Query 029937
Match_columns 185
No_of_seqs 104 out of 646
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01470 Peptidase_C15: Pyrogl 100.0 9.6E-36 2.1E-40 247.2 6.3 121 44-184 2-122 (202)
2 PRK13195 pyrrolidone-carboxyla 100.0 4.7E-35 1E-39 246.8 10.6 121 44-184 3-126 (222)
3 PRK13194 pyrrolidone-carboxyla 100.0 5.3E-35 1.1E-39 244.4 10.5 121 44-184 2-122 (208)
4 PRK13193 pyrrolidone-carboxyla 100.0 6.2E-35 1.3E-39 244.1 10.3 121 44-184 2-122 (209)
5 COG2039 Pcp Pyrrolidone-carbox 100.0 3.4E-35 7.3E-40 241.5 7.3 121 44-184 2-122 (207)
6 PRK13196 pyrrolidone-carboxyla 100.0 1.2E-34 2.6E-39 242.6 10.2 121 44-184 3-125 (211)
7 TIGR00504 pyro_pdase pyrogluta 100.0 1.2E-33 2.5E-38 236.8 9.5 120 44-184 1-120 (212)
8 PRK13197 pyrrolidone-carboxyla 100.0 3.7E-33 8.1E-38 234.0 10.9 121 44-184 3-123 (215)
9 cd00501 Peptidase_C15 Pyroglut 100.0 2E-32 4.4E-37 225.0 10.2 121 44-184 2-122 (194)
10 PF06162 DUF976: Caenorhabditi 99.7 3.7E-17 8E-22 131.6 7.3 116 44-184 25-143 (166)
11 KOG4755 Predicted pyroglutamyl 98.9 6.6E-09 1.4E-13 87.4 9.1 118 44-183 21-138 (213)
12 PLN02778 3,5-epimerase/4-reduc 54.8 25 0.00053 30.3 4.9 28 37-70 4-31 (298)
13 PF06753 Bradykinin: Bradykini 52.5 6 0.00013 20.9 0.4 9 48-56 6-14 (19)
14 PF04321 RmlD_sub_bind: RmlD s 50.5 23 0.00049 30.4 4.0 13 117-129 49-61 (286)
15 PRK12655 fructose-6-phosphate 45.7 29 0.00062 29.5 3.8 15 49-63 18-32 (220)
16 TIGR00875 fsa_talC_mipB fructo 41.2 32 0.00069 29.0 3.4 14 49-62 18-31 (213)
17 COG1086 Predicted nucleoside-d 37.6 51 0.0011 32.2 4.4 26 94-128 309-334 (588)
18 COG1091 RfbD dTDP-4-dehydrorha 31.2 95 0.0021 27.4 4.8 17 117-133 48-64 (281)
19 PRK09620 hypothetical protein; 29.6 1.7E+02 0.0037 24.7 6.0 30 102-141 77-106 (229)
20 KOG3243 6,7-dimethyl-8-ribityl 29.6 1.2E+02 0.0026 24.3 4.7 47 83-141 52-98 (158)
21 PLN02260 probable rhamnose bio 28.4 80 0.0017 30.3 4.2 59 43-130 381-439 (668)
22 PRK06849 hypothetical protein; 27.7 1.6E+02 0.0034 26.2 5.7 24 41-70 3-26 (389)
23 PRK09987 dTDP-4-dehydrorhamnos 27.5 1E+02 0.0023 26.2 4.4 19 104-129 46-64 (299)
24 PRK07077 hypothetical protein; 26.0 80 0.0017 27.1 3.4 35 92-133 33-67 (238)
25 PRK14697 bifunctional 5'-methy 23.5 67 0.0014 26.9 2.4 17 117-133 66-82 (233)
26 PF13983 YsaB: YsaB-like lipop 22.5 40 0.00088 24.0 0.7 12 44-55 36-47 (77)
27 cd00956 Transaldolase_FSA Tran 22.2 47 0.001 27.7 1.2 16 49-64 17-32 (211)
28 KOG1780 Small Nuclear ribonucl 21.6 70 0.0015 23.0 1.8 34 22-57 8-41 (77)
29 PRK06714 S-adenosylhomocystein 21.1 75 0.0016 26.9 2.3 17 117-133 66-82 (236)
30 PRK12653 fructose-6-phosphate 21.0 36 0.00079 28.8 0.3 16 49-64 18-33 (220)
31 COG0623 FabI Enoyl-[acyl-carri 20.4 3.7E+02 0.0081 23.6 6.3 70 44-126 8-91 (259)
32 PRK12656 fructose-6-phosphate 20.2 41 0.00089 28.6 0.5 15 50-64 19-33 (222)
33 PF08660 Alg14: Oligosaccharid 20.0 87 0.0019 25.2 2.3 27 117-143 90-133 (170)
No 1
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=100.00 E-value=9.6e-36 Score=247.23 Aligned_cols=121 Identities=28% Similarity=0.400 Sum_probs=88.2
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|+.|++.. . .+. .++..+|||+|+.+.+.+ +++|+ +++||+|
T Consensus 2 ~ILvTGFgpF~~~~~NpS~~~v~~L~~~~----~-~~~-~v~~~~lPV~~~~~~~~l----~~~l~-------~~~PdlV 64 (202)
T PF01470_consen 2 RILVTGFGPFGGVPVNPSWELVKRLPGEL----I-GGA-EVHTRELPVSYEKAFEAL----EELLE-------EHQPDLV 64 (202)
T ss_dssp EEEEEEE-S-TT-SS-HHHHHHHHHTTSE----E-TTE-EEEEEEE-SSHHHHHHHH----HHHHH-------HH--SEE
T ss_pred EEEEecccCCCCCCCChHHHHHHHcCCCc----C-CCc-eEEEEEecCchHhHHHHH----HHHHH-------hcCCcEE
Confidence 89999999999999999999999998521 1 222 457789999999998875 66676 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+||+++++.|+||++|+|.+++++||++|++|.+++|+++|| .+|+|+||+++|++
T Consensus 65 IhlGva~~~~~i~lEr~A~N~~d~~~pD~~G~~p~~~~i~~~gp---~~~~t~lp~~~l~~ 122 (202)
T PF01470_consen 65 IHLGVAGGRKSIRLERVAINWADFRIPDNDGRQPKDEPIVPDGP---EAYFTTLPVRALVE 122 (202)
T ss_dssp EEEEE-TT-SSEEEESEEES-BE-SS--TTS---ESB-SSTTS----SEEE-BS-HHHHHH
T ss_pred EEEeecCCcchhhHHHHhhccCCCcCCcccCCccCCccccCCCc---cceecCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 57999999999864
No 2
>PRK13195 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=4.7e-35 Score=246.77 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=105.7
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++++.|.+. .+ .+. .+...+|||+|+.+.+.+ +++++ +++||+|
T Consensus 3 ~ILvTGF~PFgg~~~NPS~~~v~~L~~~----~~-~~~-~v~~~~lPv~f~~~~~~l----~~~i~-------~~~Pd~V 65 (222)
T PRK13195 3 KVLVTGFGPYGVTPVNPAQLTAEELDGR----TI-AGA-TVISRIVPNTFFESIAAA----QQAIA-------EIEPALV 65 (222)
T ss_pred EEEEeeecCCCCCCcCchHHHHHhcccc----cc-CCe-EEEEEEeCeEehHHHHHH----HHHHH-------HHCCCEE
Confidence 6999999999999999999999999852 12 121 345679999999998875 66666 7899999
Q ss_pred EEecccCCCCceeeeeeeeecCCCC---CCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFR---CPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~---~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|++||+|+|.+|++ +|||+|++|.+++|+++|| .+|+|+||+++|++
T Consensus 66 i~~G~a~gr~~itlErvAiN~~d~~~~~ipDn~G~~p~~~~I~~~gp---~ay~stLpv~~iv~ 126 (222)
T PRK13195 66 IMLGEYPGRSMITVERLAQNVNDCGRYGLADCAGRVLVGEPTDPAGP---VAYHATVPVRAMVL 126 (222)
T ss_pred EEeCccCCcCceEeEEEEEecccccccCCCCCCCCcCCCCcccCCCc---ceeecCCCHHHHHH
Confidence 9999999999999999999998864 9999999999999999997 58999999999874
No 3
>PRK13194 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=5.3e-35 Score=244.38 Aligned_cols=121 Identities=26% Similarity=0.333 Sum_probs=107.2
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++++.|.+.. + .+ ..+...+|||+|+.+.+.+ +++|+ +++||+|
T Consensus 2 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~-~~v~~~~LPV~~~~~~~~l----~~~l~-------~~~Pd~v 64 (208)
T PRK13194 2 KVLVTGFEPFGGDKKNPTMDIVKALDGKK----I-GD-AKVFGRVLPVSFKRAREEL----EKVLD-------EIKPDIT 64 (208)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHhccccc----c-CC-cEEEEEEeCCchHhHHHHH----HHHHH-------HhCCCEE
Confidence 69999999999999999999999998631 2 12 1456779999999999885 66666 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+|||+|+|.+++++||++|++|.+++|+++|| .+|+|+||+++|+.
T Consensus 65 lhlG~a~~r~~i~lEr~A~N~~~~~~pD~~G~~p~~~~i~~~gp---~~y~ttlp~~~l~~ 122 (208)
T PRK13194 65 INLGLAPGRTHISVERVAVNAIDARIPDNDGEKPEDEPIVEGAP---AAYFATLPTREIVE 122 (208)
T ss_pred EEeeccCCcceEEEEEEEEcCCCCCCCCCCCCCCCCCcccCCCC---CcccCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 57999999999763
No 4
>PRK13193 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=6.2e-35 Score=244.13 Aligned_cols=121 Identities=22% Similarity=0.163 Sum_probs=107.0
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++++.|.+... . +. .+...+|||+|+.+.+.| ..+|+ +++||+|
T Consensus 2 ~vLiTGF~PF~g~~~NPS~~~v~~L~~~~~-~----~~-~v~~~~LPv~~~~~~~~l----~~~~~-------~~~Pd~v 64 (209)
T PRK13193 2 TVLLFGFEPFLEYKENPSQLIVEALNGSTI-L----KE-EVKGVILPVEYEKIEDLI----VTKIR-------EMKPILT 64 (209)
T ss_pred EEEEEeeCCCCCCCCCcHHHHHHHhhcccc-C----Cc-eEEEEEeCCcHHHHHHHH----HHHHH-------HHCCCEE
Confidence 699999999999999999999999986311 1 11 345679999999999885 66666 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+|||+|+|.+++++|||+|++|.+++|+++|| .+|+|+||+++|++
T Consensus 65 l~~G~a~~r~~i~lEr~AiN~~d~~~pDn~G~~p~~~~I~~~gp---~~~~t~lp~~~l~~ 122 (209)
T PRK13193 65 LGIGVAPGRAKITPEKIAINYKYSREGDNAGKKYKGEKIDPLGQ---DGIFTNIPVEDLVD 122 (209)
T ss_pred EEecccCCcCceEEEEEEEccCcCcCCccCCCCcCCCcccCCCc---ceeecCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 57999999999864
No 5
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-35 Score=241.49 Aligned_cols=121 Identities=25% Similarity=0.294 Sum_probs=108.5
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+||||||+||++++.||||++|+.|+.... .+ ..+...+|||+|.++.+.| ...++ +.+||+|
T Consensus 2 kvLvTGFePF~~~~~NPs~e~vk~L~~~~i-~g-----~~V~~~~lP~~f~~s~~~l----~~~i~-------~~qPd~v 64 (207)
T COG2039 2 KVLVTGFEPFGGEPINPSWEAVKELNGRII-GG-----AEVKGRILPVVFKKSIDAL----VQAIA-------EVQPDLV 64 (207)
T ss_pred eEEEEeccCCCCCCCChHHHHHHhcCcccc-cC-----ceEEEEEcCccHHHHHHHH----HHHHH-------hhCCCeE
Confidence 699999999999999999999999986421 11 2456779999999999885 56666 7899999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
|.+|+|+||..|++||+|+|..|+++|||+|++|.|++|.+||| .+||||||+++|++
T Consensus 65 l~iG~A~GR~~iT~ERVAINv~DarIpDN~G~qpiDepI~~dGp---aAYfstlPvkamv~ 122 (207)
T COG2039 65 LAIGQAGGRTKITPERVAINVDDARIPDNAGNQPIDEPIDPDGP---AAYFSTLPVKAMVQ 122 (207)
T ss_pred EEecccCCCCcCChhheeeccccccCCCCCCCCcCCCccCCCCc---hhhhhcCcHHHHHH
Confidence 99999999999999999999999999999999999999999998 57999999999864
No 6
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=1.2e-34 Score=242.63 Aligned_cols=121 Identities=22% Similarity=0.295 Sum_probs=108.1
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||++++.||||++++.|++.. . .+. .+...+|||+|+.+.+.| +++|+ +++||+|
T Consensus 3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~~----~-~~~-~v~~~~LPV~~~~~~~~l----~~~~~-------~~~Pd~v 65 (211)
T PRK13196 3 TLLLTGFEPFHTHPVNPSAQAAQALNGEQ----A-GAL-RVHSALLPVEPRAAMAAL----SRLLD-------ELQPSAV 65 (211)
T ss_pred EEEEEeecCCCCCCCCcHHHHHHhccccc----C-CCc-EEEEEEeCCChhHHHHHH----HHHHH-------HhCCCEE
Confidence 89999999999999999999999998642 1 111 356779999999999875 77887 7899999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcc--cCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPI--FPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I--~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+|||+|+|.+++++|||+|++|.+++| +++|| .+|+|+||+++|++
T Consensus 66 i~~G~a~gr~~i~lEr~A~N~~d~~~pDn~G~~~~~~~i~~~~~gp---~~y~stLpv~~l~~ 125 (211)
T PRK13196 66 LLTGLAAGRPQVTLERVAVNVMDFSIPDNAGQTYRDTPVCTEPDAP---AAYLSTLPLRAILA 125 (211)
T ss_pred EEecccCCcCcEEEEEEEeccccCCCCCCCCCCCCCCCcccCCCCc---cceecCCCHHHHHH
Confidence 999999999999999999999999999999999999999 88887 57999999999864
No 7
>TIGR00504 pyro_pdase pyroglutamyl-peptidase I. Alternate names include pyroglutamate aminopeptidase, pyrrolidone-carboxylate peptidase, and 5-oxoprolyl-peptidase. It removes pyroglutamate (pyrrolidone-carboxylate, a modified glutamine) that can otherwise block hydrolysis of a polypeptide at the amino end, and so can be extremely useful in the biochemical studies of proteins. The biological role in the various species in which it is found is not fully understood. The enzyme appears to be a homodimer. It does not closely resemble any other peptidases.
Probab=100.00 E-value=1.2e-33 Score=236.76 Aligned_cols=120 Identities=24% Similarity=0.318 Sum_probs=106.5
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|+.|.... + +. .+...+|||+|+.+.+.+ .++|+ +++||+|
T Consensus 1 ~ILvTGF~PF~~~~~NPS~~~v~~L~~~~----~--g~-~i~~~~lPV~~~~~~~~l----~~~l~-------~~~Pd~v 62 (212)
T TIGR00504 1 KVLLTGFEPFGVDPVNPSWEAAEELDGRT----I--GA-TVVAEILPNTFFEAIEAL----QQAID-------EIEPDIV 62 (212)
T ss_pred CEEEEeccCCCCCCCCcHHHHHHhcccCc----C--Cc-EEEEEEeCCChHHHHHHH----HHHHH-------HHCCCEE
Confidence 49999999999999999999999998631 1 11 456779999999998875 66666 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+|||+|+|.+++++|||+|++|.+++|+++|| .+|+|+||+++|+.
T Consensus 63 i~~G~a~g~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttLpv~~l~~ 120 (212)
T TIGR00504 63 IMLGLAPGRSMITVERVAINVNDARIPDNAGEQPIDEPIVPDGP---AAYFATLPVRAMVL 120 (212)
T ss_pred EEeccCCCcCceeeEEeEeccCcCCCCCCCCCccCCCcccCCCC---ceeecCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 57999999999864
No 8
>PRK13197 pyrrolidone-carboxylate peptidase; Provisional
Probab=100.00 E-value=3.7e-33 Score=234.05 Aligned_cols=121 Identities=25% Similarity=0.230 Sum_probs=106.9
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|+.|... .+ .+. .+...+|||+|+.+.+.+ .++++ +++||+|
T Consensus 3 ~ILvTGF~PF~~~~~NPS~~~~~~L~~~----~~-~~~-~i~~~~lPV~y~~~~~~l----~~~l~-------~~~Pd~v 65 (215)
T PRK13197 3 KILVTGFDPFGGEKINPSWEAVKQLPGK----EI-GGA-EIIKRQLPTVFGKSAEVL----KEAIE-------EVQPDAV 65 (215)
T ss_pred EEEEeeccCCCCCCCCcHHHHHHHcccc----cc-CCc-EEEEEEECCChHHHHHHH----HHHHH-------HhCCCEE
Confidence 7999999999999999999999999863 12 122 456679999999998885 55665 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+|||+|+|..++++|||+|++|.+++|+++|| .+|+|+||+++|++
T Consensus 66 ih~G~a~~~~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~Lp~~~l~~ 123 (215)
T PRK13197 66 ICIGQAGGRTDITPERVAINIDDARIPDNEGNQPIDEPIVEDGP---AAYFSTLPIKAMVK 123 (215)
T ss_pred EEeccCCCCCcEEeEeeecccCCccCCCCCCCCcCCCcccCCCC---ceeEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999998 47999999999864
No 9
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=99.98 E-value=2e-32 Score=225.00 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=107.1
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||++++.||||++|++|.+... .+. .+...+|||+|+.+.+.+ +++|+ +++||+|
T Consensus 2 ~vLvTGF~PF~~~~~NpS~~~v~~L~~~~~-~~~-----~i~~~~lpv~y~~~~~~~----~~~~~-------~~~pd~v 64 (194)
T cd00501 2 KVLVTGFGPFGGEPVNPSWEAVKELPKLIL-GGA-----EVVGLELPVVFQKAVEVL----PELIE-------EHKPDLV 64 (194)
T ss_pred EEEEEecCCCCCCCCChHHHHHHhcccccc-CCc-----EEEEEEcCccHHHHHHHH----HHHHH-------HhCCCEE
Confidence 799999999999999999999999986422 121 356679999999998885 66776 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|+||++|+|.++++.||++|++|.+++|.++|| .+|+|+||+++|+.
T Consensus 65 lhlG~~~~~~~i~lE~~A~n~~~~~~pD~~G~~p~~~~i~~~g~---~~~~t~lp~~~l~~ 122 (194)
T cd00501 65 IHVGLAGGRSTITIERVAINIDDARIPDNEGNQPIDEPIVPGGP---AAYFSTLPVKAIVK 122 (194)
T ss_pred EEecccCCCCceeEEeEEEccCCCCCCCCCCCcCCCCcccCCCC---CeeeecCCHHHHHH
Confidence 99999999999999999999998899999999999999999987 57999999999863
No 10
>PF06162 DUF976: Caenorhabditis elegans protein of unknown function (DUF976); InterPro: IPR010381 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=99.70 E-value=3.7e-17 Score=131.63 Aligned_cols=116 Identities=20% Similarity=0.247 Sum_probs=94.2
Q ss_pred EEEEEcc-cCCCCCCCChHHHHH--HHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937 44 TIHVTGF-KKFHGVSENPTETIV--SNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (185)
Q Consensus 44 ~ILITGF-gPF~g~~~NPS~~iv--~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P 120 (185)
.++|||| |||.+. |||..++ .+|.+. + ... .+ ...+|+||+.|.+.+ +++|. .+|
T Consensus 25 ~~vvTgF~~~fe~~--nps~~viv~DEL~k~----~--~~~-~l-~~K~~~sYe~V~ekv----pel~~--------~~~ 82 (166)
T PF06162_consen 25 KVVVTGFDGPFEGE--NPSSAVIVLDELEKE----G--EDK-IL-FFKMEVSYEEVDEKV----PELWK--------EQP 82 (166)
T ss_pred ceeEEecCCCccCC--CCCcceeeHHHhhcC----C--ccc-ee-eeeccchHHHHHHHh----HHHHh--------hCC
Confidence 5789999 599775 5665555 999863 2 111 12 239999999999985 88896 469
Q ss_pred cEEEEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 121 dlvIHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
|++||+|.|+..++|++||.|+-. +|..+|.+|+.|.+.++-.++- ...+.|.++.+.|+.
T Consensus 83 ~~viHL~~Hs~kNtI~ieq~AFsd-GY~~~D~nG~vPegnkv~~~~~--e~~lkt~vdce~Lvk 143 (166)
T PF06162_consen 83 DFVIHLASHSVKNTIYIEQKAFSD-GYCQPDKNGCVPEGNKVKCESE--ETVLKTFVDCEELVK 143 (166)
T ss_pred CeEEEecCCCCcceEEEEehhhcC-CCcCCCCCCcCCCCCeeccCcc--ccccccccCHHHHHH
Confidence 999999999999999999999995 7999999999999999965554 368999999998863
No 11
>KOG4755 consensus Predicted pyroglutamyl peptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.6e-09 Score=87.39 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=89.9
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|+.+..+||-|...||+|.++++|.+. .+....+ .-..-.+|+.|.+.+ ++.|. .+. ...
T Consensus 21 kvv~v~~~p~~g~~~~~aviv~dEl~k~---~~~s~~l----~~~~~~sy~~v~~~i----~e~~~-------~~~-~~a 81 (213)
T KOG4755|consen 21 KVVTVFDFPFFGKQPSPAVIVLDELVKK---GGVSKYL----CFKMCTSYETVDEII----LELWE-------EHL-QSA 81 (213)
T ss_pred EEEEeccCCccCccCCchhhhHHHHHHc---CCceecc----eecceechhhHhHHH----HHhhc-------cce-eEE
Confidence 3555555565554449999999999863 1121221 113333999999884 77776 444 899
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhh
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLC 183 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~ 183 (185)
||+|.++...+|.+|+.|++. +|..-|.+|++|.++++.-++|+ ...+|..+...++
T Consensus 82 Ihl~sh~~knti~i~~~af~~-gy~~~d~~g~vp~~nkv~~~~~d--~~~~s~i~c~~vv 138 (213)
T KOG4755|consen 82 IHLGSHSQKNTIQIEQSAFSS-GYTQKDKCGKVPEGNKVKCDGPD--TGGRSCINCEIVV 138 (213)
T ss_pred EEecccccCcEEEEEEecccC-CccchhhcccccCCceeEecccc--ccccccccHHHHH
Confidence 999999999999999999995 78999999999999999999984 6888888877654
No 12
>PLN02778 3,5-epimerase/4-reductase
Probab=54.75 E-value=25 Score=30.28 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=19.1
Q ss_pred CCCCCceEEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 37 SEGPPAVTIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 37 ~~~~~~~~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
+......+|||||=.=|-|. .+++.|.+
T Consensus 4 ~~~~~~~kiLVtG~tGfiG~------~l~~~L~~ 31 (298)
T PLN02778 4 TAGSATLKFLIYGKTGWIGG------LLGKLCQE 31 (298)
T ss_pred CCCCCCCeEEEECCCCHHHH------HHHHHHHh
Confidence 33445568999998777663 37777764
No 13
>PF06753 Bradykinin: Bradykinin; InterPro: IPR009608 This family consists of several bradykinin sequences. The skins of anuran amphibians, in addition to mucus glands, contain highly specialised poison glands, which, in reaction to stress or attack, exude a complex noxious cocktail of biologically active molecules. These secretions often contain a plethora of peptides among which bradykinin or structural variants have been identified [].; GO: 0005179 hormone activity, 0006950 response to stress, 0005576 extracellular region
Probab=52.47 E-value=6 Score=20.94 Aligned_cols=9 Identities=44% Similarity=0.951 Sum_probs=7.3
Q ss_pred EcccCCCCC
Q 029937 48 TGFKKFHGV 56 (185)
Q Consensus 48 TGFgPF~g~ 56 (185)
+||.||.+.
T Consensus 6 ~gftpfrgk 14 (19)
T PF06753_consen 6 PGFTPFRGK 14 (19)
T ss_pred CCCCccccc
Confidence 699999763
No 14
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=50.46 E-value=23 Score=30.40 Aligned_cols=13 Identities=0% Similarity=-0.046 Sum_probs=6.1
Q ss_pred CCCCcEEEEeccc
Q 029937 117 NSRRIIWVHFGVN 129 (185)
Q Consensus 117 ~~~PdlvIHlGva 129 (185)
..+||+|||++-.
T Consensus 49 ~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 49 AFKPDVVINCAAY 61 (286)
T ss_dssp HH--SEEEE----
T ss_pred HhCCCeEecccee
Confidence 5689999999743
No 15
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=45.67 E-value=29 Score=29.46 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=12.7
Q ss_pred cccCCCCCCCChHHH
Q 029937 49 GFKKFHGVSENPTET 63 (185)
Q Consensus 49 GFgPF~g~~~NPS~~ 63 (185)
.+|+|.|++.|||-.
T Consensus 18 ~~~~i~GvTTNPsll 32 (220)
T PRK12655 18 RIFPIAGVTTNPSII 32 (220)
T ss_pred hCCCccEEeCCHHHH
Confidence 468999999999953
No 16
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=41.23 E-value=32 Score=28.97 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.3
Q ss_pred cccCCCCCCCChHH
Q 029937 49 GFKKFHGVSENPTE 62 (185)
Q Consensus 49 GFgPF~g~~~NPS~ 62 (185)
.+|+|.|++.|||-
T Consensus 18 ~~~~i~GvTTNPsl 31 (213)
T TIGR00875 18 ELGILAGVTTNPSL 31 (213)
T ss_pred hcCCcceEeCCHHH
Confidence 57999999999993
No 17
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=37.60 E-value=51 Score=32.17 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=18.4
Q ss_pred cccchhHHHHHHHhhcccCCCCCCCCCcEEEEecc
Q 029937 94 HGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGV 128 (185)
Q Consensus 94 ~~v~~~l~~~L~~~~~~~~~~~~~~~PdlvIHlGv 128 (185)
..|.+. +++.++++ .++||+|+|-.-
T Consensus 309 gdVrD~--~~~~~~~~-------~~kvd~VfHAAA 334 (588)
T COG1086 309 GDVRDR--DRVERAME-------GHKVDIVFHAAA 334 (588)
T ss_pred cccccH--HHHHHHHh-------cCCCceEEEhhh
Confidence 344554 55777887 789999999643
No 18
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=31.18 E-value=95 Score=27.42 Aligned_cols=17 Identities=6% Similarity=0.124 Sum_probs=12.8
Q ss_pred CCCCcEEEEecccCCCC
Q 029937 117 NSRRIIWVHFGVNSGAT 133 (185)
Q Consensus 117 ~~~PdlvIHlGva~~~~ 133 (185)
+.+||+|||..-...-.
T Consensus 48 ~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 48 ETRPDVVINAAAYTAVD 64 (281)
T ss_pred hhCCCEEEECccccccc
Confidence 67899999987655433
No 19
>PRK09620 hypothetical protein; Provisional
Probab=29.62 E-value=1.7e+02 Score=24.68 Aligned_cols=30 Identities=7% Similarity=0.195 Sum_probs=19.2
Q ss_pred HHHHHhhcccCCCCCCCCCcEEEEecccCCCCceeeeeee
Q 029937 102 QTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQA 141 (185)
Q Consensus 102 ~~L~~~~~~~~~~~~~~~PdlvIHlGva~~~~~i~LEr~A 141 (185)
+.+.+++. ..++|+|||+.-- .-+++|+.+
T Consensus 77 ~~l~~~~~-------~~~~D~VIH~AAv---sD~~~~~~~ 106 (229)
T PRK09620 77 DKMKSIIT-------HEKVDAVIMAAAG---SDWVVDKIC 106 (229)
T ss_pred HHHHHHhc-------ccCCCEEEECccc---cceeccccc
Confidence 44555554 4679999998442 456666654
No 20
>KOG3243 consensus 6,7-dimethyl-8-ribityllumazine synthase [Coenzyme transport and metabolism]
Probab=29.56 E-value=1.2e+02 Score=24.32 Aligned_cols=47 Identities=11% Similarity=-0.064 Sum_probs=33.5
Q ss_pred cceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEEEEecccCCCCceeeeeee
Q 029937 83 LGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGATRFAIEQQA 141 (185)
Q Consensus 83 ~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~PdlvIHlGva~~~~~i~LEr~A 141 (185)
-+..+.+|-||+--+-. +++.+ +...|+||.+|+--...+...|-++
T Consensus 52 nI~ie~VPGS~Elp~g~-----~~~~~-------r~~~daVi~IGvlIkGsTmHfeyis 98 (158)
T KOG3243|consen 52 NIEIEWVPGSFELPVGA-----QNLGK-------RGKFDAVICIGVLIKGSTMHFEYIS 98 (158)
T ss_pred ceeEEEcCCceeccHHH-----Hhhhh-------ccCceEEEEEEEEEecCchhHHHHH
Confidence 35667889999854332 55555 6789999999997766666666554
No 21
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=28.41 E-value=80 Score=30.30 Aligned_cols=59 Identities=10% Similarity=0.073 Sum_probs=32.4
Q ss_pred eEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcE
Q 029937 43 VTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRII 122 (185)
Q Consensus 43 ~~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdl 122 (185)
.+|||||=.=|-|. .+++.|.+ .+. .+ . +.. ....+. +.+...+. ..+||+
T Consensus 381 mkiLVtGa~G~iG~------~l~~~L~~----~g~--~v---~---~~~--~~l~d~--~~v~~~i~-------~~~pd~ 431 (668)
T PLN02260 381 LKFLIYGRTGWIGG------LLGKLCEK----QGI--AY---E---YGK--GRLEDR--SSLLADIR-------NVKPTH 431 (668)
T ss_pred ceEEEECCCchHHH------HHHHHHHh----CCC--eE---E---eec--cccccH--HHHHHHHH-------hhCCCE
Confidence 48999998666553 36666654 232 11 0 000 011111 22345555 568999
Q ss_pred EEEecccC
Q 029937 123 WVHFGVNS 130 (185)
Q Consensus 123 vIHlGva~ 130 (185)
|||+.-..
T Consensus 432 Vih~Aa~~ 439 (668)
T PLN02260 432 VFNAAGVT 439 (668)
T ss_pred EEECCccc
Confidence 99998644
No 22
>PRK06849 hypothetical protein; Provisional
Probab=27.65 E-value=1.6e+02 Score=26.19 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=16.9
Q ss_pred CceEEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 41 PAVTIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 41 ~~~~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
++.+|||||=+.- .+..+++.|.+
T Consensus 3 ~~~~VLI~G~~~~------~~l~iar~l~~ 26 (389)
T PRK06849 3 TKKTVLITGARAP------AALELARLFHN 26 (389)
T ss_pred CCCEEEEeCCCcH------HHHHHHHHHHH
Confidence 4458999996532 46678888876
No 23
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=27.47 E-value=1e+02 Score=26.17 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=13.6
Q ss_pred HHHhhcccCCCCCCCCCcEEEEeccc
Q 029937 104 LQSAINEKDSESANSRRIIWVHFGVN 129 (185)
Q Consensus 104 L~~~~~~~~~~~~~~~PdlvIHlGva 129 (185)
+.++++ ..+||+|||+.-.
T Consensus 46 ~~~~~~-------~~~~D~Vih~Aa~ 64 (299)
T PRK09987 46 VAETVR-------KIRPDVIVNAAAH 64 (299)
T ss_pred HHHHHH-------hcCCCEEEECCcc
Confidence 455565 5679999999643
No 24
>PRK07077 hypothetical protein; Provisional
Probab=25.98 E-value=80 Score=27.09 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=23.4
Q ss_pred cccccchhHHHHHHHhhcccCCCCCCCCCcEEEEecccCCCC
Q 029937 92 AGHGAVAPLYQTLQSAINEKDSESANSRRIIWVHFGVNSGAT 133 (185)
Q Consensus 92 sy~~v~~~l~~~L~~~~~~~~~~~~~~~PdlvIHlGva~~~~ 133 (185)
-+.++.......+..++. ..+|+.||.+|++++-.
T Consensus 33 ~~~g~~~~~~~a~~~~~~-------~~~~~~vIs~G~AGgL~ 67 (238)
T PRK07077 33 VCAARADRLERALLAAFD-------ARGCAGIVSFGVAGGLD 67 (238)
T ss_pred EecCCCHHHHHHHHHHHH-------hcCCCEEEEEEeccccC
Confidence 334455544344555564 56899999999999874
No 25
>PRK14697 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Provisional
Probab=23.54 E-value=67 Score=26.93 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=15.4
Q ss_pred CCCCcEEEEecccCCCC
Q 029937 117 NSRRIIWVHFGVNSGAT 133 (185)
Q Consensus 117 ~~~PdlvIHlGva~~~~ 133 (185)
+.+||.||++|++++-+
T Consensus 66 ~f~~~~II~~G~AG~l~ 82 (233)
T PRK14697 66 KFDVDAIINTGVAGGLH 82 (233)
T ss_pred hcCCCEEEEEecccCCC
Confidence 68999999999999875
No 26
>PF13983 YsaB: YsaB-like lipoprotein
Probab=22.48 E-value=40 Score=24.04 Aligned_cols=12 Identities=58% Similarity=1.151 Sum_probs=10.9
Q ss_pred EEEEEcccCCCC
Q 029937 44 TIHVTGFKKFHG 55 (185)
Q Consensus 44 ~ILITGFgPF~g 55 (185)
+|-||||+.|.|
T Consensus 36 ~idv~~FeqfQg 47 (77)
T PF13983_consen 36 KIDVTGFEQFQG 47 (77)
T ss_pred eEeecchhhhcc
Confidence 699999999977
No 27
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=22.21 E-value=47 Score=27.73 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=13.2
Q ss_pred cccCCCCCCCChHHHH
Q 029937 49 GFKKFHGVSENPTETI 64 (185)
Q Consensus 49 GFgPF~g~~~NPS~~i 64 (185)
.+|+|.|++.|||-..
T Consensus 17 ~~~~i~GvTTNPsll~ 32 (211)
T cd00956 17 ETGLLDGVTTNPSLIA 32 (211)
T ss_pred hcCCcCccccCHHHHH
Confidence 4789999999998643
No 28
>KOG1780 consensus Small Nuclear ribonucleoprotein G [RNA processing and modification]
Probab=21.62 E-value=70 Score=23.03 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=22.7
Q ss_pred ccccceeeeeeeecCCCCCCceEEEEEcccCCCCCC
Q 029937 22 NTLPYFISRQLFVMGSEGPPAVTIHVTGFKKFHGVS 57 (185)
Q Consensus 22 ~~~~~~~~~~~~~m~~~~~~~~~ILITGFgPF~g~~ 57 (185)
|.-.|.-.|-+--. .....++=+++||.||-+.-
T Consensus 8 eLkkymdKki~lkl--nG~r~v~GiLrGyD~FmNiV 41 (77)
T KOG1780|consen 8 ELKKYMDKKIVLKL--NGGRKVTGILRGYDPFMNIV 41 (77)
T ss_pred hHHHhhhheEEEEe--CCCcEEEEEEeccchHHhhh
Confidence 44455555533333 66777788999999998754
No 29
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=21.06 E-value=75 Score=26.88 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=15.3
Q ss_pred CCCCcEEEEecccCCCC
Q 029937 117 NSRRIIWVHFGVNSGAT 133 (185)
Q Consensus 117 ~~~PdlvIHlGva~~~~ 133 (185)
+.+||+||++|++++-+
T Consensus 66 ~f~~~~IIn~G~aG~l~ 82 (236)
T PRK06714 66 EFQPDELFMTGICGSLS 82 (236)
T ss_pred hCCCCEEEEEEcccCCC
Confidence 78999999999999865
No 30
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=21.03 E-value=36 Score=28.80 Aligned_cols=16 Identities=25% Similarity=0.366 Sum_probs=13.3
Q ss_pred cccCCCCCCCChHHHH
Q 029937 49 GFKKFHGVSENPTETI 64 (185)
Q Consensus 49 GFgPF~g~~~NPS~~i 64 (185)
.+|+|.|++.|||-..
T Consensus 18 ~~~~i~GvTTNPsll~ 33 (220)
T PRK12653 18 RIFPLAGVTTNPSIIA 33 (220)
T ss_pred hCCCccEEeCCHHHHH
Confidence 4789999999999643
No 31
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=20.39 E-value=3.7e+02 Score=23.62 Aligned_cols=70 Identities=14% Similarity=0.104 Sum_probs=37.6
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhC--------------CCCcceecceeeEeeccccccchhHHHHHHHhhc
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKK--------------GMPKGLILGSCNILETAGHGAVAPLYQTLQSAIN 109 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~--------------~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~ 109 (185)
++||+|-.- ..--.|-|++.|.+.-.+- .+-+.+..-......|+.++..+.++++|.+.|.
T Consensus 8 ~~lI~Gvan----~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g 83 (259)
T COG0623 8 RILIMGVAN----NRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG 83 (259)
T ss_pred eEEEEEecc----cccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhC
Confidence 789998642 1222488998888642100 0000000001224456666666666666766663
Q ss_pred ccCCCCCCCCCcEEEEe
Q 029937 110 EKDSESANSRRIIWVHF 126 (185)
Q Consensus 110 ~~~~~~~~~~PdlvIHl 126 (185)
+.|.++|-
T Consensus 84 ---------~lD~lVHs 91 (259)
T COG0623 84 ---------KLDGLVHS 91 (259)
T ss_pred ---------cccEEEEE
Confidence 57788774
No 32
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=20.22 E-value=41 Score=28.60 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=12.8
Q ss_pred ccCCCCCCCChHHHH
Q 029937 50 FKKFHGVSENPTETI 64 (185)
Q Consensus 50 FgPF~g~~~NPS~~i 64 (185)
+|+|.|++.|||-..
T Consensus 19 ~~~i~GvTTNPsll~ 33 (222)
T PRK12656 19 ILPLAGVTSNPSIAK 33 (222)
T ss_pred cCCcceEeCCHHHHH
Confidence 689999999999644
No 33
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=20.04 E-value=87 Score=25.22 Aligned_cols=27 Identities=22% Similarity=0.198 Sum_probs=22.7
Q ss_pred CCCCcEEEEecccC-----------------CCCceeeeeeeee
Q 029937 117 NSRRIIWVHFGVNS-----------------GATRFAIEQQAVN 143 (185)
Q Consensus 117 ~~~PdlvIHlGva~-----------------~~~~i~LEr~A~N 143 (185)
+.+||+||.-|-.. +.+.|.+|..|+=
T Consensus 90 r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~aRv 133 (170)
T PF08660_consen 90 RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFARV 133 (170)
T ss_pred HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeeeec
Confidence 56899999998765 7889999999864
Done!