Query 029941
Match_columns 185
No_of_seqs 115 out of 134
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 09:22:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029941.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029941hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tv5a1 c.1.4.1 (A:158-566) Di 22.5 9 0.00066 31.6 0.1 18 82-99 70-87 (409)
2 d1ijwc_ a.4.1.2 (C:) HIN recom 17.2 27 0.002 20.9 1.5 21 77-97 2-22 (47)
3 d1xdza_ c.66.1.20 (A:) Glucose 15.9 12 0.00087 29.2 -0.6 27 84-110 2-29 (239)
4 d1unda_ a.14.1.1 (A:) Advillin 14.8 25 0.0018 20.4 0.8 12 81-92 2-13 (36)
5 d1yu8x1 a.14.1.1 (X:42-76) Vil 14.4 26 0.0019 20.2 0.8 12 81-92 1-12 (35)
6 d1znda1 b.60.1.1 (A:1-157) Maj 13.5 31 0.0022 22.9 1.2 27 75-102 120-146 (157)
7 d2a2ua_ b.60.1.1 (A:) Major ur 13.5 38 0.0027 22.3 1.7 28 75-103 120-147 (158)
8 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 12.6 55 0.004 21.0 2.3 33 79-111 22-58 (80)
9 d1d3ga_ c.1.4.1 (A:) Dihydroor 12.6 20 0.0014 28.5 -0.1 17 83-99 70-86 (367)
10 d1f54a_ a.39.1.5 (A:) Calmodul 12.3 34 0.0025 20.8 1.0 18 78-95 1-18 (77)
No 1
>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}
Probab=22.45 E-value=9 Score=31.62 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.3
Q ss_pred ChhhhhhhhhchhcCCCC
Q 029941 82 TDEDLDELKGCLDLGFGF 99 (185)
Q Consensus 82 TDlDLEELKGc~DLGFgF 99 (185)
.|-+-+.++++.+|||||
T Consensus 70 ~dk~~~~i~~~~~lGfG~ 87 (409)
T d1tv5a1 70 FDKNGVCIDSILKLGFSF 87 (409)
T ss_dssp TTTTCSSHHHHHTTTCSE
T ss_pred cCCCHHHHHHHHhcCCCe
Confidence 667789999999999999
No 2
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=17.25 E-value=27 Score=20.91 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=19.1
Q ss_pred ccCCCChhhhhhhhhchhcCC
Q 029941 77 RTKSLTDEDLDELKGCLDLGF 97 (185)
Q Consensus 77 rsKSLTDlDLEELKGc~DLGF 97 (185)
|.+.||++.+++.+-.++-|.
T Consensus 2 R~~~lt~~q~~~a~~l~~~G~ 22 (47)
T d1ijwc_ 2 RPRAINKHEQEQISRLLEKGH 22 (47)
T ss_dssp CCCSSCHHHHHHHHHHHHTTC
T ss_pred CCCcCCHHHHHHHHHHHHCCC
Confidence 678899999999999999886
No 3
>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}
Probab=15.88 E-value=12 Score=29.22 Aligned_cols=27 Identities=15% Similarity=0.304 Sum_probs=19.2
Q ss_pred hhhhhhh-hchhcCCCCCCCCchhhhcc
Q 029941 84 EDLDELK-GCLDLGFGFSYDEIPELCNT 110 (185)
Q Consensus 84 lDLEELK-Gc~DLGFgFs~E~~PrL~~t 110 (185)
+++|||+ |+.++||.++.+.+..|...
T Consensus 2 m~~e~l~~~l~~~g~~ls~~~~~~l~~y 29 (239)
T d1xdza_ 2 MNIEEFTSGLAEKGISLSPRQLEQFELY 29 (239)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4566664 88899999998876655443
No 4
>d1unda_ a.14.1.1 (A:) Advillin {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.78 E-value=25 Score=20.42 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=9.3
Q ss_pred CChhhhhhhhhc
Q 029941 81 LTDEDLDELKGC 92 (185)
Q Consensus 81 LTDlDLEELKGc 92 (185)
|||+|++++=|+
T Consensus 2 Lsd~dF~~vFgm 13 (36)
T d1unda_ 2 LSEQDFVSVFGI 13 (36)
T ss_dssp CCHHHHHHHHSS
T ss_pred CCHHHHHHHHCc
Confidence 788999888554
No 5
>d1yu8x1 a.14.1.1 (X:42-76) Villin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=14.42 E-value=26 Score=20.20 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=9.1
Q ss_pred CChhhhhhhhhc
Q 029941 81 LTDEDLDELKGC 92 (185)
Q Consensus 81 LTDlDLEELKGc 92 (185)
|||+|++++=|+
T Consensus 1 Lsd~dF~~vfgm 12 (35)
T d1yu8x1 1 LSDEDFKAVFGM 12 (35)
T ss_dssp SCHHHHHHHHSS
T ss_pred CCHHHHHHHHCC
Confidence 688888887553
No 6
>d1znda1 b.60.1.1 (A:1-157) Major urinary protein/alpha-2u-globulin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.53 E-value=31 Score=22.86 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=21.2
Q ss_pred ccccCCCChhhhhhhhhchhcCCCCCCC
Q 029941 75 LKRTKSLTDEDLDELKGCLDLGFGFSYD 102 (185)
Q Consensus 75 lrrsKSLTDlDLEELKGc~DLGFgFs~E 102 (185)
+.|...|+++.+++++.+.. ..||+.+
T Consensus 120 lsR~~~~~~~~~~~f~~~~~-~~G~~~~ 146 (157)
T d1znda1 120 YGREPDLSSDIKERFAQLCE-EHGILRE 146 (157)
T ss_dssp EESSSCCCHHHHHHHHHHHH-HTTCCGG
T ss_pred EecCCCCCHHHHHHHHHHHH-HcCCCHH
Confidence 57899999999999999876 4444444
No 7
>d2a2ua_ b.60.1.1 (A:) Major urinary protein/alpha-2u-globulin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=13.51 E-value=38 Score=22.33 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=22.9
Q ss_pred ccccCCCChhhhhhhhhchhcCCCCCCCC
Q 029941 75 LKRTKSLTDEDLDELKGCLDLGFGFSYDE 103 (185)
Q Consensus 75 lrrsKSLTDlDLEELKGc~DLGFgFs~E~ 103 (185)
+.|++.++++.+++++.+.. .+||+++.
T Consensus 120 lsR~~~~~~~~~~~~~~~~~-~~G~~~~~ 147 (158)
T d2a2ua_ 120 YGRTKDLSSDIKEKFAKLCE-AHGITRDN 147 (158)
T ss_dssp EESSSSCCHHHHHHHHHHHH-TTTCCGGG
T ss_pred EcCCCCCCHHHHHHHHHHHH-HcCCCHHH
Confidence 57899999999999999887 56666654
No 8
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=12.62 E-value=55 Score=20.98 Aligned_cols=33 Identities=12% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCChhhhhhhhhchhc-CCCCCCCC---chhhhccc
Q 029941 79 KSLTDEDLDELKGCLDL-GFGFSYDE---IPELCNTL 111 (185)
Q Consensus 79 KSLTDlDLEELKGc~DL-GFgFs~E~---~PrL~~tL 111 (185)
-.+|+..+++|+.+++- ++.-.+.+ +-.||..|
T Consensus 22 t~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~ 58 (80)
T d1wh7a_ 22 TKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAET 58 (80)
T ss_dssp CCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHH
Confidence 36999999999999884 55443333 34566553
No 9
>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.58 E-value=20 Score=28.50 Aligned_cols=17 Identities=35% Similarity=0.833 Sum_probs=14.8
Q ss_pred hhhhhhhhhchhcCCCC
Q 029941 83 DEDLDELKGCLDLGFGF 99 (185)
Q Consensus 83 DlDLEELKGc~DLGFgF 99 (185)
|-+-++++.+.++||||
T Consensus 70 ~~~~~~i~~~~~~G~G~ 86 (367)
T d1d3ga_ 70 DKHGEAVDGLYKMGFGF 86 (367)
T ss_dssp STTSSSHHHHHHHTCSE
T ss_pred CCCHHHHHHHhhcCCcE
Confidence 45678899999999999
No 10
>d1f54a_ a.39.1.5 (A:) Calmodulin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.31 E-value=34 Score=20.83 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=15.2
Q ss_pred cCCCChhhhhhhhhchhc
Q 029941 78 TKSLTDEDLDELKGCLDL 95 (185)
Q Consensus 78 sKSLTDlDLEELKGc~DL 95 (185)
++.||+++++|+|-++..
T Consensus 1 ~~~lt~eqi~el~~~F~~ 18 (77)
T d1f54a_ 1 SSNLTEEQIAEFKEAFAL 18 (77)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 457999999999988776
Done!