Query 029937
Match_columns 185
No_of_seqs 104 out of 646
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:18:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3giu_A Pyrrolidone-carboxylate 100.0 2.5E-36 8.5E-41 252.2 6.9 123 41-184 2-124 (215)
2 3ro0_A Pyrrolidone-carboxylate 100.0 7.8E-36 2.7E-40 250.5 9.3 121 44-184 4-124 (223)
3 3lac_A Pyrrolidone-carboxylate 100.0 9E-36 3.1E-40 248.8 9.0 121 44-184 3-123 (215)
4 4hps_A Pyrrolidone-carboxylate 100.0 6E-36 2.1E-40 251.9 7.4 121 44-184 25-145 (228)
5 4gxh_A Pyrrolidone-carboxylate 100.0 2.1E-35 7.2E-40 246.7 8.9 121 44-184 4-124 (216)
6 1iu8_A Pyrrolidone-carboxylate 100.0 2.1E-35 7.1E-40 245.1 8.7 118 44-184 2-119 (206)
7 1x10_A Pyrrolidone-carboxylate 100.0 3.3E-35 1.1E-39 244.1 9.4 121 44-184 2-122 (208)
8 1a2z_A Pyrrolidone carboxyl pe 100.0 5.7E-35 1.9E-39 244.7 9.0 121 44-184 3-123 (220)
9 2ebj_A Pyrrolidone carboxyl pe 100.0 4.3E-35 1.5E-39 240.9 7.7 119 44-184 1-119 (192)
10 4fc5_A TON_0340, putative unch 54.3 37 0.0013 28.6 7.1 22 135-157 112-133 (270)
11 2pbq_A Molybdenum cofactor bio 40.8 45 0.0015 25.6 5.2 82 42-140 7-90 (178)
12 3otg_A CALG1; calicheamicin, T 36.3 29 0.00099 28.6 3.7 29 40-70 18-46 (412)
13 3rsc_A CALG2; TDP, enediyne, s 35.5 50 0.0017 27.3 5.1 28 41-70 19-46 (415)
14 3enk_A UDP-glucose 4-epimerase 30.9 84 0.0029 25.1 5.6 12 117-128 76-87 (341)
15 3ia7_A CALG4; glycosysltransfe 27.4 77 0.0026 25.7 4.8 25 44-70 6-30 (402)
16 4b8w_A GDP-L-fucose synthase; 26.9 69 0.0024 24.9 4.3 19 104-129 53-71 (319)
17 4fzr_A SSFS6; structural genom 23.9 52 0.0018 27.2 3.1 26 43-70 16-41 (398)
18 1y5e_A Molybdenum cofactor bio 20.4 2.7E+02 0.0093 20.7 6.8 78 42-140 15-94 (169)
No 1
>3giu_A Pyrrolidone-carboxylate peptidase; IDP00836, hydrolase, PROT thiol protease, structural genomics; HET: MSE PG4; 1.25A {Staphylococcus aureus subsp} SCOP: c.56.4.0
Probab=100.00 E-value=2.5e-36 Score=252.21 Aligned_cols=123 Identities=19% Similarity=0.187 Sum_probs=108.8
Q ss_pred CceEEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937 41 PAVTIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (185)
Q Consensus 41 ~~~~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P 120 (185)
+.++|||||||||+++++||||+++++|++.+. +. .+...+|||+|+.+.+.+ +++|+ +++|
T Consensus 2 ~~m~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~-~i~~~~lPv~~~~~~~~l----~~~i~-------~~~P 63 (215)
T 3giu_A 2 NAMHILVTGFAPFDNQNINPSWEAVTQLEDIIG------TH-TIDKLKLPTSFKKVDNII----NKTLA-------SNHY 63 (215)
T ss_dssp --CEEEEEEECCCTTCSCCHHHHHHHHSCSEET------TE-EEEEEEECSCHHHHHHHH----HHHHH-------HSCC
T ss_pred CCcEEEEEecCCCCCCCCChHHHHHHHhccccC------Cc-EEEEEEeceehHhHHHHH----HHHHH-------HhCC
Confidence 345899999999999999999999999987421 22 456779999999998875 77777 7899
Q ss_pred cEEEEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 121 IIWVHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 121 dlvIHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
|+|||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 64 d~Vi~vG~a~gr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~stLpv~~iv~ 124 (215)
T 3giu_A 64 DVVLAIGQAGGRNAITPERVAINIDDARIPDNDDFQPIDQAIHLDGA---PAYFSNLPVKAMTQ 124 (215)
T ss_dssp SEEEEEEECTTCCSBEEBCEEESCEECSSCCTTSCCCEEECSCTTSC---SEEECCSCHHHHHH
T ss_pred CEEEEeccCCCCceEEEEEEEeccCCCCCCCCCCCCCCCCcccCCCc---cccccCCCHHHHHH
Confidence 99999999999999999999999989999999999999999999997 57999999999874
No 2
>3ro0_A Pyrrolidone-carboxylate peptidase; hydrolase-hydrolase inhibitor complex; HET: TPT; 1.50A {Bacillus amyloliquefaciens} SCOP: c.56.4.1 PDB: 3rnz_A* 1aug_A
Probab=100.00 E-value=7.8e-36 Score=250.48 Aligned_cols=121 Identities=21% Similarity=0.216 Sum_probs=108.2
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||+++++|++.+. +...+...+|||+|..+.+.+ +++|+ +.+||+|
T Consensus 4 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~~~i~~~~lPv~y~~~~~~l----~~~i~-------~~~Pd~V 66 (223)
T 3ro0_A 4 KVLLTGFDPFGGETVNPSWEAVKRLNGAAE------GPASIVSEQVPTVFYKSLAVL----REAMK-------KHQPDII 66 (223)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHTTTCEE------TTEEEEEEEECSCTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEeCCCCCCCCCChHHHHHHHhccccC------CCcEEEEEEeeeEehhHHHHH----HHHHH-------HhCCCEE
Confidence 899999999999999999999999997432 112456679999999998875 67777 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 67 ihvG~aggr~~i~lEr~A~N~~d~ripDn~G~~P~d~~i~~~Gp---~a~~stLpv~~~v~ 124 (223)
T 3ro0_A 67 ICVGQAGGRMQITPERVAINLNEARIPDNEGNQPVGEDISQGGP---AAYWTGLPIKRIVE 124 (223)
T ss_dssp EEEEECTTCCSBEEBSEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred EEeccCCCCceEEEEEEEecCCCCCCCCCCCCCCCCCCCcCCCC---ceeecCCCHHHHHH
Confidence 99999999999999999999989999999999999999999997 57999999999874
No 3
>3lac_A Pyrrolidone-carboxylate peptidase; alpha beta class, three layer sandwich, hydrolase, protease, thiol protease, structural genomics; 2.00A {Bacillus anthracis}
Probab=100.00 E-value=9e-36 Score=248.75 Aligned_cols=121 Identities=23% Similarity=0.267 Sum_probs=108.1
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||+++++|++.+. +...+...+|||+|.++.+.+ +++|+ +++||+|
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~~~i~~~~lPv~y~~~~~~l----~~~~~-------~~~Pd~V 65 (215)
T 3lac_A 3 TVLLTGFDPFGGESINPAWEVAKSLHEKTI------GEYKIISKQVPTVFHKSISVL----KEYIE-------ELAPEFI 65 (215)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHTTTTCEE------TTEEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEecCCCCCCCCChHHHHHHHhccccC------CCcEEEEEEEeeEhHHHHHHH----HHHHH-------hhCCCeE
Confidence 899999999999999999999999987322 112456779999999998875 67777 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++|+.|++||+|+|..+|++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 66 ihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp---~~~~s~Lpv~~~v~ 123 (215)
T 3lac_A 66 ICIGQAGGRPDITIERVAINIDDARIADNEGNQPVDVPVVEEGP---AAYWSTLPMKAIVK 123 (215)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred EEeccCCCCceEEEEEEEeccCCCcCCCcCCCCCCCCcCcCCCC---ceeecCCCHHHHHH
Confidence 99999999999999999999989999999999999999999998 57999999999874
No 4
>4hps_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 1.55A {Xenorhabdus bovienii} PDB: 4gxh_A
Probab=100.00 E-value=6e-36 Score=251.90 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=107.9
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|++|++. .+ .+ ..+...+|||+|..+.+.| +++|+ +.+||+|
T Consensus 25 ~VLvTGF~PF~g~~~NPS~~~v~~L~~~----~i-~~-~~i~~~~lPv~y~~~~~~l----~~~i~-------~~~Pd~V 87 (228)
T 4hps_A 25 TILVTAFDPFGGEAINPSWEAIKPLQGS----QV-FG-ANIEICQIPCIFDTSLEHL----YAAVD-------KYQPELV 87 (228)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHGGGTTC----EE-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEeccCCCCCCCChHHHHHHHhcCc----CC-CC-cEEEEEEcceEeHHHHHHH----HHHHH-------hhCCCEE
Confidence 8999999999999999999999999863 11 12 2456779999999998875 66777 6799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++|+.|+|||+|+|..+|++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 88 ihvG~aggr~~i~lEr~A~N~~d~~~pDn~G~~P~~~~i~~~Gp---~a~~stLpvk~~v~ 145 (228)
T 4hps_A 88 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGP---AAYFSRLPIKTMVN 145 (228)
T ss_dssp EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC---SEEECCSCHHHHHH
T ss_pred EEeccCCCCceEEEEEEEeccCCCCCCCcCCCCCCCCcCcCCCC---ceeeeCCCHHHHHH
Confidence 99999999999999999999889999999999999999999997 57999999999874
No 5
>4gxh_A Pyrrolidone-carboxylate peptidase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, hydrolase; 2.70A {Xenorhabdus bovienii}
Probab=100.00 E-value=2.1e-35 Score=246.68 Aligned_cols=121 Identities=21% Similarity=0.248 Sum_probs=107.5
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
||||||||||+++++||||++|++|++. .+ .+ ..+....|||+|+.+.+.| .++|+ +++||+|
T Consensus 4 tVLvTGF~PF~~~~~NPS~~~v~~L~~~----~~-~~-~~i~~~~lPv~~~~~~~~l----~~~i~-------~~~Pd~v 66 (216)
T 4gxh_A 4 TILVTAFDPFGGEAINPSWEAIKPLQGS----QV-FG-ANIEICQIPCIFDTSLEHL----YAAVD-------KYQPELV 66 (216)
T ss_dssp EEEEEEECCCTTSSSCHHHHHHGGGTTC----EE-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEeeccCCCCCCCChhHHHHHhhhcc----cC-CC-ceEEEEecCccHHHHHHHH----HHHHH-------hhCCCEE
Confidence 8999999999999999999999999752 11 12 2456779999999998875 66777 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++|+.|++||+|+|..++++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 67 i~~G~a~gr~~i~~Er~A~N~~~~r~pDn~G~~p~~~~i~~~gp---~~~~t~Lpv~~iv~ 124 (216)
T 4gxh_A 67 ISVGQAGGRTNITVERVAININDARIPDNAGNQPIDTPVIVDGP---AAYFSRLPIKTMVN 124 (216)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTCC---SEEECCSCHHHHHH
T ss_pred EEeccCCCCCcceeEEEEcccCcccCCccCCCCCCCCcccCCCc---hheecCCCHHHHHH
Confidence 99999999999999999999999999999999999999999998 57999999999874
No 6
>1iu8_A Pyrrolidone-carboxylate peptidase; hydrolase, thiol protease, complete proteome; 1.60A {Pyrococcus horikoshii} SCOP: c.56.4.1
Probab=100.00 E-value=2.1e-35 Score=245.09 Aligned_cols=118 Identities=28% Similarity=0.354 Sum_probs=107.1
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|+.|++.+ ..+....|||+|..+.+.| +++|+ +++||+|
T Consensus 2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i---------~~i~~~~lPv~~~~~~~~l----~~~~~-------~~~Pd~v 61 (206)
T 1iu8_A 2 KILLTGFEPFGGDDKNPTMDIVEALSERI---------PEVVGEILPVSFKRAREKL----LKVLD-------DVRPDIT 61 (206)
T ss_dssp CEEEEEECCCTTCSCCHHHHHHHHHHHHC---------TTEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEeecCCCCCCCCcHHHHHHHhccce---------eEEEEEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence 59999999999999999999999999853 2456679999999998875 66776 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|++||+|+|..++++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 62 i~vG~a~gr~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~Lpi~~iv~ 119 (206)
T 1iu8_A 62 INLGLAPGRTHISVERVAVNMIDARIPDNDGEQPKDEPIVEGGP---AAYFATIPTREIVE 119 (206)
T ss_dssp EEEEECTTCSSEEEECEEESCEECSSCCTTSCCCEEECSSTTCC---SEEECCSCHHHHHH
T ss_pred EEcccCCCCceEEEEEEEecCCCCccCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 57999999999874
No 7
>1x10_A Pyrrolidone-carboxylate peptidase; stability of protein, hydrolase; 2.00A {Pyrococcus furiosus} PDB: 1z8t_A 1z8x_A 1ioi_A 1x12_A 1z8w_A 2eo8_A 1iof_A 2df5_A
Probab=100.00 E-value=3.3e-35 Score=244.14 Aligned_cols=121 Identities=26% Similarity=0.319 Sum_probs=107.6
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|+.|++.. + .+ ..+...+|||+|..+.+.+ +++|+ +++||+|
T Consensus 2 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~-~~i~~~~lPv~~~~~~~~l----~~~~~-------~~~pd~v 64 (208)
T 1x10_A 2 KVLVTGFEPFGGEKINPTERIAKDLDGIK----I-GD-AQVFGRVLPVVFGKAKEVL----EKTLE-------EIKPDIA 64 (208)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TT-EEEEEEEECSSTTHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEEeecCCCCCCCChHHHHHHHhhccC----C-CC-eEEEEEEEeeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence 69999999999999999999999999741 1 12 2456779999999998875 66776 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++|+.|++||+|+|..++++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 65 i~vG~a~gr~~i~iEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttlpi~~iv~ 122 (208)
T 1x10_A 65 IHVGLAPGRSAISIERIAVNAIDARIPDNEGKKIEDEPIVPGAP---TAYFSTLPIKKIMK 122 (208)
T ss_dssp EEEEECTTCCSEEEECEEESCBCCSSCCTTSCCCCSBCSSTTSC---SEEECCSCHHHHHH
T ss_pred EEecCCCCCceEEeEEEEEcCCCcccCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 47999999999874
No 8
>1a2z_A Pyrrolidone carboxyl peptidase; N-pyroglutamate hydrolysis; 1.73A {Thermococcus litoralis} SCOP: c.56.4.1
Probab=100.00 E-value=5.7e-35 Score=244.72 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=107.6
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||++|++|++.. + .+ ..+....|||+|..+.+.| +++|+ +++||+|
T Consensus 3 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~~----~-~~-~~i~~~~lPv~~~~~~~~l----~~~i~-------~~~Pd~V 65 (220)
T 1a2z_A 3 KVLITGFEPFGGDSKNPTEQIAKYFDRKQ----I-GN-AMVYGRVLPVSVKRATIEL----KRYLE-------EIKPEIV 65 (220)
T ss_dssp EEEEEEECCCTTCSCCHHHHHHHHHTTCE----E-TT-EEEEEEEECSCHHHHHHHH----HHHHH-------HHCCSEE
T ss_pred EEEEeeccCCCCCCCCcHHHHHHHhhccc----C-CC-eEEEEEEEEeEHHHHHHHH----HHHHH-------HhCCCEE
Confidence 69999999999999999999999999741 1 12 2456779999999998875 66776 6789999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|+|++++.|++||+|+|..++++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 66 i~vG~aggr~~i~lEr~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~ttLpi~~iv~ 123 (220)
T 1a2z_A 66 INLGLAPTYSNITVERIAVNIIDARIPDNDGYQPIDEKIEEDAP---LAYMATLPVRAITK 123 (220)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTSCCCSSBCSCTTSC---SEEECCSCHHHHHH
T ss_pred EEecCCCCCceEEEEEEEccCCCCCcCCCCCCCCCCCCccCCCC---ceeEcCCCHHHHHH
Confidence 99999999999999999999999999999999999999999997 47999999999874
No 9
>2ebj_A Pyrrolidone carboxyl peptidase; TTHA08 degradation of proteins and peptides, structural genomics; 1.90A {Thermus thermophilus}
Probab=100.00 E-value=4.3e-35 Score=240.87 Aligned_cols=119 Identities=22% Similarity=0.301 Sum_probs=106.6
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCCcEE
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRRIIW 123 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~Pdlv 123 (185)
+|||||||||+++++||||+++++|++.+. +. .+...+|||+ +.+.+.| +++|+ +++||+|
T Consensus 1 ~VLvTGF~PF~~~~~NPS~~~v~~L~~~i~------~~-~i~~~~lPv~-~~~~~~l----~~~~~-------~~~pd~v 61 (192)
T 2ebj_A 1 MILVTGFEPFGSLEHNPSQALLDLLPSEVD------GK-PLRKAVLPVD-AEALGEA----LEDLH-------REGPKAV 61 (192)
T ss_dssp CEEEEEECCCTTCSCCHHHHGGGGSCSEET------TE-EEEEEEECSC-HHHHHHH----HHHHH-------TTCCSEE
T ss_pred CEEEEeecCCCCCCCChHHHHHHHhhcccC------Cc-EEEEEEeccc-ccHHHHH----HHHHH-------HhCCCEE
Confidence 599999999999999999999999997532 22 4566789999 9998875 77787 7799999
Q ss_pred EEecccCCCCceeeeeeeeecCCCCCCCCCCCCCCCCcccCCCCcccceEEeccchhhhhc
Q 029937 124 VHFGVNSGATRFAIEQQAVNEATFRCPDEMGWKPQKVPIFPADGEISRVREVEMISLFLCA 184 (185)
Q Consensus 124 IHlGva~~~~~i~LEr~A~N~~~~~~pD~~G~~p~~~~I~~~gp~~~~~~~T~Lpl~~l~~ 184 (185)
||+|++++++.|++||+|+|..+|++|||+|++|.+++|.++|| .+|+|+||+++|++
T Consensus 62 i~~G~a~~r~~i~~Er~A~N~~~~~~pDn~G~~p~~~~i~~~gp---~~~~t~lp~~~iv~ 119 (192)
T 2ebj_A 62 LHLGLAEDRPVLTLERLAVNLLDFPRPDNRGRVLEDLPIVPGGP---LALPARFPVKPVLA 119 (192)
T ss_dssp EEEEECTTCSSEEEECEEESCBCCSSCCTTCCCCCSBCSSTTSC---SEEECBSCHHHHHH
T ss_pred EEeccCCCCceEEeEEEEEcCCCccCCCCCCCCCCCCceeCCCC---ceeEcCCCHHHHHH
Confidence 99999999999999999999989999999999999999999997 57999999999864
No 10
>4fc5_A TON_0340, putative uncharacterized protein; unknown function; 2.30A {Thermococcus onnurineus}
Probab=54.27 E-value=37 Score=28.58 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=14.0
Q ss_pred eeeeeeeeecCCCCCCCCCCCCC
Q 029937 135 FAIEQQAVNEATFRCPDEMGWKP 157 (185)
Q Consensus 135 i~LEr~A~N~~~~~~pD~~G~~p 157 (185)
|.|||.+.|. +-..-.+.|.-.
T Consensus 112 IaIERpGra~-dG~y~nmrG~dI 133 (270)
T 4fc5_A 112 ISVETPGRAA-DGRYYSMSALEI 133 (270)
T ss_dssp EEESCBCCBT-TSCCBCTTCCBC
T ss_pred EEEccCcCCC-CCCcccCcCCcC
Confidence 7889988884 444545555433
No 11
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=40.75 E-value=45 Score=25.63 Aligned_cols=82 Identities=9% Similarity=0.103 Sum_probs=46.3
Q ss_pred ceEEEEEcccCCCCCCCChHHH-HHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937 42 AVTIHVTGFKKFHGVSENPTET-IVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (185)
Q Consensus 42 ~~~ILITGFgPF~g~~~NPS~~-iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P 120 (185)
.+-|+.||=+...|...|.+.. |++.|.+ +...|. .. ...++|=..+...+. |.++++ ..+.
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~-l~~~G~----~v-~~~iv~Dd~~~I~~~----l~~~~~-------~~~~ 69 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKD-VIITPF----EV-EYRVIPDERDLIEKT----LIELAD-------EKGC 69 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHH-HBCSCC----EE-EEEEECSCHHHHHHH----HHHHHH-------TSCC
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHH-HHhCCC----EE-EEEEcCCCHHHHHHH----HHHHHh-------cCCC
Confidence 4678999999888877777654 4444431 112344 11 233555444444444 455553 3368
Q ss_pred cEEEEecccC-CCCceeeeee
Q 029937 121 IIWVHFGVNS-GATRFAIEQQ 140 (185)
Q Consensus 121 dlvIHlGva~-~~~~i~LEr~ 140 (185)
|+||-.|=.+ +..-++.|-+
T Consensus 70 DlVittGG~g~g~~D~t~ea~ 90 (178)
T 2pbq_A 70 SLILTTGGTGPAPRDVTPEAT 90 (178)
T ss_dssp SEEEEESCCSSSTTCCHHHHH
T ss_pred CEEEECCCCCCCCCCchHHHH
Confidence 9999887544 3344544433
No 12
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=36.28 E-value=29 Score=28.64 Aligned_cols=29 Identities=14% Similarity=0.225 Sum_probs=20.5
Q ss_pred CCceEEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 40 PPAVTIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 40 ~~~~~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
....+|++++.+ .+|+ .+|...+++.|.+
T Consensus 18 ~~~MrIl~~~~~-~~Gh-~~~~~~la~~L~~ 46 (412)
T 3otg_A 18 GRHMRVLFASLG-THGH-TYPLLPLATAARA 46 (412)
T ss_dssp CCSCEEEEECCS-SHHH-HGGGHHHHHHHHH
T ss_pred cceeEEEEEcCC-Cccc-HHHHHHHHHHHHH
Confidence 334489888855 4444 6788889999876
No 13
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=35.52 E-value=50 Score=27.28 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=20.9
Q ss_pred CceEEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 41 PAVTIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 41 ~~~~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
++.+|+++.++-+ |+ .+|...+++.|.+
T Consensus 19 ~m~rIl~~~~~~~-GH-v~p~l~La~~L~~ 46 (415)
T 3rsc_A 19 HMAHLLIVNVASH-GL-ILPTLTVVTELVR 46 (415)
T ss_dssp CCCEEEEECCSCH-HH-HGGGHHHHHHHHH
T ss_pred cCCEEEEEeCCCc-cc-cccHHHHHHHHHH
Confidence 3448999887633 33 6899999999986
No 14
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0
Probab=30.88 E-value=84 Score=25.14 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=9.4
Q ss_pred CCCCcEEEEecc
Q 029937 117 NSRRIIWVHFGV 128 (185)
Q Consensus 117 ~~~PdlvIHlGv 128 (185)
..++|+|||+.-
T Consensus 76 ~~~~d~vih~A~ 87 (341)
T 3enk_A 76 AHPITAAIHFAA 87 (341)
T ss_dssp HSCCCEEEECCC
T ss_pred ccCCcEEEECcc
Confidence 347999999864
No 15
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=27.42 E-value=77 Score=25.74 Aligned_cols=25 Identities=28% Similarity=0.388 Sum_probs=19.5
Q ss_pred EEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 44 TIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 44 ~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
+|+++.++- .|| .||...+++.|.+
T Consensus 6 ~il~~~~~~-~Gh-v~~~~~La~~L~~ 30 (402)
T 3ia7_A 6 HILFANVQG-HGH-VYPSLGLVSELAR 30 (402)
T ss_dssp EEEEECCSS-HHH-HHHHHHHHHHHHH
T ss_pred EEEEEeCCC-Ccc-cccHHHHHHHHHh
Confidence 898888763 344 5899999999986
No 16
>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}
Probab=26.86 E-value=69 Score=24.93 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=13.7
Q ss_pred HHHhhcccCCCCCCCCCcEEEEeccc
Q 029937 104 LQSAINEKDSESANSRRIIWVHFGVN 129 (185)
Q Consensus 104 L~~~~~~~~~~~~~~~PdlvIHlGva 129 (185)
+.++++ ..++|+|||+.-.
T Consensus 53 ~~~~~~-------~~~~d~Vih~A~~ 71 (319)
T 4b8w_A 53 TRALFE-------KVQPTHVIHLAAM 71 (319)
T ss_dssp HHHHHH-------HSCCSEEEECCCC
T ss_pred HHHHHh-------hcCCCEEEECcee
Confidence 456665 4579999999654
No 17
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=23.92 E-value=52 Score=27.18 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=19.0
Q ss_pred eEEEEEcccCCCCCCCChHHHHHHHHHH
Q 029937 43 VTIHVTGFKKFHGVSENPTETIVSNLRE 70 (185)
Q Consensus 43 ~~ILITGFgPF~g~~~NPS~~iv~~L~~ 70 (185)
.+|+++..+ +.|+ .||...++++|.+
T Consensus 16 MrIl~~~~~-~~gh-~~~~~~La~~L~~ 41 (398)
T 4fzr_A 16 MRILVIAGC-SEGF-VMPLVPLSWALRA 41 (398)
T ss_dssp CEEEEECCS-SHHH-HGGGHHHHHHHHH
T ss_pred eEEEEEcCC-Ccch-HHHHHHHHHHHHH
Confidence 489887665 3333 6888889999876
No 18
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=20.40 E-value=2.7e+02 Score=20.74 Aligned_cols=78 Identities=12% Similarity=0.096 Sum_probs=42.8
Q ss_pred ceEEEEEcccCCCCCCCChH-HHHHHHHHHHHhhCCCCcceecceeeEeeccccccchhHHHHHHHhhcccCCCCCCCCC
Q 029937 42 AVTIHVTGFKKFHGVSENPT-ETIVSNLREYMKKKGMPKGLILGSCNILETAGHGAVAPLYQTLQSAINEKDSESANSRR 120 (185)
Q Consensus 42 ~~~ILITGFgPF~g~~~NPS-~~iv~~L~~~~~~~~~~~~~~~v~~~~LPVsy~~v~~~l~~~L~~~~~~~~~~~~~~~P 120 (185)
.+-|+.||=+- +...|.+ ..|++.|.+. |. ......++|=..+...+. |.++++ ..+.
T Consensus 15 rv~Ii~tGdEl--g~i~Dsn~~~l~~~L~~~----G~----~v~~~~iv~Dd~~~i~~~----l~~~~~-------~~~~ 73 (169)
T 1y5e_A 15 RCKIVTISDTR--TEETDKSGQLLHELLKEA----GH----KVTSYEIVKDDKESIQQA----VLAGYH-------KEDV 73 (169)
T ss_dssp EEEEEEECSSC--CTTTCHHHHHHHHHHHHH----TC----EEEEEEEECSSHHHHHHH----HHHHHT-------CTTC
T ss_pred EEEEEEEcCcc--CeeccChHHHHHHHHHHC----CC----eEeEEEEeCCCHHHHHHH----HHHHHh-------cCCC
Confidence 45689999887 4455554 4455666543 43 122233455444444443 455553 3468
Q ss_pred cEEEEecccC-CCCceeeeee
Q 029937 121 IIWVHFGVNS-GATRFAIEQQ 140 (185)
Q Consensus 121 dlvIHlGva~-~~~~i~LEr~ 140 (185)
|+||-.|=.+ +.+-++.|-.
T Consensus 74 DlVittGG~g~g~~D~t~ea~ 94 (169)
T 1y5e_A 74 DVVLTNGGTGITKRDVTIEAV 94 (169)
T ss_dssp SEEEEECCCSSSTTCCHHHHH
T ss_pred CEEEEcCCCCCCCCCCcHHHH
Confidence 9999886543 4445554444
Done!