Query 029942
Match_columns 185
No_of_seqs 121 out of 1101
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 06:04:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029942.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029942hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02700 homoserine dehydrogen 100.0 6.9E-44 1.5E-48 319.2 19.2 172 6-180 175-375 (377)
2 PRK09466 metL bifunctional asp 100.0 6.9E-43 1.5E-47 337.4 19.8 173 6-181 611-810 (810)
3 PF00742 Homoserine_dh: Homose 100.0 2.5E-42 5.5E-47 281.9 13.8 147 5-175 3-179 (179)
4 COG0460 ThrA Homoserine dehydr 100.0 2.6E-41 5.7E-46 297.8 17.4 155 5-183 148-332 (333)
5 PRK09436 thrA bifunctional asp 100.0 1.5E-40 3.2E-45 321.7 19.3 175 6-183 617-818 (819)
6 PRK06349 homoserine dehydrogen 100.0 1.2E-39 2.5E-44 295.6 18.5 154 5-182 139-322 (426)
7 PRK08374 homoserine dehydrogen 100.0 3.1E-39 6.6E-44 285.3 17.6 153 5-184 157-335 (336)
8 KOG0455 Homoserine dehydrogena 100.0 3.3E-39 7.2E-44 275.6 15.4 174 7-181 159-363 (364)
9 PRK06270 homoserine dehydrogen 100.0 9.1E-39 2E-43 282.4 17.3 153 5-183 160-340 (341)
10 PRK06813 homoserine dehydrogen 100.0 8E-38 1.7E-42 277.7 16.9 151 6-181 158-340 (346)
11 PRK06392 homoserine dehydrogen 100.0 2.4E-36 5.2E-41 266.4 15.0 145 5-180 151-324 (326)
12 COG1862 YajC Preprotein transl 45.8 8.5 0.00018 28.7 0.5 26 1-26 34-59 (97)
13 PRK06531 yajC preprotein trans 42.1 13 0.00029 28.4 1.1 25 2-26 28-52 (113)
14 PF03123 CAT_RBD: CAT RNA bind 37.6 32 0.00069 23.2 2.3 22 139-162 9-30 (59)
15 PF04431 Pec_lyase_N: Pectate 34.2 38 0.00083 22.8 2.2 19 84-102 1-19 (56)
16 PRK05886 yajC preprotein trans 34.2 21 0.00046 27.2 1.1 24 3-26 31-54 (109)
17 PRK05585 yajC preprotein trans 33.5 22 0.00048 26.7 1.1 24 3-26 45-68 (106)
18 PF02699 YajC: Preprotein tran 29.2 20 0.00044 25.5 0.2 24 3-26 29-52 (82)
19 TIGR00739 yajC preprotein tran 27.9 32 0.00069 24.7 1.1 24 3-26 30-53 (84)
20 PF15649 Tox-REase-7: Restrict 25.9 1E+02 0.0022 22.5 3.4 25 87-111 54-78 (87)
21 PF11259 DUF3060: Protein of u 20.1 98 0.0021 20.9 2.2 12 135-146 20-31 (61)
No 1
>PLN02700 homoserine dehydrogenase family protein
Probab=100.00 E-value=6.9e-44 Score=319.18 Aligned_cols=172 Identities=30% Similarity=0.504 Sum_probs=158.2
Q ss_pred hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942 6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE 58 (185)
Q Consensus 6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~ 58 (185)
+..+.+. +||+|.+|+||||+ +| +|. ||+.||+ +|+|||++||||++|++++
T Consensus 175 ~tl~~ll~sGd~I~~I~GIlnGT~nyIl~~m~~g~~fseal~eAq~~GyaEp-DP~~Dl~G~D~ArKl~ILAr~~G~~~~ 253 (377)
T PLN02700 175 ASLNRILSSGDPVHRIVGSLSGTLGYVMSELEDGKPFSEVVKQAKSLGYTEP-DPRDDLGGMDVARKALILARLLGKRIN 253 (377)
T ss_pred HHHHHHhhccCCEEEEEEEEeChHHHHHHHHhcCCCHHHHHHHHHHcCCCCC-CCccccccHhHHHHHHHHHHHhCCCCC
Confidence 4455655 69999999999995 44 776 9999999 9999999999999999999
Q ss_pred CCCeeeecCCCcCCcCC-CChHHHHh-cCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccC
Q 029942 59 LSDLPVRSFVPEPLKAC-ASAEEFMK-QLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLS 136 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i-~~~~~fl~-~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~ 136 (185)
++||+++||+|+.+... .+.++|++ +|+++|+.|+++++.|+++|+++||||+++ +++++|+|+.+|++|||++|+
T Consensus 254 ~~dv~v~~l~p~~~~~~~~s~~~f~~~gi~~~d~~~~~~~~~A~~~g~~lR~Va~~~--~~~~~V~~~~vp~~hpla~v~ 331 (377)
T PLN02700 254 MDSIKVESLYPEEMGPDLMSTDDFLHSGLVELDLPIEERVKEASLKGCVLRYVCVIE--GSSCQVGIRELPKDSALGRLR 331 (377)
T ss_pred hhhEEEEecccccccccccchhhHhhcCCccCChHHHHHHHHHHHCCCEEEEEEEEE--CCeEEEEEEEECCCCccccCC
Confidence 99999999999988632 24899999 899999999999999999999999999997 468999999999999999999
Q ss_pred CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942 137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 180 (185)
Q Consensus 137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~ 180 (185)
|++|+|.|+|++|+++|++++|+|||+.+||+|||+||+++++.
T Consensus 332 g~~N~v~~~t~~~~~~plvv~G~GAG~~~TA~~vl~Dll~i~~~ 375 (377)
T PLN02700 332 GSDNVVEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDLQDL 375 (377)
T ss_pred CCceEEEEEecccCCcceEEEcCCCChhHhHHHHHHHHHHHHHh
Confidence 99999999999998889999999999999999999999999973
No 2
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=6.9e-43 Score=337.35 Aligned_cols=173 Identities=36% Similarity=0.629 Sum_probs=162.0
Q ss_pred hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942 6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE 58 (185)
Q Consensus 6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~ 58 (185)
..++.++ .||+|.+|+||+|+ +| ||. |||.||+ +|+|+|++||||++|.+++
T Consensus 611 ~~l~~l~~~gd~i~~i~GIlnGT~nyi~~~~~~g~~f~eal~~Aq~~GyaE~-DP~~Dl~G~D~a~Kl~ILa~~~g~~~~ 689 (810)
T PRK09466 611 HTVRDLRNSGDSILAISGIFSGTLSWLFLQFDGSVPFSELVDQAWQQGLTEP-DPRDDLSGRDVMRKLVILAREAGYEIE 689 (810)
T ss_pred HHHHHHHhccCcEEEEEEEEccHHHHHHHHHhcCCCHHHHHHHHHHcCCCCC-CCccccccHHHHHHHHHHHHHhCCCCC
Confidence 3455555 69999999999994 44 777 9999999 9999999999999999999
Q ss_pred CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942 59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS 138 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~ 138 (185)
++||++++|+|+||++++ .+||+++|+.+|+.|+++++.|+++|+++||||++++ +++++|+|+++|++|||++|+|+
T Consensus 690 ~~dv~~~~l~p~~i~~i~-~~df~~~l~~~d~~~~~~i~~A~~~g~~lrlva~~~~-~~~~~V~p~~v~~~~pla~v~g~ 767 (810)
T PRK09466 690 PDDVRVESLVPAHLEDGS-LDQFFENGDELDEQMLQRLEAAAEQGKVLRYVARFDA-NGKARVGVEAVRPDHPLANLLPC 767 (810)
T ss_pred hheEEEeecCCcccccCC-HHHHhhhhhhhhhhHHHHHHHHHHCCCEEEEEEEEEe-CCEEEEEEEEECCCCcccccCCC
Confidence 999999999999999987 8999999999999999999999999999999999987 55999999999999999999999
Q ss_pred CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~ 181 (185)
+|++.|+|++++++|++++|+|||+.+||+||++||+++++.|
T Consensus 768 ~N~v~~~t~~~~~~~l~~~G~GAG~~~TA~aVlsDll~i~~~~ 810 (810)
T PRK09466 768 DNVFAIESRWYRDNPLVIRGPGAGREVTAGAIQSDLNRLAQLL 810 (810)
T ss_pred ceEEEEEeccccCCceEEEcCCCChHHhHHHHHHHHHHHHhhC
Confidence 9999999999965589999999999999999999999999864
No 3
>PF00742 Homoserine_dh: Homoserine dehydrogenase; InterPro: IPR001342 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the catalytic domain of homoserine dehydrogenase.; GO: 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2EJW_E 3ING_A 3JSA_A 3C8M_A 1TVE_A 1EBU_D 1EBF_B 1Q7G_A 3DO5_A 3MTJ_A.
Probab=100.00 E-value=2.5e-42 Score=281.91 Aligned_cols=147 Identities=31% Similarity=0.455 Sum_probs=133.2
Q ss_pred hhhhhhhhcccceeeeecccc-cCc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFL-CLN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK 56 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~-~~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~ 56 (185)
+.+.+...++|+|.+|+||+| |+| ||. ||+.||+ +|+|+|++||||+ +|.+
T Consensus 3 i~~l~~~~~~~~I~~i~GIlNGT~NyIL~~m~~~g~~f~~al~eAq~lGyaE~-DP~~Dv~G~Daa~Kl~ILa~~~~g~~ 81 (179)
T PF00742_consen 3 INTLRNLLAGDKIKRIEGILNGTTNYILTRMEEEGLSFSEALKEAQELGYAEA-DPSDDVDGWDAARKLVILARLAFGVD 81 (179)
T ss_dssp HHHHHHCCTTSCEEEEEEE--HHHHHHHHHHHTHT--HHHHHHHHHHTTSS-S-STHHHHTTHHHHHHHHHHHHHHHTTT
T ss_pred hhHHhhhcccCceEEEEEEEcCHHHHHHHHHhcCCCCHHHHHHHHHHcCCCCC-CcccCCCCHhHHHHHHHHhHHHHCCC
Confidence 567888899999999999999 454 888 9999999 9999999999999 7999
Q ss_pred CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942 57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ 134 (185)
Q Consensus 57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~ 134 (185)
++++||++ +||++++ .+|+++|+++|+++||||++++.++ +++|+|+++|++|||++
T Consensus 82 ~~~~dv~~-----~gI~~i~----------------~~~i~~a~~~g~~~klva~~~~~~~~~~~~V~p~~v~~~~pla~ 140 (179)
T PF00742_consen 82 LDPEDVPV-----EGIRDIT----------------PEDIAYAKKEGKVLKLVASADRENGGIQASVKPELVPKDHPLAS 140 (179)
T ss_dssp -SGGGSEE-------STTGG----------------HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSGGGG
T ss_pred CCccceee-----cCCCCcC----------------HHHHHHHHHCCCEEEEEEEEEEeCCcEEEEEEEEEcCCCCcccc
Confidence 99999999 8999998 5799999999999999999998655 79999999999999999
Q ss_pred cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHH
Q 029942 135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDIL 175 (185)
Q Consensus 135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll 175 (185)
++|++|++.|+|+++| +++++|+|||+.+||+||++||+
T Consensus 141 v~g~~N~v~i~t~~~g--~~~~~G~GAG~~~TA~avl~Dll 179 (179)
T PF00742_consen 141 VKGSENAVEIETDYYG--PLVLYGPGAGPLPTASAVLSDLL 179 (179)
T ss_dssp SSTTEEEEEEEESSSE--EEEEEECSSSHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEccccc--cEEEEcCCCChHHHHHHHHHhhC
Confidence 9999999999999998 99999999999999999999996
No 4
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.6e-41 Score=297.84 Aligned_cols=155 Identities=33% Similarity=0.480 Sum_probs=144.1
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK 56 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~ 56 (185)
+++.+.+..+|+|.+|.||+|+ +| ||. |||+||+ +|+|||++||||+ +|.+
T Consensus 148 I~~lr~~l~g~~I~~i~GIlNGT~NyIlt~m~~~~~~f~dal~eAq~lGyAE~-DPt~DleG~DaA~Kl~ILa~~~~g~~ 226 (333)
T COG0460 148 IKLLRELLAGDEILSIRGILNGTTNYILTRMEEGGLSFEDALAEAQELGYAEA-DPTDDLEGIDAARKLVILARLAFGTP 226 (333)
T ss_pred HHHHHhhcccCceEEEEEEEeccHHHHHHHHHccCCCHHHHHHHHHHcCCCCC-CCCCCccchHHHHHHHHHHHHHcCCC
Confidence 4677888899999999999994 44 888 9999999 9999999999998 6999
Q ss_pred CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942 57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ 134 (185)
Q Consensus 57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~ 134 (185)
++++||++ +||+.++ .+|++.|+++|+++||||.+++.++ +++|+|++||.+|||++
T Consensus 227 ~~~~DV~v-----eGI~~i~----------------~~d~~~A~~~G~~iklvg~~~~~~~~~~~~V~p~~vp~~~pLa~ 285 (333)
T COG0460 227 ETLDDVEV-----EGITPIT----------------PEDIEFAKELGYVIKLVGIADKTGKGIEARVHPTLVPKDHPLAS 285 (333)
T ss_pred CChhheEE-----ecCcCCC----------------HHHHHHHHhCCcEEEEEEEEEecCCceEEEEEeEEeCCCCccee
Confidence 99999999 7899998 4799999999999999999998655 69999999999999999
Q ss_pred cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942 135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 183 (185)
Q Consensus 135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~ 183 (185)
|+|.+|++.|+|+.+| |++++|+|||+.+||+||++|++++++....
T Consensus 286 V~g~~Nav~i~td~~g--~l~~~G~GAG~~~TAsaV~sDli~i~~~~~~ 332 (333)
T COG0460 286 VNGVMNAVAIETDAYG--PLVLYGPGAGGEVTASAVLSDLLRIARLKVG 332 (333)
T ss_pred cCCcceEEEEEeeccc--eEEEEeCCCCcchhHHHHHHHHHHHHHhccC
Confidence 9999999999999999 9999999999999999999999999987654
No 5
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=100.00 E-value=1.5e-40 Score=321.73 Aligned_cols=175 Identities=38% Similarity=0.621 Sum_probs=163.4
Q ss_pred hhhhhhh-cccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942 6 ELSEKLT-TVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE 58 (185)
Q Consensus 6 ~~~~~~~-~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~ 58 (185)
...+.+. +||.|.+|+||+|+ +| ||. |||.||+ +|+|+|++||||++|++++
T Consensus 617 ~~l~~~~~~g~~i~~i~GilnGT~nyIl~~~~~g~~f~~al~~Aq~~GyaE~-DP~~Dl~G~D~a~Kl~ILa~~~g~~~~ 695 (819)
T PRK09436 617 ETLQNLLNAGDELLKFEGILSGSLSFIFGKLDEGMSFSEATRLAKEKGYTEP-DPRDDLSGMDVARKLLILAREAGYELE 695 (819)
T ss_pred HHHHHHHhccCcEEEEEEEEeChHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCcccccchHHHHHHHHHHHHhCCCCC
Confidence 4566666 89999999999995 44 777 9999999 9999999999999999999
Q ss_pred CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942 59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS 138 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~ 138 (185)
++||++++++|+++....++++|++++..+|+.|.++++.|+++|+++||||+++ +++++|+|+++|++||||+|+|+
T Consensus 696 ~~dv~~~gi~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~a~~~g~~lr~va~~~--~~~~~v~~~~v~~~~~la~v~g~ 773 (819)
T PRK09436 696 LEDIEVESVLPEEFDASGSVDEFMARLPELDAEFAARVAKARAEGKVLRYVGQIE--DGKCRVGIAEVDANHPLYKVKGG 773 (819)
T ss_pred hhheeecccCchhhcccccHHHHHhhchhhhhHHHHHHHHHHHCCCEEEEEEEEe--CCeEEEEEEEECCCCccccCCCC
Confidence 9999999999998877656899999999999999999999999999999999994 56899999999999999999999
Q ss_pred CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 183 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~ 183 (185)
+|+|.|+|+++|++|++++|+|||+.+||+|||+||+++++++++
T Consensus 774 ~n~v~~~t~~~~~~~~~~~G~gAG~~~TA~av~~Dll~i~~~~~~ 818 (819)
T PRK09436 774 ENALAFYTRYYQPIPLVLRGYGAGNEVTAAGVFADLLRTLSWKLG 818 (819)
T ss_pred ceEEEEEecccCceeeEEEcCCCChHHhHHHHHHHHHHHHHhhcC
Confidence 999999999999778999999999999999999999999998876
No 6
>PRK06349 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=1.2e-39 Score=295.57 Aligned_cols=154 Identities=22% Similarity=0.302 Sum_probs=142.7
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK 56 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~ 56 (185)
+...++..++|.|.+|+||+|+ +| ||. |||+||+ +|+|+|++||||+ +|.+
T Consensus 139 i~~l~~~l~~~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~ 217 (426)
T PRK06349 139 IKALREGLAANRITRVMGIVNGTTNYILTKMTEEGLSFEDALKEAQRLGYAEA-DPTFDVEGIDAAHKLAILASLAFGTR 217 (426)
T ss_pred HHHHHhhcccCCeeEEEEEEeCcHHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 4566777899999999999994 54 777 9999999 9999999999998 5999
Q ss_pred CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942 57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ 134 (185)
Q Consensus 57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~ 134 (185)
++++||++ +||++++ .+|+++|+++|+++||||++++.++ +++|+|+++|++|||++
T Consensus 218 ~~~~~i~~-----~gi~~i~----------------~~di~~a~~~g~~iklv~~~~~~~~~~~~~V~p~~v~~~~pla~ 276 (426)
T PRK06349 218 VDFDDVYV-----EGISKIT----------------AEDIAYAKELGYRIKLLGIAERTEEGIELRVHPTLIPKSHPLAN 276 (426)
T ss_pred CChhheee-----eCcccCC----------------HHHHHHHHHCCCeEEEEEEEEEcCCcEEEEEEEEEECCCCccee
Confidence 99999999 8999998 5889999999999999999987543 69999999999999999
Q ss_pred cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcC
Q 029942 135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLG 182 (185)
Q Consensus 135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~ 182 (185)
|+|++|+|.|+|+.+| +++++|+|||+.+||+||++||+++++...
T Consensus 277 v~g~~N~v~~~~~~~g--~~~~~G~GAG~~~Ta~av~~Di~~~~~~~~ 322 (426)
T PRK06349 277 VNGVMNAVFVEGDAVG--ETMFYGPGAGGLPTASAVVADLVDIARNLV 322 (426)
T ss_pred CCCCceEEEEEecccc--cEEEEeCCCChHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999 999999999999999999999999998754
No 7
>PRK08374 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-39 Score=285.30 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=141.6
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARESGLKLE 58 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i~ 58 (185)
+...+...++|+|.+|+||+|+ +| ||. |||.||+ +|+|+|++||||+++.+++
T Consensus 157 i~~l~~~l~g~~i~~i~GIlnGT~nyIl~~m~~g~~f~eal~eAq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~~~~~ 235 (336)
T PRK08374 157 IGLLRENLLGDTVKRIEAVVNATTTFILTRMEQGKTFEEALKEAQTLGIAER-DPSKDIDGIDAGYKATILHWVAFPPIT 235 (336)
T ss_pred hHHHHhhccccceEEEEEEEechHHHHHHHhhCCCCHHHHHHHHHHcCCCCC-CCcccccCHHHHHHHHHHHHHhCCCCC
Confidence 4567788899999999999994 54 777 9999999 9999999999999779999
Q ss_pred CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCCC
Q 029942 59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSGS 138 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g~ 138 (185)
++||++ +||++++ .+|++.|+++|+++||||+++. ++++|+|+++|++|||+ ++|.
T Consensus 236 ~~dv~~-----~gi~~i~----------------~~~i~~a~~~g~~lklv~~~~~--~~~~V~p~~v~~~~pl~-v~g~ 291 (336)
T PRK08374 236 FEEVGI-----RGIKDVT----------------EGEIERAKAKGRNVRLVATVEE--GRISVKPKKLPENSPLA-VEGV 291 (336)
T ss_pred hhheee-----eccccCC----------------HHHHHHHHHCCCEEEEEEEEEC--CeEEEEEEEECCCCCee-eCCC
Confidence 999999 7999987 5899999999999999999864 58999999999999999 9999
Q ss_pred CeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCCC
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGAP 184 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~~ 184 (185)
+|++.|+|+.+| +++++|+|||+.+||+|||+||+++++.+-++
T Consensus 292 ~n~v~~~t~~~g--~~~~~G~GAG~~~TA~avl~Dll~~~~~~~~~ 335 (336)
T PRK08374 292 ENAAVIKTDLLG--ELVLKGPGAGGKETASGVVTDIIKAALKFPKY 335 (336)
T ss_pred ceEEEEEccccC--cEEEEeCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999 89999999999999999999999999977554
No 8
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-39 Score=275.55 Aligned_cols=174 Identities=42% Similarity=0.711 Sum_probs=164.8
Q ss_pred hhhhhhcccceeeeecccccC-----------------------------ccccCCCcCCHh-HHHHHHHHHHHHhcCCC
Q 029942 7 LSEKLTTVDASIFVCGLFLCL-----------------------------NAECNSMRIRLK-KTFFLQVIILARESGLK 56 (185)
Q Consensus 7 ~~~~~~~~d~i~~~~gi~~~~-----------------------------n~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~ 56 (185)
|-|-+.+||++.+|+|||++| |+|- ||+.|+. .|+|||..||+|.+|+.
T Consensus 159 L~eiI~tGDev~kIeGifSGTLsYifne~s~gk~~~~sfsdvVk~AKklGYTEP-DPRDDLnGmDVARKvtIl~Ri~Gv~ 237 (364)
T KOG0455|consen 159 LNEIISTGDEVHKIEGIFSGTLSYIFNELSDGKPGTLSFSDVVKAAKKLGYTEP-DPRDDLNGMDVARKVTILARILGVR 237 (364)
T ss_pred HHHHHhcCCceeEEEEEeeccHHHHHHHhhcCCCCcccHHHHHHHHHHcCCCCC-Ccccccccchhhhhhhhhhhhccce
Confidence 556788999999999999964 2555 9999999 99999999999999999
Q ss_pred CC-CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCcccc
Q 029942 57 LE-LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQL 135 (185)
Q Consensus 57 i~-~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v 135 (185)
++ ++.++++||+|+.+.++.+.+||+++|.++|..|.++.++|..+|+++|+||.++..+....|+.+.+..+|||+++
T Consensus 238 ves~~Sfpv~SLiPepl~s~~sadeFL~gl~~~D~~~~~~~keA~~egkVlRfvg~~dva~ksv~Vgiekyd~shPfa~L 317 (364)
T KOG0455|consen 238 VESMDSFPVESLIPEPLPSLMSADEFLHGLVKLDQNIEERVKEASSEGKVLRFVGVIDVANKSVQVGIEKYDKSHPFARL 317 (364)
T ss_pred eecccccchhhcCCccccccccHHHHHhhhhhhhhhHHHHHHHhhccCcEEEEEEEEecccceEEeeeEeccccCchhhh
Confidence 98 99999999999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942 136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~ 181 (185)
+|++|.+.|+|++|.++|++++|.|||...||++||+|+++|+..+
T Consensus 318 ~gSDNiisi~tkrY~t~PlViqGAGAGaavTAAGVLgDiIki~~~~ 363 (364)
T KOG0455|consen 318 RGSDNIISIYTKRYKTQPLVIQGAGAGAAVTAAGVLGDIIKIQDLF 363 (364)
T ss_pred cCCCceEEEEeeecccCceEEEccCCcchhhhhHHHHHHHHHHHhh
Confidence 9999999999999988999999999999999999999999998764
No 9
>PRK06270 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=9.1e-39 Score=282.38 Aligned_cols=153 Identities=27% Similarity=0.345 Sum_probs=141.4
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHhc-CCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARES-GLK 56 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~-G~~ 56 (185)
+...+++..+|+|.+|+||+|+ +| ||. |||.||+ +|+|+|++||||++ |.+
T Consensus 160 i~~l~~~l~g~~I~~I~GIlnGT~nyIl~~m~~~g~~f~~al~~Aq~~G~aE~-DP~~D~~G~D~a~Kl~Ila~~~~g~~ 238 (341)
T PRK06270 160 INLAKETLAGNDIKSIKGILNGTTNYILTRMEEEGLSYEQALAEAQELGYAEA-DPTYDVEGIDAALKVVILANSILGAD 238 (341)
T ss_pred HHHHHhhcccCceEEEEEEEeCcHHHHHHHHhhcCCCHHHHHHHHHHcCCCCC-CCCCCCccHHHHHHHHHHHHHHcCCC
Confidence 4567777889999999999994 44 777 9999999 99999999999995 999
Q ss_pred CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccC
Q 029942 57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLS 136 (185)
Q Consensus 57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~ 136 (185)
++++||++ +||++++ ++|++.|+++|+++||||+++..++ ++|+|+++|++|||+ |+
T Consensus 239 ~~~~~v~~-----~gi~~~~----------------~~~~~~a~~~g~~~r~v~~~~~~~~-~~V~~~~~~~~~~l~-~~ 295 (341)
T PRK06270 239 LTIKDVEV-----EGITKIT----------------PEAIELAAKEGYRIKLIGEVSREKD-LSVSPRLVPLDHPLA-VS 295 (341)
T ss_pred CCHHHeee-----cCcccCC----------------HHHHHHHHHCCCEEEEEEEEEcCCC-eEEEEEEECCCCCcE-EC
Confidence 99999999 7888888 5899999999999999999987444 999999999999999 99
Q ss_pred CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhcCC
Q 029942 137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYLGA 183 (185)
Q Consensus 137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~~~ 183 (185)
|++|++.|+|+++| |++++|+|||+.+||+||++||+++++..++
T Consensus 296 g~~n~~~~~~~~~~--~~~~~G~gaG~~~Ta~av~~Dl~~i~~~~~~ 340 (341)
T PRK06270 296 GTLNAATFETDLAG--DVTVVGRGAGSIETASAILSDLIAIHDRYGK 340 (341)
T ss_pred CCceEEEEEecccC--CEEEEeCCCChHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999 9999999999999999999999999998764
No 10
>PRK06813 homoserine dehydrogenase; Validated
Probab=100.00 E-value=8e-38 Score=277.69 Aligned_cols=151 Identities=18% Similarity=0.264 Sum_probs=137.3
Q ss_pred hhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHH-hcCCCC
Q 029942 6 ELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILAR-ESGLKL 57 (185)
Q Consensus 6 ~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr-~~G~~i 57 (185)
...+...++|+|.+|+||+|+ +| ||. |||+||+ +|+|+|++|||+ ++|+++
T Consensus 158 ~~l~~~~~g~~I~~i~GIlNGT~NyIL~~m~~~g~~f~eal~~Aq~lGyaE~-DP~~Dl~G~D~A~Kl~ILA~~~~G~~i 236 (346)
T PRK06813 158 DIGQFSLAGCHIEKIEGILNGTTNYILTKMNEEDITFEEALKEAQSKGIAET-NPILDVSGSDSACKLLLLTNSLMGTEN 236 (346)
T ss_pred HHHhhhcccCcEEEEEEEEechHHHHHhhhhhcCCCHHHHHHHHHHcCCCCC-CCccccccHHHHHHHHHHHHHHcCCCC
Confidence 345778999999999999994 44 777 9999999 999999999995 589999
Q ss_pred CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeC-C--eEEEEEEEecCCCCccc
Q 029942 58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAIN-K--EGRVELRRYKRDHPFAQ 134 (185)
Q Consensus 58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~-~--~~~V~p~~vp~~~pLa~ 134 (185)
+++||++ +||++++ .++++.|+++|+++||||++.+.+ + .++|+|+++|++|||++
T Consensus 237 ~~~dv~~-----eGI~~i~----------------~~~i~~A~~~g~~iklva~~~~~~~~~~~~~V~p~~vp~~~pla~ 295 (346)
T PRK06813 237 KLTDIHI-----KGIEHVT----------------KQQIRNAKEQNKIIKLIASAYKDNEGNVNLNVEPYKIEKNHPLAN 295 (346)
T ss_pred ChHheEe-----eccccCC----------------HHHHHHHHHCCCEEEEEEEEEEcCCCeEEEEEEEEEECCCCcccc
Confidence 9999999 7999988 589999999999999999998754 4 46999999999999999
Q ss_pred cCCCCeEEEEEcCccCCcceEEEcCCCC-hHHHHHHHHHHHHHHHHhc
Q 029942 135 LSGSDNIIAFTTKRYKEQPLIVRGPGAG-AQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 135 v~g~~Nav~i~td~~g~~~l~v~G~GAG-~~~TA~aVlsDll~i~~~~ 181 (185)
|+|++|++.|+|+++| +++++| ||| +.+||+|||+||+++++..
T Consensus 296 v~g~~N~v~~~td~~g--~~~~~G-gag~~~~TAsavl~Dii~i~~~~ 340 (346)
T PRK06813 296 VNGTEKGITFFTDTMG--QVTTIG-GASNPRGAAAAALKDIINLYRKD 340 (346)
T ss_pred CCCCceEEEEEeeecC--cEEEEc-CCCCCcccHHHHHHHHHHHHhhh
Confidence 9999999999999999 999999 666 7999999999999998753
No 11
>PRK06392 homoserine dehydrogenase; Provisional
Probab=100.00 E-value=2.4e-36 Score=266.38 Aligned_cols=145 Identities=21% Similarity=0.212 Sum_probs=132.4
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKL 57 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i 57 (185)
+.+.+...++|+|.+|+||+|+ +| ||. |||.||+ +|+|+|++||||+ +|+++
T Consensus 151 i~~~~~~~~g~~i~~i~GilnGT~nyIl~~m~~g~~f~~al~eAq~lG~aE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~~ 229 (326)
T PRK06392 151 FSLRDYSTLPSRIKNFRGIVSSTINYVIRQEANGRGFLDVVKIAQKMGIAET-NYSDDLMGLDAARKSVILANHLFGKDY 229 (326)
T ss_pred hhhhhhhcccCCEEEEEEEEeChHHHHHhhccCCCCHHHHHHHHHHcCCCCC-CCccccCCHHHHHHHHHHHHHHcCCCC
Confidence 4566778999999999999994 44 777 9999999 9999999999998 59999
Q ss_pred CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCcccc
Q 029942 58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQL 135 (185)
Q Consensus 58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v 135 (185)
+++||++ +||++++ . +.|+++|||+++.+.++ +++|+|+.+|++|||+++
T Consensus 230 ~~~dv~~-----~gi~~i~-~----------------------~~~~~~kli~~~~~~~~~~~~~V~p~~~~~~~pla~v 281 (326)
T PRK06392 230 TLRDVTY-----DGIENID-R----------------------SSMDNERLVTEVAMINGGPHAESRIRSLSRNDFLGMI 281 (326)
T ss_pred CHHHeee-----cCccccC-H----------------------hhCCceEEEEEEEEeCCcEEEEEEEEEcCCCCcchhc
Confidence 9999999 8999998 1 35789999999988654 699999999999999999
Q ss_pred CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942 136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 180 (185)
Q Consensus 136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~ 180 (185)
.|.+|++.|+||.+| +++++|+|||+.+||+|||+||++++..
T Consensus 282 ~g~~n~~~~~td~~g--~~~~~G~gaG~~~Ta~a~l~Dl~~~~~~ 324 (326)
T PRK06392 282 GPLSLGYQMETDING--TINVSDNYDGPYETAGAVVNDVMLLSKY 324 (326)
T ss_pred CCCceEEEEEecccC--cEEEEeCCCCcHHHHHHHHHHHHHHHhc
Confidence 999999999999999 9999999999999999999999998763
No 12
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=45.79 E-value=8.5 Score=28.73 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.3
Q ss_pred Ccchhhhhhhhhcccceeeeeccccc
Q 029942 1 MTKHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 1 ~~~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
|.+|-++...++.||++.-+.||+-.
T Consensus 34 ~K~~~~ml~sL~kGD~VvT~gGi~G~ 59 (97)
T COG1862 34 MKEHQELLNSLKKGDEVVTIGGIVGT 59 (97)
T ss_pred HHHHHHHHHhccCCCEEEEcCCeEEE
Confidence 35799999999999999999999873
No 13
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=42.11 E-value=13 Score=28.40 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=22.5
Q ss_pred cchhhhhhhhhcccceeeeeccccc
Q 029942 2 TKHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 2 ~~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
.+|-++.+.++.||+|.-+.||+-.
T Consensus 28 Ke~~em~~sLk~GD~VvT~GGi~G~ 52 (113)
T PRK06531 28 QERQNQLNAIQKGDEVVTIGGLYGT 52 (113)
T ss_pred HHHHHHHHhcCCCCEEEECCCcEEE
Confidence 3688999999999999999999873
No 14
>PF03123 CAT_RBD: CAT RNA binding domain; InterPro: IPR004341 The CAT RNA-binding domain is found at the amino terminus of a family of transcriptional antiterminator proteins, the Co-AntiTerminator (CAT) domain. This domain forms a dimer in the crystal structure []. Transcriptional antiterminators of the BglG/SacY family are regulatory proteins that mediate the induction of sugar metabolizing operons in Gram-positive and Gram-negative bacteria. Upon activation, these proteins bind to specific targets in nascent mRNAs, thereby preventing abortive dissociation of the RNA polymerase from the DNA template [].; GO: 0003723 RNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1AUU_B 1TLV_A 1L1C_A 1H99_A 3RIO_A.
Probab=37.57 E-value=32 Score=23.22 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=15.0
Q ss_pred CeEEEEEcCccCCcceEEEcCCCC
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAG 162 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG 162 (185)
.|++....+.- +++++.|+|-|
T Consensus 9 NNvvl~~~~~~--~E~Iv~GkGIG 30 (59)
T PF03123_consen 9 NNVVLAKDDNG--QEVIVMGKGIG 30 (59)
T ss_dssp TTEEEEE-CCS--SEEEEE-TTSS
T ss_pred CeEEEEEeCCC--CEEEEEeecce
Confidence 57777774443 38999999987
No 15
>PF04431 Pec_lyase_N: Pectate lyase, N terminus; InterPro: IPR007524 This region is found N-terminal to the pectate lyase domain (IPR002022 from INTERPRO) in some plant pectate lyase enzymes.; GO: 0030570 pectate lyase activity
Probab=34.24 E-value=38 Score=22.81 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.5
Q ss_pred cCchhhHHHHHHHHHHHHc
Q 029942 84 QLPQFDKELAKQRQEAEDA 102 (185)
Q Consensus 84 ~l~~~d~~~~~di~~A~~~ 102 (185)
++.++|++|+++-+.|++.
T Consensus 1 nI~efDeyW~~Ra~eA~~~ 19 (56)
T PF04431_consen 1 NIGEFDEYWQKRAEEARKA 19 (56)
T ss_pred CcchHHHHHHHHHHHHHHH
Confidence 3568999999999888864
No 16
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=34.18 E-value=21 Score=27.16 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.7
Q ss_pred chhhhhhhhhcccceeeeeccccc
Q 029942 3 KHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 3 ~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
+|-++...++.||+|.-..||+-.
T Consensus 31 ~~~~m~~~Lk~GD~VvT~gGi~G~ 54 (109)
T PRK05886 31 ATIDLHESLQPGDRVHTTSGLQAT 54 (109)
T ss_pred HHHHHHHhcCCCCEEEECCCeEEE
Confidence 577899999999999999999873
No 17
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=33.52 E-value=22 Score=26.74 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=21.7
Q ss_pred chhhhhhhhhcccceeeeeccccc
Q 029942 3 KHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 3 ~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
+|-++.+.++.||+|.-++||+-+
T Consensus 45 ~~~~~~~~Lk~Gd~VvT~gGi~G~ 68 (106)
T PRK05585 45 EHKKMLSSLAKGDEVVTNGGIIGK 68 (106)
T ss_pred HHHHHHHhcCCCCEEEECCCeEEE
Confidence 577899999999999999999874
No 18
>PF02699 YajC: Preprotein translocase subunit; InterPro: IPR003849 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins []. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone (SecB), ATPase (SecA), an integral membrane complex (SecY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. Other cytoplasmic/periplasmic proteins play a part in preprotein translocase activity, namely YidC and YajC []. The latter is bound in a complex to SecD and SecF, and plays a part in stabilising and regulating secretion through the SecYEG integral membrane component via SecA []. Homologues of the YajC gene have been found in a range of pathogenic and commensal microbes. Brucella abortis YajC- and SecD-like proteins were shown to stimulate a Th1 cell-mediated immune response in mice, and conferred protection when challenged with B.abortis []. Therefore, these proteins may have an antigenic role as well as a secretory one in virulent bacteria []. A number of previously uncharacterised "hypothetical" proteins also show similarity to E.coli YajC, suggesting that this family is wider than first thought []. More recently, the precise interactions between the E.coli SecYEG complex, SecD, SecF, YajC and YidC have been studied []. Rather than acting individually, the four proteins form a heterotetrameric complex and associate with the SecYEG heterotrimeric complex []. The SecF and YajC subunits link the complex to the integral membrane translocase. ; PDB: 2RDD_B.
Probab=29.17 E-value=20 Score=25.51 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=5.6
Q ss_pred chhhhhhhhhcccceeeeeccccc
Q 029942 3 KHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 3 ~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
+|-++.+.++.||++.-.+||+-+
T Consensus 29 ~~~~m~~~Lk~Gd~VvT~gGi~G~ 52 (82)
T PF02699_consen 29 EHQEMLASLKPGDEVVTIGGIYGT 52 (82)
T ss_dssp HHTTGGG-----------------
T ss_pred HHHHHHHcCCCCCEEEECCcEEEE
Confidence 577889999999999999999984
No 19
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=27.86 E-value=32 Score=24.73 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=21.3
Q ss_pred chhhhhhhhhcccceeeeeccccc
Q 029942 3 KHFELSEKLTTVDASIFVCGLFLC 26 (185)
Q Consensus 3 ~~~~~~~~~~~~d~i~~~~gi~~~ 26 (185)
+|-++.+.++.||++.-..||+-.
T Consensus 30 ~~~~m~~~L~~Gd~VvT~gGi~G~ 53 (84)
T TIGR00739 30 AHKKLIESLKKGDKVLTIGGIIGT 53 (84)
T ss_pred HHHHHHHhCCCCCEEEECCCeEEE
Confidence 567899999999999999999873
No 20
>PF15649 Tox-REase-7: Restriction endonuclease fold toxin 7
Probab=25.90 E-value=1e+02 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHcCCcEEEEEE
Q 029942 87 QFDKELAKQRQEAEDAGEVLRYVGV 111 (185)
Q Consensus 87 ~~d~~~~~di~~A~~~G~~lKlva~ 111 (185)
.+..++...+++|++.|+++.|+..
T Consensus 54 s~t~Qlr~~~~~A~~~G~~~~Lvv~ 78 (87)
T PF15649_consen 54 SLTKQLRDYVKYAKENGYRFNLVVN 78 (87)
T ss_pred cchHHHHHHHHHHHHcCCcEEEEEc
Confidence 5677888999999999999999976
No 21
>PF11259 DUF3060: Protein of unknown function (DUF3060); InterPro: IPR021417 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed.
Probab=20.10 E-value=98 Score=20.89 Aligned_cols=12 Identities=42% Similarity=0.722 Sum_probs=5.8
Q ss_pred cCCCCeEEEEEc
Q 029942 135 LSGSDNIIAFTT 146 (185)
Q Consensus 135 v~g~~Nav~i~t 146 (185)
|.|.+|-|.+.+
T Consensus 20 V~G~~n~V~~~~ 31 (61)
T PF11259_consen 20 VSGSDNTVTVDS 31 (61)
T ss_pred EEcccCEEEEee
Confidence 445555554444
Done!