100 (291)
T PTZ00235 27 RHNWIIMHDVYLDSPYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFDYN-RNFH---KVY--IKGFEKLSVMLI 100 (291)
T ss_pred ceEEEEEEeeccCCHHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCcccCC-CCch---HHH--HHHHHHHHHHHH
Confidence 3579999998643444444444444422 2223 567899999544322210 0000 011 112233333 34
Q ss_pred hcCCceEEEcCcEEEEecCCCCC
Q 029935 148 DYLPLTALIESQVFCLHGGLSPS 170 (185)
Q Consensus 148 ~~lP~~~~i~~~~l~vHaGi~p~ 170 (185)
...|.... .-+++||=|-=+|+
T Consensus 101 s~fp~L~~-~s~fVFVPGpnDPw 122 (291)
T PTZ00235 101 SKFKLILE-HCYLIFIPGINDPC 122 (291)
T ss_pred HhChHHHh-cCeEEEECCCCCCC
Confidence 55665544 45788888855554
No 173
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=33.69 E-value=1.1e+02 Score=22.55 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHH---HHHHHHhcCCCCCCeEEEec
Q 029935 23 QEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHD---LVELFRIGGNAPDTNYLFMG 81 (185)
Q Consensus 23 ~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~---l~~ll~~~~~~~~~~lv~lG 81 (185)
.++.++++++.++.++..+.- =++++||..+.... +.+.+.-....+.-+++..|
T Consensus 8 G~l~~~~~kv~~~~~k~gpFd----~~ic~Gdff~~~~~~~~~~~y~~g~~~~pipTyf~gg 65 (150)
T cd07380 8 GRLKALFEKVNTINKKKGPFD----ALLCVGDFFGDDEDDEELEAYKDGSKKVPIPTYFLGG 65 (150)
T ss_pred ccHHHHHHHHHHHhcccCCee----EEEEecCccCCccchhhHHHHhcCCccCCCCEEEECC
Confidence 467788888888876655443 46899999886543 44544432223333444444
No 174
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=33.59 E-value=76 Score=26.00 Aligned_cols=76 Identities=16% Similarity=0.100 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhhcc---cC-cceecCCCEEEEeCCCCCHHHHHHHHHhcC----CCCCCeEEEeccccCCCCCcHH
Q 029935 21 PEQEVNILCEQARAILVE---EW-NVQPVKCPVTVCGDIHGQFHDLVELFRIGG----NAPDTNYLFMGDYVDRGYYSVE 92 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~---~~-~~~~~~~~i~vigDIHG~~~~l~~ll~~~~----~~~~~~lv~lGD~vdrG~~~~e 92 (185)
+++||..|.+-+.+-+.. +. .+-....||.|+||.+==-..+.+.+.++. ....-.+++.=.|..| .|
T Consensus 97 s~eEVd~LM~L~~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr----~E 172 (271)
T KOG1602|consen 97 SPEEVDGLMDLALEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSR----DE 172 (271)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcH----HH
Confidence 588888888777766644 22 233456799999999976666666554332 2222345555555443 44
Q ss_pred HHHHHHHH
Q 029935 93 TVTLLVAL 100 (185)
Q Consensus 93 ~l~~l~~l 100 (185)
++..+...
T Consensus 173 I~~a~r~~ 180 (271)
T KOG1602|consen 173 ILHAVRGI 180 (271)
T ss_pred HHHHHHHH
Confidence 44444443
No 175
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=33.18 E-value=1.7e+02 Score=24.57 Aligned_cols=61 Identities=8% Similarity=-0.006 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEE-ecccc
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLF-MGDYV 84 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~-lGD~v 84 (185)
..+.-+++..+.+.+.. .| ..-..||++|-+.|- +..+-.++|+.++.+|...+++ +-+-.
T Consensus 86 ~~I~vdqiR~l~~~~~~----~~--~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 148 (319)
T PRK06090 86 KSITVEQIRQCNRLAQE----SS--QLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ 148 (319)
T ss_pred CcCCHHHHHHHHHHHhh----Cc--ccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh
Confidence 35677777766543321 12 123458999999985 5566778899998888765554 44533
No 176
>PRK01060 endonuclease IV; Provisional
Probab=33.05 E-value=1.6e+02 Score=23.44 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=34.9
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEec--cccCCCCCcHHHHHHHHHHHHhCC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMG--DYVDRGYYSVETVTLLVALKVRYR 105 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lG--D~vdrG~~~~e~l~~l~~l~~~~p 105 (185)
|++-+...+.|.+....+.++.+++.... ++++ .....+..+.+-++.+.++...++
T Consensus 2 ~~~g~~~~~~~~~~~~l~~~~~~G~d~vE--l~~~~p~~~~~~~~~~~~~~~lk~~~~~~g 60 (281)
T PRK01060 2 KLIGAHVSAAGGLEGAVAEAAEIGANAFM--IFTGNPQQWKRKPLEELNIEAFKAACEKYG 60 (281)
T ss_pred CeEEEeeecCCCHHHHHHHHHHcCCCEEE--EECCCCCCCcCCCCCHHHHHHHHHHHHHcC
Confidence 56777788888877777777777765433 3444 233334455556666666554543
No 177
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=32.92 E-value=2.2e+02 Score=21.56 Aligned_cols=93 Identities=11% Similarity=0.023 Sum_probs=54.0
Q ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcC-----------
Q 029935 2 PSQADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGG----------- 70 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~----------- 70 (185)
|||++...|+. .....++.+|+...+++....+.+.-.. ....++|=..|...-...+-+.++
T Consensus 1 ~~~~~~~~~~~--~~~~~~s~~~i~~~i~~la~~i~~~~~~----~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~ 74 (181)
T PRK09162 1 MSLEEIRQVLA--EADCLVSAAEVEAAIDRMADEITADLAD----ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHAT 74 (181)
T ss_pred CCHHHHHHHHh--hCcEeecHHHHHHHHHHHHHHHHHHcCC----CCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEE
Confidence 46776444454 3356789999999998877777653110 112344433333332222111111
Q ss_pred -------------------CCCCCeEEEeccccCCCCCcHHHHHHHHHH
Q 029935 71 -------------------NAPDTNYLFMGDYVDRGYYSVETVTLLVAL 100 (185)
Q Consensus 71 -------------------~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l 100 (185)
.....+++++=|++|.|.--.++.+.|.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~ 123 (181)
T PRK09162 75 RYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEM 123 (181)
T ss_pred ecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhC
Confidence 112346888999999988888888777654
No 178
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=32.40 E-value=4.2e+02 Score=24.71 Aligned_cols=104 Identities=15% Similarity=0.076 Sum_probs=61.5
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceec--------------CCCEEEEeCCCCCHHHHHHHHHhc--
Q 029935 6 DLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPV--------------KCPVTVCGDIHGQFHDLVELFRIG-- 69 (185)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~--------------~~~i~vigDIHG~~~~l~~ll~~~-- 69 (185)
++.+.++-+++++.+...-..-+++.. ..+.++.. -.+.-++.|++|.-+.+.++++.+
T Consensus 20 sl~eyL~~vk~~p~~~~~A~~R~~~~I-----g~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ieriv~~l~~ 94 (644)
T PRK15455 20 SLQEYLELCKQDPSAYANAAERLLMAI-----GEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQIVSYFRH 94 (644)
T ss_pred cHHHHHHHHhcChHHHhhHHHHHHHHh-----CCceeeecCccchhhhhhcccccccccchhcccCcHHHHHHHHHHHHH
Confidence 366777777777666665555555554 23332222 135667889999999988876533
Q ss_pred ---CCC-CCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcC------CCchhh
Q 029935 70 ---GNA-PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRG------NHESRQ 119 (185)
Q Consensus 70 ---~~~-~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~G------NHE~~~ 119 (185)
+.. +..-++++|=. +-|. -.+.+.|......+| ++.+.| -||..+
T Consensus 95 Aa~gl~~~~~IL~LvGPp-G~GK--SsLa~~la~~le~~~--~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 95 AAQGLEEKKQILYLLGPV-GGGK--SSLAERLKSLMERVP--IYVLKANGERSPVNESPL 149 (644)
T ss_pred HHHhcCCCCceEEEecCC-CCCc--hHHHHHHHHHHHhCc--ceeecCCCCCCCCCCCCC
Confidence 222 23345557754 3333 334455555555675 889999 566543
No 179
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=32.18 E-value=48 Score=28.92 Aligned_cols=38 Identities=11% Similarity=-0.032 Sum_probs=17.2
Q ss_pred CCEEEEeCCCCCHHHHHHHHHhcCC-CCCCeEEEeccccC
Q 029935 47 CPVTVCGDIHGQFHDLVELFRIGGN-APDTNYLFMGDYVD 85 (185)
Q Consensus 47 ~~i~vigDIHG~~~~l~~ll~~~~~-~~~~~lv~lGD~vd 85 (185)
.++.+.|+-+....- ..+++.+.. .+.|.++++||+|-
T Consensus 106 ~r~a~~SC~~~~~~~-~~~~~~~a~~~~~D~~l~lGD~IY 144 (453)
T PF09423_consen 106 FRFAFGSCQNYEDGY-FPAYRRIAERDDPDFVLHLGDQIY 144 (453)
T ss_dssp EEEEEE----CCC----HHHHHHTT-S--SEEEE-S-SS-
T ss_pred eEEEEECCCCcccCh-HHHHHhhhccCCCcEEEEeCCeee
Confidence 588999998764222 333333333 46789999999884
No 180
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.02 E-value=1.6e+02 Score=23.91 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=33.4
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
.+-++|- |....+...+..+...+.. .+++||-|. ..+.++.+... ++-.+..-|||=.
T Consensus 183 ~vk~VGg--g~ka~i~e~~~ele~~d~s-a~~VGDSIt----Dv~ml~~~rgr----GglAvaFNGNeYa 241 (315)
T COG4030 183 SVKAVGG--GEKAKIMEGYCELEGIDFS-AVVVGDSIT----DVKMLEAARGR----GGLAVAFNGNEYA 241 (315)
T ss_pred hhhhccC--cchhHHHHHHHhhcCCCcc-eeEecCccc----chHHHHHhhcc----CceEEEecCCccc
Confidence 3445554 5555555555444444433 788999773 34445544433 2456788899754
No 181
>PF14164 YqzH: YqzH-like protein
Probab=31.72 E-value=1.3e+02 Score=19.15 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcc
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNV 42 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~ 42 (185)
.++++.|...|++.+...-.+++..
T Consensus 24 ~pls~~E~~~L~~~i~~~~~~~~~~ 48 (64)
T PF14164_consen 24 MPLSDEEWEELCKHIQERKNEEPDE 48 (64)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCc
Confidence 4788999999999999998888763
No 182
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=31.71 E-value=2.1e+02 Score=24.13 Aligned_cols=56 Identities=9% Similarity=0.045 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEEe
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLFM 80 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~l 80 (185)
.+.-++++.+.+.+.. .|. .-..||++|-+.|- +..+-.++|+.++.+|...+++|
T Consensus 86 ~I~id~iR~l~~~~~~----~~~--~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL 142 (325)
T PRK06871 86 DIGVDQVREINEKVSQ----HAQ--QGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLL 142 (325)
T ss_pred CCCHHHHHHHHHHHhh----ccc--cCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 4566677666554322 111 22458999999986 55667788999998887755553
No 183
>PF05321 HHA: Haemolysin expression modulating protein; InterPro: IPR007985 This family consists of haemolysin expression modulating protein (Hha) from Escherichia coli and its enterobacterial homologues, such as YmoA from Yersinia enterocolitica, and RmoA encoded on the R100 plasmid. These proteins act as modulators of bacterial gene expression. Members of the Hha/YmoA/RmoA family act in conjunction with members of the H-NS family, participating in the thermoregulation of different virulence factors and in plasmid transfer []. Hha, along with the chromatin-associated protein H-NS, is involved in the regulation of expression of the toxin alpha-haemolysin in response to osmolarity and temperature []. YmoA modulates the expression of various virulence factors, such as Yop proteins and YadA adhesin, in response to temperature. RmoA is a plasmid R100 modulator involved in plasmid transfer []. The HHA family of proteins display striking similarity to the oligomerization domain of the H-NS proteins.; PDB: 1JW2_A 2K5S_A 2JQT_A.
Probab=31.27 E-value=1e+02 Score=19.07 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=24.2
Q ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhh
Q 029935 2 PSQADLDRQIEHLMQCKPLPEQEVNILCEQARAIL 36 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 36 (185)
+|.+++++++++.... ++.+|+..+..+|=.-+
T Consensus 7 ss~dtLEkv~e~~~~~--L~~~e~~~f~~AaDHR~ 39 (57)
T PF05321_consen 7 SSLDTLEKVIEHNRYK--LTDDELEAFNSAADHRR 39 (57)
T ss_dssp S-HHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHhhCc--CCHHHHHHHHHHHHHHH
Confidence 4678899999998887 88889888877664433
No 184
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=31.24 E-value=1.2e+02 Score=22.41 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCe-EEEeccc
Q 029935 20 LPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTN-YLFMGDY 83 (185)
Q Consensus 20 ~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~-lv~lGD~ 83 (185)
+..+++..+.+. +...|.. -..||+||-|.|- +..+..++|+.++.++... +|++-+-
T Consensus 82 i~i~~ir~i~~~----~~~~~~~--~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 82 IKIDQIREIIEF----LSLSPSE--GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp BSHHHHHHHHHH----CTSS-TT--SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred hhHHHHHHHHHH----HHHHHhc--CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 455665555444 2221221 3468899988886 6666677778777776654 3444443
No 185
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=29.91 E-value=2.1e+02 Score=23.66 Aligned_cols=55 Identities=13% Similarity=0.147 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEE
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLF 79 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~ 79 (185)
.+.-++++.+++.... .| . .-..||+||-|.+- +-.+-.++|+.++.++...+++
T Consensus 83 ~I~idqIR~l~~~~~~----~p-~-~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~i 138 (290)
T PRK07276 83 VIKTDTIRELVKNFSQ----SG-Y-EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIF 138 (290)
T ss_pred cCCHHHHHHHHHHHhh----Cc-c-cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 4566777776655432 12 2 23458999999885 4556778899998888765544
No 186
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.87 E-value=76 Score=25.63 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcC----CCCCCeEEEeccccCCCCCcHHHHHH
Q 029935 21 PEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGG----NAPDTNYLFMGDYVDRGYYSVETVTL 96 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~----~~~~~~lv~lGD~vdrG~~~~e~l~~ 96 (185)
|++|+..|++...+.+..+. +.....++-+|||+-.=-+.+.+.++.+. ....-.+.++=.|-.| -|++..
T Consensus 71 ~~~Ev~~Lm~l~~~~l~~~~-~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr----~EI~~A 145 (242)
T PRK14838 71 PSDEVAALMSLLLDSIEEET-FMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSR----WEITEA 145 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCH----HHHHHH
Confidence 68999999988888887653 54567899999999765556666654332 2222245555555433 344444
Q ss_pred HHHH
Q 029935 97 LVAL 100 (185)
Q Consensus 97 l~~l 100 (185)
+.++
T Consensus 146 ~~~~ 149 (242)
T PRK14838 146 TRQI 149 (242)
T ss_pred HHHH
Confidence 4443
No 187
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=29.68 E-value=2e+02 Score=24.46 Aligned_cols=60 Identities=12% Similarity=0.103 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCe-EEEecccc
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTN-YLFMGDYV 84 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~-lv~lGD~v 84 (185)
.+.-+++..+.+.+. ..| ..-..||+||-|.|- +..+-.++|+.++.++... +|++..-.
T Consensus 111 ~I~idqiR~l~~~~~----~~~--~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~ 172 (342)
T PRK06964 111 EIKIEQVRALLDFCG----VGT--HRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARI 172 (342)
T ss_pred ccCHHHHHHHHHHhc----cCC--ccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECCh
Confidence 477788887776533 111 123458999999885 5566678888888877664 44465543
No 188
>smart00411 BHL bacterial (prokaryotic) histone like domain.
Probab=29.47 E-value=1e+02 Score=20.10 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcc
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVE 38 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 38 (185)
.+++++.+.....++..++..+++...+.+..
T Consensus 3 k~eli~~ia~~~~~~~~~v~~vl~~l~~~i~~ 34 (90)
T smart00411 3 KSELIDAIAEKAGLSKKDAKAAVDAFLEIITE 34 (90)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 56677777777778988888888776666544
No 189
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=29.30 E-value=93 Score=19.33 Aligned_cols=26 Identities=12% Similarity=0.233 Sum_probs=17.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQA 32 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~ 32 (185)
+..+++.+.++..++.+|+..+++..
T Consensus 2 ~~~~l~~l~~g~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 2 IKEILKKLRDGEDLSREEAKAAFDAI 27 (66)
T ss_dssp HHHHHHHHHTT----HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 67788888888899999988887764
No 190
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=29.23 E-value=1.4e+02 Score=24.32 Aligned_cols=64 Identities=20% Similarity=0.105 Sum_probs=36.6
Q ss_pred EEEeCCCCCHH--HHHHHHHhcC-CCCCCeEEEeccccCCCCC-cHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 50 TVCGDIHGQFH--DLVELFRIGG-NAPDTNYLFMGDYVDRGYY-SVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 50 ~vigDIHG~~~--~l~~ll~~~~-~~~~~~lv~lGD~vdrG~~-~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
.+||||=|... ++.+.|..+. ....|.+|..|.-...|.. +.+..+.|.+... =++-.|||=..
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~G~Git~~~~~~L~~~Gv-----DviT~GNH~wd 68 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAGGFGITPKIAEELFKAGV-----DVITMGNHIWD 68 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTTTSS--HHHHHHHHHHT------SEEE--TTTTS
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCCCCCCCHHHHHHHHhcCC-----CEEecCccccc
Confidence 47999998644 4566665543 3456888999998876664 4555666666542 25667999653
No 191
>PRK10945 gene expression modulator; Provisional
Probab=29.20 E-value=1.3e+02 Score=19.48 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=19.6
Q ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 029935 2 PSQADLDRQIEHLMQCKPLPEQEVNILCEQAR 33 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 33 (185)
+|.++++++++..... ++.+|+..+..+|=
T Consensus 19 ss~eTLEkvie~~~~~--L~~~E~~~f~~AaD 48 (72)
T PRK10945 19 QTIDTLERVIEKNKYE--LSDDELAVFYSAAD 48 (72)
T ss_pred CcHHHHHHHHHHhhcc--CCHHHHHHHHHHHH
Confidence 3567777777765544 77777777766543
No 192
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=29.07 E-value=2.2e+02 Score=25.41 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred CCCCeEEEeccccCCCCCcHHHHHHHHHHHH---hCCCcEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhh
Q 029935 72 APDTNYLFMGDYVDRGYYSVETVTLLVALKV---RYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFD 148 (185)
Q Consensus 72 ~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~---~~p~~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (185)
..+..+|||-|+.= +..++++.+..+-. ..|...+++.||--..-. . .. ....++.--++++
T Consensus 280 ~~d~~fVfLSdV~L---D~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~----~--~~------s~~~~k~~f~~LA 344 (525)
T KOG3818|consen 280 NTDTSFVFLSDVFL---DDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPR----Q--TS------SSDQLKDGFRWLA 344 (525)
T ss_pred CcCceEEEEehhcc---ccHHHHHHHHHHHhhccCCCCeEEEEecccccccc----c--cc------hHHHHHHHHHHHH
Confidence 34568999988763 44555555554433 467788899998433211 1 00 1122223233333
Q ss_pred cC--CceEEE-cCcEEEEecCCCCCCCC
Q 029935 149 YL--PLTALI-ESQVFCLHGGLSPSLDT 173 (185)
Q Consensus 149 ~l--P~~~~i-~~~~l~vHaGi~p~~~~ 173 (185)
.. +..... .-+++||-|-=+|..+.
T Consensus 345 ~~l~~~~~~~ekT~fIFVPGP~Dp~~~~ 372 (525)
T KOG3818|consen 345 AQLTCFRKDYEKTQFIFVPGPNDPWVDN 372 (525)
T ss_pred hhccccccccccceEEEecCCCCCCcCc
Confidence 32 222221 24699998877777653
No 193
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=29.02 E-value=1.9e+02 Score=23.67 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEE-ecc
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLF-MGD 82 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~-lGD 82 (185)
.+..++++.+.++.. .++......||++|-+.+- +..+..++|+.++.+|...+++ +.+
T Consensus 66 ~I~id~ir~l~~~l~-----~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~ 126 (261)
T PRK05818 66 PIKKEDALSIINKLN-----RPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTR 126 (261)
T ss_pred cCCHHHHHHHHHHHc-----cCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEEC
Confidence 356677776655532 1222223569999999885 5567788999999888775554 554
No 194
>PF00216 Bac_DNA_binding: Bacterial DNA-binding protein; InterPro: IPR000119 Bacteria synthesise a set of small, usually basic proteins of about 90 residues that bind DNA and are known as histone-like proteins [, ]. Examples include the HU protein in Escherichia coli is a dimer of closely related alpha and beta chains and in other bacteria can be a dimer of identical chains. HU-type proteins have been found in a variety of eubacteria, cyanobacteria and archaebacteria, and are also encoded in the chloroplast genome of some algae []. The integration host factor (IHF), a dimer of closely related chains which seem to function in genetic recombination as well as in translational and transcriptional control [] is found in enterobacteria and viral proteins include the African Swine fever virus protein A104R (or LMW5-AR) []. The exact function of these proteins is not yet clear but they are capable of wrapping DNA and stabilising it from denaturation under extreme environmental conditions. The structure is known for one of these proteins []. The protein exists as a dimer and two "beta-arms" function as the non-specific binding site for bacterial DNA. ; GO: 0003677 DNA binding; PDB: 3C4I_B 2O97_A 1MUL_A 1P78_A 1P51_C 1P71_B 2HT0_A 1OWG_A 2IIF_A 1OUZ_A ....
Probab=28.38 E-value=61 Score=21.16 Aligned_cols=32 Identities=13% Similarity=0.228 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcc
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVE 38 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 38 (185)
-+++++.+.....++..++..+++...+.+..
T Consensus 3 k~eli~~ia~~~~~s~~~v~~vl~~~~~~i~~ 34 (90)
T PF00216_consen 3 KKELIKRIAEKTGLSKKDVEAVLDALFDVIKE 34 (90)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 45666666666668999988888777666654
No 195
>PRK10997 yieM hypothetical protein; Provisional
Probab=28.19 E-value=3.3e+02 Score=24.49 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=31.0
Q ss_pred CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEE-EEcCCCchhhh
Q 029935 74 DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRIT-ILRGNHESRQI 120 (185)
Q Consensus 74 ~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~-~l~GNHE~~~~ 120 (185)
...+|++.|+++.+. +.++++.+..++.....+++ +..|+|....+
T Consensus 417 ~adIVVISDF~~~~~-~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l 463 (487)
T PRK10997 417 DADAVVISDFIAQRL-PDELVAKVKELQRQHQHRFHAVAMSAHGKPGI 463 (487)
T ss_pred CceEEEECCCCCCCC-hHHHHHHHHHHHHhcCcEEEEEEeCCCCCchH
Confidence 457899999987554 46777888887765555665 44566665433
No 196
>COG5526 Lysozyme family protein [General function prediction only]
Probab=27.59 E-value=1.6e+02 Score=22.22 Aligned_cols=54 Identities=19% Similarity=0.227 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcccCcceec----CCCEEEEeCCCCC
Q 029935 5 ADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEEWNVQPV----KCPVTVCGDIHGQ 58 (185)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~----~~~i~vigDIHG~ 58 (185)
+.+++=-++.-+.-++.++=+...-..+++++...|...++ ..+-++||=||-.
T Consensus 10 ~~lk~eY~rlw~~cqiRpewa~~vkk~~k~ila~k~rYe~i~sqT~iPW~fiG~iH~~ 67 (191)
T COG5526 10 DELKEEYERLWEKCQIRPEWASVVKKEAKRILAGKPRYEQIESQTGIPWWFIGLIHYR 67 (191)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHhcCCccchhhhcccCCCeeeeehhhhh
Confidence 44444444455555777777777778889999888876555 3478999999954
No 197
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=27.53 E-value=2.4e+02 Score=20.46 Aligned_cols=83 Identities=14% Similarity=0.195 Sum_probs=53.4
Q ss_pred eEEEeccccCCCCCcHHHHHHHHHHHHhCCC-cEEEEcCCCchhhhhhhhCCHHHHHHHhCCHHHHHHHHHHhhcCCceE
Q 029935 76 NYLFMGDYVDRGYYSVETVTLLVALKVRYRD-RITILRGNHESRQITQVYGFYDECLRKYGNANVWKHFTDLFDYLPLTA 154 (185)
Q Consensus 76 ~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~-~v~~l~GNHE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~ 154 (185)
.+++-||= .|-|++..+--.|-++...+++ ++.+..=|=|. ..+...+|+ +.++|...
T Consensus 38 vl~~~gdp-~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~---------~~~LA~~fg-----------V~siPTLl 96 (132)
T PRK11509 38 VVLLSSDP-KRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ---------SEAIGDRFG-----------VFRFPATL 96 (132)
T ss_pred EEEeCCCC-CcCCccccHHHHHHHHHHHhcCCceEEEEEECCC---------CHHHHHHcC-----------CccCCEEE
Confidence 44447887 5888888888888888888873 34444334332 233444554 56888554
Q ss_pred EE-cCcEEEEecCCCCCCCCHHHhhc
Q 029935 155 LI-ESQVFCLHGGLSPSLDTLDNIRA 179 (185)
Q Consensus 155 ~i-~~~~l~vHaGi~p~~~~~~~i~~ 179 (185)
.. +|+.+-...|..+.-.+.+.|++
T Consensus 97 ~FkdGk~v~~i~G~~~k~~l~~~I~~ 122 (132)
T PRK11509 97 VFTGGNYRGVLNGIHPWAELINLMRG 122 (132)
T ss_pred EEECCEEEEEEeCcCCHHHHHHHHHH
Confidence 44 67888888888776555555543
No 198
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=27.35 E-value=85 Score=25.08 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHhhcccC-cceecCCCEEEEeCCCCCHHHHHHHHHhcC----CCCCCeEEEeccccCCCCCcHHHHH
Q 029935 21 PEQEVNILCEQARAILVEEW-NVQPVKCPVTVCGDIHGQFHDLVELFRIGG----NAPDTNYLFMGDYVDRGYYSVETVT 95 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~-~~~~~~~~i~vigDIHG~~~~l~~ll~~~~----~~~~~~lv~lGD~vdrG~~~~e~l~ 95 (185)
|++||..|++-..+.+.++- .+.....++-+|||+-.=-+.+.+.++.+. ....-.+.++=.|-.| -|+++
T Consensus 60 p~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i~~~e~~T~~n~~~~lnia~~Yggr----~EI~~ 135 (226)
T TIGR00055 60 PKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIKKAEEDTKNNTDFTLNIAFNYGGR----NEILH 135 (226)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCH----HHHHH
Confidence 68999999888888887643 344557799999999876677776664332 2222244444444333 35555
Q ss_pred HHHHHH
Q 029935 96 LLVALK 101 (185)
Q Consensus 96 ~l~~l~ 101 (185)
.+.++.
T Consensus 136 A~~~~~ 141 (226)
T TIGR00055 136 AVKQIA 141 (226)
T ss_pred HHHHHH
Confidence 555443
No 199
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=27.13 E-value=1.1e+02 Score=25.62 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=26.8
Q ss_pred HHhcCCCCCCeEEEecc-ccCCCCCcHHHHHHHHH
Q 029935 66 FRIGGNAPDTNYLFMGD-YVDRGYYSVETVTLLVA 99 (185)
Q Consensus 66 l~~~~~~~~~~lv~lGD-~vdrG~~~~e~l~~l~~ 99 (185)
++..++...|.+++.|| |||--.....++-.+.+
T Consensus 9 m~~rGWd~lDvilVtGDAYVDHPsFG~AiIgR~Le 43 (302)
T PF08497_consen 9 MKARGWDELDVILVTGDAYVDHPSFGAAIIGRVLE 43 (302)
T ss_pred HHHcCCccccEEEEeCcccccCcchhHHHHHHHHH
Confidence 45677888889999999 88887777777776654
No 200
>PRK11930 putative bifunctional UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase/alanine racemase; Provisional
Probab=26.95 E-value=5e+02 Score=24.70 Aligned_cols=69 Identities=14% Similarity=0.084 Sum_probs=46.3
Q ss_pred CCEEEEeCCC-CCHHHHHHHHHhcCCCC--CCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCC
Q 029935 47 CPVTVCGDIH-GQFHDLVELFRIGGNAP--DTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNH 115 (185)
Q Consensus 47 ~~i~vigDIH-G~~~~l~~ll~~~~~~~--~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNH 115 (185)
..+.+|=|-+ .+.+++.+.|+.+.... ..+++.+||+..-|..+.+..+-+.+.-....-..+++.|.+
T Consensus 329 ~g~~vIdDSyn~nP~s~~aaL~~l~~~~~~~~~ilIlG~m~elG~~~~~~~~~l~~~l~~~~i~~vi~~G~~ 400 (822)
T PRK11930 329 NNCTLINDSYNSDLQSLDIALDFLNRRSQSKKKTLILSDILQSGQSPEELYRKVAQLISKRGIDRLIGIGEE 400 (822)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEECChHhcCchHHHHHHHHHHHHHHcCCCEEEEECHH
Confidence 4578899954 48899999988775322 357888999988788888877666543332212345556753
No 201
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=26.76 E-value=1e+02 Score=20.72 Aligned_cols=91 Identities=14% Similarity=0.094 Sum_probs=44.1
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhhcccCcceecCC-----CEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCC
Q 029935 13 HLMQCKPLPEQEVNILCEQARAILVEEWNVQPVKC-----PVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRG 87 (185)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~-----~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG 87 (185)
.......++.+++..++++.. ...+++... .-.+-|=+|=.+..+...+..+...+...+|+. +..|
T Consensus 5 ~~~~~~~i~~~~l~~~~~~~~-----~~~liDvR~~~e~~~ghIpgainip~~~l~~~~~~l~~~~~~~ivv~---C~~G 76 (109)
T cd01533 5 AVRHTPSVSADELAALQARGA-----PLVVLDGRRFDEYRKMTIPGSVSCPGAELVLRVGELAPDPRTPIVVN---CAGR 76 (109)
T ss_pred ccccCCcCCHHHHHHHHhcCC-----CcEEEeCCCHHHHhcCcCCCceeCCHHHHHHHHHhcCCCCCCeEEEE---CCCC
Confidence 334445677888777664311 112333221 112223334455556555555543444455554 4567
Q ss_pred CCcHHHHHHHHHHHHhCCCcEEEEcC
Q 029935 88 YYSVETVTLLVALKVRYRDRITILRG 113 (185)
Q Consensus 88 ~~~~e~l~~l~~l~~~~p~~v~~l~G 113 (185)
..+......+..+. +++.++.+.|
T Consensus 77 ~rs~~a~~~L~~~G--~~~~v~~l~g 100 (109)
T cd01533 77 TRSIIGAQSLINAG--LPNPVAALRN 100 (109)
T ss_pred chHHHHHHHHHHCC--CCcceeEecC
Confidence 77766665554432 2212666655
No 202
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=26.17 E-value=1.5e+02 Score=24.33 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=21.2
Q ss_pred CCeEEEeccccCCCCCcHHHHHHHHHHHHhCC
Q 029935 74 DTNYLFMGDYVDRGYYSVETVTLLVALKVRYR 105 (185)
Q Consensus 74 ~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p 105 (185)
...+|++||+ +-.+.+.+.-.++..|....|
T Consensus 177 ~~pvIl~GDf-N~~~~s~~~~~ml~~l~~~~p 207 (283)
T TIGR03395 177 DETVLIGGDL-NVNKGSNEYHDMFKTLNVSEP 207 (283)
T ss_pred CceEEEEeeC-CCCCCCHHHHHHHHHhcccCC
Confidence 4468999998 445677777777666664444
No 203
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=25.72 E-value=1.4e+02 Score=17.18 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=14.0
Q ss_pred CChhHHHHHHHHHHcCC
Q 029935 2 PSQADLDRQIEHLMQCK 18 (185)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (185)
||.++++++++.+..++
T Consensus 1 MS~~~l~~Fl~~~~~d~ 17 (49)
T PF07862_consen 1 MSIESLKAFLEKVKSDP 17 (49)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 67888999999888764
No 204
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=25.71 E-value=2.5e+02 Score=21.64 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCH-HHHHHHHHhcCCCCCC-eEEEeccccCCCCCcHHHHHHHHHH
Q 029935 23 QEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQF-HDLVELFRIGGNAPDT-NYLFMGDYVDRGYYSVETVTLLVAL 100 (185)
Q Consensus 23 ~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~-~~l~~ll~~~~~~~~~-~lv~lGD~vdrG~~~~e~l~~l~~l 100 (185)
..+..=++.|...|+..+.-.....-++++|+.+-+- ..+.++.+.+...... .+|-+|+-. ...+.|+.+.+-
T Consensus 85 ~~l~~AL~~A~~~L~~~~~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~----~~~~~l~~~~~~ 160 (187)
T cd01452 85 ANFITGIQIAQLALKHRQNKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID----DNTEKLTAFIDA 160 (187)
T ss_pred chHHHHHHHHHHHHhcCCCcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC----CCHHHHHHHHHH
Confidence 3455567777777776444322222278888875543 4454555555443433 567799884 445666666554
Q ss_pred H
Q 029935 101 K 101 (185)
Q Consensus 101 ~ 101 (185)
.
T Consensus 161 ~ 161 (187)
T cd01452 161 V 161 (187)
T ss_pred h
Confidence 3
No 205
>KOG3818 consensus DNA polymerase epsilon, subunit B [Replication, recombination and repair]
Probab=25.57 E-value=4.9e+02 Score=23.29 Aligned_cols=74 Identities=15% Similarity=0.197 Sum_probs=46.6
Q ss_pred CCCEEEEeCCCCCHH----HHHHHHHhcCCCCCCeEEEeccccCC--CCCcHHH----HHHHHHHHHh-----CCCcEEE
Q 029935 46 KCPVTVCGDIHGQFH----DLVELFRIGGNAPDTNYLFMGDYVDR--GYYSVET----VTLLVALKVR-----YRDRITI 110 (185)
Q Consensus 46 ~~~i~vigDIHG~~~----~l~~ll~~~~~~~~~~lv~lGD~vdr--G~~~~e~----l~~l~~l~~~-----~p~~v~~ 110 (185)
+..++++||+|=+-. +|.+++......+...+|+.|.+..+ +..+..- +.+|...-.. ...++++
T Consensus 282 d~~fVfLSdV~LD~~~vm~aL~kifqgy~~~pP~~iIlcG~FtS~p~~~~s~~~~k~~f~~LA~~l~~~~~~~ekT~fIF 361 (525)
T KOG3818|consen 282 DTSFVFLSDVFLDDKKVMEALRKIFQGYKDAPPTAIILCGSFTSSPRQTSSSDQLKDGFRWLAAQLTCFRKDYEKTQFIF 361 (525)
T ss_pred CceEEEEehhccccHHHHHHHHHHHhhccCCCCeEEEEeccccccccccchHHHHHHHHHHHHhhccccccccccceEEE
Confidence 346788899987644 45556666666777899999999875 3333222 2222222111 1247899
Q ss_pred EcCCCchhh
Q 029935 111 LRGNHESRQ 119 (185)
Q Consensus 111 l~GNHE~~~ 119 (185)
|+|--|-+.
T Consensus 362 VPGP~Dp~~ 370 (525)
T KOG3818|consen 362 VPGPNDPWV 370 (525)
T ss_pred ecCCCCCCc
Confidence 999888864
No 206
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=25.40 E-value=1.5e+02 Score=22.29 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=29.7
Q ss_pred hhHHHHHHH--HHHcCCCCCHHHHHHHHHHHHHhhcccCc
Q 029935 4 QADLDRQIE--HLMQCKPLPEQEVNILCEQARAILVEEWN 41 (185)
Q Consensus 4 ~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 41 (185)
|++++.|+. .++++..++.+++..||+...+.++.+..
T Consensus 110 Q~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~~ 149 (175)
T PF04876_consen 110 QPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAESS 149 (175)
T ss_pred HHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccCC
Confidence 456666664 35566789999999999999999988765
No 207
>PF10009 DUF2252: Uncharacterized protein conserved in bacteria (DUF2252); InterPro: IPR018721 This domain has no known function.
Probab=25.26 E-value=86 Score=27.07 Aligned_cols=52 Identities=25% Similarity=0.569 Sum_probs=34.1
Q ss_pred ceecCCCEEEEeCCC-CCHHHHHHHHHhcCCCCCCeEEE-eccccC--CCCCcHHHHHHHHHHH
Q 029935 42 VQPVKCPVTVCGDIH-GQFHDLVELFRIGGNAPDTNYLF-MGDYVD--RGYYSVETVTLLVALK 101 (185)
Q Consensus 42 ~~~~~~~i~vigDIH-G~~~~l~~ll~~~~~~~~~~lv~-lGD~vd--rG~~~~e~l~~l~~l~ 101 (185)
..+...++.++||.| +|+..+. .++..+|| +=|+=. -||..-++..++.++.
T Consensus 37 ~~~~~~~v~icGD~Hl~NFG~~~--------~~~~~~vFdiNDFDEa~~gp~~wDl~Rla~Si~ 92 (385)
T PF10009_consen 37 TPPSGPPVWICGDAHLENFGAFA--------SPEGRVVFDINDFDEALPGPFEWDLKRLATSIV 92 (385)
T ss_pred CCCCCCceEEeccchhhccCccc--------CCCCCEEecCCCCCcCCcCChHHHHHHHHHHHH
Confidence 334456899999999 4554432 45667888 777632 2677777777776654
No 208
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=25.11 E-value=1e+02 Score=26.12 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhhccc----CcceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 21 PEQEVNILCEQARAILVEE----WNVQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~----~~~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
|++||..|++-..+.+.++ +.+.....|+-+|||+-.=-+.+.+.++.+
T Consensus 80 p~~EV~~Lm~L~~~~l~~~~~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~ 132 (322)
T PTZ00349 80 SPEEIHFLFYLNLLILINEDFFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDI 132 (322)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHH
Confidence 6889998888887777665 334456779999999977666677666543
No 209
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=24.60 E-value=94 Score=21.74 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=34.1
Q ss_pred HHHHhcCCCCCCeEEEeccccCCCCCcHH-------------HHHHHHHHHHhCCCcEEEEcCCCch
Q 029935 64 ELFRIGGNAPDTNYLFMGDYVDRGYYSVE-------------TVTLLVALKVRYRDRITILRGNHES 117 (185)
Q Consensus 64 ~ll~~~~~~~~~~lv~lGD~vdrG~~~~e-------------~l~~l~~l~~~~p~~v~~l~GNHE~ 117 (185)
.+.+.+.....+++++.=|+.-.+..... +++.+.....+.+..+.++..+||.
T Consensus 28 eV~~Al~~GaV~~LlI~d~l~~~~~~~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~~e~ 94 (113)
T PF03465_consen 28 EVKKALEMGAVETLLISDDLFRSRDVERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSEHEE 94 (113)
T ss_dssp HHHHHHHTT-EEEEEEEHHHHTESCHHHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TTSHH
T ss_pred HHHHHHHhCCCcEEEEecccccccceeccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCCCcc
Confidence 33333334445566666666554433222 4788888888888899999999996
No 210
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=24.48 E-value=2.1e+02 Score=24.17 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=37.8
Q ss_pred HHHHHHHHhhccc-CcceecCC-----CEEEEeCCCCCHHHHH-HHHHhcCCCCCCeEEE--ecccc
Q 029935 27 ILCEQARAILVEE-WNVQPVKC-----PVTVCGDIHGQFHDLV-ELFRIGGNAPDTNYLF--MGDYV 84 (185)
Q Consensus 27 ~l~~~~~~~l~~~-~~~~~~~~-----~i~vigDIHG~~~~l~-~ll~~~~~~~~~~lv~--lGD~v 84 (185)
+.+..|+-++.+. ..+..++| .+.||.|=|.+-.-.. .+|.+++..++.++|. +|+-.
T Consensus 219 QfVTAAKM~vQNd~~AlvsIDmPAGPSEVLVIADE~a~p~~vA~DLLSQAEHG~DSQviLv~V~lS~ 285 (446)
T KOG2697|consen 219 QFVTAAKMIVQNDYEALVSIDMPAGPSEVLVIADEHASPVYVAADLLSQAEHGPDSQVILVVVGLSV 285 (446)
T ss_pred hhhhhhhhheeccccceEEeccCCCCceEEEEecCCCChHHHHHHHHhHhhcCCCceEEEEEecCCH
Confidence 3455555555444 44555555 4999999999877654 5777777767766665 55543
No 211
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.38 E-value=2.4e+02 Score=19.70 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=11.9
Q ss_pred CEEEEeCCCCCHHHHHHHHHhcC
Q 029935 48 PVTVCGDIHGQFHDLVELFRIGG 70 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~~ 70 (185)
++++-+|=+-.|..+..+++.++
T Consensus 86 ~v~i~aD~~~~~~~vv~v~d~~~ 108 (121)
T TIGR02804 86 KVTLKSDKEAKFQDFVTITDMLK 108 (121)
T ss_pred eEEEEeCCCCCHhHHHHHHHHHH
Confidence 45555555555555555554443
No 212
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=24.35 E-value=2e+02 Score=26.02 Aligned_cols=52 Identities=12% Similarity=0.157 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCCCHHHHHHHHHhcCCC
Q 029935 18 KPLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNA 72 (185)
Q Consensus 18 ~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~ 72 (185)
.+++.+++..+++.+..+=.......+ -++|=.||+..+..|..+++++...
T Consensus 481 ~~~~d~~Lq~i~~eS~~ie~~yghyfD---~iIvN~dld~t~~eL~~~iekl~te 532 (542)
T KOG0609|consen 481 KQFTDEDLQEIIDESARIEQQYGHYFD---LIIVNSDLDKTFRELKTAIEKLRTE 532 (542)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhhhhee---EEEEcCcHHHHHHHHHHHHHHhccC
Confidence 468999999999999998888777764 3677789999999999999887643
No 213
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=24.26 E-value=3.1e+02 Score=22.79 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=25.8
Q ss_pred CCCEEEEeCCCCC-HHHHHHHHHhcCCCCCCeEEEe
Q 029935 46 KCPVTVCGDIHGQ-FHDLVELFRIGGNAPDTNYLFM 80 (185)
Q Consensus 46 ~~~i~vigDIHG~-~~~l~~ll~~~~~~~~~~lv~l 80 (185)
..||++|-|.+.- -.+..++++.++.+|...++++
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il 125 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLL 125 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEE
Confidence 6689999998753 3456678888888887765554
No 214
>TIGR00987 himA integration host factor, alpha subunit. This protein forms a site-specific DNA-binding heterodimer with the integration host factor beta subunit. It is closely related to the DNA-binding protein HU.
Probab=24.21 E-value=1.3e+02 Score=20.11 Aligned_cols=32 Identities=19% Similarity=0.047 Sum_probs=22.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcc
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVE 38 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 38 (185)
.+++++.+.....++..++..+++...+.+..
T Consensus 4 k~eli~~ia~~~~~s~~~v~~vv~~~~~~i~~ 35 (96)
T TIGR00987 4 KAEMSEYLFDELGLSKREAKELVELFFEEIRR 35 (96)
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 55667777776778988888777776665533
No 215
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=23.62 E-value=90 Score=25.61 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=15.4
Q ss_pred CCCcHHHHHHHHHHHHhCC---CcEEEE
Q 029935 87 GYYSVETVTLLVALKVRYR---DRITIL 111 (185)
Q Consensus 87 G~~~~e~l~~l~~l~~~~p---~~v~~l 111 (185)
|.+..|+=+|+...+...| .++.+|
T Consensus 13 ~~~~~e~~~~l~~f~~~~~~~~~~f~VI 40 (271)
T cd04236 13 GGDPREARYWLTQFQIAMPNDWPAFAVL 40 (271)
T ss_pred CCCHHHHHHHHHHhhccCCCCCCCEEEE
Confidence 4466788888887775433 345444
No 216
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.46 E-value=1e+02 Score=24.69 Aligned_cols=49 Identities=18% Similarity=0.239 Sum_probs=36.0
Q ss_pred CHHHHHHHHHHHHHhhcccCc-ceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 21 PEQEVNILCEQARAILVEEWN-VQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~-~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
|++||..|++...+.+.++.. +.....++-+|||+-.=-+.+.+.++.+
T Consensus 67 p~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~ 116 (230)
T PRK14837 67 TDSEIEHLMFLIADYLSSEFNFYKKNNIKIIVSGDIESLSEEVKKSIKDA 116 (230)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHH
Confidence 689999988888887765433 3445679999999987666677666543
No 217
>COG3792 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.46 E-value=9.7 Score=27.34 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=16.9
Q ss_pred EeCCCC------CHHHHHHHHHhcCCCCCCeEEEeccccCCC
Q 029935 52 CGDIHG------QFHDLVELFRIGGNAPDTNYLFMGDYVDRG 87 (185)
Q Consensus 52 igDIHG------~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG 87 (185)
+||.|| ..+.+....+ +-++.+||+.|.|
T Consensus 26 i~~~~g~~~~~~d~dsfeE~kn-------df~~ll~~lld~G 60 (122)
T COG3792 26 IGDAYGLSSGQRDPDSFEERKN-------DFFFLLGDLLDEG 60 (122)
T ss_pred HHHHhCCccccCChhhHHHHHH-------HHHHHHHHHhcCC
Confidence 455666 5555555444 3456678877663
No 218
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=22.92 E-value=5.3e+02 Score=22.78 Aligned_cols=89 Identities=8% Similarity=0.009 Sum_probs=53.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHhhcccC--cceecCCCEEEEeCCCCCHHHHHHHHHh--cCC-CCCCeEEEeccccCCC
Q 029935 13 HLMQCKPLPEQEVNILCEQARAILVEEW--NVQPVKCPVTVCGDIHGQFHDLVELFRI--GGN-APDTNYLFMGDYVDRG 87 (185)
Q Consensus 13 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~--~~~~~~~~i~vigDIHG~~~~l~~ll~~--~~~-~~~~~lv~lGD~vdrG 87 (185)
..-+...+|+++...|.+...++..... .+.........-.|+|-+...+...+.. .+. .+....+.-|++|+.|
T Consensus 58 al~~~Giip~~~a~~I~~al~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G 137 (464)
T PRK00485 58 VNAELGLLDAEKADAIVAAADEVIAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMS 137 (464)
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHhCccccCCCcchhhccccccccccHHHHHHHHHHHhcCccccccCccCccccCCCC
Confidence 3445567999999998887777654312 1221222233567889988766654332 221 1223456679999999
Q ss_pred CCcHHHHHHHHHHH
Q 029935 88 YYSVETVTLLVALK 101 (185)
Q Consensus 88 ~~~~e~l~~l~~l~ 101 (185)
-.+..++.-...+.
T Consensus 138 ~SrnD~v~Ta~~L~ 151 (464)
T PRK00485 138 QSSNDTFPTAMHIA 151 (464)
T ss_pred CCchhHHHHHHHHH
Confidence 88877665555443
No 219
>PF11369 DUF3160: Protein of unknown function (DUF3160); InterPro: IPR022601 This group of proteins has no known function.
Probab=22.76 E-value=2.3e+02 Score=26.39 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhcc-cCcceecCCCEEEEeCCCCCH
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILVE-EWNVQPVKCPVTVCGDIHGQF 59 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~i~vigDIHG~~ 59 (185)
+.++.+.=++++.++.+|...|-.-...+-.- -..+.....+..+|.|||.+-
T Consensus 509 L~~Is~KEL~~~~LT~eey~~I~~~G~~le~~~~~~~~~~~~~~avVADV~T~~ 562 (630)
T PF11369_consen 509 LKEISEKELENEPLTDEEYEFIRSFGGTLEHILWSDVDDTDKKMAVVADVHTDP 562 (630)
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhhhcccCccccCCceEEeccccC
Confidence 44455555667889988876655443322221 233445567899999999876
No 220
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=22.58 E-value=2e+02 Score=22.29 Aligned_cols=40 Identities=10% Similarity=0.177 Sum_probs=21.3
Q ss_pred CCCeEEEeccccCC---CCCcHHHHHHHHHHHHhCCC-cEEEEcCCCch
Q 029935 73 PDTNYLFMGDYVDR---GYYSVETVTLLVALKVRYRD-RITILRGNHES 117 (185)
Q Consensus 73 ~~~~lv~lGD~vdr---G~~~~e~l~~l~~l~~~~p~-~v~~l~GNHE~ 117 (185)
+.+.+++ |+.|- |.+..+++..+ +..+|. +++++-|..+.
T Consensus 37 ~pd~vl~--dl~d~~mp~~~Gl~~~~~l---~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 37 SFSAVIF--SLSAMRSERREGLSCLTEL---AIKFPRMRRLVIADDDIE 80 (207)
T ss_pred CCCEEEe--eccccCCCCCCHHHHHHHH---HHHCCCCCEEEEeCCCCH
Confidence 3454444 77663 44555555444 445554 56777775544
No 221
>COG3433 Aryl carrier domain [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.48 E-value=54 Score=21.38 Aligned_cols=22 Identities=27% Similarity=0.452 Sum_probs=19.4
Q ss_pred cccCCCCCcHHHHHHHHHHHHh
Q 029935 82 DYVDRGYYSVETVTLLVALKVR 103 (185)
Q Consensus 82 D~vdrG~~~~e~l~~l~~l~~~ 103 (185)
|++++|-+|+.++.++..++.+
T Consensus 23 NLi~~GLDSiR~M~L~~~wR~~ 44 (74)
T COG3433 23 NLIDYGLDSIRMMALLERWRKR 44 (74)
T ss_pred hHHHhchhHHHHHHHHHHHHHc
Confidence 6889999999999999998854
No 222
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=22.41 E-value=1.2e+02 Score=21.64 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=32.0
Q ss_pred CEEEEeCCCCCHHHHHHHHHhc----------------------CCCCCCeEEEeccccCCCCCcHHHHHHHHHHH
Q 029935 48 PVTVCGDIHGQFHDLVELFRIG----------------------GNAPDTNYLFMGDYVDRGYYSVETVTLLVALK 101 (185)
Q Consensus 48 ~i~vigDIHG~~~~l~~ll~~~----------------------~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~ 101 (185)
+-++|||...--+...+.++.. ...+.+.++++|-.-+|-.+....+..+....
T Consensus 37 Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~kD~TD~e~Al~~~~~~~~~~i~v~Ga~GgR~DH~lanl~~l~~~~ 112 (123)
T PF04263_consen 37 PDLIIGDFDSISPEVLEFYKSKGVEIIHFPEKDYTDLEKALEYAIEQGPDEIIVLGALGGRFDHTLANLNLLYKYK 112 (123)
T ss_dssp -SEEEC-SSSS-HHHHHHHHHCTTEEEEE-STTS-HHHHHHHHHHHTTTSEEEEES-SSSSHHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCChHHHHHHHhhccceecccccccCHHHHHHHHHHHCCCCEEEEEecCCCcHHHHHHHHHHHHHHH
Confidence 5678888887666555544432 22334567777777777777777777766655
No 223
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.19 E-value=1.2e+02 Score=24.32 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHhhccc-CcceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 21 PEQEVNILCEQARAILVEE-WNVQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~-~~~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
|++||..|++-..+.+..+ +.+.....++-++||+..=-+.+.+.++.+
T Consensus 65 ~~~Ev~~Lm~L~~~~l~~~~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~ 114 (233)
T PRK14833 65 PKSEVDFLMKLLKKYLKDERSTYLENNIRFKAIGDLEGFSKELRDTILQL 114 (233)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEeChhhCCHHHHHHHHHH
Confidence 5889998888888777654 234445779999999987666666666443
No 224
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=22.08 E-value=3.4e+02 Score=20.26 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=37.3
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHH-HHHHhCCCcEEEEcCCCc
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLV-ALKVRYRDRITILRGNHE 116 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~-~l~~~~p~~v~~l~GNHE 116 (185)
..++.|++. +....+..+++..+....-..++.+|-+.++....+.+..+. .+. ..|.++ +.-|+..
T Consensus 101 g~~~~i~S~--~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~~~-~~~~~~-~~igDs~ 168 (213)
T TIGR01449 101 GLRLGLVTN--KPTPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAERLG-VAPQQM-VYVGDSR 168 (213)
T ss_pred CCeEEEEeC--CCHHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHHcC-CChhHe-EEeCCCH
Confidence 357888885 566777888887776443334555555554433344444443 333 234443 4456654
No 225
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=21.98 E-value=1.9e+02 Score=17.18 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhccc
Q 029935 4 QADLDRQIEHLMQCKPLPEQEVNILCEQARAILVEE 39 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 39 (185)
+..++.+++.+-++ .+|-++...+.+++.++++..
T Consensus 5 ~~~Le~Iv~~Le~~-~~sLdes~~lyeeg~~l~~~c 39 (53)
T PF02609_consen 5 MERLEEIVEKLESG-ELSLDESLKLYEEGMELIKKC 39 (53)
T ss_dssp HHHHHHHHHHHHTT--S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHH
Confidence 56788888887764 688999999999888877653
No 226
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=21.80 E-value=1.6e+02 Score=23.28 Aligned_cols=44 Identities=16% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 72 APDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 72 ~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
++.-.++.+||++-.-+....++.++..+..+ ...++-|.|=..
T Consensus 140 ~~~~Dl~LagDlfy~~~~a~~l~~~~~~l~~~---g~~vlvgdp~R~ 183 (218)
T COG3897 140 PPAFDLLLAGDLFYNHTEADRLIPWKDRLAEA---GAAVLVGDPGRA 183 (218)
T ss_pred CcceeEEEeeceecCchHHHHHHHHHHHHHhC---CCEEEEeCCCCC
Confidence 34457999999998888888888877776643 244455665543
No 227
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=21.68 E-value=40 Score=24.60 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=18.0
Q ss_pred CCCCCHHHHHHHHHhcCCC
Q 029935 54 DIHGQFHDLVELFRIGGNA 72 (185)
Q Consensus 54 DIHG~~~~l~~ll~~~~~~ 72 (185)
|+.|++..|++.|+.++++
T Consensus 1 Dl~~~l~~L~~~Lr~~~yp 19 (131)
T PF15007_consen 1 DLKGNLRRLEQELRSLKYP 19 (131)
T ss_pred ChhhHHHHHHHHHHHCCCC
Confidence 8999999999999999987
No 228
>TIGR01201 HU_rel DNA-binding protein, histone-like, putative. This model describes a set of proteins related to but longer than DNA-binding protein HU. Its distinctive domain architecture compared to HU and related histone-like DNA-binding proteins justifies the designation as superfamily. Members include, so far, one from Bacteroides fragilis, a gut bacterium, and ten from Porphyromonas gingivalis, an oral anaerobe.
Probab=21.45 E-value=1.6e+02 Score=21.65 Aligned_cols=31 Identities=13% Similarity=0.192 Sum_probs=17.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHhhc
Q 029935 7 LDRQIEHLMQCKPLPEQEVNILCEQARAILV 37 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 37 (185)
.+++++.+.+...++..++..+++...+.+.
T Consensus 33 ~~el~~~Ia~~s~~s~~dv~~vl~~l~~~i~ 63 (145)
T TIGR01201 33 FEEIAELIAEESSLSPGDVKGIIDRLAYVLR 63 (145)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4455555555555666666666655555443
No 229
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=21.41 E-value=95 Score=20.94 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=18.0
Q ss_pred CCEEEEeCCC-CCHHHHHHHHHh
Q 029935 47 CPVTVCGDIH-GQFHDLVELFRI 68 (185)
Q Consensus 47 ~~i~vigDIH-G~~~~l~~ll~~ 68 (185)
.|-++|||-| |.+++|.++-+.
T Consensus 61 vPQIFi~~~~iGg~ddl~~l~e~ 83 (92)
T cd03030 61 PPQIFNGDEYCGDYEAFFEAKEN 83 (92)
T ss_pred CCEEEECCEEeeCHHHHHHHHhC
Confidence 3678999999 999999887653
No 230
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=21.41 E-value=3.5e+02 Score=20.07 Aligned_cols=70 Identities=17% Similarity=0.295 Sum_probs=49.3
Q ss_pred cCCCEEEEeCCCCCH-HHHHHHHHhcCCCCCCeEEE-eccc---cCCCCCcHHHHHHHHHHHHhCC-CcEEEEcCCCchh
Q 029935 45 VKCPVTVCGDIHGQF-HDLVELFRIGGNAPDTNYLF-MGDY---VDRGYYSVETVTLLVALKVRYR-DRITILRGNHESR 118 (185)
Q Consensus 45 ~~~~i~vigDIHG~~-~~l~~ll~~~~~~~~~~lv~-lGD~---vdrG~~~~e~l~~l~~l~~~~p-~~v~~l~GNHE~~ 118 (185)
...++++|||=-|-- .+....++..+ ..++| .-.. ...|...+|.-..+..+..+|+ .|+++|.|.-|.-
T Consensus 5 ~gKkviiiGdRDGiPgpAie~c~k~~g----aevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGaaeaE 80 (154)
T PRK13265 5 EGKKVIIIGDRDGIPGPAIEECVKTTG----AEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGAAEAE 80 (154)
T ss_pred cCcEEEEEecCCCCCcHHHHHHHhccC----ceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecccchh
Confidence 356899999988843 45667777543 33444 2222 2468888898888988887765 4999999998864
No 231
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.33 E-value=1.3e+02 Score=24.53 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHhhcccCc-ceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 21 PEQEVNILCEQARAILVEEWN-VQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~-~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
|++||..|++-..+.+.+... +.....++-+|||+-.=-+.+...++.+
T Consensus 83 ~~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~ 132 (250)
T PRK14840 83 SKEEVAELFSLFNSQLDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQA 132 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHH
Confidence 589999888888888766433 4455779999999876556666666433
No 232
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=21.17 E-value=1.4e+02 Score=20.55 Aligned_cols=38 Identities=13% Similarity=0.065 Sum_probs=19.4
Q ss_pred CeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCc
Q 029935 75 TNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHE 116 (185)
Q Consensus 75 ~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE 116 (185)
..+||.++---.|..+...+..+ ...|.+.+++-|...
T Consensus 81 p~Vvias~gml~~G~s~~~l~~~----~~d~~n~Ii~~gy~~ 118 (126)
T PF10996_consen 81 PKVVIASSGMLEGGRSRHYLKRL----ASDPRNTIIFTGYQA 118 (126)
T ss_dssp SEEEEESSTTSSSSHHHHHHHHH----TTSTTSEEEESSS--
T ss_pred CeEEEeCCCCCCCCHHHHHHHHH----cCCCCCeEEEecCCC
Confidence 46666666433333444444322 245567777777643
No 233
>PRK05926 hypothetical protein; Provisional
Probab=20.98 E-value=4.8e+02 Score=22.33 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHH
Q 029935 4 QADLDRQIEHLMQCKPLPEQEVNILC 29 (185)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~ 29 (185)
+..++++.+.+.+++.++.+|...|+
T Consensus 12 ~~~~~~~~~kv~~g~~ls~eeal~Ll 37 (370)
T PRK05926 12 SSWLKTLFDDYLSGARLSEEDALQLL 37 (370)
T ss_pred cHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45578899999999999999988887
No 234
>PRK00955 hypothetical protein; Provisional
Probab=20.98 E-value=1.4e+02 Score=27.57 Aligned_cols=34 Identities=21% Similarity=0.312 Sum_probs=26.6
Q ss_pred HHhcCCCCCCeEEEecc-ccCCCCCcHHHHHHHHH
Q 029935 66 FRIGGNAPDTNYLFMGD-YVDRGYYSVETVTLLVA 99 (185)
Q Consensus 66 l~~~~~~~~~~lv~lGD-~vdrG~~~~e~l~~l~~ 99 (185)
++..++...|.+++.|| |||--+...+++-.+.+
T Consensus 6 ~~~~gw~~~d~i~v~gdayvdhp~fg~a~i~r~L~ 40 (620)
T PRK00955 6 MKKRGWDELDFILVTGDAYVDHPSFGTAIIGRVLE 40 (620)
T ss_pred HHHcCCCccCEEEEeCcccccCCccHHHHHHHHHH
Confidence 45677888888888999 88888888887776654
No 235
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=20.90 E-value=2.5e+02 Score=18.59 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=20.9
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHhh
Q 029935 7 LDRQIEHLMQ-CKPLPEQEVNILCEQARAIL 36 (185)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l 36 (185)
.+++++.+.. ...++..++..+++...+.+
T Consensus 3 k~eli~~i~~~~~~~s~~~v~~vv~~~~~~i 33 (94)
T TIGR00988 3 KSELIERIATQQSHLPAKDVEDAVKTMLEHM 33 (94)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5677888875 44688888877776665554
No 236
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=20.57 E-value=2.8e+02 Score=23.27 Aligned_cols=39 Identities=5% Similarity=0.005 Sum_probs=28.5
Q ss_pred CCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCe-EEEecccc
Q 029935 46 KCPVTVCGDIHG-QFHDLVELFRIGGNAPDTN-YLFMGDYV 84 (185)
Q Consensus 46 ~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~-lv~lGD~v 84 (185)
..||+||-+.+. +..+-.++|+.++.++... +|++.+-.
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~ 153 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQP 153 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECCh
Confidence 468999999986 5566778888888877664 55566533
No 237
>PF01746 tRNA_m1G_MT: tRNA (Guanine-1)-methyltransferase; InterPro: IPR016009 In transfer RNA many different modified nucleosides are found, especially in the anticodon region. tRNA (guanine-N1-)-methyltransferase 2.1.1.31 from EC is one of several nucleases operating together with the tRNA-modifying enzymes before the formation of the mature tRNA. It catalyses the reaction: S-adenosyl-L-methionine + tRNA -> S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine methylating guanosine(G) to N1-methylguanine (1-methylguanosine (m1G)) at position 37 of tRNAs that read CUN (leucine), CCN(proline), and CGG (arginine) codons. The presence of m1G improves the cellular growth rate and the polypeptide steptime and also prevents the tRNA from shifting the reading frame []. The mechanism of the trmD3-induced frameshift involving mutant tRNA(Pro) and tRNA(Leu) species has been investigated []. It has been suggested that the conformation of the anticodon loop may be a major determining element for the formation of m1G37 in vivo []. ; PDB: 3IEF_A 3KY7_A 1UAL_A 3AXZ_A 1UAM_A 1UAK_A 1UAJ_A 1OY5_B 3KNU_B 3QUV_A ....
Probab=20.54 E-value=1.1e+02 Score=23.16 Aligned_cols=36 Identities=19% Similarity=0.162 Sum_probs=21.0
Q ss_pred EEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHH
Q 029935 49 VTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVE 92 (185)
Q Consensus 49 i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e 92 (185)
|++.||-=|-.+.+..-- +.++.+|++||+|..-..
T Consensus 83 VyLs~d~e~~le~~~~~~--------~~vyiIGgiVD~~~~k~~ 118 (186)
T PF01746_consen 83 VYLSPDSEGVLERVDPDK--------DDVYIIGGIVDRNGEKGA 118 (186)
T ss_dssp EEEE-BTT-BBHHHHHHH--------TSEEESSSS--SCSHHHH
T ss_pred EEEECCcccccccccccc--------ceEEEEccEEccCCcccc
Confidence 677787776655544221 128889999999886555
No 238
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=20.39 E-value=3.6e+02 Score=22.67 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHHHHHhhcccCcceecCCCEEEEeCCCC-CHHHHHHHHHhcCCCCCCeEEE-ecc
Q 029935 19 PLPEQEVNILCEQARAILVEEWNVQPVKCPVTVCGDIHG-QFHDLVELFRIGGNAPDTNYLF-MGD 82 (185)
Q Consensus 19 ~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~i~vigDIHG-~~~~l~~ll~~~~~~~~~~lv~-lGD 82 (185)
.+.-++++.+.+.+.. .| ..-..||++|-+.+- +..+-.++|+.++.+|...+++ +-+
T Consensus 87 ~I~idqiR~l~~~~~~----~~--~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 87 SLGVDAVREVTEKLYE----HA--RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred cCCHHHHHHHHHHHhh----cc--ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 3666677766654332 22 223568999999886 5566778899999888775555 444
No 239
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=20.33 E-value=3.4e+02 Score=21.04 Aligned_cols=64 Identities=8% Similarity=-0.030 Sum_probs=35.1
Q ss_pred CCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEE
Q 029935 46 KCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITIL 111 (185)
Q Consensus 46 ~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l 111 (185)
..++++++. |........++..+..+.-..++.+|-+.++.-..+.+..+.+.....|.+++++
T Consensus 109 g~~~~i~Tn--~~~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~l~i 172 (224)
T PRK14988 109 GKRRILLTN--AHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEHTGLKAERTLFI 172 (224)
T ss_pred CCeEEEEeC--cCHHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHHcCCChHHEEEE
Confidence 347888887 5566666667766654432345555545544444556655544332344455444
No 240
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=20.29 E-value=5.9e+02 Score=22.27 Aligned_cols=68 Identities=13% Similarity=0.210 Sum_probs=38.3
Q ss_pred cCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeEEEeccccCCCCCcHHHHHHHHHHHHhCCCcEEEEcCCCchh
Q 029935 45 VKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESR 118 (185)
Q Consensus 45 ~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~lv~lGD~vdrG~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~ 118 (185)
...|+.|..=+--..+.++++-+.++ ...|.+++ |..+ +++..+++++..++..+|+ +.++.||=-..
T Consensus 138 ~~~~l~v~aavg~~~~~~~~v~~lv~-aGvDvI~i--D~a~--g~~~~~~~~v~~ik~~~p~-~~vi~g~V~T~ 205 (404)
T PRK06843 138 LNNKLRVGAAVSIDIDTIERVEELVK-AHVDILVI--DSAH--GHSTRIIELVKKIKTKYPN-LDLIAGNIVTK 205 (404)
T ss_pred hhcCeEEEEEEeCCHHHHHHHHHHHh-cCCCEEEE--ECCC--CCChhHHHHHHHHHhhCCC-CcEEEEecCCH
Confidence 35566654444323443443333222 23444444 5544 4477888888888888874 55777776554
No 241
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.27 E-value=1.4e+02 Score=24.17 Aligned_cols=49 Identities=6% Similarity=0.125 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHHHHhhcccCc-ceecCCCEEEEeCCCCCHHHHHHHHHhc
Q 029935 21 PEQEVNILCEQARAILVEEWN-VQPVKCPVTVCGDIHGQFHDLVELFRIG 69 (185)
Q Consensus 21 ~~~~~~~l~~~~~~~l~~~~~-~~~~~~~i~vigDIHG~~~~l~~ll~~~ 69 (185)
|++||..|++...+.+...-. +.....++-+|||+-.=-+.+.+.++.+
T Consensus 69 ~~~EV~~Lm~L~~~~l~~~~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~ 118 (241)
T PRK14842 69 PITEIRSIFGLLVEFIETRLDTIHARGIRIHHSGSRKKLTRTVLDKIDFA 118 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHH
Confidence 688998888888887766422 3445678999999986666666655433
No 242
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=20.16 E-value=69 Score=20.41 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=8.7
Q ss_pred CcEEEEecCCC
Q 029935 158 SQVFCLHGGLS 168 (185)
Q Consensus 158 ~~~l~vHaGi~ 168 (185)
+.+++||+|..
T Consensus 41 Gd~VLVHaG~A 51 (68)
T PF01455_consen 41 GDYVLVHAGFA 51 (68)
T ss_dssp T-EEEEETTEE
T ss_pred CCEEEEecChh
Confidence 78999999974
No 243
>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]
Probab=20.02 E-value=5.7e+02 Score=22.00 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=61.3
Q ss_pred ChhHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHhhcccCc-ceecCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCeE
Q 029935 3 SQADLDRQIEHLMQCKPLPEQEVNILCEQA----RAILVEEWN-VQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNY 77 (185)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~l~~~~~-~~~~~~~i~vigDIHG~~~~l~~ll~~~~~~~~~~l 77 (185)
+.. ++.+++.+.+++.++.++...|++.+ ...++.... .......+.++-+.+=+++.+-. . .+
T Consensus 5 ~~~-~~~~~e~a~~~~~l~~~d~~~Ll~~~~~~~l~~~A~~~r~~~~~~~~vtyv~n~~in~TN~C~--~--------~C 73 (370)
T COG1060 5 ARD-VDEIVEKALNGERLTREDALALLSPADLEELEELADKARRRKRVGDGVTYVVNRNINYTNICV--N--------DC 73 (370)
T ss_pred hhH-HHHHHHHHhccCCCCHHHHHHHhccCcHHHHHHHHHHHHHhhccCCcEEEEEeecCCcchhhc--C--------CC
Confidence 335 89999999999999999999888744 111222222 22233346666666655554321 1 12
Q ss_pred EEeccccCC------CCCcHHHHHHHHHHHHhCCCcEEEEcCCCchhhhh
Q 029935 78 LFMGDYVDR------GYYSVETVTLLVALKVRYRDRITILRGNHESRQIT 121 (185)
Q Consensus 78 v~lGD~vdr------G~~~~e~l~~l~~l~~~~p~~v~~l~GNHE~~~~~ 121 (185)
.|+|=+.+. --.+.++.+.+.+....--..++++-|-|-...+.
T Consensus 74 ~fCaF~~~~~~~~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~ 123 (370)
T COG1060 74 TFCAFYRKPGDPKAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE 123 (370)
T ss_pred CccccccCCCCccccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH
Confidence 222222222 12355667777766654334677888877665443
Done!