Query 029942
Match_columns 185
No_of_seqs 121 out of 1101
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ebf_A Homoserine dehydrogenas 100.0 3.4E-44 1.2E-48 317.6 17.3 174 5-181 152-358 (358)
2 3do5_A HOM, homoserine dehydro 100.0 3.7E-40 1.3E-44 288.8 14.6 149 5-180 150-325 (327)
3 3mtj_A Homoserine dehydrogenas 100.0 2.9E-39 9.9E-44 293.6 15.2 153 5-181 145-327 (444)
4 2ejw_A HDH, homoserine dehydro 100.0 4.4E-37 1.5E-41 270.0 14.7 150 5-181 131-309 (332)
5 3c8m_A Homoserine dehydrogenas 100.0 1.8E-36 6.1E-41 265.1 13.5 144 6-180 157-329 (331)
6 3ing_A Homoserine dehydrogenas 100.0 2.4E-36 8.1E-41 264.6 11.4 141 6-180 153-323 (325)
7 1l1c_A Transcription antitermi 22.3 59 0.002 20.6 2.4 22 139-162 9-30 (55)
8 1auu_A SACY; antitermination, 19.7 90 0.0031 19.8 2.9 21 139-162 9-29 (55)
9 1t6t_1 Putative protein; struc 18.1 39 0.0013 24.9 1.0 24 1-24 1-30 (118)
10 1t1j_A Hypothetical protein; s 16.5 1.1E+02 0.0039 22.4 3.3 22 88-109 96-117 (125)
No 1
>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*
Probab=100.00 E-value=3.4e-44 Score=317.61 Aligned_cols=174 Identities=38% Similarity=0.680 Sum_probs=161.8
Q ss_pred hhhhhhhh-cccceeeeeccccc-Cc----------------------------cccCCCcCCHh-HHHHHHHHHHHHhc
Q 029942 5 FELSEKLT-TVDASIFVCGLFLC-LN----------------------------AECNSMRIRLK-KTFFLQVIILARES 53 (185)
Q Consensus 5 ~~~~~~~~-~~d~i~~~~gi~~~-~n----------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~ 53 (185)
+...+++. .||+|.+|.||+|+ +| ||. |||+||+ +|+|+|++||||++
T Consensus 152 i~~l~~~l~~G~~I~~I~GIlnGT~nyil~~m~~~~~~g~~f~~~l~eAq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~ 230 (358)
T 1ebf_A 152 ISFLREIIQTGDEVEKIEGIFSGTLSYIFNEFSTSQANDVKFSDVVKVAKKLGYTEP-DPRDDLNGLDVARKVTIVGRIS 230 (358)
T ss_dssp HHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHTCSCS-STHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCeEEEEEEEeecceeeecccccccccCCCHHHHHHHHHHcCCCCC-CcccCCCChhHHHHHHHHHHhc
Confidence 34556666 79999999999994 33 565 9999999 99999999999999
Q ss_pred CCCCCCCC-eeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCc
Q 029942 54 GLKLELSD-LPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPF 132 (185)
Q Consensus 54 G~~i~~~d-V~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pL 132 (185)
|++++++| |++++++|+++++..+.++|+++|+.+|..|++++++|+++|+++||||.++..+++++|+|+.+|++|||
T Consensus 231 g~~~~~~d~v~~egi~p~~~~~~~~~~~f~~~l~~~d~~~~~~~~~A~~~g~~iklv~~~~~~~~~~~v~~~~v~~~~pl 310 (358)
T 1ebf_A 231 GVEVESPTSFPVQSLIPKPLESVKSADEFLEKLSDYDKDLTQLKKEAATENKVLRFIGKVDVATKSVSVGIEKYDYSHPF 310 (358)
T ss_dssp TCCCCCTTSSCBCCCSCGGGSTTSCTHHHHHHHGGGHHHHHHHHHHHTTTTEEEEEEEEEETTTTEEEEEEEEEESSSGG
T ss_pred CCCCCCCCeeEEeccccccccccccHHHHHhcCcccchhhHHHHHHHHHCCCEEEEEEEEEeCCCeEEEEEEEECCCCcc
Confidence 99999999 99999999999999889999999999999999999999999999999999987545899999999999999
Q ss_pred cccCCCCeEEEEEcCcc-CCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942 133 AQLSGSDNIIAFTTKRY-KEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 133 a~v~g~~Nav~i~td~~-g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~ 181 (185)
++|+|++|+|.|+|+++ + |++|+|+|||+.+||+||++||+++++++
T Consensus 311 a~v~g~~N~v~~~~~~~~~--~~~~~G~GAG~~~TA~av~~Dii~i~~~~ 358 (358)
T 1ebf_A 311 ASLKGSDNVISIKTKRYTN--PVVIQGAGAGAAVTAAGVLGDVIKIAQRL 358 (358)
T ss_dssp GGCCTTCEEEEEEESSCSS--CEEEEECCCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCCCEEEEEeccccCc--cEEEEecCCChHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999 6 99999999999999999999999999864
No 2
>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=3.7e-40 Score=288.82 Aligned_cols=149 Identities=26% Similarity=0.348 Sum_probs=138.3
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHhcCCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARESGLKL 57 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~G~~i 57 (185)
+...+++.++|.|.+|.||+|+ +| ||. |||+||+ +|+|||++||||++|.++
T Consensus 150 i~~l~~~l~~~~I~~I~GIlnGT~nyilt~m~~~g~~f~~~l~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~g~~~ 228 (327)
T 3do5_A 150 VKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEA-DPSYDVEGIDAALKLVIIANTIGVKA 228 (327)
T ss_dssp HHHHHTTTTTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSCS-SCHHHHTSHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHhhCCCccEEEEEECCCcCcchhhcCcCCcCHHHHHHHHHHcCCCCC-CchhhcCChhHHHHHHHHHHhhCCCC
Confidence 4456677799999999999994 43 787 9999999 999999999999999999
Q ss_pred CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEecCCCCccccCC
Q 029942 58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRYKRDHPFAQLSG 137 (185)
Q Consensus 58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~vp~~~pLa~v~g 137 (185)
+++||++ +||++++ .+|+++|+++|+++||||.++. ++++|+|++||++|||+ |+|
T Consensus 229 ~~~dv~~-----~gi~~i~----------------~~~~~~A~~~g~~iklv~~~~~--~~~~V~p~~v~~~~pla-v~g 284 (327)
T 3do5_A 229 SYEDVEV-----TGITQIT----------------PEAFQVAAEKGYTIRLIAEVSR--EKLKVSPRLVPFHHPLA-IKG 284 (327)
T ss_dssp CGGGSEE-----CCSTTCC----------------HHHHHHHHTTTEEEEEEEEESS--SCEEEEEEEEETTSGGG-CCS
T ss_pred CHHHeee-----eCCCCCC----------------HHHHHHHHHCCCEEEEEEEEEC--CeEEEEEEEECCCCceE-ECC
Confidence 9999999 7899998 5899999999999999999963 47999999999999999 999
Q ss_pred CCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942 138 SDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 180 (185)
Q Consensus 138 ~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~ 180 (185)
++|+|.|+|+++| +++|+|+|||+.+||+||++||+++++.
T Consensus 285 ~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~ 325 (327)
T 3do5_A 285 TMNAAMFKTDTAG--SIFVAGRGAGKEETASAILSDLYEIYAG 325 (327)
T ss_dssp SCEEEEEEESSSC--EEEEEECCCCHHHHHHHHHHHHHHHHCC
T ss_pred CceEEEEEecccC--cEEEEeCCCCHHHHHHHHHHHHHHHhcc
Confidence 9999999999999 9999999999999999999999999874
No 3
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=100.00 E-value=2.9e-39 Score=293.56 Aligned_cols=153 Identities=18% Similarity=0.253 Sum_probs=141.4
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc-------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN-------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLK 56 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n-------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~ 56 (185)
+...+++.++|.|..|.||+|+ +| ||+ |||+||+ +|+|+|++||||+ +|.+
T Consensus 145 i~~LrelL~~~~Ig~I~GIlnGT~nyilt~m~~~g~~f~~~l~eAq~lGyaE~-DP~~Dv~G~Daa~Kl~ILa~~a~g~~ 223 (444)
T 3mtj_A 145 IKALREGLTANRIEWLAGIINGTSNFILSEMRDKGAAFDDVLKEAQRLGYAEA-DPTFDIEGIDAAHKLTILSAIAFGIP 223 (444)
T ss_dssp HHHHHTTTTTSCEEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHHHHHTSSCS-SCHHHHTSHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCceEEEEEcCCcccccccCCCCCCCHHHHHHHHHHcCCCcC-CccceecChhHHHHHHHHHHHHcCCC
Confidence 3456677799999999999994 43 787 9999999 9999999999998 5999
Q ss_pred CCCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccc
Q 029942 57 LELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQ 134 (185)
Q Consensus 57 i~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~ 134 (185)
++++||++ +||++++ ..|+++|++.|+++||||.+++.++ +++|+|++||++|||++
T Consensus 224 ~~~~dv~~-----egi~~i~----------------~~d~~~A~~~g~~ikl~~~~~~~~~~~~~~V~p~~vp~~~pla~ 282 (444)
T 3mtj_A 224 MQFERAYT-----EGISQLT----------------REDVRYAEELGYRIKLLGIARRAENGIELRVHPTLIPERRLIAN 282 (444)
T ss_dssp CCGGGCEE-----CCSTTCC----------------HHHHHHHHHTTEEEEEEEEEEECSSSEEEEEEEEEEETTSTGGG
T ss_pred CCHHHeee-----ecCCCCC----------------HHHHHHHHHCCCEEEEEEEEEEcCCcEEEEEEEEEECCCCcccc
Confidence 99999999 7999998 5889999999999999999987543 79999999999999999
Q ss_pred cCCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942 135 LSGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 135 v~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~ 181 (185)
|+|++|+|.|+|+.+| |++|+|+|||+.+||+||++||+++++++
T Consensus 283 v~g~~Nav~~~~~~~g--~~~~~G~GAG~~~TAsaV~~Dii~i~~~~ 327 (444)
T 3mtj_A 283 VDGAMNAVLVKGDAVG--PTLYYGAGAGSEPTASAVVADLVDVTRLH 327 (444)
T ss_dssp CCTTEEEEEEEETTTE--EEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEecccC--cEEEEcCCCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999 99999999999999999999999999864
No 4
>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}
Probab=100.00 E-value=4.4e-37 Score=270.02 Aligned_cols=150 Identities=25% Similarity=0.339 Sum_probs=138.6
Q ss_pred hhhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCC
Q 029942 5 FELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKL 57 (185)
Q Consensus 5 ~~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i 57 (185)
+...+ ...+++|..|.||+|+ +| +|. ||++|++ +|+|+|+.|||++ +|.++
T Consensus 131 i~~l~-~l~~~~I~~I~gI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~-dP~~Dv~G~d~a~Kl~iLa~~~~G~~~ 208 (332)
T 2ejw_A 131 LSFLE-TLRGSELLELHGILNGTTLYILQEMEKGRTYAEALLEAQRLGYAEA-DPTLDVEGIDAAHKLTLLARLLVDPGF 208 (332)
T ss_dssp HHHHH-HHTTSEEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHTTSSCS-SCHHHHTTHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHH-HhcCCCcceEEEEEecccccccCccccCCCHHHHHHHHHHCCCCCC-CCccccCchhHHHHHHHHHHHHhCCCC
Confidence 34556 7799999999999994 43 667 9999999 9999999999999 89999
Q ss_pred CCCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCcccc
Q 029942 58 ELSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQL 135 (185)
Q Consensus 58 ~~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v 135 (185)
+++||++ +||++++ .+|+++|++.|+++||||.+++.++ +++|+|+++|++|||++|
T Consensus 209 ~~~~v~~-----egi~~i~----------------~~di~~a~~~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v 267 (332)
T 2ejw_A 209 PFAEVEA-----QGIARLT----------------PEVLQKAEARGERVRLVASLFGEGGRWRAAVAPRRLPQDHPLARA 267 (332)
T ss_dssp CGGGCEE-----CCSTTCC----------------HHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEEEETTSHHHHC
T ss_pred CHHHeEe-----cCcCcCC----------------HHHHHHHHHCCCEEEEEEEEEecCCcEEEEEEEEEECCCChhhcC
Confidence 9999999 7999998 5899999999999999999988655 699999999999999999
Q ss_pred CCCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHhc
Q 029942 136 SGSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASYL 181 (185)
Q Consensus 136 ~g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~~ 181 (185)
+| |+|.|+|+.+| +++|+|+|||+.+||+||++||+++++..
T Consensus 268 ~g--N~v~~~~~~~g--~~~~~G~GAG~~~TAsav~~Di~~i~~~~ 309 (332)
T 2ejw_A 268 RG--NALWVRARPLG--EAFVTGPGAGGGATASGLFADLLRFLSGA 309 (332)
T ss_dssp SS--EEEEEEEETTE--EEEEEECCSSHHHHHHHHHHHHHHHHTTC
T ss_pred CC--CEEEeeccccC--cEEEEeCCCChHHHHHHHHHHHHHHHHhc
Confidence 99 99999999999 99999999999999999999999999864
No 5
>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*
Probab=100.00 E-value=1.8e-36 Score=265.09 Aligned_cols=144 Identities=17% Similarity=0.157 Sum_probs=129.9
Q ss_pred hhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHh-cCCCCC
Q 029942 6 ELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARE-SGLKLE 58 (185)
Q Consensus 6 ~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~-~G~~i~ 58 (185)
...+++..+|+|..|.||+|+ +| ||. ||++|++ +|+|+|++||||+ +|.+++
T Consensus 157 ~~l~~~l~g~~I~~I~GI~nGT~nyil~~m~~g~~f~~~l~eAq~~GyaE~-dP~~Dv~G~D~a~Kl~iLa~~a~g~~~~ 235 (331)
T 3c8m_A 157 SFIDYSVLPSRIKKFRGIVSLTINYFIRELANKREFDDVLSEATKLGIVEK-NYKDDLTGLDAARKSVILCNHLYGSSYR 235 (331)
T ss_dssp HHHHHHSTTCCCCEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTSSCS-SCHHHHTTHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHhhcCcccEEEEEEeccceeEecchhcCCCHHHHHHHHHHcCCCCC-CcccCCCCccHHHHHHHHHHHHhCCCCC
Confidence 344556679999999999994 43 777 9999999 9999999999997 799999
Q ss_pred CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCC--eEEEEEEEecCCCCccccC
Q 029942 59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINK--EGRVELRRYKRDHPFAQLS 136 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~--~~~V~p~~vp~~~pLa~v~ 136 (185)
++||++ +||++++ . + .|+++||||.+++.++ +++|+|++||++|||++|+
T Consensus 236 ~~~v~~-----~gi~~~~-~---------------~-------~g~~ikl~~~~~~~~~~~~~~V~p~~v~~~~pla~v~ 287 (331)
T 3c8m_A 236 LSDVFY-----EGILDQD-R---------------S-------FGKNERLVTETGIVNGKPSAESRIKSLDSNDYLLTLG 287 (331)
T ss_dssp GGGSEE-----CCCC-CC-C---------------C-------CCTTEEEEEEEEEETTEEEEEEEEEECCTTCGGGGSC
T ss_pred hhheEE-----eCcccCC-h---------------h-------cCCEEEEEEEEEEcCCcEEEEEEEEEECCCCccccCC
Confidence 999999 7898887 2 1 8999999999997655 7999999999999999999
Q ss_pred CCCeEEEEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942 137 GSDNIIAFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 180 (185)
Q Consensus 137 g~~Nav~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~ 180 (185)
|++|+|.|+|+.+| +++|+|+|||+.+||+||++||++++++
T Consensus 288 g~~N~v~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~i~~~ 329 (331)
T 3c8m_A 288 KGSLGYQLQTDTNG--TLNVSDLYDGPYETAGAVMNDLVILSMF 329 (331)
T ss_dssp TTCCEEEEECSSSC--EEEEECSSCCHHHHHHHHHHHHHHHHC-
T ss_pred CCcEEEEeeccccC--cEEEEeCCCChHHhHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999999999999999999875
No 6
>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}
Probab=100.00 E-value=2.4e-36 Score=264.59 Aligned_cols=141 Identities=19% Similarity=0.161 Sum_probs=127.7
Q ss_pred hhhhhhhcccceeeeeccccc-Cc------------------------cccCCCcCCHh-HHHHHHHHHHHHhc-CCCCC
Q 029942 6 ELSEKLTTVDASIFVCGLFLC-LN------------------------AECNSMRIRLK-KTFFLQVIILARES-GLKLE 58 (185)
Q Consensus 6 ~~~~~~~~~d~i~~~~gi~~~-~n------------------------~~~~DPt~Dv~-~DaA~Kl~ILAr~~-G~~i~ 58 (185)
..++++..+|+|.+|.||||+ +| ||. |||+||+ +|+|||++||||++ |.+++
T Consensus 153 ~~l~~~l~g~~I~~i~Gi~nGT~nyil~~m~~g~~f~~~l~~Aq~~GyaE~-DP~~Dv~G~D~a~Kl~ILa~~~~g~~~~ 231 (325)
T 3ing_A 153 SVLDYSILPSKVKRFRGIVSSTINYVIRNMANGRSLRDVVDDAIKKGIAES-NPQDDLNGLDAARKSVILVNHIFGTEYT 231 (325)
T ss_dssp HHHHHTCTTCCEEEEEEECCHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCS-STHHHHTTHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHhhCCCeeEEEEEEEeeeeEEeecccCCCCHHHHHHHHHHcCCCCC-CcccccCChhHHHHHHHHHHHHcCCCCC
Confidence 455666799999999999994 43 787 9999999 99999999999995 99999
Q ss_pred CCCeeeecCCCcCCcCCCChHHHHhcCchhhHHHHHHHHHHHHcCCcEEEEEEEEeeCCeEEEEEEEe--cCCCCccccC
Q 029942 59 LSDLPVRSFVPEPLKACASAEEFMKQLPQFDKELAKQRQEAEDAGEVLRYVGVVDAINKEGRVELRRY--KRDHPFAQLS 136 (185)
Q Consensus 59 ~~dV~v~~l~p~gi~~i~~~~~fl~~l~~~d~~~~~di~~A~~~G~~lKlva~~~~~~~~~~V~p~~v--p~~~pLa~v~ 136 (185)
++||++ +||++++ + ++++ ||||.+++.+++++|+|+++ |++|||+ |+
T Consensus 232 ~~~v~~-----~gi~~~~-~---------------~~~~---------k~v~~~~~~~~~~~V~p~~~~~~~~~pla-v~ 280 (325)
T 3ing_A 232 LNDVEY-----SGVDERS-Y---------------NAND---------RLVTEVYVDDRRPVAVSRIISLNKDDFLM-SI 280 (325)
T ss_dssp GGGSBC-----CCCCSSC-C---------------CTTE---------EEEEEEEEETTEEEEEEEEEECCTTCGGG-GS
T ss_pred HHHeee-----eCcCcCC-H---------------HHHh---------CceEEEEecCCEEEEEEEEEcCCCCCcee-eC
Confidence 999999 7888887 2 2232 99999998778999999999 9999999 99
Q ss_pred CCCeEE-EEEcCccCCcceEEEcCCCChHHHHHHHHHHHHHHHHh
Q 029942 137 GSDNII-AFTTKRYKEQPLIVRGPGAGAQVTAGGIFSDILRLASY 180 (185)
Q Consensus 137 g~~Nav-~i~td~~g~~~l~v~G~GAG~~~TA~aVlsDll~i~~~ 180 (185)
|++|+| .|+|+++| +++|+|+|||+.+||+||++||+++++.
T Consensus 281 g~~n~v~~~~~~~~g--~~~~~G~GAG~~~TA~av~~Di~~~~~~ 323 (325)
T 3ing_A 281 GMDGLGYQIETDSNG--TVNVSDIYDGPYETAGAVVNDILLLSKV 323 (325)
T ss_dssp CTTCCEEEEEESSSC--EEEEECSCCCHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEEEEEccccC--cEEEEcCCCChHHHHHHHHHHHHHHHhh
Confidence 999999 99999999 9999999999999999999999999863
No 7
>1l1c_A Transcription antiterminator LICT; protein RNA complex, antiterminator complex, RNA hairpin, transcription/RNA complex; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=22.30 E-value=59 Score=20.64 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=14.8
Q ss_pred CeEEEEEcCccCCcceEEEcCCCC
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAG 162 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG 162 (185)
.|++....+. + +++++.|+|-|
T Consensus 9 NNvvl~~~~~-~-~E~Iv~GkGIG 30 (55)
T 1l1c_A 9 NNVISVVNEQ-G-KELVVMGRGLA 30 (55)
T ss_dssp TTEEEEECTT-S-CEEEEECSSSS
T ss_pred CcEEEEEcCC-C-CEEEEEeccce
Confidence 4666644434 3 39999999977
No 8
>1auu_A SACY; antitermination, RNA binding domain, transcription regulation; NMR {Bacillus subtilis} SCOP: b.35.2.1
Probab=19.75 E-value=90 Score=19.77 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=14.4
Q ss_pred CeEEEEEcCccCCcceEEEcCCCC
Q 029942 139 DNIIAFTTKRYKEQPLIVRGPGAG 162 (185)
Q Consensus 139 ~Nav~i~td~~g~~~l~v~G~GAG 162 (185)
.|++... + -+ +++++.|+|-|
T Consensus 9 NNvvl~~-d-~~-~E~Iv~GkGIG 29 (55)
T 1auu_A 9 HNAIVVK-D-QN-EEKILLGAGIA 29 (55)
T ss_dssp SSEEEEE-C-SS-SEEEEECTTSS
T ss_pred CcEEEEe-c-CC-cEEEEEeccce
Confidence 4666633 3 33 49999999977
No 9
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=18.14 E-value=39 Score=24.87 Aligned_cols=24 Identities=38% Similarity=0.367 Sum_probs=14.8
Q ss_pred Ccchh----hhhhhhhcc--cceeeeeccc
Q 029942 1 MTKHF----ELSEKLTTV--DASIFVCGLF 24 (185)
Q Consensus 1 ~~~~~----~~~~~~~~~--d~i~~~~gi~ 24 (185)
||||| |+++.++.- +.++-|+|-.
T Consensus 1 ~~~~~~~l~e~~~~l~~~s~~~vIvVEGk~ 30 (118)
T 1t6t_1 1 MTKEPRNLSEWIKELKKASREAVILVEGKN 30 (118)
T ss_dssp ----CCSHHHHHHHHHHHTTTSEEEESSHH
T ss_pred CchhHHHHHHHHHHHHHhcCCcEEEEEChH
Confidence 78887 456666666 8999999854
No 10
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Probab=16.49 E-value=1.1e+02 Score=22.44 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHcCCcEEEE
Q 029942 88 FDKELAKQRQEAEDAGEVLRYV 109 (185)
Q Consensus 88 ~d~~~~~di~~A~~~G~~lKlv 109 (185)
.+..++.+++.|++.|..++|.
T Consensus 96 ~S~Gm~~Ei~~A~~~g~pV~~~ 117 (125)
T 1t1j_A 96 DSAGIRREMEFFEAGGQRVSLW 117 (125)
T ss_dssp GCHHHHHHHHHHHHTTCEEEEH
T ss_pred CChhHHHHHHHHHHCCCcEEEE
Confidence 5678899999999999999985
Done!