BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029937
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IOF|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOF|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|2DF5|A Chain A, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|B Chain B, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|C Chain C, Crystal Structure Of Pf-Pcp(1-204)-C
pdb|2DF5|D Chain D, Crystal Structure Of Pf-Pcp(1-204)-C
Length = 213
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1X12|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X12|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192d)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|2EO8|A Chain A, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|B Chain B, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|C Chain C, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
pdb|2EO8|D Chain D, Crystal Structure Of A Mutant Pyrrolidone Carboxyl
Peptidase (A199p) From P. Furiosus
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1IOI|A Chain A, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|B Chain B, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|C Chain C, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
pdb|1IOI|D Chain D, X-Ray Crystalline Structures Of Pyrrolidone Carboxyl
Peptidase From A Hyperthermophile, Pyrococcus Furiosus,
And Its Cys-Free Mutant
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1Z8W|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8W|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192i)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1Z8X|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8X|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192v)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1Z8T|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1Z8T|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192q)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1X10|A Chain A, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|B Chain B, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|C Chain C, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
pdb|1X10|D Chain D, Structure Of Mutant Pyrrolidone Carboxyl Peptidase (E192a)
From A Hyperthermophile, Pyrococcus Furiosus
Length = 208
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 47 VTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQS 106
VTGF+ F G NPTE I +L G+ +G + G V P+
Sbjct: 5 VTGFEPFGGEKINPTERIAKDL----------DGIKIGDAQVF-----GRVLPVVFGKAK 49
Query: 107 AINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPA 165
+ EK E I +H G+ G + +IE+ AVN R PD G K + PI P
Sbjct: 50 EVLEKTLEEIKPD--IAIHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPG 106
>pdb|1IU8|A Chain A, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
pdb|1IU8|B Chain B, The X-Ray Crystal Structure Of Pyrrolidone-Carboxylate
Peptidase From Hyperthermophilic Archaeon Pyrococcus
Horikoshii
Length = 206
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 20/118 (16%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
I +TGF+ F G +NPT IV L E + + ++G IL + A L + L
Sbjct: 3 ILLTGFEPFGGDDKNPTMDIVEALSERIPE-------VVGE--ILPVSFKRAREKLLKVL 53
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
+ R I ++ G+ G T ++E+ AVN R PD G +P+ PI
Sbjct: 54 D-----------DVRPDITINLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPI 100
>pdb|1A2Z|A Chain A, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|B Chain B, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|C Chain C, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
pdb|1A2Z|D Chain D, Pyrrolidone Carboxyl Peptidase From Thermococcus Litoralis
Length = 220
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTL 104
+ +TGF+ F G S+NPTE I +Y +K + ++ G +L + A L + L
Sbjct: 4 VLITGFEPFGGDSKNPTEQIA----KYFDRKQIGNAMVYG--RVLPVSVKRATIELKRYL 57
Query: 105 QSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKP 157
+ E I ++ G+ + +E+ AVN R PD G++P
Sbjct: 58 EEIKPE-----------IVINLGLAPTYSNITVERIAVNIIDARIPDNDGYQP 99
>pdb|2EBJ|A Chain A, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
pdb|2EBJ|B Chain B, Crystal Structure Of Pyrrolidone Carboxyl Peptidase From
Thermus Thermophilus
Length = 192
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 21/121 (17%)
Query: 45 IHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPL-YQT 103
I VTGF+ F + NP++ ++ L + K + K AV P+ +
Sbjct: 2 ILVTGFEPFGSLEHNPSQALLDLLPSEVDGKPLRK----------------AVLPVDAEA 45
Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
L A+ + E + +H G+ +E+ AVN F PD G + +PI
Sbjct: 46 LGEALEDLHREGPKA----VLHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIV 101
Query: 164 P 164
P
Sbjct: 102 P 102
>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
pdb|1GV0|B Chain B, Structural Basis For Thermophilic Protein Stability:
Structures Of Thermophilic And Mesophilic Malate
Dehydrogenases
Length = 310
Score = 28.5 bits (62), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 46 HVTGFKKFHGVSENPTETIVSNLREYM-----KKKGMPKGLILGSCNILETA 92
VTG H S+NP +VSN + M +K G+PK ++G +L++A
Sbjct: 100 EVTGRIMEH--SKNPIIVVVSNPLDIMTHVAWQKSGLPKERVIGMAGVLDSA 149
>pdb|1N3B|A Chain A, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|B Chain B, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
pdb|1N3B|C Chain C, Crystal Structure Of Dephosphocoenzyme A Kinase From
Escherichia Coli
Length = 216
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 68 LREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINE-KDSESANSRRIIWVHF 126
+R ++K G P+ N L A+ + +Q A+ E D N I +H
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60
Query: 127 GVNSGATRFAIEQQAVNEATFRCPDEMGWKP 157
+ GA ++ A PD GW P
Sbjct: 61 AI-CGANYSIVDFLITAGANVNSPDSHGWTP 90
>pdb|1T3H|A Chain A, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|B Chain B, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
pdb|1T3H|C Chain C, X-Ray Structure Of Dephospho-Coa Kinase From E. Coli
Norteast Structural Genomics Consortium Target Er57
Length = 214
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 53 HFGANXIAADGTLQRRALRERIFANPEEKNW 83
>pdb|1VHL|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHL|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Adenosine-5'- Diphosphate
pdb|1VHT|A Chain A, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|B Chain B, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VHT|C Chain C, Crystal Structure Of Dephospho-Coa Kinase With
Bis(Adenosine)-5'-Triphosphate
pdb|1VIY|A Chain A, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|B Chain B, Crystal Structure Of Dephospho-Coa Kinase
pdb|1VIY|C Chain C, Crystal Structure Of Dephospho-Coa Kinase
Length = 218
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 125 HFGVNSGATRFAIEQQAVNEATFRCPDEMGW 155
HFG N A ++++A+ E F P+E W
Sbjct: 55 HFGANMIAADGTLQRRALRERIFANPEEKNW 85
>pdb|4HPS|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
pdb|4HPS|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004 In Space Group P21
Length = 228
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADG 167
+ G G T +E+ A+N R PD G +P P+ DG
Sbjct: 88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVI-VDG 130
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 27.7 bits (60), Expect = 3.7, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 46 HVTGFKKF--HGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
+V GF++ + EN T ++ L MKK +L S LE AG +
Sbjct: 665 NVEGFERLICNQKKENETRVVLCELGNPMKKNAQIGIAMLVSVGNLEEAGESV------S 718
Query: 104 LQSAINEKDSESANSRRII 122
Q I K+S++ NS+ ++
Sbjct: 719 FQLQIRSKNSQNPNSKIVL 737
>pdb|4GXH|A Chain A, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|B Chain B, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|C Chain C, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
pdb|4GXH|D Chain D, Crystal Structure Of A Pyrrolidone-Carboxylate Peptidase 1
(Target Id Nysgrc-012831) From Xenorhabdus Bovienii
Ss-2004
Length = 216
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIF 163
+ G G T +E+ A+N R PD G +P P+
Sbjct: 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVI 106
>pdb|3LAC|A Chain A, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
pdb|3LAC|B Chain B, Crystal Structure Of Bacillus Anthracis
Pyrrolidone-Carboxylate Peptidase, Pcp
Length = 215
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 44/119 (36%), Gaps = 17/119 (14%)
Query: 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQT 103
T+ +TGF F G S NP + +L E +G I+ V ++
Sbjct: 3 TVLLTGFDPFGGESINPAWEVAKSLHEKT----------IGEYKIISK----QVPTVFHK 48
Query: 104 LQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI 162
S + E E A I G G IE+ A+N R D G +P VP+
Sbjct: 49 SISVLKEYIEELAPEFIIC---IGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPV 104
>pdb|1RRA|A Chain A, Ribonuclease A From Rattus Norvegicus (Common Rat)
Length = 124
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 50 FKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGH 94
FK+ H +E P+++ + + MK++GM K GSC + T H
Sbjct: 8 FKRQHMDTEGPSKSSPTYCNQMMKRQGMTK----GSCKPVNTFVH 48
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query: 24 LPYFISRQLF-------VMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKG 76
LP ++R+L +M + GP T+ VTG + TE + L +Y K
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGI--------HVTEEV---LDQY---KS 318
Query: 77 MPKGLILGSCNILETAGHGAVAP 99
+P G C +L G +AP
Sbjct: 319 LPVGYCKSDCRLLIMKEDGTIAP 341
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 21/83 (25%)
Query: 24 LPYFISRQLF-------VMGSEGPPAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKG 76
LP ++R+L +M + GP T+ VTG + TE + L +Y K
Sbjct: 273 LPNEVARKLIERFPKATIMNTYGPTEATVAVTGI--------HVTEEV---LDQY---KS 318
Query: 77 MPKGLILGSCNILETAGHGAVAP 99
+P G C +L G +AP
Sbjct: 319 LPVGYCKSDCRLLIMKEDGTIAP 341
>pdb|1L5X|A Chain A, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
pdb|1L5X|B Chain B, The 2.0-Angstrom Resolution Crystal Structure Of A
Survival Protein E (Sure) Homolog From Pyrobaculum
Aerophilum
Length = 280
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 64 IVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSR--RI 121
+VS+ Y+ K G P+G+ + S N G G A L + + ++ E + R R
Sbjct: 148 VVSSTASYVLKNGXPQGVDVISVNFPRRLGRGVRAKLVKAAKLRYAQQVVERVDPRGVRY 207
Query: 122 IWVH 125
W++
Sbjct: 208 YWLY 211
>pdb|1VLJ|A Chain A, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
pdb|1VLJ|B Chain B, Crystal Structure Of Nadh-Dependent Butanol Dehydrogenase
A (Tm0820) From Thermotoga Maritima At 1.78 A Resolution
Length = 407
Score = 26.2 bits (56), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 29 SRQLFVMGSEGPPAVTIHVTGFK------------KFHGVSENPTETIVSNLREYMKKKG 76
++++F EG + + FK K G+ E + IV N+ ++K
Sbjct: 321 AKKIFGFEGEGEELILKGIEAFKNWLKKVGAPVSLKDAGIPEEDIDKIVDNVMLLVEKNL 380
Query: 77 MPKGLILGSCNILE 90
PKG LG +LE
Sbjct: 381 KPKGASLGRIMVLE 394
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,281,550
Number of Sequences: 62578
Number of extensions: 199682
Number of successful extensions: 501
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 31
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)