Query 029936
Match_columns 185
No_of_seqs 115 out of 1621
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15196 secreted effector pro 99.9 3.7E-23 8E-28 172.7 2.0 56 109-164 245-300 (350)
2 PRK09718 hypothetical protein; 99.8 4.6E-22 1E-26 168.5 1.3 142 25-184 92-236 (512)
3 PRK15196 secreted effector pro 99.8 1.5E-21 3.4E-26 163.0 4.3 57 111-167 257-313 (350)
4 PRK09718 hypothetical protein; 99.8 1.3E-20 2.8E-25 159.8 2.3 146 20-173 97-245 (512)
5 KOG1665 AFH1-interacting prote 99.8 1.6E-19 3.5E-24 139.3 3.3 135 35-182 153-287 (302)
6 KOG1665 AFH1-interacting prote 99.7 7.3E-19 1.6E-23 135.7 2.2 147 23-182 131-282 (302)
7 PRK15197 secreted effector pro 99.7 4.5E-18 9.7E-23 138.2 4.5 35 25-59 156-190 (291)
8 COG1357 Pentapeptide repeats c 99.7 1.1E-17 2.4E-22 132.5 2.2 35 25-59 56-91 (238)
9 PRK15377 E3 ubiquitin-protein 99.6 2.1E-16 4.5E-21 140.5 5.3 43 17-59 174-216 (782)
10 PRK15377 E3 ubiquitin-protein 99.6 2.6E-16 5.6E-21 139.9 5.3 29 31-59 178-206 (782)
11 PF13599 Pentapeptide_4: Penta 99.3 3.2E-12 6.9E-17 84.4 5.4 71 99-172 6-77 (78)
12 PF13599 Pentapeptide_4: Penta 99.3 2.8E-12 6.1E-17 84.6 3.5 73 109-182 4-77 (78)
13 PF01696 Adeno_E1B_55K: Adenov 29.8 34 0.00074 29.5 1.7 18 30-47 120-138 (386)
14 PRK09716 hypothetical protein; 26.0 37 0.0008 27.3 1.2 48 111-158 151-198 (395)
No 1
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.86 E-value=3.7e-23 Score=172.71 Aligned_cols=56 Identities=20% Similarity=0.285 Sum_probs=22.8
Q ss_pred ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEc
Q 029936 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164 (185)
Q Consensus 109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~ 164 (185)
.+++|.+++|++++|.+|+|.+++|.+|+|++++|.+++|.+++|.+++|.+++|.
T Consensus 245 ~~anL~gAnL~~a~f~~a~L~~anfs~A~L~~a~f~~a~L~~A~f~~A~L~~Adf~ 300 (350)
T PRK15196 245 IECNCSGANMDHTNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFI 300 (350)
T ss_pred ccccccccccccccccccccccCccccccccccccccceecccccceeeccccEee
Confidence 33444444444444444444444444444444433333333333333333333333
No 2
>PRK09718 hypothetical protein; Validated
Probab=99.84 E-value=4.6e-22 Score=168.49 Aligned_cols=142 Identities=11% Similarity=0.086 Sum_probs=101.6
Q ss_pred cccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCc
Q 029936 25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGE 104 (185)
Q Consensus 25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (185)
+.+.+|++|+|.+|+|++++|.+++|.+|.|+.+. +..+.|.++.+.++ .+..+.+.++.|.+|
T Consensus 92 fs~ldFegCdFsgCdFS~csFs~~dLqDV~FEcA~---Lg~CNFsgAdLsgA-------------~FarA~L~rvsFinC 155 (512)
T PRK09718 92 LSDLDLTSCHFKGDVISKVSFLSSNLQHVTFECKE---IGDCNFTTAIVDNV-------------IFKCRRLHNVIFIKA 155 (512)
T ss_pred eccCEEcccEecCCEEeeceecCCEEEeEEEeccc---cCccccccCCCCCC-------------ccccceecceEEEec
Confidence 56666666666666666666666666666665555 44444444444333 255666677777777
Q ss_pred ccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCcee---eCcEEcCCccCCCcccCeEeeee
Q 029936 105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA---YKANFTGADLSDTLMDRMVKLVT 181 (185)
Q Consensus 105 ~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l---~~a~l~~a~l~~a~~~~~~l~~~ 181 (185)
++ .|++|+++.|+++.|.+|.|.+++|.+++|+++.|.+|+|.+++|.+++| +++.|.+++|++++|.++.|+++
T Consensus 156 KL--sGAdFSgA~Lk~V~FsdCnL~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgV 233 (512)
T PRK09718 156 SG--EYVDFSKNILDTVDFSQSQLTHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTG 233 (512)
T ss_pred cc--cCcccccCccCCcEEeeeEecccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCc
Confidence 77 77888888888888888888888888888888888888888888888887 67888888888888888777777
Q ss_pred ecC
Q 029936 182 TTN 184 (185)
Q Consensus 182 ~~~ 184 (185)
+..
T Consensus 234 DFS 236 (512)
T PRK09718 234 NFK 236 (512)
T ss_pred ccc
Confidence 653
No 3
>PRK15196 secreted effector protein PipB2; Provisional
Probab=99.83 E-value=1.5e-21 Score=162.99 Aligned_cols=57 Identities=16% Similarity=0.147 Sum_probs=21.2
Q ss_pred ceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCc
Q 029936 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGAD 167 (185)
Q Consensus 111 ~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~ 167 (185)
++|.+++|.+++|.+++|++++|.+++|++++|.+++|.+++|.+++|.+++|.+++
T Consensus 257 a~f~~a~L~~anfs~A~L~~a~f~~a~L~~A~f~~A~L~~Adf~~a~L~gadfs~A~ 313 (350)
T PRK15196 257 TNLSGATLIRADMSGATLQGATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEAN 313 (350)
T ss_pred ccccccccccCccccccccccccccceecccccceeeccccEeeCCEecCCCCCCCc
Confidence 333333333333333333333333333333333333333333333333333333333
No 4
>PRK09718 hypothetical protein; Validated
Probab=99.80 E-value=1.3e-20 Score=159.79 Aligned_cols=146 Identities=10% Similarity=0.099 Sum_probs=76.9
Q ss_pred CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029936 20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA 99 (185)
Q Consensus 20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
+.+..|++++|++|.|.+|+|.++.|.++.|.+|.|.+++ +.+++|.++.+..+.|..+... ...|.++.+.++
T Consensus 97 FegCdFsgCdFS~csFs~~dLqDV~FEcA~Lg~CNFsgAd---LsgA~FarA~L~rvsFinCKLs---GAdFSgA~Lk~V 170 (512)
T PRK09718 97 LTSCHFKGDVISKVSFLSSNLQHVTFECKEIGDCNFTTAI---VDNVIFKCRRLHNVIFIKASGE---YVDFSKNILDTV 170 (512)
T ss_pred EcccEecCCEEeeceecCCEEEeEEEeccccCccccccCC---CCCCccccceecceEEEecccc---CcccccCccCCc
Confidence 3444455555555555555555555555555555555555 4444455555544444433311 222444444444
Q ss_pred cccCcccccccceeccceecccccccccccCceecccee---cCeeecCceecCceeeCceeeCcEEcCCccCCCcc
Q 029936 100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADM---RESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLM 173 (185)
Q Consensus 100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l---~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~ 173 (185)
.+.++.+ .+++|.+++|+++.|.+|+|.++.|.+|+| +++.|.+++|.+|+|.+++|+++||+.|++.+.++
T Consensus 171 ~FsdCnL--~yAnFsgAnLskA~F~gCDLseAdFSEcdLS~aKka~F~~cDLt~AdF~qT~LkgVDFSdC~Le~~~~ 245 (512)
T PRK09718 171 DFSQSQL--THSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKEISFIKSNLTAVMFDHVRISTGNFKDCITEQLEL 245 (512)
T ss_pred EEeeeEe--cccCCCCCcCCCCEEeCccCCcCCccCCccCCCCCCEEeCCCCCCCCcCCCcCCCcccccccccceEE
Confidence 5555555 555566666666666666666666666665 45555555555555555555555555555555443
No 5
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.77 E-value=1.6e-19 Score=139.31 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=86.4
Q ss_pred ecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCcccccccceec
Q 029936 35 WVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFG 114 (185)
Q Consensus 35 f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 114 (185)
|.-+.++++.|+++++.-|.|+.+| +++..+.-+.+.++.+.-.. ..++.+.+++|..... ..+++.
T Consensus 153 FkyA~ls~c~lshtNL~ca~lerAD---l~gsil~cA~L~~v~~lcaN--------~eGA~L~gcNfedps~--~kaNLe 219 (302)
T KOG1665|consen 153 FKYANLSNCNLSHTNLQCAKLERAD---LEGSILHCAILREVEMLCAN--------AEGASLKGCNFEDPSG--LKANLE 219 (302)
T ss_pred ceehhhccccccccchhhhhhcccc---cccchhhhhhhhhhhheecc--------cccccccCcCCCCccc--hhcccc
Confidence 3333334444444444444444444 44444444444444443221 3334444444444333 567888
Q ss_pred cceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029936 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT 182 (185)
Q Consensus 115 ~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~ 182 (185)
+++|.+++|.++++++++++-|+|+++++.+++|.+|++.+++|.++||+|+||..|.+++++++++-
T Consensus 220 ganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAnLRg~Nlk~A~ 287 (302)
T KOG1665|consen 220 GANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEANLRGVNLKEAH 287 (302)
T ss_pred ccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhhcccCchhhHH
Confidence 88888888888888888888888888888888888888888888888888888888888888887763
No 6
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=99.73 E-value=7.3e-19 Score=135.73 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=93.5
Q ss_pred CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029936 23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR 102 (185)
Q Consensus 23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (185)
-.|+|.+|.+..+..-+|...+|.-+.+.+|.|.+.. +..+.+.++.+.+..+.-.. +..+.+.-++.+
T Consensus 131 lRfqGvNlSGaDLskLDlr~inFkyA~ls~c~lshtN---L~ca~lerADl~gsil~cA~--------L~~v~~lcaN~e 199 (302)
T KOG1665|consen 131 LRFQGVNLSGADLSKLDLRLINFKYANLSNCNLSHTN---LQCAKLERADLEGSILHCAI--------LREVEMLCANAE 199 (302)
T ss_pred eeeecccccccchhhcccccccceehhhccccccccc---hhhhhhcccccccchhhhhh--------hhhhhheecccc
Confidence 3466666666666666666666666666666666666 55555665555555444322 444444445555
Q ss_pred Ccccccccceecc-----ceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeE
Q 029936 103 GEFGIGSAAQFGS-----ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177 (185)
Q Consensus 103 ~~~~~~~~~~f~~-----a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~ 177 (185)
++.+ .+++|.. ++|+++.+.+|+|-++++++++|+.|++.++++.++++++|+|.|++|+.|||+++++..+.
T Consensus 200 GA~L--~gcNfedps~~kaNLeganLkG~~~egs~m~ginLrvA~Lknanle~~NLrgA~LaGadLencnlsG~dLQeAn 277 (302)
T KOG1665|consen 200 GASL--KGCNFEDPSGLKANLEGANLKGADMEGSQMTGINLRVATLKNANLENCNLRGANLAGADLENCNLSGADLQEAN 277 (302)
T ss_pred cccc--cCcCCCCccchhccccccccccccccccccccceeEeccccccccccCccccccccCCccccCCCCCcchhHhh
Confidence 5555 5566666 66666666666666666666777777777777777777777777777777777777777777
Q ss_pred eeeee
Q 029936 178 KLVTT 182 (185)
Q Consensus 178 l~~~~ 182 (185)
|+++.
T Consensus 278 LRg~N 282 (302)
T KOG1665|consen 278 LRGVN 282 (302)
T ss_pred cccCc
Confidence 76653
No 7
>PRK15197 secreted effector protein PipB; Provisional
Probab=99.71 E-value=4.5e-18 Score=138.22 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=12.8
Q ss_pred cccccccCceecceeccCCCCCCcccCCcccccCC
Q 029936 25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCA 59 (185)
Q Consensus 25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~ 59 (185)
+.+++|.+..|.+.+|.+++|.+++|.++.|.+|+
T Consensus 156 L~g~DLs~adL~gadLsgadLs~A~F~gAnL~~a~ 190 (291)
T PRK15197 156 LRGVNLAHKDFQGEDLSDIDASNADFRETTLSNVN 190 (291)
T ss_pred CCCCCCCCCCCCCCcCCCCcccCccccccCcCCcc
Confidence 33333333333333333333333333333333333
No 8
>COG1357 Pentapeptide repeats containing protein [Function unknown]
Probab=99.68 E-value=1.1e-17 Score=132.48 Aligned_cols=35 Identities=9% Similarity=-0.003 Sum_probs=14.9
Q ss_pred cccccccCceecceeccCCCCC-CcccCCcccccCC
Q 029936 25 YQLHALSKPLWVACQISSKTES-DGQFPDCSNNQCA 59 (185)
Q Consensus 25 ~~~a~l~~~~f~~c~~~~~~f~-~a~l~~~~F~~c~ 59 (185)
+.++.+.++.|..++|.+++|. +++|.++.|.++.
T Consensus 56 ~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~l~~~~ 91 (238)
T COG1357 56 LSGANLSGADLSNANLRGADLSKGADLSGADLEGAN 91 (238)
T ss_pred ccccccccchhhhcccccchhccCCCCCCCcccccc
Confidence 4444444444444444444444 4444444444444
No 9
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.63 E-value=2.1e-16 Score=140.48 Aligned_cols=43 Identities=7% Similarity=0.019 Sum_probs=24.8
Q ss_pred ccCCCCCCcccccccCceecceeccCCCCCCcccCCcccccCC
Q 029936 17 CSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCA 59 (185)
Q Consensus 17 ~~~~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~ 59 (185)
.+..+.++|+++.++++.|.+|+|.+++|.+++|.++.|.++.
T Consensus 174 a~~Ls~Adl~~A~Le~vdFsg~DLSGADFsg~DLSgAnFsgA~ 216 (782)
T PRK15377 174 AKKLTDARLRQEAGEELTYADRDFSNADFRNINFSKINPSGFM 216 (782)
T ss_pred ccccccCccccCcCccCCcCCCcCCCCCCCCCcccCCcchhhc
Confidence 3445555556666666666666666666655555555555555
No 10
>PRK15377 E3 ubiquitin-protein ligase SopA; Provisional
Probab=99.63 E-value=2.6e-16 Score=139.85 Aligned_cols=29 Identities=10% Similarity=0.007 Sum_probs=13.0
Q ss_pred cCceecceeccCCCCCCcccCCcccccCC
Q 029936 31 SKPLWVACQISSKTESDGQFPDCSNNQCA 59 (185)
Q Consensus 31 ~~~~f~~c~~~~~~f~~a~l~~~~F~~c~ 59 (185)
.++.|.+..+++++|.+++|.+++|.+|+
T Consensus 178 s~Adl~~A~Le~vdFsg~DLSGADFsg~D 206 (782)
T PRK15377 178 TDARLRQEAGEELTYADRDFSNADFRNIN 206 (782)
T ss_pred ccCccccCcCccCCcCCCcCCCCCCCCCc
Confidence 33344444444444444444444444444
No 11
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.32 E-value=3.2e-12 Score=84.37 Aligned_cols=71 Identities=24% Similarity=0.394 Sum_probs=34.7
Q ss_pred ccccCcccccccceeccceecccccccccc-cCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCc
Q 029936 99 AETRGEFGIGSAAQFGSADLRKAVHVKENF-RRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 172 (185)
Q Consensus 99 ~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l-~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~ 172 (185)
+.+.++.+ .+++|.++.++++.|.+|+| .++.|.++.|.++.|.+++|.++.|.+++|.+++|++ +|.+++
T Consensus 6 ~~f~~~~l--~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~ 77 (78)
T PF13599_consen 6 CSFSGCNL--SGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN 77 (78)
T ss_dssp EEEESCBC--TTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred EEEECCCC--CCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence 33444444 44555555555555555554 5555555555555555555555555555555555544 444443
No 12
>PF13599 Pentapeptide_4: Pentapeptide repeats (9 copies); PDB: 2XTY_A 2XTW_C 2XTX_B 3PSS_B 3PSZ_B 3NB2_B 3NAW_B 3SQV_A 2W7Z_B 2XT2_A ....
Probab=99.28 E-value=2.8e-12 Score=84.63 Aligned_cols=73 Identities=19% Similarity=0.360 Sum_probs=58.3
Q ss_pred ccceeccceecccccccccccCceecccee-cCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029936 109 SAAQFGSADLRKAVHVKENFRRANFTSADM-RESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT 182 (185)
Q Consensus 109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l-~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~ 182 (185)
.++.|.+++|.++.|.++.++++.|.+++| .++.|.++.|.+++|.++++++++|.+++|.++.|++ +|+++.
T Consensus 4 ~~~~f~~~~l~~~~f~~~~~~~~~f~~~~~~~~~~f~~~~l~~~~f~~~~l~~~~f~~~~l~~~~f~~-~l~~~~ 77 (78)
T PF13599_consen 4 ENCSFSGCNLSGANFSGSNFKNCNFSNCNFFKEANFSNCQLDNSDFSNCDLKRASFSNCDLDNCDFSG-NLKGCN 77 (78)
T ss_dssp ESEEEESCBCTTSBETTEEEESEBEETTBTTTTEBETTEBETTEBETTSBETTEEETTEB-TTEEETS-BCTTCB
T ss_pred EEEEEECCCCCCCEeECCEEECcEEECCccccCCeEECCCCCCCEEEeCEEeCCEEecCCccCCEeEe-EcCCCc
Confidence 567778888888888888888888888887 8888888888888888888888888888888888876 776653
No 13
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=29.81 E-value=34 Score=29.46 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=12.4
Q ss_pred ccCceecceeccCCC-CCC
Q 029936 30 LSKPLWVACQISSKT-ESD 47 (185)
Q Consensus 30 l~~~~f~~c~~~~~~-f~~ 47 (185)
+.+++|.++.|++-+ +.+
T Consensus 120 M~~VtF~ni~F~~~~~~~g 138 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSG 138 (386)
T ss_pred eeeeEEEEEEEecCCccce
Confidence 467777777777777 443
No 14
>PRK09716 hypothetical protein; Provisional
Probab=26.02 E-value=37 Score=27.32 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=24.3
Q ss_pred ceeccceecccccccccccCceeccceecCeeecCceecCceeeCcee
Q 029936 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVA 158 (185)
Q Consensus 111 ~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l 158 (185)
++++..+|+++.++--+|+.-.+.++-|..-.+..++|.+|+.-++++
T Consensus 151 vdlssldlrni~l~~ydftdkhman~ilnpfkl~~t~ftnanmfqvnf 198 (395)
T PRK09716 151 VDLSSLDLRNVDLDYYDFTDKHMANTILNPFKLNSTNFTNANMFQVNF 198 (395)
T ss_pred eecccccccccceeecccchHhHHhhccCceecCCCCCcccceEEEEE
Confidence 455555555555555555555555555554444444444444444333
Done!