BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029943
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IGR|A Chain A, The Crystal Structure Of Ribosomal-protein-s5-alanine
Acetyltransferase From Vibrio Fischeri To 2.0a
pdb|3IGR|B Chain B, The Crystal Structure Of Ribosomal-protein-s5-alanine
Acetyltransferase From Vibrio Fischeri To 2.0a
Length = 184
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 70 WFMAICVN-NRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEW 128
+F+ + N ++ IG +S S G +GY L S+Y GKGI RAV + D F
Sbjct: 69 YFVVVDKNEHKIIGTVSYSNITRFPFHAGHVGYSLDSEYQGKGIXRRAVNVTIDWXFKA- 127
Query: 129 PHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTD 182
+L R+ A N S KVL GF++EG +KY G D I+ S ++ D
Sbjct: 128 QNLHRIXAAYIPRNEKSAKVLAALGFVKEGEAKKYLYINGAWEDHILTSKINDD 181
>pdb|2Z10|A Chain A, Crystal Structure Of Putative Acetyltransferase
pdb|2Z11|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIK-HIENKVIPHP----WFMAI 74
+ L P+ L+ + F+ D +V F S P E+ ++ H+E ++ P W AI
Sbjct: 13 VRLEPLALAHLPAFLR-HYDPEVYRFLSRAPVAPTEEALRAHLEG-LLGEPGRVNW--AI 68
Query: 75 CVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERL 134
G ISV A + + + E+G +L +WG A + F E ER+
Sbjct: 69 LFGKEVAGRISVIAPE-PEHAKLELGTMLFKPFWGSPANKEAKXLLLRHAF-EVLRAERV 126
Query: 135 EALVDVENVGSQKVLLKAGFMQEGVLRK-YFIHKGKTRDTIMFSLLSTD 182
+ VD+ N SQ+ L G ++EGVLRK + G RD +++S+L +
Sbjct: 127 QFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|2ZXV|A Chain A, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|B Chain B, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|C Chain C, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
pdb|2ZXV|D Chain D, Crystal Structure Of Putative Acetyltransferase From T.
Thermophilus Hb8
Length = 194
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIK-HIENKVIPHP----WFMAI 74
+ L P+ L+ + F+ D +V F S P E+ ++ H+E ++ P W AI
Sbjct: 13 VRLEPLALAHLPAFLR-HYDPEVXRFLSRAPVAPTEEALRAHLEG-LLGEPGRVNW--AI 68
Query: 75 CVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERL 134
G ISV A + + + E+G +L +WG A + F E ER+
Sbjct: 69 LFGKEVAGRISVIAPE-PEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAF-EVLRAERV 126
Query: 135 EALVDVENVGSQKVLLKAGFMQEGVLRK-YFIHKGKTRDTIMFSLLSTD 182
+ VD+ N SQ+ L G ++EGVLRK + G RD +++S+L +
Sbjct: 127 QFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|2Z0Z|A Chain A, Crystal Structure Of Putative Acetyltransferase
Length = 194
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIK-HIENKVIPHP----WFMAI 74
+ L P+ L+ + F+ D +V F S P E+ ++ H+E ++ P W AI
Sbjct: 13 VRLEPLALAHLPAFLR-HYDPEVYRFLSRAPVAPTEEALRAHLEG-LLGEPGRVNW--AI 68
Query: 75 CVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERL 134
G ISV A + + + E+G +L +WG A + F E ER+
Sbjct: 69 LFGKEVAGRISVIAPE-PEHAKLELGTMLFKPFWGSPANKEAKYLLLRHAF-EVLRAERV 126
Query: 135 EALVDVENVGSQKVLLKAGFMQEGVLRK-YFIHKGKTRDTIMFSLLSTD 182
+ VD+ N SQ+ L G ++EGVLRK + G RD +++S+L +
Sbjct: 127 QFKVDLRNERSQRALEALGAVREGVLRKNRRLPDGAFRDDVVYSVLKEE 175
>pdb|3TCV|A Chain A, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
pdb|3TCV|B Chain B, Crystal Structure Of A Gcn5-Related N-Acetyltransferase
From Brucella Melitensis
Length = 246
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 103 LGSKYWGKGIATRAVKMASDAIFAEWPH----LERLEALVDVENVGSQKVLLKAGFMQEG 158
+GS YWG I+ R + +F ++ R E EN S++ + GF EG
Sbjct: 129 IGSIYWGPLISRRPAATEAQFLFMQYVFDVLGYRRYEWECHNENGPSRRAAERFGFRFEG 188
Query: 159 VLRKYFIHKGKTRDTIMFSLLSTD 182
+ R++ + KG+ RDT FS+L ++
Sbjct: 189 IFRQHMVVKGRNRDTAWFSVLDSE 212
>pdb|3FBU|A Chain A, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
pdb|3FBU|B Chain B, The Crystal Structure Of The Acetyltransferase (gnat
Family) From Bacillus Anthracis
Length = 168
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 22 LRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPW--FMAICV-NN 78
+R + D + + SD V + G +T E+ ++ NK + F I + N
Sbjct: 10 IRKFEFKDWEAVHEYTSDSDVMKYIPEGVFT--EEDTRNFVNKNMGENAKNFPVILIGEN 67
Query: 79 RAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALV 138
+G I G EIG+V KY+ KG A+ A + F E L R+ A
Sbjct: 68 ILVGHIVFHKYFGEHTY--EIGWVFNPKYFNKGYASEAAQATLKYGFKEMK-LHRIIATC 124
Query: 139 DVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTD 182
EN S +V+ K G +EG +K H + D +++L +
Sbjct: 125 QPENTPSYRVMEKIGMRREGYFKKCIPHGNEWWDEYYYAILEEE 168
>pdb|2FCK|A Chain A, Structure Of A Putative Ribosomal-Protein-Serine
Acetyltransferase From Vibrio Cholerae
Length = 181
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 99 IGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEG 158
+GY +G +Y +G A+ F E L RLE + D ENV SQ + L+ G +E
Sbjct: 101 LGYWIGDRYQRQGYGKEALTALILFCF-ERLELTRLEIVCDPENVPSQALALRCGANREQ 159
Query: 159 VLRKYFIHKGKTRDTIMFSLL 179
+ F++ G+ + I+FSL+
Sbjct: 160 LAPNRFLYAGEPKAGIVFSLI 180
>pdb|1NSL|A Chain A, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|B Chain B, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|C Chain C, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|D Chain D, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|E Chain E, Crystal Structure Of Probable Acetyltransferase
pdb|1NSL|F Chain F, Crystal Structure Of Probable Acetyltransferase
Length = 184
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 96 RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155
+ EIGY + ++ GKGI T A + F E L R+ V N S+ V + GF+
Sbjct: 94 KAEIGYWIAKEFEGKGIITAACRKLITYAFEEL-ELNRVAICAAVGNEKSRAVPERIGFL 152
Query: 156 QEGVLRKYFIHKGKTRDTIMFSLLSTD 182
+EG R G D + +SLL +
Sbjct: 153 EEGKARDGLYVNGXHHDLVYYSLLKRE 179
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Query: 30 VDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNN-RAIGAISVSA 88
V+ +D V PY S EQ K + + + + ++ IG+ S+
Sbjct: 18 VEGLTALYNDPAVARQVLQMPYQSVEQRRKRLHDSADDDRLLILVALHQGDVIGSASLEQ 77
Query: 89 NQGNDKCR-GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQK 147
+ + G IG + + GKG+ +R + D I W +L R+E V +N +
Sbjct: 78 HPRIRRSHSGSIGMGVAVAWQGKGVGSRLLGELLD-IADNWMNLRRVELTVYTDNAPALA 136
Query: 148 VLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLL 179
+ K GF EG +R Y + G+ D + L
Sbjct: 137 LYRKFGFETEGEMRDYAVRDGRFVDVYSMARL 168
>pdb|3R95|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa
pdb|3R95|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa
pdb|3R96|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa And
Amp
pdb|3R96|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Acetyl-Coa And
Amp
pdb|3R9E|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Aspartyl Sulfamoyl Adenosine (Dsa)
pdb|3R9E|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Aspartyl Sulfamoyl Adenosine (Dsa)
pdb|3R9F|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Glutamyl Sulfamoyl Adenosine (Esa)
pdb|3R9F|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Glutamyl Sulfamoyl Adenosine (Esa)
pdb|3R9G|A Chain A, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Processed Microcin C7 Antibiotic
pdb|3R9G|B Chain B, Crystal Structure Of Microcin C7 Self Immunity
Acetyltransferase Mcce In Complex With Coenzyme A And
Processed Microcin C7 Antibiotic
Length = 188
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 99 IGYVLGSKYWGKGIATRAV-KMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQE 157
IGY LG+ + GKGI T A+ K+ + + + ++R V+N S L+ GF E
Sbjct: 107 IGYWLGANFQGKGIVTNAINKLIQE--YGDSGVIKRFVIKCIVDNKKSNATALRCGFTLE 164
Query: 158 GVLRKYFIHKGKTRDTIMFS 177
GVL+K I G + D ++S
Sbjct: 165 GVLQKAEILNGVSYDQNIYS 184
>pdb|3TTH|A Chain A, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|B Chain B, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|C Chain C, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|D Chain D, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|E Chain E, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|F Chain F, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|G Chain G, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|H Chain H, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|I Chain I, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|J Chain J, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|K Chain K, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
pdb|3TTH|L Chain L, Structure Of The Spermidine N1-Acetyltransferase (Speg)
From Coxiella Burnetii
Length = 170
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Query: 50 PYTSREQ----GIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGS 105
PY S + IKHI ++ F+ + + +G + ++ + R E ++
Sbjct: 37 PYESYRELEDLHIKHIHDQ--SERRFIIKDLKDNKVGLVELTEIDFIHR-RCEFAIIISP 93
Query: 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFI 165
GKG AT A + + F+ +L ++ LVD +N + + K+GF +EG L +
Sbjct: 94 GEEGKGYATEATDLTVEYAFS-ILNLHKIYLLVDEDNPAALHIYRKSGFAEEGKLVDEYY 152
Query: 166 HKGKTRDTIMFSLL 179
KG+ R I +L
Sbjct: 153 SKGRYRTAIRXYVL 166
>pdb|2I79|A Chain A, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|B Chain B, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|C Chain C, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|D Chain D, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|E Chain E, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
pdb|2I79|F Chain F, The Crystal Structure Of The Acetyltransferase Of Gnat
Family From Streptococcus Pneumoniae
Length = 172
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 76 VNNRAIGAISVSANQGNDKCR--GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPH--- 130
+N + G ++++A+Q + R G++ V+G +YW G+ + ++ A EW
Sbjct: 66 LNGKIAGIVNITADQ-RKRVRHIGDLFIVIGKRYWNNGLGSLLLEEA-----IEWAQASG 119
Query: 131 -LERLEALVDVENVGSQKVLLKAGFMQEGVL-RKYFIHKGKTRDTIMFSLL 179
L RL+ V N + + K GF+ EG R +I +GK D + L
Sbjct: 120 ILRRLQLTVQTRNQAAVHLYQKHGFVIEGSQERGAYIEEGKFIDVYLMGKL 170
>pdb|3PZJ|A Chain A, Crystal Structure Of A Probable Acetyltransferases (Gnat
Family) From Chromobacterium Violaceum Atcc 12472
pdb|3PZJ|B Chain B, Crystal Structure Of A Probable Acetyltransferases (Gnat
Family) From Chromobacterium Violaceum Atcc 12472
Length = 209
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 27/175 (15%)
Query: 20 ISLRPMDLS--DVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVN 77
+SL+P+D F ++A DD YGP+ + I ++A+ V
Sbjct: 39 VSLQPLDAPRHGAALFRLFAGDDSHWEHLPYGPFEDEDAFIT-----------WLALTVA 87
Query: 78 NRAIGAISVSANQGNDKCRGEIGYVLGSKYWGK--------GIATRAVKMASDAIF---- 125
++ A+ V + +D+ G +GY + G A R ++A++A+F
Sbjct: 88 -QSDTALYVVCAKDSDQALGFLGYRQXVQAHGAIEIGHVNFSPALRRTRLATEAVFLLLK 146
Query: 126 -AEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLL 179
A R E D N S + GF EG LR+ + K + RDT +FS L
Sbjct: 147 TAFELGYRRCEWRCDSRNAASAAAARRFGFQFEGTLRQAXVVKRRNRDTHVFSXL 201
>pdb|3EG7|A Chain A, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|B Chain B, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|C Chain C, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|D Chain D, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|E Chain E, Spermidine N1-Acetyltransferase From Vibrio Cholerae
pdb|3EG7|F Chain F, Spermidine N1-Acetyltransferase From Vibrio Cholerae
Length = 176
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 1/85 (1%)
Query: 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQ 156
E ++ ++ GKG A + A D F +L ++ V VEN + + + GF++
Sbjct: 86 AEFQIIIAPEHQGKGFARTLINRALDYSFT-ILNLHKIYLHVAVENPKAVHLYEECGFVE 144
Query: 157 EGVLRKYFIHKGKTRDTIMFSLLST 181
EG L + F G+ +D +L +
Sbjct: 145 EGHLVEEFFINGRYQDVKRXYILQS 169
>pdb|2GE3|A Chain A, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|B Chain B, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|C Chain C, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
pdb|2GE3|D Chain D, Crystal Structure Of Probable Acetyltransferase From
Agrobacterium Tumefaciens
Length = 170
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 20 ISLRPMDLSDVDDFM----VWASDDKVTHFCSYGPYTS-REQGIKHIENKVIPHPWFMAI 74
++++P+ V+ F + + K F P + R + IEN HP F+AI
Sbjct: 8 VTIKPIRAEHVESFHRALDAVSRERKYLSFLEAPPLEAVRAFVLDXIEND---HPQFVAI 64
Query: 75 CVNNRAIGAISVSANQGNDKCR-GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLER 133
+ IG + + G +G + Y KG+ R + DA A L R
Sbjct: 65 A-DGDVIGWCDIRRQDRATRAHCGTLGXGILPAYRNKGLGARLXRRTLDA--AHEFGLHR 121
Query: 134 LEALVDVENVGSQKVLLKAGFMQEGVLR 161
+E V +N + + K GF EG R
Sbjct: 122 IELSVHADNARAIALYEKIGFAHEGRAR 149
>pdb|2VZY|A Chain A, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In An Unliganded Form.
pdb|2VZY|B Chain B, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In An Unliganded Form.
pdb|2VZY|C Chain C, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In An Unliganded Form.
pdb|2VZY|D Chain D, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In An Unliganded Form.
pdb|2VZZ|A Chain A, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In Complex With Succinyl-Coa
pdb|2VZZ|B Chain B, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In Complex With Succinyl-Coa
pdb|2VZZ|C Chain C, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In Complex With Succinyl-Coa
pdb|2VZZ|D Chain D, Crystal Structure Of Rv0802c From Mycobacterium
Tuberculosis In Complex With Succinyl-Coa
Length = 218
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 13/116 (11%)
Query: 72 MAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHL 131
+A+ V+ RA+G ++S+ + + G LG +Y G G T FAE
Sbjct: 82 LAVLVDGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAE---- 137
Query: 132 ERLEALVD-----VENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTD 182
LEA V V+N S V + G+ G+ R +G + ++F L D
Sbjct: 138 --LEAQVATSRSFVDNPASIAVSRRNGYRDNGLDR--VAREGAMAEALLFRLTRDD 189
>pdb|3OWC|A Chain A, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
pdb|3OWC|B Chain B, Crystal Structure Of Gnat Superfamily Protein Pa2578 From
Pseudomonas Aeruginosa
Length = 188
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 73/178 (41%), Gaps = 13/178 (7%)
Query: 13 GDGELSDISLRPMDLSDVDDFMVW-ASDDKVTHFCSYGPYTSREQGIKHIENKVI----- 66
G G + ++ L P L W A++ ++ + GP ++ +
Sbjct: 7 GTGSVPELQLVPFQLGHFPILQRWFATEKELVQWA--GPALRHPLSLEQXHEDLAESRRR 64
Query: 67 -PHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIF 125
P + C +++ IG + ++ N R VL G+G+ ++ F
Sbjct: 65 PPLRLLWSACRDDQVIGHCQLLFDRRNGVVR-LARIVLAPSARGQGLGLPXLEALLAEAF 123
Query: 126 AEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTR-DTIMFSLLSTD 182
A+ +ER+E V N ++ + +AGF +EG LR+ G+ R + ++ LL +
Sbjct: 124 AD-ADIERVELNVYDWNAAARHLYRRAGFREEG-LRRSATRVGRERWNVVLXGLLRQE 179
>pdb|3LD2|A Chain A, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|B Chain B, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|C Chain C, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
pdb|3LD2|D Chain D, The Crystal Structure Of Smu.2055 From Streptococcus
Mutans Ua159
Length = 197
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 70/165 (42%), Gaps = 22/165 (13%)
Query: 22 LRPMDLSDVDDFM-----VWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV 76
+ P LSD++ + W+ + P S++Q I+ E+ + F+ +
Sbjct: 37 ISPXLLSDIEQVVELENKTWSEQNTPVPL----PVASKDQIIQKFES----NTHFLVAKI 88
Query: 77 NNRAIGAISVSANQGNDKCRGEI--GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERL 134
++ +G + S+ + + G + K KGI V++ + + +++
Sbjct: 89 KDKIVGVLDYSSLYPFPSGQHIVTFGIAVAEKERRKGIGRALVQIFLNEVKSDYQ----- 143
Query: 135 EALVDVENVGSQKVLL--KAGFMQEGVLRKYFIHKGKTRDTIMFS 177
+ L+ V + + VL K GF E L K F KG+ D +++S
Sbjct: 144 KVLIHVLSSNQEAVLFYKKLGFDLEARLTKQFFLKGQYVDDLIYS 188
>pdb|1DTO|A Chain A, Crystal Structure Of The Complete Transactivation Domain
Of E2 Protein From The Human Papillomavirus Type 16
Length = 221
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 51 YTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVS 87
Y +RE G KHI ++V+P +A+ N+A+ AI +
Sbjct: 64 YKAREMGFKHINHQVVP---TLAVS-KNKALQAIELQ 96
>pdb|2NNU|A Chain A, Crystal Structure Of The Papillomavirus Dna Tethering
Complex E2:brd4
Length = 205
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 51 YTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVS 87
Y +RE G KHI ++V+P +A+ N+A+ AI +
Sbjct: 48 YKAREMGFKHINHQVVP---TLAVS-KNKALQAIELQ 80
>pdb|2XQY|G Chain G, Crystal Structure Of Pseudorabies Core Fragment Of
Glycoprotein H In Complex With Fab D6.3
pdb|2XQY|J Chain J, Crystal Structure Of Pseudorabies Core Fragment Of
Glycoprotein H In Complex With Fab D6.3
Length = 261
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 97 GEIGYVLGSKYWGKG--IATRAVKMASDAIF 125
G +GYV G YWG+G + + K + +++
Sbjct: 103 GRLGYVYGFDYWGQGTTLTVSSAKTTAPSVY 133
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 21/96 (21%)
Query: 69 PWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEW 128
P + A + + + N NDK R +I + + +F
Sbjct: 267 PIYYASSLAKKCMAVYQTYVNAMNDKIRKQIN------------------INNPFVFK-- 306
Query: 129 PHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164
H+ L+++ +++G V+ G MQ G+ R+ F
Sbjct: 307 -HISNLKSMDHFDDIGPSVVMASPGMMQSGLSRELF 341
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,527,796
Number of Sequences: 62578
Number of extensions: 220248
Number of successful extensions: 513
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 488
Number of HSP's gapped (non-prelim): 27
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)