Query 029939
Match_columns 185
No_of_seqs 182 out of 1107
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:02:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029939.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029939hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02685 iron superoxide dismu 100.0 4.6E-51 1E-55 355.7 14.7 171 7-183 7-179 (299)
2 PLN02184 superoxide dismutase 100.0 9E-51 2E-55 339.9 13.7 138 45-183 6-143 (212)
3 COG0605 SodA Superoxide dismut 100.0 8.4E-50 1.8E-54 331.6 14.2 135 47-184 1-138 (204)
4 PRK10543 superoxide dismutase; 100.0 1.3E-49 2.8E-54 328.6 13.8 130 48-183 1-130 (193)
5 PRK10925 superoxide dismutase; 100.0 1.4E-48 3.1E-53 325.3 13.2 133 48-183 1-136 (206)
6 PLN02622 iron superoxide dismu 100.0 2.5E-47 5.5E-52 327.5 14.4 143 41-183 39-181 (261)
7 PTZ00078 Superoxide dismutase 100.0 4.1E-46 9E-51 307.7 13.7 124 53-182 1-124 (193)
8 PLN02471 superoxide dismutase 100.0 2.6E-45 5.7E-50 310.3 13.2 132 46-183 27-162 (231)
9 KOG0876 Manganese superoxide d 100.0 6.1E-44 1.3E-48 300.0 12.1 139 45-184 23-162 (234)
10 PF00081 Sod_Fe_N: Iron/mangan 100.0 4E-33 8.6E-38 201.9 4.6 82 49-135 1-82 (82)
11 PF02777 Sod_Fe_C: Iron/mangan 99.6 2.6E-16 5.5E-21 118.3 6.0 45 140-184 1-45 (106)
12 PF13348 Y_phosphatase3C: Tyro 60.1 10 0.00022 25.5 2.8 19 145-163 33-51 (68)
13 TIGR02118 conserved hypothetic 37.0 32 0.00069 24.8 2.4 22 64-86 10-31 (100)
14 PF07110 EthD: EthD domain; I 35.2 20 0.00043 24.8 1.0 23 64-86 1-23 (95)
15 COG4700 Uncharacterized protei 33.0 37 0.0008 29.1 2.4 22 72-93 227-248 (251)
16 KOG3935 Predicted glycerate ki 28.8 23 0.00049 32.5 0.5 23 9-31 332-354 (446)
17 KOG0394 Ras-related GTPase [Ge 26.9 36 0.00078 28.8 1.4 20 150-169 93-112 (210)
18 PF12826 HHH_2: Helix-hairpin- 25.5 45 0.00097 22.4 1.4 32 144-175 13-44 (64)
19 PF01764 Lipase_3: Lipase (cla 23.5 16 0.00035 27.0 -1.2 14 11-24 63-76 (140)
No 1
>PLN02685 iron superoxide dismutase
Probab=100.00 E-value=4.6e-51 Score=355.66 Aligned_cols=171 Identities=75% Similarity=1.287 Sum_probs=148.5
Q ss_pred cccCCCeeeeeCCCCCCCCCccccccccccc-cccccC-CccccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q 029939 7 AASSAPTIWLTGQGLGGRSTRLPFHWRNKKM-EQRKTG-GRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVD 84 (185)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~ 84 (185)
|..|-+...+..|| .|.| .||..||+ |..+.. ..+.++|+||+|||+|++|||+||++||++||+|||++||+
T Consensus 7 ~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Lp~LpY~y~aLEP~IS~etmelHh~kHhq~YV~ 81 (299)
T PLN02685 7 ASLSLSPALLPSQG---PSRR--MQWKGKRRTCTRKAVSGVITAKFELKPPPYPLDALEPHMSRETLEYHWGKHHRAYVD 81 (299)
T ss_pred cchhhccccCcccC---Cccc--chhhhhhhhhhhhccccccccceecCCCCCCcccchhhcCHHHHHHHHHHHHHHHHH
Confidence 34455556677775 3444 58998877 655555 34578899999999999999999999999999999999999
Q ss_pred HHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhhhhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHH
Q 029939 85 NLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEF 164 (185)
Q Consensus 85 ~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F 164 (185)
|||++++++++ +++++++|+..+....+...+||+|||+|||+|||+||+|+++++|++.|+++|+++|||||+||++|
T Consensus 82 ~LN~al~~t~l-~~~sl~eii~~~~~~~~~~~ifNnaggh~NH~fFWe~L~P~ggg~P~g~L~~aI~~~FGS~d~FK~~F 160 (299)
T PLN02685 82 NLNKQIVGTEL-DGMSLEDVVLITYNKGDMLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLQLIERDFGSFERFVEEF 160 (299)
T ss_pred HHHHHHcCchh-hcCCHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHhCCHHHHHHHH
Confidence 99999999888 88999999876655555556999999999999999999998878899999999999999999999999
Q ss_pred HHHHhcCCCccEEEEEEcC
Q 029939 165 KAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 165 ~~aA~s~fGSGWvWLv~d~ 183 (185)
+++|.++|||||+|||+++
T Consensus 161 ~~aA~s~fGSGWvWLV~~~ 179 (299)
T PLN02685 161 KSAAATQFGSGWAWLAYKA 179 (299)
T ss_pred HHHHhhCCCCeEEEEEEcc
Confidence 9999999999999999974
No 2
>PLN02184 superoxide dismutase [Fe]
Probab=100.00 E-value=9e-51 Score=339.88 Aligned_cols=138 Identities=75% Similarity=1.356 Sum_probs=127.7
Q ss_pred ccccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhh
Q 029939 45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (185)
Q Consensus 45 ~~~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~ 124 (185)
.++++|+||||||+|++|||+||++||++||+|||++||++||++++++++ +++++++|+......++...+||+|||+
T Consensus 6 ~~~~~~~lp~Lpy~~~aLeP~iS~~t~~~Hh~kHh~~YV~~LN~~l~~~~~-~~~~l~~ii~~~~~~~~~~~ifnnagg~ 84 (212)
T PLN02184 6 AVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTEL-EGKPLEHIIHSTYNNGDLLPAFNNAAQA 84 (212)
T ss_pred hhccceeCCCCCCCcccCccccCHHHHHHHHHHHHHHHHHHHHHHhcCchh-hcCCHHHHHHHhcccchHHHHHHhHHHH
Confidence 357789999999999999999999999999999999999999999999888 8889999987655554445689999999
Q ss_pred hhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcC
Q 029939 125 WNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 125 ~NH~ffw~~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~ 183 (185)
+||+|||+||+|+++++|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+
T Consensus 85 ~NH~~fw~~L~p~g~~~P~g~L~~~I~~~FGS~d~fk~~F~~~a~~~fGsGW~WLv~~~ 143 (212)
T PLN02184 85 WNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEEFNAAAATQFGAGWAWLAYSN 143 (212)
T ss_pred HHHHHHHHhcCCCCCCCCCHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCeEEEEEEEC
Confidence 99999999999987778999999999999999999999999999999999999999985
No 3
>COG0605 SodA Superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.4e-50 Score=331.59 Aligned_cols=135 Identities=52% Similarity=0.972 Sum_probs=124.1
Q ss_pred ccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccc--cCCCCCHHHHHHHhhcCCCCcchhcchhhh
Q 029939 47 SAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTE--LGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (185)
Q Consensus 47 ~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~--~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~ 124 (185)
+|.|+||+|||+|++|||+||++||++||+||||+||++||+++++++ + +++++++++......+. .++||+|||
T Consensus 1 ~~~~~Lp~Lpy~y~ALeP~is~et~~~Hh~kHH~~YV~~lN~~~~~~~~~~-~~~~~e~~~~~~~~~~~--~~~nn~~gh 77 (204)
T COG0605 1 RMAYELPELPYAYDALEPHISAETMELHHDKHHQTYVNNLNAALEGLTEEL-EDLSLEEIIKKLAGLPA--ALFNNAGGH 77 (204)
T ss_pred CCCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-ccCCHHHHHHHHhcccH--HHHhcchhh
Confidence 478999999999999999999999999999999999999999999843 6 88999988876543322 589999999
Q ss_pred hhhhhhhhccCCC-CCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcCC
Q 029939 125 WNHDFFWESMKPG-GGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAPY 184 (185)
Q Consensus 125 ~NH~ffw~~L~P~-~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~~ 184 (185)
+||+|||++|+|. ++++|+|+|+++|+++|||||+||++|+++|.++|||||+|||+|+.
T Consensus 78 ~NH~~fw~~l~p~~gg~~p~g~L~~aI~~~FGS~d~fk~~f~~aa~~~fGsGWawLv~~~~ 138 (204)
T COG0605 78 WNHSLFWENLSPGGGGGKPTGELAAAINKDFGSFDKFKEEFTAAAASVFGSGWAWLVYDPD 138 (204)
T ss_pred hhHHHHHhhcCCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhCCCCceEEEEECCC
Confidence 9999999999996 78899999999999999999999999999999999999999999974
No 4
>PRK10543 superoxide dismutase; Provisional
Probab=100.00 E-value=1.3e-49 Score=328.64 Aligned_cols=130 Identities=50% Similarity=0.974 Sum_probs=121.2
Q ss_pred cceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhhhhh
Q 029939 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNH 127 (185)
Q Consensus 48 ~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH 127 (185)
|+|+||+|||+|++|||+||++||++||+|||++||+|||++++++++ ++.++++|+.... ..+||+|||++||
T Consensus 1 m~~~lp~Lpy~~~~Lep~is~~~~~~H~~kHh~~YV~~LN~~~~~~~~-~~~~l~~ii~~~~-----~~ifnna~g~~NH 74 (193)
T PRK10543 1 MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIKGTAF-EGKSLEEIVRSSE-----GGVFNNAAQVWNH 74 (193)
T ss_pred CCCcCCCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHhcchh-hcCCHHHHHHhhH-----HHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999888 8889999885421 3599999999999
Q ss_pred hhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcC
Q 029939 128 DFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 128 ~ffw~~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~ 183 (185)
+|||++|+|.++++|+++|+++|+++|||+|+||++|+++|.++|||||+|||+|+
T Consensus 75 ~lfw~~L~p~~~~~p~~~L~~~I~~~FGS~e~fk~~f~~~a~~~fGsGW~WLv~~~ 130 (193)
T PRK10543 75 TFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNA 130 (193)
T ss_pred HHHHHhcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEECC
Confidence 99999999987778999999999999999999999999999999999999999985
No 5
>PRK10925 superoxide dismutase; Provisional
Probab=100.00 E-value=1.4e-48 Score=325.29 Aligned_cols=133 Identities=41% Similarity=0.708 Sum_probs=119.4
Q ss_pred cceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCCHHHHHHHhhcCCC--Ccchhcchhhh
Q 029939 48 AKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGT-ELGDGKSLEDVVIASYNKGD--LLPAFNNAAQA 124 (185)
Q Consensus 48 ~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t-~~~~~~~l~~ii~~~~~~~~--~~~ifN~ag~~ 124 (185)
|+|+||||||+|++|||+||++||++||+|||++||++||++++++ ++ +++++++|+......++ +..+||||||+
T Consensus 1 m~~~lp~Lpy~~~aLep~is~~t~~~H~~kHh~~YV~~LN~~~~~~~~~-~~~~l~~ii~~~~~~~~~~~~~i~nna~g~ 79 (206)
T PRK10925 1 MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALESLPEF-ANLPVEELITKLDQLPADKKTVLRNNAGGH 79 (206)
T ss_pred CCCcCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhccHHh-hcCCHHHHHHHHhhcchhhHHHHHHHHHHH
Confidence 4699999999999999999999999999999999999999999986 46 67899999865433332 23488999999
Q ss_pred hhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcC
Q 029939 125 WNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 125 ~NH~ffw~~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~ 183 (185)
+||+|||+||+|+ +.|++.|+++|+++|||||+||++|+++|.++|||||+|||+|+
T Consensus 80 ~NH~~fw~~L~P~--~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGSGW~wLv~~~ 136 (206)
T PRK10925 80 ANHSLFWKGLKKG--TTLQGDLKAAIERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKG 136 (206)
T ss_pred HHHHHHHhccCCC--CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeeEEEEEeC
Confidence 9999999999993 47999999999999999999999999999999999999999974
No 6
>PLN02622 iron superoxide dismutase
Probab=100.00 E-value=2.5e-47 Score=327.49 Aligned_cols=143 Identities=55% Similarity=1.051 Sum_probs=127.9
Q ss_pred ccCCccccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcc
Q 029939 41 KTGGRISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNN 120 (185)
Q Consensus 41 ~~~~~~~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ 120 (185)
+....+.+.|+||+|||++++|||+||++||++||+|||++||++||+++++++..+..++++++......+....+||+
T Consensus 39 ~~~~~~~~~~~L~~lpY~~~aLeP~iS~~tl~~H~~kHh~~YV~~LN~~l~~~~~~~~~~l~~li~~~~~~~~~~~vfnn 118 (261)
T PLN02622 39 QRASKVVAYYGLKTPPYPLDALEPYMSRRTLEVHWGEHHRGYVEGLNKQLAKDDILYGYTMDELVKVTYNNGNPLPEFNN 118 (261)
T ss_pred cccccccccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcCCHHHHHHHhhccchhHHHHHH
Confidence 33346778899999999999999999999999999999999999999999886422678899998655555445569999
Q ss_pred hhhhhhhhhhhhccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcC
Q 029939 121 AAQAWNHDFFWESMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 121 ag~~~NH~ffw~~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~ 183 (185)
|||++||+|||++|+|++++.|++.|+++|+++|||+|+||++|+++|.++|||||+|||+|+
T Consensus 119 a~g~~NH~~Fw~~L~P~g~~~P~g~L~~aI~~~FGS~d~Fk~~F~~aA~s~fGSGW~WLv~d~ 181 (261)
T PLN02622 119 AAQVWNHDFFWESMQPGGGDMPELGVLEQIEKDFGSFTNFREKFTEAALTLFGSGWVWLVLKR 181 (261)
T ss_pred HHhHHHHHHHHHccCCCCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCceEEEEEEeC
Confidence 999999999999999987778999999999999999999999999999999999999999986
No 7
>PTZ00078 Superoxide dismutase [Fe]; Provisional
Probab=100.00 E-value=4.1e-46 Score=307.71 Aligned_cols=124 Identities=49% Similarity=0.962 Sum_probs=116.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhhhhhhhhhh
Q 029939 53 KPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHDFFWE 132 (185)
Q Consensus 53 p~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ffw~ 132 (185)
|||||+|++|||+||++||++||+|||++||++||++++++++ ++.++++++.... ..+||+|||++||+|||+
T Consensus 1 p~Lpy~~~~Lep~iS~~~l~~H~~~hh~~YV~~lN~~~~~~~~-~~~~~~~ii~~~~-----~~~~n~a~g~~NH~lfw~ 74 (193)
T PTZ00078 1 PKLPYGLKELSPHLSEETLKFHYSKHHAGYVNKLNGLIKGTPL-ENKTLEELIKEYS-----GAVFNNAAQIWNHNFYWL 74 (193)
T ss_pred CCCCCCcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999887 7889999885431 258999999999999999
Q ss_pred ccCCCCCCCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEc
Q 029939 133 SMKPGGGGKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSA 182 (185)
Q Consensus 133 ~L~P~~~~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d 182 (185)
+|+|+++++|+++|+++|+++|||+|+||++|+++|.++|||||||||++
T Consensus 75 ~L~p~g~~~p~g~L~~~I~~~FGS~d~fk~~f~~~a~~~fGsGWvwLv~~ 124 (193)
T PTZ00078 75 SMGPNGGGEPTGEIKEKIDEKFGSFDNFKNEFSNVLSGHFGSGWGWLVLK 124 (193)
T ss_pred hcCCCCCCCCChHHHHHHHHHhCCHHHHHHHHHHHHhhCCCCeEEEEEEC
Confidence 99998777899999999999999999999999999999999999999985
No 8
>PLN02471 superoxide dismutase [Mn]
Probab=100.00 E-value=2.6e-45 Score=310.34 Aligned_cols=132 Identities=34% Similarity=0.585 Sum_probs=113.5
Q ss_pred cccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCCHHHHHHHhhcCCCCcchhcchhhh
Q 029939 46 ISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTEL-GDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (185)
Q Consensus 46 ~~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~-~~~~~l~~ii~~~~~~~~~~~ifN~ag~~ 124 (185)
..++|+||+|||++++|||+||++||++||+|||++||+|||+++++.+. .+..++++++.. . ..++||+||+
T Consensus 27 ~~~~~~lp~Lpy~~~aLep~iS~~tl~~Hh~kHh~~YV~~LN~l~~~l~~~~~~~~~~~i~~~---~---~~~~~n~gg~ 100 (231)
T PLN02471 27 GLQTFTLPDLPYDYGALEPAISGEIMQLHHQKHHQTYVTNYNKALEQLDQAVEKGDASAVVKL---Q---SAIKFNGGGH 100 (231)
T ss_pred ccccccCCCCCCCcccchhhcCHHHHHHHHhhhHHHHHHHHHHHHHHhHhhcccCCHHHHHhh---h---hhhhhHHHHH
Confidence 34679999999999999999999999999999999999999999987421 134456555432 1 2478999999
Q ss_pred hhhhhhhhccCCC--CCCC-CcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcC
Q 029939 125 WNHDFFWESMKPG--GGGK-PSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAP 183 (185)
Q Consensus 125 ~NH~ffw~~L~P~--~~~~-P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~ 183 (185)
+||+|||++|+|. +++. |++.|.++|+++|||+|+||++|+++|.++|||||+|||+|+
T Consensus 101 ~NH~~fw~~L~P~~~gg~~~p~g~L~~~I~~~FGS~d~fk~~f~~~A~~~fGSGW~WLv~d~ 162 (231)
T PLN02471 101 VNHSIFWKNLAPVSEGGGEPPHGSLGWAIDEHFGSLEALVKKMSAEGAAVQGSGWVWLGLDK 162 (231)
T ss_pred HhHHHHHhccCCCCCCCCCCCcHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEEEeC
Confidence 9999999999985 3334 679999999999999999999999999999999999999986
No 9
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-44 Score=300.00 Aligned_cols=139 Identities=45% Similarity=0.829 Sum_probs=124.8
Q ss_pred ccccceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhh
Q 029939 45 RISAKFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQA 124 (185)
Q Consensus 45 ~~~~~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~ 124 (185)
.++++++||+|||+|++|||.||+++|++||+|||++||++||+++++++...++...+++. ++..++....||+||++
T Consensus 23 ~v~~~~~lp~lp~~~~alep~~s~e~~~lh~~kHh~~yV~~ln~~~~~~~~~~~~~~~~~~~-t~~~~~~a~~Fn~~~~~ 101 (234)
T KOG0876|consen 23 AVRQKATLPDLPYDYDALEPIISAEIMELHWDKHHRTYVNNLNKAVEGLSELYSKLFVELSL-TAIAPQPAPKFNGAGHI 101 (234)
T ss_pred eeeeeecCCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhH-hccChhhhhhcCCcccc
Confidence 46788999999999999999999999999999999999999999999876424455555444 56677777899999999
Q ss_pred hhhhhhhhccCCCCCCCCcHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcCC
Q 029939 125 WNHDFFWESMKPGGGGKPSGE-LLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAPY 184 (185)
Q Consensus 125 ~NH~ffw~~L~P~~~~~P~g~-L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~~ 184 (185)
+||+|||++|.|+++++|.+. |.++|+++|||+|+|+++|++++.++|||||+|||+|++
T Consensus 102 ~Nh~fFw~~l~p~gg~~p~~~~L~~aI~~~FGS~ee~~k~~~~~~~~v~GsGW~WLv~~~~ 162 (234)
T KOG0876|consen 102 YNHSFFWENLAPPGGGKPEGEALLKAIDSSFGSLEEFVKELNAAAAAVFGSGWLWLVYNKE 162 (234)
T ss_pred ccchhhhhhccCCCCCCCchHHHHHHHHHhhcCHHHHHHHHHHHHHhhcCCceEEEEEcCC
Confidence 999999999999888888877 999999999999999999999999999999999999974
No 10
>PF00081 Sod_Fe_N: Iron/manganese superoxide dismutases, alpha-hairpin domain Note: SCOP classifies the two domains separately.; InterPro: IPR019831 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the N-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 3TQJ_A 1MY6_A 1BT8_A 1BSM_B 1AR5_A 1BS3_A 1AR4_A 1AVM_A 3DC6_C 1ZSP_B ....
Probab=99.97 E-value=4e-33 Score=201.95 Aligned_cols=82 Identities=49% Similarity=0.862 Sum_probs=68.6
Q ss_pred ceeeCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCHHHHHHHhhcCCCCcchhcchhhhhhhh
Q 029939 49 KFDLKPPPYPLNALEPHMSKDTLEFHWGKHHRAYVDNLNKQIVGTELGDGKSLEDVVIASYNKGDLLPAFNNAAQAWNHD 128 (185)
Q Consensus 49 ~f~lp~LpY~~~aLeP~IS~~tl~~H~~khh~~YV~~LN~~l~~t~~~~~~~l~~ii~~~~~~~~~~~ifN~ag~~~NH~ 128 (185)
+|+||+|||+|++|||+||++||++||+|||++||++||++++++++ +.+++++++... ....+||+|||+|||+
T Consensus 1 ~f~Lp~LpY~y~aLeP~is~~t~~~H~~kHh~~YV~~lN~~~~~~~~-~~~~~~~~~~~~----~~~~~~nn~gg~~NH~ 75 (82)
T PF00081_consen 1 KFELPPLPYAYDALEPYISEETMELHHDKHHQGYVNNLNKALEKTEL-EGKSLEEIISNA----LRAALRNNAGGHYNHS 75 (82)
T ss_dssp SS-----SSSTTTTTTTS-HHHHHHHHHTHHHHHHHHHHHHHTTCHH-HTSTHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccc-ccccchhhhhhh----hhHHHHHHcchhhhHH
Confidence 48999999999999999999999999999999999999999999988 888999998652 2246999999999999
Q ss_pred hhhhccC
Q 029939 129 FFWESMK 135 (185)
Q Consensus 129 ffw~~L~ 135 (185)
|||+||+
T Consensus 76 ~fw~~ls 82 (82)
T PF00081_consen 76 FFWENLS 82 (82)
T ss_dssp HHHHTB-
T ss_pred HHHHHcC
Confidence 9999995
No 11
>PF02777 Sod_Fe_C: Iron/manganese superoxide dismutases, C-terminal domain Note: SCOP classifies the two domains separately.; InterPro: IPR019832 Superoxide dismutases (SODs) (1.15.1.1 from EC) catalyse the conversion of superoxide radicals to molecular oxygen. Their function is to destroy the radicals that are normally produced within cells and are toxic to biological systems. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one [, , ]. This family includes both single metal-binding SODs and cambialistic SOD, which can bind either Mn or Fe. Fe/MnSODs are ubiquitous enzymes that are responsible for the majority of SOD activity in prokaryotes, fungi, blue-green algae and mitochondria. Fe/MnSODs are found as homodimers or homotetramers. The structure of Fe/MnSODs can be divided into two domains, an alpha N-terminal domain and an alpha/beta C-terminal domain, connected by a loop. The structure of the N-terminal domain consists of a two helices in an antiparallel hairpin, with a left-handed twist []. The structure of the C-terminal domain is of the alpha/beta type, and consists of a three-stranded antiparallel beta-sheet in the order 213, along with four helices in the arrangement alpha/beta(2)/alpha/beta/alpha(2) []. This entry represents the C-terminal domain of Manganese/iron superoxide dismutase. ; GO: 0004784 superoxide dismutase activity, 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 1KKC_Y 2GOJ_B 1UES_C 1UER_C 1QNN_A 1MY6_A 1MA1_F 1P7G_Q 3EVK_D 2GPC_A ....
Probab=99.64 E-value=2.6e-16 Score=118.28 Aligned_cols=45 Identities=62% Similarity=1.105 Sum_probs=41.8
Q ss_pred CCCcHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCccEEEEEEcCC
Q 029939 140 GKPSGELLGLIERDFGSFEKFLEEFKAAAATQFGSGWAWLVSAPY 184 (185)
Q Consensus 140 ~~P~g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSGWvWLv~d~~ 184 (185)
++|+++|+++|+++|||+|+||++|.++|.++|||||+|||+|+.
T Consensus 1 g~P~g~l~~~I~~~FGS~d~fk~~f~~~a~~~~GsGW~wLv~d~~ 45 (106)
T PF02777_consen 1 GKPSGKLKKAIEEDFGSFDNFKAEFTAAALSVFGSGWVWLVYDPS 45 (106)
T ss_dssp SS-THHHHHHHHHHHSSHHHHHHHHHHHHHHSSSSEEEEEEEETT
T ss_pred CCCCHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCeeeeeeccc
Confidence 479999999999999999999999999999999999999999953
No 12
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=60.11 E-value=10 Score=25.47 Aligned_cols=19 Identities=37% Similarity=0.702 Sum_probs=15.7
Q ss_pred HHHHHHHhhcCCHHHHHHH
Q 029939 145 ELLGLIERDFGSFEKFLEE 163 (185)
Q Consensus 145 ~L~~aI~~sFGS~d~fk~~ 163 (185)
...+.|++.|||+++|..+
T Consensus 33 ~~l~~i~~~yGs~e~Yl~~ 51 (68)
T PF13348_consen 33 AALDAIDERYGSVENYLRE 51 (68)
T ss_dssp HHHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 4567899999999998744
No 13
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=37.04 E-value=32 Score=24.80 Aligned_cols=22 Identities=18% Similarity=0.445 Sum_probs=20.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 029939 64 PHMSKDTLEFHWGKHHRAYVDNL 86 (185)
Q Consensus 64 P~IS~~tl~~H~~khh~~YV~~L 86 (185)
| +|.++++.||..+|.-.+.++
T Consensus 10 p-~~~e~F~~yy~~~H~pL~~~~ 31 (100)
T TIGR02118 10 P-EDGAAFDHHYRDTHVPLAQKL 31 (100)
T ss_pred C-CCHHHHHHHHHhccHHHHHhC
Confidence 6 899999999999999998876
No 14
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=35.24 E-value=20 Score=24.79 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=17.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 029939 64 PHMSKDTLEFHWGKHHRAYVDNL 86 (185)
Q Consensus 64 P~IS~~tl~~H~~khh~~YV~~L 86 (185)
|.+|.+.+.-||...|...|..+
T Consensus 1 Pgls~eeF~~~~~~~H~pl~~~~ 23 (95)
T PF07110_consen 1 PGLSPEEFHDYWREVHAPLVKRL 23 (95)
T ss_dssp --S-HHHHHHHHHHTHHHHHCCC
T ss_pred CCCCHHHHHHHHHHhHHHHHHHh
Confidence 78999999999999898877654
No 15
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=33.03 E-value=37 Score=29.13 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 029939 72 EFHWGKHHRAYVDNLNKQIVGT 93 (185)
Q Consensus 72 ~~H~~khh~~YV~~LN~~l~~t 93 (185)
.-||.|||++.++..|..++++
T Consensus 227 ~~H~rkh~reW~~~A~~~~~qs 248 (251)
T COG4700 227 RPHYRKHHREWIKTANERLKQS 248 (251)
T ss_pred chhHHHHHHHHHHHHHHHHHhh
Confidence 4699999999999999887654
No 16
>KOG3935 consensus Predicted glycerate kinase [Carbohydrate transport and metabolism]
Probab=28.85 E-value=23 Score=32.52 Aligned_cols=23 Identities=39% Similarity=0.796 Sum_probs=19.7
Q ss_pred cCCCeeeeeCCCCCCCCCccccc
Q 029939 9 SSAPTIWLTGQGLGGRSTRLPFH 31 (185)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~ 31 (185)
-.-||+-|.|+|.|||+..|++.
T Consensus 332 GGEptv~lsg~G~GGRnQelaL~ 354 (446)
T KOG3935|consen 332 GGEPTVHLSGPGKGGRNQELALS 354 (446)
T ss_pred CCCceEEecCCCCCcccHHHHHH
Confidence 45689999999999999988763
No 17
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=26.94 E-value=36 Score=28.83 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.5
Q ss_pred HHhhcCCHHHHHHHHHHHHh
Q 029939 150 IERDFGSFEKFLEEFKAAAA 169 (185)
Q Consensus 150 I~~sFGS~d~fk~~F~~aA~ 169 (185)
+.++|+++|+|+++|...|.
T Consensus 93 ~~~Sfe~L~~Wr~EFl~qa~ 112 (210)
T KOG0394|consen 93 NPKSFENLENWRKEFLIQAS 112 (210)
T ss_pred ChhhhccHHHHHHHHHHhcC
Confidence 44899999999999998875
No 18
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B.
Probab=25.51 E-value=45 Score=22.42 Aligned_cols=32 Identities=22% Similarity=0.367 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCcc
Q 029939 144 GELLGLIERDFGSFEKFLEEFKAAAATQFGSG 175 (185)
Q Consensus 144 g~L~~aI~~sFGS~d~fk~~F~~aA~s~fGSG 175 (185)
..-.+.|.+.|||+|++++.=.+.-..+-|-|
T Consensus 13 ~~~ak~L~~~f~sl~~l~~a~~e~L~~i~gIG 44 (64)
T PF12826_consen 13 EKTAKLLAKHFGSLEALMNASVEELSAIPGIG 44 (64)
T ss_dssp HHHHHHHHHCCSCHHHHCC--HHHHCTSTT--
T ss_pred HHHHHHHHHHcCCHHHHHHcCHHHHhccCCcC
Confidence 45677888999999998766444444444433
No 19
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=23.47 E-value=16 Score=27.02 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=12.2
Q ss_pred CCeeeeeCCCCCCC
Q 029939 11 APTIWLTGQGLGGR 24 (185)
Q Consensus 11 ~~~~~~~~~~~~~~ 24 (185)
..++++|||.|||-
T Consensus 63 ~~~i~itGHSLGGa 76 (140)
T PF01764_consen 63 DYSIVITGHSLGGA 76 (140)
T ss_dssp TSEEEEEEETHHHH
T ss_pred CccchhhccchHHH
Confidence 36899999999996
Done!