Query 029938
Match_columns 185
No_of_seqs 123 out of 1293
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0868 Glutathione S-transfer 100.0 2.3E-32 4.9E-37 189.5 14.4 155 20-176 3-158 (217)
2 PRK15113 glutathione S-transfe 100.0 2.5E-29 5.4E-34 187.0 16.5 157 18-176 1-162 (214)
3 PRK09481 sspA stringent starva 100.0 8.7E-28 1.9E-32 178.3 17.7 143 21-176 9-151 (211)
4 PLN02473 glutathione S-transfe 100.0 3.8E-27 8.3E-32 175.2 18.4 152 22-176 2-159 (214)
5 TIGR01262 maiA maleylacetoacet 100.0 5.8E-27 1.3E-31 173.6 17.4 152 24-176 1-155 (210)
6 KOG0406 Glutathione S-transfer 100.0 1.4E-26 2.9E-31 169.9 16.9 138 21-168 8-147 (231)
7 COG0625 Gst Glutathione S-tran 99.9 4.8E-26 1E-30 169.0 16.5 150 23-176 1-155 (211)
8 PRK13972 GSH-dependent disulfi 99.9 1.3E-26 2.9E-31 172.4 13.4 148 23-176 2-156 (215)
9 PLN02395 glutathione S-transfe 99.9 1.4E-25 3.1E-30 166.8 18.2 151 22-176 2-158 (215)
10 PRK11752 putative S-transferas 99.9 1.5E-24 3.3E-29 165.9 18.8 149 21-176 43-202 (264)
11 PRK10357 putative glutathione 99.9 1E-24 2.2E-29 160.8 16.1 142 23-168 1-143 (202)
12 PRK10542 glutathionine S-trans 99.9 7.4E-25 1.6E-29 161.3 15.1 145 23-176 1-148 (201)
13 KOG0867 Glutathione S-transfer 99.9 6E-25 1.3E-29 164.4 13.5 147 22-169 2-152 (226)
14 PTZ00057 glutathione s-transfe 99.9 8.1E-22 1.8E-26 145.7 17.9 139 21-176 3-149 (205)
15 PRK10387 glutaredoxin 2; Provi 99.9 9.8E-22 2.1E-26 145.6 13.2 143 23-176 1-165 (210)
16 KOG1695 Glutathione S-transfer 99.9 7.6E-21 1.7E-25 138.6 15.1 148 20-176 1-149 (206)
17 PLN02378 glutathione S-transfe 99.9 5.9E-21 1.3E-25 141.9 14.5 128 28-176 17-144 (213)
18 cd03052 GST_N_GDAP1 GST_N fami 99.9 2.3E-21 4.9E-26 120.1 8.6 73 23-95 1-73 (73)
19 TIGR00862 O-ClC intracellular 99.9 7.6E-20 1.7E-24 137.0 17.2 123 28-168 16-141 (236)
20 TIGR02182 GRXB Glutaredoxin, G 99.9 1.7E-20 3.7E-25 139.0 13.1 138 24-169 1-160 (209)
21 PF13417 GST_N_3: Glutathione 99.8 7.8E-21 1.7E-25 118.5 9.1 74 25-101 1-74 (75)
22 cd03045 GST_N_Delta_Epsilon GS 99.8 1E-20 2.2E-25 117.6 8.9 74 23-96 1-74 (74)
23 cd03050 GST_N_Theta GST_N fami 99.8 2E-20 4.4E-25 116.9 9.6 76 23-98 1-76 (76)
24 cd03048 GST_N_Ure2p_like GST_N 99.8 2.5E-20 5.5E-25 117.9 9.8 77 22-99 1-80 (81)
25 cd03053 GST_N_Phi GST_N family 99.8 2.9E-20 6.3E-25 116.1 9.4 76 22-97 1-76 (76)
26 PLN02817 glutathione dehydroge 99.8 1.5E-19 3.2E-24 138.0 14.9 126 29-176 71-196 (265)
27 cd03059 GST_N_SspA GST_N famil 99.8 6.2E-20 1.3E-24 113.7 9.2 73 23-98 1-73 (73)
28 cd03058 GST_N_Tau GST_N family 99.8 9.8E-20 2.1E-24 113.2 9.2 73 23-98 1-74 (74)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 6.2E-20 1.3E-24 114.9 8.0 75 22-98 1-77 (77)
30 cd03047 GST_N_2 GST_N family, 99.8 9.2E-20 2E-24 113.0 8.6 73 23-95 1-73 (73)
31 cd03056 GST_N_4 GST_N family, 99.8 9.7E-20 2.1E-24 112.8 8.6 73 23-95 1-73 (73)
32 cd03057 GST_N_Beta GST_N famil 99.8 1.4E-19 3E-24 113.4 9.2 76 23-99 1-77 (77)
33 cd03061 GST_N_CLIC GST_N famil 99.8 2E-19 4.3E-24 114.9 8.9 70 29-101 20-89 (91)
34 cd03046 GST_N_GTT1_like GST_N 99.8 2.9E-19 6.4E-24 111.5 9.5 76 23-99 1-76 (76)
35 PF02798 GST_N: Glutathione S- 99.8 2.9E-19 6.3E-24 111.5 9.2 73 24-96 2-76 (76)
36 cd03042 GST_N_Zeta GST_N famil 99.8 2.2E-19 4.7E-24 111.2 8.5 73 23-95 1-73 (73)
37 cd03051 GST_N_GTT2_like GST_N 99.8 2.1E-19 4.5E-24 111.5 8.0 73 23-95 1-74 (74)
38 cd03044 GST_N_EF1Bgamma GST_N 99.8 2.6E-19 5.7E-24 111.5 8.4 72 24-96 2-74 (75)
39 cd03076 GST_N_Pi GST_N family, 99.8 1.8E-19 3.9E-24 111.7 7.4 72 23-97 2-73 (73)
40 cd03060 GST_N_Omega_like GST_N 99.8 1E-18 2.2E-23 107.8 8.6 68 24-94 2-70 (71)
41 cd03075 GST_N_Mu GST_N family, 99.8 9.8E-19 2.1E-23 110.7 8.6 75 24-98 2-82 (82)
42 cd03039 GST_N_Sigma_like GST_N 99.8 4.8E-19 1E-23 109.5 6.9 72 23-96 1-72 (72)
43 cd03037 GST_N_GRX2 GST_N famil 99.8 1.5E-18 3.3E-23 106.9 7.5 70 23-96 1-71 (71)
44 cd03077 GST_N_Alpha GST_N fami 99.8 4.1E-18 9E-23 107.1 8.9 72 22-99 1-77 (79)
45 cd03055 GST_N_Omega GST_N fami 99.8 4.5E-18 9.8E-23 109.4 8.6 73 20-95 16-89 (89)
46 cd03049 GST_N_3 GST_N family, 99.8 3.3E-18 7.1E-23 106.0 7.6 70 23-95 1-73 (73)
47 cd03038 GST_N_etherase_LigE GS 99.8 5.4E-18 1.2E-22 107.9 8.4 70 29-99 14-84 (84)
48 PF13409 GST_N_2: Glutathione 99.7 9.9E-18 2.1E-22 102.9 8.0 68 30-97 1-70 (70)
49 cd03080 GST_N_Metaxin_like GST 99.7 2.2E-17 4.7E-22 102.8 8.6 68 22-99 1-75 (75)
50 cd03040 GST_N_mPGES2 GST_N fam 99.7 4.2E-17 9.1E-22 102.0 8.6 72 22-98 1-76 (77)
51 cd03043 GST_N_1 GST_N family, 99.7 8.1E-17 1.8E-21 99.7 8.6 68 27-95 6-73 (73)
52 cd00570 GST_N_family Glutathio 99.7 4.5E-16 9.7E-21 94.8 8.2 71 23-95 1-71 (71)
53 COG2999 GrxB Glutaredoxin 2 [P 99.7 5.4E-16 1.2E-20 108.1 8.7 123 23-153 1-124 (215)
54 KOG4420 Uncharacterized conser 99.7 1.6E-15 3.4E-20 111.8 10.8 94 22-115 26-120 (325)
55 cd03054 GST_N_Metaxin GST_N fa 99.6 2.3E-15 5E-20 92.9 7.9 64 24-97 2-72 (72)
56 PLN02907 glutamate-tRNA ligase 99.6 9.7E-14 2.1E-18 118.4 14.0 111 23-176 3-114 (722)
57 KOG1422 Intracellular Cl- chan 99.5 1.9E-12 4.1E-17 93.0 12.9 131 29-176 19-150 (221)
58 cd03079 GST_N_Metaxin2 GST_N f 99.4 3E-12 6.5E-17 78.7 7.1 64 23-97 11-74 (74)
59 TIGR02190 GlrX-dom Glutaredoxi 99.3 3.8E-11 8.2E-16 75.3 7.7 73 20-95 7-79 (79)
60 KOG3029 Glutathione S-transfer 99.2 6.5E-11 1.4E-15 88.6 8.9 69 22-95 90-158 (370)
61 PRK10638 glutaredoxin 3; Provi 99.1 2.4E-10 5.2E-15 72.3 7.3 74 21-96 2-75 (83)
62 cd03029 GRX_hybridPRX5 Glutare 99.1 1E-09 2.2E-14 67.4 7.7 71 22-95 2-72 (72)
63 cd03078 GST_N_Metaxin1_like GS 99.0 1.7E-09 3.7E-14 66.6 7.8 59 29-97 14-72 (73)
64 cd03027 GRX_DEP Glutaredoxin ( 98.9 1.2E-08 2.7E-13 62.8 6.8 69 22-92 2-70 (73)
65 PRK10329 glutaredoxin-like pro 98.8 2E-08 4.4E-13 63.1 6.5 61 22-85 2-62 (81)
66 KOG4244 Failed axon connection 98.8 4.8E-07 1.1E-11 67.7 14.6 93 20-125 43-142 (281)
67 TIGR02196 GlrX_YruB Glutaredox 98.8 2.4E-08 5.3E-13 61.0 6.7 71 22-94 1-73 (74)
68 cd02066 GRX_family Glutaredoxi 98.7 5.3E-08 1.2E-12 59.1 6.8 70 22-93 1-70 (72)
69 cd02976 NrdH NrdH-redoxin (Nrd 98.7 3.5E-08 7.6E-13 60.2 5.9 64 22-87 1-64 (73)
70 KOG2903 Predicted glutathione 98.7 2E-07 4.4E-12 69.4 10.4 150 19-177 34-230 (319)
71 COG0695 GrxC Glutaredoxin and 98.7 1.1E-07 2.4E-12 59.6 6.9 71 22-93 2-73 (80)
72 cd03418 GRX_GRXb_1_3_like Glut 98.7 1.1E-07 2.4E-12 58.6 6.8 72 22-95 1-73 (75)
73 TIGR02200 GlrX_actino Glutared 98.6 1.7E-07 3.8E-12 57.9 5.5 71 22-94 1-75 (77)
74 PRK11200 grxA glutaredoxin 1; 98.6 5.7E-07 1.2E-11 57.0 7.7 76 22-99 2-84 (85)
75 TIGR02181 GRX_bact Glutaredoxi 98.5 4.5E-07 9.8E-12 56.5 6.6 72 23-96 1-72 (79)
76 TIGR02189 GlrX-like_plant Glut 98.5 5.6E-07 1.2E-11 58.7 7.1 76 18-93 5-81 (99)
77 COG0435 ECM4 Predicted glutath 98.5 2.4E-06 5.1E-11 64.4 10.6 147 19-176 48-229 (324)
78 TIGR02194 GlrX_NrdH Glutaredox 98.5 4.6E-07 1E-11 55.5 5.8 57 23-82 1-57 (72)
79 PHA03050 glutaredoxin; Provisi 98.4 1.2E-06 2.6E-11 58.1 7.3 74 19-92 11-88 (108)
80 cd03419 GRX_GRXh_1_2_like Glut 98.4 1.3E-06 2.8E-11 54.7 7.3 75 22-96 1-76 (82)
81 PF00462 Glutaredoxin: Glutare 98.4 4.1E-07 8.9E-12 53.7 3.8 60 23-84 1-60 (60)
82 TIGR02183 GRXA Glutaredoxin, G 98.4 2.9E-06 6.4E-11 53.8 7.7 75 23-99 2-83 (86)
83 TIGR00365 monothiol glutaredox 98.2 1E-05 2.2E-10 52.6 7.3 75 18-94 9-88 (97)
84 TIGR02180 GRX_euk Glutaredoxin 98.2 9.3E-06 2E-10 50.9 6.8 74 23-96 1-77 (84)
85 cd03028 GRX_PICOT_like Glutare 98.1 1.7E-05 3.7E-10 50.7 7.2 74 19-94 6-84 (90)
86 PF10568 Tom37: Outer mitochon 98.1 2.3E-05 5.1E-10 47.9 6.8 56 29-94 12-71 (72)
87 PRK12759 bifunctional gluaredo 97.7 0.00016 3.5E-09 58.9 7.3 70 20-92 1-79 (410)
88 cd03191 GST_C_Zeta GST_C famil 97.7 0.00031 6.7E-09 47.1 7.3 67 110-176 2-70 (121)
89 PRK10824 glutaredoxin-4; Provi 97.6 0.0004 8.6E-09 46.4 7.0 73 20-94 14-91 (115)
90 KOG1752 Glutaredoxin and relat 97.6 0.00048 1E-08 45.1 7.1 80 17-96 10-90 (104)
91 KOG3028 Translocase of outer m 97.5 0.018 3.9E-07 44.6 16.2 93 30-132 16-109 (313)
92 KOG3027 Mitochondrial outer me 97.5 0.005 1.1E-07 44.9 12.1 86 29-126 32-118 (257)
93 cd03189 GST_C_GTT1_like GST_C 97.5 0.00054 1.2E-08 45.7 6.7 69 105-176 2-78 (119)
94 cd03031 GRX_GRX_like Glutaredo 97.4 0.00082 1.8E-08 46.9 6.9 70 22-93 1-80 (147)
95 cd03180 GST_C_2 GST_C family, 97.3 0.0015 3.3E-08 42.7 7.2 64 111-176 2-67 (110)
96 cd03178 GST_C_Ure2p_like GST_C 97.3 0.00099 2.1E-08 44.0 6.2 63 111-175 1-63 (113)
97 cd02973 TRX_GRX_like Thioredox 97.3 0.0015 3.2E-08 39.0 6.3 58 22-85 2-64 (67)
98 cd03181 GST_C_EFB1gamma GST_C 97.2 0.0018 3.8E-08 43.4 6.8 64 111-176 1-64 (123)
99 cd03188 GST_C_Beta GST_C famil 97.1 0.0011 2.3E-08 43.7 4.9 64 111-176 2-67 (114)
100 cd03182 GST_C_GTT2_like GST_C 97.1 0.0026 5.7E-08 42.2 6.6 67 108-176 1-73 (117)
101 PTZ00062 glutaredoxin; Provisi 97.1 0.0025 5.5E-08 47.0 6.9 71 20-92 112-187 (204)
102 cd03186 GST_C_SspA GST_N famil 96.7 0.0063 1.4E-07 39.7 5.9 58 110-176 2-59 (107)
103 PRK01655 spxA transcriptional 96.7 0.0029 6.3E-08 43.4 4.3 32 23-54 2-33 (131)
104 cd03036 ArsC_like Arsenate Red 96.7 0.0025 5.4E-08 42.4 3.8 33 23-55 1-33 (111)
105 cd03032 ArsC_Spx Arsenate Redu 96.7 0.0031 6.7E-08 42.2 4.3 32 23-54 2-33 (115)
106 cd03187 GST_C_Phi GST_C family 96.7 0.0072 1.6E-07 40.0 6.0 64 111-176 2-69 (118)
107 COG4545 Glutaredoxin-related p 96.6 0.0092 2E-07 36.2 5.5 65 21-85 2-77 (85)
108 cd02977 ArsC_family Arsenate R 96.6 0.0035 7.7E-08 41.1 4.1 32 23-54 1-32 (105)
109 cd03177 GST_C_Delta_Epsilon GS 96.6 0.009 1.9E-07 39.8 6.0 61 111-176 2-62 (118)
110 cd03183 GST_C_Theta GST_C fami 96.6 0.011 2.3E-07 39.8 6.5 64 112-176 2-70 (126)
111 cd03196 GST_C_5 GST_C family, 96.5 0.0059 1.3E-07 40.7 4.7 63 108-176 3-65 (115)
112 cd03185 GST_C_Tau GST_C family 96.5 0.0088 1.9E-07 40.2 5.5 58 110-176 2-59 (126)
113 cd03030 GRX_SH3BGR Glutaredoxi 96.4 0.022 4.7E-07 36.5 6.7 68 23-92 2-79 (92)
114 cd03179 GST_C_1 GST_C family, 96.4 0.003 6.6E-08 40.9 2.7 64 111-176 2-67 (105)
115 cd03190 GST_C_ECM4_like GST_C 96.4 0.021 4.5E-07 39.6 7.0 59 110-176 3-61 (142)
116 cd03200 GST_C_JTV1 GST_C famil 96.3 0.0078 1.7E-07 38.8 4.3 59 91-176 1-59 (96)
117 PRK12559 transcriptional regul 96.3 0.008 1.7E-07 41.2 4.5 34 22-55 1-34 (131)
118 PRK13344 spxA transcriptional 96.2 0.0087 1.9E-07 41.1 4.3 32 23-54 2-33 (132)
119 PRK10026 arsenate reductase; P 96.2 0.01 2.2E-07 41.2 4.5 34 21-54 2-35 (141)
120 cd03184 GST_C_Omega GST_C fami 96.2 0.014 3.1E-07 39.2 5.2 57 111-176 2-58 (124)
121 TIGR01617 arsC_related transcr 96.1 0.0092 2E-07 40.0 4.0 32 23-54 1-32 (117)
122 PF14834 GST_C_4: Glutathione 96.0 0.023 5E-07 37.6 5.4 72 108-180 1-73 (117)
123 cd03195 GST_C_4 GST_C family, 96.0 0.007 1.5E-07 40.3 3.1 65 110-176 2-67 (114)
124 PF05768 DUF836: Glutaredoxin- 96.0 0.065 1.4E-06 33.3 7.0 55 22-81 1-57 (81)
125 cd03035 ArsC_Yffb Arsenate Red 95.9 0.014 3E-07 38.4 4.0 32 23-54 1-32 (105)
126 cd03210 GST_C_Pi GST_C family, 95.9 0.046 1E-06 36.9 6.7 60 110-176 2-62 (126)
127 COG1393 ArsC Arsenate reductas 95.9 0.018 3.9E-07 38.6 4.4 33 22-54 2-34 (117)
128 cd03033 ArsC_15kD Arsenate Red 95.9 0.016 3.5E-07 38.6 4.2 32 23-54 2-33 (113)
129 cd03208 GST_C_Alpha GST_C fami 95.6 0.047 1E-06 37.6 5.9 63 111-176 3-65 (137)
130 COG0278 Glutaredoxin-related p 95.5 0.099 2.1E-06 33.7 6.5 74 20-95 14-93 (105)
131 PRK10853 putative reductase; P 95.3 0.031 6.8E-07 37.5 4.1 32 23-54 2-33 (118)
132 TIGR01616 nitro_assoc nitrogen 95.2 0.039 8.4E-07 37.5 4.3 33 22-54 2-34 (126)
133 TIGR00412 redox_disulf_2 small 95.1 0.23 4.9E-06 30.4 7.2 56 22-85 2-61 (76)
134 cd03192 GST_C_Sigma_like GST_C 95.1 0.086 1.9E-06 34.0 5.6 64 111-176 2-65 (104)
135 TIGR00411 redox_disulf_1 small 95.1 0.17 3.7E-06 31.0 6.7 57 22-82 2-62 (82)
136 cd03205 GST_C_6 GST_C family, 94.5 0.14 3E-06 32.8 5.4 60 116-175 2-63 (98)
137 cd03026 AhpF_NTD_C TRX-GRX-lik 94.3 0.26 5.6E-06 31.2 6.1 58 22-85 15-77 (89)
138 cd03206 GST_C_7 GST_C family, 94.1 0.067 1.5E-06 34.4 3.3 56 116-176 2-57 (100)
139 PF14497 GST_C_3: Glutathione 94.1 0.015 3.2E-07 37.5 0.1 59 109-176 3-61 (99)
140 PHA02125 thioredoxin-like prot 94.0 0.3 6.5E-06 29.7 5.9 51 23-79 2-52 (75)
141 cd03034 ArsC_ArsC Arsenate Red 94.0 0.1 2.2E-06 34.7 4.0 32 23-54 1-32 (112)
142 TIGR00014 arsC arsenate reduct 94.0 0.1 2.2E-06 34.8 4.0 32 23-54 1-32 (114)
143 cd03203 GST_C_Lambda GST_C fam 93.6 0.47 1E-05 31.7 6.7 56 108-176 1-57 (120)
144 cd01659 TRX_superfamily Thiore 93.2 0.33 7.2E-06 27.0 5.0 53 23-78 1-58 (69)
145 cd00299 GST_C_family Glutathio 93.2 0.096 2.1E-06 33.0 2.7 54 116-169 2-55 (100)
146 PF11287 DUF3088: Protein of u 92.9 0.48 1E-05 31.3 5.7 67 30-99 23-108 (112)
147 cd03209 GST_C_Mu GST_C family, 90.8 0.76 1.6E-05 30.6 5.1 58 111-176 2-59 (121)
148 PF13410 GST_C_2: Glutathione 90.1 0.68 1.5E-05 27.3 3.9 25 145-169 1-25 (69)
149 PF00043 GST_C: Glutathione S- 89.0 1 2.2E-05 28.2 4.4 31 144-176 22-52 (95)
150 PF13192 Thioredoxin_3: Thiore 89.0 3.5 7.5E-05 25.0 6.6 58 22-87 2-63 (76)
151 PF04908 SH3BGR: SH3-binding, 88.7 1 2.3E-05 29.2 4.2 67 23-91 3-84 (99)
152 cd03194 GST_C_3 GST_C family, 88.6 0.43 9.4E-06 31.6 2.5 30 147-176 38-68 (114)
153 cd03207 GST_C_8 GST_C family, 87.1 0.35 7.6E-06 31.0 1.3 53 116-176 2-54 (103)
154 PF03960 ArsC: ArsC family; I 85.7 1.1 2.4E-05 29.4 3.2 29 26-54 1-29 (110)
155 PF09635 MetRS-N: MetRS-N bind 85.1 0.58 1.3E-05 31.4 1.6 27 73-99 35-63 (122)
156 cd03199 GST_C_GRX2 GST_C famil 83.0 1 2.2E-05 30.7 2.1 16 151-166 61-76 (128)
157 cd03198 GST_C_CLIC GST_C famil 82.3 3.4 7.4E-05 28.4 4.5 26 143-168 22-47 (134)
158 COG3011 Predicted thiol-disulf 81.8 13 0.00029 25.6 7.2 79 18-98 5-87 (137)
159 cd02949 TRX_NTR TRX domain, no 81.3 9.9 0.00021 24.0 6.3 60 21-84 15-80 (97)
160 cd03204 GST_C_GDAP1 GST_C fami 80.5 3.9 8.4E-05 27.1 4.2 35 142-176 21-63 (111)
161 KOG0911 Glutaredoxin-related p 79.2 4.8 0.0001 30.1 4.6 74 20-95 138-216 (227)
162 TIGR03143 AhpF_homolog putativ 76.4 9.6 0.00021 32.6 6.4 58 22-85 479-541 (555)
163 cd02947 TRX_family TRX family; 76.1 14 0.00031 22.1 6.8 56 21-82 12-74 (93)
164 cd02953 DsbDgamma DsbD gamma f 74.2 10 0.00023 24.1 4.9 57 21-78 13-77 (104)
165 PF00085 Thioredoxin: Thioredo 74.0 19 0.0004 22.4 9.4 72 20-96 18-102 (103)
166 PF04399 Glutaredoxin2_C: Glut 74.0 1.2 2.6E-05 30.6 0.3 18 150-167 59-76 (132)
167 cd02989 Phd_like_TxnDC9 Phosdu 73.5 23 0.00049 23.2 7.3 60 22-85 25-89 (113)
168 cd02975 PfPDO_like_N Pyrococcu 73.2 16 0.00035 23.9 5.7 52 23-78 25-80 (113)
169 cd03202 GST_C_etherase_LigE GS 71.7 19 0.0004 24.0 5.8 27 148-176 56-82 (124)
170 TIGR01295 PedC_BrcD bacterioci 71.1 28 0.00061 23.2 7.6 32 23-54 27-62 (122)
171 PRK15317 alkyl hydroperoxide r 68.2 6.8 0.00015 33.2 3.6 72 22-97 119-197 (517)
172 TIGR03140 AhpF alkyl hydropero 67.8 6.1 0.00013 33.4 3.3 71 22-96 120-197 (515)
173 PF04134 DUF393: Protein of un 63.2 27 0.00057 22.7 5.1 72 25-97 1-77 (114)
174 TIGR02187 GlrX_arch Glutaredox 62.8 54 0.0012 24.1 7.2 53 22-78 136-191 (215)
175 PF01323 DSBA: DSBA-like thior 62.0 16 0.00036 26.0 4.3 35 22-56 1-40 (193)
176 TIGR02681 phage_pRha phage reg 60.6 9.9 0.00021 25.1 2.6 26 74-99 2-28 (108)
177 cd03201 GST_C_DHAR GST_C famil 58.7 31 0.00068 22.9 4.9 27 149-176 29-55 (121)
178 KOG3425 Uncharacterized conser 57.1 58 0.0013 22.0 5.8 65 29-97 43-122 (128)
179 PHA03075 glutaredoxin-like pro 56.8 24 0.00051 23.6 3.8 67 21-98 3-70 (123)
180 cd03021 DsbA_GSTK DsbA family, 56.4 22 0.00048 26.1 4.2 35 21-55 1-39 (209)
181 PF06110 DUF953: Eukaryotic pr 56.1 26 0.00055 23.6 4.0 62 28-93 35-111 (119)
182 COG3019 Predicted metal-bindin 55.5 24 0.00052 24.5 3.8 73 20-98 25-104 (149)
183 TIGR02187 GlrX_arch Glutaredox 55.1 62 0.0013 23.8 6.4 57 22-82 22-88 (215)
184 PTZ00051 thioredoxin; Provisio 54.5 49 0.0011 20.4 6.2 57 23-83 22-83 (98)
185 cd03193 GST_C_Metaxin GST_C fa 53.0 26 0.00055 21.5 3.5 25 150-176 19-43 (88)
186 cd02963 TRX_DnaJ TRX domain, D 50.0 68 0.0015 20.7 6.8 59 21-83 26-91 (111)
187 cd02984 TRX_PICOT TRX domain, 49.5 60 0.0013 19.9 7.1 58 22-83 17-80 (97)
188 cd02978 KaiB_like KaiB-like fa 45.3 68 0.0015 19.5 4.3 53 22-78 3-60 (72)
189 COG3118 Thioredoxin domain-con 43.3 66 0.0014 25.4 5.0 74 21-99 45-131 (304)
190 PRK09381 trxA thioredoxin; Pro 42.1 89 0.0019 19.8 7.2 59 21-84 23-88 (109)
191 PF04564 U-box: U-box domain; 40.6 55 0.0012 19.6 3.5 25 73-98 15-39 (73)
192 cd02962 TMX2 TMX2 family; comp 39.6 1.3E+02 0.0028 21.0 7.0 59 23-85 51-122 (152)
193 COG2761 FrnE Predicted dithiol 39.4 61 0.0013 24.4 4.2 29 20-48 5-37 (225)
194 KOG2824 Glutaredoxin-related p 39.3 86 0.0019 24.4 5.0 72 20-93 130-211 (281)
195 cd03003 PDI_a_ERdj5_N PDIa fam 36.2 1.1E+02 0.0024 19.1 6.3 56 22-82 21-83 (101)
196 cd03022 DsbA_HCCA_Iso DsbA fam 35.7 61 0.0013 22.9 3.7 32 23-54 1-36 (192)
197 PF09413 DUF2007: Domain of un 34.6 50 0.0011 19.2 2.6 30 24-53 2-31 (67)
198 cd02954 DIM1 Dim1 family; Dim1 34.3 1.4E+02 0.0031 19.8 6.3 58 23-84 18-81 (114)
199 cd03020 DsbA_DsbC_DsbG DsbA fa 34.1 83 0.0018 22.7 4.2 24 20-43 78-101 (197)
200 cd03004 PDI_a_ERdj5_C PDIa fam 34.1 1.2E+02 0.0026 18.9 4.9 54 21-78 21-78 (104)
201 cd03212 GST_C_Metaxin1_3 GST_C 34.0 58 0.0013 22.2 3.2 29 146-176 60-88 (137)
202 KOG2501 Thioredoxin, nucleored 33.7 1.1E+02 0.0023 21.8 4.4 35 23-57 36-78 (157)
203 PRK09266 hypothetical protein; 33.6 44 0.00096 25.5 2.8 61 40-100 200-260 (266)
204 cd03024 DsbA_FrnE DsbA family, 33.2 84 0.0018 22.5 4.1 33 23-55 1-41 (201)
205 PRK10996 thioredoxin 2; Provis 32.7 1.6E+02 0.0035 20.0 7.5 59 22-84 55-119 (139)
206 cd02959 ERp19 Endoplasmic reti 32.4 1.5E+02 0.0032 19.5 6.1 22 22-43 22-43 (117)
207 cd02956 ybbN ybbN protein fami 31.0 1.3E+02 0.0028 18.4 7.3 58 22-83 15-78 (96)
208 PRK10721 hypothetical protein; 30.9 1.2E+02 0.0025 18.1 3.5 17 84-100 5-21 (66)
209 COG5515 Uncharacterized conser 30.8 46 0.00099 19.5 1.8 22 22-43 2-27 (70)
210 PF13098 Thioredoxin_2: Thiore 30.5 41 0.00089 21.4 1.9 36 21-56 7-49 (112)
211 TIGR03412 iscX_yfhJ FeS assemb 30.2 1.2E+02 0.0027 17.9 3.7 20 85-106 3-22 (63)
212 cd02957 Phd_like Phosducin (Ph 30.2 95 0.0021 20.0 3.6 59 22-85 27-90 (113)
213 PRK11657 dsbG disulfide isomer 29.3 85 0.0018 23.9 3.7 21 22-42 120-140 (251)
214 PF09314 DUF1972: Domain of un 29.2 55 0.0012 23.8 2.5 20 80-99 154-173 (185)
215 cd04911 ACT_AKiii-YclM-BS_1 AC 29.1 68 0.0015 19.7 2.5 25 30-54 14-38 (76)
216 cd02951 SoxW SoxW family; SoxW 29.0 1.7E+02 0.0037 19.1 6.4 18 21-38 16-33 (125)
217 PF07511 DUF1525: Protein of u 28.7 73 0.0016 21.2 2.8 26 71-96 81-107 (114)
218 cd03025 DsbA_FrnE_like DsbA fa 28.6 1.1E+02 0.0023 21.7 4.0 33 22-54 2-40 (193)
219 cd03211 GST_C_Metaxin2 GST_C f 28.3 1.7E+02 0.0036 19.5 4.6 27 148-176 55-81 (126)
220 cd02948 TRX_NDPK TRX domain, T 26.7 94 0.002 19.6 3.1 57 22-83 20-83 (102)
221 PF05944 Phage_term_smal: Phag 26.7 1.9E+02 0.0041 19.8 4.6 29 143-171 17-45 (132)
222 PF15608 PELOTA_1: PELOTA RNA 26.3 1.7E+02 0.0037 19.0 4.1 29 23-51 58-86 (100)
223 PHA02278 thioredoxin-like prot 26.1 1.9E+02 0.004 18.6 7.3 62 23-84 18-85 (103)
224 PF08261 Carcinustatin: Carcin 26.0 27 0.00058 11.6 0.2 6 171-176 2-7 (8)
225 PRK10877 protein disulfide iso 24.3 62 0.0014 24.3 2.1 33 21-53 109-142 (232)
226 PF13462 Thioredoxin_4: Thiore 24.1 1.1E+02 0.0024 20.7 3.3 23 19-41 12-34 (162)
227 COG2975 Uncharacterized protei 23.6 1E+02 0.0022 17.9 2.3 36 84-123 3-38 (64)
228 cd02955 SSP411 TRX domain, SSP 23.6 2.4E+02 0.0051 18.9 5.6 61 23-87 19-97 (124)
229 TIGR01068 thioredoxin thioredo 23.3 1.8E+02 0.004 17.5 8.8 57 22-82 17-79 (101)
230 cd03023 DsbA_Com1_like DsbA fa 23.3 63 0.0014 21.7 1.9 21 20-40 6-26 (154)
231 PF10022 DUF2264: Uncharacteri 23.0 66 0.0014 26.1 2.1 89 75-169 99-191 (361)
232 cd00449 PLPDE_IV PyridoxaL 5'- 21.8 89 0.0019 23.5 2.6 58 40-97 196-255 (256)
233 cd02966 TlpA_like_family TlpA- 21.2 95 0.0021 19.1 2.3 22 20-41 20-41 (116)
234 TIGR01764 excise DNA binding d 21.2 1.4E+02 0.003 15.4 3.2 25 71-95 24-48 (49)
235 PTZ00443 Thioredoxin domain-co 21.1 3.7E+02 0.0079 20.2 10.9 75 22-100 55-141 (224)
236 PF09098 Dehyd-heme_bind: Quin 21.0 72 0.0016 22.8 1.7 19 81-99 48-68 (167)
237 cd02972 DsbA_family DsbA famil 20.9 1.9E+02 0.0041 17.2 3.6 22 23-44 1-22 (98)
238 cd02999 PDI_a_ERp44_like PDIa 20.8 1.4E+02 0.003 18.8 3.0 54 22-78 21-77 (100)
No 1
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-32 Score=189.51 Aligned_cols=155 Identities=49% Similarity=0.776 Sum_probs=142.3
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCC-CCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhC
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG-EQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (185)
+.+.+||++..|.+++|||++|+.+||+|+.++|++.++ .+...+|.++||+++||+|++||.+++||.||++||++.|
T Consensus 3 ~~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 3 AAKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred cccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 346899999999999999999999999999999999885 4556799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 99 PQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 99 ~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
|.++|+|. ++..||.+++...-+.+.++|.....+....+++.+..+ ..|+...+.+.|..+|++|+.+.|+|++|
T Consensus 83 P~ppLLP~-d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~-~~W~q~~ItkGF~ALEklL~~~aGkycvG 158 (217)
T KOG0868|consen 83 PDPPLLPK-DPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYG-DQWAQHFITKGFTALEKLLKSHAGKYCVG 158 (217)
T ss_pred CCCCCCCc-CHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchh-hHHHHHHHHHhHHHHHHHHHHccCCcccC
Confidence 99999999 999999999999999999999888888877766644434 88999999999999999999999999987
No 2
>PRK15113 glutathione S-transferase; Provisional
Probab=99.97 E-value=2.5e-29 Score=187.03 Aligned_cols=157 Identities=30% Similarity=0.302 Sum_probs=125.5
Q ss_pred CCCCceEEeecC--CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 18 SSSSKLVLYSYW--QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 18 ~~~~~~~Ly~~~--~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
|+.++++||+.+ .|++|++++++|+++|++|+.+.+++.++++..++|+++||.|+||+|+++|.+|+||.||++||+
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence 445679999965 799999999999999999999999998887788999999999999999999999999999999999
Q ss_pred HhCCCCC---CCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 029938 96 EKYPQRA---LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAK 172 (185)
Q Consensus 96 ~~~~~~~---l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~ 172 (185)
++++++. ++|. ++.+++++++|+.|..+.+.+.........+......+...+..++++.+.+..+|++|+++ +.
T Consensus 81 ~~~~~~~~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~~ 158 (214)
T PRK15113 81 ERFAPPAWERIYPA-DLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPG-QP 158 (214)
T ss_pred HHcCCCCccccCCC-CHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 9998755 9998 99999999999999987665432211101011111223334556778899999999999853 35
Q ss_pred eEee
Q 029938 173 LMCF 176 (185)
Q Consensus 173 ~~~g 176 (185)
|++|
T Consensus 159 ~l~G 162 (214)
T PRK15113 159 NLFG 162 (214)
T ss_pred EeeC
Confidence 6665
No 3
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=99.96 E-value=8.7e-28 Score=178.34 Aligned_cols=143 Identities=24% Similarity=0.351 Sum_probs=120.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ 100 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 100 (185)
++|+||+.+.|++|+++|++|+++|++|+.+.++.. +++++|+++||.|+||+|+++|.+|+||.||++||+++||.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~ 85 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKD---NLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPH 85 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcc---cCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCC
Confidence 358999999999999999999999999999999864 56789999999999999999999999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 101 RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 101 ~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
..|+|. ++.+++.+++|+.++...+...... .. .+.+...+.....+.+.+..+|++|++ ++|++|
T Consensus 86 ~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~l~~~l~~le~~L~~--~~~l~G 151 (211)
T PRK09481 86 PPLMPV-YPVARGESRLMMHRIEKDWYSLMNK----IV---NGSASEADAARKQLREELLAIAPVFGE--KPYFMS 151 (211)
T ss_pred CCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH----Hh---cCCHHHHHHHHHHHHHHHHHHHHHhcc--CCcccC
Confidence 889998 9999999999998876554332211 11 123455677788899999999999975 468775
No 4
>PLN02473 glutathione S-transferase
Probab=99.96 E-value=3.8e-27 Score=175.18 Aligned_cols=152 Identities=22% Similarity=0.230 Sum_probs=126.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC-
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ- 100 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~- 100 (185)
.|+||+.+.|++++|++++|+++|++|+.+.++...++...++++++||.|+||+|+++|.+|+||.||++||+++++.
T Consensus 2 ~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~~ 81 (214)
T PLN02473 2 VVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQ 81 (214)
T ss_pred ceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCCc
Confidence 5799999999999999999999999999999998877788999999999999999999999999999999999999975
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHH-HH---HhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEe
Q 029938 101 -RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLK-YI---EDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMC 175 (185)
Q Consensus 101 -~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~ 175 (185)
.+|+|. ++.+++++++|+.+..+.+.+.....+.. .+ .+...+.+..+....++.+.|+.+|++|+++ +|++
T Consensus 82 ~~~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~ 158 (214)
T PLN02473 82 GTDLLGK-TLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATN--RYLG 158 (214)
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccC--Cccc
Confidence 369999 99999999999999988776644332221 11 1122234566778889999999999999753 5666
Q ss_pred e
Q 029938 176 F 176 (185)
Q Consensus 176 g 176 (185)
|
T Consensus 159 G 159 (214)
T PLN02473 159 G 159 (214)
T ss_pred C
Confidence 4
No 5
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.95 E-value=5.8e-27 Score=173.65 Aligned_cols=152 Identities=49% Similarity=0.760 Sum_probs=123.8
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCC-CCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCCC
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRA 102 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~ 102 (185)
+||++..|++++++|++|+++|++|+.+.++... ++...++++++||.|++|+|+++|.+|+||.||++||++++++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 5898899999999999999999999999998743 355678899999999999999999999999999999999998878
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhh--cCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDK--FGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 103 l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++|. +..+++++++|+.++...+.+.....+....... ..++...+...+.+.+.|+.||++|++++|+|++|
T Consensus 81 l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 155 (210)
T TIGR01262 81 LLPA-DPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVG 155 (210)
T ss_pred CCCC-CHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeC
Confidence 9998 9999999999999987666543222222121111 12333456677789999999999999877789885
No 6
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.4e-26 Score=169.85 Aligned_cols=138 Identities=30% Similarity=0.379 Sum_probs=120.4
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhC-CCCccceEEeCCeeeecHHHHHHHHHHhCC
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (185)
+.++||++..|||++|++++|+++||+|+.+.+++. .++++++..| +.++||+|+++|..|+||..|++||++.++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~ 84 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWP 84 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhcc
Confidence 679999999999999999999999999999999987 4888999999 789999999999999999999999999999
Q ss_pred -CCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHh
Q 029938 100 -QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID 168 (185)
Q Consensus 100 -~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 168 (185)
+++++|. |+-+||.++.|..+++..+.......... ...+.++...+.+...|..+|+.|.+
T Consensus 85 ~~~~iLP~-DPy~Ra~arfwa~~id~~~~~~~~~~~~~------~~~e~~~~~~~e~~e~l~~lE~el~k 147 (231)
T KOG0406|consen 85 SGPPILPS-DPYERAQARFWAEYIDKKVFFVGRFVVAA------KGGEEQEAAKEELREALKVLEEELGK 147 (231)
T ss_pred CCCCCCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHhc
Confidence 5999999 99999999999999997665443322211 23345667788899999999999994
No 7
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.8e-26 Score=168.99 Aligned_cols=150 Identities=39% Similarity=0.462 Sum_probs=127.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCe-eeecHHHHHHHHHHhCCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV-VVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~-~l~eS~aI~~yL~~~~~~~ 101 (185)
++||+.+.||+|+|+++++.++|++|+.+.|+... +...++|+++||.|+||+|++++. +|+||.||++||+++||.+
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 58999999999999999999999999999999987 678899999999999999996654 9999999999999999976
Q ss_pred CCCCCCCHH---HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcC-chHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 102 ALLPAADPQ---QRALNLQAASIISSSMQPLHMLSLLKYIEDKFG-PDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 102 ~l~p~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++|. ++. +++.+.+|+.+....+.+.+............. .+...+...+.+.+.+..+|+.|+.+ +|++|
T Consensus 80 ~l~p~-~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 155 (211)
T COG0625 80 PLLPA-DPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADG--PYLAG 155 (211)
T ss_pred CcCCC-CchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccC--CcccC
Confidence 69998 774 888999999999888888776654443222222 46778889999999999999999973 45543
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.94 E-value=1.3e-26 Score=172.43 Aligned_cols=148 Identities=26% Similarity=0.295 Sum_probs=118.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe-----CC--eeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-----GD--VVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-----~g--~~l~eS~aI~~yL~ 95 (185)
++||+. .+++|++|+++|+++|++|+.+.+++..+++..++|+++||.|+||+|++ +| .+|+||.||++||+
T Consensus 2 ~~Ly~~-~~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL~ 80 (215)
T PRK13972 2 IDLYFA-PTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLA 80 (215)
T ss_pred eEEEEC-CCCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHHH
Confidence 799976 48999999999999999999999998877778899999999999999996 45 58999999999999
Q ss_pred HhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEe
Q 029938 96 EKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMC 175 (185)
Q Consensus 96 ~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~ 175 (185)
++++ .+.|. ++.+++++++|+.|..+.+.+.+.............++...+....++.+.|..+|++|+++ +|++
T Consensus 81 ~~~~--~l~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~ 155 (215)
T PRK13972 81 EKTG--LFLSH-ETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENS--PWLG 155 (215)
T ss_pred HhcC--CCCCC-CHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccC--cccc
Confidence 9986 46777 89999999999999988777654221100000111234556677788999999999999753 5666
Q ss_pred e
Q 029938 176 F 176 (185)
Q Consensus 176 g 176 (185)
|
T Consensus 156 G 156 (215)
T PRK13972 156 G 156 (215)
T ss_pred C
Confidence 4
No 9
>PLN02395 glutathione S-transferase
Probab=99.94 E-value=1.4e-25 Score=166.83 Aligned_cols=151 Identities=28% Similarity=0.316 Sum_probs=122.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC-
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ- 100 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~- 100 (185)
.++||+. .+++++|++++|+++|++|+.+.++...++..+++++++||.|+||+|+++|.+|+||.||++||+++++.
T Consensus 2 ~~~ly~~-~~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~~ 80 (215)
T PLN02395 2 VLKVYGP-AFASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQ 80 (215)
T ss_pred eEEEEcC-CcCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCCC
Confidence 3799984 55679999999999999999999998777778899999999999999999999999999999999999975
Q ss_pred -CCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHH-HH---hhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEe
Q 029938 101 -RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKY-IE---DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMC 175 (185)
Q Consensus 101 -~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~ 175 (185)
++++|. ++.+++++++|+.+....+.+.+....... +. +....++..+...+++.+.++.+|+.|+++ +|++
T Consensus 81 ~~~l~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~ 157 (215)
T PLN02395 81 GPDLLGK-TIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKS--KYLA 157 (215)
T ss_pred CcCcCCC-ChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCC--cccc
Confidence 369999 999999999999998877765443322221 11 122334556778889999999999999754 5666
Q ss_pred e
Q 029938 176 F 176 (185)
Q Consensus 176 g 176 (185)
|
T Consensus 158 G 158 (215)
T PLN02395 158 G 158 (215)
T ss_pred C
Confidence 4
No 10
>PRK11752 putative S-transferase; Provisional
Probab=99.93 E-value=1.5e-24 Score=165.87 Aligned_cols=149 Identities=26% Similarity=0.306 Sum_probs=117.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHc------CCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC----CeeeecHHHH
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLK------GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAI 90 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~aI 90 (185)
..|+||+. .|++|+||+++|+++ |++|+.+.|++..+++..++|+++||.|+||+|+++ |.+|+||.||
T Consensus 43 ~~~~Ly~~-~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AI 121 (264)
T PRK11752 43 HPLQLYSL-GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAI 121 (264)
T ss_pred CCeEEecC-CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHH
Confidence 36999985 699999999999997 899999999988777788999999999999999954 3799999999
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHH-hhcCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 029938 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIE-DKFGPDERLLWVQTHIEKGFLALEKLLIDF 169 (185)
Q Consensus 91 ~~yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 169 (185)
++||+++++ +|+|. ++.+++.+++|+.+....+.. ....+...+. .....+...+...+++.+.|+.+|++|+++
T Consensus 122 l~YL~~~~~--~L~P~-~~~era~v~~wl~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 122 LLYLAEKFG--AFLPK-DLAARTETLNWLFWQQGSAPF-LGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHhcC--CcCCC-CHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999997 49998 999999999999988765421 1111111111 111223455667788899999999999753
Q ss_pred cCceEee
Q 029938 170 AAKLMCF 176 (185)
Q Consensus 170 ~g~~~~g 176 (185)
+|++|
T Consensus 198 --~fl~G 202 (264)
T PRK11752 198 --EYIAG 202 (264)
T ss_pred --CCCCC
Confidence 56664
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.93 E-value=1e-24 Score=160.82 Aligned_cols=142 Identities=23% Similarity=0.249 Sum_probs=115.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
|+||+...||+++++|++|+++|++|+.+.++.+. ..+++.++||.|++|+|+ ++|.+++||.||++||++++++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 58999999999999999999999999999888763 345667789999999998 78899999999999999999877
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHh
Q 029938 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID 168 (185)
Q Consensus 102 ~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 168 (185)
.|+|. ++.+++++++|..+..+.+..................+...+..+..+.+.|+.+|++|.+
T Consensus 78 ~l~p~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~ 143 (202)
T PRK10357 78 AMLPR-DPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVD 143 (202)
T ss_pred CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 89998 9999999999998887666554332222212222233455667788999999999999975
No 12
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.93 E-value=7.4e-25 Score=161.33 Aligned_cols=145 Identities=25% Similarity=0.410 Sum_probs=117.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCC-CCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQ 100 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~ 100 (185)
|+||+.. ++++++++++|+++|++|+.+.|+..+++ ...++|.++||.|+||+|+ ++|.+|+||.||++||++++++
T Consensus 1 m~l~~~~-~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKP-GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred Cceeecc-cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 5899866 45899999999999999999999987543 3568899999999999998 6889999999999999999987
Q ss_pred CCCC-CCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 101 RALL-PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 101 ~~l~-p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
..++ |. ++.+++++++|+.+..+.+.+.+... +.. ...+...+...+.+.+.|..+|+.|++ ++|++|
T Consensus 80 ~~l~~p~-~~~~ra~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 148 (201)
T PRK10542 80 RQLLAPV-GSLSRYHTIEWLNYIATELHKGFTPL----FRP-DTPEEYKPTVRAQLEKKFQYVDEALAD--EQWICG 148 (201)
T ss_pred cccCCCC-CcHHHHHHHHHHHHHHhhhhhhhhhc----cCC-CChHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeC
Confidence 7766 55 78899999999999887776543322 111 123444567788899999999999975 367775
No 13
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6e-25 Score=164.37 Aligned_cols=147 Identities=37% Similarity=0.408 Sum_probs=130.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCC-C
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP-Q 100 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~-~ 100 (185)
+++||++..+++|+++.++++++|++|+.+.++...+++..++|+++||.++||+|+++|..++||.||+.||.++|. .
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~~ 81 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGPL 81 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999996 3
Q ss_pred CC-CCCCCCHHHHHHHHHHHHHHHcchhhH--HHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 029938 101 RA-LLPAADPQQRALNLQAASIISSSMQPL--HMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDF 169 (185)
Q Consensus 101 ~~-l~p~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 169 (185)
.. ++|. +..+++.+++|+.+..+.+.+. ....+.+......-.....+.....+.+.+..+|++|.++
T Consensus 82 ~~~l~p~-~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~ 152 (226)
T KOG0867|consen 82 GGILLPK-DLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQ 152 (226)
T ss_pred CcccCCc-CHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccC
Confidence 44 9999 9999999999999999999886 3444444333333366778889999999999999999984
No 14
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.90 E-value=8.1e-22 Score=145.71 Aligned_cols=139 Identities=16% Similarity=0.179 Sum_probs=100.0
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhh------h--hhCCCCccceEEeCCeeeecHHHHHH
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEF------E--ELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~------~--~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
.+++||+++.+++++++|++|+++|++|+.+.++. .. +++ . ..||+|+||+|+++|.+|+||.||++
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~----~~-~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE----NG-DAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc----cc-hHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 34899999999999999999999999999986642 11 233 2 47999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCc
Q 029938 93 YLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAK 172 (185)
Q Consensus 93 yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~ 172 (185)
||+++++ +.+. +..+++.++.......+..... .. .... .+...+...+.+++.|..||+.|++++|+
T Consensus 78 YLa~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~-----~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 145 (205)
T PTZ00057 78 YLSKKYK---ICGE-SELNEFYADMIFCGVQDIHYKF-NN--TNLF-----KQNETTFLNEELPKWSGYFENILKKNHCN 145 (205)
T ss_pred HHHHHcC---CCCC-CHHHHHHHHHHHHHHHHHHHHH-hh--hHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999997 5556 5555555544333222111111 11 0011 11223556788999999999999887778
Q ss_pred eEee
Q 029938 173 LMCF 176 (185)
Q Consensus 173 ~~~g 176 (185)
|++|
T Consensus 146 ~l~G 149 (205)
T PTZ00057 146 YFVG 149 (205)
T ss_pred eeeC
Confidence 9986
No 15
>PRK10387 glutaredoxin 2; Provisional
Probab=99.88 E-value=9.8e-22 Score=145.61 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=101.9
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
|+||++..||+|+|+|++|+++|++|+.+.++... ... ..+.||.++||+|+ ++|.+|+||.||++||+++|+.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~--~~~--~~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDD--EAT--PIRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCc--hhh--HHHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 68999999999999999999999999998886431 222 25689999999995 88999999999999999999865
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHH-Hh----------------hcCc-h---HHHHHHHHHHHHHHH
Q 029938 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYI-ED----------------KFGP-D---ERLLWVQTHIEKGFL 160 (185)
Q Consensus 102 ~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~----------------~~~~-~---~~~~~~~~~~~~~l~ 160 (185)
.+. . .+++.+++|+.+....+...+...+.... .. ..+. + ...+...+++++.|+
T Consensus 77 ~l~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 152 (210)
T PRK10387 77 LLT-G---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLR 152 (210)
T ss_pred cCC-C---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHH
Confidence 443 2 25788899988876555443222111000 00 0000 0 011356678999999
Q ss_pred HHHHHHHhccCceEee
Q 029938 161 ALEKLLIDFAAKLMCF 176 (185)
Q Consensus 161 ~le~~L~~~~g~~~~g 176 (185)
.+|++|++ +|++|
T Consensus 153 ~le~~L~~---~~l~G 165 (210)
T PRK10387 153 ALDPLIVK---PNAVN 165 (210)
T ss_pred HHHHHhcC---ccccC
Confidence 99999963 67754
No 16
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=7.6e-21 Score=138.59 Aligned_cols=148 Identities=18% Similarity=0.143 Sum_probs=120.3
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCC
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (185)
|+.++|+|+...++++.+|++++.+|++|+.+.+.... .+++.....|+|++|+|..||..|.+|.||++||+++|+
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~---~w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMED---AWEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeecccc---chhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999998652 255666668999999999999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHH-HHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 100 QRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLL-WVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 100 ~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+.++ ++.|.+.++...+-+.+.........+.....+ ..+...+ .......+.+..+++.|+.++.+|++|
T Consensus 78 ---l~Gk-t~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g--~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvG 149 (206)
T KOG1695|consen 78 ---LAGK-TEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAG--KSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVG 149 (206)
T ss_pred ---cCCC-CHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhc--cchhhhhhhhccchHHHHHHHHHHHHhCCCCeeec
Confidence 9999 999999999999888776655444333322111 1222222 667778899999999999988889996
No 17
>PLN02378 glutathione S-transferase DHAR1
Probab=99.87 E-value=5.9e-21 Score=141.90 Aligned_cols=128 Identities=26% Similarity=0.214 Sum_probs=96.3
Q ss_pred cCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCCCCCCCC
Q 029938 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAA 107 (185)
Q Consensus 28 ~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~ 107 (185)
+..||+|+|++++|+++|++|+.+.|++. .+.++|+++||.|+||+|+++|.+|+||.||++||+++|++..+ .
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~- 90 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--K- 90 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--C-
Confidence 35799999999999999999999999986 35678999999999999999999999999999999999987555 3
Q ss_pred CHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++.+++.++..+. ..+..+ .... .. .+.....+.+.|..+|++|+.++++|++|
T Consensus 91 ~~~~~a~i~~~~~-------~~~~~~----~~~~-~~---~~~~~~~~~~~l~~le~~L~~~~~~fl~G 144 (213)
T PLN02378 91 TPAEFASVGSNIF-------GTFGTF----LKSK-DS---NDGSEHALLVELEALENHLKSHDGPFIAG 144 (213)
T ss_pred CHHHHHHHHHHHH-------HHHHHH----HhcC-Ch---hhHHHHHHHHHHHHHHHHHhcCCCCCcCC
Confidence 5566776654322 111111 1111 11 12234567788999999998655678775
No 18
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.86 E-value=2.3e-21 Score=120.14 Aligned_cols=73 Identities=44% Similarity=0.584 Sum_probs=68.7
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
++||++..|++|+|+|++|+++|++|+.+.++...++.+.+++.++||.|++|+|+++|.+++||.||++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999987777788899999999999999999999999999999984
No 19
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.85 E-value=7.6e-20 Score=136.99 Aligned_cols=123 Identities=23% Similarity=0.270 Sum_probs=92.8
Q ss_pred cCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC---CCCC
Q 029938 28 YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ---RALL 104 (185)
Q Consensus 28 ~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~---~~l~ 104 (185)
...||+|+++|++|.++|++|+.+.+++. .++++|+++||.|+||+|+++|.+|+||.+|++||+++|+. +.+.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~---~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~ 92 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLK---RKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLS 92 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCC---CCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCC
Confidence 46899999999999999999999999987 45789999999999999999999999999999999999974 3455
Q ss_pred CCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHh
Q 029938 105 PAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID 168 (185)
Q Consensus 105 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~ 168 (185)
|. ++..++... .+.+.+..+ ... ..++..+...+.+.+.|+.||+.|..
T Consensus 93 p~-~~~~~~~~~--------~l~~~~~~~----~~~--~~~~~~~~~~~~l~~~l~~Le~~L~~ 141 (236)
T TIGR00862 93 PK-HPESNTAGL--------DIFAKFSAY----IKN--SNPEANDNLEKGLLKALKKLDDYLNS 141 (236)
T ss_pred CC-CHHHHHHHH--------HHHHHHHHH----HHc--CCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 65 554433221 011111111 111 22334455667799999999999974
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.85 E-value=1.7e-20 Score=139.02 Aligned_cols=138 Identities=18% Similarity=0.157 Sum_probs=96.9
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCCC
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRA 102 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~ 102 (185)
+||++..||+|+|||++|+++|++|+.+.+... ++. ...+.||.|++|+|+ ++|.+++||.+|++||+++||.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~--~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLND--DEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCC--cch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 589999999999999999999999998876532 222 336889999999998 889999999999999999998643
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHH-------------HHHh----hcCch----HHHHHHHHHHHHHHHH
Q 029938 103 LLPAADPQQRALNLQAASIISSSMQPLHMLSLLK-------------YIED----KFGPD----ERLLWVQTHIEKGFLA 161 (185)
Q Consensus 103 l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~----~~~~~----~~~~~~~~~~~~~l~~ 161 (185)
+.+. +++.+++|+.+....+...+.+.+.. .+.. ..+.. ...+...+.+++.|+.
T Consensus 77 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~ 152 (209)
T TIGR02182 77 LTGK----VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEE 152 (209)
T ss_pred CCCC----ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHH
Confidence 4332 46677888877665554332211110 0000 00000 0013456778999999
Q ss_pred HHHHHHhc
Q 029938 162 LEKLLIDF 169 (185)
Q Consensus 162 le~~L~~~ 169 (185)
+|++|+++
T Consensus 153 le~~L~~~ 160 (209)
T TIGR02182 153 LDKLIDGP 160 (209)
T ss_pred HHHHHhCc
Confidence 99999765
No 21
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.85 E-value=7.8e-21 Score=118.46 Aligned_cols=74 Identities=50% Similarity=0.710 Sum_probs=69.3
Q ss_pred EeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCC
Q 029938 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 25 Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
||++..||+|+|+|++|+++|++|+.+.++.. ...+++.++||.+++|+|+++|.+++||.+|++||+++|+++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE---EKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT---STSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc---cchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 79999999999999999999999999999966 357899999999999999999999999999999999999864
No 22
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=1e-20 Score=117.61 Aligned_cols=74 Identities=45% Similarity=0.585 Sum_probs=69.4
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
++||+++.||+|++++++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHhC
Confidence 58999999999999999999999999999999876666789999999999999999999999999999999974
No 23
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.84 E-value=2e-20 Score=116.88 Aligned_cols=76 Identities=45% Similarity=0.676 Sum_probs=70.5
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (185)
++||+++.|++|++++++|+++|++|+.+.++...++...+++.++||.+++|+|+++|.+++||.||++||+++|
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5799999999999999999999999999999987666667899999999999999999999999999999999875
No 24
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.84 E-value=2.5e-20 Score=117.86 Aligned_cols=77 Identities=44% Similarity=0.647 Sum_probs=70.4
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC---CeeeecHHHHHHHHHHhC
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG---DVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~---g~~l~eS~aI~~yL~~~~ 98 (185)
+++||+++. |+|+++|++|+++|++|+.+.++...++...+++.++||.+++|+|+++ |..|+||.||++||++++
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 379998765 9999999999999999999999987666678899999999999999976 899999999999999998
Q ss_pred C
Q 029938 99 P 99 (185)
Q Consensus 99 ~ 99 (185)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.84 E-value=2.9e-20 Score=116.12 Aligned_cols=76 Identities=46% Similarity=0.625 Sum_probs=69.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHh
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (185)
.++||+++.||+|+++|++|+++|++|+.+.++...++...+++.++||.+++|+|+++|..++||.||++||+++
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 3799999999999999999999999999999988666567789999999999999999999999999999999863
No 26
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.83 E-value=1.5e-19 Score=138.04 Aligned_cols=126 Identities=23% Similarity=0.240 Sum_probs=96.3
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCCCCCCCCC
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 108 (185)
..||+|+|++++|+++|++|+.+.+++. .+.++|+++||.|+||+|+++|.+|+||.+|++||++++|.+.+. +
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~---~ 144 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLA---T 144 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC---C
Confidence 4599999999999999999999999876 467889999999999999988899999999999999999976663 5
Q ss_pred HHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+.+++.+.+++.. .+.. .+... ++. +...+.+.+.|..+|+.|+++ |+|++|
T Consensus 145 ~~era~i~~~l~~-------~~~~----~~~~~--~~~--~~~~~~l~~~l~~LE~~L~~~-g~yl~G 196 (265)
T PLN02817 145 PPEKASVGSKIFS-------TFIG----FLKSK--DPG--DGTEQALLDELTSFDDYIKEN-GPFING 196 (265)
T ss_pred HHHHHHHHHHHHH-------HHHH----HhccC--Ccc--hHHHHHHHHHHHHHHHHHhcC-CCeeCC
Confidence 5778887765421 1111 11111 111 112356778899999999863 578875
No 27
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.83 E-value=6.2e-20 Score=113.70 Aligned_cols=73 Identities=40% Similarity=0.550 Sum_probs=67.8
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (185)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.||++||+++|
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 5899999999999999999999999999988865 467899999999999999999999999999999999875
No 28
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.82 E-value=9.8e-20 Score=113.18 Aligned_cols=73 Identities=36% Similarity=0.576 Sum_probs=67.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCC-CccceEEeCCeeeecHHHHHHHHHHhC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDGDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (185)
|+||++..||+|+|+|++|+++|++|+.+.++.. .+.++++++||. +++|+|+++|.+++||.||++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 5899999999999999999999999999988875 567889999995 999999999999999999999999864
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=6.2e-20 Score=114.94 Aligned_cols=75 Identities=29% Similarity=0.233 Sum_probs=66.1
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe--CCeeeecHHHHHHHHHHhC
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD--GDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~g~~l~eS~aI~~yL~~~~ 98 (185)
+++||+++.||+|+|++++|+++|++|+.+.+.. ++...+++++.||.+++|+|++ +|.+++||.+|++||+++|
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~--~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCPK--GSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECCC--ChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 3799999999999999999999999999987753 3335678999999999999995 4789999999999999875
No 30
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.82 E-value=9.2e-20 Score=113.01 Aligned_cols=73 Identities=38% Similarity=0.448 Sum_probs=67.2
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
++||+++.|++++++|++|+++|++|+.+.++...++...++++++||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999998876555677899999999999999999999999999999984
No 31
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=9.7e-20 Score=112.76 Aligned_cols=73 Identities=44% Similarity=0.649 Sum_probs=68.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
++||+++.||+|+++|++|+++|++|+.+.++...+++..+++.++||.+++|+|+++|..++||.||++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999886666678899999999999999999999999999999984
No 32
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.82 E-value=1.4e-19 Score=113.37 Aligned_cols=76 Identities=36% Similarity=0.467 Sum_probs=68.7
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC-CeeeecHHHHHHHHHHhCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 99 (185)
|+||+++.+ +++++|++|+++|++|+.+.++...++...++++++||.+++|+|+++ |..++||.||++||+++||
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589988755 689999999999999999999987766778999999999999999965 8999999999999999875
No 33
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.81 E-value=2e-19 Score=114.89 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=65.0
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCC
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
..||+|+|+|++|+++|++|+.+.+++. ...++|+++||.|++|+|+++|.+++||.+|++||+++++++
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5889999999999999999999999976 467899999999999999999999999999999999998754
No 34
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.81 E-value=2.9e-19 Score=111.50 Aligned_cols=76 Identities=49% Similarity=0.728 Sum_probs=68.8
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~ 99 (185)
++||+++ .++++++|++|+++|++|+.+.++...++...+++.++||.+++|+|+++|.+++||.||++||+++||
T Consensus 1 ~~l~~~~-~~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLP-RSRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCC-CCChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 4799876 478999999999999999999998765566788999999999999999999999999999999999875
No 35
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=2.9e-19 Score=111.54 Aligned_cols=73 Identities=45% Similarity=0.618 Sum_probs=64.3
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCC-CccceEEeC-CeeeecHHHHHHHHHH
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPL-HFVPVLVDG-DVVVSDSYAILLYLEE 96 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~-g~~l~eS~aI~~yL~~ 96 (185)
+|+++...++++++|++|+++|++|+.+.++...++++.+++.+.||. |++|+|+++ |..|+||.||++||++
T Consensus 2 ~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 2 TLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 455555666999999999999999999999998887778999999999 999999988 9999999999999985
No 36
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.81 E-value=2.2e-19 Score=111.21 Aligned_cols=73 Identities=55% Similarity=0.910 Sum_probs=68.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
|+||++..|++++++|++|+++|++|+.+.++...++...+++.+.||.+++|+|+++|.+++||.||++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999987666678899999999999999999999999999999984
No 37
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.80 E-value=2.1e-19 Score=111.48 Aligned_cols=73 Identities=44% Similarity=0.545 Sum_probs=66.8
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~ 95 (185)
|+||+.+.||+|+|+|++|+++|++|+.+.++...++...+++.+.||.+++|+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999998865555678899999999999999 67899999999999985
No 38
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.80 E-value=2.6e-19 Score=111.55 Aligned_cols=72 Identities=29% Similarity=0.359 Sum_probs=66.5
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe-CCeeeecHHHHHHHHHH
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEE 96 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~ 96 (185)
+||+++.|++++++|++|+++|++|+.+.++...+ ++.++++++||.+++|+|++ +|.+++||.||++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 79999999999999999999999999999997644 67889999999999999995 68999999999999986
No 39
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.80 E-value=1.8e-19 Score=111.70 Aligned_cols=72 Identities=22% Similarity=0.287 Sum_probs=65.3
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHh
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (185)
++||+++.|++|+++|++|+++|++|+.+.++.. ...++++++||.+++|+|+++|.+++||.||++||+++
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~~~ 73 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE---EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLGRK 73 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH---HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHhcC
Confidence 6999999999999999999999999999999763 34557889999999999999999999999999999863
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.79 E-value=1e-18 Score=107.75 Aligned_cols=68 Identities=32% Similarity=0.514 Sum_probs=62.9
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe-CCeeeecHHHHHHHH
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL 94 (185)
+||+...||+|+|++++|+++|++|+.+.++.. ...++++++||.+++|+|++ +|..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999876 35678999999999999996 599999999999997
No 41
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.78 E-value=9.8e-19 Score=110.70 Aligned_cols=75 Identities=25% Similarity=0.349 Sum_probs=64.4
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCC-Chhhhh-----hCCCCccceEEeCCeeeecHHHHHHHHHHh
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQF-SPEFEE-----LNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (185)
+||++..+++|+++|++|+++|++|+.+.+++..++.. .+++.+ .+|.++||+|+++|.+++||.||++||+++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa~~ 81 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIARK 81 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHhhc
Confidence 78999999999999999999999999999998765433 345542 229999999999999999999999999986
Q ss_pred C
Q 029938 98 Y 98 (185)
Q Consensus 98 ~ 98 (185)
+
T Consensus 82 ~ 82 (82)
T cd03075 82 H 82 (82)
T ss_pred C
Confidence 4
No 42
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.78 E-value=4.8e-19 Score=109.48 Aligned_cols=72 Identities=22% Similarity=0.219 Sum_probs=64.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
++||+++.|++|+++|++|+++|++|+.+.++... ...+++.+.||.+++|+|+++|..++||.||++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE--WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH--hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988642 2334588899999999999999999999999999974
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=1.5e-18 Score=106.90 Aligned_cols=70 Identities=19% Similarity=0.249 Sum_probs=60.6
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC-CeeeecHHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEE 96 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~ 96 (185)
|+||++..||+|+|+|++|+++|++|+.+.++.. ......+.+|.+++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~----~~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND----DEATPIRMIGAKQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC----chHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHhC
Confidence 5799999999999999999999999999888743 12244577999999999965 8999999999999974
No 44
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.76 E-value=4.1e-18 Score=107.11 Aligned_cols=72 Identities=25% Similarity=0.335 Sum_probs=62.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhh-----CCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEEL-----NPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
+++||+++.+++++++||+|+++|++|+.+.++.. +++.+. .|.+++|+|+++|.+++||.||++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 36899999999999999999999999999988743 222222 3689999999999999999999999999
Q ss_pred hCC
Q 029938 97 KYP 99 (185)
Q Consensus 97 ~~~ 99 (185)
+++
T Consensus 75 ~~~ 77 (79)
T cd03077 75 KYN 77 (79)
T ss_pred HcC
Confidence 986
No 45
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.76 E-value=4.5e-18 Score=109.36 Aligned_cols=73 Identities=30% Similarity=0.310 Sum_probs=65.7
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC-CeeeecHHHHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLE 95 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~ 95 (185)
.++++||+.+.||+|++++++|+++|++|+.+.++.. ...+++.+.||.+++|+|+++ |..++||.||++||+
T Consensus 16 ~~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 16 PGIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK---DKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CCcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC---CCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 4579999999999999999999999999999998865 345678899999999999965 899999999999985
No 46
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=3.3e-18 Score=105.98 Aligned_cols=70 Identities=29% Similarity=0.236 Sum_probs=63.8
Q ss_pred eEEeecCCCchHHHHHHHHHH--cCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKL--KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~ 95 (185)
++||++..||+|+|+|++|++ +|++|+.+.++.. ...+++++.||.+++|+|+ ++|..++||.||++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~---~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPW---SDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcc---cCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8899999988854 4678899999999999998 68899999999999985
No 47
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.76 E-value=5.4e-18 Score=107.87 Aligned_cols=70 Identities=40% Similarity=0.599 Sum_probs=61.4
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC-CeeeecHHHHHHHHHHhCC
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG-DVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~aI~~yL~~~~~ 99 (185)
..||+|+|+|++|+++|++|+.+.++....+...+++ ++||.+++|+|+++ |..++||.+|++||+++||
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 6899999999999999999999999876444344455 78999999999987 8999999999999999875
No 48
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.74 E-value=9.9e-18 Score=102.95 Aligned_cols=68 Identities=57% Similarity=0.747 Sum_probs=58.0
Q ss_pred CCchHHHHHHHHHHcCCCceEEEecCC-CCCCCChhhhhhCCCCccceEEe-CCeeeecHHHHHHHHHHh
Q 029938 30 QSSCSWRVRFALKLKGLIYEYKAVDLS-KGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 30 ~s~~~~~vr~~l~~~gi~~~~~~v~~~-~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~~ 97 (185)
.|||++|++++|+++|++|+...+... .+....+++.++||.++||+|++ +|.+++||.+|++||++.
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 599999999999999999999888543 24456689999999999999995 799999999999999873
No 49
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.73 E-value=2.2e-17 Score=102.83 Aligned_cols=68 Identities=29% Similarity=0.369 Sum_probs=60.8
Q ss_pred ceEEeecC-------CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHH
Q 029938 22 KLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~-------~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 94 (185)
+++||++. .||+|+|++++|+++|++|+.+.++. .+.||.+++|+|+++|.+++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 36899887 68999999999999999999887763 25799999999999999999999999999
Q ss_pred HHhCC
Q 029938 95 EEKYP 99 (185)
Q Consensus 95 ~~~~~ 99 (185)
+++|+
T Consensus 71 ~~~~~ 75 (75)
T cd03080 71 EEKYG 75 (75)
T ss_pred HHHcC
Confidence 99874
No 50
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.72 E-value=4.2e-17 Score=102.01 Aligned_cols=72 Identities=26% Similarity=0.315 Sum_probs=62.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeC----CeeeecHHHHHHHHHHh
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDG----DVVVSDSYAILLYLEEK 97 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~aI~~yL~~~ 97 (185)
+++||+++.||+|+++|++|+++|++|+.+.++.. ..++ ...+|.+++|+|+++ |.+++||.+|++||++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~----~~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~ 75 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPV----SRKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLKTY 75 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCch----hHHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHHHH
Confidence 48999999999999999999999999999988753 2223 356999999999944 79999999999999987
Q ss_pred C
Q 029938 98 Y 98 (185)
Q Consensus 98 ~ 98 (185)
.
T Consensus 76 ~ 76 (77)
T cd03040 76 L 76 (77)
T ss_pred c
Confidence 4
No 51
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.71 E-value=8.1e-17 Score=99.69 Aligned_cols=68 Identities=40% Similarity=0.418 Sum_probs=61.2
Q ss_pred ecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 27 SYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 27 ~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+...|++++++|++|+++|++|+.+.++...+ ...+++.++||.+++|+|+++|.+++||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 35789999999999999999999999987643 356899999999999999999999999999999984
No 52
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.67 E-value=4.5e-16 Score=94.83 Aligned_cols=71 Identities=55% Similarity=0.755 Sum_probs=62.6
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
++||+++.||+|+++|++|+++|++|+.+.++..... ..++.+.+|.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4899999999999999999999999999998865322 2257788999999999999999999999999984
No 53
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=5.4e-16 Score=108.12 Aligned_cols=123 Identities=18% Similarity=0.204 Sum_probs=87.5
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
|+||-+..||||.|+|+++..+|||++.+....++.+ ++ ..+-...+||+|+ +||..+.||..|+.|+++.++++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp--~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TP--IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCccc--Ch--hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 5899999999999999999999999998877765422 21 2234566899999 99999999999999999998754
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHH
Q 029938 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQT 153 (185)
Q Consensus 102 ~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (185)
-+-.. -+..++.|++.+.........+++...-..+...+++.+.+..
T Consensus 77 ~lt~~----~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~ 124 (215)
T COG2999 77 LLTGK----VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTD 124 (215)
T ss_pred hhccC----cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHh
Confidence 34333 3556777888777766665555544333333344444333333
No 54
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.65 E-value=1.6e-15 Score=111.81 Aligned_cols=94 Identities=37% Similarity=0.492 Sum_probs=83.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC-
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ- 100 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~- 100 (185)
.+.||+++.|--++|||++++++||+++...|++..+++..++|..+||.|.||||+++..+|+++.-|+.|+++++-+
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvErtf~ge 105 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVERTFTGE 105 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHHHhhccc
Confidence 3899999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCCHHHHHHH
Q 029938 101 RALLPAADPQQRALN 115 (185)
Q Consensus 101 ~~l~p~~~~~~~a~~ 115 (185)
..|.|..+..+..++
T Consensus 106 r~l~pe~~S~~~d~~ 120 (325)
T KOG4420|consen 106 RVLMPEVGSLQHDRV 120 (325)
T ss_pred ccccccccccccHHH
Confidence 557777343333333
No 55
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.62 E-value=2.3e-15 Score=92.86 Aligned_cols=64 Identities=27% Similarity=0.307 Sum_probs=56.7
Q ss_pred EEeecC-------CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 24 VLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 24 ~Ly~~~-------~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
+||.+. .||+|++++++|+++|++|+.+.++.. .++|.+++|+|+++|.++.||.+|++||++
T Consensus 2 ~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~~ 71 (72)
T cd03054 2 ELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLKK 71 (72)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHhh
Confidence 566655 899999999999999999999988743 178999999999999999999999999987
Q ss_pred h
Q 029938 97 K 97 (185)
Q Consensus 97 ~ 97 (185)
+
T Consensus 72 ~ 72 (72)
T cd03054 72 K 72 (72)
T ss_pred C
Confidence 4
No 56
>PLN02907 glutamate-tRNA ligase
Probab=99.55 E-value=9.7e-14 Score=118.42 Aligned_cols=111 Identities=12% Similarity=0.028 Sum_probs=90.9
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQR 101 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~ 101 (185)
++||+.+ ++++.+++++|++.|++|+.+. .+|.|++|+|+ ++|.+|+||.||++||++.++..
T Consensus 3 ~kLy~~~-~S~~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p~~ 66 (722)
T PLN02907 3 AKLSFPP-DSPPLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSASLP 66 (722)
T ss_pred EEEEECC-CCChHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCCCc
Confidence 7899754 4568889999999999998763 15899999999 68999999999999999999888
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 102 ALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 102 ~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.|+|. ++.+++++++|+.+...... . ..+.+.++.||++|+.+ +|++|
T Consensus 67 ~L~p~-d~~erAqV~qWL~~~~~~~~-----------------~-------~~l~~~L~~LE~~L~~r--tYLvG 114 (722)
T PLN02907 67 GFYGQ-DAFESSQVDEWLDYAPTFSS-----------------G-------SEFENACEYVDGYLASR--TFLVG 114 (722)
T ss_pred CCCCC-CHHHHHHHHHHHHHHhhccc-----------------H-------HHHHHHHHHHHHHhccC--CeecC
Confidence 89998 99999999999998764210 0 12456789999999764 57764
No 57
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.9e-12 Score=92.95 Aligned_cols=131 Identities=24% Similarity=0.196 Sum_probs=98.3
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCCCCCCCCCC
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 108 (185)
-.||+|+++.+.|.++|++|..+.|+.. .++++|+++.|.+++|+|..++..++||..|-++|.++++++.+--- .
T Consensus 19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~-~ 94 (221)
T KOG1422|consen 19 GDCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTL-A 94 (221)
T ss_pred CCChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCccc-C
Confidence 4799999999999999999999999987 47778889999999999999999999999999999999987554332 2
Q ss_pred HHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHh-ccCceEee
Q 029938 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID-FAAKLMCF 176 (185)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~g~~~~g 176 (185)
+.|.+.+-. .+...+..++. .+.+.+-+.....+-..|+.||+.|+. +.++|+.|
T Consensus 95 ~~E~asag~-------diF~kF~~fi~------ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~G 150 (221)
T KOG1422|consen 95 PPESASAGS-------DIFAKFSAFIK------KSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDG 150 (221)
T ss_pred CHHHHhhHH-------HHHHHHHHHHh------CchhhccchHHHHHHHHHHHHHHHhcCccCCccccC
Confidence 334433211 11111111111 123444555677788889999999998 56888875
No 58
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.37 E-value=3e-12 Score=78.65 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=52.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHh
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (185)
..|+ +.+++|.|++++|++.|+||+.+.+. . .+ ..+|.|+||+|++||.+|+||.||+.||.++
T Consensus 11 ~~~~--~~~~~~~kv~~~L~elglpye~~~~~--~-----~~--~~~P~GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 11 QILL--PDNASCLAVQTFLKMCNLPFNVRCRA--N-----AE--FMSPSGKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred eeec--CCCCCHHHHHHHHHHcCCCcEEEecC--C-----cc--ccCCCCcccEEEECCEEEeCHHHHHHHHhcC
Confidence 3455 57889999999999999999887321 1 11 1467899999999999999999999999864
No 59
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.26 E-value=3.8e-11 Score=75.29 Aligned_cols=73 Identities=16% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
..+++||+.+.||+|.+++-+|+..|++|+.+.++-. ....++...++..++|++..+|..+.++..|.+||+
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 5679999999999999999999999999999877643 233456666788899999999999999999999984
No 60
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.23 E-value=6.5e-11 Score=88.62 Aligned_cols=69 Identities=26% Similarity=0.319 Sum_probs=59.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+++||.+..||+|.|||.+|.+.||+|+.++|++- ...-++-+.+.+||+|..+|..+.||.+|+.-|+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV-----~r~eIk~SsykKVPil~~~Geqm~dSsvIIs~la 158 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPV-----LRQEIKWSSYKKVPILLIRGEQMVDSSVIISLLA 158 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecch-----hhhhccccccccccEEEeccceechhHHHHHHHH
Confidence 68999999999999999999999999999999975 2222445678899999977777999999987773
No 61
>PRK10638 glutaredoxin 3; Provisional
Probab=99.14 E-value=2.4e-10 Score=72.29 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=62.3
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
+++++|..+.||+|++++.+|+.+|++|+.+.++... ...+++...++..++|++..+|..+.+...+.++-.+
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~--~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDA--AKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCH--HHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 4699999999999999999999999999998886431 1346677889999999999999999998877765443
No 62
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.07 E-value=1e-09 Score=67.42 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=60.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+++||..+.||+|.+++.+|+..|++|+.+.++.. .....+.......++|++..+|..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~---~~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKD---ITGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCC---hhHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 58999999999999999999999999998888643 123345555677899999999999999999999974
No 63
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.04 E-value=1.7e-09 Score=66.62 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=50.3
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHh
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEK 97 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~ 97 (185)
..||+|.++.+.|+.+|+||+.+.... ...+|.|++|+|+++|..+.+|..|++||.++
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n----------~~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN----------PWRSPTGKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC----------CCCCCCCccCEEEECCEEecChHHHHHHHHHc
Confidence 467999999999999999998764431 12478999999999999999999999999875
No 64
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.86 E-value=1.2e-08 Score=62.75 Aligned_cols=69 Identities=23% Similarity=0.260 Sum_probs=57.1
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
+++||+.+.||+|++++.+|+.+|++|+.+.+.-. ....+++.++++..++|++..+|..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~--~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIF--PERKAELEERTGSSVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHh
Confidence 58999999999999999999999999998877632 2245577888899999999999988877655443
No 65
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.81 E-value=2e-08 Score=63.10 Aligned_cols=61 Identities=20% Similarity=0.297 Sum_probs=48.1
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 85 (185)
+++||..+.||+|.+++-+|+.+||+|+.+.++-. +...+....++..++|+++.++..+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~~g~~~vPvv~i~~~~~~ 62 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRAQGFRQLPVVIAGDLSWS 62 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCCCcCEEEECCEEEe
Confidence 58999999999999999999999999999988732 11222233468889999997776554
No 66
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=98.80 E-value=4.8e-07 Score=67.66 Aligned_cols=93 Identities=19% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCceEEeecC-------CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHH
Q 029938 20 SSKLVLYSYW-------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 20 ~~~~~Ly~~~-------~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
...+-||.++ .||+|.|+-..|+..+|||+.+.... ...+..|++|.++-+|..+.+|.-|..
T Consensus 43 kD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~----------~~rSr~G~lPFIELNGe~iaDS~~I~~ 112 (281)
T KOG4244|consen 43 KDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL----------KRRSRNGTLPFIELNGEHIADSDLIED 112 (281)
T ss_pred cCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc----------eeeccCCCcceEEeCCeeccccHHHHH
Confidence 3457788764 78999999999999999999875543 134778999999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcc
Q 029938 93 YLEEKYPQRALLPAADPQQRALNLQAASIISSS 125 (185)
Q Consensus 93 yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~ 125 (185)
+|.+++.-+...+. .+++......+.++..
T Consensus 113 ~L~~hf~~~~~L~~---e~~a~s~Al~rm~dnh 142 (281)
T KOG4244|consen 113 RLRKHFKIPDDLSA---EQRAQSRALSRMADNH 142 (281)
T ss_pred HHHHHcCCCCCCCH---HHHHHHHHHHHHHHHH
Confidence 99999875443433 5666666665555543
No 67
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.80 E-value=2.4e-08 Score=61.02 Aligned_cols=71 Identities=21% Similarity=0.185 Sum_probs=55.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeee--ecHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV--SDSYAILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l--~eS~aI~~yL 94 (185)
+++||+.++||+|++++.+|+..|++|..+.++.. ....+++.+.++...+|+++.+|..+ .++.+|-++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~--~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKD--SAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCC--HHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 48999999999999999999999999988766532 12234566778899999999888777 5666666654
No 68
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.74 E-value=5.3e-08 Score=59.08 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=58.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 93 (185)
++++|+.+.||+|++++.+|+.++++|+.+.+... .....++..+++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 37899999999999999999999999987766532 12345666778999999999999999999887653
No 69
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.74 E-value=3.5e-08 Score=60.19 Aligned_cols=64 Identities=25% Similarity=0.288 Sum_probs=52.3
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS 87 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 87 (185)
.+++|+..+||+|.+++.+|+++|++|+.+.++.. ....+++.+.++.+++|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~--~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDED--PEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCC--HHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 37899999999999999999999999998877642 12345677888999999999888766543
No 70
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=2e-07 Score=69.41 Aligned_cols=150 Identities=19% Similarity=0.144 Sum_probs=100.8
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHcCCCc--eEEEecC-C-CCCC---------CCh-----------------h-hhh
Q 029938 19 SSSKLVLYSYWQSSCSWRVRFALKLKGLIY--EYKAVDL-S-KGEQ---------FSP-----------------E-FEE 67 (185)
Q Consensus 19 ~~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~--~~~~v~~-~-~~~~---------~~~-----------------~-~~~ 67 (185)
+.+.+.||....||++.|+.++.+.+|++= ....+.+ . .+.. ... + |..
T Consensus 34 akgryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~ 113 (319)
T KOG2903|consen 34 AKGRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYI 113 (319)
T ss_pred CCceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhh
Confidence 357899999999999999999999999851 2222222 0 0000 000 0 111
Q ss_pred hCC----CCccceEEeC---CeeeecHHHHHHHHH---------HhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHH
Q 029938 68 LNP----LHFVPVLVDG---DVVVSDSYAILLYLE---------EKYPQRALLPAADPQQRALNLQAASIISSSMQPLHM 131 (185)
Q Consensus 68 ~~p----~~~vP~L~~~---g~~l~eS~aI~~yL~---------~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~ 131 (185)
-+| ..+||+|-|- ..+-.||..|++.+. +..+.-.|+|. .-++.++.|..|+...+-.-
T Consensus 114 ~~p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~---~L~~~Ide~N~wvy~~INNG-- 188 (319)
T KOG2903|consen 114 ASPNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPS---SLRAQIDETNSWVYDKINNG-- 188 (319)
T ss_pred cCCCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCH---HHHHHHhhhhceecccccCc--
Confidence 112 2379999864 355669999999999 33344567887 56999999999988766432
Q ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEeeh
Q 029938 132 LSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCFW 177 (185)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g~ 177 (185)
++.- +-...++.-+....++-+.|+.+|++|+++.+.|++|-
T Consensus 189 --VYk~--GFA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~ 230 (319)
T KOG2903|consen 189 --VYKC--GFAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGD 230 (319)
T ss_pred --eeee--ccccccchHHHHHHHHHHHHHHHHHHHhcccceEeecc
Confidence 2221 22235566667778888999999999999877788874
No 71
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-07 Score=59.59 Aligned_cols=71 Identities=21% Similarity=0.153 Sum_probs=54.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhh-hhCCCCccceEEeCCeeeecHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE-ELNPLHFVPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~~~g~~l~eS~aI~~y 93 (185)
++++|..+.||||.+++-+|..+|++|+.+.++...++ ...++. ..++..++|++..+|..+.....+-++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHH
Confidence 48999999999999999999999999999988865321 233444 445899999999888777755444443
No 72
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.67 E-value=1.1e-07 Score=58.63 Aligned_cols=72 Identities=22% Similarity=0.220 Sum_probs=56.6
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCC-ccceEEeCCeeeecHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLH-FVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+++||+.+.||+|.+++-+|+..|++|+.+.++... ....++....... .+|++..+|..+.+...+.++-.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~--~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~ 73 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP--ALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALER 73 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHh
Confidence 478999999999999999999999999988887431 1223444444444 89999999999999888877643
No 73
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.57 E-value=1.7e-07 Score=57.88 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhC-CCCccceEE-eCCeeeecHH--HHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN-PLHFVPVLV-DGDVVVSDSY--AILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~-~~g~~l~eS~--aI~~yL 94 (185)
+++||+..+||+|++++-.|+..|++|+.+.++-. ......+.+++ +...+|+++ ++|..+.++. -++.+|
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~--~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~~~~~~~~l 75 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEED--EGAADRVVSVNNGNMTVPTVKFADGSFLTNPSAAQVKAKL 75 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCC--HhHHHHHHHHhCCCceeCEEEECCCeEecCCCHHHHHHHh
Confidence 47899999999999999999999999987766532 22334555776 889999997 6787777653 444444
No 74
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.56 E-value=5.7e-07 Score=56.97 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=61.0
Q ss_pred ceEEeecCCCchHHHHHHHHHH-----cCCCceEEEecCCCCCCCChhhhhhCC--CCccceEEeCCeeeecHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNP--LHFVPVLVDGDVVVSDSYAILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p--~~~vP~L~~~g~~l~eS~aI~~yL 94 (185)
++++|+.+.||+|.+++-+|+. .|++|+.+.++-.. ....++..... ...+|.+..+|..+.+...|.+++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~ 79 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYV 79 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHH
Confidence 6899999999999999999999 89999988877321 11234444333 368999999999999999999999
Q ss_pred HHhCC
Q 029938 95 EEKYP 99 (185)
Q Consensus 95 ~~~~~ 99 (185)
.+.++
T Consensus 80 ~~~~~ 84 (85)
T PRK11200 80 KENLG 84 (85)
T ss_pred HHhcc
Confidence 98764
No 75
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.52 E-value=4.5e-07 Score=56.54 Aligned_cols=72 Identities=21% Similarity=0.209 Sum_probs=58.6
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++.+......+|++..+|..+.+...+..+-.+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887431 1234555666788999999999999888887776554
No 76
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.52 E-value=5.6e-07 Score=58.73 Aligned_cols=76 Identities=16% Similarity=0.157 Sum_probs=58.8
Q ss_pred CCCCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCC-CCChhhhhhCCCCccceEEeCCeeeecHHHHHHH
Q 029938 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGE-QFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 18 ~~~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 93 (185)
.+.+++++|..+.||+|.+++-+|+..|++|+.+.++-.+.. .....+...+...++|.+..+|..+.+...+...
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHHH
Confidence 445779999999999999999999999999998888744211 0112344556788999999999998888776653
No 77
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.4e-06 Score=64.42 Aligned_cols=147 Identities=19% Similarity=0.192 Sum_probs=100.3
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHcCCC--ceEEEecCCC------------CCCCCh---------hhhhhCC----C
Q 029938 19 SSSKLVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDLSK------------GEQFSP---------EFEELNP----L 71 (185)
Q Consensus 19 ~~~~~~Ly~~~~s~~~~~vr~~l~~~gi~--~~~~~v~~~~------------~~~~~~---------~~~~~~p----~ 71 (185)
+.+.+.||....||+++|..++-+++|++ .....|.+.. |....+ -|..-.| .
T Consensus 48 e~GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgR 127 (324)
T COG0435 48 EKGRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGR 127 (324)
T ss_pred CCCeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCc
Confidence 56789999999999999999999999986 2223333210 000000 0111122 2
Q ss_pred CccceEEeC--Ce-eeecHHHHHHHHHHhCCC-----CCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcC
Q 029938 72 HFVPVLVDG--DV-VVSDSYAILLYLEEKYPQ-----RALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFG 143 (185)
Q Consensus 72 ~~vP~L~~~--g~-~l~eS~aI~~yL~~~~~~-----~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (185)
-+||+|.|. .. +-.||..|++-+...+.+ ..|+|. .-+.+++.|.+|+...+-. .+++. +-..
T Consensus 128 vTVPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~---~Lr~eId~~n~~Iy~~vNN----GVYk~--GFA~ 198 (324)
T COG0435 128 VTVPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPE---ALRTEIDELNKWIYDTVNN----GVYKA--GFAT 198 (324)
T ss_pred eeEEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCH---HHHHHHHHHHhhhcccccC----ceeee--cccc
Confidence 369999964 34 445999999999876532 568988 6699999999988776643 23221 2234
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 144 PDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+++-+.....+-..|+.+|+.|+++ .|++|
T Consensus 199 tq~aYeea~~~lF~~Ld~lE~~L~~~--ryl~G 229 (324)
T COG0435 199 TQEAYEEAVKKLFEALDKLEQILSER--RYLTG 229 (324)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcC--eeecc
Confidence 66777788888999999999999985 67765
No 78
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.49 E-value=4.6e-07 Score=55.53 Aligned_cols=57 Identities=19% Similarity=0.238 Sum_probs=44.2
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCe
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~ 82 (185)
+++|+.+.||+|++++-+|+.+|++|+.+.++-. +...+.+...+...+|+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCcccCEEEECCC
Confidence 5899999999999999999999999999888733 12223333457779999996553
No 79
>PHA03050 glutaredoxin; Provisional
Probab=98.45 E-value=1.2e-06 Score=58.06 Aligned_cols=74 Identities=15% Similarity=0.198 Sum_probs=58.5
Q ss_pred CCCceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCC-CCCCChhhhhhCCCCccceEEeCCeeeecHHHHHH
Q 029938 19 SSSKLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 19 ~~~~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
..+++++|..+.||||.+++-+|+..|+ +|+.+.++-.. +.....++.+.+...+||.+..+|..|.+...+..
T Consensus 11 ~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 11 ANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred ccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHHH
Confidence 3567999999999999999999999999 78888777321 11124456677788899999999999888776655
No 80
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.45 E-value=1.3e-06 Score=54.67 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=60.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCC-CCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKG-EQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
++++|+...||+|.+++-+|...+++|+.+.++.... ......+.+.+...++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 3789999999999999999999999999998886521 11122344666778999999999999999999888765
No 81
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.40 E-value=4.1e-07 Score=53.65 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=48.9
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeee
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV 84 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l 84 (185)
+++|+.+.||+|.+++-+|+..|++|+.+.++-.. ...+++.+.....++|++..+|..|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999888541 2344555666788999999888764
No 82
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.38 E-value=2.9e-06 Score=53.84 Aligned_cols=75 Identities=12% Similarity=0.169 Sum_probs=57.7
Q ss_pred eEEeecCCCchHHHHHHHHHHcC-----CCceEEEecCCCCCCCChhhhhhCCC--CccceEEeCCeeeecHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKG-----LIYEYKAVDLSKGEQFSPEFEELNPL--HFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+++|+.+.||+|.+++-+|+..+ ++|+.+.++.. + ....++...... ..||++..+|..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~-~-~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE-G-ISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC-H-HHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 68999999999999999999985 56776666522 1 113345444433 689999999999999999999998
Q ss_pred HhCC
Q 029938 96 EKYP 99 (185)
Q Consensus 96 ~~~~ 99 (185)
+++.
T Consensus 80 ~~~~ 83 (86)
T TIGR02183 80 ENFD 83 (86)
T ss_pred hccc
Confidence 8764
No 83
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.20 E-value=1e-05 Score=52.58 Aligned_cols=75 Identities=21% Similarity=0.171 Sum_probs=57.1
Q ss_pred CCCCceEEeec-----CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHH
Q 029938 18 SSSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 18 ~~~~~~~Ly~~-----~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
.+..++.+|.. +.||+|.+++-+|..+|++|+.+.+.-. .....++...+...++|.+..+|..+.+...+.+
T Consensus 9 i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~--~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 9 IKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLED--PEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred hccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 34567899965 7899999999999999999998777522 1223345566777899999999998888777665
Q ss_pred HH
Q 029938 93 YL 94 (185)
Q Consensus 93 yL 94 (185)
..
T Consensus 87 l~ 88 (97)
T TIGR00365 87 MY 88 (97)
T ss_pred HH
Confidence 43
No 84
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.19 E-value=9.3e-06 Score=50.90 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=57.5
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCC--ceEEEecCCCCC-CCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHH
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLI--YEYKAVDLSKGE-QFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~--~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~ 96 (185)
+++|+.++||+|.+++-+|+..+++ |+.+.++..... .....+.......++|.+..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 888888754211 1112244556677899999999999999888777654
No 85
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.13 E-value=1.7e-05 Score=50.74 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=57.7
Q ss_pred CCCceEEeec-----CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHH
Q 029938 19 SSSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 19 ~~~~~~Ly~~-----~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 93 (185)
...++++|.. +.||+|.+++-+|+..|++|+.+.+.-. .....++.+.+...++|.+..+|..|.+...+.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~l 83 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKEM 83 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHHH
Confidence 4567888865 5999999999999999999999887632 12234555667778999999999998888777664
Q ss_pred H
Q 029938 94 L 94 (185)
Q Consensus 94 L 94 (185)
.
T Consensus 84 ~ 84 (90)
T cd03028 84 H 84 (90)
T ss_pred H
Confidence 3
No 86
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.09 E-value=2.3e-05 Score=47.88 Aligned_cols=56 Identities=29% Similarity=0.310 Sum_probs=48.2
Q ss_pred CCCchHHHHHHHHHHcCCC---ceEEEecCCCCCCCChhhhhhCCCCccceEEe-CCeeeecHHHHHHHH
Q 029938 29 WQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYL 94 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL 94 (185)
..+|.|.++.+.++..+.+ ++.+..+. + ..+|.|++|+|.+ ++..+.+-..|++||
T Consensus 12 sid~ecLa~~~yl~~~~~~~~~~~vv~s~n-------~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 12 SIDPECLAVIAYLKFAGAPEQQFKVVPSNN-------P---WLSPTGELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred ccCHHHHHHHHHHHhCCCCCceEEEEEcCC-------C---CcCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence 3678999999999999999 77776542 1 3589999999998 899999999999998
No 87
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.68 E-value=0.00016 Score=58.93 Aligned_cols=70 Identities=14% Similarity=0.149 Sum_probs=53.3
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhh-h--------hCCCCccceEEeCCeeeecHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFE-E--------LNPLHFVPVLVDGDVVVSDSYAI 90 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~--------~~p~~~vP~L~~~g~~l~eS~aI 90 (185)
|.++++|..+.||+|.+++-+|..+||+|+.+.++-. ....++. . .....+||++..+|..+.+-..+
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~---~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD---VKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC---hhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 3469999999999999999999999999999888732 1112222 1 24567899999888888877665
Q ss_pred HH
Q 029938 91 LL 92 (185)
Q Consensus 91 ~~ 92 (185)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 44
No 88
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=97.65 E-value=0.00031 Score=47.14 Aligned_cols=67 Identities=34% Similarity=0.509 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHHHHhh-c-CchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDK-F-GPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+++++++|+.|+++.+.+.....+....... . ..+...+...+.+.+.|..+|+.|++++++|++|
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 70 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFG 70 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecC
Confidence 47999999999999888875433333322111 1 1234456677789999999999998655568875
No 89
>PRK10824 glutaredoxin-4; Provisional
Probab=97.61 E-value=0.0004 Score=46.42 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=56.9
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHH
Q 029938 20 SSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (185)
Q Consensus 20 ~~~~~Ly~~-----~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 94 (185)
..++.+|.- +.||||.+++-+|...|++|+.+.++-. ......+...+...++|-+..+|..|.+...+....
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHHH
Confidence 466888865 4899999999999999999998877632 123345556678889999999999998887766643
No 90
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=0.00048 Score=45.14 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=61.4
Q ss_pred CCCCCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCC-CCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHH
Q 029938 17 SSSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK-GEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 17 ~~~~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
+.+.+++.+|.-..||+|.+++-+|...|+++..++++-.. +......+..+....++|.+..+|..+.....+..+-.
T Consensus 10 ~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 10 MISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMALHK 89 (104)
T ss_pred HhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence 44566799999999999999999999999999999888653 11122223355666799999999999998888776544
Q ss_pred H
Q 029938 96 E 96 (185)
Q Consensus 96 ~ 96 (185)
.
T Consensus 90 ~ 90 (104)
T KOG1752|consen 90 S 90 (104)
T ss_pred c
Confidence 3
No 91
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.018 Score=44.60 Aligned_cols=93 Identities=19% Similarity=0.201 Sum_probs=69.2
Q ss_pred CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE-eCCeeeecHHHHHHHHHHhCCCCCCCCCCC
Q 029938 30 QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV-DGDVVVSDSYAILLYLEEKYPQRALLPAAD 108 (185)
Q Consensus 30 ~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~ 108 (185)
.++-|.++.+.++..+.|.+.+..+.. -.+|.|++|+|+ ++|..+..-.-|..+|...-..-.+-+.-.
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~----------~~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNP----------WRSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCC----------CCCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 567899999999999977766654421 137889999999 668999999999999998532222333212
Q ss_pred HHHHHHHHHHHHHHHcchhhHHHH
Q 029938 109 PQQRALNLQAASIISSSMQPLHML 132 (185)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~ 132 (185)
..+.+....|++++...+.+++..
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~ 109 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLY 109 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999998888776554
No 92
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.005 Score=44.92 Aligned_cols=86 Identities=20% Similarity=0.254 Sum_probs=67.1
Q ss_pred CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC-CCCCCCC
Q 029938 29 WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ-RALLPAA 107 (185)
Q Consensus 29 ~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~-~~l~p~~ 107 (185)
+...-|..|...|...++||..+... ..+| .+|.|++|.|..+...+.|=.+|+.+..++.-. .....
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~ls-- 100 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLS-- 100 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhh--
Confidence 34567999999999999999876443 3344 589999999999999999999999999998643 23333
Q ss_pred CHHHHHHHHHHHHHHHcch
Q 029938 108 DPQQRALNLQAASIISSSM 126 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~ 126 (185)
..+++.++..+..++..+
T Consensus 101 -E~qkadmra~vslVen~~ 118 (257)
T KOG3027|consen 101 -EDQKADMRAYVSLVENLL 118 (257)
T ss_pred -hHHHHHHHHHHHHHHHHH
Confidence 367888888888777654
No 93
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=97.49 E-value=0.00054 Score=45.74 Aligned_cols=69 Identities=22% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHHHHcchhhHHHHHH-HHHHHh-------hcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 105 PAADPQQRALNLQAASIISSSMQPLHMLSL-LKYIED-------KFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 105 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
|. ++.+++++++|+.+..+.+.+.+.... ...... ....+...+....++.+.|+.+|++|+++ +|++|
T Consensus 2 ~~-~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 78 (119)
T cd03189 2 PP-DTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKK--GYFVG 78 (119)
T ss_pred CC-CHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccC--CCCCC
Confidence 45 889999999999999998887654322 221111 01234456677889999999999999763 67763
No 94
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.41 E-value=0.00082 Score=46.92 Aligned_cols=70 Identities=19% Similarity=0.205 Sum_probs=53.5
Q ss_pred ceEEeecC------CCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCC----CCccceEEeCCeeeecHHHHH
Q 029938 22 KLVLYSYW------QSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNP----LHFVPVLVDGDVVVSDSYAIL 91 (185)
Q Consensus 22 ~~~Ly~~~------~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~L~~~g~~l~eS~aI~ 91 (185)
+++||..+ .+|+|.+++-+|+.++|+|+.+.|+... ....++.+... ..++|.+..+|..|.+...+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~ 78 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHH
Confidence 36788877 7999999999999999999988776431 12344555433 368999999999998887776
Q ss_pred HH
Q 029938 92 LY 93 (185)
Q Consensus 92 ~y 93 (185)
+.
T Consensus 79 ~L 80 (147)
T cd03031 79 RL 80 (147)
T ss_pred HH
Confidence 63
No 95
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.32 E-value=0.0015 Score=42.72 Aligned_cols=64 Identities=11% Similarity=0.024 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHH--hhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIE--DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++++++|+.+..+.+.+.+...+..... .....+...+...+++.+.|+.+|++|++ ++|++|
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~--~~~l~g 67 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAG--RPYLAG 67 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCC--CCcccC
Confidence 58899999999999998877654333221 11224456777889999999999999985 357764
No 96
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=97.31 E-value=0.00099 Score=43.96 Aligned_cols=63 Identities=11% Similarity=-0.062 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEe
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMC 175 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~ 175 (185)
+++.+++|+.|.+..+.+.+..............++..+...+++.+.++.+|+.|++ ++|++
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~ 63 (113)
T cd03178 1 ERYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAG--RDYLA 63 (113)
T ss_pred ChHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHcc--CCccc
Confidence 4789999999999999886554322211122234566788899999999999999974 34554
No 97
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.29 E-value=0.0015 Score=38.98 Aligned_cols=58 Identities=12% Similarity=0.002 Sum_probs=40.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHc-----CCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 85 (185)
++++|+.++||+|.+++-+++.. ++++..+.++ ..++.........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 47899999999999998888865 4555444433 2344555555567999997776654
No 98
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=97.23 E-value=0.0018 Score=43.45 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++.+++|+.|..+.+.+.+...+.........++...+...+++.+.|+.+|+.|+.+ +|++|
T Consensus 1 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~--~~l~G 64 (123)
T cd03181 1 EEAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKR--TYLVG 64 (123)
T ss_pred ChHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccC--ceecc
Confidence 37889999999999998877655544332223455678889999999999999999853 57764
No 99
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=97.13 E-value=0.0011 Score=43.75 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHh--hcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIED--KFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++++++|+.|..+.+.+.+.......... ....+...+...+.+.+.++.+|+.|++ ++|++|
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~--~~~l~G 67 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAG--GPYLLG 67 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcC--CCeeeC
Confidence 589999999999999888765433321110 1112455778889999999999999974 467775
No 100
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=97.10 E-value=0.0026 Score=42.18 Aligned_cols=67 Identities=9% Similarity=-0.182 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHHHHHHcchhhHHHHHHHHHH---H---hhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYI---E---DKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++.+++.+++|+.|+...+.+.+...+.... + ....+++..+...+++.+.|+.+|+.|+++ +|++|
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~--~~l~g 73 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGS--PYVAG 73 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCC--CcccC
Confidence 4678999999999988887765554332211 1 122346678888999999999999999753 46654
No 101
>PTZ00062 glutaredoxin; Provisional
Probab=97.10 E-value=0.0025 Score=46.97 Aligned_cols=71 Identities=17% Similarity=0.099 Sum_probs=54.7
Q ss_pred CCceEEeec-----CCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHH
Q 029938 20 SSKLVLYSY-----WQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 20 ~~~~~Ly~~-----~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
..++.||.. +.||+|++++-+|+..|++|+...+.-. +.....+...+...++|.+..+|..|.+...+.+
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d--~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFED--PDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 556888865 5899999999999999999997776632 2223445566777899999999998887766665
No 102
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=96.72 E-value=0.0063 Score=39.73 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+++++++|+.++.+.+.+.+..... +.++..+...+.+.+.|..+|++|++ ++|++|
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 59 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEK-------GRKKEAEKARKELRESLLALAPVFAH--KPYFMS 59 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh-------CcHHHHHHHHHHHHHHHHHHHHHHcC--CCcccC
Confidence 47999999999999888776543221 12455677888999999999999974 467764
No 103
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.72 E-value=0.0029 Score=43.36 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=30.2
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|++|++++-.|+.+||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999988775
No 104
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.71 E-value=0.0025 Score=42.38 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=30.2
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecC
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~ 55 (185)
++||+.+.|++|++++-.|+.+|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999887753
No 105
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.70 E-value=0.0031 Score=42.16 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=30.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 79999999999999999999999999988774
No 106
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=96.68 E-value=0.0072 Score=40.02 Aligned_cols=64 Identities=14% Similarity=0.026 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHH-HH---HhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLK-YI---EDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++.+.+|+.|....+.+.+...... .+ .+...+++..+.....+.+.|+.+|++|++ ++|++|
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 69 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSK--SKYLAG 69 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHccc--CcccCC
Confidence 58899999999988887765543221 11 112335566677889999999999999975 367764
No 107
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.65 E-value=0.0092 Score=36.20 Aligned_cols=65 Identities=23% Similarity=0.188 Sum_probs=47.7
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCC--------CCCCChhhh--hhCCCCccceEE-eCCeeee
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSK--------GEQFSPEFE--ELNPLHFVPVLV-DGDVVVS 85 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~--------~~~~~~~~~--~~~p~~~vP~L~-~~g~~l~ 85 (185)
++.+||+...||-|....--|+-.+++|+.+.+.-.- -....++|- +.|.+--+|+|. +||.++.
T Consensus 2 skp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 2 SKPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred CCceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 4459999999999999999999999999999885320 112344444 335566789988 7776665
No 108
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.62 E-value=0.0035 Score=41.09 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=29.9
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|++|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999988875
No 109
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=96.59 E-value=0.009 Score=39.79 Aligned_cols=61 Identities=15% Similarity=-0.010 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++++++|+.|..+.+.+.+...+.+..... +...+...+++.+.|+.+|+.|++ ++|++|
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 62 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGG---AEPPEEKLDKLEEALDFLETFLEG--SDYVAG 62 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHHHHHHcc--CCeeCC
Confidence 5889999999998888876655444432222 133456778899999999999974 357775
No 110
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=96.59 E-value=0.011 Score=39.84 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHcchhhHHHHHHHHH-----HHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 112 RALNLQAASIISSSMQPLHMLSLLKY-----IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 112 ~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++++++|+.|..+.+.+.+....... +.+....++..+...+.+.+.++.+|+.|.+ +++|++|
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~-~~~~l~G 70 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLK-DKPFLAG 70 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCcccC
Confidence 57789999999888876544322211 1112235667788889999999999998543 3467775
No 111
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.51 E-value=0.0059 Score=40.71 Aligned_cols=63 Identities=11% Similarity=-0.105 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++.+++.+++|+.+....+.+.+....+...... + ..+...+++.+.++.+|++|+++ +|++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~i~~~l~~le~~L~~~--~yl~G 65 (115)
T cd03196 3 DPAALKEMLALIAENDNEFKHHLDRYKYADRYPE---E-SEEEYRQQAEAFLKDLEARLQQH--SYLLG 65 (115)
T ss_pred chHHHHHHHHHHHHcchhhHHHHHhccchhhcCc---c-cHHHHHHHHHHHHHHHHHHHccC--CccCC
Confidence 6789999999999999999887666444322221 1 36678899999999999999863 56653
No 112
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=96.49 E-value=0.0088 Score=40.17 Aligned_cols=58 Identities=17% Similarity=0.052 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+++++++|+.+..+.+.+.+...+.. .++..+...+.+.+.++.+|+.|++ ++|++|
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G 59 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAA-------KGEEREKAKEEALEALKVLEEELGG--KPFFGG 59 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcc-------chHHHHHHHHHHHHHHHHHHHHhcC--CCCCCC
Confidence 479999999999998887765543221 2445667888999999999999975 356664
No 113
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.44 E-value=0.022 Score=36.53 Aligned_cols=68 Identities=18% Similarity=0.132 Sum_probs=49.6
Q ss_pred eEEeecCCCc------hHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhC----CCCccceEEeCCeeeecHHHHHH
Q 029938 23 LVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN----PLHFVPVLVDGDVVVSDSYAILL 92 (185)
Q Consensus 23 ~~Ly~~~~s~------~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~L~~~g~~l~eS~aI~~ 92 (185)
+++|....++ .|++++.+|+-+||+|+.+.|+... ....++.+.. +...+|-+..++..+.+.-.+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~--~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNE--ENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCH--HHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHH
Confidence 6788766665 5889999999999999999887542 2334545443 34789988889999888755544
No 114
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.40 E-value=0.003 Score=40.93 Aligned_cols=64 Identities=16% Similarity=0.047 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHH--HHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKY--IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++++++|+.+..+.+.+.+....... ......+++..+....++.+.++.+|+.|+. ++|++|
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~g 67 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAG--RDFLVG 67 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHcc--CccccC
Confidence 589999999999888877654322111 1223345677888999999999999999964 346653
No 115
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=96.38 E-value=0.021 Score=39.58 Aligned_cols=59 Identities=14% Similarity=-0.076 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
..++.+++|++|....+.+.... ... ..+++..+.....+.+.|+.+|+.|+++ +|++|
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~l~~~l~~LE~~L~~~--~yl~G 61 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYK----AGF--ATTQEAYDEAVDELFEALDRLEELLSDR--RYLLG 61 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHH----Hhh--ccCHHHHHHHHHHHHHHHHHHHHHHccC--CeeeC
Confidence 46888999999999888765322 111 2456667788889999999999999753 67764
No 116
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=96.32 E-value=0.0078 Score=38.84 Aligned_cols=59 Identities=12% Similarity=-0.031 Sum_probs=41.1
Q ss_pred HHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcc
Q 029938 91 LLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFA 170 (185)
Q Consensus 91 ~~yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~ 170 (185)
+|||++. .+++|. +..+.+.+++|++.....+.. + ....+.+.++.+|++|+++
T Consensus 1 ~r~~~~~---~~~~~~-~~~~~~~vd~~~d~~~~~l~~--------------~-------~~~~~~~~l~~le~~L~~~- 54 (96)
T cd03200 1 ARFLYRL---LGPAPN-APNAATNIDSWVDTAIFQLAE--------------G-------SSKEKAAVLRALNSALGRS- 54 (96)
T ss_pred CchHHHH---hcccCC-CchHHHHHHHHHHHHHHHHhc--------------C-------CHHHHHHHHHHHHHHHcCC-
Confidence 4789988 259999 999999999999965433320 1 2233456778899999754
Q ss_pred CceEee
Q 029938 171 AKLMCF 176 (185)
Q Consensus 171 g~~~~g 176 (185)
+|++|
T Consensus 55 -~fl~G 59 (96)
T cd03200 55 -PWLVG 59 (96)
T ss_pred -CccCC
Confidence 56653
No 117
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.31 E-value=0.008 Score=41.18 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=31.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEecC
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDL 55 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~ 55 (185)
++++|+.+.|+.|++++-.|+.+|++|+.+.+.-
T Consensus 1 mi~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 1 MVVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 3899999999999999999999999999887753
No 118
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.23 E-value=0.0087 Score=41.07 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=30.3
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 79999999999999999999999999988775
No 119
>PRK10026 arsenate reductase; Provisional
Probab=96.20 E-value=0.01 Score=41.17 Aligned_cols=34 Identities=12% Similarity=-0.027 Sum_probs=31.2
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++++|+.+.|.-|++++-.|+.+|++|+.+.+-
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 5699999999999999999999999999988764
No 120
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=96.17 E-value=0.014 Score=39.23 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+||+.+.|..+++..+.+... .... ++..+...+.+.+.++.+|+.|++++++|++|
T Consensus 2 ~ra~~r~~~~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G 58 (124)
T cd03184 2 EKAQQKLLLERFSKVVSAFYK-----LLGA----PSDREEKKAELRSALENLEEELTKRGTPFFGG 58 (124)
T ss_pred hHHHHHHHHHHHhhhhHHHHH-----HHhc----cccchhhHHHHHHHHHHHHHHHHhcCCCCcCC
Confidence 589999999999754444332 1111 33445677889999999999998766678875
No 121
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.14 E-value=0.0092 Score=39.99 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=29.4
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988765
No 122
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=96.05 E-value=0.023 Score=37.64 Aligned_cols=72 Identities=19% Similarity=0.108 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee-hhhH
Q 029938 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF-WPHK 180 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g-~~~~ 180 (185)
|..+|++.++..+|+.+.+.++-...-.............-+..+....+.+...+.+|.. ++++++| |+..
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~-g~~~LFGewsIA 73 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLAD-GGPNLFGEWSIA 73 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT---SSTTSS--HH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhcc-CCCCccccchHH
Confidence 4578999999999999999876555433332222223344556777778888888888875 5566665 4443
No 123
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=96.03 E-value=0.007 Score=40.26 Aligned_cols=65 Identities=20% Similarity=0.078 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKY-IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+++++++|+.|+.+.+.+......+.. +.. ...+...+..++.+.+.+..+|..|. .+++|++|
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~le~~l~-~~~~~l~G 67 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAG-AKAEPLSEAAQAAAEKLIAVAEALLP-PGAANLFG 67 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecC-CCCCCCCHHHHHHHHHHHHHHHHHHh-cCCCcccC
Confidence 5799999999999999987622111011 111 11223445677888999999999997 34468875
No 124
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.96 E-value=0.065 Score=33.32 Aligned_cols=55 Identities=24% Similarity=0.211 Sum_probs=40.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHcC--CCceEEEecCCCCCCCChhhhhhCCCCccceEEeCC
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKG--LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGD 81 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g 81 (185)
+++||+.+.|+.|..++-+|+... .+++...||.. ..+++...-. ..+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhc-CCCCEEEEcC
Confidence 589999999999999999999654 56777888875 4445554433 4899999665
No 125
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=95.93 E-value=0.014 Score=38.41 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.6
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|+.|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999988765
No 126
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=95.91 E-value=0.046 Score=36.89 Aligned_cols=60 Identities=10% Similarity=-0.015 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhc-cCceEee
Q 029938 110 QQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDF-AAKLMCF 176 (185)
Q Consensus 110 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~-~g~~~~g 176 (185)
.+++.+++..+.+.+........ .+. ..+...+.....+.+.|..+|+.|+++ +++|++|
T Consensus 2 ~e~~~vd~~~~~~~d~~~~~~~~-~~~------~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G 62 (126)
T cd03210 2 KEAALIDMVNDGVEDLRLKYVRM-IYQ------NYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVG 62 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcC------cHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeC
Confidence 35777887777665444332221 111 123445667778999999999999876 5689986
No 127
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.018 Score=38.64 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=30.3
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
++++|+.+-|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 589999999999999999999999999987654
No 128
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.87 E-value=0.016 Score=38.63 Aligned_cols=32 Identities=16% Similarity=0.149 Sum_probs=29.7
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
++||+.+.|+-|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999988664
No 129
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=95.62 E-value=0.047 Score=37.56 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+.+.+++.++.+.+.+.......+ .......+...+.....+.+.|+.||+.|..++++|++|
T Consensus 3 e~a~iD~i~~~v~D~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G 65 (137)
T cd03208 3 ERALIDMYVEGTADLMEMILMLPF---LPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVG 65 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc---CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeC
Confidence 577888888877655544332211 111111122345566677899999999998666778875
No 130
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.099 Score=33.74 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=52.2
Q ss_pred CCceEEee-----cCCCchHHHHHHHHHHcC-CCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHH
Q 029938 20 SSKLVLYS-----YWQSSCSWRVRFALKLKG-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 20 ~~~~~Ly~-----~~~s~~~~~vr~~l~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~y 93 (185)
..++.||- .+.|+++.++.=+|...| ++|..+.|=.. +.-+..+...+--.++|-|-.+|..+.+|--|.+.
T Consensus 14 ~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d--~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em 91 (105)
T COG0278 14 ENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQD--PEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREM 91 (105)
T ss_pred cCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccC--HHHHhccHhhcCCCCCceeeECCEEeccHHHHHHH
Confidence 45577774 588999999999999999 56655554321 12333444556677999999999999888766554
Q ss_pred HH
Q 029938 94 LE 95 (185)
Q Consensus 94 L~ 95 (185)
..
T Consensus 92 ~q 93 (105)
T COG0278 92 YQ 93 (105)
T ss_pred HH
Confidence 43
No 131
>PRK10853 putative reductase; Provisional
Probab=95.32 E-value=0.031 Score=37.54 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=29.5
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999987654
No 132
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=95.24 E-value=0.039 Score=37.54 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.3
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
++++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 589999999999999999999999999988654
No 133
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.12 E-value=0.23 Score=30.41 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=39.9
Q ss_pred ceEEeecCCCchHHHH----HHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeee
Q 029938 22 KLVLYSYWQSSCSWRV----RFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 85 (185)
.+.+|. ++||.|..+ .-++++.|..++.+.++- .++..+ -....+|++..+|..+.
T Consensus 2 ~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~~ 61 (76)
T TIGR00412 2 KIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELVI 61 (76)
T ss_pred EEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEEE
Confidence 477886 999999988 668888898888888871 122222 34568999997775543
No 134
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=95.11 E-value=0.086 Score=34.01 Aligned_cols=64 Identities=13% Similarity=0.055 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++++++++++..+......... ++... +....+..++...+.+.+.++.+|++|.+++++|++|
T Consensus 2 e~~~v~~~~~~~~d~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G 65 (104)
T cd03192 2 EAARVDALVDTIADLRAEFAKY-FYEKD-GEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVG 65 (104)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-hhcCc-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeC
Confidence 5778889888866544433322 22111 0111356788889999999999999998644578875
No 135
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.07 E-value=0.17 Score=30.97 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=38.7
Q ss_pred ceEEeecCCCchHHHHHHHHHH----cCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCe
Q 029938 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDV 82 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~ 82 (185)
++++|+.++|++|..+.-.++. .+..+....|+.. ..++.........+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM----ENPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc----cCHHHHHHcCCccCCEEEECCE
Confidence 4789999999999988777653 3444566666653 3334444455667999986664
No 136
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=94.53 E-value=0.14 Score=32.81 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=40.1
Q ss_pred HHHHHHHHcchhhHHHHHHHHH-HHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcc-CceEe
Q 029938 116 LQAASIISSSMQPLHMLSLLKY-IEDKFGPDERLLWVQTHIEKGFLALEKLLIDFA-AKLMC 175 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~-g~~~~ 175 (185)
.+|....++.+..++...+... .+....+++..+....++.+.|..+|++|+++. ++|.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~d~~Tl 63 (98)
T cd03205 2 LRLEALADGILDAAVAIVYERRLRPEEKRSQPWLERQRGKIERALDALEAELAKLPLDPLDL 63 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhCcHhhhChHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCH
Confidence 4566666666666555444322 223445667889999999999999999998653 34443
No 137
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.26 E-value=0.26 Score=31.25 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=39.0
Q ss_pred ceEEeecCCCchHHHHHHHHHHc-----CCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLK-----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 85 (185)
.+.+|..++|++|..++-+++.. ++.+..+.++ ..++.........+|.++.+|..+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~------~~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA------LFQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH------hCHHHHHHcCCccCCEEEECCEEEE
Confidence 68889889999999887766554 4555444443 3345555555668999987765544
No 138
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=94.12 E-value=0.067 Score=34.37 Aligned_cols=56 Identities=9% Similarity=-0.104 Sum_probs=37.3
Q ss_pred HHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++|+.|..+.+.+............ .+...+...+++.+.++.+|+.|+++ +|++|
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 57 (100)
T cd03206 2 QRWLSVAAGEIANGPAAARLITLFG---APLDKETAIARAHRLLRLLEEHLAGR--DWLAG 57 (100)
T ss_pred ceehhhhhhhcccchhHHHHHHHhC---CHhHHHHHHHHHHHHHHHHHHHHccC--CccCC
Confidence 5788899888866543333322211 12245677889999999999999864 57663
No 139
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=94.10 E-value=0.015 Score=37.51 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 109 PQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 109 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+..++.+++|+++.. . ...........+...+...+.+.+.++.+|+.|++++|+|++|
T Consensus 3 ~~~~a~i~~W~~f~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G 61 (99)
T PF14497_consen 3 PYWRALIDRWLDFSV-A--------FRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVG 61 (99)
T ss_dssp -TTHHHHHHHHH-GH-C--------CHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSS
T ss_pred hHHHHHHHHHHhccc-h--------hhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecC
Confidence 445777888888441 0 0000000111234567788899999999999999998889886
No 140
>PHA02125 thioredoxin-like protein
Probab=94.04 E-value=0.3 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=36.5
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD 79 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~ 79 (185)
+.+|+-++|+.|+++.-.|+ +++++...|+-. ..+++.....-..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~----~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTD----EGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCC----CCHHHHHHcCCceeCeEEC
Confidence 77888999999998877775 356666666643 3445555556668999883
No 141
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=94.01 E-value=0.1 Score=34.69 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=29.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987653
No 142
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.99 E-value=0.1 Score=34.78 Aligned_cols=32 Identities=22% Similarity=0.058 Sum_probs=29.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
+++|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999987654
No 143
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=93.58 E-value=0.47 Score=31.68 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHh-ccCceEee
Q 029938 108 DPQQRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLID-FAAKLMCF 176 (185)
Q Consensus 108 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~g~~~~g 176 (185)
|+.+|+.+++|+.|... +. ..++.+.+.+. .. +.+.+.++.+|+.|++ ++++|++|
T Consensus 1 d~~~ra~~~~~~~~~~~-~~---~~~~~~~~~~~-~~--------~~~~~~l~~Le~~L~~~~~~~fl~G 57 (120)
T cd03203 1 DPAKREFADELLAYTDA-FT---KALYSSLIKGD-PS--------AEAAAALDYIENALSKFDDGPFFLG 57 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HH---HHHHHHHhcCC-ch--------HHHHHHHHHHHHHHHhcCCCCCcCC
Confidence 45689999999999322 21 11222222221 11 2346678888888874 23467765
No 144
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.24 E-value=0.33 Score=27.03 Aligned_cols=53 Identities=26% Similarity=0.149 Sum_probs=33.9
Q ss_pred eEEeecCCCchHHHHHHHHH-----HcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 23 LVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
+.+|+...|+.|.+.+..+. ..++.+..+.++.. ..........+...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDED---PALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCC---hHHhhHHHhCCCccccEEE
Confidence 35677789999999999998 44555555544422 1111112356788999887
No 145
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=93.15 E-value=0.096 Score=33.05 Aligned_cols=54 Identities=19% Similarity=0.098 Sum_probs=36.7
Q ss_pred HHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhc
Q 029938 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDF 169 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 169 (185)
++|+.|+...+.+................++..+...+.+.+.++.+|+.|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 55 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGR 55 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 578888888776655543332211112245667888899999999999999754
No 146
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=92.95 E-value=0.48 Score=31.28 Aligned_cols=67 Identities=21% Similarity=0.188 Sum_probs=43.0
Q ss_pred CCchHHHHHHHHH---HcCCCceEEEecCCCCCCCChhhhhh-C-CCCccceEE-eCCe-------------eeecHHHH
Q 029938 30 QSSCSWRVRFALK---LKGLIYEYKAVDLSKGEQFSPEFEEL-N-PLHFVPVLV-DGDV-------------VVSDSYAI 90 (185)
Q Consensus 30 ~s~~~~~vr~~l~---~~gi~~~~~~v~~~~~~~~~~~~~~~-~-p~~~vP~L~-~~g~-------------~l~eS~aI 90 (185)
.||.|..+.=+|. ...-..+.+.|++. ..+.+..+. . ....+|+|+ .+|. .|.++..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~---RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFP---RPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCC---CchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 4555555544433 23334566677765 244555544 2 245689999 5444 79999999
Q ss_pred HHHHHHhCC
Q 029938 91 LLYLEEKYP 99 (185)
Q Consensus 91 ~~yL~~~~~ 99 (185)
++||+++|+
T Consensus 100 ~~~La~r~g 108 (112)
T PF11287_consen 100 LRYLAERHG 108 (112)
T ss_pred HHHHHHHcC
Confidence 999999996
No 147
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=90.79 E-value=0.76 Score=30.57 Aligned_cols=58 Identities=7% Similarity=-0.132 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 111 QRALNLQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 111 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++.+++..+.+.+........ .. .. ..+..++.....+.+.+..+|++|+++ +|++|
T Consensus 2 e~~~id~~~~~~~d~~~~~~~~-~~----~~-~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 59 (121)
T cd03209 2 ERIRVDMLEQQAMDLRMGLARI-CY----SP-DFEKLKPDYLAKLPDKLKLFSDFLGDR--PWFAG 59 (121)
T ss_pred chHHHHHHHHHHHHHHHHHHHh-hc----Cc-chHHHHHHHHHHHHHHHHHHHHHhCCC--CCcCC
Confidence 4678888888776554332221 11 11 224566778888999999999999753 57764
No 148
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=90.05 E-value=0.68 Score=27.29 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 029938 145 DERLLWVQTHIEKGFLALEKLLIDF 169 (185)
Q Consensus 145 ~~~~~~~~~~~~~~l~~le~~L~~~ 169 (185)
++.++..++++.+.|+.+|++|+++
T Consensus 1 ~~~~~~~~~~~~~~l~~le~~L~~~ 25 (69)
T PF13410_consen 1 PAAVERARAQLEAALDALEDHLADG 25 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3567889999999999999999976
No 149
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=89.02 E-value=1 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.115 Sum_probs=25.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 144 PDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 144 ~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+++..+....++.+.|..+|+.|+ +++|++|
T Consensus 22 ~~~~~~~~~~~~~~~l~~le~~l~--~~~~l~G 52 (95)
T PF00043_consen 22 DEEMVEEARAKVPRYLEVLEKRLK--GGPYLVG 52 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--TSSSSSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHc--CCCeeec
Confidence 456788899999999999999999 5577764
No 150
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=88.96 E-value=3.5 Score=25.02 Aligned_cols=58 Identities=21% Similarity=0.079 Sum_probs=35.7
Q ss_pred ceEEeecCCCchHHHHHH----HHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecH
Q 029938 22 KLVLYSYWQSSCSWRVRF----ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS 87 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 87 (185)
+++++ .+.||+|.++.- ++...|+.++.+.+. ..++. .......+|++..+|...+..
T Consensus 2 ~I~v~-~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 2 KIKVF-SPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFVG 63 (76)
T ss_dssp EEEEE-CSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEES
T ss_pred EEEEe-CCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEEe
Confidence 36675 467999996554 555667666555432 23333 445667899999777665443
No 151
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=88.74 E-value=1 Score=29.18 Aligned_cols=67 Identities=19% Similarity=0.185 Sum_probs=38.2
Q ss_pred eEEeecCCCc------hHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhC---------CCCccceEEeCCeeeecH
Q 029938 23 LVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN---------PLHFVPVLVDGDVVVSDS 87 (185)
Q Consensus 23 ~~Ly~~~~s~------~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~---------p~~~vP~L~~~g~~l~eS 87 (185)
+++|....++ ..+++..+|+.++|+|+.+.|... +..+....... +..-.|-+..++..+.+=
T Consensus 3 I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~--e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdy 80 (99)
T PF04908_consen 3 IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMD--EEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDY 80 (99)
T ss_dssp EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEH
T ss_pred EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCC--HHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeH
Confidence 6788765554 467999999999999998877642 22233333333 222346777787776655
Q ss_pred HHHH
Q 029938 88 YAIL 91 (185)
Q Consensus 88 ~aI~ 91 (185)
-.+-
T Consensus 81 e~f~ 84 (99)
T PF04908_consen 81 EDFE 84 (99)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 152
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=88.64 E-value=0.43 Score=31.58 Aligned_cols=30 Identities=17% Similarity=0.011 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCceEee
Q 029938 147 RLLWVQTHIEKGFLALEKLLIDF-AAKLMCF 176 (185)
Q Consensus 147 ~~~~~~~~~~~~l~~le~~L~~~-~g~~~~g 176 (185)
..+.....+.+.++.+|..++.. +++|++|
T Consensus 38 ~~~~~~~~~~~~~~~le~~l~~~~~~~yl~G 68 (114)
T cd03194 38 LSEAVQADIARIEAIWAECLARFQGGPFLFG 68 (114)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 34567777888888888888755 5678875
No 153
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=87.11 E-value=0.35 Score=31.03 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=35.3
Q ss_pred HHHHHHHHcchhhHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 116 LQAASIISSSMQPLHMLSLLKYIEDKFGPDERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
++|+.|..+.+.+.+.....+ ..++..+...+++.+.++.+|++|+++ +|++|
T Consensus 2 ~~w~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~le~~l~~~--~~l~g 54 (103)
T cd03207 2 LRWLFFYAGVVEPALIAKAMG------IEEPARMAGFGSYDDVLAALEQALAKG--PYLLG 54 (103)
T ss_pred eeeeeeccccccHHHHHHHcC------CCcchhhhhhhhHHHHHHHHHHHHccC--CcccC
Confidence 356777777777765543221 123345667788999999999999864 56654
No 154
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.72 E-value=1.1 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.230 Sum_probs=22.1
Q ss_pred eecCCCchHHHHHHHHHHcCCCceEEEec
Q 029938 26 YSYWQSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 26 y~~~~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
|+.+.|.-|++++-.|+.+|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 77899999999999999999999977553
No 155
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=85.13 E-value=0.58 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=13.4
Q ss_pred ccceEE--eCCeeeecHHHHHHHHHHhCC
Q 029938 73 FVPVLV--DGDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 73 ~vP~L~--~~g~~l~eS~aI~~yL~~~~~ 99 (185)
.-|-|. -+|+.++|+.||++|+..-|-
T Consensus 35 ~~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 35 SGPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp -S--EEE-S--S----HHHHHHHHTT--T
T ss_pred ccceeeecCCceEEecccHHHHHHHhhcC
Confidence 336774 568999999999999999764
No 156
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=83.02 E-value=1 Score=30.69 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 029938 151 VQTHIEKGFLALEKLL 166 (185)
Q Consensus 151 ~~~~~~~~l~~le~~L 166 (185)
..++++..|..++.++
T Consensus 61 ~i~~l~~~L~~l~~ll 76 (128)
T cd03199 61 YIAALNALLEELDPLI 76 (128)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4445555566666666
No 157
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=82.31 E-value=3.4 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.022 Sum_probs=22.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHh
Q 029938 143 GPDERLLWVQTHIEKGFLALEKLLID 168 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~le~~L~~ 168 (185)
.+++..+...+++.+.|+.+|+.|.+
T Consensus 22 ~~~~~~e~~~~~l~~~L~~ld~~L~~ 47 (134)
T cd03198 22 SNPALNENLEKGLLKALKKLDDYLNS 47 (134)
T ss_pred CChhhhHHHHHHHHHHHHHHHHHHcc
Confidence 35666788889999999999999986
No 158
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=81.79 E-value=13 Score=25.57 Aligned_cols=79 Identities=14% Similarity=-0.075 Sum_probs=50.7
Q ss_pred CCCCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCC--c--cceEEeCCeeeecHHHHHHH
Q 029938 18 SSSSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLH--F--VPVLVDGDVVVSDSYAILLY 93 (185)
Q Consensus 18 ~~~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~--~--vP~L~~~g~~l~eS~aI~~y 93 (185)
|..+++++++.-.|+.|-...-.|..+...-..+..+.... .....+...+.. . .=.++.+|..+.+|.|+++-
T Consensus 5 ~~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e--~g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 5 MKKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSE--PGQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCc--hhhhHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 44556667778999998877777777776666655554321 222333333322 1 11334789999999999998
Q ss_pred HHHhC
Q 029938 94 LEEKY 98 (185)
Q Consensus 94 L~~~~ 98 (185)
+...-
T Consensus 83 ~~~L~ 87 (137)
T COG3011 83 LRLLP 87 (137)
T ss_pred HHHCC
Confidence 88775
No 159
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=81.34 E-value=9.9 Score=23.96 Aligned_cols=60 Identities=17% Similarity=0.132 Sum_probs=35.8
Q ss_pred CceEEeecCCCchHHHHHHHHHH----cCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 84 (185)
..+.+|+.++|+.|+...-.++. .+-.+....++.. ..+++....-...+|++. .+|..+
T Consensus 15 ~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 15 LILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred eEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 34566667899999977665544 1113455566643 344555444456789776 566553
No 160
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=80.52 E-value=3.9 Score=27.08 Aligned_cols=35 Identities=17% Similarity=0.061 Sum_probs=27.9
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhcc--------CceEee
Q 029938 142 FGPDERLLWVQTHIEKGFLALEKLLIDFA--------AKLMCF 176 (185)
Q Consensus 142 ~~~~~~~~~~~~~~~~~l~~le~~L~~~~--------g~~~~g 176 (185)
..+.+.++.....+.+.|+.+|++|.++. ++|++|
T Consensus 21 ~~~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~G 63 (111)
T cd03204 21 HDNVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCG 63 (111)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCC
Confidence 35667788899999999999999998642 258875
No 161
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=79.25 E-value=4.8 Score=30.10 Aligned_cols=74 Identities=14% Similarity=0.085 Sum_probs=54.2
Q ss_pred CCceEEee-----cCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHH
Q 029938 20 SSKLVLYS-----YWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYL 94 (185)
Q Consensus 20 ~~~~~Ly~-----~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL 94 (185)
...+.||- .+.|++++.+.-+|...|++|+...|--+ +.-+.-.++.+-..+.|-|-.+|..+.+.--|...+
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~D--eelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m~ 215 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTD--EELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEMH 215 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCC--HHHHHHhhhhcCCCCccceeECCEeccCcHHHHHHh
Confidence 34577773 57899999999999999999987766422 123334456677889999999998888776665544
Q ss_pred H
Q 029938 95 E 95 (185)
Q Consensus 95 ~ 95 (185)
.
T Consensus 216 ~ 216 (227)
T KOG0911|consen 216 E 216 (227)
T ss_pred h
Confidence 3
No 162
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.41 E-value=9.6 Score=32.64 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=39.8
Q ss_pred ceEEeecCCCchHHHHHH----HHHHc-CCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRF----ALKLK-GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 85 (185)
.+++|..+.||+|-.+.- ++.+. +|..+.+.+. ..++..+.-....+|.++.+|..+.
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~------~~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS------HFPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc------ccHHHHHhCCceecCEEEECCEEEE
Confidence 588988899999886543 44555 6777777665 3355554555668999997765443
No 163
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=76.14 E-value=14 Score=22.08 Aligned_cols=56 Identities=14% Similarity=0.115 Sum_probs=34.1
Q ss_pred CceEEeecCCCchHHHHHHHHHH-----cCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKL-----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 82 (185)
.-+..++.++|+.|+...-.++. .++.+- .++.. ..+++........+|++. .+|.
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~--~i~~~----~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFV--KVDVD----ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEE--EEECC----CChhHHHhcCcccccEEEEEECCE
Confidence 34566667889999987776666 555444 44433 234444444556789876 4564
No 164
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=74.21 E-value=10 Score=24.10 Aligned_cols=57 Identities=11% Similarity=-0.076 Sum_probs=32.2
Q ss_pred CceEEeecCCCchHHHHHHHH--------HHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 21 SKLVLYSYWQSSCSWRVRFAL--------KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
..+..|+.++|+.|++..-.+ .+.+ .+....++........+++........+|++.
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 345666778999999765332 2232 45666666442111134555445566789776
No 165
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=74.01 E-value=19 Score=22.44 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=45.0
Q ss_pred CCceEEeecCCCchHHHHHHHH-----HHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee------ec
Q 029938 20 SSKLVLYSYWQSSCSWRVRFAL-----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV------SD 86 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l------~e 86 (185)
...+..++.++|+.|+..+=.+ .+.+ ++....|+.. ..+++........+|.+. .+|..+ ..
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~~~~g~~~ 92 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVKRYNGPRN 92 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEEEEESSSS
T ss_pred CCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEEEEECCCC
Confidence 3446666778999999776333 3333 6677777754 345555556677899887 666443 23
Q ss_pred HHHHHHHHHH
Q 029938 87 SYAILLYLEE 96 (185)
Q Consensus 87 S~aI~~yL~~ 96 (185)
...|.++|.+
T Consensus 93 ~~~l~~~i~~ 102 (103)
T PF00085_consen 93 AESLIEFIEK 102 (103)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 4566666654
No 166
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=73.99 E-value=1.2 Score=30.55 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029938 150 WVQTHIEKGFLALEKLLI 167 (185)
Q Consensus 150 ~~~~~~~~~l~~le~~L~ 167 (185)
.+.++++..|..+|.++.
T Consensus 59 ~~i~~l~~~L~~Le~ll~ 76 (132)
T PF04399_consen 59 ELIAELNADLEELEPLLA 76 (132)
T ss_dssp HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 455566666666776665
No 167
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=73.54 E-value=23 Score=23.25 Aligned_cols=60 Identities=10% Similarity=0.046 Sum_probs=37.3
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 85 (185)
-+..|+.++|+.|+...-.++...- ......|+.. ..++......-..+|++. .+|..+.
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~ 89 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVD 89 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEE
Confidence 3455556899999977666544211 2355666654 344555555677899887 6776654
No 168
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=73.25 E-value=16 Score=23.94 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=32.7
Q ss_pred eEEe-ecCCCchHHHHHHHHHHcCCC---ceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 23 LVLY-SYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 23 ~~Ly-~~~~s~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
+.++ +-++|++|+.++-+++...-. .+...++.. ..+++...-....+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 5555 447999999887666644322 344555543 345665555667899887
No 169
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.68 E-value=19 Score=24.02 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 148 LLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 148 ~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+...+.+++.|+.+|++|++ ++|+.|
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~--~~fl~G 82 (124)
T cd03202 56 REAALANFRAALEPLRATLKG--QPFLGG 82 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcC--CCccCC
Confidence 456778899999999999976 356654
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=71.07 E-value=28 Score=23.25 Aligned_cols=32 Identities=3% Similarity=-0.102 Sum_probs=20.6
Q ss_pred eEEeecCCCchHHHHHH----HHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRVRF----ALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~----~l~~~gi~~~~~~v~ 54 (185)
+..++.++||+|++..= +.+..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 55667899999997533 344445665555555
No 171
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=68.18 E-value=6.8 Score=33.18 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=44.9
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecH----HHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS----YAILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS----~aI~~yL 94 (185)
.+++|..+.||+|..++-++....+ .++...++- ..-+++...-....||.+..+|..+.+. ..+++.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~ 194 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDG----ALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKL 194 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEc----hhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 5889999999999977655544433 233333332 2556666666666899998666555442 3455565
Q ss_pred HHh
Q 029938 95 EEK 97 (185)
Q Consensus 95 ~~~ 97 (185)
.+.
T Consensus 195 ~~~ 197 (517)
T PRK15317 195 DTG 197 (517)
T ss_pred hcc
Confidence 543
No 172
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=67.79 E-value=6.1 Score=33.45 Aligned_cols=71 Identities=18% Similarity=0.090 Sum_probs=43.7
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCCC---ceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecH----HHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGLI---YEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDS----YAILLYL 94 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS----~aI~~yL 94 (185)
.+++|..+.||+|-.++-++....+. ++...++- ..-+++........||.+..+|..+.+. ..+++.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~----~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l 195 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDG----ALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKL 195 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEc----hhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHH
Confidence 58899999999999876666554432 23233332 2455666555666999998666555542 3444555
Q ss_pred HH
Q 029938 95 EE 96 (185)
Q Consensus 95 ~~ 96 (185)
.+
T Consensus 196 ~~ 197 (515)
T TIGR03140 196 EE 197 (515)
T ss_pred hh
Confidence 43
No 173
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=63.20 E-value=27 Score=22.72 Aligned_cols=72 Identities=15% Similarity=0.040 Sum_probs=40.7
Q ss_pred EeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCC-hhhhhhC---CCCccceEEeCCe-eeecHHHHHHHHHHh
Q 029938 25 LYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFS-PEFEELN---PLHFVPVLVDGDV-VVSDSYAILLYLEEK 97 (185)
Q Consensus 25 Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~-~~~~~~~---p~~~vP~L~~~g~-~l~eS~aI~~yL~~~ 97 (185)
|+++..||.|.+..-.+...+..-.+..++....+... .+...++ ....+ .+..+|. +..++.|+.+-+...
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~g~~~~~G~~A~~~l~~~~ 77 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRL-HLIDDGERVYRGSDAVLRLLRRL 77 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCee-EEecCCCEEEEcHHHHHHHHHHc
Confidence 35578999999887777777654444455542111110 1111122 22233 3355665 999999998886664
No 174
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=62.77 E-value=54 Score=24.14 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=34.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
.+++|+-++|++|..+.-+++.... ......++.. ..++.........+|++.
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~----~~~~~~~~~~V~~vPtl~ 191 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEAN----ENPDLAEKYGVMSVPKIV 191 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCC----CCHHHHHHhCCccCCEEE
Confidence 4676888999999988776664332 2333445543 445555555566799988
No 175
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=62.01 E-value=16 Score=25.95 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=26.1
Q ss_pred ceEEeecCCCchHH----HHHHHHHHc-CCCceEEEecCC
Q 029938 22 KLVLYSYWQSSCSW----RVRFALKLK-GLIYEYKAVDLS 56 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~----~vr~~l~~~-gi~~~~~~v~~~ 56 (185)
++++|++..||||. +++-+++.. ++.++.+++.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 47899999999987 444555555 888888877754
No 176
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=60.62 E-value=9.9 Score=25.06 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.1
Q ss_pred cceEE-eCCeeeecHHHHHHHHHHhCC
Q 029938 74 VPVLV-DGDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 74 vP~L~-~~g~~l~eS~aI~~yL~~~~~ 99 (185)
+|.+. .+|.+++.|..|+++...+|.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 46555 889999999999999999874
No 177
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=58.72 E-value=31 Score=22.90 Aligned_cols=27 Identities=15% Similarity=-0.006 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 149 LWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 149 ~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
+...+.+.+.|..+|+.|.++ ++|++|
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~-~~fl~G 55 (121)
T cd03201 29 DGTEQALLDELEALEDHLKEN-GPFING 55 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-CCccCC
Confidence 335567888999999999852 456664
No 178
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=58 Score=22.02 Aligned_cols=65 Identities=18% Similarity=0.094 Sum_probs=42.1
Q ss_pred CCCchHHHH----HHHHHHcCCCceEEEecCCCCCCCChhhh-hhCCCC-------ccceEE--e-CCeeeecHHHHHHH
Q 029938 29 WQSSCSWRV----RFALKLKGLIYEYKAVDLSKGEQFSPEFE-ELNPLH-------FVPVLV--D-GDVVVSDSYAILLY 93 (185)
Q Consensus 29 ~~s~~~~~v----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~-------~vP~L~--~-~g~~l~eS~aI~~y 93 (185)
++||.|.++ +=+|++++-+..++.|.-.. ++.++ .-||++ -||+|. . .++.+.+..+-...
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~----rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~ 118 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGN----RPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDH 118 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecC----CCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHH
Confidence 588888754 56777777777777776542 22222 223443 478887 3 35778888887777
Q ss_pred HHHh
Q 029938 94 LEEK 97 (185)
Q Consensus 94 L~~~ 97 (185)
|.+.
T Consensus 119 Lve~ 122 (128)
T KOG3425|consen 119 LVEM 122 (128)
T ss_pred HHHH
Confidence 7764
No 179
>PHA03075 glutaredoxin-like protein; Provisional
Probab=56.78 E-value=24 Score=23.64 Aligned_cols=67 Identities=21% Similarity=0.106 Sum_probs=47.6
Q ss_pred CceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEe-CCeeeecHHHHHHHHHHhC
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVD-GDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~aI~~yL~~~~ 98 (185)
.++.|++-+.|+-|+-+.-++.+..=+|+...|+.. +|.+. .|++=+|.. .+..+ -..+.+|+...+
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl-------SfFsK--~g~v~~lg~d~~y~l--Inn~~~~lgne~ 70 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNIL-------SFFSK--DGQVKVLGMDKGYTL--INNFFKHLGNEY 70 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEee-------eeecc--CCceEEEecccceeh--HHHHHHhhcccE
Confidence 468999999999999999999999899999999865 33322 245556653 33332 356777777544
No 180
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=56.39 E-value=22 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.084 Sum_probs=25.2
Q ss_pred CceEEeecCCCchHHH----HHHHHHHcCCCceEEEecC
Q 029938 21 SKLVLYSYWQSSCSWR----VRFALKLKGLIYEYKAVDL 55 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~----vr~~l~~~gi~~~~~~v~~ 55 (185)
+++.+|+...||||.- ++-+++..+++++.+++.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 4688999999999873 4445556677777666654
No 181
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=56.12 E-value=26 Score=23.57 Aligned_cols=62 Identities=15% Similarity=0.084 Sum_probs=30.9
Q ss_pred cCCCchHHHHH----HHHHHcCCCceEEEecCCCCCCCChhhhh-hCCC--------CccceEE--eCCeeeecHHHHHH
Q 029938 28 YWQSSCSWRVR----FALKLKGLIYEYKAVDLSKGEQFSPEFEE-LNPL--------HFVPVLV--DGDVVVSDSYAILL 92 (185)
Q Consensus 28 ~~~s~~~~~vr----~~l~~~gi~~~~~~v~~~~~~~~~~~~~~-~~p~--------~~vP~L~--~~g~~l~eS~aI~~ 92 (185)
..+||.|+++. -+++...-...++.|.-. .++.++. -||+ ..||+|. .++..|.|....-.
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG----~r~~Wkdp~n~fR~~p~~~l~~IPTLi~~~~~~rL~e~e~~~~ 110 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVG----DRPEWKDPNNPFRTDPDLKLKGIPTLIRWETGERLVEEECLNE 110 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE-------HHHHC-TTSHHHH--CC---SSSEEEECTSS-EEEHHHHH-H
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcC----CHHHhCCCCCCceEcceeeeeecceEEEECCCCccchhhhccH
Confidence 36889888664 555554334565555543 1222221 1232 3589998 55677777655443
Q ss_pred H
Q 029938 93 Y 93 (185)
Q Consensus 93 y 93 (185)
-
T Consensus 111 ~ 111 (119)
T PF06110_consen 111 D 111 (119)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=55.53 E-value=24 Score=24.46 Aligned_cols=73 Identities=21% Similarity=0.185 Sum_probs=47.0
Q ss_pred CCceEEeecCCCchHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhh-hC-CC--CccceEEeCCeeee---cHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEE-LN-PL--HFVPVLVDGDVVVS---DSYAILL 92 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~-~~-p~--~~vP~L~~~g~~l~---eS~aI~~ 92 (185)
.-+++.|..+.|++|..-.=.++.+|..+..+..+.. ..++. .+ |. ..-=+.+.+|..+= --.+|.+
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ 98 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIAR 98 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHH
Confidence 4468999999999999988889988888776655422 11111 11 11 11124455665543 2578999
Q ss_pred HHHHhC
Q 029938 93 YLEEKY 98 (185)
Q Consensus 93 yL~~~~ 98 (185)
.|++..
T Consensus 99 ll~~~p 104 (149)
T COG3019 99 LLAEKP 104 (149)
T ss_pred HHhCCC
Confidence 998876
No 183
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=55.05 E-value=62 Score=23.84 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=34.0
Q ss_pred ceEEeec---CCCchHHHHHHHHHHcC-----CCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 029938 22 KLVLYSY---WQSSCSWRVRFALKLKG-----LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (185)
Q Consensus 22 ~~~Ly~~---~~s~~~~~vr~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 82 (185)
.+.+|.. ++|+.|+.+.=+++... +.+..+.++-. ..++.....-...+|++. .+|.
T Consensus 22 ~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~----~~~~l~~~~~V~~~Pt~~~f~~g~ 88 (215)
T TIGR02187 22 EIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP----EDKEEAEKYGVERVPTTIILEEGK 88 (215)
T ss_pred EEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc----ccHHHHHHcCCCccCEEEEEeCCe
Confidence 4677766 78999997766665543 23333333321 344555555566889887 4553
No 184
>PTZ00051 thioredoxin; Provisional
Probab=54.53 E-value=49 Score=20.44 Aligned_cols=57 Identities=14% Similarity=0.020 Sum_probs=32.6
Q ss_pred eEEeecCCCchHHHHHHHHHHc---CCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 029938 23 LVLYSYWQSSCSWRVRFALKLK---GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~---gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 83 (185)
+..++.++|+.|+...-.++.. ...+....++.. ...++........+|++. .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 4556678999888665444332 123455555543 334455555566889776 55544
No 185
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=52.95 E-value=26 Score=21.45 Aligned_cols=25 Identities=28% Similarity=0.177 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 150 WVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 150 ~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
...+++.+.++.+|+.|+++ +|++|
T Consensus 19 ~~~~~~~~~l~~le~~L~~~--~yl~G 43 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDK--KFFFG 43 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCC--CccCC
Confidence 56778999999999999864 46653
No 186
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=50.04 E-value=68 Score=20.72 Aligned_cols=59 Identities=15% Similarity=0.057 Sum_probs=32.6
Q ss_pred CceEEeecCCCchHHHHHHHH-----HHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 029938 21 SKLVLYSYWQSSCSWRVRFAL-----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 83 (185)
+-+..++-++|+.|+...-.+ ++.+..+....|+.. ..+.......-..+|++. .+|..
T Consensus 26 ~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 26 PYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred eEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 345556678899887553222 333333444555543 233444444567889876 66644
No 187
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=49.54 E-value=60 Score=19.95 Aligned_cols=58 Identities=10% Similarity=0.033 Sum_probs=34.2
Q ss_pred ceEEeecCCCchHHHHHHHHHHc----CCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 83 (185)
-+..|+-++|+.|++..-.++.. ...+....++.. ..+++...-....+|++. .+|..
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~----~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE----ELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc----cCHHHHHhcCCccccEEEEEECCEE
Confidence 35556678999998776655542 334566666643 334444333455689776 56654
No 188
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=45.34 E-value=68 Score=19.48 Aligned_cols=53 Identities=30% Similarity=0.359 Sum_probs=33.9
Q ss_pred ceEEeecCCCchHHHH-----HHHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 22 KLVLYSYWQSSCSWRV-----RFALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~v-----r~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
.+.||....+|.+++. +++=++.+-+|+...||.. +.|+.....-.--.|+|+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~----~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVL----KQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcc----cCHhHHhhCCEEEechhh
Confidence 3678877676777654 4444555778999999876 455555444344456665
No 189
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.30 E-value=66 Score=25.36 Aligned_cols=74 Identities=15% Similarity=0.177 Sum_probs=48.5
Q ss_pred CceEEeecCCCchHHHHH-----HHHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeeee------cH
Q 029938 21 SKLVLYSYWQSSCSWRVR-----FALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVS------DS 87 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr-----~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~------eS 87 (185)
+-+.+++.++|+-|+... ++.+++|- |.+..|+.+ ..+.......-..||++. .+|..|- .-
T Consensus 45 PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D----~~p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPe 119 (304)
T COG3118 45 PVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD----AEPMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPE 119 (304)
T ss_pred CeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC----cchhHHHHhCcCcCCeEEEeeCCcCccccCCCCcH
Confidence 445666667888777553 34445553 777777765 566777777777899876 5665543 23
Q ss_pred HHHHHHHHHhCC
Q 029938 88 YAILLYLEEKYP 99 (185)
Q Consensus 88 ~aI~~yL~~~~~ 99 (185)
..|-++|+...+
T Consensus 120 sqlr~~ld~~~~ 131 (304)
T COG3118 120 SQLRQFLDKVLP 131 (304)
T ss_pred HHHHHHHHHhcC
Confidence 478888888765
No 190
>PRK09381 trxA thioredoxin; Provisional
Probab=42.14 E-value=89 Score=19.79 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=33.2
Q ss_pred CceEEeecCCCchHHHHHHHH-----HHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee
Q 029938 21 SKLVLYSYWQSSCSWRVRFAL-----KLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 84 (185)
..+..++.++||.|+...-.+ .+.+ .+....++.. ..+..........+|++. .+|..+
T Consensus 23 ~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 23 AILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNID----QNPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECC----CChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 334555567899888664333 3333 3555666654 233443334556789876 566544
No 191
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=40.58 E-value=55 Score=19.60 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.3
Q ss_pred ccceEEeCCeeeecHHHHHHHHHHhC
Q 029938 73 FVPVLVDGDVVVSDSYAILLYLEEKY 98 (185)
Q Consensus 73 ~vP~L~~~g~~l~eS~aI~~yL~~~~ 98 (185)
+=||+..+| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 459988888 8999999999999943
No 192
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=39.60 E-value=1.3e+02 Score=21.01 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=32.5
Q ss_pred eEEeecCCCchHHHHHHHHH-----HcCCCceEEEecCCCCCCCChhhhhhCCC------CccceEE--eCCeeee
Q 029938 23 LVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPL------HFVPVLV--DGDVVVS 85 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~vP~L~--~~g~~l~ 85 (185)
+..|+-++|+.|+...=.++ +.+-.++...|+.. ..++.....-- .++|++. .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd----~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG----RFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC----CCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 55566678998886643332 22233566667754 23343322222 2489887 6776654
No 193
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.44 E-value=61 Score=24.42 Aligned_cols=29 Identities=14% Similarity=0.037 Sum_probs=19.6
Q ss_pred CCceEEeecCCCchHH----HHHHHHHHcCCCc
Q 029938 20 SSKLVLYSYWQSSCSW----RVRFALKLKGLIY 48 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~----~vr~~l~~~gi~~ 48 (185)
.-++.+|+...||+|. +..-++...+..+
T Consensus 5 ~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~ 37 (225)
T COG2761 5 KIEIDVFSDVVCPWCYIGKRRLEKALAEYPQEV 37 (225)
T ss_pred eEEEEEEeCCcCchhhcCHHHHHHHHHhcCcce
Confidence 3457888899999998 4455555555443
No 194
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.28 E-value=86 Score=24.39 Aligned_cols=72 Identities=15% Similarity=0.167 Sum_probs=51.3
Q ss_pred CCceEEeecCCCc------hHHHHHHHHHHcCCCceEEEecCCCCCCCChhhhhhC----CCCccceEEeCCeeeecHHH
Q 029938 20 SSKLVLYSYWQSS------CSWRVRFALKLKGLIYEYKAVDLSKGEQFSPEFEELN----PLHFVPVLVDGDVVVSDSYA 89 (185)
Q Consensus 20 ~~~~~Ly~~~~s~------~~~~vr~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~L~~~g~~l~eS~a 89 (185)
...+.+|.....+ .|..||.+|+-.++-|+...|.+..+ ..+++..+- -.-.+|.+..+|..|.....
T Consensus 130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaee 207 (281)
T KOG2824|consen 130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEE 207 (281)
T ss_pred CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHH
Confidence 3468888644443 48899999999999999998887641 234444332 24578977799999988877
Q ss_pred HHHH
Q 029938 90 ILLY 93 (185)
Q Consensus 90 I~~y 93 (185)
|.+-
T Consensus 208 V~~L 211 (281)
T KOG2824|consen 208 VVRL 211 (281)
T ss_pred hhhh
Confidence 7653
No 195
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=36.15 E-value=1.1e+02 Score=19.07 Aligned_cols=56 Identities=13% Similarity=0.078 Sum_probs=31.2
Q ss_pred ceEEeecCCCchHHHHHHHHH-----HcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 029938 22 KLVLYSYWQSSCSWRVRFALK-----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 82 (185)
-+..++-++|+.|+...-.++ +.|. +.+..|+-. ..+++........+|++. .+|.
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~ 83 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCG----DDRMLCRSQGVNSYPSLYVFPSGM 83 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCC----ccHHHHHHcCCCccCEEEEEcCCC
Confidence 355566788998886544332 2232 455556654 234444444456789875 4453
No 196
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=35.70 E-value=61 Score=22.94 Aligned_cols=32 Identities=16% Similarity=0.216 Sum_probs=20.9
Q ss_pred eEEeecCCCchHHHH----HHHHHHcCCCceEEEec
Q 029938 23 LVLYSYWQSSCSWRV----RFALKLKGLIYEYKAVD 54 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~v----r~~l~~~gi~~~~~~v~ 54 (185)
+++|++..||||.-. +-+....++.++.+++.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 467888999998854 33444556666655554
No 197
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=34.55 E-value=50 Score=19.16 Aligned_cols=30 Identities=17% Similarity=-0.001 Sum_probs=19.0
Q ss_pred EEeecCCCchHHHHHHHHHHcCCCceEEEe
Q 029938 24 VLYSYWQSSCSWRVRFALKLKGLIYEYKAV 53 (185)
Q Consensus 24 ~Ly~~~~s~~~~~vr~~l~~~gi~~~~~~v 53 (185)
++|......-+..++-+|+..||++.....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~ 31 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNE 31 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S-
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECC
Confidence 677665666789999999999999876533
No 198
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=34.31 E-value=1.4e+02 Score=19.81 Aligned_cols=58 Identities=12% Similarity=0.063 Sum_probs=34.1
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCC----ceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLI----YEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 84 (185)
+.-++-.+|+.|+...=+++..--. .....|+.. ..+++....--..+|++. .+|..+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD----~~~~la~~~~V~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID----EVPDFNKMYELYDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC----CCHHHHHHcCCCCCCEEEEEECCEEE
Confidence 4445668999888664444332211 345566654 445666555556799887 666553
No 199
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=34.09 E-value=83 Score=22.71 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=19.4
Q ss_pred CCceEEeecCCCchHHHHHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFALKL 43 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l~~ 43 (185)
...+.+|..+.||+|++..-.+..
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 446778888999999999877764
No 200
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=34.08 E-value=1.2e+02 Score=18.93 Aligned_cols=54 Identities=11% Similarity=-0.084 Sum_probs=30.2
Q ss_pred CceEEeecCCCchHHHHHHHHH----HcCCCceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 21 SKLVLYSYWQSSCSWRVRFALK----LKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
..+..|+-++|+.|++..=.++ ..+-.+....++.. ..+++.....-..+|++.
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 3455666789999886533332 21212455556643 334444444556789776
No 201
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=34.00 E-value=58 Score=22.20 Aligned_cols=29 Identities=10% Similarity=-0.063 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 146 ERLLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 146 ~~~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
...+...+...+.++.+|+.|+++ +|++|
T Consensus 60 ~~~~~~~~~a~~~l~~l~~~L~~~--~~~~G 88 (137)
T cd03212 60 EVEAEIYRDAKECLNLLSQRLGES--QFFFG 88 (137)
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCC--CcCCC
Confidence 345667777888999999999864 55543
No 202
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=33.66 E-value=1.1e+02 Score=21.78 Aligned_cols=35 Identities=17% Similarity=0.013 Sum_probs=23.5
Q ss_pred eEEee-cCCCchHH-------HHHHHHHHcCCCceEEEecCCC
Q 029938 23 LVLYS-YWQSSCSW-------RVRFALKLKGLIYEYKAVDLSK 57 (185)
Q Consensus 23 ~~Ly~-~~~s~~~~-------~vr~~l~~~gi~~~~~~v~~~~ 57 (185)
+.||. -.+||-|+ +..-.+...+-|++.+.|+.++
T Consensus 36 V~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~ 78 (157)
T KOG2501|consen 36 VGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDR 78 (157)
T ss_pred EEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCC
Confidence 55663 34777666 3445566667789999999874
No 203
>PRK09266 hypothetical protein; Provisional
Probab=33.56 E-value=44 Score=25.52 Aligned_cols=61 Identities=25% Similarity=0.211 Sum_probs=39.0
Q ss_pred HHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeeeecHHHHHHHHHHhCCC
Q 029938 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVVSDSYAILLYLEEKYPQ 100 (185)
Q Consensus 40 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~aI~~yL~~~~~~ 100 (185)
.+...|++++...+.+..-....+-|+--+-.+-+||-..++..+.....|.+.|.+.|..
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~~ 260 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLRRAYEA 260 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHHHHHHh
Confidence 4556688888777765421112233443335688999988887776556788888777643
No 204
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=33.19 E-value=84 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=20.6
Q ss_pred eEEeecCCCchHH----HHHHHHHHc----CCCceEEEecC
Q 029938 23 LVLYSYWQSSCSW----RVRFALKLK----GLIYEYKAVDL 55 (185)
Q Consensus 23 ~~Ly~~~~s~~~~----~vr~~l~~~----gi~~~~~~v~~ 55 (185)
+++|++..||||. +++-+++.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4688899999998 344344444 45555555543
No 205
>PRK10996 thioredoxin 2; Provisional
Probab=32.71 E-value=1.6e+02 Score=19.95 Aligned_cols=59 Identities=8% Similarity=0.022 Sum_probs=34.6
Q ss_pred ceEEeecCCCchHHHHHHHHHH----cCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 84 (185)
.+..|+-++|+.|+...-.+.. .+-.+....++.. ..+++....--..+|++. .+|..+
T Consensus 55 vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~----~~~~l~~~~~V~~~Ptlii~~~G~~v 119 (139)
T PRK10996 55 VVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE----AERELSARFRIRSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC----CCHHHHHhcCCCccCEEEEEECCEEE
Confidence 3555667889988865433322 2334555666643 345555555566889877 667644
No 206
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=32.35 E-value=1.5e+02 Score=19.48 Aligned_cols=22 Identities=5% Similarity=-0.097 Sum_probs=13.8
Q ss_pred ceEEeecCCCchHHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKL 43 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~ 43 (185)
-+..++-.+|+.|++..-.+..
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~ 43 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAE 43 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhh
Confidence 3455556889999876444433
No 207
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=31.00 E-value=1.3e+02 Score=18.39 Aligned_cols=58 Identities=12% Similarity=0.016 Sum_probs=33.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHcC----CCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKG----LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 83 (185)
-+..++-++|+.|+...-.++... -.+....++.. ..+++...-....+|+++ .+|..
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 344555678998887655544322 23455566644 344555444556789887 66644
No 208
>PRK10721 hypothetical protein; Provisional
Probab=30.91 E-value=1.2e+02 Score=18.12 Aligned_cols=17 Identities=35% Similarity=0.364 Sum_probs=15.1
Q ss_pred eecHHHHHHHHHHhCCC
Q 029938 84 VSDSYAILLYLEEKYPQ 100 (185)
Q Consensus 84 l~eS~aI~~yL~~~~~~ 100 (185)
-++|..|+.-|.++||.
T Consensus 5 W~D~~dIA~~L~e~~Pd 21 (66)
T PRK10721 5 WTDSREIGEALYDAYPD 21 (66)
T ss_pred ccCHHHHHHHHHHHCCC
Confidence 46899999999999986
No 209
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=30.76 E-value=46 Score=19.47 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=15.6
Q ss_pred ceEEeec----CCCchHHHHHHHHHH
Q 029938 22 KLVLYSY----WQSSCSWRVRFALKL 43 (185)
Q Consensus 22 ~~~Ly~~----~~s~~~~~vr~~l~~ 43 (185)
+|+||-+ ..+.+|+||-.+|..
T Consensus 2 ~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 2 KMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred cceeeEeecCCchHHHHHHHHHHHhC
Confidence 4677754 466799999877753
No 210
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=30.46 E-value=41 Score=21.45 Aligned_cols=36 Identities=8% Similarity=-0.023 Sum_probs=20.3
Q ss_pred CceEEeecCCCchHHHHHHHHHH-------cCCCceEEEecCC
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKL-------KGLIYEYKAVDLS 56 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~-------~gi~~~~~~v~~~ 56 (185)
..+.+|+.++||+|++..-.+.. ..-.+..+.++..
T Consensus 7 ~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (112)
T PF13098_consen 7 PIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNID 49 (112)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecC
Confidence 34666778999999987554442 1113555666654
No 211
>TIGR03412 iscX_yfhJ FeS assembly protein IscX. Members of this protein family are YfhJ, a protein of the ISC system for iron-sulfur cluster assembly. Other genes in the system include iscSUA, hscBA, and fdx.
Probab=30.19 E-value=1.2e+02 Score=17.85 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=16.2
Q ss_pred ecHHHHHHHHHHhCCCCCCCCC
Q 029938 85 SDSYAILLYLEEKYPQRALLPA 106 (185)
Q Consensus 85 ~eS~aI~~yL~~~~~~~~l~p~ 106 (185)
++|..|+.-|.++||. ..|.
T Consensus 3 ~D~~eIA~~L~e~~pd--~dp~ 22 (63)
T TIGR03412 3 TDSQEIAIALAEAHPD--VDPK 22 (63)
T ss_pred cCHHHHHHHHHHHCCC--CCcc
Confidence 5789999999999985 4444
No 212
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=30.17 E-value=95 Score=20.03 Aligned_cols=59 Identities=7% Similarity=0.011 Sum_probs=32.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeeee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVVS 85 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 85 (185)
-+..++.++|+.|+...-.++...- ...+..|+.. .. ++....--..+|++. .+|..+.
T Consensus 27 vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~----~~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 27 VVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAE----KA-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEch----hh-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 3445566899988866544433211 2344556543 11 333333455789887 6776544
No 213
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=29.35 E-value=85 Score=23.94 Aligned_cols=21 Identities=0% Similarity=-0.080 Sum_probs=16.6
Q ss_pred ceEEeecCCCchHHHHHHHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALK 42 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~ 42 (185)
.+.+|.++.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 477778899999999865543
No 214
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=29.17 E-value=55 Score=23.83 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=18.7
Q ss_pred CCeeeecHHHHHHHHHHhCC
Q 029938 80 GDVVVSDSYAILLYLEEKYP 99 (185)
Q Consensus 80 ~g~~l~eS~aI~~yL~~~~~ 99 (185)
.+..|++|..|.+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 57889999999999999998
No 215
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.14 E-value=68 Score=19.66 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=20.6
Q ss_pred CCchHHHHHHHHHHcCCCceEEEec
Q 029938 30 QSSCSWRVRFALKLKGLIYEYKAVD 54 (185)
Q Consensus 30 ~s~~~~~vr~~l~~~gi~~~~~~v~ 54 (185)
--++++|+.-+++..|++|+..+-.
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSG 38 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSG 38 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCC
Confidence 3468999999999999999866443
No 216
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=29.01 E-value=1.7e+02 Score=19.08 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=13.3
Q ss_pred CceEEeecCCCchHHHHH
Q 029938 21 SKLVLYSYWQSSCSWRVR 38 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr 38 (185)
+.+..|+-++|++|++..
T Consensus 16 ~vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 16 PLLLLFSQPGCPYCDKLK 33 (125)
T ss_pred cEEEEEeCCCCHHHHHHH
Confidence 446666778999998764
No 217
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=28.68 E-value=73 Score=21.24 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.2
Q ss_pred CCccceEE-eCCeeeecHHHHHHHHHH
Q 029938 71 LHFVPVLV-DGDVVVSDSYAILLYLEE 96 (185)
Q Consensus 71 ~~~vP~L~-~~g~~l~eS~aI~~yL~~ 96 (185)
..++|.++ |+..++++...+.+-+..
T Consensus 81 i~k~PAVVfD~~~VVYG~tDV~~A~~~ 107 (114)
T PF07511_consen 81 ITKYPAVVFDDRYVVYGETDVARALAR 107 (114)
T ss_pred ccccCEEEEcCCeEEecccHHHHHHHH
Confidence 45899988 778999988877766654
No 218
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.57 E-value=1.1e+02 Score=21.74 Aligned_cols=33 Identities=9% Similarity=-0.030 Sum_probs=20.7
Q ss_pred ceEEeecCCCchHH----HHHHHHHHc--CCCceEEEec
Q 029938 22 KLVLYSYWQSSCSW----RVRFALKLK--GLIYEYKAVD 54 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~----~vr~~l~~~--gi~~~~~~v~ 54 (185)
++.+|.++.||+|. +++-+.+.. +++++.+...
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~ 40 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGG 40 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEecc
Confidence 47889999999988 333344443 5555554433
No 219
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=28.29 E-value=1.7e+02 Score=19.51 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCceEee
Q 029938 148 LLWVQTHIEKGFLALEKLLIDFAAKLMCF 176 (185)
Q Consensus 148 ~~~~~~~~~~~l~~le~~L~~~~g~~~~g 176 (185)
.+...+...+.|+.+++.|.++ +|++|
T Consensus 55 ~ee~~~~~~~~l~aLs~~Lg~~--~~l~G 81 (126)
T cd03211 55 LDQVIEEVDQCCQALSQRLGTQ--PYFFG 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC--CCCCC
Confidence 4456777889999999999874 56653
No 220
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=26.72 E-value=94 Score=19.61 Aligned_cols=57 Identities=9% Similarity=-0.034 Sum_probs=30.1
Q ss_pred ceEEeecCCCchHHHHHHHHHHc----C-CCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCee
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLK----G-LIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVV 83 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~----g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 83 (185)
.+..|+-++|+.|+...-.++.. + -...+..++.. .++.....--..+|++. .+|..
T Consensus 20 vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (102)
T cd02948 20 TVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGEL 83 (102)
T ss_pred EEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEE
Confidence 34555668999888665444321 1 12344445432 22333334455788776 56654
No 221
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=26.70 E-value=1.9e+02 Score=19.81 Aligned_cols=29 Identities=10% Similarity=0.063 Sum_probs=21.3
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhccC
Q 029938 143 GPDERLLWVQTHIEKGFLALEKLLIDFAA 171 (185)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~~le~~L~~~~g 171 (185)
+.+.+.+.-++-+++....+|..|+.+.|
T Consensus 17 s~e~K~~~Kr~lLP~Y~p~v~g~L~~g~g 45 (132)
T PF05944_consen 17 SIERKAEYKRELLPKYLPWVEGVLASGSG 45 (132)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHcCCC
Confidence 44556666666788888899999987544
No 222
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=26.29 E-value=1.7e+02 Score=19.04 Aligned_cols=29 Identities=17% Similarity=-0.048 Sum_probs=23.0
Q ss_pred eEEeecCCCchHHHHHHHHHHcCCCceEE
Q 029938 23 LVLYSYWQSSCSWRVRFALKLKGLIYEYK 51 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~gi~~~~~ 51 (185)
..|-....+|...-++.+++++|+|++..
T Consensus 58 ~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~ 86 (100)
T PF15608_consen 58 KVLVRDPDDPDLAHLLLLAEEKGVPVEVY 86 (100)
T ss_pred EEEECCCCCccHHHHHHHHHHcCCcEEEe
Confidence 34555677889999999999999998754
No 223
>PHA02278 thioredoxin-like protein
Probab=26.13 E-value=1.9e+02 Score=18.61 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=31.9
Q ss_pred eEEeecCCCchHHHHHHHHHHc----CCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee
Q 029938 23 LVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV 84 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 84 (185)
+.-|+-++|+.|+...=.++.. +.......++........+++....--..+|++. .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 4444568999888665444332 2222344444331100124444444556789887 677654
No 224
>PF08261 Carcinustatin: Carcinustatin peptide
Probab=25.96 E-value=27 Score=11.56 Aligned_cols=6 Identities=0% Similarity=-0.413 Sum_probs=3.3
Q ss_pred CceEee
Q 029938 171 AKLMCF 176 (185)
Q Consensus 171 g~~~~g 176 (185)
|+|.+|
T Consensus 2 gpy~fg 7 (8)
T PF08261_consen 2 GPYSFG 7 (8)
T ss_pred Cccccc
Confidence 556554
No 225
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=24.31 E-value=62 Score=24.34 Aligned_cols=33 Identities=6% Similarity=0.056 Sum_probs=21.4
Q ss_pred CceEEeecCCCchHHHHHHHHHHc-CCCceEEEe
Q 029938 21 SKLVLYSYWQSSCSWRVRFALKLK-GLIYEYKAV 53 (185)
Q Consensus 21 ~~~~Ly~~~~s~~~~~vr~~l~~~-gi~~~~~~v 53 (185)
.++.+|.++.||||++..--+... ...++...+
T Consensus 109 ~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 109 HVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred EEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 357788899999999986555442 233444433
No 226
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=24.07 E-value=1.1e+02 Score=20.75 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=16.8
Q ss_pred CCCceEEeecCCCchHHHHHHHH
Q 029938 19 SSSKLVLYSYWQSSCSWRVRFAL 41 (185)
Q Consensus 19 ~~~~~~Ly~~~~s~~~~~vr~~l 41 (185)
+...++.|....||+|.+.--.+
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~ 34 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEEL 34 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHH
T ss_pred CCeEEEEEECCCCHhHHHHHHHH
Confidence 35579999999999999874333
No 227
>COG2975 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.59 E-value=1e+02 Score=17.90 Aligned_cols=36 Identities=22% Similarity=0.129 Sum_probs=23.4
Q ss_pred eecHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHH
Q 029938 84 VSDSYAILLYLEEKYPQRALLPAADPQQRALNLQAASIIS 123 (185)
Q Consensus 84 l~eS~aI~~yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~ 123 (185)
-++|.-|++.|.++||. +-|+ .. -.....+|+..+.
T Consensus 3 WtD~~~Iae~Lyd~~pd--vDPk-tv-rFtdlh~wi~eL~ 38 (64)
T COG2975 3 WTDSQEIAEALYDAYPD--VDPK-TV-RFTDLHQWICELE 38 (64)
T ss_pred cchHHHHHHHHHhcCCC--CCcc-ee-ehhhHHHHHHhCc
Confidence 46899999999999974 5555 22 2344555655443
No 228
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=23.59 E-value=2.4e+02 Score=18.92 Aligned_cols=61 Identities=10% Similarity=0.022 Sum_probs=33.8
Q ss_pred eEEeecCCCchHHHHH-------HHHHHcCCCceEEEecCCCCCCCChhhhh--------hCCCCccceEE---eCCeee
Q 029938 23 LVLYSYWQSSCSWRVR-------FALKLKGLIYEYKAVDLSKGEQFSPEFEE--------LNPLHFVPVLV---DGDVVV 84 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr-------~~l~~~gi~~~~~~v~~~~~~~~~~~~~~--------~~p~~~vP~L~---~~g~~l 84 (185)
+..++-.+|++|++.- -+.....-.|..+.++... .++... ....+-+|+++ .+|..+
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~----~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~ 94 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE----RPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPF 94 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc----CcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEE
Confidence 3334567888888663 2233333467777777542 222211 12344678776 457777
Q ss_pred ecH
Q 029938 85 SDS 87 (185)
Q Consensus 85 ~eS 87 (185)
..+
T Consensus 95 ~~~ 97 (124)
T cd02955 95 FGG 97 (124)
T ss_pred eee
Confidence 766
No 229
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=23.29 E-value=1.8e+02 Score=17.54 Aligned_cols=57 Identities=11% Similarity=0.036 Sum_probs=31.2
Q ss_pred ceEEeecCCCchHHHHHHHHHH----cCCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCe
Q 029938 22 KLVLYSYWQSSCSWRVRFALKL----KGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDV 82 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 82 (185)
.+..++.++|+.|+...-.++. .+-.+....++.. ..+++....-...+|++. .+|.
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~P~~~~~~~g~ 79 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD----ENPDIAAKYGIRSIPTLLLFKNGK 79 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC----CCHHHHHHcCCCcCCEEEEEeCCc
Confidence 3445556788888866444332 2223555666643 334444444455789876 4553
No 230
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=23.26 E-value=63 Score=21.66 Aligned_cols=21 Identities=5% Similarity=0.066 Sum_probs=16.2
Q ss_pred CCceEEeecCCCchHHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFA 40 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~ 40 (185)
..+++.|..+.||+|++..-.
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~ 26 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPE 26 (154)
T ss_pred CEEEEEEECCCChhHHHhhHH
Confidence 446788888999999977543
No 231
>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=22.95 E-value=66 Score=26.13 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=51.3
Q ss_pred ceEEeCCeeeecHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcchhhHHHHHHHH----HHHhhcCchHHHHH
Q 029938 75 PVLVDGDVVVSDSYAILLYLEEKYPQRALLPAADPQQRALNLQAASIISSSMQPLHMLSLLK----YIEDKFGPDERLLW 150 (185)
Q Consensus 75 P~L~~~g~~l~eS~aI~~yL~~~~~~~~l~p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 150 (185)
+-+.+.++.+.|+.+|+..|...-. .-.-+- +..++..+..|+.-+...-.+--.-.+++ .+....+. +.
T Consensus 99 ~~~~~~dQ~~VEaa~la~aL~~a~~-~lW~~L-~~~~k~~l~~wL~~~~~~~~~~nNW~lF~v~v~~~L~~~G~----~~ 172 (361)
T PF10022_consen 99 GFIGDYDQRLVEAASLALALLRAPE-WLWDPL-DEEEKENLVDWLKQIRGIKPPDNNWLLFRVMVEAFLKKVGE----EY 172 (361)
T ss_pred CCcccchhhHhHHHHHHHHHHHCHH-HHHhhC-CHHHHHHHHHHHHhcCcCCCccchhHHHHHHHHHHHHHcCC----CC
Confidence 3344557999999999999988632 123455 77888888888886664422211111111 11111111 11
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 029938 151 VQTHIEKGFLALEKLLIDF 169 (185)
Q Consensus 151 ~~~~~~~~l~~le~~L~~~ 169 (185)
-.+++...|+.+|+.-...
T Consensus 173 d~~~i~~~l~~~e~~Y~Gd 191 (361)
T PF10022_consen 173 DEERIDYDLERIEEWYLGD 191 (361)
T ss_pred cHHHHHHHHHHHHHHhccC
Confidence 2266788888888877654
No 232
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=21.81 E-value=89 Score=23.47 Aligned_cols=58 Identities=16% Similarity=0.040 Sum_probs=35.6
Q ss_pred HHHHcCCCceEEEecCCCCCCCChhhhhhCCCCccceEEeCCeee--ecHHHHHHHHHHh
Q 029938 40 ALKLKGLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLVDGDVVV--SDSYAILLYLEEK 97 (185)
Q Consensus 40 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l--~eS~aI~~yL~~~ 97 (185)
.++..|++++...+.+..-....+-|+--+..+-+|+-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLTGTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEccccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 567778888877776543222233344334567889988777665 3445676666553
No 233
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=21.22 E-value=95 Score=19.13 Aligned_cols=22 Identities=14% Similarity=-0.189 Sum_probs=13.5
Q ss_pred CCceEEeecCCCchHHHHHHHH
Q 029938 20 SSKLVLYSYWQSSCSWRVRFAL 41 (185)
Q Consensus 20 ~~~~~Ly~~~~s~~~~~vr~~l 41 (185)
...+..++..+|+.|++..-.+
T Consensus 20 k~~ll~f~~~~C~~C~~~~~~l 41 (116)
T cd02966 20 KVVLVNFWASWCPPCRAEMPEL 41 (116)
T ss_pred CEEEEEeecccChhHHHHhHHH
Confidence 3445566667888887554333
No 234
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=21.17 E-value=1.4e+02 Score=15.38 Aligned_cols=25 Identities=20% Similarity=0.052 Sum_probs=18.9
Q ss_pred CCccceEEeCCeeeecHHHHHHHHH
Q 029938 71 LHFVPVLVDGDVVVSDSYAILLYLE 95 (185)
Q Consensus 71 ~~~vP~L~~~g~~l~eS~aI~~yL~ 95 (185)
.|.+|....++..+.....|.+|+.
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHHh
Confidence 4678876667788888888888775
No 235
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=21.12 E-value=3.7e+02 Score=20.21 Aligned_cols=75 Identities=9% Similarity=0.012 Sum_probs=41.8
Q ss_pred ceEEeecCCCchHHHHHHHHHHc----CCCceEEEecCCCCCCCChhhhhhCCCCccceEE--eCCeee------ecHHH
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLK----GLIYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV--DGDVVV------SDSYA 89 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l------~eS~a 89 (185)
-+..++-++|+.|+...-.++.. +-.+....++-. ..++......-..+|++. ++|..+ .....
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~----~~~~l~~~~~I~~~PTl~~f~~G~~v~~~~G~~s~e~ 130 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT----RALNLAKRFAIKGYPTLLLFDKGKMYQYEGGDRSTEK 130 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc----ccHHHHHHcCCCcCCEEEEEECCEEEEeeCCCCCHHH
Confidence 35556678999888654433222 212334444432 334444444556789776 666543 23456
Q ss_pred HHHHHHHhCCC
Q 029938 90 ILLYLEEKYPQ 100 (185)
Q Consensus 90 I~~yL~~~~~~ 100 (185)
|.+++.+.+..
T Consensus 131 L~~fi~~~~~~ 141 (224)
T PTZ00443 131 LAAFALGDFKK 141 (224)
T ss_pred HHHHHHHHHHh
Confidence 77777777643
No 236
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=20.96 E-value=72 Score=22.77 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=11.7
Q ss_pred Ceeee--cHHHHHHHHHHhCC
Q 029938 81 DVVVS--DSYAILLYLEEKYP 99 (185)
Q Consensus 81 g~~l~--eS~aI~~yL~~~~~ 99 (185)
|..|+ |-.+|++||++.++
T Consensus 48 Gl~Is~eer~avVkYLAd~~G 68 (167)
T PF09098_consen 48 GLPISPEERRAVVKYLADTQG 68 (167)
T ss_dssp -----HHHHHHHHHHHHHHT-
T ss_pred CCCCCHHHHHHHHHHHHHccC
Confidence 44444 56899999999986
No 237
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=20.88 E-value=1.9e+02 Score=17.15 Aligned_cols=22 Identities=9% Similarity=-0.058 Sum_probs=16.1
Q ss_pred eEEeecCCCchHHHHHHHHHHc
Q 029938 23 LVLYSYWQSSCSWRVRFALKLK 44 (185)
Q Consensus 23 ~~Ly~~~~s~~~~~vr~~l~~~ 44 (185)
+.+|....||+|+...-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 3577789999999776655543
No 238
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=20.77 E-value=1.4e+02 Score=18.84 Aligned_cols=54 Identities=15% Similarity=0.056 Sum_probs=27.5
Q ss_pred ceEEeecCCCchHHHHHHHHHHcCC---CceEEEecCCCCCCCChhhhhhCCCCccceEE
Q 029938 22 KLVLYSYWQSSCSWRVRFALKLKGL---IYEYKAVDLSKGEQFSPEFEELNPLHFVPVLV 78 (185)
Q Consensus 22 ~~~Ly~~~~s~~~~~vr~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 78 (185)
.+..|+-++|+.|++..-.++...- .+....|+-. ...++.....--..+|++.
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 3555566789988876544432221 1233444422 1233443333445789776
Done!