BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029942
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1,
chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1
SV=1
Length = 911
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/141 (82%), Positives = 133/141 (94%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+V ILARESGLKL+L LPV++ VP+PL+ACASAEEFM++LPQFD+EL+KQR+EAE AGE
Sbjct: 771 KVTILARESGLKLDLEGLPVQNLVPKPLQACASAEEFMEKLPQFDEELSKQREEAEAAGE 830
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLRYVGVVDA+ K+G VEL+RYK+DHPFAQLSG+DNIIAFTTKRYKEQPLIVRGPGAGAQ
Sbjct: 831 VLRYVGVVDAVEKKGTVELKRYKKDHPFAQLSGADNIIAFTTKRYKEQPLIVRGPGAGAQ 890
Query: 165 VTAGGIFSDILRLASYLGAPS 185
VTAGGIFSDILRLA YLGAPS
Sbjct: 891 VTAGGIFSDILRLAFYLGAPS 911
>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2,
chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1
SV=1
Length = 916
Score = 246 bits (627), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 113/141 (80%), Positives = 132/141 (93%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+VIILARESGLKL+L+DLP+RS VPEPLK C S EEFM++LPQ+D +LAK+R +AE++GE
Sbjct: 776 KVIILARESGLKLDLADLPIRSLVPEPLKGCTSVEEFMEKLPQYDGDLAKERLDAENSGE 835
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLRYVGVVDA+N++G VELRRYK++HPFAQL+GSDNIIAFTT RYK+ PLIVRGPGAGAQ
Sbjct: 836 VLRYVGVVDAVNQKGTVELRRYKKEHPFAQLAGSDNIIAFTTTRYKDHPLIVRGPGAGAQ 895
Query: 165 VTAGGIFSDILRLASYLGAPS 185
VTAGGIFSDILRLASYLGAPS
Sbjct: 896 VTAGGIFSDILRLASYLGAPS 916
>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2,
chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1
Length = 917
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 108/141 (76%), Positives = 130/141 (92%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+V++LARESGL+LELSD+PV+S VPE L +C+SA+EFM++LP FD++ A+QR +AE AGE
Sbjct: 777 KVVVLARESGLRLELSDIPVKSLVPETLASCSSADEFMQKLPSFDEDWARQRSDAEAAGE 836
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLRYVG +DA+N+ G+VELRRY+RDHPFAQLSGSDNIIAFTT RYKEQPLIVRGPGAGA+
Sbjct: 837 VLRYVGALDAVNRSGQVELRRYRRDHPFAQLSGSDNIIAFTTSRYKEQPLIVRGPGAGAE 896
Query: 165 VTAGGIFSDILRLASYLGAPS 185
VTAGG+F DILRLASYLGAPS
Sbjct: 897 VTAGGVFCDILRLASYLGAPS 917
>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1,
chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1
Length = 920
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 109/141 (77%), Positives = 129/141 (91%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+VIILARESGL LELSD+PVRS VPE LK+C SA+E+M++LP FD++ A++R+ AE AGE
Sbjct: 780 KVIILARESGLGLELSDIPVRSLVPEALKSCTSADEYMQKLPSFDEDWARERKNAEAAGE 839
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLRYVGVVD ++K+G+VELR YKRDHPFAQLSGSDNIIAFTT RYK+QPLIVRGPGAGA+
Sbjct: 840 VLRYVGVVDVVSKKGQVELRAYKRDHPFAQLSGSDNIIAFTTSRYKDQPLIVRGPGAGAE 899
Query: 165 VTAGGIFSDILRLASYLGAPS 185
VTAGG+F DILRL+SYLGAPS
Sbjct: 900 VTAGGVFCDILRLSSYLGAPS 920
>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic
(Fragment) OS=Daucus carota PE=1 SV=1
Length = 921
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 107/141 (75%), Positives = 130/141 (92%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+VIILAR SGLKLELSD+PV+S VPEPL+ ASAEEF+ QLPQFD ++ ++R++AE+AGE
Sbjct: 781 KVIILARGSGLKLELSDIPVQSLVPEPLRGIASAEEFLLQLPQFDSDMTRKREDAENAGE 840
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLRYVGVVDA+N++G VEL+RYK++HPFAQLSGSDNI AFTT+RY +QP I+RGPGAGA+
Sbjct: 841 VLRYVGVVDAVNQKGVVELKRYKKEHPFAQLSGSDNINAFTTERYNKQPPIIRGPGAGAE 900
Query: 165 VTAGGIFSDILRLASYLGAPS 185
VTAGG+FSDILRLASYLGAPS
Sbjct: 901 VTAGGVFSDILRLASYLGAPS 921
>sp|O94671|DHOM_SCHPO Probable homoserine dehydrogenase OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC776.03 PE=1 SV=1
Length = 376
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 45 QVIILARESGLKLE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
+V IL+R +G+ +E S PV+S +PEPLK+ +AEEF+ LP FD E A R+EAE G
Sbjct: 231 KVTILSRIAGVHVESASSFPVKSLIPEPLKSAVNAEEFLAGLPNFDSEFASMREEAEKEG 290
Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPL 154
+V+R+VG D NK V+L +Y HPFA L SDNII+FTTKRY +PL
Sbjct: 291 KVVRFVGEADVANKTTLVKLEKYDASHPFANLQSSDNIISFTTKRYHTRPL 341
>sp|Q5B998|DHOM_EMENI Homoserine dehydrogenase OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN2882
PE=1 SV=1
Length = 368
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 96/153 (62%), Gaps = 11/153 (7%)
Query: 30 ECNSMRIRLKKTFFLQVIILARESGLKLELSD-LPVRSFVPEPLKACASAEE----FMKQ 84
+ N M + K T ILAR +GL ++ D P+ S +P L + S+ + FM +
Sbjct: 218 DLNGMDVARKLT------ILARIAGLDVQSPDSFPIESLIPAELTSLPSSADGIAQFMAR 271
Query: 85 LPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAF 144
LP+FD ++A ++ AE AG+V+RYVG VD KE RV L+++ +D A L GSDNII+F
Sbjct: 272 LPEFDSQMAAIKEGAEKAGKVVRYVGSVDVAKKEVRVGLQQFDKDSAIAGLKGSDNIISF 331
Query: 145 TTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRL 177
T+RY PLIV+G GAG VTA G+ +D+L++
Sbjct: 332 YTRRYGSNPLIVQGAGAGGDVTAMGVTADLLKV 364
>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia
marcescens GN=thrA PE=3 SV=1
Length = 819
Score = 112 bits (281), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 87/138 (63%), Gaps = 6/138 (4%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+++ILARE+G KLELSD+ V +P A + F+ +LP+ DKE A+ A + G+
Sbjct: 682 KLLILAREAGYKLELSDIEVEPVLPPSFDASGDVDTFLARLPELDKEFARNVANAAEQGK 741
Query: 105 VLRYVGVVDAINKEGRVELRRYKRD--HPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
VLRYVG++D EGR ++R D P ++ +N +AF ++ Y+ PL++RG GAG
Sbjct: 742 VLRYVGLID----EGRCKVRIEAVDGNDPLYKVKNGENALAFYSRYYQPLPLVLRGYGAG 797
Query: 163 AQVTAGGIFSDILRLASY 180
VTA G+F+D+LR S+
Sbjct: 798 NDVTAAGVFADLLRTLSW 815
>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=thrA PE=3 SV=1
Length = 815
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 85/134 (63%), Gaps = 6/134 (4%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+++ILARE+G++LELSD+ V +P+ SA+EFM LPQ D+E + A+ G+
Sbjct: 682 KLLILAREAGIELELSDVEVEGVLPKGFSDGKSADEFMAMLPQLDEEFKTRVATAKAEGK 741
Query: 105 VLRYVGVVDAINKEG--RVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
VLRYVG + EG +V + ++P ++ +N +AF T+ Y+ PL++RG GAG
Sbjct: 742 VLRYVGKI----SEGKCKVSIVAVDLNNPLYKVKDGENALAFYTRYYQPIPLLLRGYGAG 797
Query: 163 AQVTAGGIFSDILR 176
VTA GIF+DILR
Sbjct: 798 NAVTAAGIFADILR 811
>sp|P31116|DHOM_YEAST Homoserine dehydrogenase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=HOM6 PE=1 SV=1
Length = 359
Score = 102 bits (255), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 94/138 (68%), Gaps = 2/138 (1%)
Query: 45 QVIILARESGLKLEL-SDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAG 103
+V I+ R SG+++E + PV+S +P+PL++ SA+EF+++L +DK+L + ++EA
Sbjct: 223 KVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATEN 282
Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGA 163
+VLR++G VD K V + +Y HPFA L GSDN+I+ TKRY P++++G GAGA
Sbjct: 283 KVLRFIGKVDVATKSVSVGIEKYDYSHPFASLKGSDNVISIKTKRY-TNPVVIQGAGAGA 341
Query: 164 QVTAGGIFSDILRLASYL 181
VTA G+ D++++A L
Sbjct: 342 AVTAAGVLGDVIKIAQRL 359
>sp|P00562|AK2H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 2
OS=Escherichia coli (strain K12) GN=metL PE=1 SV=3
Length = 810
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 55/142 (38%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
Query: 40 KTFFLQVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEA 99
K +++ILARE+G +E + V S VP + S + F + + ++++ ++ + A
Sbjct: 671 KDVMRKLVILAREAGYNIEPDQVRVESLVPAHCEG-GSIDHFFENGDELNEQMVQRLEAA 729
Query: 100 EDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGP 159
+ G VLRYV DA N + RV + + DHP A L DN+ A ++ Y++ PL++RGP
Sbjct: 730 REMGLVLRYVARFDA-NGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGP 788
Query: 160 GAGAQVTAGGIFSDILRLASYL 181
GAG VTAG I SDI RLA L
Sbjct: 789 GAGRDVTAGAIQSDINRLAQLL 810
>sp|Q89AR4|AKH_BUCBP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera
aphidicola subsp. Baizongia pistaciae (strain Bp)
GN=thrA PE=3 SV=1
Length = 816
Score = 100 bits (248), Expect = 8e-21, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+++ILARE G KLEL D+ + +P+ ++ +F+ +L + D+ + ++A G+
Sbjct: 683 KLLILAREVGYKLELKDIKIEPLLPKEFNNISNTTDFITKLKELDQIFCNRVKKARKLGK 742
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDH--PFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
LR+VG+ IN++G +++ + DH P + +N +AF +K Y+ PL++RG GAG
Sbjct: 743 RLRFVGI---INQKGNCQVKIDEVDHNDPLYNIKNGENALAFYSKYYQPIPLVLRGYGAG 799
Query: 163 AQVTAGGIFSDILRL 177
VTA GIFSD+LR+
Sbjct: 800 NNVTASGIFSDVLRI 814
>sp|Q8K9U9|AKH_BUCAP Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=thrA PE=3 SV=1
Length = 814
Score = 99.8 bits (247), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 82/133 (61%), Gaps = 1/133 (0%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
++++LARE G +EL D+ + +PE K ++EEF+ +L + D +++ +A D G
Sbjct: 681 KLLVLAREIGYSIELKDISIEPILPERFKKYQNSEEFLFKLKELDSFFSERVNKARDIGN 740
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLR++G ++ N + V++ ++P ++ +N + F T Y+ PL++RG GAG
Sbjct: 741 VLRFIGSIEK-NGKCSVKIEEINSNNPLYKVKNGENALTFYTNYYQPIPLVLRGYGAGND 799
Query: 165 VTAGGIFSDILRL 177
VTA G+FSD+LR+
Sbjct: 800 VTASGVFSDLLRI 812
>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1
OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2
Length = 820
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/138 (37%), Positives = 82/138 (59%), Gaps = 5/138 (3%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+++ILARE+G +LEL+D+ + +P A FM L Q D A + +A D G+
Sbjct: 682 KLLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGK 741
Query: 105 VLRYVGVVDAINKEG--RVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAG 162
VLRYVG +D ++G RV++ + P ++ +N +AF + Y+ PL++RG GAG
Sbjct: 742 VLRYVGNID---EDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG 798
Query: 163 AQVTAGGIFSDILRLASY 180
VTA G+F+D+LR S+
Sbjct: 799 NDVTAAGVFADLLRTLSW 816
>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=thrA PE=3 SV=1
Length = 816
Score = 94.0 bits (232), Expect = 6e-19, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 80/135 (59%), Gaps = 1/135 (0%)
Query: 45 QVIILARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGE 104
+++ILARESG +EL D+ + +P K ++F+ +L + D + + ++A + G
Sbjct: 683 KLLILARESGYNIELKDIKIEPLLPNNFKIYEDTDKFLLKLKELDVYFSNKIKQALNVGN 742
Query: 105 VLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQ 164
VLR+V ++ ++ ++L ++P ++ +N +AF T Y+ PL++RG GAG
Sbjct: 743 VLRFVATIEQ-KRQFFIKLEEVNINNPLYKVKNGENALAFYTNYYQPIPLVLRGYGAGNN 801
Query: 165 VTAGGIFSDILRLAS 179
VTA G+FSD+LR S
Sbjct: 802 VTASGVFSDLLRTLS 816
>sp|P11420|DA_DROME Protein daughterless OS=Drosophila melanogaster GN=da PE=1 SV=1
Length = 710
Score = 35.0 bits (79), Expect = 0.30, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 34/65 (52%)
Query: 71 PLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDH 130
P + C+SA+E P K+R++A +A E +R + +A+ + GR+ + K D
Sbjct: 530 PRRYCSSADEDDDAEPAVKAIREKERRQANNARERIRIRDINEALKELGRMCMTHLKSDK 589
Query: 131 PFAQL 135
P +L
Sbjct: 590 PQTKL 594
>sp|P52986|DHOM_SYNY3 Homoserine dehydrogenase OS=Synechocystis sp. (strain PCC 6803 /
Kazusa) GN=hom PE=3 SV=1
Length = 433
Score = 32.7 bits (73), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 120 RVELRRYKRDHPFAQLSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLAS 179
RV +DHP A ++G N + T + ++ G GAGA TA + SD++ +
Sbjct: 263 RVHPTLIAKDHPLASVNGVYNGVLVTGDPLGQ--VMFYGRGAGAGPTASAVVSDVINIVG 320
Query: 180 YL 181
+
Sbjct: 321 II 322
>sp|Q9CBT0|PANB_MYCLE 3-methyl-2-oxobutanoate hydroxymethyltransferase OS=Mycobacterium
leprae (strain TN) GN=panB PE=3 SV=1
Length = 286
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 49 LARESGLKLELSDLPVRSFVPEPLKACASAEEFMKQ 84
+ R +G L ++DLP S+ P P A A A FMK+
Sbjct: 94 VVRGAGHALVVADLPFGSYEPGPTAALAVATRFMKE 129
>sp|P52985|DHOM_LACLC Homoserine dehydrogenase OS=Lactococcus lactis subsp. cremoris
GN=hom PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 10/102 (9%)
Query: 78 AEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKE--GRVELRRYKRDHPFAQL 135
A+ ++ + + D E+A+Q G VL+ G ++ ++ V + HP A +
Sbjct: 225 AKSGLRSIQKTDVEIAQQF------GYVLKLTGEINEVDSGIFAEVSPTFLPKSHPLASV 278
Query: 136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRL 177
+G N + ++ + + G GAG + TA + +DI+R+
Sbjct: 279 NGVMNAVFIESEGIGDS--VFYGAGAGQKPTATSVLADIVRI 318
>sp|C5C9T2|RBFA_MICLC Ribosome-binding factor A OS=Micrococcus luteus (strain ATCC 4698 /
DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 / NCTC
2665 / VKM Ac-2230) GN=rbfA PE=3 SV=1
Length = 148
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 48 ILARESGLKLELSDLPVRSFVPEPL-KACASAEEFMKQLPQFDKELAKQRQEAEDAGEVL 106
IL RE G L + +P FV + + +A A E+ ++ + D ELAK R+ A AG+
Sbjct: 74 ILRREVGRGLTIRLVPTLEFVADTVPEAAAHLEDVLRAAKERDAELAKAREGASYAGDAD 133
Query: 107 RY 108
Y
Sbjct: 134 PY 135
>sp|Q6G091|DAPA_BARQU 4-hydroxy-tetrahydrodipicolinate synthase OS=Bartonella quintana
(strain Toulouse) GN=dapA PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 109 VGVVDAINKEGRVELRRYKRDHPFAQLSGSDNI 141
+GV DA +K GRV +R K F QLSG D I
Sbjct: 159 IGVKDATSKIGRVSEQREKCGKDFIQLSGDDCI 191
>sp|P57750|AGM1_ARATH Phosphoacetylglucosamine mutase OS=Arabidopsis thaliana GN=DRT101
PE=1 SV=1
Length = 556
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 104 EVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGSDNII 142
E LR +G+ DAIN E+++Y R F + SG+++++
Sbjct: 492 EALRPMGIQDAINS----EIKKYSRGRAFIRPSGTEDVV 526
>sp|Q9T009|LACS5_ARATH Long chain acyl-CoA synthetase 5 OS=Arabidopsis thaliana GN=LACS5
PE=2 SV=1
Length = 666
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 68 VPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLR 107
+PE K C ++ ++MK + F +Q++EAE G V+
Sbjct: 162 IPELFKTCPNSTKYMKTVVSFGGVKPEQKEEAEKLGLVIH 201
>sp|P58802|TB10A_MOUSE TBC1 domain family member 10A OS=Mus musculus GN=Tbc1d10a PE=1 SV=1
Length = 500
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 11/126 (8%)
Query: 4 HFELSEKLTTVDASIFVCGLFLCLNAEC--NSMRIRLKKTFFLQVIILARESGLKLELSD 61
H LS + +D +++ F+C A S +R+ FF + + + GL L
Sbjct: 257 HKHLSRQ--KIDPLLYMTEWFMCAFARTLPWSSVLRVWDMFFCEGVKIIFRVGLVLLKHA 314
Query: 62 LPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRV 121
L PE LKAC E ++QL ++ QEA EV+ I +E +
Sbjct: 315 L----GSPEKLKACQGQYETIEQLRSLSPKIM---QEAFLVQEVIELPVTERQIEREHLI 367
Query: 122 ELRRYK 127
+LRR++
Sbjct: 368 QLRRWQ 373
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,759,428
Number of Sequences: 539616
Number of extensions: 2592212
Number of successful extensions: 7161
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7118
Number of HSP's gapped (non-prelim): 53
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)