Query 029943
Match_columns 185
No_of_seqs 189 out of 1534
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:05:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10151 ribosomal-protein-L7/ 100.0 7E-30 1.5E-34 174.2 18.2 166 14-181 5-177 (179)
2 PRK15130 spermidine N1-acetylt 100.0 5E-30 1.1E-34 175.9 17.5 168 15-184 2-170 (186)
3 PRK10809 ribosomal-protein-S5- 100.0 1.8E-29 3.9E-34 174.3 18.7 173 11-184 9-191 (194)
4 PRK10140 putative acetyltransf 100.0 5.1E-27 1.1E-31 157.6 19.2 159 19-180 3-162 (162)
5 TIGR03585 PseH pseudaminic aci 100.0 5.7E-27 1.2E-31 156.4 16.1 154 21-177 2-156 (156)
6 PF13420 Acetyltransf_4: Acety 100.0 9.6E-27 2.1E-31 155.2 16.3 152 22-175 1-155 (155)
7 COG1670 RimL Acetyltransferase 99.9 8.3E-25 1.8E-29 149.7 16.9 169 15-184 5-183 (187)
8 PF13302 Acetyltransf_3: Acety 99.9 1E-24 2.2E-29 143.2 14.0 135 19-155 1-142 (142)
9 COG1247 Sortase and related ac 99.9 3.1E-23 6.8E-28 136.6 16.6 161 20-182 2-166 (169)
10 TIGR03827 GNAT_ablB putative b 99.9 9.1E-23 2E-27 147.0 13.9 153 16-179 112-265 (266)
11 PRK09491 rimI ribosomal-protei 99.9 1.1E-20 2.4E-25 124.8 15.9 143 20-179 2-145 (146)
12 PF13523 Acetyltransf_8: Acety 99.9 1.2E-20 2.6E-25 125.4 14.6 137 22-161 1-143 (152)
13 PRK10146 aminoalkylphosphonic 99.9 3E-20 6.5E-25 122.3 12.5 133 18-159 2-138 (144)
14 TIGR02382 wecD_rffC TDP-D-fuco 99.8 8.3E-20 1.8E-24 125.7 14.6 138 17-161 41-187 (191)
15 PRK03624 putative acetyltransf 99.8 2.4E-19 5.2E-24 117.2 15.3 129 19-160 2-131 (140)
16 PLN02706 glucosamine 6-phospha 99.8 1.8E-19 3.8E-24 119.5 13.0 132 17-159 4-144 (150)
17 TIGR02406 ectoine_EctA L-2,4-d 99.8 1.8E-19 4E-24 120.1 13.1 135 22-167 1-136 (157)
18 PRK10514 putative acetyltransf 99.8 2.5E-19 5.4E-24 118.1 12.7 141 20-178 2-143 (145)
19 PTZ00330 acetyltransferase; Pr 99.8 9.6E-19 2.1E-23 115.5 14.4 132 18-160 5-142 (147)
20 PRK10975 TDP-fucosamine acetyl 99.8 7.5E-19 1.6E-23 121.3 14.4 136 19-161 46-190 (194)
21 KOG3216 Diamine acetyltransfer 99.8 4.4E-18 9.6E-23 108.0 13.6 138 18-159 2-146 (163)
22 TIGR01575 rimI ribosomal-prote 99.8 1.1E-17 2.3E-22 108.2 14.1 122 29-165 1-122 (131)
23 PRK10562 putative acetyltransf 99.8 1.8E-17 3.9E-22 109.2 13.9 142 22-181 2-143 (145)
24 KOG3139 N-acetyltransferase [G 99.8 6.3E-17 1.4E-21 103.9 14.7 103 71-178 57-162 (165)
25 PRK09831 putative acyltransfer 99.8 3.5E-17 7.6E-22 108.1 12.5 138 20-180 1-145 (147)
26 PF00583 Acetyltransf_1: Acety 99.7 1.6E-16 3.4E-21 94.7 11.2 79 75-155 2-83 (83)
27 TIGR03448 mycothiol_MshD mycot 99.7 1.1E-15 2.4E-20 111.9 15.7 139 17-160 147-289 (292)
28 PRK07757 acetyltransferase; Pr 99.7 6.9E-16 1.5E-20 102.5 12.9 121 20-160 2-123 (152)
29 COG3981 Predicted acetyltransf 99.7 1.2E-15 2.5E-20 99.3 12.5 143 18-162 2-162 (174)
30 TIGR03103 trio_acet_GNAT GNAT- 99.7 1.4E-15 3.1E-20 119.2 15.4 134 17-162 80-220 (547)
31 TIGR01686 FkbH FkbH-like domai 99.7 1.9E-15 4.1E-20 111.7 14.1 128 18-157 185-319 (320)
32 COG0456 RimI Acetyltransferase 99.7 3.4E-15 7.4E-20 101.4 13.7 140 17-166 9-161 (177)
33 PHA00673 acetyltransferase dom 99.7 9E-15 2E-19 95.4 13.8 130 25-159 12-146 (154)
34 PRK07922 N-acetylglutamate syn 99.7 2.4E-15 5.3E-20 101.4 11.3 122 18-159 4-127 (169)
35 PHA01807 hypothetical protein 99.6 7.8E-15 1.7E-19 96.6 12.4 126 24-153 8-137 (153)
36 KOG4135 Predicted phosphogluco 99.6 1.1E-14 2.5E-19 92.0 12.2 143 15-159 9-170 (185)
37 PLN02825 amino-acid N-acetyltr 99.6 3.9E-15 8.5E-20 114.8 11.2 134 9-160 357-491 (515)
38 KOG3396 Glucosamine-phosphate 99.6 9.3E-15 2E-19 91.1 10.2 131 19-160 6-145 (150)
39 PF13673 Acetyltransf_10: Acet 99.6 1.4E-14 3E-19 91.9 10.9 82 61-154 35-117 (117)
40 PF13527 Acetyltransf_9: Acety 99.6 2.1E-14 4.5E-19 92.4 11.0 121 21-156 1-126 (127)
41 TIGR01890 N-Ac-Glu-synth amino 99.6 1.7E-14 3.6E-19 110.7 11.4 132 11-160 274-406 (429)
42 TIGR03448 mycothiol_MshD mycot 99.6 8.7E-14 1.9E-18 101.9 13.1 128 23-162 4-131 (292)
43 PRK05279 N-acetylglutamate syn 99.6 3.4E-14 7.5E-19 109.4 11.0 131 11-159 286-417 (441)
44 COG1246 ArgA N-acetylglutamate 99.6 9E-14 2E-18 89.5 10.5 121 21-159 2-123 (153)
45 PF13508 Acetyltransf_7: Acety 99.5 1.8E-13 3.9E-18 80.7 10.5 75 70-156 4-79 (79)
46 PRK10314 putative acyltransfer 99.5 1.8E-13 3.9E-18 90.8 11.0 86 69-159 48-134 (153)
47 PRK12308 bifunctional arginino 99.5 1.1E-13 2.3E-18 110.4 10.7 124 18-161 462-586 (614)
48 KOG3235 Subunit of the major N 99.5 7.8E-13 1.7E-17 84.7 10.9 135 20-167 2-143 (193)
49 COG3393 Predicted acetyltransf 99.5 1.3E-12 2.9E-17 91.0 12.3 136 17-164 131-267 (268)
50 PRK01346 hypothetical protein; 99.5 5E-12 1.1E-16 96.8 14.9 131 18-164 5-141 (411)
51 PF08445 FR47: FR47-like prote 99.4 1.2E-11 2.5E-16 73.9 12.3 60 97-159 23-82 (86)
52 KOG3138 Predicted N-acetyltran 99.4 2.4E-12 5.2E-17 86.3 7.4 148 19-178 16-171 (187)
53 KOG2488 Acetyltransferase (GNA 99.4 6.9E-12 1.5E-16 83.0 8.5 84 78-163 102-186 (202)
54 TIGR00124 cit_ly_ligase [citra 99.3 4E-11 8.7E-16 88.5 12.8 99 53-163 11-113 (332)
55 cd02169 Citrate_lyase_ligase C 99.3 1.8E-11 4E-16 89.0 10.8 78 71-160 8-85 (297)
56 KOG3234 Acetyltransferase, (GN 99.3 6.9E-11 1.5E-15 75.8 9.5 133 21-165 3-137 (173)
57 COG3153 Predicted acetyltransf 99.3 2.9E-10 6.3E-15 75.6 12.0 130 18-163 2-135 (171)
58 PRK13688 hypothetical protein; 99.2 4.2E-10 9.1E-15 74.6 11.2 81 70-160 46-134 (156)
59 PF12746 GNAT_acetyltran: GNAT 99.2 3.2E-09 7E-14 75.8 15.8 126 18-165 127-253 (265)
60 KOG3397 Acetyltransferases [Ge 99.2 7.8E-10 1.7E-14 72.2 11.2 133 13-160 6-142 (225)
61 PF08444 Gly_acyl_tr_C: Aralky 99.0 1E-09 2.2E-14 64.5 5.8 72 77-158 7-79 (89)
62 TIGR01211 ELP3 histone acetylt 99.0 7.7E-09 1.7E-13 80.7 10.9 80 77-161 422-518 (522)
63 COG2153 ElaA Predicted acyltra 99.0 1.4E-08 3E-13 64.6 9.4 85 70-159 50-136 (155)
64 cd04301 NAT_SF N-Acyltransfera 98.9 1.2E-08 2.6E-13 56.7 8.2 61 73-136 3-64 (65)
65 PF14542 Acetyltransf_CG: GCN5 98.7 9.1E-07 2E-11 51.6 10.5 71 72-152 2-72 (78)
66 PF12568 DUF3749: Acetyltransf 98.7 3.5E-07 7.7E-12 57.4 9.0 84 66-157 35-123 (128)
67 PF13718 GNAT_acetyltr_2: GNAT 98.6 4.9E-06 1.1E-10 56.8 13.2 120 53-177 14-194 (196)
68 COG5628 Predicted acetyltransf 98.5 1.9E-06 4.1E-11 53.1 8.6 92 56-156 27-120 (143)
69 KOG4144 Arylalkylamine N-acety 98.4 1.3E-07 2.8E-12 60.8 2.0 136 18-162 10-164 (190)
70 COG3818 Predicted acetyltransf 98.4 2.6E-06 5.7E-11 53.4 7.5 128 19-160 7-149 (167)
71 COG3053 CitC Citrate lyase syn 98.2 5.1E-05 1.1E-09 54.4 11.3 81 71-163 38-119 (352)
72 PF11039 DUF2824: Protein of u 98.1 7.6E-05 1.6E-09 46.8 9.8 107 67-182 36-142 (151)
73 COG2388 Predicted acetyltransf 98.1 2E-05 4.4E-10 47.8 6.0 60 68-132 14-74 (99)
74 PRK10456 arginine succinyltran 98.0 0.00011 2.4E-09 54.3 10.1 97 20-119 2-143 (344)
75 PF04958 AstA: Arginine N-succ 98.0 6.2E-05 1.3E-09 55.7 8.1 101 20-124 2-150 (342)
76 COG4552 Eis Predicted acetyltr 97.9 6.2E-05 1.3E-09 55.3 7.1 88 68-162 38-130 (389)
77 COG1444 Predicted P-loop ATPas 97.9 5.5E-05 1.2E-09 61.3 7.5 74 99-176 535-608 (758)
78 COG0454 WecD Histone acetyltra 97.8 3.8E-05 8.2E-10 47.8 4.7 44 101-154 87-130 (156)
79 COG3882 FkbH Predicted enzyme 97.8 0.00014 3E-09 55.7 8.0 131 18-159 412-550 (574)
80 TIGR03244 arg_catab_AstA argin 97.8 0.00031 6.7E-09 51.9 9.6 96 21-119 1-141 (336)
81 TIGR03245 arg_AOST_alph argini 97.8 0.00027 5.9E-09 52.1 9.1 96 21-119 1-142 (336)
82 PF06852 DUF1248: Protein of u 97.8 0.002 4.4E-08 43.6 12.6 123 22-159 7-137 (181)
83 TIGR03243 arg_catab_AOST argin 97.7 0.00043 9.3E-09 51.1 9.3 96 21-119 1-141 (335)
84 PHA01733 hypothetical protein 97.7 5.4E-05 1.2E-09 49.1 3.3 129 21-160 4-133 (153)
85 PHA00432 internal virion prote 97.6 0.00056 1.2E-08 43.8 7.5 113 21-159 2-121 (137)
86 PF13480 Acetyltransf_6: Acety 97.6 0.0035 7.5E-08 40.5 11.3 115 19-138 19-135 (142)
87 PHA00771 head assembly protein 97.3 0.0042 9E-08 38.9 8.3 105 69-182 38-142 (151)
88 PF01233 NMT: Myristoyl-CoA:pr 97.3 0.0051 1.1E-07 40.5 8.9 110 18-127 22-142 (162)
89 PF00765 Autoind_synth: Autoin 97.0 0.056 1.2E-06 37.0 13.5 98 68-171 44-166 (182)
90 PF13880 Acetyltransf_13: ESCO 96.9 0.0017 3.6E-08 36.7 3.6 25 100-124 10-34 (70)
91 COG1243 ELP3 Histone acetyltra 96.9 0.0024 5.2E-08 49.0 5.2 79 77-160 415-510 (515)
92 PF09390 DUF1999: Protein of u 96.8 0.058 1.3E-06 34.8 12.6 131 20-159 1-141 (161)
93 PF02799 NMT_C: Myristoyl-CoA: 96.7 0.038 8.2E-07 37.8 9.3 131 22-164 31-170 (190)
94 PF05301 Mec-17: Touch recepto 96.6 0.021 4.7E-07 35.7 7.0 76 77-158 17-103 (120)
95 TIGR03827 GNAT_ablB putative b 96.4 0.012 2.7E-07 42.7 6.3 64 111-183 21-84 (266)
96 KOG2535 RNA polymerase II elon 96.3 0.0094 2E-07 44.2 4.7 52 105-160 497-548 (554)
97 TIGR03019 pepcterm_femAB FemAB 96.3 0.11 2.5E-06 38.9 10.7 138 18-168 150-290 (330)
98 COG3375 Uncharacterized conser 96.2 0.13 2.7E-06 36.0 9.7 86 68-156 45-134 (266)
99 KOG3698 Hyaluronoglucosaminida 96.2 0.047 1E-06 43.3 8.2 53 106-160 827-879 (891)
100 KOG2779 N-myristoyl transferas 95.9 0.12 2.5E-06 38.7 8.7 133 20-164 261-402 (421)
101 cd04264 DUF619-NAGS DUF619 dom 95.6 0.22 4.8E-06 30.4 8.1 65 72-144 11-76 (99)
102 TIGR03694 exosort_acyl putativ 95.5 0.39 8.6E-06 34.4 10.4 83 70-157 56-196 (241)
103 KOG2779 N-myristoyl transferas 95.0 0.16 3.6E-06 37.9 7.2 57 70-126 135-198 (421)
104 PRK13834 putative autoinducer 94.9 0.88 1.9E-05 31.9 13.3 88 77-170 62-175 (207)
105 KOG2036 Predicted P-loop ATPas 94.3 0.32 7E-06 39.9 7.7 29 97-125 616-644 (1011)
106 PF01853 MOZ_SAS: MOZ/SAS fami 94.3 0.38 8.2E-06 32.9 7.0 46 79-127 66-112 (188)
107 COG3138 AstA Arginine/ornithin 94.1 0.34 7.3E-06 35.2 6.8 66 20-88 2-78 (336)
108 PF04377 ATE_C: Arginine-tRNA- 93.8 1.1 2.3E-05 28.8 10.5 98 53-158 24-121 (128)
109 PRK01305 arginyl-tRNA-protein 93.8 1.8 3.8E-05 31.1 12.9 99 53-159 129-227 (240)
110 KOG4601 Uncharacterized conser 93.6 0.19 4.2E-06 35.2 4.7 51 97-152 110-160 (264)
111 KOG2747 Histone acetyltransfer 93.3 0.12 2.6E-06 39.3 3.6 59 68-126 232-291 (396)
112 cd04265 DUF619-NAGS-U DUF619 d 92.8 1.4 2.9E-05 27.0 7.4 62 74-144 14-76 (99)
113 PLN03238 probable histone acet 92.3 0.93 2E-05 33.1 6.8 47 78-127 140-187 (290)
114 KOG2696 Histone acetyltransfer 91.9 0.49 1.1E-05 35.7 5.2 56 80-136 200-257 (403)
115 PRK14852 hypothetical protein; 91.3 1.7 3.7E-05 37.5 8.3 139 18-166 27-188 (989)
116 PF11090 DUF2833: Protein of u 91.1 0.95 2.1E-05 26.7 4.8 28 131-158 56-83 (86)
117 PF09924 DUF2156: Uncharacteri 90.6 2.1 4.5E-05 31.7 7.6 111 20-140 133-248 (299)
118 PF04816 DUF633: Family of unk 90.6 2.6 5.6E-05 29.5 7.6 67 111-179 74-140 (205)
119 COG5092 NMT1 N-myristoyl trans 90.1 0.78 1.7E-05 33.9 4.8 139 18-164 257-419 (451)
120 PTZ00064 histone acetyltransfe 90.1 0.91 2E-05 35.8 5.3 46 79-127 370-416 (552)
121 PLN03239 histone acetyltransfe 89.8 1.2 2.7E-05 33.5 5.7 46 79-127 199-245 (351)
122 PF11124 Pho86: Inorganic phos 88.5 8.4 0.00018 28.6 9.4 89 70-158 170-270 (304)
123 PF04339 DUF482: Protein of un 88.2 10 0.00022 29.2 9.9 125 25-166 210-336 (370)
124 PLN00104 MYST -like histone ac 88.0 0.87 1.9E-05 35.5 4.0 46 79-127 292-338 (450)
125 PF02474 NodA: Nodulation prot 87.2 1.4 3.1E-05 29.6 4.1 51 97-153 86-137 (196)
126 COG3916 LasI N-acyl-L-homoseri 85.5 10 0.00022 26.5 12.9 87 68-159 51-163 (209)
127 PF04768 DUF619: Protein of un 85.0 9.7 0.00021 25.8 8.8 104 25-149 28-134 (170)
128 COG2401 ABC-type ATPase fused 84.8 0.54 1.2E-05 36.5 1.4 56 101-158 247-307 (593)
129 COG5092 NMT1 N-myristoyl trans 84.7 4.3 9.4E-05 30.2 5.9 102 21-126 83-196 (451)
130 PF02100 ODC_AZ: Ornithine dec 79.5 8.5 0.00018 23.9 5.1 57 101-159 28-87 (108)
131 PHA02769 hypothetical protein; 79.4 4.2 9.1E-05 25.3 3.6 45 113-160 94-140 (154)
132 COG2231 Uncharacterized protei 76.4 3.4 7.3E-05 28.8 2.9 40 110-158 121-160 (215)
133 COG5027 SAS2 Histone acetyltra 75.1 1.5 3.2E-05 32.9 1.0 39 79-120 248-287 (395)
134 PF13444 Acetyltransf_5: Acety 74.9 16 0.00035 22.1 5.6 51 67-117 28-100 (101)
135 cd08356 Glo_EDI_BRP_like_17 Th 74.0 7.8 0.00017 23.8 4.0 20 143-162 13-32 (113)
136 PRK15312 antimicrobial resista 72.4 18 0.0004 26.8 5.9 93 21-116 156-251 (298)
137 PF07395 Mig-14: Mig-14; Inte 70.4 10 0.00022 27.7 4.2 99 21-124 128-233 (264)
138 PF02388 FemAB: FemAB family; 69.0 54 0.0012 25.7 8.3 87 71-161 37-142 (406)
139 PRK04531 acetylglutamate kinas 68.3 56 0.0012 25.6 8.7 60 74-144 292-352 (398)
140 COG2384 Predicted SAM-dependen 67.5 42 0.00092 23.9 7.0 67 111-179 93-159 (226)
141 cd09012 Glo_EDI_BRP_like_24 Th 66.6 9.1 0.0002 23.8 3.2 18 142-159 11-28 (124)
142 cd08350 BLMT_like BLMT, a bleo 65.9 8.1 0.00018 23.9 2.8 19 143-161 14-32 (120)
143 PRK00756 acyltransferase NodA; 63.9 18 0.00038 24.4 4.0 50 97-152 86-136 (196)
144 PF07315 DUF1462: Protein of u 61.1 21 0.00044 21.4 3.6 45 40-84 37-81 (93)
145 cd07235 MRD Mitomycin C resist 57.7 7.8 0.00017 23.9 1.7 24 134-158 4-27 (122)
146 COG2898 Uncharacterized conser 56.9 1.1E+02 0.0024 25.1 8.1 59 77-140 401-460 (538)
147 cd08353 Glo_EDI_BRP_like_7 Thi 54.3 16 0.00034 23.3 2.8 29 130-159 3-31 (142)
148 PF14696 Glyoxalase_5: Hydroxy 53.1 6.8 0.00015 25.6 0.8 32 130-162 9-40 (139)
149 COG3473 Maleate cis-trans isom 51.4 31 0.00068 24.4 3.8 33 126-159 114-149 (238)
150 PRK02983 lysS lysyl-tRNA synth 49.0 2.1E+02 0.0045 26.1 9.1 59 77-141 429-488 (1094)
151 KOG4387 Ornithine decarboxylas 48.3 75 0.0016 21.8 5.1 57 103-160 107-166 (191)
152 cd08358 Glo_EDI_BRP_like_21 Th 47.2 32 0.00069 22.0 3.2 21 140-160 11-32 (127)
153 PF00925 GTP_cyclohydro2: GTP 46.1 51 0.0011 22.3 4.2 46 104-160 122-167 (169)
154 COG3607 Predicted lactoylgluta 44.7 25 0.00054 22.5 2.3 20 143-162 15-34 (133)
155 PF13380 CoA_binding_2: CoA bi 44.7 77 0.0017 19.8 4.8 72 77-159 37-108 (116)
156 cd04266 DUF619-NAGS-FABP DUF61 44.1 79 0.0017 19.7 8.1 62 76-144 16-83 (108)
157 TIGR02990 ectoine_eutA ectoine 43.6 36 0.00078 24.5 3.4 42 117-160 108-152 (239)
158 PF12652 CotJB: CotJB protein; 43.5 17 0.00036 21.1 1.4 37 115-153 3-39 (78)
159 cd07267 THT_Oxygenase_N N-term 43.1 31 0.00066 21.0 2.7 28 131-159 4-31 (113)
160 cd08342 HPPD_N_like N-terminal 42.4 47 0.001 21.0 3.6 28 133-161 3-31 (136)
161 cd07238 Glo_EDI_BRP_like_5 Thi 42.1 27 0.0006 21.0 2.4 16 143-158 12-28 (112)
162 KOG0207 Cation transport ATPas 42.0 1.9E+02 0.0041 25.6 7.5 39 53-91 687-725 (951)
163 PF12681 Glyoxalase_2: Glyoxal 41.6 38 0.00081 20.1 2.9 22 143-164 7-29 (108)
164 PRK14831 undecaprenyl pyrophos 41.4 33 0.00072 24.9 2.9 36 105-142 41-77 (249)
165 COG2266 GTP:adenosylcobinamide 41.2 66 0.0014 22.0 4.1 45 113-160 26-70 (177)
166 PF12953 DUF3842: Domain of un 38.6 1.1E+02 0.0024 19.8 5.0 52 106-163 6-57 (131)
167 cd08362 BphC5-RrK37_N_like N-t 38.5 86 0.0019 18.9 4.3 34 130-164 3-37 (120)
168 KOG1472 Histone acetyltransfer 37.8 9.3 0.0002 32.0 -0.4 87 70-162 420-508 (720)
169 PRK14830 undecaprenyl pyrophos 37.7 82 0.0018 23.0 4.4 32 108-141 46-77 (251)
170 PRK14837 undecaprenyl pyrophos 36.4 51 0.0011 23.6 3.1 35 105-141 27-61 (230)
171 TIGR00055 uppS undecaprenyl di 36.1 51 0.0011 23.6 3.1 35 105-141 20-54 (226)
172 cd04883 ACT_AcuB C-terminal AC 36.1 76 0.0017 17.3 3.8 28 131-158 42-70 (72)
173 cd08344 MhqB_like_N N-terminal 35.2 37 0.00081 20.5 2.2 28 131-159 3-30 (112)
174 COG2348 Peptidoglycan interpep 34.8 2.3E+02 0.0051 22.5 9.4 89 70-162 41-147 (418)
175 PRK13886 conjugal transfer pro 34.4 95 0.0021 22.5 4.3 44 110-155 12-55 (241)
176 COG5630 ARG2 Acetylglutamate s 33.2 1.9E+02 0.0041 22.7 5.7 74 77-157 381-458 (495)
177 cd07246 Glo_EDI_BRP_like_8 Thi 32.9 1E+02 0.0022 18.6 3.9 18 143-160 13-31 (122)
178 COG1724 Predicted RNA binding 32.3 68 0.0015 17.9 2.5 20 144-163 11-30 (66)
179 PRK14834 undecaprenyl pyrophos 32.3 71 0.0015 23.3 3.4 36 105-142 35-70 (249)
180 PRK14842 undecaprenyl pyrophos 32.2 66 0.0014 23.3 3.2 35 105-141 29-63 (241)
181 PRK13913 3-methyladenine DNA g 32.0 69 0.0015 22.8 3.2 38 110-156 127-164 (218)
182 TIGR00505 ribA GTP cyclohydrol 31.7 1.3E+02 0.0027 20.9 4.4 46 104-160 121-166 (191)
183 PF08973 TM1506: Domain of unk 31.5 1.3E+02 0.0027 19.6 4.1 26 130-157 67-92 (134)
184 cd08346 PcpA_N_like N-terminal 31.1 91 0.002 18.9 3.5 28 132-160 3-31 (126)
185 PTZ00129 40S ribosomal protein 31.0 1.6E+02 0.0035 19.6 6.3 47 112-160 72-130 (149)
186 PF04339 DUF482: Protein of un 31.0 2.6E+02 0.0056 21.8 9.0 88 70-161 45-162 (370)
187 PRK12303 tumor necrosis factor 31.0 1.1E+02 0.0023 19.6 3.6 50 110-159 103-152 (192)
188 PRK14841 undecaprenyl pyrophos 30.9 70 0.0015 23.0 3.1 35 105-141 24-58 (233)
189 PRK00393 ribA GTP cyclohydrola 30.9 1.5E+02 0.0032 20.7 4.7 46 104-160 124-169 (197)
190 cd00475 CIS_IPPS Cis (Z)-Isopr 30.6 69 0.0015 22.8 3.1 35 105-141 21-55 (221)
191 PF06559 DCD: 2'-deoxycytidine 30.0 27 0.00058 26.5 1.0 35 76-112 322-356 (364)
192 COG0826 Collagenase and relate 29.8 1.7E+02 0.0038 22.5 5.2 38 121-158 104-142 (347)
193 PRK14829 undecaprenyl pyrophos 29.8 63 0.0014 23.4 2.8 36 105-142 35-71 (243)
194 COG0807 RibA GTP cyclohydrolas 29.6 1.3E+02 0.0028 21.0 4.1 50 100-160 119-168 (193)
195 PRK10291 glyoxalase I; Provisi 29.2 59 0.0013 20.2 2.4 18 143-160 8-26 (129)
196 PRK14019 bifunctional 3,4-dihy 29.1 1.1E+02 0.0025 23.7 4.2 31 126-160 332-362 (367)
197 PRK14832 undecaprenyl pyrophos 29.1 64 0.0014 23.6 2.7 35 105-141 39-73 (253)
198 PRK10240 undecaprenyl pyrophos 28.5 63 0.0014 23.2 2.6 35 105-141 14-48 (229)
199 KOG3014 Protein involved in es 28.4 86 0.0019 22.8 3.2 44 100-144 188-232 (257)
200 COG0623 FabI Enoyl-[acyl-carri 28.3 1E+02 0.0022 22.4 3.4 39 103-142 151-189 (259)
201 PF00903 Glyoxalase: Glyoxalas 27.9 1.1E+02 0.0024 18.4 3.5 30 131-161 2-32 (128)
202 PRK14833 undecaprenyl pyrophos 27.2 84 0.0018 22.6 3.0 35 105-141 25-59 (233)
203 PF10887 DUF2686: Protein of u 27.1 2.2E+02 0.0047 20.4 4.8 80 77-160 160-245 (276)
204 cd08349 BLMA_like Bleomycin bi 27.1 62 0.0013 19.2 2.2 18 143-160 10-28 (112)
205 PF12261 T_hemolysin: Thermost 26.9 2.2E+02 0.0047 19.6 5.5 76 77-160 43-143 (179)
206 COG3543 Uncharacterized conser 26.5 1.2E+02 0.0026 19.6 3.2 37 104-141 13-49 (135)
207 PF01255 Prenyltransf: Putativ 26.4 57 0.0012 23.2 2.1 34 106-141 16-49 (223)
208 PF04015 DUF362: Domain of unk 26.3 1.9E+02 0.0042 19.9 4.7 49 109-159 17-67 (206)
209 PRK14839 undecaprenyl pyrophos 26.3 83 0.0018 22.8 2.8 35 105-141 30-64 (239)
210 PTZ00349 dehydrodolichyl dipho 26.2 82 0.0018 23.9 2.9 35 105-141 40-74 (322)
211 PRK09318 bifunctional 3,4-dihy 26.1 1.8E+02 0.0038 22.9 4.8 48 103-161 309-356 (387)
212 PRK09319 bifunctional 3,4-dihy 25.8 1.7E+02 0.0037 24.2 4.7 47 104-161 333-379 (555)
213 KOG1602 Cis-prenyltransferase 25.8 1.5E+02 0.0033 21.8 4.0 34 106-141 58-91 (271)
214 cd07240 ED_TypeI_classII_N N-t 25.7 79 0.0017 18.9 2.5 21 142-162 13-34 (117)
215 PRK14840 undecaprenyl pyrophos 25.6 86 0.0019 22.9 2.8 35 105-141 43-77 (250)
216 COG4837 Uncharacterized protei 25.3 1.7E+02 0.0036 17.8 4.7 46 39-84 43-88 (106)
217 PF02794 HlyC: RTX toxin acylt 25.2 1.9E+02 0.0041 18.8 4.1 38 52-90 19-56 (133)
218 cd07253 Glo_EDI_BRP_like_2 Thi 24.0 1.1E+02 0.0023 18.4 2.9 31 130-161 3-34 (125)
219 cd07263 Glo_EDI_BRP_like_16 Th 23.8 74 0.0016 18.9 2.1 19 142-160 9-28 (119)
220 PRK14827 undecaprenyl pyrophos 23.5 82 0.0018 23.6 2.5 36 105-142 88-124 (296)
221 PF06564 YhjQ: YhjQ protein; 23.5 1.2E+02 0.0025 22.1 3.2 43 110-155 11-53 (243)
222 PF12162 STAT1_TAZ2bind: STAT1 23.3 33 0.00071 14.7 0.2 16 21-36 6-21 (23)
223 PRK14838 undecaprenyl pyrophos 23.1 1E+02 0.0022 22.4 2.8 35 105-141 31-65 (242)
224 PRK14835 undecaprenyl pyrophos 23.0 96 0.0021 23.0 2.7 35 105-141 62-96 (275)
225 PF07927 YcfA: YcfA-like prote 22.9 1.1E+02 0.0024 15.9 2.4 15 145-159 4-18 (56)
226 cd08347 PcpA_C_like C-terminal 22.4 1.4E+02 0.003 19.7 3.2 30 131-161 2-32 (157)
227 PLN02831 Bifunctional GTP cycl 22.4 2E+02 0.0043 23.2 4.4 47 104-161 363-409 (450)
228 PRK12485 bifunctional 3,4-dihy 22.4 1.8E+02 0.0039 22.7 4.2 31 126-160 335-365 (369)
229 PRK14828 undecaprenyl pyrophos 22.1 1.3E+02 0.0027 22.1 3.2 32 108-141 51-82 (256)
230 COG1428 Deoxynucleoside kinase 22.0 1.4E+02 0.0031 21.2 3.3 37 110-151 13-49 (216)
231 cd08364 FosX FosX, a fosfomyci 22.0 1.6E+02 0.0034 18.4 3.4 29 130-159 4-33 (131)
232 COG1437 CyaB Adenylate cyclase 21.8 2.3E+02 0.005 19.5 4.1 32 132-164 79-110 (178)
233 PF01136 Peptidase_U32: Peptid 21.7 2.2E+02 0.0049 20.0 4.4 25 136-160 43-67 (233)
234 cd08359 Glo_EDI_BRP_like_22 Th 21.5 1.3E+02 0.0029 18.0 2.9 22 138-159 7-30 (119)
235 PF06414 Zeta_toxin: Zeta toxi 21.4 2.8E+02 0.0061 19.0 4.8 45 112-158 77-124 (199)
236 TIGR03645 glyox_marine lactoyl 21.4 1.3E+02 0.0028 19.9 2.9 27 130-157 4-31 (162)
237 PF08901 DUF1847: Protein of u 21.3 2.1E+02 0.0045 19.3 3.7 43 117-161 43-89 (157)
238 cd07264 Glo_EDI_BRP_like_15 Th 21.1 1.5E+02 0.0032 18.0 3.1 16 143-158 12-28 (125)
239 cd08355 Glo_EDI_BRP_like_14 Th 21.1 1.1E+02 0.0025 18.5 2.6 20 141-160 9-29 (122)
240 cd07243 2_3_CTD_C C-terminal d 21.0 99 0.0021 19.9 2.3 29 131-160 7-36 (143)
241 cd07242 Glo_EDI_BRP_like_6 Thi 20.7 1.8E+02 0.0039 17.7 3.5 28 131-159 2-33 (128)
242 cd07265 2_3_CTD_N N-terminal d 20.5 92 0.002 19.0 2.0 29 130-159 4-33 (122)
243 cd07244 FosA FosA, a Fosfomyci 20.4 2.2E+02 0.0047 17.3 3.8 28 131-159 2-30 (121)
244 PF14281 PDDEXK_4: PD-(D/E)XK 20.3 88 0.0019 21.0 2.0 30 97-127 18-47 (179)
245 PRK09311 bifunctional 3,4-dihy 20.2 2.6E+02 0.0056 22.1 4.7 47 104-161 329-375 (402)
246 COG1324 CutA Uncharacterized p 20.1 2.3E+02 0.005 17.6 3.5 37 101-137 7-44 (104)
247 PRK14836 undecaprenyl pyrophos 20.0 1.2E+02 0.0026 22.2 2.7 34 106-141 36-69 (253)
248 PF10566 Glyco_hydro_97: Glyco 20.0 2.4E+02 0.0053 20.9 4.3 16 51-66 28-43 (273)
No 1
>PRK10151 ribosomal-protein-L7/L12-serine acetyltransferase; Provisional
Probab=99.97 E-value=7e-30 Score=174.20 Aligned_cols=166 Identities=22% Similarity=0.270 Sum_probs=138.5
Q ss_pred ccccCceEeecCCccCHHHHHHhhcCcce--eeeccC-CCCCCHHHHHHHHHhccC----CCCcEEEEEECCeeEEEEEE
Q 029943 14 DGELSDISLRPMDLSDVDDFMVWASDDKV--THFCSY-GPYTSREQGIKHIENKVI----PHPWFMAICVNNRAIGAISV 86 (185)
Q Consensus 14 ~~~~~~~~ir~~~~~D~~~l~~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~vG~~~~ 86 (185)
.++++++.|||++++|++.++++++++.. ..+..+ .+..+.++.+++++.... .....+++..+|++||++.+
T Consensus 5 ~~~t~rl~Lr~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~iG~~~l 84 (179)
T PRK10151 5 IPVSESLELHAVDESHVTPLHQLVCKNKTWLQQSLNWPQFVQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVLSF 84 (179)
T ss_pred EEeCCcEEEEeCCHHHHHHHHHHHHHhHHHHHhcCCCcCccCCHHHHHHHHHHHHHHHhcCCcEEEEEEECCEEEEEEEE
Confidence 45779999999999999999999965432 223333 233577888888876421 12235677679999999999
Q ss_pred EecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeec
Q 029943 87 SANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIH 166 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~ 166 (185)
....+.... +++|++|+|++||+|+|++++..+++++++.. ++++|.+.+.++|.+|+++++|+||+.+|..++....
T Consensus 85 ~~~~~~~~~-~~ig~~i~~~~~g~G~~tea~~~l~~~~~~~~-~~~ri~~~v~~~N~~S~~v~ek~Gf~~~g~~~~~~~~ 162 (179)
T PRK10151 85 NRIEPLNKT-AYIGYWLDESHQGQGIISQALQALIHHYAQSG-ELRRFVIKCRVDNPASNQVALRNGFTLEGCLKQAEYL 162 (179)
T ss_pred EeeccCCCc-eEEEEEEChhhcCCcHHHHHHHHHHHHHHhhC-CccEEEEEEcCCCHHHHHHHHHCCCEEEeEeccceEE
Confidence 887654443 99999999999999999999999999999888 9999999999999999999999999999999999989
Q ss_pred CCeEEEEEEEeeccC
Q 029943 167 KGKTRDTIMFSLLST 181 (185)
Q Consensus 167 ~g~~~d~~~~~~~~~ 181 (185)
+|.+.|.++|+++..
T Consensus 163 ~g~~~D~~~~~~~~~ 177 (179)
T PRK10151 163 NGAYDDVNLYARIID 177 (179)
T ss_pred CCEEEEEEEEEEeec
Confidence 999999999999764
No 2
>PRK15130 spermidine N1-acetyltransferase; Provisional
Probab=99.97 E-value=5e-30 Score=175.92 Aligned_cols=168 Identities=23% Similarity=0.313 Sum_probs=139.2
Q ss_pred cccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhcc-CCCCcEEEEEECCeeEEEEEEEecCCCC
Q 029943 15 GELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKV-IPHPWFMAICVNNRAIGAISVSANQGND 93 (185)
Q Consensus 15 ~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~vG~~~~~~~~~~~ 93 (185)
++++++.|||++++|++.++++.+++....+....+.....+...++.... ......|++..+|++||++.+...+...
T Consensus 2 ~~~~~l~lR~~~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~iG~~~~~~~~~~~ 81 (186)
T PRK15130 2 PSAHSVKLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVELSDLYDKHIHDQSERRFVVECDGEKAGLVELVEINHVH 81 (186)
T ss_pred CCCCeeEEecCCHHHHHHHHHHhcChHHHhhcCCcccccHHHHHHHHHHhhhcccCcEEEEEECCEEEEEEEEEeecCCC
Confidence 567899999999999999999998876555433333333444444554433 2334567777799999999998765444
Q ss_pred CceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEE
Q 029943 94 KCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDT 173 (185)
Q Consensus 94 ~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~ 173 (185)
.. ++++++|+|+|||+|+|++++..+++++++.. ++++|.+.|...|.+|++||+|+||+.++..+++...+|++.|.
T Consensus 82 ~~-~~~~~~v~~~~~g~G~g~~l~~~l~~~~~~~~-~~~rv~~~v~~~N~~s~~~yek~GF~~~~~~~~~~~~~g~~~d~ 159 (186)
T PRK15130 82 RR-AEFQIIISPEYQGKGLATRAAKLAMDYGFTVL-NLYKLYLIVDKENEKAIHIYRKLGFEVEGELIHEFFINGEYRNT 159 (186)
T ss_pred Ce-EEEEEEECHHHcCCCHHHHHHHHHHHHHhhcC-CceEEEEEEccCCHHHHHHHHHCCCEEEEEEeheEEECCEEEEE
Confidence 33 88999999999999999999999999999888 99999999999999999999999999999999888889999999
Q ss_pred EEEeeccCCCC
Q 029943 174 IMFSLLSTDPR 184 (185)
Q Consensus 174 ~~~~~~~~~~~ 184 (185)
++|++++++|.
T Consensus 160 ~~~~~~~~~~~ 170 (186)
T PRK15130 160 IRMCIFQHQYL 170 (186)
T ss_pred EEEEeeHHHHH
Confidence 99999999873
No 3
>PRK10809 ribosomal-protein-S5-alanine N-acetyltransferase; Provisional
Probab=99.97 E-value=1.8e-29 Score=174.25 Aligned_cols=173 Identities=18% Similarity=0.232 Sum_probs=135.6
Q ss_pred ccCccccCceEeecCCccCHHHHHHhhcCcce--eeeccCCC--CCCHHHH---HHHHHhccCCC-CcEEEEEE--CCee
Q 029943 11 KEGDGELSDISLRPMDLSDVDDFMVWASDDKV--THFCSYGP--YTSREQG---IKHIENKVIPH-PWFMAICV--NNRA 80 (185)
Q Consensus 11 ~~~~~~~~~~~ir~~~~~D~~~l~~l~~~~~~--~~~~~~~~--~~~~~~~---~~~~~~~~~~~-~~~~~i~~--~~~~ 80 (185)
+.+.+.++++.||+++++|++.++++++++.. ..+.+..+ ....+.. ..++....... ...|++.. ++++
T Consensus 9 ~~~~l~t~rl~LR~~~~~Da~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 88 (194)
T PRK10809 9 PKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKPWEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFALLDPDEKEI 88 (194)
T ss_pred CceeeccCcEEEEeCCHHHHHHHHHHHHhCHHhccCCCCCCcccccCHHHHHHHHHHHHHHHhcCcEEEEEEEECCCCeE
Confidence 34668899999999999999999999987421 22222111 1112222 23333332222 34566654 6799
Q ss_pred EEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 81 IGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 81 vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
||.+.+..........+++|++|+|++||+|+|+++++.+++++++.+ ++++|.+.|.+.|.+|+++|+|+||+.+|..
T Consensus 89 iG~i~l~~~~~~~~~~~eig~~i~~~~~G~G~~~ea~~~ll~~~~~~l-~l~~i~~~v~~~N~~S~~l~ek~Gf~~~g~~ 167 (194)
T PRK10809 89 IGVANFSNVVRGSFHACYLGYSLGQKWQGQGLMFEALQAAIRYMQRQQ-HMHRIMANYMPHNKRSGDLLARLGFEKEGYA 167 (194)
T ss_pred EEEEEEEeecCCCeeeEEEEEEECHHHcCCCHHHHHHHHHHHHHHhcC-CceEEEEEeeCCCHHHHHHHHHCCCcEEeee
Confidence 999999876542223489999999999999999999999999999988 9999999999999999999999999999999
Q ss_pred eeeeecCCeEEEEEEEeeccCCCC
Q 029943 161 RKYFIHKGKTRDTIMFSLLSTDPR 184 (185)
Q Consensus 161 ~~~~~~~g~~~d~~~~~~~~~~~~ 184 (185)
++....+|.+.|.++|++++.+|.
T Consensus 168 ~~~~~~~g~~~d~~~~~~~~~~~~ 191 (194)
T PRK10809 168 KDYLLIDGQWRDHVLTALTTPEWT 191 (194)
T ss_pred ccccccCCeEEEEEEeeeehhhhh
Confidence 988888999999999999999884
No 4
>PRK10140 putative acetyltransferase YhhY; Provisional
Probab=99.96 E-value=5.1e-27 Score=157.57 Aligned_cols=159 Identities=19% Similarity=0.307 Sum_probs=126.3
Q ss_pred ceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCC-CCceE
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGN-DKCRG 97 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~-~~~~~ 97 (185)
++.|||++++|++.+.++.+++.........+..+.+.+...+... .....+++..+|++||++++...... ....+
T Consensus 3 ~i~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~vG~~~~~~~~~~~~~~~~ 80 (162)
T PRK10140 3 EIVIRHAETRDYEAIRQIHAQPEVYHNTLQVPHPSDHMWQERLADR--PGIKQLVACIDGDVVGHLTIDVQQRPRRSHVA 80 (162)
T ss_pred ccEEEecchhhHHHHHHHHhCcccccccccCCCcCHHHHHHHhhcC--CCcEEEEEEECCEEEEEEEEecccccccceEE
Confidence 5899999999999999999876554332223333444444444431 12244555568999999999865432 22237
Q ss_pred EEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEe
Q 029943 98 EIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFS 177 (185)
Q Consensus 98 ~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
+++++|+|++||+|+|++++..+++++++.. +++++.+.+.++|.+|++||+|+||+..|..+.+...+|.+.|.++|+
T Consensus 81 ~~~~~v~p~~rg~Gig~~ll~~l~~~~~~~~-~~~~i~l~v~~~N~~a~~~y~k~GF~~~g~~~~~~~~~~~~~d~~~~~ 159 (162)
T PRK10140 81 DFGICVDSRWKNRGVASALMREMIEMCDNWL-RVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMA 159 (162)
T ss_pred EEEEEECHHHcCCCHHHHHHHHHHHHHHhhC-CccEEEEEEEcCCHHHHHHHHHCCCEEEeecccceeeCCeEEEEEEEE
Confidence 8899999999999999999999999998767 999999999999999999999999999999998888889999999998
Q ss_pred ecc
Q 029943 178 LLS 180 (185)
Q Consensus 178 ~~~ 180 (185)
+.+
T Consensus 160 ~~~ 162 (162)
T PRK10140 160 RVK 162 (162)
T ss_pred ecC
Confidence 764
No 5
>TIGR03585 PseH pseudaminic acid biosynthesis N-acetyl transferase. Sequences in this family are members of the pfam00583 (GNAT) superfamily of acetyltransferases and are proposed to perform a N-acetylation step in the process of pseudaminic acid biosynthesis in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci. Significantly, many genomes containing other components of this pathway lack this gene, indicating that some other N-acetyl transferases may be incolved and/or the step is optional, resulting in a non-acetylated pseudaminic acid variant sugar.
Probab=99.95 E-value=5.7e-27 Score=156.43 Aligned_cols=154 Identities=20% Similarity=0.264 Sum_probs=132.3
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC-cEEEEEECCeeEEEEEEEecCCCCCceEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP-WFMAICVNNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
.|||++++|++.+.+|++++.+..+....+..+.++...|++....... ..+++..+|++||++.+........ .+++
T Consensus 2 ~lr~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vG~~~~~~~~~~~~-~~~~ 80 (156)
T TIGR03585 2 NFTPLNSEELELVLEWRNHPDVRANMYSDHLIDWEEHLHFIEALKQDPNRRYWIVCQESRPIGVISFTDINLVHK-SAFW 80 (156)
T ss_pred CcccCCHHHHHHHHHhhCCHHHHhhccCcCCCCHHHHHHHHHHhhcCCCceEEEEEECCEEEEEEEEEecChhhC-eEEE
Confidence 4899999999999999999888777554454577788888887665433 4566666999999999987664333 3788
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEe
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFS 177 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
++++.|.+| +|+|++++..++++|++.. ++++|.+.|.+.|.+|++||+|+||+.+|..+++...+|.++|+++|.
T Consensus 81 g~~~~~~~~-~G~g~~~~~~~~~~a~~~~-~~~~i~~~v~~~N~~s~~~y~k~Gf~~~g~~~~~~~~~g~~~d~~~~~ 156 (156)
T TIGR03585 81 GIYANPFCK-PGVGSVLEEAALEYAFEHL-GLHKLSLEVLEFNNKALKLYEKFGFEREGVFRQGIFKEGEYYDVLLMY 156 (156)
T ss_pred EEEeChhhh-cCchHHHHHHHHHHHHhhC-CeeEEEEEEeccCHHHHHHHHHcCCeEeeeehhheeECCeEEEEEEeC
Confidence 988999999 9999999999999999888 999999999999999999999999999999999998999999999884
No 6
>PF13420 Acetyltransf_4: Acetyltransferase (GNAT) domain; PDB: 3DR8_A 3DR6_A 2AE6_B 2JLM_C 2J8R_A 1YVO_B 2J8M_A 2J8N_A 2BL1_A 3IWG_A ....
Probab=99.95 E-value=9.6e-27 Score=155.19 Aligned_cols=152 Identities=20% Similarity=0.337 Sum_probs=124.1
Q ss_pred eecCCccCHHHHHHhhcCcceeeeccCC-CCCCHHHHHHHHHhcc-CCCCcEEEEEE-CCeeEEEEEEEecCCCCCceEE
Q 029943 22 LRPMDLSDVDDFMVWASDDKVTHFCSYG-PYTSREQGIKHIENKV-IPHPWFMAICV-NNRAIGAISVSANQGNDKCRGE 98 (185)
Q Consensus 22 ir~~~~~D~~~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~i~~-~~~~vG~~~~~~~~~~~~~~~~ 98 (185)
||+++++|++.+.+|++++....+..+. ...+.+....++.... ......+++.. +|++||++.+....+... .++
T Consensus 1 IR~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~iiG~~~~~~~~~~~~-~~~ 79 (155)
T PF13420_consen 1 IRPATEEDLEEILKLYNEPRHEYFFTFEYPEDSEESFERWIESIIDSSKQRLFLVAEEDGKIIGYVSLRDIDPYNH-TAE 79 (155)
T ss_dssp EEE--GGGHHHHHHHHHHHHHHTSSSSCSSHS-HHHHHHHHHHHHHHHTTEEEEEEECTTEEEEEEEEEESSSGTT-EEE
T ss_pred CCCCcHHHHHHHHHHHhhhhhcceeEecCCCCCHHHHHHHHHHhcccCCCcEEEEEEcCCcEEEEEEEEeeeccCC-EEE
Confidence 7999999999999999765433333332 2246777788888763 33456777777 999999999998876444 499
Q ss_pred EEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEE
Q 029943 99 IGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIM 175 (185)
Q Consensus 99 ~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~ 175 (185)
++++|.|++|++|+|+.++..++++||+.. |+++|.+.|.+.|++|++||+++||+.+|+.+++...+|+|.|+++
T Consensus 80 ~~~~v~~~~~~~gig~~l~~~l~~~af~~~-~~~~i~~~v~~~N~~~i~~~~~~GF~~~g~~~~~~~~~~~y~D~~~ 155 (155)
T PF13420_consen 80 LSIYVSPDYRGKGIGRKLLDELIEYAFKEL-GIHKIYLEVFSSNEKAINFYKKLGFEEEGELKDHIFINGKYYDVVW 155 (155)
T ss_dssp EEEEEEGGGTTSSHHHHHHHHHHHHH-HHT-T-CEEEEEEETT-HHHHHHHHHTTEEEEEEEEEEEEETTEEEEEEE
T ss_pred EeeEEChhHCCCcHHHHHHHHHHHHhhhcc-CeEEEEEEEecCCHHHHHHHHhCCCEEEEEEecEEEECCeEEEeEC
Confidence 999999999999999999999999998888 9999999999999999999999999999999999999999999874
No 7
>COG1670 RimL Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=8.3e-25 Score=149.74 Aligned_cols=169 Identities=36% Similarity=0.465 Sum_probs=137.3
Q ss_pred cccCceEeecCCccCHHHHHHhhcCcceeeeccCCC----CCCHHHHHHHHHhccCC-CCcEEEEEE--C--CeeEEEEE
Q 029943 15 GELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGP----YTSREQGIKHIENKVIP-HPWFMAICV--N--NRAIGAIS 85 (185)
Q Consensus 15 ~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~i~~--~--~~~vG~~~ 85 (185)
+.+.++.+|++..+|+..+..+..++....+..... ....+....++...... ....|.+.. + +++||.+.
T Consensus 5 ~~~~r~~lr~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~~~ 84 (187)
T COG1670 5 LLTLRLLLREVDLEDLELLAEWANDPEVMLFWWLPPPLTPPTSDEELLRLLAEAWEDLGGGAFAIELKATGDGELIGVIG 84 (187)
T ss_pred cccceeEeecCcHhHHHHHHHHhcChHhhcccCCCCCcccccchHHHHHHHHHHHhhcCCceEEEEEEeCCCCeEEEEEE
Confidence 455788889999999999998877766655544332 34455555555553333 334455444 3 48999999
Q ss_pred EEecCC-CCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 86 VSANQG-NDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
+..... .....+++|++++|++||+|+|++++.++++++|+.. ++++|.+.|.+.|.+|+++++|+||+.+|..+...
T Consensus 85 ~~~~~~~~~~~~~~ig~~l~~~~~g~G~~tea~~~~l~~~f~~~-~l~ri~~~~~~~N~~S~rv~ek~Gf~~eg~~~~~~ 163 (187)
T COG1670 85 LSDIDRAANGDLAEIGYWLDPEYWGKGYATEALRALLDYAFEEL-GLHRIEATVDPENEASIRVYEKLGFRLEGELRQHE 163 (187)
T ss_pred EEEeccccccceEEEEEEEChHHhcCchHHHHHHHHHHHhhhhc-CceEEEEEecCCCHHHHHHHHHcCChhhhhhhhce
Confidence 998763 2222399999999999999999999999999999988 99999999999999999999999999999999988
Q ss_pred ecCCeEEEEEEEeeccCCCC
Q 029943 165 IHKGKTRDTIMFSLLSTDPR 184 (185)
Q Consensus 165 ~~~g~~~d~~~~~~~~~~~~ 184 (185)
...|.+.|.+.|++++++|.
T Consensus 164 ~~~g~~~d~~~~~~~~~e~~ 183 (187)
T COG1670 164 FIKGRWRDTVLYSLLRDEWE 183 (187)
T ss_pred eeCCeeeeEEEEEEechhhh
Confidence 88999999999999999996
No 8
>PF13302 Acetyltransf_3: Acetyltransferase (GNAT) domain; PDB: 3TTH_C 3JUW_A 2ZXV_A 2Z0Z_A 2VI7_B 3EG7_F 1YRE_C 3IGR_B 3FBU_A 2FCK_A ....
Probab=99.93 E-value=1e-24 Score=143.25 Aligned_cols=135 Identities=32% Similarity=0.525 Sum_probs=109.4
Q ss_pred ceEeecCCccCHHHHHHhhcCcceeeeccCCCC-CCHHHHHHHHHhccC----CCCcEEEEEE--CCeeEEEEEEEecCC
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKVTHFCSYGPY-TSREQGIKHIENKVI----PHPWFMAICV--NNRAIGAISVSANQG 91 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~i~~--~~~~vG~~~~~~~~~ 91 (185)
++.|||++++|++.++++.++++...+.++.+. .+.++..+++.+... .....|++.. ++++||++.+.....
T Consensus 1 Rl~lr~~~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~iG~i~~~~~~~ 80 (142)
T PF13302_consen 1 RLTLRPLTPEDADAIYEWRSDPEIRRYLPWGPPWPTLEEAEEWIQSRQDSWENHGYYYFAIEDKDDGEIIGFIGLYNIDK 80 (142)
T ss_dssp SEEEEE-HGGGHHHHHHHHTTTTHCTTSSTTTSSSSHHHHHHHHHHHHHCHHEETEEEEEEEETTTTEEEEEEEEEEEET
T ss_pred CEEEEcCCHHHHHHHHHHhcCHHHHHhcCCCCCCCCHHHHHHHHHHhhhhhhcccceEEEEEeccCCceEEEeeeeeccc
Confidence 589999999999999999988888888655333 488888888874211 1134466666 457999999966544
Q ss_pred CCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCc
Q 029943 92 NDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155 (185)
Q Consensus 92 ~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~ 155 (185)
... .+++|++|.|++||+|+|++++..+++++|+.. ++.+|.+.+.++|.+|+++++|+||+
T Consensus 81 ~~~-~~eig~~i~~~~~g~G~~~~~~~~~~~~~~~~~-~~~~i~a~~~~~N~~s~~~~~k~GF~ 142 (142)
T PF13302_consen 81 NNN-WAEIGYWIGPDYRGKGYGTEALKLLLDWAFEEL-GLHRIIATVMADNEASRRLLEKLGFE 142 (142)
T ss_dssp TTT-EEEEEEEEEGGGTTSSHHHHHHHHHHHHHHHTS-TSSEEEEEEETT-HHHHHHHHHTT-E
T ss_pred CCC-ccccccchhHHHHhhhHHHHHHHHHHHHHHhcC-CcEEEEEEECcCCHHHHHHHHHcCCC
Confidence 333 399999999999999999999999999999998 99999999999999999999999995
No 9
>COG1247 Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=3.1e-23 Score=136.60 Aligned_cols=161 Identities=15% Similarity=0.182 Sum_probs=133.2
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccC-CCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCCCC--c
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSY-GPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGNDK--C 95 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~~~--~ 95 (185)
+.||+++..|++.|.++++..-......+ ..+.+.+...+|+.......-..+++.. +|+++|++.+......+. .
T Consensus 2 ~~ir~~~~~Dl~~I~~IY~~~v~~~~a~~e~~~~~~~~~~~~~~~~~~~g~p~~V~~~~~g~v~G~a~~~~fr~r~ay~~ 81 (169)
T COG1247 2 MEIRPATAADLEAILEIYNGAVENTAATFEEDPVSLEERAAWFSGRTRDGYPVVVAEEEDGKVLGYASAGPFRERPAYRH 81 (169)
T ss_pred cEEecChHHhHHHHHHHHHHhhhcceEEEeccCCCHHHHHHHHHhcccCCceEEEEEcCCCeEEEEEEeeeccCccccce
Confidence 68999999999999999986433222222 3344888888888887764423344434 599999999999876654 3
Q ss_pred eEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEE
Q 029943 96 RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIM 175 (185)
Q Consensus 96 ~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~ 175 (185)
+.+.+++|+|+.||+|+|+++++.+++.+ ... |++.+.+.+..+|.+|+++++++||+..|..++.-...|.|.|++.
T Consensus 82 tve~SiYv~~~~~g~GiG~~Ll~~Li~~~-~~~-g~~~lva~I~~~n~aSi~lh~~~GF~~~G~~~~vg~k~g~wld~~~ 159 (169)
T COG1247 82 TVELSIYLDPAARGKGLGKKLLQALITEA-RAL-GVRELVAGIESDNLASIALHEKLGFEEVGTFPEVGDKFGRWLDLVL 159 (169)
T ss_pred EEEEEEEECcccccccHHHHHHHHHHHHH-HhC-CeEEEEEEEcCCCcHhHHHHHHCCCEEeccccccccccceEEeeee
Confidence 48889999999999999999999999999 555 9999999999999999999999999999999998888999999999
Q ss_pred EeeccCC
Q 029943 176 FSLLSTD 182 (185)
Q Consensus 176 ~~~~~~~ 182 (185)
|.+..++
T Consensus 160 ~~~~l~~ 166 (169)
T COG1247 160 MQLLLEE 166 (169)
T ss_pred eehhhcc
Confidence 9886654
No 10
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=99.90 E-value=9.1e-23 Score=146.98 Aligned_cols=153 Identities=12% Similarity=0.123 Sum_probs=119.5
Q ss_pred ccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCc
Q 029943 16 ELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKC 95 (185)
Q Consensus 16 ~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~ 95 (185)
.++.+.||+++++|++.+.+++.+.. ...+ .+.... .++.+.......++++..+|++||++.+..... ...
T Consensus 112 ~~~~~~IR~a~~~D~~~l~~L~~~v~--~~~~-~~~~~~----~~l~~~~~~~~~~~v~~~~g~iVG~~~~~~~~~-~~~ 183 (266)
T TIGR03827 112 LPEGFTLRIATEDDADAMAALYRKVF--PTYP-FPIHDP----AYLLETMKSNVVYFGVEDGGKIIALASAEMDPE-NGN 183 (266)
T ss_pred CCCceEEEECCHHHHHHHHHHHHHHh--ccCC-CCccCH----HHHHHHhcCCcEEEEEEECCEEEEEEEEecCCC-CCc
Confidence 34679999999999999999987532 1111 111122 344444433445566667999999998754332 222
Q ss_pred eEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEE
Q 029943 96 RGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTI 174 (185)
Q Consensus 96 ~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~ 174 (185)
++++ ++|+|+|||+|+|++|++.+++++. .. |+..+.+.+...|.+|+++|+|+||+.+|+.++...++|.+.|+.
T Consensus 184 -~eI~~i~V~P~yRG~GiG~~Ll~~l~~~a~-~~-g~~~l~~~~~~~n~~a~~ly~k~GF~~~G~l~n~~~i~G~~~d~~ 260 (266)
T TIGR03827 184 -AEMTDFATLPEYRGKGLAKILLAAMEKEMK-EK-GIRTAYTIARASSYGMNITFARLGYAYGGTLVNNTNISGGFESMN 260 (266)
T ss_pred -EEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HC-CCcEEEeehhhcchhHHHHHHHcCCccccEEeecceecCCcccce
Confidence 6775 7799999999999999999999995 45 999999999999999999999999999999999999999999999
Q ss_pred EEeec
Q 029943 175 MFSLL 179 (185)
Q Consensus 175 ~~~~~ 179 (185)
+|...
T Consensus 261 i~~k~ 265 (266)
T TIGR03827 261 IWYKQ 265 (266)
T ss_pred eeeec
Confidence 99753
No 11
>PRK09491 rimI ribosomal-protein-alanine N-acetyltransferase; Provisional
Probab=99.87 E-value=1.1e-20 Score=124.75 Aligned_cols=143 Identities=13% Similarity=0.151 Sum_probs=108.6
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEE
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
++||+++++|++.+.++..++.... + +.+.. ... .......+.+..++++||++.+...... . ...
T Consensus 2 ~~iR~~~~~D~~~l~~l~~~~~~~~---~----~~~~~---~~~-~~~~~~~~~~~~~~~~vG~~~~~~~~~~--~-~~~ 67 (146)
T PRK09491 2 NTISSLTPADLPAAYHIEQRAHAFP---W----SEKTF---ASN-QGERYLNLKLTVNGQMAAFAITQVVLDE--A-TLF 67 (146)
T ss_pred cchhcCChhhhHHHHHHHHhcCCCC---C----CHHHH---HHH-HhcCceEEEEEECCeEEEEEEEEeecCc--e-EEE
Confidence 5799999999999999976543221 1 22221 111 1222223445568999999998764422 1 344
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeec-CCeEEEEEEEee
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIH-KGKTRDTIMFSL 178 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~-~g~~~d~~~~~~ 178 (185)
.+.|+|++||+|+|+++++.+++.+. +. +++.+.+.+.+.|.+|++||+|+||+..+..+.+... +| +.|.+.|++
T Consensus 68 ~i~v~~~~rg~G~g~~ll~~~~~~~~-~~-~~~~~~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~~~-~~d~~~~~~ 144 (146)
T PRK09491 68 NIAVDPDYQRQGLGRALLEHLIDELE-KR-GVATLWLEVRASNAAAIALYESLGFNEVTIRRNYYPTADG-REDAIIMAL 144 (146)
T ss_pred EEEECHHHccCCHHHHHHHHHHHHHH-HC-CCcEEEEEEccCCHHHHHHHHHcCCEEeeeeeccccCCCC-ceeEEEEec
Confidence 57799999999999999999999984 55 9999999999999999999999999999998887654 55 999999987
Q ss_pred c
Q 029943 179 L 179 (185)
Q Consensus 179 ~ 179 (185)
.
T Consensus 145 ~ 145 (146)
T PRK09491 145 P 145 (146)
T ss_pred c
Confidence 4
No 12
>PF13523 Acetyltransf_8: Acetyltransferase (GNAT) domain; PDB: 2VQY_A 2BUE_A 1V0C_A 1YK3_D 2PR8_A 2QIR_A 2PRB_A 2QML_A 2PC1_A.
Probab=99.87 E-value=1.2e-20 Score=125.38 Aligned_cols=137 Identities=19% Similarity=0.264 Sum_probs=100.7
Q ss_pred eecCC-ccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhcc-CCCCcEEEEEECCeeEEEEEEEecCCCC---Cce
Q 029943 22 LRPMD-LSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKV-IPHPWFMAICVNNRAIGAISVSANQGND---KCR 96 (185)
Q Consensus 22 ir~~~-~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~vG~~~~~~~~~~~---~~~ 96 (185)
||+++ .+|++.|.+|++++.+..+..... +.+....+.+... .+....+++..+|+++|++.+....... ...
T Consensus 1 ~R~a~~~~Dl~~i~~w~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~v~~~dg~~~g~~~~~~~~~~~~~~~~~ 78 (152)
T PF13523_consen 1 LRPATTPDDLPLILQWLNQPHVREFWDQDP--SQEWVEEYPEQLEADPGHHPYVAEDDGEPIGYFEIYWPDEDYDADDGD 78 (152)
T ss_dssp EEE---GGGHHHHHHHHTSHHHHCCH-CCC--THHHHHHHHHHHCHTTTEEEEEEEETTEEEEEEEEEEGGGSS---TTE
T ss_pred CeeCccHHHHHHHHHHHHhHHHHHHccCCC--CHHHHHHHHhhhcccCCceEEEEEECCEEEEEEEEecccccccCCCCE
Confidence 79999 999999999999988776654333 3344444444332 2333566666799999999997643322 112
Q ss_pred EEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 97 GEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 97 ~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
..++.+ +++++||+|+|+.+++.+++++++.. ++++|.+.+.++|.+|+++|+|+||+.+|+..
T Consensus 79 ~~~~~~~~~~~~rg~G~g~~~~~~~~~~~~~~~-~~~~i~~~~~~~N~~~~~~~~k~GF~~~g~~~ 143 (152)
T PF13523_consen 79 RGIHRLIVDPEYRGQGLGKAMLRALIEFLFEDP-GVDRIVLDPHEDNTRAIRLYEKAGFRKVGEFE 143 (152)
T ss_dssp EEEEEEESTGGGTTSSHHHHHHHHHHHHHHTST-T--EEEEEEBTT-HHHHHHHHHTT-EEEEEEE
T ss_pred EEEeeeeechhhcCCCHHHHHHHHHHHHHHhCC-CCCEEEEecCcCCHHHHHHHHHcCCEEeeEEE
Confidence 455544 68999999999999999999998877 89999999999999999999999999999874
No 13
>PRK10146 aminoalkylphosphonic acid N-acetyltransferase; Provisional
Probab=99.85 E-value=3e-20 Score=122.32 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=97.1
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhcc-CCCCcEEEEEECCeeEEEEEEEecCCCC--C
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKV-IPHPWFMAICVNNRAIGAISVSANQGND--K 94 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~vG~~~~~~~~~~~--~ 94 (185)
+.+.||+++++|++.+.+++.+..... .+.+.....+.+.. .+...++++..+|++||++.+....... .
T Consensus 2 ~~~~ir~a~~~D~~~l~~l~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~v~~~~~~ivG~~~~~~~~~~~~~~ 74 (144)
T PRK10146 2 PACELRPATQYDTDAVYALICELKQAE-------FDHQAFRVGFNANLRDPNMRYHLALLDGEVVGMIGLHLQFHLHHVN 74 (144)
T ss_pred CccEEeeCcHhhHHHHHHHHHHHhccc-------CCHHHHHHHHHHHhcCCCceEEEEEECCEEEEEEEEEecccccccc
Confidence 468899999999999999876321111 12223233333333 3333455566699999999997643211 1
Q ss_pred ceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 95 CRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 95 ~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
..+++ .++|+|++||+|+|+.|+..++++|. .. ++..+.+.+...|.+|++||+++||...+.
T Consensus 75 ~~~~i~~l~v~p~~rg~GiG~~Ll~~~~~~a~-~~-~~~~i~l~~~~~n~~a~~fY~~~Gf~~~~~ 138 (144)
T PRK10146 75 WIGEIQELVVMPQARGLNVGSKLLAWAEEEAR-QA-GAEMTELSTNVKRHDAHRFYLREGYEQSHF 138 (144)
T ss_pred hhheeheeEECHHHcCCCHHHHHHHHHHHHHH-Hc-CCcEEEEecCCCchHHHHHHHHcCCchhhh
Confidence 11344 57799999999999999999999995 45 999999999999999999999999987653
No 14
>TIGR02382 wecD_rffC TDP-D-fucosamine acetyltransferase. This model represents the WecD protein (Formerly RffC) for the biosynthesis of enterobacterial common antigen (ECA), an outer leaflet, outer membrane glycolipid with a trisaccharide repeat unit. WecD is a member of the GNAT family of acetytransferases (pfam00583).
Probab=99.85 E-value=8.3e-20 Score=125.67 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=101.3
Q ss_pred cCceEeecCCccCHHHHHHhhcCcce-eeeccCCCCCCHHH----HHHHHHhccCCC-C-cEEEEEE-CCeeEEEEEEEe
Q 029943 17 LSDISLRPMDLSDVDDFMVWASDDKV-THFCSYGPYTSREQ----GIKHIENKVIPH-P-WFMAICV-NNRAIGAISVSA 88 (185)
Q Consensus 17 ~~~~~ir~~~~~D~~~l~~l~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~-~-~~~~i~~-~~~~vG~~~~~~ 88 (185)
...+.||+++++|++.+.+++++... ..+. .+..+.++ ...++....... . ..+++.. +|++||++.+..
T Consensus 41 ~~~~~lR~~~~~D~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~iiG~i~l~~ 118 (191)
T TIGR02382 41 TSDPGARVATETDIPALRQLASAAFALSRFR--APWYAPDDSGRFYAQWVENAVRGTFDHQCLILRDASGDPRGYVTLRE 118 (191)
T ss_pred CCCCcceeCChhhHHHHHHHHHHHhhccccC--CCCcCHHHHHHHHHHHHHHHhcCCCCCeEEEEEccCCeEEEEEEEEe
Confidence 34679999999999999999987522 2221 11122222 334444433222 2 2233333 789999999987
Q ss_pred cCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 89 NQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 89 ~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.... .++++.+ |+|++||+|+|+++++.++++|+ +. |+.+|.+.|..+|.+|++||+|+||+.+++..
T Consensus 119 ~~~~---~~~i~~l~V~p~~rGkG~G~~ll~~~~~~a~-~~-g~~~I~l~v~~~N~~A~~~Y~klGF~~~~~~~ 187 (191)
T TIGR02382 119 LNDT---DARIGLLAVFPGAQSRGIGAELMQTALNWCY-AR-GLTRLRVATQMGNTAALRLYIRSGANIESTAY 187 (191)
T ss_pred cCCC---ceEEEEEEECHHHcCCCHHHHHHHHHHHHHH-Hc-CCCEEEEEeCCCCHHHHHHHHHcCCcccccee
Confidence 6432 2677755 89999999999999999999996 46 99999999999999999999999999988754
No 15
>PRK03624 putative acetyltransferase; Provisional
Probab=99.84 E-value=2.4e-19 Score=117.19 Aligned_cols=129 Identities=14% Similarity=0.203 Sum_probs=94.8
Q ss_pred ceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccC-CCCcEEEEEECCeeEEEEEEEecCCCCCceE
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVI-PHPWFMAICVNNRAIGAISVSANQGNDKCRG 97 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~ 97 (185)
.+.||+++++|++.+.+++.+.... .+.... ...+..... .....+++..++++||++.+...... . .
T Consensus 2 ~~~ir~~~~~d~~~i~~l~~~~~~~-----~~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~vG~~~~~~~~~~--~-~ 70 (140)
T PRK03624 2 AMEIRVFRQADFEAVIALWERCDLT-----RPWNDP---EMDIERKLNHDPSLFLVAEVGGEVVGTVMGGYDGHR--G-W 70 (140)
T ss_pred ceEEEEcccccHHHHHHHHHhcCCC-----cchhhH---HHHHHHHhcCCCceEEEEEcCCcEEEEEEeeccCCC--c-e
Confidence 4789999999999999998765211 111011 111222222 23345555568999999987643221 1 3
Q ss_pred EEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 98 EIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 98 ~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
...++|+|+|||+|+|++++..+.+++.+ . +++.+.+.+.+.|.+|+++|+|+||+..+..
T Consensus 71 i~~i~v~p~~rg~Gig~~ll~~~~~~~~~-~-~~~~~~~~~~~~N~~~~~~y~k~GF~~~~~~ 131 (140)
T PRK03624 71 AYYLAVHPDFRGRGIGRALVARLEKKLIA-R-GCPKINLQVREDNDAVLGFYEALGYEEQDRI 131 (140)
T ss_pred EEEEEECHHHhCCCHHHHHHHHHHHHHHH-C-CCCEEEEEEecCcHHHHHHHHHcCCccccEE
Confidence 44677999999999999999999999854 5 9999999999999999999999999987753
No 16
>PLN02706 glucosamine 6-phosphate N-acetyltransferase
Probab=99.83 E-value=1.8e-19 Score=119.48 Aligned_cols=132 Identities=15% Similarity=0.144 Sum_probs=96.6
Q ss_pred cCceEeecCCccCHH-HHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCC-CC-cEEEEEE--CCeeEEEEEEEecCC
Q 029943 17 LSDISLRPMDLSDVD-DFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIP-HP-WFMAICV--NNRAIGAISVSANQG 91 (185)
Q Consensus 17 ~~~~~ir~~~~~D~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~~--~~~~vG~~~~~~~~~ 91 (185)
++++.||+++++|.+ .+..++.+.. ..+..+.+...+++...... .. ..+++.. +|++||++.+.....
T Consensus 4 ~~~~~ir~~~~~D~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivG~~~~~~~~~ 77 (150)
T PLN02706 4 GEKFKVRRLEISDKSKGFLELLQQLT------VVGDVTEEEFEARFQELASLGDDHLICVIEDAASGRIIATGSVFVERK 77 (150)
T ss_pred CCceEEeEhhhcccchHHHHHHHhcc------CCCCCCHHHHHHHHHHHHhCCCcEEEEEEEeCCCCcEEEEEEEEEEee
Confidence 468999999999988 5888876421 12345777777787765442 22 3344444 589999998853221
Q ss_pred CCCceEEE----EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 92 NDKCRGEI----GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 92 ~~~~~~~~----~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
.....++. .++|+|+|||+|+|++++..++++|++ . |+++|.+.+.+.|. +||+|+||+.+|.
T Consensus 78 ~~~~~~~~~~i~~i~V~~~~rg~GiG~~ll~~~~~~a~~-~-g~~~i~l~~~~~N~---~~y~k~GF~~~g~ 144 (150)
T PLN02706 78 FIRNCGKVGHIEDVVVDSAARGKGLGKKIIEALTEHARS-A-GCYKVILDCSEENK---AFYEKCGYVRKEI 144 (150)
T ss_pred cccCCCcEEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEEEEeccccH---HHHHHCcCEEehh
Confidence 11111233 367999999999999999999999965 5 99999999999995 5999999998874
No 17
>TIGR02406 ectoine_EctA L-2,4-diaminobutyric acid acetyltransferase. This enzyme family is the EctA of ectoine biosynthesis. Ectoine is a compatible solute, analagous to trehalose, betaines, etc., found often in halotolerant organisms. EctA is L-2,4-diaminobutyric acid acetyltransferase, also called DABA acetyltransferase.
Probab=99.83 E-value=1.8e-19 Score=120.12 Aligned_cols=135 Identities=13% Similarity=0.073 Sum_probs=94.7
Q ss_pred eecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCCCCceEEEE
Q 029943 22 LRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGNDKCRGEIG 100 (185)
Q Consensus 22 ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~~~~~~~~~ 100 (185)
||+++.+|++.+.++..+...... .. ......+... .....+++.. ++++||++.+..............
T Consensus 1 IR~~~~~D~~~i~~L~~~~~~~~~---~~---~~~~~~~~~~---~~~~~~v~~~~~~~ivG~~~~~~~~~~~~~~~i~~ 71 (157)
T TIGR02406 1 FRPPRIEDGAGIWELVKDCPPLDL---NS---SYAYLLLCTD---FADTSIVAESEGGEIVGFVSGYLRPDRPDVLFVWQ 71 (157)
T ss_pred CCCCccccHHHHHHHHHhCCCCCc---cc---ceehhhhhhh---cCCcEEEEEcCCCeEEEEEEEEecCCCCCeEEEEE
Confidence 689999999999999976421110 11 1111111111 1223444543 679999987754433222213336
Q ss_pred EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecC
Q 029943 101 YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHK 167 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~ 167 (185)
++|+|++||+|+|+++++.++++++.. ++..|.+.|.+.|.+|++||+|+||+......+.-+.+
T Consensus 72 l~V~p~~rg~GiG~~L~~~l~~~a~~~--~~~~i~~~v~~~N~~a~~ly~k~G~~~~~~~~~~~~~~ 136 (157)
T TIGR02406 72 VAVDPRARGKGLARRLLEALLERVACE--RVRHLETTITPDNQASRALFKALARRRGVHLIEEPFFD 136 (157)
T ss_pred EEEChHhccCcHHHHHHHHHHHHHHhC--CCCEEEEEEcCCCHHHHHHHHHhCcccCCCeEeecccc
Confidence 779999999999999999999999655 88999999999999999999999999877766544433
No 18
>PRK10514 putative acetyltransferase; Provisional
Probab=99.83 E-value=2.5e-19 Score=118.08 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=100.9
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEE-ECCeeEEEEEEEecCCCCCceEE
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAIC-VNNRAIGAISVSANQGNDKCRGE 98 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~vG~~~~~~~~~~~~~~~~ 98 (185)
+.||+++++|++.+.+++.+...... .+....+.+....++........ .+++. .++++||++.+... ..
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~iG~~~~~~~-------~~ 72 (145)
T PRK10514 2 ISIRRSRHEEGERLVAIWRRSVDATH-DFLSAEDRAEIEELVRSFLPEAP-LWVAVDERDQPVGFMLLSGG-------HM 72 (145)
T ss_pred ceeeecchhhHHHHHHHHHHHHHHhC-cccCchhHHHHHHHHHHHhccCc-eEEEEecCCcEEEEEEEecC-------cE
Confidence 57999999999999998875321111 11112234455555555443333 34443 48899999988531 12
Q ss_pred EEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEee
Q 029943 99 IGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSL 178 (185)
Q Consensus 99 ~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~ 178 (185)
-+++|+|++||+|+|++|++.+.+.+ +++.+.+...|.+|++||+|+||+.++.... ..+|...+.++|+.
T Consensus 73 ~~~~v~p~~rgkGig~~Ll~~~~~~~-------~~i~~~v~~~N~~a~~~yek~Gf~~~~~~~~--~~~~~~~~~~~~~~ 143 (145)
T PRK10514 73 EALFVDPDVRGCGVGRMLVEHALSLH-------PELTTDVNEQNEQAVGFYKKMGFKVTGRSEV--DDQGRPYPLLHLAY 143 (145)
T ss_pred eEEEECHHhccCCHHHHHHHHHHHhc-------cccEEEeecCCHHHHHHHHHCCCEEeccccc--CCCCCccceEEEEe
Confidence 26889999999999998887777643 3567889999999999999999999998764 46788888888875
No 19
>PTZ00330 acetyltransferase; Provisional
Probab=99.82 E-value=9.6e-19 Score=115.49 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=93.3
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCc--EEEEEECCeeEEEEEEEecCCC---
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPW--FMAICVNNRAIGAISVSANQGN--- 92 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~~~~vG~~~~~~~~~~--- 92 (185)
.++.||+++++|++.+.+++.... ..+..+.++...+.......... .+++..+|++||++.+......
T Consensus 5 ~~~~ir~~~~~D~~~i~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~~ 78 (147)
T PTZ00330 5 GSLELRDLEEGDLGSVLELLSHLT------SAPALSQEELEQIAARRRLAGVVTRVFVHSPTQRIVGTASLFVEPKFTRG 78 (147)
T ss_pred ceEEEEEcccccHHHHHHHHHHhc------CCCccchhHHHHHHHHHhcCCCceEEEEEeCCCEEEEEEEEEeccccccC
Confidence 368999999999999999876421 12233555566665543222222 2223337899999998754321
Q ss_pred CCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 93 DKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 93 ~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
....+.+ .++|+|+|||+|+|+++++.+++++++ . ++.++.+.+ |.+|++||+|+||+.....
T Consensus 79 ~~~~~~i~~~~V~~~~rg~Gig~~l~~~~~~~a~~-~-~~~~l~l~~---n~~a~~~y~k~GF~~~~~~ 142 (147)
T PTZ00330 79 GKCVGHIEDVVVDPSYRGQGLGRALISDLCEIARS-S-GCYKVILDC---TEDMVAFYKKLGFRACERQ 142 (147)
T ss_pred CCceEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-C-CCCEEEEec---ChHHHHHHHHCCCEEeceE
Confidence 1111233 578999999999999999999999955 4 888887654 8899999999999987643
No 20
>PRK10975 TDP-fucosamine acetyltransferase; Provisional
Probab=99.82 E-value=7.5e-19 Score=121.26 Aligned_cols=136 Identities=18% Similarity=0.233 Sum_probs=99.1
Q ss_pred ceEeecCCccCHHHHHHhhcCcce-eeeccCCCCCCHHHHH----HHHHhccCC--CCcEEEEEE-CCeeEEEEEEEecC
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKV-THFCSYGPYTSREQGI----KHIENKVIP--HPWFMAICV-NNRAIGAISVSANQ 90 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~~~i~~-~~~~vG~~~~~~~~ 90 (185)
...||+++++|++.+.++.++... ..+. .+..+.+... +|+...... ....+++.. +|++||++.+....
T Consensus 46 ~~~iR~a~~~D~~~i~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~vG~~~l~~~~ 123 (194)
T PRK10975 46 TTGARVATETDIPALRQLAAQAFAQSRFR--APWYAPDDSGRFYAQWIENAVRGTFDHQCLLLRDASGQIQGFVTLRELN 123 (194)
T ss_pred CCCcccCCcccHHHHHHHHHHHhhhcccc--CccCChhHHHHHHHHHHHHhhccccCCcEEEEEcCCCCEEEEEEEEecC
Confidence 467899999999999999876422 1221 2222333333 343332221 123334443 68999999998654
Q ss_pred CCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 91 GNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 91 ~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.. ...++.+ |.|++||+|+|+++++.+++++++ . |++++.+.|..+|.+|++||+|+||+.+++..
T Consensus 124 ~~---~~~i~~~~V~p~~rg~Gig~~Ll~~~~~~a~~-~-g~~~i~l~v~~~N~~a~~~yek~Gf~~~~~~~ 190 (194)
T PRK10975 124 DT---DARIGLLAVFPGAQGRGIGARLMQAALNWCQA-R-GLTRLRVATQMGNLAALRLYIRSGANIESTAY 190 (194)
T ss_pred CC---ceEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcHHHHHHHHHCCCeEeEEEe
Confidence 32 2667654 899999999999999999999965 5 99999999999999999999999999998764
No 21
>KOG3216 consensus Diamine acetyltransferase [Amino acid transport and metabolism]
Probab=99.80 E-value=4.4e-18 Score=107.99 Aligned_cols=138 Identities=14% Similarity=0.076 Sum_probs=99.0
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC-cEEEEEE---CCeeEEEEEEEecCCCC
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP-WFMAICV---NNRAIGAISVSANQGND 93 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~---~~~~vG~~~~~~~~~~~ 93 (185)
++++||+++++|.+.+.+++.+-.....+......+.....+-. ..++.- .+.++.. ++.++|++.+...-...
T Consensus 2 ~~~~IR~at~~D~~~i~rLikela~Fek~~~~v~~te~~l~~~~--F~d~~~~~~~v~~ie~~~~~~aGf~~yf~~ystW 79 (163)
T KOG3216|consen 2 DNIRIRLATPKDCEDILRLIKELAEFEKLEDQVEATEENLARDG--FIDPPFKHWLVAAIETSGEVVAGFALYFNNYSTW 79 (163)
T ss_pred CceEEEecCcccHHHHHHHHHHHHHHHHhccchhhchhhhhhhh--ccCCCccEEEEEEEecCCCceeEEeeeecccccc
Confidence 46899999999999999998753222222222223333333311 122222 2223322 77999999998876543
Q ss_pred Cce---EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 94 KCR---GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 94 ~~~---~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
... ..-.++|.|+|||+|+|+.|++.+.+.| ..+ |+.++..-|...|.+|+.||++.|++....
T Consensus 80 ~~k~~iYleDlyV~e~yR~kG~Gs~Ll~~va~~A-~~~-G~~rv~w~vldwN~rAi~lY~k~gaq~l~~ 146 (163)
T KOG3216|consen 80 LGKQGIYLEDLYVREQYRGKGIGSKLLKFVAEEA-DKL-GTPRVEWVVLDWNHRAILLYEKVGAQDLKE 146 (163)
T ss_pred cccceEEEEeeEecchhcccChHHHHHHHHHHHH-HHc-CCCcEEEEEeccchhHHHHHHHhCccccce
Confidence 321 2225779999999999999999999999 566 999999999999999999999999998776
No 22
>TIGR01575 rimI ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database.
Probab=99.79 E-value=1.1e-17 Score=108.16 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=89.4
Q ss_pred CHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCcc
Q 029943 29 DVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYW 108 (185)
Q Consensus 29 D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~r 108 (185)
|.+.+.++..... ....+.+.....+. ......+++..++++||++.+...... ....++.|+|++|
T Consensus 1 d~~~i~~~~~~~~-------~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~vg~~~~~~~~~~---~~i~~~~v~~~~r 67 (131)
T TIGR01575 1 DLKAVLEIEAAAF-------AFPWTEAQFAEELA---NYHLCYLLARIGGKVVGYAGVQIVLDE---AHILNIAVKPEYQ 67 (131)
T ss_pred CHHHHHHHHHhhC-------CCCCCHHHHHHHhc---CCCceEEEEecCCeEEEEEEEEecCCC---eEEEEEEECHHHc
Confidence 5667777765332 11224444444443 222233444448999999998765432 1445778999999
Q ss_pred CcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeee
Q 029943 109 GKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFI 165 (185)
Q Consensus 109 g~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~ 165 (185)
|+|+|+++++.+++++++. +++.+.+.+.+.|.+|++||+++||+.++..+.+..
T Consensus 68 g~G~g~~ll~~~~~~~~~~--~~~~i~~~~~~~n~~~~~~y~~~Gf~~~~~~~~~~~ 122 (131)
T TIGR01575 68 GQGIGRALLRELIDEAKGR--GVNEIFLEVRVSNIAAQALYKKLGFNEIAIRRNYYP 122 (131)
T ss_pred CCCHHHHHHHHHHHHHHHc--CCCeEEEEEecccHHHHHHHHHcCCCcccccccccc
Confidence 9999999999999999654 899999999999999999999999999999877543
No 23
>PRK10562 putative acetyltransferase; Provisional
Probab=99.78 E-value=1.8e-17 Score=109.24 Aligned_cols=142 Identities=12% Similarity=0.095 Sum_probs=95.5
Q ss_pred eecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEE
Q 029943 22 LRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGY 101 (185)
Q Consensus 22 ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~ 101 (185)
|||++.+|++.+.+++.++..... +.............+.+........+++..+|++||++.+.... ....+
T Consensus 2 ir~~~~~D~~~i~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~iG~~~~~~~~------~i~~~ 74 (145)
T PRK10562 2 IREYQPSDLPAILQLWLESTIWAH-PFIKEQYWRESAPLVRDVYLPAAQTWVWEEDGKLLGFVSVLEGR------FVGAL 74 (145)
T ss_pred cccccchhhHHHHHHHHHhccccC-CCCCHHHHHHhHHHhhhhhcCcccEEEEEECCEEEEEEEEeecc------EEEEE
Confidence 899999999999999876532211 11110011122233333333334556666688999999985421 22247
Q ss_pred EECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEeeccC
Q 029943 102 VLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLST 181 (185)
Q Consensus 102 ~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~ 181 (185)
+|+|++||+|+|+.+++.+.+. ++.+.+.+..+|.+|++||+|+||+.++.. ...+...+.++|.+..+
T Consensus 75 ~v~~~~rg~G~g~~ll~~~~~~-------~~~~~~~v~~~N~~s~~~y~k~Gf~~~~~~----~~~~~~~~~~~~~~~~~ 143 (145)
T PRK10562 75 FVAPKAVRRGIGKALMQHVQQR-------YPHLSLEVYQKNQRAVNFYHAQGFRIVDSA----WQEETQHPTWIMSWQAD 143 (145)
T ss_pred EECHHHcCCCHHHHHHHHHHhh-------CCeEEEEEEcCChHHHHHHHHCCCEEcccc----ccCCCCCEEEEEEecCC
Confidence 8999999999999888766552 346788899999999999999999999863 22333467777776543
No 24
>KOG3139 consensus N-acetyltransferase [General function prediction only]
Probab=99.77 E-value=6.3e-17 Score=103.92 Aligned_cols=103 Identities=24% Similarity=0.458 Sum_probs=83.1
Q ss_pred EEEEEEC--CeeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHH
Q 029943 71 FMAICVN--NRAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQK 147 (185)
Q Consensus 71 ~~~i~~~--~~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
.+++..+ +..||.+.+....+.....+++. +.|++++||+|||++|++.+++++... |++.|.++|...|.+|.+
T Consensus 57 ~~~~a~d~~~~~VGai~ck~~~~r~~~rgyi~mLaV~~e~Rg~GIg~aLvr~aId~m~~~--g~~eVvLeTe~~n~~A~~ 134 (165)
T KOG3139|consen 57 FCFLALDEKGDTVGAIVCKLDTHRNTLRGYIAMLAVDSEYRGQGIGKALVRKAIDAMRSR--GYSEVVLETEVTNLSALR 134 (165)
T ss_pred EEEEEEcCCCceEEEEEEeccccCCcceEEEEEEEechhhccccHHHHHHHHHHHHHHHC--CCcEEEEeccccchHHHH
Confidence 4444443 33699999988876653346664 559999999999999999999999555 999999999999999999
Q ss_pred HHHHcCCceeeeeeeeeecCCeEEEEEEEee
Q 029943 148 VLLKAGFMQEGVLRKYFIHKGKTRDTIMFSL 178 (185)
Q Consensus 148 ~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~ 178 (185)
+|+++||...+....+++ +|. |.+++.+
T Consensus 135 LY~sLGF~r~~r~~~YYl-ng~--dA~rl~L 162 (165)
T KOG3139|consen 135 LYESLGFKRDKRLFRYYL-NGM--DALRLKL 162 (165)
T ss_pred HHHhcCceEecceeEEEE-CCc--ceEEEEe
Confidence 999999999999888875 443 6666654
No 25
>PRK09831 putative acyltransferase; Provisional
Probab=99.75 E-value=3.5e-17 Score=108.09 Aligned_cols=138 Identities=14% Similarity=0.120 Sum_probs=94.9
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHH-------HhccCCCCcEEEEEECCeeEEEEEEEecCCC
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHI-------ENKVIPHPWFMAICVNNRAIGAISVSANQGN 92 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~ 92 (185)
+.||+++++|++.+.+++.+...... ....+.+....|. ..... ....+++..+|++||++.+...
T Consensus 1 ~~ir~a~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~iiG~~~~~~~--- 73 (147)
T PRK09831 1 IQIRNYQPGDFQQLCAIFIRAVTMTA---SQHYSPQQIAAWAQIDESRWKEKLA-KSQVRVAVINAQPVGFITCIEH--- 73 (147)
T ss_pred CccccCChhhHHHHHHHHHHHHHHhh---hhcCCHHHHHhccCCCHHHHHHHHh-cCceEEEEECCEEEEEEEehhc---
Confidence 35899999999999999864321111 1111222222221 11122 2345556669999999988531
Q ss_pred CCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEE
Q 029943 93 DKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRD 172 (185)
Q Consensus 93 ~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d 172 (185)
..-.++|+|++||+|+|+.|++.+++.+.+ + .+. .|..+++||+|+||+.+|..+. ..+|.+.|
T Consensus 74 ----~i~~~~v~p~~~g~GiG~~Ll~~~~~~~~~-------l--~v~-~~~~a~~~Y~k~Gf~~~g~~~~--~~~g~~~~ 137 (147)
T PRK09831 74 ----YIDMLFVDPEYTRRGVASALLKPLIKSESE-------L--TVD-ASITAKPFFERYGFQTVKQQRV--ECRGEWFI 137 (147)
T ss_pred ----eeeeEEECHHHcCCCHHHHHHHHHHHHhhh-------e--Eee-cchhhHHHHHHCCCEEeeccce--EECCEEEE
Confidence 233577999999999999999999987622 2 232 3578999999999999999763 35788999
Q ss_pred EEEEeecc
Q 029943 173 TIMFSLLS 180 (185)
Q Consensus 173 ~~~~~~~~ 180 (185)
.++|.+..
T Consensus 138 ~~~m~~~~ 145 (147)
T PRK09831 138 NFYMRYKP 145 (147)
T ss_pred eeEEEecC
Confidence 99998764
No 26
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=99.73 E-value=1.6e-16 Score=94.74 Aligned_cols=79 Identities=16% Similarity=0.199 Sum_probs=69.1
Q ss_pred EECCeeEEEEEEEecCCCC---CceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHH
Q 029943 75 CVNNRAIGAISVSANQGND---KCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLK 151 (185)
Q Consensus 75 ~~~~~~vG~~~~~~~~~~~---~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k 151 (185)
..+|++||++.+....... .......+.|+|+|||+|+|+.|++.+++++.+ . ++..+.+.+.+.|.++++||+|
T Consensus 2 ~~~~~ivg~~~~~~~~~~~~~~~~~~i~~~~v~~~~r~~Gig~~L~~~~~~~~~~-~-g~~~i~~~~~~~n~~~~~~~~k 79 (83)
T PF00583_consen 2 EEDGQIVGFASLRPPPEPFDHGNHAYIHRLAVDPEYRGQGIGSKLLQAAEEWARK-R-GIKRIYLDVSPDNPAARRFYEK 79 (83)
T ss_dssp EETTEEEEEEEEEEEETTTTTTTEEEEEEEEECGGGTTSSHHHHHHHHHHHHHHH-T-TESEEEEEEETTGHHHHHHHHH
T ss_pred cCCCEEEEEEEEEECCCccccCCEEEEEEEEEcHHHhhCCCchhhhhhhhhhHHh-c-CccEEEEEEeCCCHHHHHHHHH
Confidence 3589999999999987652 332444677999999999999999999999966 5 9999999999999999999999
Q ss_pred cCCc
Q 029943 152 AGFM 155 (185)
Q Consensus 152 ~Gf~ 155 (185)
+||+
T Consensus 80 ~Gf~ 83 (83)
T PF00583_consen 80 LGFE 83 (83)
T ss_dssp TTEE
T ss_pred cCCC
Confidence 9995
No 27
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.71 E-value=1.1e-15 Score=111.93 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=93.5
Q ss_pred cCceEeecCCc-cCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE--CCeeEEEEEEEecCCCC
Q 029943 17 LSDISLRPMDL-SDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV--NNRAIGAISVSANQGND 93 (185)
Q Consensus 17 ~~~~~ir~~~~-~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~vG~~~~~~~~~~~ 93 (185)
.+.+++|+++. .|.+.+.++.+... ...+.....+.+................+++.. +|++||++.+.......
T Consensus 147 ~~g~~~r~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~vG~~~~~~~~~~~ 224 (292)
T TIGR03448 147 PDGVTVRAYVGAPDDAEWLRVNNAAF--AWHPEQGGWTRADLAERRAEPWFDPAGLFLAFDDAPGELLGFHWTKVHPDEP 224 (292)
T ss_pred CCCeEeeccCCCcchHHHHHHHHHHh--hCCCccCCcCHHHHHHHhhCcCCCcCceEEEEECCCCcEEEEEEEEecCCCC
Confidence 46899999864 47777777654321 111111122344443332221111233455555 58999997665533222
Q ss_pred CceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 94 KCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 94 ~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
. ...+. +.|+|+|||+|+|++|+..+++++++ . |+..+.+.+.+.|.+|++||+|+||+..+..
T Consensus 225 ~-~~~i~~~~V~p~~rg~GiG~~ll~~~~~~~~~-~-g~~~v~l~v~~~N~~a~~~y~k~GF~~~~~~ 289 (292)
T TIGR03448 225 A-LGEVYVVGVDPAAQGRGLGDALTLIGLHHLAA-R-GLPAVMLYVEADNEAAVRTYEKLGFTVAEVD 289 (292)
T ss_pred c-eeEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-C-CCCEEEEEEeCCCHHHHHHHHHcCCEEcccc
Confidence 1 14443 56999999999999999999999965 4 8999999999999999999999999987654
No 28
>PRK07757 acetyltransferase; Provisional
Probab=99.70 E-value=6.9e-16 Score=102.45 Aligned_cols=121 Identities=19% Similarity=0.190 Sum_probs=87.7
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEE
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
+.||+++++|++.+.++.++...... ....+.+.....+ ...+++..+|++||++.+...... . +++
T Consensus 2 ~~ir~~~~~D~~~l~~l~~~~~~~~~---~~~~~~~~~~~~~-------~~~~i~~~~~~lvG~~~l~~~~~~--~-~~i 68 (152)
T PRK07757 2 MEIRKARLSDVKAIHALINVYAKKGL---MLPRSLDELYENI-------RDFYVAEEEGEIVGCCALHILWED--L-AEI 68 (152)
T ss_pred ceEeeCCcccHHHHHHHHHHHHhcCC---ccCCCHHHHHhcc-------CcEEEEEECCEEEEEEEEEeccCC--c-eEE
Confidence 67999999999999999864321111 1112333322222 124566669999999999765432 1 555
Q ss_pred -EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 100 -GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 100 -~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+++|+|++||+|+|++|+..+++++. +. ++..+.+.+. +.+||+|+||+.++..
T Consensus 69 ~~v~V~p~~rg~Glg~~Ll~~l~~~a~-~~-g~~~i~~~~~-----~~~~Y~k~GF~~~~~~ 123 (152)
T PRK07757 69 RSLAVSEDYRGQGIGRMLVEACLEEAR-EL-GVKRVFALTY-----QPEFFEKLGFREVDKE 123 (152)
T ss_pred EEEEECHHHcCCCHHHHHHHHHHHHHH-hC-CCCeEEEEeC-----cHHHHHHCCCEEcccc
Confidence 68899999999999999999999995 55 8998876553 4689999999998763
No 29
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=99.69 E-value=1.2e-15 Score=99.28 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=104.8
Q ss_pred CceEeecCCccCHHHHHHhhcCcceee----eccCCCCCCHHHHHHHHHhccCCC------------CcEEEEEECCeeE
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTH----FCSYGPYTSREQGIKHIENKVIPH------------PWFMAICVNNRAI 81 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~i~~~~~~v 81 (185)
+.+.++..+..|.+++.++..+..... ...+....+.+.+..|++...... ..+|.+..++++|
T Consensus 2 e~~~l~~p~L~~k~a~le~~~e~~~~~~~~~~~~~~~~~~~~~fed~L~~~~~~~~~~~~~~g~V~~~~y~~v~~d~~iv 81 (174)
T COG3981 2 EEMKLRRPTLKDKDAFLEMKKEFLTDGSTEAGAAWKADYEQEDFEDWLEDLTRQEPGNNLPEGWVPASTYWAVDEDGQIV 81 (174)
T ss_pred CcccccCCchhhHHHHHHHHHhhhhcCCcccCceeecccccccHHHHHHHHhccCCCcCCCCCceeceeEEEEecCCcEE
Confidence 356788889999999998775432111 111112222366666766533211 1344454489999
Q ss_pred EEEEEEecCCCCCc--eEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 82 GAISVSANQGNDKC--RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 82 G~~~~~~~~~~~~~--~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
|++.++..-...-. .+.||+.|.|+.||||+|+++++.+++.| +.. |++.|.+.|+.+|.+|++.-+++|-..+.+
T Consensus 82 G~i~lRh~Ln~~ll~~gGHIGY~VrPseR~KGYA~emLkl~L~~a-r~l-gi~~Vlvtcd~dN~ASrkvI~~NGGile~~ 159 (174)
T COG3981 82 GFINLRHQLNDFLLEEGGHIGYSVRPSERRKGYAKEMLKLALEKA-REL-GIKKVLVTCDKDNIASRKVIEANGGILENE 159 (174)
T ss_pred EEEEeeeecchHHHhcCCcccceeChhhhccCHHHHHHHHHHHHH-HHc-CCCeEEEEeCCCCchhhHHHHhcCCEEeEE
Confidence 99999987543211 27889999999999999999999999999 566 999999999999999999999999888777
Q ss_pred eee
Q 029943 160 LRK 162 (185)
Q Consensus 160 ~~~ 162 (185)
+..
T Consensus 160 ~~~ 162 (174)
T COG3981 160 FFG 162 (174)
T ss_pred Ecc
Confidence 643
No 30
>TIGR03103 trio_acet_GNAT GNAT-family acetyltransferase TIGR03103. Members of this protein family belong to the GNAT family of acetyltransferases. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and an asparagine synthetase family protein.
Probab=99.69 E-value=1.4e-15 Score=119.23 Aligned_cols=134 Identities=11% Similarity=0.094 Sum_probs=97.2
Q ss_pred cCceEeecC-CccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE--CCeeEEEEEEEecCC--
Q 029943 17 LSDISLRPM-DLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV--NNRAIGAISVSANQG-- 91 (185)
Q Consensus 17 ~~~~~ir~~-~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~vG~~~~~~~~~-- 91 (185)
...+.||++ +++|++.+.+++.... +.+ .+.+... .........++++.. +|++||++.+.....
T Consensus 80 ~~g~~IR~~~~~~D~~~I~~L~~~~~------~~p-~~~~~~~---~~~~~~~~~~~vA~~~~~g~IVG~~~~~~~~~~~ 149 (547)
T TIGR03103 80 PRGFTVRRLRGPADVDAINRLYAARG------MVP-VRVDFVL---DHRHSRAITYLVAEDEASGAIIGTVMGVDHRKAF 149 (547)
T ss_pred CCCcEEEeCCChhHHHHHHHHHHhcC------CCC-CCHHHHH---HHhcCCCceEEEEEECCCCeEEEEEEEEeccccc
Confidence 356999997 6899999999997532 111 1222222 222223345555554 689999997643211
Q ss_pred --CCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeee
Q 029943 92 --NDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 92 --~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~ 162 (185)
.........++|+|+|||+|+|++|+..+++++ +.. |+..+.+.|..+|.+|++||+|+||+.++.+..
T Consensus 150 ~d~~~~~~i~~l~V~P~~Rg~GIG~~Ll~~l~e~a-~~~-G~~~i~L~V~~~N~~Ai~fY~klGf~~~~~y~~ 220 (547)
T TIGR03103 150 NDPEHGSSLWCLAVDPQAAHPGVGEALVRALAEHF-QSR-GCAYMDLSVMHDNEQAIALYEKLGFRRIPVFAL 220 (547)
T ss_pred cCCCCCeEEEEEEECHHHcCCCHHHHHHHHHHHHH-HHC-CCCEEEEEEcCCCHHHHHHHHHCCCEEeeEEEE
Confidence 111113456889999999999999999999998 555 999999999999999999999999998887654
No 31
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.68 E-value=1.9e-15 Score=111.74 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=96.3
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-----CCeeEEEEEEEecCCC
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-----NNRAIGAISVSANQGN 92 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~vG~~~~~~~~~~ 92 (185)
..++||+++++|++.+.++.+... .|.......+.+++..++... ..+++.. ++.+||++.+.....
T Consensus 185 m~~~Ir~a~~~Dl~ri~~L~~~tn--qfn~~~~~~s~~~i~~~l~~~-----~~~~~~~~d~~gd~givG~~~~~~~~~- 256 (320)
T TIGR01686 185 LSLNISKNDEQNVQRVEELLGRTN--QFNATYTRLNQEDVAQHMQKE-----EIVTVSMSDRFGDSGIIGIFVFEKKEG- 256 (320)
T ss_pred CEEEEEECChhhhHHHHHHHHhHH--hhhccCccCCHHHHHHHhcCC-----CEEEEEEEecCCCCceEEEEEEEecCC-
Confidence 458899999999999999986432 221122344677777776542 2443332 567999998865432
Q ss_pred CCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec--cChhhHHHHHHcCCcee
Q 029943 93 DKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV--ENVGSQKVLLKAGFMQE 157 (185)
Q Consensus 93 ~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~--~N~~a~~~y~k~Gf~~~ 157 (185)
. .....++|+|.+||+|+|+.|+..+++.|.+ . |+..+.+.+.+ .|.+|++||+++||+..
T Consensus 257 -~-~~I~~l~vs~r~~grGig~~Ll~~l~~~a~~-~-G~~~i~l~v~~~~~N~~A~~fY~~~GF~~~ 319 (320)
T TIGR01686 257 -N-LFIDDLCMSCRALGRGVETRMLRWLFEQALD-L-GNHNARLYYRRTERNMPFLSFYEQIGFEDE 319 (320)
T ss_pred -c-EEEEEEEEcHhHhcCcHHHHHHHHHHHHHHH-c-CCCeEEEEEeeCCCchHHHHHHHHcCCccC
Confidence 1 1344788999999999999999999999954 5 99999998864 79999999999999864
No 32
>COG0456 RimI Acetyltransferases [General function prediction only]
Probab=99.67 E-value=3.4e-15 Score=101.44 Aligned_cols=140 Identities=15% Similarity=0.174 Sum_probs=98.4
Q ss_pred cCceEeecCCccCHH--HHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEEC---C----eeEEEEEEE
Q 029943 17 LSDISLRPMDLSDVD--DFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVN---N----RAIGAISVS 87 (185)
Q Consensus 17 ~~~~~ir~~~~~D~~--~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~----~~vG~~~~~ 87 (185)
...+.+|++...|.. .+..+........ ...+...+...+.+. ....++...+ + .++|++...
T Consensus 9 ~~~~~ir~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~---~~~~~v~~~~~~~~~~~~~~~G~~~~~ 80 (177)
T COG0456 9 EDKVTIREAINKDLLDVALAALEARTFDIR-----LPWSREYFEKDLTQA---PELLLVAETGGLDGLLDGKVVGFLLVR 80 (177)
T ss_pred ccceehhhhhhcccchHHHHHHhhhcCCCC-----CcchHHHHHHHHhhC---cceeEEEEecccCCCcccceeEEEEEE
Confidence 356889999999998 6666655332111 222444444444443 2233333332 2 599999997
Q ss_pred ecCCCCC---ceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCc-cEEEEEeeccChhhHHHHHHcCCceeeeeeee
Q 029943 88 ANQGNDK---CRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHL-ERLEALVDVENVGSQKVLLKAGFMQEGVLRKY 163 (185)
Q Consensus 88 ~~~~~~~---~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~-~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 163 (185)
....... ......+.|+|+|||+|+|++|+..+++.+.+. +. ..+.+.|..+|.+|++||+|+||+..+....+
T Consensus 81 ~~~~~~~~~~~~~i~~iaV~p~~r~~Gig~~Ll~~~~~~~~~~--~~~~~~~L~V~~~N~~Ai~lY~~~GF~~~~~~~~y 158 (177)
T COG0456 81 VVDGRPSADHEGHIYNLAVDPEYRGRGIGRALLDEALERLRER--GLADKIVLEVRESNEAAIGLYRKLGFEVVKIRKNY 158 (177)
T ss_pred EecCCccccCccEEEEEEEChHhhcCCHHHHHHHHHHHHHHhc--CCCceEEEEEecCChHHHHHHHHcCCEEEeeehhh
Confidence 4433211 114446779999999999999999999998555 65 89999999999999999999999999998766
Q ss_pred eec
Q 029943 164 FIH 166 (185)
Q Consensus 164 ~~~ 166 (185)
+..
T Consensus 159 y~~ 161 (177)
T COG0456 159 YAD 161 (177)
T ss_pred ccC
Confidence 543
No 33
>PHA00673 acetyltransferase domain containing protein
Probab=99.66 E-value=9e-15 Score=95.35 Aligned_cols=130 Identities=9% Similarity=0.021 Sum_probs=89.3
Q ss_pred CCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCC-CCcEEEEEECCeeEEEEEEEecCCCCC---ceEEE-
Q 029943 25 MDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIP-HPWFMAICVNNRAIGAISVSANQGNDK---CRGEI- 99 (185)
Q Consensus 25 ~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~vG~~~~~~~~~~~~---~~~~~- 99 (185)
++.+|++.|..|+.+......-+. .... ......++....+ +...+++..+|++||++.+...+.... ..+.+
T Consensus 12 A~~~D~paI~~LLadd~l~~~r~d-~~~~-~~y~~af~ai~~dp~~~llVa~~~g~vVG~~~l~~~p~l~~~~~~~~~Ie 89 (154)
T PHA00673 12 AELADAPTFASLCAEYAHESANAD-LAGR-APDHHAYAGMEAAGVAHFLGVFRGEELVGFACLLVTPVPHFKGQLIGTTE 89 (154)
T ss_pred ccHhhHHHHHHHHHhccccccccc-cccc-chhHHHHHHHHhCCCcEEEEEEECCEEEEEEEEEEecCCccCCccEEEEE
Confidence 678999999999987322111111 1111 1122224444333 334555556999999999987764322 12445
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
.++|+|++||+|+|++|+++++++|.+. |+..++....|+ ...+.||.+.|++.+.+
T Consensus 90 ~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~--Gc~~lyis~~p~-~~tv~fy~~~g~~~~~~ 146 (154)
T PHA00673 90 SIFVAAAHRPGGAGMALLRATEALARDL--GATGLYVSGPTE-GRLVQLLPAAGYRETNR 146 (154)
T ss_pred EEEEChhccCCCHHHHHHHHHHHHHHHC--CCCEEEEecCCC-ccchHHHHhCCchhhch
Confidence 5679999999999999999999999555 999999986554 56899999999998653
No 34
>PRK07922 N-acetylglutamate synthase; Validated
Probab=99.66 E-value=2.4e-15 Score=101.36 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=87.6
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEE-ECCeeEEEEEEEecCCCCCce
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAIC-VNNRAIGAISVSANQGNDKCR 96 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~vG~~~~~~~~~~~~~~ 96 (185)
+.+.+|+++++|.+.+.++...-.... . ...+....++.. ....+++. .+|++||++.+..... + .
T Consensus 4 ~~i~iR~a~~~D~~~i~~L~~~~~~~~-----~-~~~~~~~~~~~~----~~~~~va~~~~~~iiG~~~~~~~~~-~--~ 70 (169)
T PRK07922 4 GAITVRRARTSDVPAIKRLVDPYAQGR-----I-LLEKNLVTLYEA----VQEFWVAEHLDGEVVGCGALHVMWE-D--L 70 (169)
T ss_pred CCceeecCCHhhHHHHHHHHHHHhhcC-----c-cccchHHHHHhh----cCcEEEEEecCCcEEEEEEEeecCC-C--c
Confidence 568999999999999999875311100 0 011112223332 23355666 6889999998876432 1 2
Q ss_pred EEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 97 GEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 97 ~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+++. ++|+|++||+|+|++|++.++++|++ . |+.++.+.+. +++||+|+||+..+.
T Consensus 71 ~~i~~l~V~p~~rgkGiG~~Ll~~~~~~a~~-~-g~~~l~~~~~-----~~~fY~k~GF~~~~~ 127 (169)
T PRK07922 71 AEIRTVAVDPAARGRGVGHAIVERLLDVARE-L-GLSRVFVLTF-----EVEFFARHGFVEIDG 127 (169)
T ss_pred eEEEEEEECHHHhCCCHHHHHHHHHHHHHHH-c-CCCEEEEEec-----cHHHHHHCCCEECcc
Confidence 6674 77999999999999999999999964 5 9999987664 378999999998764
No 35
>PHA01807 hypothetical protein
Probab=99.64 E-value=7.8e-15 Score=96.61 Aligned_cols=126 Identities=7% Similarity=-0.003 Sum_probs=86.6
Q ss_pred cCCccCHHHHHHhhcCcceeeeccCCCCCC-HHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEE--
Q 029943 24 PMDLSDVDDFMVWASDDKVTHFCSYGPYTS-REQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIG-- 100 (185)
Q Consensus 24 ~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~-- 100 (185)
.++.+|+..+..+.... ...+....++.+ ++....+...........+++..+|++||++.+......... ..++
T Consensus 8 ~~~~~d~~~~~~l~l~~-l~e~p~~~~w~s~ee~~~~~~~~~~~~~~~~lva~~dg~lvG~~~l~~~~~~~~~-~i~~l~ 85 (153)
T PHA01807 8 HAKAGTPSELQGLCWLA-IQELEEFTLFRSKEEALERILDSTESNDRTELLVFRDGKLAGIAVLVFEDDPHVG-PCLGVQ 85 (153)
T ss_pred hhhhCCHHHHHHHHHHH-HHhCccCCCCCChHHHHHHHHHHhhCCCceEEEEEECCEEEEEEEEEcCCCccee-eeccce
Confidence 35677888888776432 112211111223 333345554444444455666669999999998766533221 2223
Q ss_pred -EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcC
Q 029943 101 -YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAG 153 (185)
Q Consensus 101 -~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~G 153 (185)
++|+|+|||+|+|+.|++.++++| +.. |+..+.+.+...|.+|++||++..
T Consensus 86 ~lYV~pe~RG~GiG~~Ll~~~~~~A-r~~-G~~~l~l~v~~~n~~a~~~y~~~~ 137 (153)
T PHA01807 86 WQYVLPEYRNAGVAREFLRELIRLA-GEG-NLPLIAFSHREGEGRYTIHYRRVK 137 (153)
T ss_pred eEEECHHHcCCCHHHHHHHHHHHHH-HHC-CCCEEEEEecCCcHHHHHHHHhcC
Confidence 589999999999999999999999 455 999999999999999999999863
No 36
>KOG4135 consensus Predicted phosphoglucosamine acetyltransferase [Carbohydrate transport and metabolism]
Probab=99.64 E-value=1.1e-14 Score=91.99 Aligned_cols=143 Identities=16% Similarity=0.245 Sum_probs=111.2
Q ss_pred cccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC-cEEEEEE-----C-----CeeEEE
Q 029943 15 GELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP-WFMAICV-----N-----NRAIGA 83 (185)
Q Consensus 15 ~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~-----~-----~~~vG~ 83 (185)
+-..++.+.|.++.+.+...+|+.+.+..+.....+. +.++-.+.-..|..+.. ..|++.+ . ...||-
T Consensus 9 i~~~kvILVPYe~~HV~kYHeWMknEelr~LT~SE~L-tLdeEyeMQ~sW~~DeDKlTFIVLdaE~~ea~~~ev~~MvGD 87 (185)
T KOG4135|consen 9 ILGKKVILVPYEPCHVPKYHEWMKNEELRRLTASEPL-TLDEEYEMQKSWREDEDKLTFIVLDAEMNEAGEDEVDHMVGD 87 (185)
T ss_pred EecceEEEeeccccchhHHHhHhhhHHHHHhhcCCCc-chhHHHHhhhhhccCCcceEEEEEechhcccCchhHhhhccc
Confidence 3456899999999999999999999888887765555 55555555555554433 5555553 1 237888
Q ss_pred EEEEecCCCC-------CceEEEEEEEC-cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCc
Q 029943 84 ISVSANQGND-------KCRGEIGYVLG-SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155 (185)
Q Consensus 84 ~~~~~~~~~~-------~~~~~~~~~v~-~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~ 155 (185)
+.+......+ ...+++.+.|+ |.-||+|+|++++.+++.|+...+ ++.+..+.+..+|.+++++|+|++|.
T Consensus 88 vNlFlt~~~~~~n~s~~~~~gE~EvMIAEP~~RgKG~G~eav~~ml~y~~s~l-~l~Ky~vkig~~nk~sl~lFkk~~f~ 166 (185)
T KOG4135|consen 88 VNLFLTTSPDTENPSDDVITGEVEVMIAEPRGRGKGIGTEAVRAMLAYAYSVL-KLDKYEVKIGMDNKPSLRLFKKFLFT 166 (185)
T ss_pred eeeEEecCCCcCCcccceeeeeEEEEEecccccCCCccHHHHHHHHHHHHHHh-hhheEEEEecCCCchHHHHHHHhhhe
Confidence 8776654333 12377778875 999999999999999999998888 99999999999999999999999998
Q ss_pred eeee
Q 029943 156 QEGV 159 (185)
Q Consensus 156 ~~~~ 159 (185)
....
T Consensus 167 q~~~ 170 (185)
T KOG4135|consen 167 QVFY 170 (185)
T ss_pred eeee
Confidence 8664
No 37
>PLN02825 amino-acid N-acetyltransferase
Probab=99.63 E-value=3.9e-15 Score=114.78 Aligned_cols=134 Identities=11% Similarity=0.097 Sum_probs=97.9
Q ss_pred ccccCccccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEe
Q 029943 9 TIKEGDGELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSA 88 (185)
Q Consensus 9 ~~~~~~~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~ 88 (185)
.++||+....--.||+++++|++.|.+++........ ....+.+.... .. ..++++..+|++||++.+.+
T Consensus 357 g~gt~i~~~~~e~IR~At~eDi~~I~~Li~~lee~g~---lv~rs~e~le~----ei---~~f~V~e~Dg~IVG~aal~~ 426 (515)
T PLN02825 357 GMGTMIASDMYEGTRMARVEDLAGIRQIIRPLEESGI---LVRRTDEELLR----AL---DSFVVVEREGSIIACAALFP 426 (515)
T ss_pred CceeEeccChHhhheeCCHHHHHHHHHHHHHHHHcCC---CcCCCHHHHHh----cC---CcEEEEEECCEEEEEEEEEe
Confidence 3456666666678999999999999999864221111 11123333222 22 23566667999999999887
Q ss_pred cCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 89 NQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 89 ~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
...... ++++ ++|+|+|||+|+|++|++.+++.|. +. |++++.+.+ ..+.+||+++||...+..
T Consensus 427 ~~~~~~--aEI~~laV~P~yRGkGiG~~LL~~le~~Ar-~~-G~~~L~Llt----t~a~~fY~k~GF~~~~~~ 491 (515)
T PLN02825 427 FFEEKC--GEVAAIAVSPECRGQGQGDKLLDYIEKKAA-SL-GLEKLFLLT----TRTADWFVRRGFSECSIE 491 (515)
T ss_pred ecCCCc--EEEEEEEECHHHcCCCHHHHHHHHHHHHHH-HC-CCCEEEEEe----CcHHHHHHHCCCEEeChh
Confidence 643222 7774 7799999999999999999999995 45 999999876 347899999999998864
No 38
>KOG3396 consensus Glucosamine-phosphate N-acetyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.62 E-value=9.3e-15 Score=91.05 Aligned_cols=131 Identities=22% Similarity=0.281 Sum_probs=99.3
Q ss_pred ceEeecCCccCHHH-HHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEE-EEEE---CCeeEEEEEEEecCCCC
Q 029943 19 DISLRPMDLSDVDD-FMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFM-AICV---NNRAIGAISVSANQGND 93 (185)
Q Consensus 19 ~~~ir~~~~~D~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~---~~~~vG~~~~~~~~~~~ 93 (185)
.+.+||+..+|+.. +.+++++-. .....+.+++...+..+.....+++ ++.. .+++||.+.+......-
T Consensus 6 ~~~lR~L~~~D~~kGf~elL~qLT------~vG~vt~e~F~krf~~mk~~~~~Y~i~Vied~~s~~vigtatL~IE~KfI 79 (150)
T KOG3396|consen 6 GFKLRPLEEDDYGKGFIELLKQLT------SVGVVTREQFEKRFEAMKKSGDWYYIVVIEDKESEKVIGTATLFIERKFI 79 (150)
T ss_pred ceEEeecccccccchHHHHHHHHh------hccccCHHHHHHHHHHHHhcCCcEEEEEEEeCCcCeEEEEEEEEEehhhh
Confidence 48999999999986 777776421 2445578888888887776666333 3333 78999999998754332
Q ss_pred Cc---eEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 94 KC---RGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 94 ~~---~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+. .+.+ ...|++++||+++|+.++..+...+ +.+ |+-++.+.|.+.| ..||+|+||+..+..
T Consensus 80 h~~g~rGhiEDVVV~~~~rgk~LGkllv~~Lv~l~-k~l-gcYKi~LdC~~~n---v~FYeKcG~s~~~~~ 145 (150)
T KOG3396|consen 80 HGCGSRGHIEDVVVDSEYRGKQLGKLLVETLVDLA-KSL-GCYKIILDCDPKN---VKFYEKCGYSNAGNE 145 (150)
T ss_pred hcccccCceeEEEeChhhhhhHHhHHHHHHHHHHH-Hhc-CcEEEEEecchhh---hhHHHHcCccccchh
Confidence 11 1222 4669999999999999999999999 566 9999999999998 559999999987643
No 39
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=99.61 E-value=1.4e-14 Score=91.85 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=61.3
Q ss_pred HHhccCCC-CcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEee
Q 029943 61 IENKVIPH-PWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVD 139 (185)
Q Consensus 61 ~~~~~~~~-~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~ 139 (185)
+....... ...+++..++++||++.+.. . . ..-.++|.|++||+|+|++|+..+++.+ +. ++..+.+.
T Consensus 35 ~~~~~~~~~~~~~v~~~~~~ivG~~~~~~---~-~--~i~~l~v~p~~r~~Gig~~Ll~~~~~~~-~~--~~~~l~~~-- 103 (117)
T PF13673_consen 35 LEEYLEEGSHTIFVAEEGGEIVGFAWLEP---D-G--EISHLYVLPEYRGRGIGRALLDAAEKEA-KD--GIRRLTVE-- 103 (117)
T ss_dssp HHHHHCTCCCEEEEEEETTEEEEEEEEET---C-E--EEEEEEE-GGGTTSSHHHHHHHHHHHHH-TT--TCEEEEEE--
T ss_pred HHHHHHhcCCEEEEEEECCEEEEEEEEcC---C-C--eEEEEEEChhhcCCcHHHHHHHHHHHHH-Hc--CCcEEEEE--
Confidence 34444333 45677777999999999861 1 1 2224779999999999999999999988 54 77877776
Q ss_pred ccChhhHHHHHHcCC
Q 029943 140 VENVGSQKVLLKAGF 154 (185)
Q Consensus 140 ~~N~~a~~~y~k~Gf 154 (185)
.|..|++||+++||
T Consensus 104 -~~~~a~~~y~~~GF 117 (117)
T PF13673_consen 104 -ANERARRFYRKLGF 117 (117)
T ss_dssp -C-HHHHHHHHHTT-
T ss_pred -eCHHHHHHHHhCCC
Confidence 89999999999998
No 40
>PF13527 Acetyltransf_9: Acetyltransferase (GNAT) domain; PDB: 3SXN_C 2I00_D 1M4D_B 1M44_A 1M4G_B 1M4I_A 2OZG_A 2HV2_F 3N7Z_A 3RYO_B ....
Probab=99.60 E-value=2.1e-14 Score=92.42 Aligned_cols=121 Identities=12% Similarity=0.120 Sum_probs=80.3
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCC-ce---
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDK-CR--- 96 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~-~~--- 96 (185)
.||+++++|.+.+.++++... ....+..+...+...... ....+++.++|++||++.+.+..-... ..
T Consensus 1 ~iR~~~~~d~~~i~~l~~~~F-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ivg~~~~~~~~~~~~g~~~~~ 72 (127)
T PF13527_consen 1 EIRPLTESDFEQIIELFNEAF-------GDSESPPEIWEYFRNLYG-PGRCVVAEDDGKIVGHVGLIPRRLSVGGKKFKA 72 (127)
T ss_dssp -EEEE-GGGHHHHHHHHHHHT-------TT-CHHHHHHHHHHHHHH-TTEEEEEEETTEEEEEEEEEEEEEEETTEEEEE
T ss_pred CceECCHHHHHHHHHHHHHHC-------CCCCCchhhhhhhhcccC-cCcEEEEEECCEEEEEEEEEEEEEEECCEEEEE
Confidence 489999999999999987432 111111122233333333 235677777999999999987632111 11
Q ss_pred -EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCce
Q 029943 97 -GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQ 156 (185)
Q Consensus 97 -~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~ 156 (185)
...++.|+|+|||+|+|++|++.+++.+.++ |+..+.+.. .+.+||+++||+.
T Consensus 73 ~~i~~v~v~p~~R~~Gl~~~L~~~~~~~~~~~--g~~~~~l~~-----~~~~~Y~~~G~~~ 126 (127)
T PF13527_consen 73 AYIGDVAVDPEYRGRGLGRQLMRALLERARER--GVPFIFLFP-----SSPPFYRRFGFEY 126 (127)
T ss_dssp EEEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--T-SEEEEE------SSHHHHHHTTEEE
T ss_pred EEEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCCEEEEec-----CChhhhhcCCCEE
Confidence 2334559999999999999999999999555 888777755 2368999999976
No 41
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.59 E-value=1.7e-14 Score=110.68 Aligned_cols=132 Identities=16% Similarity=0.176 Sum_probs=91.5
Q ss_pred ccCccccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecC
Q 029943 11 KEGDGELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQ 90 (185)
Q Consensus 11 ~~~~~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~ 90 (185)
+|+....+-+.||+++++|++.+.++++......+ . ......+++... ..++++..+|++||++.+....
T Consensus 274 GT~i~~d~y~~IR~at~~Dl~~I~~L~~~~~~~~~---~----~~~~~~~l~~~~---~~~~V~~~dg~iVG~~~~~~~~ 343 (429)
T TIGR01890 274 GTSISKEAFESIRQATIDDIGGIAALIRPLEEQGI---L----VRRSREYLEREI---SEFSIIEHDGNIIGCAALYPYA 343 (429)
T ss_pred cceEeccchhheEECCHHHHHHHHHHHHHHHHcCC---c----hhhhHHHHHhhc---CcEEEEEECCEEEEEEEEEecC
Confidence 34333334447999999999999999753211111 1 112233333322 2345555699999999998764
Q ss_pred CCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 91 GNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 91 ~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
... .+++. ++|+|+|||+|+|++|++.++++|.+ . |+..+.+. ..| +.+||+++||+.++..
T Consensus 344 ~~~--~~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~A~~-~-G~~~l~v~--~~~--a~~fY~k~GF~~~g~~ 406 (429)
T TIGR01890 344 EED--CGEMACLAVSPEYQDGGRGERLLAHIEDRARQ-M-GISRLFVL--TTR--TGHWFRERGFQTASVD 406 (429)
T ss_pred CCC--eEEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEEEe--ecc--hHHHHHHCCCEECChh
Confidence 322 26664 67999999999999999999999955 4 89887643 344 5799999999999874
No 42
>TIGR03448 mycothiol_MshD mycothiol biosynthesis acetyltransferase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species.
Probab=99.57 E-value=8.7e-14 Score=101.90 Aligned_cols=128 Identities=11% Similarity=0.094 Sum_probs=88.5
Q ss_pred ecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEE
Q 029943 23 RPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYV 102 (185)
Q Consensus 23 r~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~ 102 (185)
.+++++|++++.++...... +.+ .+..+.+ ....+..........+++..++++||++.+........ ....++
T Consensus 4 ~~l~~~d~~~v~~L~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~~~~--~~~~l~ 77 (292)
T TIGR03448 4 AALDADLRRDVRELLAAATA--VDG-VAPVSEQ-VLRGLREPGAGHTRHLVAVDSDPIVGYANLVPARGTDP--AMAELV 77 (292)
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCC-CCCCCHH-HHhhccccCCCCceEEEEEECCEEEEEEEEEcCCCCcc--eEEEEE
Confidence 46788999999998874322 211 2223433 33333322222234555666899999999877643222 344678
Q ss_pred ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeee
Q 029943 103 LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 103 v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~ 162 (185)
|+|++||+|+|++|++.+++.+. ..+.+.+...|.+|++||+++||+..+....
T Consensus 78 V~p~~rg~GiG~~Ll~~~~~~~~------~~~~~~~~~~n~~a~~fy~~~Gf~~~~~~~~ 131 (292)
T TIGR03448 78 VHPAHRRRGIGRALIRALLAKGG------GRLRVWAHGDLPAARALASRLGLVPTRELLQ 131 (292)
T ss_pred ECHhhcCCCHHHHHHHHHHHhcc------CceEEEEcCCCHHHHHHHHHCCCEEccEEEE
Confidence 99999999999999999988751 3467778889999999999999998876443
No 43
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.56 E-value=3.4e-14 Score=109.40 Aligned_cols=131 Identities=21% Similarity=0.208 Sum_probs=91.9
Q ss_pred ccCccccCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecC
Q 029943 11 KEGDGELSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQ 90 (185)
Q Consensus 11 ~~~~~~~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~ 90 (185)
+|......-+.||+++++|++.+.+++.......+ ....+.+ .+.... ..++++..++++||++.+....
T Consensus 286 GT~i~~~~y~~IR~at~~D~~~I~~L~~~~~~~~~---~~~~~~~----~l~~~~---~~~~va~~dg~iVG~~~~~~~~ 355 (441)
T PRK05279 286 GTMIVMESLEQLRRATIDDVGGILELIRPLEEQGI---LVRRSRE----QLEREI---DKFTVIERDGLIIGCAALYPFP 355 (441)
T ss_pred ceEEecCchHHeEeCCHHHHHHHHHHHHHHHHcCC---ccccCHH----HHhccc---CcEEEEEECCEEEEEEEEEEcC
Confidence 34444444578999999999999998753111111 1111222 222222 2355666699999999887754
Q ss_pred CCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 91 GNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 91 ~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
.... +++ .++|+|+|||+|+|++|++.++++|.+ . |+..+.+. |..+++||+|+||+..+.
T Consensus 356 ~~~~--~~I~~l~V~p~~Rg~GiG~~Ll~~l~~~a~~-~-g~~~l~l~----~~~a~~fY~k~GF~~~g~ 417 (441)
T PRK05279 356 EEKM--GEMACLAVHPDYRGSGRGERLLKRIEQRARQ-L-GLKRLFVL----TTRTAHWFLERGFVPVDV 417 (441)
T ss_pred CCCe--EEEEEEEECHHHcCCCHHHHHHHHHHHHHHH-c-CCCEEEEe----cchHHHHHHHCcCEECCh
Confidence 3222 555 477999999999999999999999954 5 89988754 346899999999999986
No 44
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=99.56 E-value=9e-14 Score=89.51 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=89.5
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEE-
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEI- 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~- 99 (185)
.||.++.+|...|.++...-....- --..+.+.....+.+ ++++..+|.+||++.+.+...... +++
T Consensus 2 ~iR~A~~~Di~~I~~Li~~~~~~gi---l~~rs~~~le~~i~d-------F~i~E~~g~viGC~aL~~~~~~~~--gE~~ 69 (153)
T COG1246 2 QIRKARISDIPAILELIRPLELQGI---LLRRSREQLEEEIDD-------FTIIERDGKVIGCAALHPVLEEDL--GELR 69 (153)
T ss_pred ceeeccccchHHHHHHHHHHhhccc---cchhhHHHHHHHHhh-------heeeeeCCcEEEEEeecccCccCe--eeEE
Confidence 6899999999999999863221110 001123333333322 556777999999999997443333 777
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
++.|+|++||+|+|.+|+..++..| +.. |++++++-+. .+..||++.||+....
T Consensus 70 ~laV~pd~r~~G~G~~Ll~~~~~~A-r~~-gi~~lf~LTt----~~~~~F~~~GF~~vd~ 123 (153)
T COG1246 70 SLAVHPDYRGSGRGERLLERLLADA-REL-GIKELFVLTT----RSPEFFAERGFTRVDK 123 (153)
T ss_pred EEEECHHhcCCCcHHHHHHHHHHHH-HHc-CCceeeeeec----ccHHHHHHcCCeECcc
Confidence 5669999999999999999999999 555 9999998774 4789999999998775
No 45
>PF13508 Acetyltransf_7: Acetyltransferase (GNAT) domain; PDB: 3EY5_A 3FRM_B 3D8P_B 3GY9_A 3GYA_A 3S6F_A 2Q7B_A 1CM0_B 1XEB_B 1Y7R_A ....
Probab=99.55 E-value=1.8e-13 Score=80.73 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=58.2
Q ss_pred cEEEEEECCeeEEEEEEEecCCCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHH
Q 029943 70 WFMAICVNNRAIGAISVSANQGNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKV 148 (185)
Q Consensus 70 ~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~ 148 (185)
..+++..++++||++.+..... . ..+ .+.|+|++||+|+|+.|++.+.+.+ . ...+.+.+ |+.+.+|
T Consensus 4 ~~~~~~~~~~ivG~~~~~~~~~---~-~~i~~~~v~~~~rg~Gig~~ll~~~~~~~-~----~~~i~l~~---~~~~~~f 71 (79)
T PF13508_consen 4 RFFVAEDDGEIVGFIRLWPNED---F-AYIGYLAVDPEYRGKGIGSKLLNYLLEKA-K----SKKIFLFT---NPAAIKF 71 (79)
T ss_dssp EEEEEEETTEEEEEEEEEETTT---E-EEEEEEEE-GGGTTSSHHHHHHHHHHHHH-T----CSEEEEEE---EHHHHHH
T ss_pred EEEEEEECCEEEEEEEEEEcCC---E-EEEEEEEECHHHcCCCHHHHHHHHHHHHc-C----CCcEEEEE---cHHHHHH
Confidence 4566667999999999976654 2 444 5669999999999999999998877 2 23455554 5789999
Q ss_pred HHHcCCce
Q 029943 149 LLKAGFMQ 156 (185)
Q Consensus 149 y~k~Gf~~ 156 (185)
|+++||++
T Consensus 72 Y~~~GF~~ 79 (79)
T PF13508_consen 72 YEKLGFEE 79 (79)
T ss_dssp HHHTTEEE
T ss_pred HHHCcCCC
Confidence 99999974
No 46
>PRK10314 putative acyltransferase; Provisional
Probab=99.53 E-value=1.8e-13 Score=90.77 Aligned_cols=86 Identities=9% Similarity=0.097 Sum_probs=67.9
Q ss_pred CcEEEEEECCeeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHH
Q 029943 69 PWFMAICVNNRAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQK 147 (185)
Q Consensus 69 ~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
...+++..++++||++.+......... +.++ ++|+|+|||+|+|++|++.+++++.+.. +...+.+.+ |..+.+
T Consensus 48 ~~h~~~~~~~~~vg~~r~~~~~~~~~~-~~i~rv~V~~~~rG~GiG~~Lm~~~~~~~~~~~-~~~~i~L~a---~~~a~~ 122 (153)
T PRK10314 48 NRHILGWKNDELVAYARILKSDDDLEP-VVIGRVIVSEALRGEKVGQQLMSKTLESCTRHW-PDKPVYLGA---QAHLQN 122 (153)
T ss_pred cEEEEEEECCEEEEEEEEecCCCCCCC-EEEEEEEECHHHhCCCHHHHHHHHHHHHHHHHC-CCCcEEEeh---HHHHHH
Confidence 345555568999999999875432222 5564 6799999999999999999999986665 677787765 467899
Q ss_pred HHHHcCCceeee
Q 029943 148 VLLKAGFMQEGV 159 (185)
Q Consensus 148 ~y~k~Gf~~~~~ 159 (185)
||+|+||+..+.
T Consensus 123 fY~k~GF~~~g~ 134 (153)
T PRK10314 123 FYQSFGFIPVTE 134 (153)
T ss_pred HHHHCCCEECCC
Confidence 999999999885
No 47
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.52 E-value=1.1e-13 Score=110.45 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=87.9
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceE
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRG 97 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~ 97 (185)
..+.||+++++|++.+.++....... ......+.+. +. . ....++++..+|++||++.+...... .+
T Consensus 462 ~gm~IR~a~~~D~~~I~~L~~~~~~~---~~~~~~~~~~---l~-~---~~~~~~Va~~~g~IVG~~~l~~~~~~---~~ 528 (614)
T PRK12308 462 SGVKVRPARLTDIDAIEGMVAYWAGL---GENLPRSRNE---LV-R---DIGSFAVAEHHGEVTGCASLYIYDSG---LA 528 (614)
T ss_pred CCCEEEECCHHHHHHHHHHHHHHHhh---hcccccCHHH---Hh-c---ccCcEEEEEECCEEEEEEEEEEcCCC---eE
Confidence 45889999999999999987531110 0111112222 11 1 12245666669999999998765321 24
Q ss_pred EE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 98 EI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 98 ~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
++ .++|+|+|||+|+|+.|++.+++++. +. |+.++.+.+ .+.+||+|+||+.++...
T Consensus 529 ~I~~i~V~P~~rGkGIGk~Ll~~l~~~ak-~~-g~~~i~l~~-----~a~~FYek~GF~~~~~~~ 586 (614)
T PRK12308 529 EIRSLGVEAGWQVQGQGSALVQYLVEKAR-QM-AIKKVFVLT-----RVPEFFMKQGFSPTSKSL 586 (614)
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHH-HC-CCCEEEEee-----CcHHHHHHCCCEECCccc
Confidence 45 78899999999999999999999995 45 999988764 246999999999988653
No 48
>KOG3235 consensus Subunit of the major N alpha-acetyltransferase [General function prediction only]
Probab=99.49 E-value=7.8e-13 Score=84.75 Aligned_cols=135 Identities=14% Similarity=0.121 Sum_probs=100.0
Q ss_pred eEeecCCccCHHHHHH--hhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCCC--C
Q 029943 20 ISLRPMDLSDVDDFMV--WASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGND--K 94 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~~--~ 94 (185)
+.||+++++|+-.+.. +++.|+ --....|+--...-....+++.+ +|++||++.....+.+. .
T Consensus 2 m~iR~ar~~DL~~mQ~~Nl~~lpE------------Nyqmkyylyh~lswp~lSyVA~D~~gkiVGYvlAkmee~p~~~~ 69 (193)
T KOG3235|consen 2 MNIRRARPDDLLEMQHCNLLNLPE------------NYQMKYYLYHGLSWPQLSYVAEDENGKIVGYVLAKMEEDPDDEP 69 (193)
T ss_pred cccccCCHHHHHHhhhcccccCcH------------HHhHHHHHHhhcccccceEEEEcCCCcEEEEeeeehhhcccCCC
Confidence 5689999998766554 333222 11223344433333446667765 89999999987765221 1
Q ss_pred ce-EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHH-HcCCceeeeeeeeeecC
Q 029943 95 CR-GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLL-KAGFMQEGVLRKYFIHK 167 (185)
Q Consensus 95 ~~-~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~-k~Gf~~~~~~~~~~~~~ 167 (185)
.+ ..-++.|..+||+.|+|++|+.+..+...+.. +...|.++|...|.+|+.+|+ .+||........++..+
T Consensus 70 ~hGhItSlaV~rs~RrlGla~kLm~qa~rAm~E~~-~A~yvsLHVR~SNraAl~LY~~tl~F~v~eve~kYYadG 143 (193)
T KOG3235|consen 70 PHGHITSLAVKRSYRRLGLAQKLMNQASRAMVEVY-EAKYVSLHVRKSNRAALHLYKNTLGFVVCEVEPKYYADG 143 (193)
T ss_pred CCCeeEEeeehhhHHHhhHHHHHHHHHHHHHHHhh-cceEEEEeeecccHHHHHhhhhccceEEeeccccccccc
Confidence 12 34478899999999999999999998887888 999999999999999999999 99999999887776433
No 49
>COG3393 Predicted acetyltransferase [General function prediction only]
Probab=99.48 E-value=1.3e-12 Score=90.96 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=94.1
Q ss_pred cCceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCce
Q 029943 17 LSDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCR 96 (185)
Q Consensus 17 ~~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~ 96 (185)
+.++.+|.++..|.. +...+..+.+..+ .+..+.++.-........ ...+.+..+|++|..+......+. .
T Consensus 131 ~~~~~~r~a~~~D~~-i~~~~~~~~l~~~---g~~~~~~~~~~~~~a~g~--~~~~f~~~d~~iVa~A~t~a~~~~--~- 201 (268)
T COG3393 131 PEELDVRLAAAKDMF-IPEVGLRATLDDF---GRADSRKEAVAVLNALGR--SRTYFLEGDGKIVAKAETAAENPA--Y- 201 (268)
T ss_pred cccceeeeeeccccc-chheeeeeeeccc---ccCcchHHHHHHHHHhhc--eeEEEEccCCcEEEeeeccccCCc--c-
Confidence 467888888888875 4444443333222 333344333333333322 223334447799999988876543 2
Q ss_pred EEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 97 GEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 97 ~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
+.+ |.++.|+|||||+|+.++..+..-..++ | +.-.+.+..+|+.|++.|+|+||+..|+++.+.
T Consensus 202 ~~I~gV~T~peyR~kGyAt~lva~L~~~lL~e--G-k~~~L~~~~~N~~A~~iY~riGF~~~g~~~~~~ 267 (268)
T COG3393 202 AQINGVYTHPEYRGKGYATALVATLAAKLLAE--G-KIPCLFVNSDNPVARRIYQRIGFREIGEFREYI 267 (268)
T ss_pred eEEEEEEcCHHHccccHHHHHHHHHHHHHHhC--C-CeeEEEEecCCHHHHHHHHHhCCeecceEEEEe
Confidence 444 7889999999999999999999988777 4 345566779999999999999999999876653
No 50
>PRK01346 hypothetical protein; Provisional
Probab=99.45 E-value=5e-12 Score=96.84 Aligned_cols=131 Identities=9% Similarity=-0.015 Sum_probs=92.3
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCC---C-
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGN---D- 93 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~---~- 93 (185)
+.+.||+++++|++.+.++.+... . .. .+.+....+.... . ....+++..+|++||++.+...... .
T Consensus 5 ~~~~iR~~~~~D~~~i~~L~~~~f----~--~~-~~~~~~~~~~~~~-~-~~~~~va~~~~~lvg~~~~~~~~~~~~~~~ 75 (411)
T PRK01346 5 MAITIRTATEEDWPAWFRAAATGF----G--DS-PSDEELEAWRALV-E-PDRTLGAFDGDEVVGTAGAFDLRLTVPGGA 75 (411)
T ss_pred CCceeecCCHHHHHHHHHHHHHHc----C--CC-CChHHHHHHHHhc-C-cCCeEEEEECCEEEEEEEEeccccccCCCC
Confidence 458899999999999999976431 1 11 1344555554433 2 2345666678999999998754311 1
Q ss_pred --CceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 94 --KCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 94 --~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
......++.|+|+|||+|+|++|++.+++.+.+ . |+..+.+.+.. .+||+|.||........+.
T Consensus 76 ~~~~~~i~~v~V~P~~RgrGig~~Ll~~~l~~a~~-~-g~~~~~L~~~~-----~~~Y~r~Gf~~~~~~~~~~ 141 (411)
T PRK01346 76 VLPAAGVTAVTVAPTHRRRGLLTALMREQLRRIRE-R-GEPVAALTASE-----GGIYGRFGYGPATYSQSLS 141 (411)
T ss_pred ccceeEEEEEEEChhhcCCCHHHHHHHHHHHHHHH-C-CCcEEEEECCc-----hhhHhhCCCeeccceEEEE
Confidence 111445677999999999999999999999954 4 88777776433 3799999999888765443
No 51
>PF08445 FR47: FR47-like protein; InterPro: IPR013653 Proteins in this entry have a conserved region similar to the C-terminal region of the Drosophila melanogaster (Fruit fly) hypothetical protein FR47 (Q9VR51 from SWISSPROT). This protein has been found to consist of two N-acyltransferase-like domains swapped with the C-terminal strands. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 1SQH_A 3EC4_B.
Probab=99.43 E-value=1.2e-11 Score=73.90 Aligned_cols=60 Identities=17% Similarity=0.121 Sum_probs=49.2
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
..-++.+.|++||+|+|+.++..+.+.+.+. |.. ..+.+..+|.+|+++|+|+||+....
T Consensus 23 ~i~~v~t~p~~RrrGlg~~lv~~l~~~~~~~--g~~-~~l~v~~~N~~s~~ly~klGf~~~~~ 82 (86)
T PF08445_consen 23 EIGGVYTLPEHRRRGLGSALVAALARELLER--GKT-PFLYVDADNEASIRLYEKLGFREIEE 82 (86)
T ss_dssp CEEEEEE-GGGTTSSHHHHHHHHHHHHHHHT--TSE-EEEEEETT-HHHHHHHHHCT-EEEEE
T ss_pred EEEEEEECHHHcCCCHHHHHHHHHHHHHHhC--CCc-EEEEEECCCHHHHHHHHHcCCEEEEE
Confidence 3336779999999999999999999998665 654 67889999999999999999998864
No 52
>KOG3138 consensus Predicted N-acetyltransferase [General function prediction only]
Probab=99.37 E-value=2.4e-12 Score=86.33 Aligned_cols=148 Identities=16% Similarity=0.151 Sum_probs=105.3
Q ss_pred ceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCC----
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDK---- 94 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~---- 94 (185)
.+.+++.++.+...+..+..+-....+ . .+|++.........-.+..++..+|...+........
T Consensus 16 ~~~l~~it~~nl~~~~~l~~~~fP~~y--------~---~kfy~~~~~~~~~~~~A~~~~~~v~a~~~k~~~~~~~~~r~ 84 (187)
T KOG3138|consen 16 LIELRLITPNNLKQLKQLNEDIFPISY--------V---DKFYPDVLSNGDLTQLAYYNEIAVGAVACKLIKFVQNAKRL 84 (187)
T ss_pred ceeeccCCcchHHHHHHHhccccCcch--------H---HHHHHHHHhcCCHHHhhhhccccccceeeeehhhhhhhhhh
Confidence 499999999999999988764321111 1 1266665554443333333666666666665543321
Q ss_pred ----ceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeE
Q 029943 95 ----CRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKT 170 (185)
Q Consensus 95 ----~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~ 170 (185)
......+.|.+.||.+|+|+.++..+.+++.+.. .++.+++++...|..++.||++.||+..+....++...+..
T Consensus 85 ~~~~~~yi~~Lgvl~~yR~~gIGs~Ll~~~~~~~~~~~-~~~~v~lHv~~~n~~ai~~Y~~~gF~~~~~~~~~y~~~~~~ 163 (187)
T KOG3138|consen 85 FGNRVIYILSLGVLPRYRNKGIGSKLLEFVKKYCSEAH-QCRRVYLHVQAVNESAIEFYEKRGFEIVERLKNYYSILGPP 163 (187)
T ss_pred hccceeEEEeecccHHHHhcchHHHHHHHHHHHHhccc-ccceEEEEEEeCCCcHHHHHHhcCceEeeccccccccccCc
Confidence 0134466699999999999999999999995553 48999999999999999999999999999988887666554
Q ss_pred EEEEEEee
Q 029943 171 RDTIMFSL 178 (185)
Q Consensus 171 ~d~~~~~~ 178 (185)
-+...+..
T Consensus 164 ~~~~l~~~ 171 (187)
T KOG3138|consen 164 DDSFLRKL 171 (187)
T ss_pred chhhhhhh
Confidence 44444433
No 53
>KOG2488 consensus Acetyltransferase (GNAT) domain-containing protein [General function prediction only]
Probab=99.35 E-value=6.9e-12 Score=82.96 Aligned_cols=84 Identities=15% Similarity=0.135 Sum_probs=68.6
Q ss_pred CeeEEEEEEEecCCCCCc-eEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCce
Q 029943 78 NRAIGAISVSANQGNDKC-RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQ 156 (185)
Q Consensus 78 ~~~vG~~~~~~~~~~~~~-~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~ 156 (185)
+.+|||..+......... .....+-|+++|||+|||+-|++.+...+ ... ..+.|.+.|...|.+|++||.++||..
T Consensus 102 ~~~vgf~~Frf~vd~g~~vlYcyEvqv~~~yR~kGiGk~LL~~l~~~a-~~~-~~~kVmLTVf~~N~~al~Fy~~~gf~~ 179 (202)
T KOG2488|consen 102 SKLVGFTMFRFTVDTGDPVLYCYEVQVASAYRGKGIGKFLLDTLEKLA-DSR-HMRKVMLTVFSENIRALGFYHRLGFVV 179 (202)
T ss_pred CceeeEEEEEEEcccCCeEEEEEEEeehhhhhccChHHHHHHHHHHHH-HHH-HhhhheeeeecccchhHHHHHHcCccc
Confidence 389999999887544321 12223448999999999999999999998 454 889999999999999999999999998
Q ss_pred eeeeeee
Q 029943 157 EGVLRKY 163 (185)
Q Consensus 157 ~~~~~~~ 163 (185)
....+..
T Consensus 180 ~~~sp~~ 186 (202)
T KOG2488|consen 180 DEESPCD 186 (202)
T ss_pred CCCCCcc
Confidence 7776553
No 54
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=99.34 E-value=4e-11 Score=88.51 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=77.0
Q ss_pred CHHHHHHHHHhcc-C---CCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhC
Q 029943 53 SREQGIKHIENKV-I---PHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEW 128 (185)
Q Consensus 53 ~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~ 128 (185)
..+++.+++.... . +....+++..+|++||++++... ..-.++|+|++||+|+|++|+..+++++.+.
T Consensus 11 ~~~~v~~fL~~~~l~~d~~~d~~vv~~~~~~lVg~g~l~g~-------~ik~vaV~~~~rG~Glg~~L~~~L~~~a~~~- 82 (332)
T TIGR00124 11 KACGIKNFLHQNELSLDAPLEIFIAVYEDEEIIGCGGIAGN-------VIKCVAIDESLRGEGLALQLMTELENLAYEL- 82 (332)
T ss_pred HHHHHHHHHHhcCCcccCCCCEEEEEEECCEEEEEEEEecC-------EEEEEEEcHHHcCCCHHHHHHHHHHHHHHHc-
Confidence 4556777877552 2 22355556669999999998431 3346789999999999999999999999555
Q ss_pred CCccEEEEEeeccChhhHHHHHHcCCceeeeeeee
Q 029943 129 PHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKY 163 (185)
Q Consensus 129 ~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 163 (185)
|+..+.+.+.+.| .+||+++||...+.....
T Consensus 83 -G~~~l~l~Tk~~~---~~fy~klGF~~i~~~~~~ 113 (332)
T TIGR00124 83 -GRFHLFIFTKPEY---AALFEYCGFKTLAEAKDQ 113 (332)
T ss_pred -CCCEEEEEECchH---HHHHHHcCCEEeeeecce
Confidence 9999999997765 579999999999987643
No 55
>cd02169 Citrate_lyase_ligase Citrate lyase ligase. Citrate lyase ligase, also known as [Citrate (pro-3S)-lyase] ligase, is responsible for acetylation of the (2-(5''-phosphoribosyl)-3'-dephosphocoenzyme-A) prosthetic group of the gamma subunit of citrate lyase, converting the inactive thiol form of this enzyme to the active form. The acetylation of 1 molecule of deacetyl-citrate lyase to enzymatically active citrate lyase requires 6 molecules of ATP. The Adenylylyltranferase activity of the enzyme involves the formation of AMP and and pyrophosphate in the acetylation reaction.
Probab=99.34 E-value=1.8e-11 Score=88.95 Aligned_cols=78 Identities=19% Similarity=0.148 Sum_probs=63.1
Q ss_pred EEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHH
Q 029943 71 FMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLL 150 (185)
Q Consensus 71 ~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~ 150 (185)
.++...+|++||++.+... ..-.++|+|+|||+|+|++|++.+++++. +. |+..+.+.+...| .+||+
T Consensus 8 ~~v~~~~~~iVG~~~l~~~-------~I~~vaV~p~~Rg~GiG~~Ll~~l~~~a~-~~-g~~~i~L~t~~~~---~~fYe 75 (297)
T cd02169 8 VGIFDDAGELIATGSIAGN-------VLKCVAVCPKYQGEGLALKIVSELINKAY-EE-GIFHLFLFTKPKN---AKFFR 75 (297)
T ss_pred EEEEEECCEEEEEEEeccC-------EEEEEEECHHHcCCCHHHHHHHHHHHHHH-HC-CCCEEEEEEcccH---HHHHH
Confidence 3444457999999988531 33468899999999999999999999994 45 9999999886654 68999
Q ss_pred HcCCceeeee
Q 029943 151 KAGFMQEGVL 160 (185)
Q Consensus 151 k~Gf~~~~~~ 160 (185)
|+||+..+..
T Consensus 76 k~GF~~~~~~ 85 (297)
T cd02169 76 GLGFKELANA 85 (297)
T ss_pred HCCCEEeccc
Confidence 9999998833
No 56
>KOG3234 consensus Acetyltransferase, (GNAT) family [General function prediction only]
Probab=99.27 E-value=6.9e-11 Score=75.84 Aligned_cols=133 Identities=15% Similarity=0.167 Sum_probs=92.8
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCCCCceEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
++||++.+|+-.+-.+--|+....| ...-...++..+.. .+.++.. +|++.|++.-.........++.+
T Consensus 3 t~r~f~~~Dlf~fNninLDpltEt~-------~~~Fyl~yl~~~pe---~~~~a~~p~~~imgyimgk~Eg~~~~wh~Hv 72 (173)
T KOG3234|consen 3 TIRPFTPQDLFKFNNINLDPLTETF-------PISFYLIYLAIWPE---DFIVAEAPTGEIMGYIMGKVEGKDTEWHGHV 72 (173)
T ss_pred ccccccHHHHHhhcccccccccccc-------ceehhHHHHHhChH---HhEeccCCCCceEEEEeeeccccCcceeeEE
Confidence 5788888887655444434322222 11222334444432 2333333 78899999886655443322444
Q ss_pred -EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeee
Q 029943 100 -GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFI 165 (185)
Q Consensus 100 -~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~ 165 (185)
++.|+|+||+.|+|+.++..+.+-. +.. +.--+.+.|...|+-|+.+|+++||..-...-.++.
T Consensus 73 TAltVap~~Rrl~la~~lm~~led~~-d~~-~a~fvDLfVr~sN~iAI~mYkkLGY~~YR~Vi~YY~ 137 (173)
T KOG3234|consen 73 TALTVAPDYRRLGLAAKLMDTLEDVS-DVD-NAYFVDLFVRVSNQIAIDMYKKLGYSVYRTVIEYYS 137 (173)
T ss_pred EEEEechhHHHHHHHHHHHHHHHHHH-Hhh-hhheeeeeeeccchhHHHHHHhcCceEEEeeeeeec
Confidence 5669999999999999999999987 554 678899999999999999999999999888877765
No 57
>COG3153 Predicted acetyltransferase [General function prediction only]
Probab=99.25 E-value=2.9e-10 Score=75.58 Aligned_cols=130 Identities=13% Similarity=0.122 Sum_probs=93.0
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC-cEEEEEECCeeEEEEEEEecCCCCCce
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP-WFMAICVNNRAIGAISVSANQGNDKCR 96 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~vG~~~~~~~~~~~~~~ 96 (185)
..+.||..++.|++.+.++...... ..........++....... ..++..++|++||.+.+++..-.....
T Consensus 2 ~~~~ir~e~~~d~~~i~~~~~~aF~--------~~~e~~~v~~lR~~~~~~~~LslVA~d~g~vvG~Il~s~v~~~g~~~ 73 (171)
T COG3153 2 MMMLIRTETPADIPAIEALTREAFG--------PGREAKLVDKLREGGRPDLTLSLVAEDDGEVVGHILFSPVTVGGEEL 73 (171)
T ss_pred CccEEEecChhhHHHHHHHHHHHhh--------cchHHHHHHHHHhcCCcccceeEEEeeCCEEEEEEEEeEEEecCccc
Confidence 3578999999999999998654321 1244455556665543333 555666699999999999987652211
Q ss_pred --EEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeee
Q 029943 97 --GEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKY 163 (185)
Q Consensus 97 --~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 163 (185)
..++ +.|+|++||||||++|+...++.+ +.. |...+.+-=+ -.+|.+.||+......-.
T Consensus 74 ~~~~LaPLaV~p~~qg~GIG~~Lvr~~le~a-~~~-G~~~v~vlGd------p~YY~rfGF~~~~~~~l~ 135 (171)
T COG3153 74 GWLGLAPLAVDPEYQGQGIGSALVREGLEAL-RLA-GASAVVVLGD------PTYYSRFGFEPAAGAKLY 135 (171)
T ss_pred ceEEEEeEEEchhhcCCcHHHHHHHHHHHHH-HHC-CCCEEEEecC------cccccccCcEEccccccc
Confidence 2222 449999999999999999999999 444 8887766432 359999999998876443
No 58
>PRK13688 hypothetical protein; Provisional
Probab=99.21 E-value=4.2e-10 Score=74.62 Aligned_cols=81 Identities=21% Similarity=0.264 Sum_probs=55.6
Q ss_pred cEEEEEECCeeEEEEEEEecCC-------CCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 70 WFMAICVNNRAIGAISVSANQG-------NDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 70 ~~~~i~~~~~~vG~~~~~~~~~-------~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
.++++..++++||++.+...+. .....+++ .++|+|+|||+|+|++|++.+. + . ++. + .+...
T Consensus 46 ~~~~~~~~~~~VG~~~l~~~dg~~~~~~~~~~~~~~L~~l~V~p~~rgkGiG~~Ll~~a~----~-~-~~~-~--~~~~~ 116 (156)
T PRK13688 46 PFYGIYYGDSLVARMSLYKKGGVEEPYFEDTQDYLELWKLEVLPKYQNRGYGEMLVDFAK----S-F-QLP-I--KTIAR 116 (156)
T ss_pred CEEEEEECCEEEEEEEEEecCCcccccccCCCCeEEEEEEEECHHHcCCCHHHHHHHHHH----H-h-CCe-E--EEEec
Confidence 4566667899999988754321 11112444 5779999999999999987432 2 2 443 3 33445
Q ss_pred ChhhHHHHHHcCCceeeee
Q 029943 142 NVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 142 N~~a~~~y~k~Gf~~~~~~ 160 (185)
| .+++||+|+||+..+..
T Consensus 117 ~-~a~~FY~k~GF~~~~~~ 134 (156)
T PRK13688 117 N-KSKDFWLKLGFTPVEYK 134 (156)
T ss_pred c-chHHHHHhCCCEEeEEe
Confidence 5 47899999999999876
No 59
>PF12746 GNAT_acetyltran: GNAT acetyltransferase; PDB: 3G3S_B.
Probab=99.20 E-value=3.2e-09 Score=75.78 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=80.2
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEE-EEEecCCCCCce
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAI-SVSANQGNDKCR 96 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~-~~~~~~~~~~~~ 96 (185)
+.+.|++++++.++.... +.....+. ..+.+ .+.|+++ +..+++..+|++|..+ +.......
T Consensus 127 ~~y~l~~Ide~l~~~~~~---e~~s~d~~--~~~~s---~e~Fl~~-----G~Gf~i~~~~~iVs~~~s~~~~~~~---- 189 (265)
T PF12746_consen 127 EGYELKRIDEELYENSLE---EEWSEDLV--SQFSS---YEDFLKN-----GFGFCILHDGEIVSGCSSYFVYENG---- 189 (265)
T ss_dssp TTCEEEE--HHHHHHHHH---SCCCGGGT--TTSSS---HHHHHHH-------EEEEEETTEEEEEEEEEEEETTE----
T ss_pred CCeEEEECCHHHHHhhhh---hHhHHHHH--HhcCC---HHHHHhc-----CcEEEEEECCEEEEEEEEEEEECCE----
Confidence 467888888776665542 11111121 12223 3345544 3577888888887544 44444322
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeee
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFI 165 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~ 165 (185)
.++++...|+|||||+|+.+...++..+.++ |+.-. ..+ .|.+|+++-+|+||+....+.-+..
T Consensus 190 ~EI~I~T~~~yR~kGLA~~~aa~~I~~Cl~~--~l~P~-WDc--~N~~S~~lA~kLGf~~~~~Y~~Y~v 253 (265)
T PF12746_consen 190 IEIDIETHPEYRGKGLATAVAAAFILECLEN--GLYPS-WDC--HNLASIALAEKLGFHFDFEYTAYEV 253 (265)
T ss_dssp EEEEEEE-CCCTTSSHHHHHHHHHHHHHHHT--T-EEE--EE--SSHHHHHHHHHCT--EEEEEEEE--
T ss_pred EEEEEEECHHhhcCCHHHHHHHHHHHHHHHC--CCCcC-eeC--CCHHHHHHHHHcCCcccceeeeeee
Confidence 8999999999999999999999999999777 54432 223 6999999999999999998877654
No 60
>KOG3397 consensus Acetyltransferases [General function prediction only]
Probab=99.19 E-value=7.8e-10 Score=72.21 Aligned_cols=133 Identities=11% Similarity=0.120 Sum_probs=90.0
Q ss_pred CccccCceEeecCC--ccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE--CCeeEEEEEEEe
Q 029943 13 GDGELSDISLRPMD--LSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV--NNRAIGAISVSA 88 (185)
Q Consensus 13 ~~~~~~~~~ir~~~--~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~vG~~~~~~ 88 (185)
+......+.+.|+- ++-.++-+.+.++. |.. +...-..-+.+..+.-+...++.. ..++||...+.+
T Consensus 6 papS~~~l~~vPiH~rPELlk~~~~LIN~e-------WPR--S~TsR~hSL~~ScDs~P~sL~Ll~E~~~~VigH~rLS~ 76 (225)
T KOG3397|consen 6 PAPSMPDLFFVPLHDRPELLKESMTLINSE-------WPR--SDTSREHSLKKSCDSPPMSLLLLNEENDEVLGHSRLSH 76 (225)
T ss_pred CCCCCCcceeEeccccHHHHHHHHHHHhcc-------CCc--cchhhhhhhhcccCCCCeeeeeecccccceeeeecccc
Confidence 33344567777763 33455555666643 211 222223334444443444444444 568999999999
Q ss_pred cCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 89 NQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 89 ~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
....+..-..-+..|+.++||+|+|+.+++.++.|+... |++++++.+... .+||+++||+...-.
T Consensus 77 i~n~~~al~VEsVVV~k~~RG~GFGk~lMk~~E~~~R~~--gf~~~yLsT~DQ----~~FYe~lGYe~c~Pi 142 (225)
T KOG3397|consen 77 LPNRDHALWVESVVVKKDQRGLGFGKFLMKSTEKWMREK--GFNEAYLSTDDQ----CRFYESLGYEKCDPI 142 (225)
T ss_pred CCCCCceeEEEEEEEehhhccccHHHHHHHHHHHHHHHh--hhhheeeecccc----hhhhhhhcccccCce
Confidence 876655323336779999999999999999999999555 899999998775 689999999987644
No 61
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=99.02 E-value=1e-09 Score=64.51 Aligned_cols=72 Identities=17% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCeeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCc
Q 029943 77 NNRAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~ 155 (185)
+|++|.++..... ++++.. ..|+|||||+.+.++....+++ .+. |+. ++.+|..+|+.++++.+++||.
T Consensus 7 eG~PVSW~lmdqt-------ge~rmgyTlPeyR~~G~~~~v~~~~~~~L-~~~-g~P-~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 7 EGNPVSWSLMDQT-------GEMRMGYTLPEYRGQGLMSQVMYHLAQYL-HKL-GFP-FYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred CCCEeEEEEeccc-------ccccccccCHhHhcCCHHHHHHHHHHHHH-HHC-CCC-eEeehHhccHHHHHHHHHCCCe
Confidence 7888888766554 666555 7899999999999999999998 555 887 8999999999999999999998
Q ss_pred eee
Q 029943 156 QEG 158 (185)
Q Consensus 156 ~~~ 158 (185)
...
T Consensus 77 ~~p 79 (89)
T PF08444_consen 77 FMP 79 (89)
T ss_pred ecC
Confidence 643
No 62
>TIGR01211 ELP3 histone acetyltransferase, ELP3 family. The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.
Probab=98.98 E-value=7.7e-09 Score=80.71 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=62.4
Q ss_pred CCeeEEEEEEEecCCCC--------CceEEEEEE---------ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEee
Q 029943 77 NNRAIGAISVSANQGND--------KCRGEIGYV---------LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVD 139 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~--------~~~~~~~~~---------v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~ 139 (185)
++.+||++.+....... ....++.++ .+++|||+|+|++|++.++++|.+. |+..|.+.
T Consensus 422 ~~~l~G~lrlr~~~~~~~~~~~~~~a~IrelhV~G~~~~~~~~~~~~~rg~GiG~~Ll~~ae~~Ar~~--G~~~i~v~-- 497 (522)
T TIGR01211 422 NDILIGFLRLRFPSEPAHRKEVDATALVRELHVYGSEVPIGERGDDEWQHRGYGRRLLEEAERIAAEE--GSEKILVI-- 497 (522)
T ss_pred CCeEEEEEEEecCcccccccccCCCceEEEEEEeeeeccccccCChhHhCcCHHHHHHHHHHHHHHHC--CCCEEEEe--
Confidence 56899999998765321 001344444 4689999999999999999999554 99999863
Q ss_pred ccChhhHHHHHHcCCceeeeee
Q 029943 140 VENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 140 ~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.|..|++||+|+||...|..-
T Consensus 498 -s~~~A~~FY~klGf~~~g~ym 518 (522)
T TIGR01211 498 -SGIGVREYYRKLGYELDGPYM 518 (522)
T ss_pred -eCchHHHHHHHCCCEEEccee
Confidence 488999999999999888653
No 63
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=98.95 E-value=1.4e-08 Score=64.64 Aligned_cols=85 Identities=14% Similarity=0.191 Sum_probs=66.8
Q ss_pred cEEEEEE-CCeeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHH
Q 029943 70 WFMAICV-NNRAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQK 147 (185)
Q Consensus 70 ~~~~i~~-~~~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
..+.... +|++++++-+.+....... ..|| ..|+|++||+|+|.+|+..+++.+.+.+| -+.+.+..- ...+.
T Consensus 50 ~Hl~~~~~~g~LvAyaRLl~~~~~~~~-~~iGRV~v~~~~RG~glG~~Lm~~AL~~~~~~~p-~~~v~l~AQ---ahLq~ 124 (155)
T COG2153 50 RHLLGWTPDGELVAYARLLPPGAEYEE-VSIGRVIVSPAARGQGLGQQLMEKALETAGREWP-DKPVYLGAQ---AHLQD 124 (155)
T ss_pred ceEEEEcCCCeEEEEEecCCCCCCcCc-eeeeeEEECHhhhccchhHHHHHHHHHHHHhhCC-CCCeEEehH---HHHHH
Confidence 3445555 9999999999887654433 5565 44899999999999999999999988884 455666543 35899
Q ss_pred HHHHcCCceeee
Q 029943 148 VLLKAGFMQEGV 159 (185)
Q Consensus 148 ~y~k~Gf~~~~~ 159 (185)
||.+.||+..+.
T Consensus 125 fYa~~GFv~~~e 136 (155)
T COG2153 125 FYASFGFVRVGE 136 (155)
T ss_pred HHHHhCcEEcCc
Confidence 999999999885
No 64
>cd04301 NAT_SF N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransfera
Probab=98.95 E-value=1.2e-08 Score=56.70 Aligned_cols=61 Identities=21% Similarity=0.295 Sum_probs=50.1
Q ss_pred EEEECCeeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEE
Q 029943 73 AICVNNRAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEA 136 (185)
Q Consensus 73 ~i~~~~~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~ 136 (185)
++..+++++|++.+......... +.++ +.++|++||+|+|++++..+++++++ . +++.+.+
T Consensus 3 ~~~~~~~~ig~~~~~~~~~~~~~-~~l~~~~v~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~v~~ 64 (65)
T cd04301 3 VAEDDGEIVGFASLSPDGSGGDT-AYIGDLAVLPEYRGKGIGSALLEAAEEEARE-R-GAKRLRL 64 (65)
T ss_pred EEecCCEEEEEEEEEecCCCCcc-EEEEEEEECHHHcCcCHHHHHHHHHHHHHHH-c-CCcEEEe
Confidence 44558899999999997653333 7776 78999999999999999999999966 4 8888765
No 65
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=98.69 E-value=9.1e-07 Score=51.63 Aligned_cols=71 Identities=15% Similarity=0.100 Sum_probs=50.2
Q ss_pred EEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHH
Q 029943 72 MAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLK 151 (185)
Q Consensus 72 ~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k 151 (185)
|.+..+|+.+|++.+... ........-.|.|++||||+|+.|++.++++|.++ |.+ +.+.-+-+.+++++
T Consensus 2 F~~~~~g~~~a~l~Y~~~---~~~~~i~hT~V~~~~rGqGia~~L~~~~l~~a~~~--~~k-----v~p~C~y~~~~~~~ 71 (78)
T PF14542_consen 2 FELKDDGEEIAELTYRED---GGVIVITHTEVPPELRGQGIAKKLVEAALDYAREN--GLK-----VVPTCSYVAKYFRR 71 (78)
T ss_dssp EEEESSTTEEEEEEEEES---SSEEEEEEEEE-CSSSTTTHHHHHHHHHHHHHHHT--T-E-----EEETSHHHHHHHHH
T ss_pred EEEEECCEEEEEEEEEeC---CCEEEEEEEEECccccCCcHHHHHHHHHHHHHHHC--CCE-----EEEECHHHHHHHHh
Confidence 445557889999999772 22213335669999999999999999999999655 644 44555667777776
Q ss_pred c
Q 029943 152 A 152 (185)
Q Consensus 152 ~ 152 (185)
+
T Consensus 72 h 72 (78)
T PF14542_consen 72 H 72 (78)
T ss_dssp -
T ss_pred C
Confidence 5
No 66
>PF12568 DUF3749: Acetyltransferase (GNAT) domain; InterPro: IPR024612 This domain is found in uncharacterised proteins from Gammaproteobacteria, and is approximately 40 amino acids in length. It contains two completely conserved residues (D and I) that may be functionally important. Proteins having this domain are frequently annotated as acetyltransferases of the GNAT family; however there is little accompanying annotation to confirm this.; PDB: 2K5T_A.
Probab=98.68 E-value=3.5e-07 Score=57.40 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=57.1
Q ss_pred CCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec----
Q 029943 66 IPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV---- 140 (185)
Q Consensus 66 ~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~---- 140 (185)
......|+..-|++++|.+.+...... +.++ +.|.+.-|++|+|+.|++.+.+.+ |+++.+.+....
T Consensus 35 ~~~~~l~aArFNdRlLgAv~v~~~~~~----~~L~~l~VRevTRrRGVG~yLlee~~rq~----p~i~~w~l~~~~~~~~ 106 (128)
T PF12568_consen 35 DEGHRLFAARFNDRLLGAVKVTISGQQ----AELSDLCVREVTRRRGVGLYLLEEVLRQL----PDIKHWWLADEGVEPQ 106 (128)
T ss_dssp -SSEEEEEEEETTEEEEEEEEEEETTE----EEEEEEEE-TT-SSSSHHHHHHHHHHHHS-----S--EEEE--TT-S--
T ss_pred ccCCeEEEEEechheeeeEEEEEcCcc----eEEeeEEEeeccccccHHHHHHHHHHHHC----CCCcEEEEecCCCccc
Confidence 434456666669999999999987542 6664 559999999999999998888865 377777775543
Q ss_pred cChhhHHHHHHcCCcee
Q 029943 141 ENVGSQKVLLKAGFMQE 157 (185)
Q Consensus 141 ~N~~a~~~y~k~Gf~~~ 157 (185)
+-....+|.+.+||...
T Consensus 107 ~~~~~~~Fm~a~GF~~~ 123 (128)
T PF12568_consen 107 DRAVMAAFMQACGFSAQ 123 (128)
T ss_dssp THHHHHHHHHHHT-EE-
T ss_pred chHHHHHHHHHcCcccc
Confidence 23567799999999654
No 67
>PF13718 GNAT_acetyltr_2: GNAT acetyltransferase 2; PDB: 2ZPA_B.
Probab=98.59 E-value=4.9e-06 Score=56.82 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=70.5
Q ss_pred CHHHHHHHHHhccCCCCcEEEEEECC--eeEEEEEEEecCCC-------------------------------C----Cc
Q 029943 53 SREQGIKHIENKVIPHPWFMAICVNN--RAIGAISVSANQGN-------------------------------D----KC 95 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~--~~vG~~~~~~~~~~-------------------------------~----~~ 95 (185)
++.+....+.. +....|++..++ .++|.+.+...... . ..
T Consensus 14 sPnDL~~LlDa---P~h~l~~l~~~~~p~il~~~~v~~EG~l~~~l~~~i~~g~rRp~G~LiP~~L~~~~~~~~f~~l~g 90 (196)
T PF13718_consen 14 SPNDLQLLLDA---PNHRLFVLLQPGDPDILGVAQVALEGGLSKELIEAILSGGRRPKGHLIPQTLAQHFGDPEFAQLSG 90 (196)
T ss_dssp -HHHHHHHHH----TTEEEEEEE-SS--SEEEEEEEEEEE---HHHHHHHHTTS---SS-HHHHHHHHHSS-TTGGGSEE
T ss_pred CHHHHHHHhcC---CcceeehhccCCCceEEEEEEEEecCCCCHHHHHHHHhCCCCCCCCCHHHHHHHHhCCHHHHhhcc
Confidence 56666555544 234566666677 99999988754332 0 00
Q ss_pred eEEEEEEECcCccCcCHHHHHHHHHHHHHH------------------------hhCCCccEEEEEeeccChhhHHHHHH
Q 029943 96 RGEIGYVLGSKYWGKGIATRAVKMASDAIF------------------------AEWPHLERLEALVDVENVGSQKVLLK 151 (185)
Q Consensus 96 ~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~------------------------~~~~~~~~i~~~~~~~N~~a~~~y~k 151 (185)
.-.+.+.|+|++|++|+|+++++.+.+++. ... +++.+.+. +--++.-.+||+|
T Consensus 91 ~RIvRIAvhP~~q~~G~Gs~lL~~l~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~vDylGtS-FG~t~~Ll~FW~k 168 (196)
T PF13718_consen 91 ARIVRIAVHPDLQRMGYGSRLLQQLEQYAEGKIPSLSEQDKEKLPPLLSKLSDRRPP-GVDYLGTS-FGATPELLKFWQK 168 (196)
T ss_dssp EEEEEEEE-CCC-SSSHHHHHHHHHHHT------------------------------S-SEEEEE-EE--HHHHHHHHC
T ss_pred eeEEEEEEChhhhcCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccc-CCCEEEec-cCCCHHHHHHHHH
Confidence 034467799999999999999999999982 122 67766554 3446788999999
Q ss_pred cCCceeeeeeeeeecCCeEEEEEEEe
Q 029943 152 AGFMQEGVLRKYFIHKGKTRDTIMFS 177 (185)
Q Consensus 152 ~Gf~~~~~~~~~~~~~g~~~d~~~~~ 177 (185)
+||..+..-...-...|.+.-+++..
T Consensus 169 ~gf~pv~l~~~~n~~SGe~S~imlr~ 194 (196)
T PF13718_consen 169 NGFVPVYLGQTRNEASGEHSAIMLRP 194 (196)
T ss_dssp TT-EEEEE-SS--TTT---EEEEEEE
T ss_pred CCcEEEEEecCcccccCceeeeEEee
Confidence 99999887655555677776665543
No 68
>COG5628 Predicted acetyltransferase [General function prediction only]
Probab=98.51 E-value=1.9e-06 Score=53.08 Aligned_cols=92 Identities=9% Similarity=-0.047 Sum_probs=65.2
Q ss_pred HHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCce--EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccE
Q 029943 56 QGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCR--GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLER 133 (185)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~--~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~ 133 (185)
-...+++.- ....|.+..+|.+||++.+-.....+... +.-.++|-..|||+|+|+++.+++-..+. | .
T Consensus 27 gl~~~w~~~---~~~~~~~~~~~~~igf~l~L~~~~~~~~iD~~~~efFIi~k~~~~GvGR~aaK~If~~~~----g--~ 97 (143)
T COG5628 27 GLETYWRDP---VREAWLFRIGGLPVGFALVLDLAHSPTPIDRAVAEFFIVRKHRRRGVGRAAAKAIFGSAW----G--V 97 (143)
T ss_pred chhhhhcCc---ccceeEEEECCceeeeeeeecccCCCCcccccchheEeeehhhccchhHHHHHHHHHHhh----c--e
Confidence 344555543 33466677799999999987765443221 22247799999999999999988877542 3 3
Q ss_pred EEEEeeccChhhHHHHHHcCCce
Q 029943 134 LEALVDVENVGSQKVLLKAGFMQ 156 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~k~Gf~~ 156 (185)
...-+.++|.+|++|+++.-.+.
T Consensus 98 w~Va~i~EN~PA~~fwK~~~~t~ 120 (143)
T COG5628 98 WQVATVRENTPARAFWKRVAETY 120 (143)
T ss_pred EEEEEeccCChhHHHHHhhhccc
Confidence 44567899999999999987653
No 69
>KOG4144 consensus Arylalkylamine N-acetyltransferase [General function prediction only]
Probab=98.42 E-value=1.3e-07 Score=60.83 Aligned_cols=136 Identities=12% Similarity=-0.017 Sum_probs=83.7
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCc------EEEEEECCeeEEEEEEEecCC
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPW------FMAICVNNRAIGAISVSANQG 91 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~vG~~~~~~~~~ 91 (185)
..+.|||..++|.+.+..+-+. .| +.....+.+-....+.+...-... .+.-+..+.+||++.-...+.
T Consensus 10 ~~~~irp~i~e~~q~~~~Lea~----~F-Pe~erasfeii~~r~i~~pevc~glf~~~~h~~~~~~~tLIghIigs~~~~ 84 (190)
T KOG4144|consen 10 EAPRIRPGIPESCQRRHTLEAS----EF-PEDERASFEIIRERFISVPEVCPGLFDEIRHFLTLCEGTLIGHIIGSLWDK 84 (190)
T ss_pred ccccCCCCChHHHHHHhccccc----cC-ChhHHHHHHHHHHHHhcchhhcchhhhhHHhhhhhccccceehhhcccCcc
Confidence 5788999999998888777432 22 111111222222222222221111 112222789999998776654
Q ss_pred CC------------Cce-EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceee
Q 029943 92 ND------------KCR-GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 92 ~~------------~~~-~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
.. ... +.-++.|.|+||.+|+|+.|+..-++..-.+- -.+++.+-+ ..+-+.||++.||+..|
T Consensus 85 E~lt~ESm~kh~s~g~ni~iHsl~Ihpa~rk~g~a~~Ll~~ylq~l~~q~-i~~r~~Li~---h~pLvPFYEr~gFk~vg 160 (190)
T KOG4144|consen 85 ERLTQESMTKHRSGGHNIHIHSLAIHPAFRKQGRAPILLWRYLQHLGSQP-IVRRAALIC---HDPLVPFYERFGFKAVG 160 (190)
T ss_pred hhhhHHHHhhhhcCCcceeEEEEEecHHHHhcCcchhHHHHHHHHhhcCc-cccceeeee---cCCccchhHhcCceeec
Confidence 31 111 22245589999999999999998777764553 455665544 44688999999999999
Q ss_pred eeee
Q 029943 159 VLRK 162 (185)
Q Consensus 159 ~~~~ 162 (185)
....
T Consensus 161 p~~~ 164 (190)
T KOG4144|consen 161 PCAI 164 (190)
T ss_pred cccc
Confidence 7543
No 70
>COG3818 Predicted acetyltransferase, GNAT superfamily [General function prediction only]
Probab=98.41 E-value=2.6e-06 Score=53.35 Aligned_cols=128 Identities=13% Similarity=0.071 Sum_probs=82.0
Q ss_pred ceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEE----ecCCCCC
Q 029943 19 DISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVS----ANQGNDK 94 (185)
Q Consensus 19 ~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~----~~~~~~~ 94 (185)
.+.++.....|..++..+-+.... . -.+...+....++.+- |+...+|.+.|+..-. ..+.++.
T Consensus 7 p~~~~D~~apd~aavLaLNNeha~-e----lswLe~erL~~l~~eA-------F~ArR~G~l~afl~tFd~~a~ydSpNF 74 (167)
T COG3818 7 PILIRDVRAPDLAAVLALNNEHAL-E----LSWLELERLYRLYKEA-------FVARRDGNLAAFLVTFDSSARYDSPNF 74 (167)
T ss_pred ceehhhhcCCchhhHHhccchhhh-h----ccccCHHHHHHHHHHH-------HHHhhccchhhheeeccccccCCCCce
Confidence 456677777788888887654322 1 1222445554444442 2233344444443332 2222211
Q ss_pred ---------ceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEe--eccChhhHHHHHHcCCceeeee
Q 029943 95 ---------CRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALV--DVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 95 ---------~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~--~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
....-.+.|+...||+|+|+++-+-+.++| +.. |...+.++| ++.|++|..|...+||+++|.-
T Consensus 75 lWFrErYe~F~YvDRvVVA~~aRGrG~aRalY~Dlf~~A-e~a-gy~~~tCEVn~DppnpasdaFHaalGF~eVG~a 149 (167)
T COG3818 75 LWFRERYENFFYVDRVVVASRARGRGVARALYADLFSYA-ELA-GYPYLTCEVNLDPPNPASDAFHAALGFHEVGQA 149 (167)
T ss_pred eehhhhCCceEEEEEEEEEecccccchHHHHHHHHHHHH-Hhc-CCceEEEEecCCCCChHHHHHhhhcCceEccce
Confidence 002223457899999999999999999999 555 889888877 5679999999999999999964
No 71
>COG3053 CitC Citrate lyase synthetase [Energy production and conversion]
Probab=98.21 E-value=5.1e-05 Score=54.36 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=66.3
Q ss_pred EEEEEE-CCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHH
Q 029943 71 FMAICV-NNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVL 149 (185)
Q Consensus 71 ~~~i~~-~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y 149 (185)
..++.. ++++|+++++.-. ..--+.|++.+||-|++-+++..+++++.+. |...+.+.+.+. ..++|
T Consensus 38 ~v~~~~~~~~iiacGsiaGn-------vikcvAvs~s~qGeGl~lkl~TeLin~ay~~--g~~hLFiyTKp~---~~~lF 105 (352)
T COG3053 38 FVAIYRDNEEIIACGSIAGN-------VIKCVAVSESLQGEGLALKLVTELINLAYER--GRTHLFIYTKPE---YAALF 105 (352)
T ss_pred EEEEEcCCCcEEEecccccc-------eeEEEEechhcccccHHHHHHHHHHHHHHHc--CCceEEEEechh---HHHHH
Confidence 334444 5899999887654 3334679999999999999999999999665 899999999877 57799
Q ss_pred HHcCCceeeeeeee
Q 029943 150 LKAGFMQEGVLRKY 163 (185)
Q Consensus 150 ~k~Gf~~~~~~~~~ 163 (185)
+.+||..+.....+
T Consensus 106 k~~GF~~i~~~~~~ 119 (352)
T COG3053 106 KQCGFSEIASAENV 119 (352)
T ss_pred HhCCceEeeccCce
Confidence 99999998887666
No 72
>PF11039 DUF2824: Protein of unknown function (DUF2824); InterPro: IPR022568 This family of proteins has no known function. Members of the family are found in P22-like viruses and bacteria. Some of the phage members have been annotated as head assembly proteins, but this has not been confirmed.
Probab=98.14 E-value=7.6e-05 Score=46.84 Aligned_cols=107 Identities=12% Similarity=0.169 Sum_probs=89.1
Q ss_pred CCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhH
Q 029943 67 PHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQ 146 (185)
Q Consensus 67 ~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~ 146 (185)
++..++.+...+.++|+..+....+. ..++.-.-+|++|| ++.+.-....+|..+.. .+..+...+...-...+
T Consensus 36 ~~~~Y~gVyeg~~l~Gi~~v~~i~~~---~vecHa~y~P~fRG--~a~~~~~~F~kwlL~Ns-~f~~vit~vp~kt~~Gr 109 (151)
T PF11039_consen 36 PDQLYLGVYEGGQLGGIVYVEEIQPS---VVECHAMYDPGFRG--YALEIGRLFCKWLLENS-PFQNVITFVPDKTRYGR 109 (151)
T ss_pred CccEEEEEEeceEEEEEEEEEEEeee---eEEEEeeeccccch--hHHHHHHHHHHHHhcCC-ceeEEEEecccccccch
Confidence 34566777778999999999887643 37777788999998 99999999999998888 89999988888888888
Q ss_pred HHHHHcCCceeeeeeeeeecCCeEEEEEEEeeccCC
Q 029943 147 KVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTD 182 (185)
Q Consensus 147 ~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~~ 182 (185)
-..+-+|.+.+|..++++. +. .|+..|.+++++
T Consensus 110 vic~llg~~RVG~id~~~~-g~--~~vTlYq~tRee 142 (151)
T PF11039_consen 110 VICRLLGARRVGHIDDYFK-GV--DGVTLYQLTREE 142 (151)
T ss_pred hHhhhhCCceeeeHHHHhc-CC--CceEEEEccHHH
Confidence 8999999999999998663 32 289999998865
No 73
>COG2388 Predicted acetyltransferase [General function prediction only]
Probab=98.06 E-value=2e-05 Score=47.75 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=46.2
Q ss_pred CCcEEEEEECCeeEEEEEEEecCCCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCcc
Q 029943 68 HPWFMAICVNNRAIGAISVSANQGNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLE 132 (185)
Q Consensus 68 ~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~ 132 (185)
....+++..+|..+|.+......+.. ..+ .-.|.+++||||+|++|+..+++.|.+. |..
T Consensus 14 ~~~~y~~~~~G~~~~e~~y~~~~~~~---i~i~HT~V~d~lrGqGia~~L~~~al~~ar~~--g~k 74 (99)
T COG2388 14 ENGRYVLTDEGEVIGEATYYDRGENL---IIIDHTYVPDELRGQGIAQKLVEKALEEAREA--GLK 74 (99)
T ss_pred CceEEEEecCCcEEEEEEEecCCCCE---EEEecCcCCHHHcCCcHHHHHHHHHHHHHHHc--CCe
Confidence 34566666689999999998876431 333 3448999999999999999999999555 654
No 74
>PRK10456 arginine succinyltransferase; Provisional
Probab=98.00 E-value=0.00011 Score=54.28 Aligned_cols=97 Identities=14% Similarity=0.172 Sum_probs=58.8
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHh-------cc--CCCCcEEEEEE--CCeeEEEEEEEe
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIEN-------KV--IPHPWFMAICV--NNRAIGAISVSA 88 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~i~~--~~~~vG~~~~~~ 88 (185)
+.|||++.+|+++|.++...+.. .+..... +.+...+.++. .. .+..+.|++++ .|++||++++..
T Consensus 2 ~vvRpv~~~Dl~aL~~LA~~sG~-G~TsLP~--d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a 78 (344)
T PRK10456 2 MVIRPVERSDLAALMQLAGKTGG-GLTSLPA--NEATLAARIERALKTWQGELPKSEQGYVFVLEDSETGTVAGICAIEV 78 (344)
T ss_pred eEEecCccccHHHHHHHHHHcCC-CcccCCC--CHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 68999999999999999865432 1211111 33333332221 11 22336677776 689999999764
Q ss_pred cCCC----------------------------------CCceEEEEEEECcCccCcCHHHHHHHH
Q 029943 89 NQGN----------------------------------DKCRGEIGYVLGSKYWGKGIATRAVKM 119 (185)
Q Consensus 89 ~~~~----------------------------------~~~~~~~~~~v~~~~rg~G~g~~ll~~ 119 (185)
..-. ....-..+++++|+||+.|.|+-|-+.
T Consensus 79 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfl~p~~R~~~~G~LLSr~ 143 (344)
T PRK10456 79 AVGLNDPWYNYRVGTLVHASKELNVYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKS 143 (344)
T ss_pred cccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCceeEEEEECHHHcCCCchhHHHHH
Confidence 2110 111123368899999999998865543
No 75
>PF04958 AstA: Arginine N-succinyltransferase beta subunit; InterPro: IPR007041 Arginine N-succinyltransferase catalyses the transfer of succinyl-CoA to arginine to produce succinylarginine. This is the first step in arginine catabolism via the arginine succinyltransferase pathway. Six major L-arginine-degrading pathways have been described for prokaryotes []. Many bacteria arginine succinyltransferase 2.3.1.109 from EC, which is the AstA protein of the succinyltransferase (ast) pathway operon consists of five genes. In a few species, such as Pseudomonas aeruginosa, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST). This entry represents the family of proteins that make up the beta subunit of the heterodimer of Ast and AOST.; GO: 0008791 arginine N-succinyltransferase activity, 0006527 arginine catabolic process; PDB: 1YLE_A.
Probab=97.96 E-value=6.2e-05 Score=55.72 Aligned_cols=101 Identities=23% Similarity=0.343 Sum_probs=54.9
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHH-------hcc----CCCCcEEEEEE--CCeeEEEEEE
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIE-------NKV----IPHPWFMAICV--NNRAIGAISV 86 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~----~~~~~~~~i~~--~~~~vG~~~~ 86 (185)
+.|||++.+|+++|.++...... .+... | .+.+...+.++ ... .+..+.|++++ +|++||++.+
T Consensus 2 ~viRp~~~~Dl~aL~~LA~~sg~-G~TsL-P-~d~~~L~~rI~~S~~sFa~~~~~~~~~~~YlfVLED~~tg~vvGts~I 78 (342)
T PF04958_consen 2 LVIRPARPSDLDALYALARESGP-GFTSL-P-PDREALAERIERSERSFAGRDVDFPGDEGYLFVLEDTETGEVVGTSAI 78 (342)
T ss_dssp EEEEE--GGGHHHHHHHHHHS-T-T-TTS---S-HHHHHHHHHHHHHHHH-TT----S--EEEEEEEETTT--EEEEEEE
T ss_pred eEEecCchhhHHHHHHHHHHcCC-CcccC-C-CCHHHHHHHHHHHHHHhhccccCCCCccceEEEEEecCCCcEEEEEeE
Confidence 68999999999999999764321 11111 1 13333332222 111 12236677776 7999999997
Q ss_pred EecCCC----------------------------------CCceEEE-EEEECcCccCcCHHHHHHHHHHHHH
Q 029943 87 SANQGN----------------------------------DKCRGEI-GYVLGSKYWGKGIATRAVKMASDAI 124 (185)
Q Consensus 87 ~~~~~~----------------------------------~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a 124 (185)
....-. ..+ .++ +++++|+||+.|.|+-|-+.-.-++
T Consensus 79 ~a~vG~~~PfY~yr~~~~vh~S~~L~v~~~~~~L~L~~d~tG~-sEl~tLfL~p~~R~~~~G~lLSr~RfLFi 150 (342)
T PF04958_consen 79 EAAVGLDEPFYSYRVSTLVHASRELGVRNRHETLTLSNDYTGC-SELCTLFLDPDYRGGGNGRLLSRSRFLFI 150 (342)
T ss_dssp ESSTTSSS---EEEEEEEEEEETTTTEEEEEEEEEEE-TTTTS-EEEEEEEE-GGGTTSHHHHHHHHHHHHHH
T ss_pred EeccCCCCCcEEEEcCceeEcCcccCCccceeeEeeecCCCCC-eeeEEEEECHHHcCCchHHHHHHHHHHHH
Confidence 642211 111 344 6889999999999987665544443
No 76
>COG4552 Eis Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only]
Probab=97.90 E-value=6.2e-05 Score=55.32 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=63.4
Q ss_pred CCcEEEEEECCeeEEEEEEEecCCCCCc-----eEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccC
Q 029943 68 HPWFMAICVNNRAIGAISVSANQGNDKC-----RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVEN 142 (185)
Q Consensus 68 ~~~~~~i~~~~~~vG~~~~~~~~~~~~~-----~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N 142 (185)
.....++..+.++++.....+..-.... .+..++.++|+|||+|..++|+...++...++ |+....++
T Consensus 38 ~~n~~vi~~nqkl~s~L~i~~f~~~f~~q~l~t~GIa~Vas~P~~R~~G~~~~Ll~~sLre~~~k--G~p~s~L~----- 110 (389)
T COG4552 38 EPNSYVIYMNQKLASRLHIPPFIFWFGNQVLPTAGIAGVASAPTYRRRGALRALLAHSLREIARK--GYPVSALH----- 110 (389)
T ss_pred CCcceEEeehhhhhhcccccchheeeCCeeeeccceEEEEechhhccCcHHHHHHHHHHHHHHHc--CCeeEEec-----
Confidence 3446667777778777766643321111 14446668999999999999999999998554 88866664
Q ss_pred hhhHHHHHHcCCceeeeeee
Q 029943 143 VGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 143 ~~a~~~y~k~Gf~~~~~~~~ 162 (185)
+.+.+||+|.||+.-+..+.
T Consensus 111 P~s~~iYrKfGye~asn~~~ 130 (389)
T COG4552 111 PFSGGIYRKFGYEYASNYHE 130 (389)
T ss_pred cCchhhHhhccccccceEEE
Confidence 34688999999998877544
No 77
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=97.90 E-value=5.5e-05 Score=61.35 Aligned_cols=74 Identities=12% Similarity=0.114 Sum_probs=57.5
Q ss_pred EEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEE
Q 029943 99 IGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMF 176 (185)
Q Consensus 99 ~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~ 176 (185)
+.+.|+|++|++|+|+++++.+.+++. . +++.+... +--++.-.+|+.|+||.++..-...-...|.|.-+++=
T Consensus 535 vRIAvhPe~q~~GiGsrlL~~l~~~a~-~--~~Dwlgvs-FG~t~~L~rFW~rnGF~pVhls~~rn~~SGeys~i~lk 608 (758)
T COG1444 535 VRIAVHPELQRMGIGSRLLALLIEEAR-K--GLDWLGVS-FGYTEELLRFWLRNGFVPVHLSPTRNASSGEYTAIVLK 608 (758)
T ss_pred EEEEeCHHHHhcCHHHHHHHHHHHHHh-c--CCCEEeec-cCCCHHHHHHHHHcCeEEEEecCccCcCCCceeEEEEe
Confidence 346689999999999999999999984 3 67766654 44567889999999999998876654556776655543
No 78
>COG0454 WecD Histone acetyltransferase HPA2 and related acetyltransferases [Transcription / General function prediction only]
Probab=97.83 E-value=3.8e-05 Score=47.75 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=39.5
Q ss_pred EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCC
Q 029943 101 YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGF 154 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf 154 (185)
++|+|++||+|+|+.++..+++++.. . ++. .|..+..++++.||
T Consensus 87 l~v~~~~rg~Gig~~Ll~~~~~~~~~-~-g~~--------~~~~~~~~~~~~~~ 130 (156)
T COG0454 87 LYVLPEYRGKGIGSALLEAALEWARK-R-GIS--------LNRLALEVYEKNGF 130 (156)
T ss_pred EEecchhhccchHHHHHHHHHHHHHH-c-Cce--------ehHHHHHHHHhcCC
Confidence 78999999999999999999999854 4 655 78899999999999
No 79
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=0.00014 Score=55.73 Aligned_cols=131 Identities=12% Similarity=0.221 Sum_probs=93.5
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-----CCeeEEEEEEEecCCC
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-----NNRAIGAISVSANQGN 92 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~~~vG~~~~~~~~~~ 92 (185)
.++++++.++.+.+.+.+|.+.. .+|-......+.+++.++.+.. ....|.+.. |+.+||.+.+......
T Consensus 412 m~l~vs~~de~~i~RIsQLtqkT--NQFnlTtkRy~e~dV~~~~~~~---~~li~sv~l~DKfgDnGiigvviv~kk~~~ 486 (574)
T COG3882 412 MRLTVSKFDEVNIPRISQLTQKT--NQFNLTTKRYNEEDVRQMQEDP---NFLIFSVSLKDKFGDNGIIGVVIVEKKESE 486 (574)
T ss_pred EEEEEeeccccCcHHHHHHhhcc--cceeechhhhcHHHHHHHhhCC---CeEEEEEEeccccccCceEEEEEEEecCCe
Confidence 57889999999999999998643 3333334455778887755443 222333333 6779999988876633
Q ss_pred CCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec--cChhhHHHHHHcCCceeee
Q 029943 93 DKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV--ENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 93 ~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~--~N~~a~~~y~k~Gf~~~~~ 159 (185)
+.+ .+.+.=..-|+++-.+++..+++.|... |++.+.+.-.+ .|.+--.||+++||...++
T Consensus 487 ----w~IDt~lmSCRVlgRkvE~~l~~~~~e~A~~~--gi~tir~~Y~pt~kN~pv~~FyE~mgf~l~~e 550 (574)
T COG3882 487 ----WFIDTFLMSCRVLGRKVEQRLMNSLEEQALSE--GINTIRGYYIPTEKNAPVSDFYERMGFKLKGE 550 (574)
T ss_pred ----EEhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcceeeeEecccccCCcHHHHHHHhccccccc
Confidence 333 2223345558899999999999999655 99999987655 4889999999999996663
No 80
>TIGR03244 arg_catab_AstA arginine N-succinyltransferase. In many bacteria, the arginine succinyltransferase (ast) pathway operon consists of five genes, including this protein, arginine N-succinyltransferase (EC 2.3.1.109). In a few species, such as Pseudomonas aeruginosa, the member of this family is encoded adjacent to a paralog, and the two polypeptides form a heterodimeric enzyme, active on both arginine and ornithine. In such species, this polypeptide may be treated as the beta subunit of an enzyme that may be named either arginine N-succinyltransferase (AST) or arginine and orthithine N-succinyltransferase (AOST).
Probab=97.81 E-value=0.00031 Score=51.89 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=57.3
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHh-------cc--CCCCcEEEEEE--CCeeEEEEEEEec
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIEN-------KV--IPHPWFMAICV--NNRAIGAISVSAN 89 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~i~~--~~~~vG~~~~~~~ 89 (185)
.|||++.+|+++|.++...... .+.... .+.+...+.++. .. .+..+.|++++ .|++||++++...
T Consensus 1 vvRPv~~~Dl~aL~~LA~~sg~-G~TsLP--~d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a~ 77 (336)
T TIGR03244 1 IVRPVETSDLDALYQLAQSTGI-GLTSLP--ANEDLLSARIERAEKTFSGELTRAEQGYLFVLEDTETGTVAGVSAIEAA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCC-CcccCC--CCHHHHHHHHHHHHHHhcCcCCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 3799999999999999865432 111111 133333332221 11 12336677776 6899999997642
Q ss_pred CCC----------------------------------CCceEEEEEEECcCccCcCHHHHHHHH
Q 029943 90 QGN----------------------------------DKCRGEIGYVLGSKYWGKGIATRAVKM 119 (185)
Q Consensus 90 ~~~----------------------------------~~~~~~~~~~v~~~~rg~G~g~~ll~~ 119 (185)
.-. ..+.-..+++++|+||+.|.|+-|-+.
T Consensus 78 vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~SElctLfL~p~~R~~~~G~LLSr~ 141 (336)
T TIGR03244 78 VGLEEPFYNYRVGTVVHASKELGIYKALETLFLSNDLTGYSELCTLFLDPDYRKGGNGRLLSKS 141 (336)
T ss_pred ccCCCCCEEEEcCceeecCcccCCceeeeeEEeeccCCCCeeeEEEEECHHHcCCcchhhHHHH
Confidence 110 111123368899999999998855443
No 81
>TIGR03245 arg_AOST_alph arginine/ornithine succinyltransferase, alpha subunit. In some bacteria, including Pseudomonas aeruginosa, the astB gene (arginine N-succinyltransferase) is replaced by tandem paralogs that form a heterodimer. This heterodimer from P. aeruginosa is characterized as arginine and ornithine N-2 succinyltransferase (AOST). Members of this protein family represent the less widespread paralog, designated AruI, or arginine/ornithine succinyltransferase, alpha subunit.
Probab=97.80 E-value=0.00027 Score=52.14 Aligned_cols=96 Identities=14% Similarity=0.175 Sum_probs=57.1
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHH-------hc---cCCCCcEEEEEE--CCeeEEEEEEEe
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIE-------NK---VIPHPWFMAICV--NNRAIGAISVSA 88 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~---~~~~~~~~~i~~--~~~~vG~~~~~~ 88 (185)
.|||++.+|+++|.++...+.. .+..... +.+...+.++ .. ..+..+.|++++ .|++||++++..
T Consensus 1 viRpv~~~Dl~aL~~LA~~sG~-G~TsLP~--d~~~L~~rI~~S~~sF~~~~~~~~~~~YlFVLEDt~tg~vvGts~I~a 77 (336)
T TIGR03245 1 IVRPSRFADLPAIERLANESAI-GVTSLPA--DRAKLGEKIAQSERSFAAEVSFVGEERYLFVLEDTETGKLLGTSSIVA 77 (336)
T ss_pred CcccCccccHHHHHHHHHHcCC-CcccCCC--CHHHHHHHHHHHHHHHHhhcCCCCCccEEEEEEeCCCCcEEEEEeEEe
Confidence 3799999999999999765432 1111111 2333222222 11 122346777776 799999999764
Q ss_pred cCCC----------------------------------CCceEEEEEEECcCccCcCHHHHHHHH
Q 029943 89 NQGN----------------------------------DKCRGEIGYVLGSKYWGKGIATRAVKM 119 (185)
Q Consensus 89 ~~~~----------------------------------~~~~~~~~~~v~~~~rg~G~g~~ll~~ 119 (185)
..-. ..+.-..+++++|+||+.|.|+-|-+.
T Consensus 78 ~vG~~~PfY~yr~~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~lLSr~ 142 (336)
T TIGR03245 78 SAGYGEPFYSYRNDTLIHASRELKVNNKIHVLYMCHELTGSSLLCSFYVDPRLRKTEAAELLSRA 142 (336)
T ss_pred cccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhHHHHH
Confidence 2110 111123368899999999998865543
No 82
>PF06852 DUF1248: Protein of unknown function (DUF1248); InterPro: IPR009658 This entry represents a conserved region within a number of proteins of unknown function that seem to be specific to Caenorhabditis elegans. Note that some proteins in the entry contain more than one copy of this region.
Probab=97.79 E-value=0.002 Score=43.60 Aligned_cols=123 Identities=22% Similarity=0.253 Sum_probs=72.3
Q ss_pred eecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE--CCeeEEEEEEEecCCC----CCc
Q 029943 22 LRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV--NNRAIGAISVSANQGN----DKC 95 (185)
Q Consensus 22 ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~vG~~~~~~~~~~----~~~ 95 (185)
+..+.++-++++.++..+. ...| ..++...|-...... -+.++++. ..++|+.+.+-...+. +..
T Consensus 7 v~NP~~e~~d~fmk~~g~~-r~~F-------k~~Di~~wk~sf~~~-Y~l~~~~~KgT~~via~~~~~~~~~l~~~~d~p 77 (181)
T PF06852_consen 7 VINPPQEYFDQFMKLHGNE-RWNF-------KRNDIKLWKESFDDD-YWLVLTCLKGTDRVIATVHLIRFDPLNPSPDKP 77 (181)
T ss_pred EeCCCHHHHHHHHHHhcCC-cccc-------cHHHHHHHHHhhccC-eEEEEEEEcCCCcEEEEEEEEEeccCCCCCCCC
Confidence 4455666778888887542 1111 455666665555432 22333333 6679988888765542 111
Q ss_pred eEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHH-cCCceeee
Q 029943 96 RGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLK-AGFMQEGV 159 (185)
Q Consensus 96 ~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~ 159 (185)
...+|++ +.|+|||+|+++-+-..+.+.. ... +-+ ..+ ..|..+.++|.+ .||...+.
T Consensus 78 l~~~G~~w~~p~yRg~~~~kl~~~~~~~~~-~~~-~~N-~~~---~~~~~~~~~w~k~~G~~~~~h 137 (181)
T PF06852_consen 78 LQFIGFFWIDPEYRGKGIMKLQDDICMDEL-DSV-DDN-SVA---QGNVKMSNFWHKMFGFDDYGH 137 (181)
T ss_pred eEEEeeeeeCCcccCcchHHHHHHHHHHHh-ccC-CCc-eee---ecCHHHHHHHHHHhCCCCCcc
Confidence 2666765 9999999999975554444544 232 333 222 355667777765 68887776
No 83
>TIGR03243 arg_catab_AOST arginine and ornithine succinyltransferase subunits. In many bacteria, the sole member of this protein family is arginine N-succinyltransferase (EC 2.3.1.109), the AstA protein of the arginine succinyltransferase (ast) pathway. However, in Pseudomonas aeruginosa and several other species, a tandem gene pair encodes alpha and beta subunits of a heterodimer that is designated arginine and ornithine succinyltransferase (AOST).
Probab=97.74 E-value=0.00043 Score=51.10 Aligned_cols=96 Identities=16% Similarity=0.178 Sum_probs=56.9
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHH-------HHHhcc--CCCCcEEEEEE--CCeeEEEEEEEec
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIK-------HIENKV--IPHPWFMAICV--NNRAIGAISVSAN 89 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~~~~~~i~~--~~~~vG~~~~~~~ 89 (185)
.|||++.+|+++|.++...... .+..... +.+...+ -+.... .+..+.|++++ .|+++|++++...
T Consensus 1 vvRpv~~~Dl~aL~~LA~~sg~-G~TsLP~--d~~~L~~rI~~S~~sF~~~~~~~~~~YlFVLED~~tg~vvGts~I~a~ 77 (335)
T TIGR03243 1 IVRPVRTSDLDALMQLARESGI-GLTSLPA--DRAALGSRIARSEKSFAGESTRGEEGYLFVLEDTETGTVAGVSAIEAA 77 (335)
T ss_pred CcccCccccHHHHHHHHHHcCC-CcccCCC--CHHHHHHHHHHHHHHHhcccCCCCccEEEEEEeCCCCeEEEEEeEEec
Confidence 3799999999999999765432 1111111 2222222 221111 23346677776 7999999997642
Q ss_pred CCC----------------------------------CCceEEEEEEECcCccCcCHHHHHHHH
Q 029943 90 QGN----------------------------------DKCRGEIGYVLGSKYWGKGIATRAVKM 119 (185)
Q Consensus 90 ~~~----------------------------------~~~~~~~~~~v~~~~rg~G~g~~ll~~ 119 (185)
.-. ..+.-..+++++|+||+.|.|+-|-+.
T Consensus 78 vG~~~PfY~yrv~~~vhaS~~L~v~~~~~~L~l~nd~tG~sElctLfL~p~~R~~~~G~LLSr~ 141 (335)
T TIGR03243 78 VGLDEPFYNYRVGTLVHASRELGVYNKIPTLTLSNDLTGSSELCTLFLDPDYRKGGNGRLLSRS 141 (335)
T ss_pred ccCCCCCEEEEcCceeecCcccCCccceeeEEeeccCCCCeeeEEEEECHHHcCCCchhhHHHH
Confidence 110 111123368899999999999865544
No 84
>PHA01733 hypothetical protein
Probab=97.66 E-value=5.4e-05 Score=49.12 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=72.2
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcE-EEEEECCeeEEEEEEEecCCCCCceEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWF-MAICVNNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
.|||+|++|+..+..-..+.+......... ++. .+.......... +.+..+|.++|..+... +..... +..
T Consensus 4 ~IrpaT~~d~~~l~~n~r~~Dr~E~ealg~--~p~----~l~~~~~~s~~~v~~~~~nG~l~aI~Gv~~-d~~~~v-G~p 75 (153)
T PHA01733 4 NNRPATQADATEVAQNLRQEDREEIEGLGH--SPL----ALHLSLDVSENVVAFVAPDGSLAGVAGLVE-DMGNRV-GEI 75 (153)
T ss_pred ccccccHHHHHHHHccCCHHHHHHHHHhCC--Ccc----cchhhhhccccceEEEecCCcEEEEecccc-cccCCC-Cce
Confidence 589999999877776333333333222222 111 222112222223 44555899999999987 322221 222
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
|+|..+.-.+ +-++.+...-.+..+.. .+..+.-.|...|..+++|++.+||+.....
T Consensus 76 -WlV~T~~v~k-~~~~f~re~r~~l~e~~-~Yp~LwNyV~~~N~~hir~Lk~lGF~f~~~~ 133 (153)
T PHA01733 76 -WMVCTPAIEK-NPIALLRGAKWWLPKSR-NYDLLWNIVDKRNLVHRKLLRKLGFKGLRYV 133 (153)
T ss_pred -eEEecHHhHh-CCHHHHHHHHHHHHHhc-cccHHHHhHhcccHHHHHHHHHcCceeeccc
Confidence 3333221111 22333333333332233 6778889999999999999999999987654
No 85
>PHA00432 internal virion protein A
Probab=97.63 E-value=0.00056 Score=43.78 Aligned_cols=113 Identities=12% Similarity=0.085 Sum_probs=62.3
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHH-hccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIE-NKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEI 99 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~ 99 (185)
.|||+|++|+..+ .+..+ +.++++.+-. -.......++.+..+|.+++.++ +.. +.+
T Consensus 2 ~I~paT~~di~~~-~lr~~-------------D~~E~~a~g~~~~~~~s~~~~~~~~~G~~~aI~G----n~G----~~v 59 (137)
T PHA00432 2 YIRQTTERDFDVF-NPSFE-------------DILEAKAYGIEPSFPPDSECVTLSLDGFVLAIGG----NQG----DQV 59 (137)
T ss_pred ccccccHHHHHHc-CCCHH-------------HHHHHHhcCCCCCCCCCceEEEEecCCeEEEEec----CCC----Cce
Confidence 5889999998877 33221 1111111100 11111334555666999988873 111 221
Q ss_pred EEEEC-cCccC--cCHHHHHH---HHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 100 GYVLG-SKYWG--KGIATRAV---KMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 100 ~~~v~-~~~rg--~G~g~~ll---~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
|+|. +.-.+ ++.-++.. ...++.+.+ ....+.-.|...|..+++|++.+||+....
T Consensus 60 -W~v~T~~v~~~~~~~~reF~k~~~~~ld~ml~---~yp~LwNyV~~~N~~hir~Lk~lGf~f~~e 121 (137)
T PHA00432 60 -WFVTSDQVWRLTKKEKREFRKLIMEYRDMMLD---QYPSLWNYVWVGNKSHIRFLKSIGAVFHNE 121 (137)
T ss_pred -EEEecHHhhhCChhhhHHHHHHHHHHHHHHHH---hhhhhheeeecCCHHHHHHHHHcCeeeecc
Confidence 3332 22111 12223333 333333333 457788999999999999999999998776
No 86
>PF13480 Acetyltransf_6: Acetyltransferase (GNAT) domain
Probab=97.58 E-value=0.0035 Score=40.51 Aligned_cols=115 Identities=9% Similarity=-0.030 Sum_probs=73.1
Q ss_pred ceEeecC-CccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC-cEEEEEECCeeEEEEEEEecCCCCCce
Q 029943 19 DISLRPM-DLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP-WFMAICVNNRAIGAISVSANQGNDKCR 96 (185)
Q Consensus 19 ~~~ir~~-~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~vG~~~~~~~~~~~~~~ 96 (185)
.+.++.. .++|++.+++++............+..+.+-....+........ ..+++..+|++||+......... .
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~g~~va~~~~~~~~~~--~- 95 (142)
T PF13480_consen 19 GVRFEVATDPADLEAFYELYRESWARRHGGFAPPFSRDFFRDLLRSLAESGRLRLFVLYDGGEPVAFALGFRHGGT--L- 95 (142)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHHHhhhhCCCCCcchHHHHHHHHHhhccCCCEEEEEEEECCEEEEEEEEEEECCE--E-
Confidence 4666554 56688888887754322220011233355555556665533333 44445559999999877775432 1
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEe
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALV 138 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~ 138 (185)
...-...+|+++..+.|..++..++++|++. |++.+.+..
T Consensus 96 ~~~~~g~~~~~~~~~~~~~l~~~~i~~a~~~--g~~~~d~g~ 135 (142)
T PF13480_consen 96 YYWYGGYDPEYRKYSPGRLLLWEAIRWAIER--GLRYFDFGG 135 (142)
T ss_pred EEEEEEECHhhHhCCHHHHHHHHHHHHHHHC--CCCEEEECC
Confidence 2222336999999999999999999999766 898887754
No 87
>PHA00771 head assembly protein
Probab=97.32 E-value=0.0042 Score=38.91 Aligned_cols=105 Identities=12% Similarity=0.080 Sum_probs=81.3
Q ss_pred CcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHH
Q 029943 69 PWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKV 148 (185)
Q Consensus 69 ~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~ 148 (185)
..++.+-..|..-|.+.+....+. ..++.-.-+|++||+ ++ +.-....+|..+.. .+..+...+...-...+-.
T Consensus 38 ~~Y~g~~~~~~yeGivl~~eV~p~---~~ecHa~y~P~fRG~-ya-~~~r~F~kwlL~Nt-~f~~vit~vp~kt~~G~vi 111 (151)
T PHA00771 38 CRYFEVNVHGQFGGIVYYNEIQPL---TFDCHAMYLPEIRGF-SK-EIGLAFWRYILTNT-TVQCVTSFAARKFRHGQMY 111 (151)
T ss_pred cEEEeecccceeeeEEEEEEeeeE---EEEEEeeeCccccch-hH-HHHHHHHHHHhcCC-ceeEEEEecccccccchhh
Confidence 344444457777777776555433 367777789999986 33 77778888888887 8999998888887888889
Q ss_pred HHHcCCceeeeeeeeeecCCeEEEEEEEeeccCC
Q 029943 149 LLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTD 182 (185)
Q Consensus 149 y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~~ 182 (185)
.+-+|.+.+|..++++ .++ .|+..|.+++++
T Consensus 112 c~lig~rRVG~id~a~-~g~--~~vT~Yq~TR~~ 142 (151)
T PHA00771 112 CAMIGLKRVGTIKKYF-KGV--DDVTFYSATREE 142 (151)
T ss_pred hhhhCCceeeeHHHHh-cCC--CceEEEEcCHHH
Confidence 9999999999998886 344 899999998875
No 88
>PF01233 NMT: Myristoyl-CoA:protein N-myristoyltransferase, N-terminal domain; InterPro: IPR022676 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the N-terminal region. ; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 4A33_A 3H5Z_A 4A2Z_A 2WSA_A ....
Probab=97.28 E-value=0.0051 Score=40.52 Aligned_cols=110 Identities=14% Similarity=0.168 Sum_probs=62.3
Q ss_pred CceEeecCCcc---CHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCC-CCcEEEEEE--CCeeEEEEEEEecCC
Q 029943 18 SDISLRPMDLS---DVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIP-HPWFMAICV--NNRAIGAISVSANQG 91 (185)
Q Consensus 18 ~~~~ir~~~~~---D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~--~~~~vG~~~~~~~~~ 91 (185)
+.+....++.+ +++.+++++++..+..-.......-..++..|.-....- ..+...+.. ++++|||++..+..-
T Consensus 22 ~gF~W~~~dl~d~~~l~ely~lL~~nYVEDdd~~fRf~YS~efL~WaL~pPg~~~~whiGVR~~~~~kLvgfIsaip~~i 101 (162)
T PF01233_consen 22 DGFEWSTLDLNDDEELKELYELLNENYVEDDDNMFRFDYSKEFLKWALKPPGWKKEWHIGVRVKSSKKLVGFISAIPATI 101 (162)
T ss_dssp TTEEEEE--TTSHHHHHHHHHHHHHHSSBTTTSSEEE---HHHHHHHHTSTT--GGGEEEEEETTTTEEEEEEEEEEEEE
T ss_pred CCCEEEecCCCCHHHHHHHHHHHHhcCccCCcceEEeeCCHHHHhheeeCcCCccceEEEEEECCCCEEEEEEccceEEE
Confidence 46777777654 455677776543322211111111123333443332221 125666766 799999999876542
Q ss_pred CCCc----eEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 92 NDKC----RGEIGYV-LGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 92 ~~~~----~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
.-.. ..++.|. |+++.|.++++.-|++.+.+.+...
T Consensus 102 rv~~~~~~~~eINFLCVhKklRskrlAPvLIkEItRRvn~~ 142 (162)
T PF01233_consen 102 RVRDKVIKMVEINFLCVHKKLRSKRLAPVLIKEITRRVNLQ 142 (162)
T ss_dssp EETTEEEEEEEEEEEEE-GGGTTSSHHHHHHHHHHHHHHTT
T ss_pred EEeeeEeeeeeEEEEeecHhHhhcCCcHHHHHHHHHHhhhc
Confidence 2111 1666655 9999999999999999999998444
No 89
>PF00765 Autoind_synth: Autoinducer synthetase; InterPro: IPR001690 Bacterial species have many methods of controlling gene expression and cell growth. Regulation of gene expression in response to changes in cell density is termed quorum sensing [, ]. Quorum-sensing bacteria produce, release and respond to hormone-like molecules (autoinducers) that accumulate in the external environment as the cell population grows. Once a threshold of these molecules is reached, a signal transduction cascade is triggered that ultimately leads to behavioural changes in the bacterium []. Autoinducers are thus clearly important mediators of molecular communication. Conjugal transfer of Agrobacterium octopine-type Ti plasmids is activated by octopine, a metabolite released from plant tumours []. Octopine causes conjugal donors to secrete a pheromone, Agrobacterium autoinducer (AAI), and exogenous AAI further stimulates conjugation. The putative AAI synthase and an AAI-responsive transcriptional regulator have been found to be encoded by the Ti plasmid traI and traR genes, respectively. TraR and TraI are similar to the LuxR and LuxI regulatory proteins of Vibrio fischeri, and AAI is similar in structure to the diffusable V. fischeri autoinducer, the inducing ligand of LuxR. TraR activates target genes in the presence of AAI and also activates traR and traI themselves, creating two positive-feedback loops. TraR-AAI-mediated activation in wild-type Agrobacterium strains is enhanced by culturing on solid media, suggesting a possible role in cell density sensing []. Production of light by the marine bacterium V. fischeri and by recombinant hosts containing cloned lux genes is controlled by the density of the culture []. Density-dependent regulation of lux gene expression has been shown to require a locus consisting of the luxR and luxI genes. In these and other Gram-negative bacteria, N-(3-oxohexanoyl)-L-homoserine lactone (OHHL) acts as the autoinducer by binding to transcriptional regulatory proteins and activating them []. OHHL and related molecules, such as N-butanoyl- (BHL), N-hexanoyl- (HHL) and N-oxododecanoyl- (PAI) homoserine lactones, are produced by a family of proteins that share a high level of sequence similarity. Proteins which currently members of this family include: luxI from V. fischeri. ahyI and asaI from Aeromonas species, which synthesize BHL and whose targets are ahyR and asaR respectively. carI from Erwinia carotovora. The target of OHHL is carR which activates genes involved in the biosynthesis of carbapenem antibiotics. eagI from Enterobacter agglomerans. The target of OHHL is not yet known. esaI from Erwinia stewartii. expI from Erwinia carotovora. lasI from Pseudomonas aeruginosa, which synthesizes PAI and whose target is lasR which activates the transcription of the elastase gene. rhlI (or vsmI) from P. aeruginosa, which synthesizes BHL and HHL and whose target is rhlR. swrI from Serratia liquefaciens, which synthesizes BHL. yenI from Yersinia enterocolitica. ; GO: 0007165 signal transduction; PDB: 3P2H_A 3P2F_A 1KZF_A 1K4J_A 1RO5_A.
Probab=96.99 E-value=0.056 Score=36.95 Aligned_cols=98 Identities=10% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCcEEEEEECCeeEEEEEEEecCCC----------------C--CceEEEE-EEECcCccC------cCHHHHHHHHHHH
Q 029943 68 HPWFMAICVNNRAIGAISVSANQGN----------------D--KCRGEIG-YVLGSKYWG------KGIATRAVKMASD 122 (185)
Q Consensus 68 ~~~~~~i~~~~~~vG~~~~~~~~~~----------------~--~~~~~~~-~~v~~~~rg------~G~g~~ll~~~~~ 122 (185)
...+.+...+|+++|++-+.+...+ + ...+|++ ++|+++..+ .-+...|+..+.+
T Consensus 44 ~~~ylv~~~~g~v~g~~RLlptt~p~ML~~~F~~ll~~~~~p~~~~vwE~SRf~v~~~~~~~~~~~~~~~~~~L~~~~~e 123 (182)
T PF00765_consen 44 DAVYLVALDDGRVVGCARLLPTTGPYMLSDVFPHLLPDGPAPRSPDVWELSRFCVDPDRRRSRAGSRSPVTMELLLGMVE 123 (182)
T ss_dssp T-EEEEEEETTEEEEEEEEEETTS--HHHHCTGGGHTTS---SSTTEEEEEEEEE-HCCCHHCHSCC-THHHHHHHHHHH
T ss_pred CCeEEEEEECCEEEEEeeeccCCCcchhhhHHHHHhCCCCCCCCCcceeeeEEEEcccccccccccccHHHHHHHHHHHH
Confidence 3344445558999999999875433 1 1227774 568877432 2467899999999
Q ss_pred HHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEE
Q 029943 123 AIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTR 171 (185)
Q Consensus 123 ~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~ 171 (185)
+|.+. |++.+.+-+. .+..+++++.||...-.-.. ...+|...
T Consensus 124 ~a~~~--gi~~~v~V~~---~~~~r~l~r~G~~~~~lG~~-~~~~~~~~ 166 (182)
T PF00765_consen 124 FALSN--GIRHIVGVVD---PAMERILRRAGWPVRRLGPP-RSIGGERV 166 (182)
T ss_dssp HHHCT--T-SEEEEEEE---HHHHHHHHHCT-EEEESSEE-EEETTEEE
T ss_pred HHHHC--CCCEEEEEEC---hHHHHHHHHcCCceEECCCC-eeeCCeEE
Confidence 99555 9999988775 45899999999987655332 23455433
No 90
>PF13880 Acetyltransf_13: ESCO1/2 acetyl-transferase
Probab=96.92 E-value=0.0017 Score=36.70 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHH
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAI 124 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a 124 (185)
.+||.|.+|++|||++|++.+.+..
T Consensus 10 RIWV~~~~RR~GIAt~Lld~ar~~~ 34 (70)
T PF13880_consen 10 RIWVSPSHRRKGIATRLLDAARENF 34 (70)
T ss_pred EEEeChhhhhhhHHHHHHHHHHHhc
Confidence 5789999999999999999988764
No 91
>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]
Probab=96.88 E-value=0.0024 Score=48.95 Aligned_cols=79 Identities=14% Similarity=0.246 Sum_probs=56.9
Q ss_pred CCeeEEEEEEEecCCCCCc------e---EEEEEE-----E---CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEee
Q 029943 77 NNRAIGAISVSANQGNDKC------R---GEIGYV-----L---GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVD 139 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~------~---~~~~~~-----v---~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~ 139 (185)
++.++|+..+......... + -++..+ | ...||.+|+|++|++.+++.|.++ +..+|...
T Consensus 415 ~d~lig~lrlR~p~e~~~r~e~~~~~aivrelhvyg~~vpig~~~~~~QH~G~G~~L~~~AE~ia~ee--~~~ki~vi-- 490 (515)
T COG1243 415 NDILIGFLRLREPSEGAHREEIDDKTAIVRELHVYGSEVPIGKREDEWQHRGYGRELLEEAERIAREE--GAKKILVI-- 490 (515)
T ss_pred hhhhhheeeecccccchhhhhcccchhhhhhhhccccccccccCcchhhcccHHHHHHHHHHHHHHhh--ccccEEEE--
Confidence 4678999998876652110 0 122222 1 367999999999999999999666 67777543
Q ss_pred ccChhhHHHHHHcCCceeeee
Q 029943 140 VENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 140 ~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+-..++..|+|+||+..|-+
T Consensus 491 -SgiG~ReYy~k~GY~~~gpY 510 (515)
T COG1243 491 -SGIGVREYYRKLGYELDGPY 510 (515)
T ss_pred -ecccHHHHHHHhCccccCCc
Confidence 34679999999999988754
No 92
>PF09390 DUF1999: Protein of unknown function (DUF1999); InterPro: IPR018987 This family contains a putative Fe-S binding reductase (Q72J89 from SWISSPROT) whose structure adopts an alpha and beta fold. ; PDB: 2D4O_A 2D4P_A.
Probab=96.84 E-value=0.058 Score=34.78 Aligned_cols=131 Identities=11% Similarity=0.093 Sum_probs=73.9
Q ss_pred eEeecCCccCHHHHHHhh------cCcceeeeccC---CCCCCHHHHHHHHHhccCCCCcEEEEE-ECCeeEEEEEEEec
Q 029943 20 ISLRPMDLSDVDDFMVWA------SDDKVTHFCSY---GPYTSREQGIKHIENKVIPHPWFMAIC-VNNRAIGAISVSAN 89 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~vG~~~~~~~ 89 (185)
+.+|++.+.|++.+..+= .+|........ ....+.-...+|+.+. ...|+.. .+|.+.||+.....
T Consensus 1 M~yR~f~e~D~~aL~ald~a~qr~~dP~fd~lperer~gr~~tSl~Alrfy~Rs----gHSFvA~~e~~~~~GfvLAQaV 76 (161)
T PF09390_consen 1 MRYRPFTEPDFAALQALDLAAQRRTDPAFDGLPEREREGRLSTSLAALRFYERS----GHSFVAEDEGGELQGFVLAQAV 76 (161)
T ss_dssp -EEE---GGGHHHHHHC--------------------STTS---HHHHHHHHCC----S--EEEE-ETTEEEEEEEEEEE
T ss_pred CcccccCcccHHHHHHHhhhccccccccccccccccccccccCCHHHhhhhhcc----CCcEEEEccCCceeeeeehhHH
Confidence 468999999999988762 12221111111 1122344455666664 4567777 58899999999998
Q ss_pred CCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 90 QGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 90 ~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
...++.+..+.-.+.++-+......-|+.++.+-|.+. ++-.|.+.+.+ ....-.+.-||...+.
T Consensus 77 WQGdrptVlV~ri~~~~~~~~~~~~GLLrAvvKSAYDa--~VYEv~l~l~p---~l~~A~~a~~~~~~~~ 141 (161)
T PF09390_consen 77 WQGDRPTVLVRRILLAPGEPEEVYEGLLRAVVKSAYDA--GVYEVHLHLDP---ELEAAARAEGFRLGGQ 141 (161)
T ss_dssp E-SSSEEEEEEEE---EESSHHHHHHHHHHHHHHHHHT--T-SEEEE---T---HHHHHHHHTT----S-
T ss_pred hcCCCceEEEEEeecCCCCcHHHHHHHHHHHHHhhhcc--ceEEEEeeCCH---HHHHHHhhcccccCCe
Confidence 87777555555555566666788888999999998666 88899988877 5667778899998774
No 93
>PF02799 NMT_C: Myristoyl-CoA:protein N-myristoyltransferase, C-terminal domain; InterPro: IPR022677 Myristoyl-CoA:protein N-myristoyltransferase (2.3.1.97 from EC) (Nmt) [] is the enzyme responsible for transferring a myristate group on the N-terminal glycine of a number of cellular eukaryotics and viral proteins. Nmt is a monomeric protein of about 50 to 60kDa whose sequence appears to be well conserved. The N and C-terminal domains of NMT are structurally similar, each adopting an acyl-CoA N-acyltransferase-like fold. This entry represents the C-terminal region.; GO: 0004379 glycylpeptide N-tetradecanoyltransferase activity; PDB: 2P6G_B 2P6F_F 2P6E_A 1IIC_A 1IID_A 2NMT_A 2WUU_A 1IYL_B 1NMT_B 1IYK_A ....
Probab=96.68 E-value=0.038 Score=37.75 Aligned_cols=131 Identities=16% Similarity=0.089 Sum_probs=81.7
Q ss_pred eecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCC----CCCc-
Q 029943 22 LRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQG----NDKC- 95 (185)
Q Consensus 22 ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~----~~~~- 95 (185)
+|+++++|++++.+++++-. .++ ...+..+.++++.|+.... +--+.++++. +|++-.+++++..+. .+.+
T Consensus 31 lR~m~~~Dv~~v~~Ll~~yl-~~f-~l~~~fs~eev~Hw~lp~~-~Vv~syVve~~~~~ITDf~SFY~Lpstvi~~~k~~ 107 (190)
T PF02799_consen 31 LRPMEEKDVPQVTKLLNKYL-KKF-DLAPVFSEEEVKHWFLPRK-NVVYSYVVEDPDGKITDFFSFYSLPSTVIGNPKHK 107 (190)
T ss_dssp EEE--GGGHHHHHHHHHHHH-TTS-SEEEE--HHHHHHHHS-BT-TTEEEEEEEETTSEEEEEEEEEEEEEEESSSSSSS
T ss_pred cccCchhhHHHHHHHHHHHH-Hhc-ccccccCHHHHHhhcccCC-CeEEEEEEecCCCceeeEEEEeecceeecCCCCcc
Confidence 99999999999999986421 122 2245558899999887632 1235566666 558889988877542 1111
Q ss_pred e---EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 96 R---GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 96 ~---~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
. +..-+.+...- --++|+..++-.|.+ . |++...+-..-+|. .|++.++|..-.=.-+++
T Consensus 108 ~l~aAY~fY~~~~~~----~l~~Lm~DaLi~Ak~-~-gfDVFNaLd~mdN~---~fL~~lKFg~GdG~L~YY 170 (190)
T PF02799_consen 108 TLKAAYSFYYVATST----RLKELMNDALILAKN-E-GFDVFNALDLMDNS---SFLEDLKFGPGDGNLNYY 170 (190)
T ss_dssp EEEEEEEEEEEESSS----HHHHHHHHHHHHHHH-T-TESEEEEESTTTGG---GTTTTTT-EEEEEEEEEE
T ss_pred ceeeeeeeeeeecCC----CHHHHHHHHHHHHHH-c-CCCEEehhhhccch---hhHhhCCccCCCCCeEEE
Confidence 1 33334455442 236788888888844 5 99999998888886 478999998644333443
No 94
>PF05301 Mec-17: Touch receptor neuron protein Mec-17; InterPro: IPR007965 Mec-17 is the protein product of one of the 18 genes required for the development and function of the touch receptor neuron for gentle touch. Mec-17 is specifically required for maintaining the differentiation of the touch receptor []. This family is conserved to higher eukaryotes.; GO: 0019799 tubulin N-acetyltransferase activity
Probab=96.60 E-value=0.021 Score=35.67 Aligned_cols=76 Identities=11% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCeeEEEEEEEe-----cCCCCCc------eEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhh
Q 029943 77 NNRAIGAISVSA-----NQGNDKC------RGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGS 145 (185)
Q Consensus 77 ~~~~vG~~~~~~-----~~~~~~~------~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a 145 (185)
.|.++|+.-+.. .+..... -+.+.++|+++.|++|+|++|++.++..- . +.--.+.++..-+..
T Consensus 17 ~g~viG~LKVG~K~Lfl~d~~g~~~e~~~~~cvLDFyVhes~QR~G~Gk~LF~~ML~~e--~---~~p~~~a~DrPS~Kl 91 (120)
T PF05301_consen 17 KGAVIGFLKVGYKKLFLLDERGQHREIEPLLCVLDFYVHESRQRRGYGKRLFDHMLQEE--N---VSPHQLAIDRPSPKL 91 (120)
T ss_pred CceEEEEEEEeeeeEEEEcCCCCEEEecccceeeeEEEEeceeccCchHHHHHHHHHHc--C---CCcccceecCCcHHH
Confidence 356888876543 2222111 15678999999999999999999999863 2 333334455555677
Q ss_pred HHHHHHcCCceee
Q 029943 146 QKVLLKAGFMQEG 158 (185)
Q Consensus 146 ~~~y~k~Gf~~~~ 158 (185)
++|++|. |....
T Consensus 92 l~Fl~Kh-y~L~~ 103 (120)
T PF05301_consen 92 LSFLKKH-YGLQR 103 (120)
T ss_pred HHHHHHh-cCCCc
Confidence 8888776 44433
No 95
>TIGR03827 GNAT_ablB putative beta-lysine N-acetyltransferase. Members of this protein family are GNAT family acetyltransferases, based on a seed alignment in which every member is associated with a lysine 2,3-aminomutase family protein, usually as the adjacent gene. This family includes AblB, the enzyme beta-lysine acetyltransferase that completes the two-step synthesis of the osmolyte (compatible solute) N-epsilon-acetyl-beta-lysine; all members of the family may have this function. Note that N-epsilon-acetyl-beta-lysine has been observed only in methanogenic archaea (e.g. Methanosarcina) but that this model, paired with TIGR03820, suggests a much broader distribution.
Probab=96.44 E-value=0.012 Score=42.68 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEeeccCCC
Q 029943 111 GIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLLSTDP 183 (185)
Q Consensus 111 G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~~~~~ 183 (185)
|-...++..+.+.|.++ |+.+|++.|...+ ..+|++.||..+|..+.++ .| .|.+.|+...+.+
T Consensus 21 ~~~~~~~~~~~~~a~~~--~~~ki~~~~~~~~---~~~~~~~g~~~e~~i~~~f--~g--~~~~~~~~~~~~~ 84 (266)
T TIGR03827 21 NDVEALIPDLDALAKKE--GYTKIIAKVPGSD---KPLFEERGYLEEAKIPGYF--NG--HDAYFMSKYLDED 84 (266)
T ss_pred ccHHHHHHHHHHHHHHc--CCcEEEEEccHHH---HHHHHHCCCeEEEeccccc--CC--CceEEEEEcCchH
Confidence 44688999999999555 9999999998874 7899999999999988643 55 3788888877664
No 96
>KOG2535 consensus RNA polymerase II elongator complex, subunit ELP3/histone acetyltransferase [Chromatin structure and dynamics; Transcription]
Probab=96.26 E-value=0.0094 Score=44.21 Aligned_cols=52 Identities=19% Similarity=0.311 Sum_probs=44.0
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
.+||.||+|+-|++.+++.|.++. |-.+|... .....+..|+|+||+..|-+
T Consensus 497 ~KfQHQG~GtLLmeEAERIAr~EH-gS~KiavI---SGVGtR~YY~klGY~LdGPY 548 (554)
T KOG2535|consen 497 TKFQHQGFGTLLMEEAERIAREEH-GSGKIAVI---SGVGTRNYYRKLGYELDGPY 548 (554)
T ss_pred hhhhhcchhhHHHHHHHHHHHHhc-CCCceEEE---eccchHHHHHhhCeeecChh
Confidence 579999999999999999999888 88877543 34568999999999988753
No 97
>TIGR03019 pepcterm_femAB FemAB-related protein, PEP-CTERM system-associated. Members of this protein family are found always as part of extended exopolysaccharide biosynthesis loci in bacteria. In nearly every case, these loci contain determinants for the processing of the PEP-CTERM proposed C-terminal protein sorting signal. This family shows remote, local sequence similarity to the FemAB protein family (see pfam02388), whose members
Probab=96.25 E-value=0.11 Score=38.92 Aligned_cols=138 Identities=11% Similarity=-0.007 Sum_probs=89.6
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEE-ECCeeEEEEEEEecCCCCCce
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAIC-VNNRAIGAISVSANQGNDKCR 96 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~vG~~~~~~~~~~~~~~ 96 (185)
..++++. .+|++.+++++..... + .+ .+..+.+-+++.++... +....+++. .+|++||.+.+.....
T Consensus 150 ~Gv~v~~--~~~l~~F~~l~~~t~~-r-~g-~p~~~~~~f~~l~~~~~-~~~~l~~a~~~~g~~va~~l~~~~~~----- 218 (330)
T TIGR03019 150 AGLTVTV--DGDLDRFYDVYAENMR-D-LG-TPVFSRRYFRLLKDVFG-EDCEVLTVRLGDGVVASAVLSFYFRD----- 218 (330)
T ss_pred CCeEEEE--CCcHHHHHHHHHHHHh-c-CC-CCCCCHHHHHHHHHhcc-cCEEEEEEEeCCCCEEEEEEEEEeCC-----
Confidence 3466654 3568888888764321 1 11 22335555555555432 233344455 4888887766555432
Q ss_pred EEEEEE--ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCC
Q 029943 97 GEIGYV--LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKG 168 (185)
Q Consensus 97 ~~~~~~--v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g 168 (185)
....++ .+++++..+-+.-|.-.++++|.++ |++...+.....|....+|=++.||+.....-.++...|
T Consensus 219 ~~~~~~~g~~~~~~~~~~~~lL~w~~i~~a~~~--G~~~fDfG~s~~~~G~~~FK~~~G~~~~~l~~~~~~~~~ 290 (330)
T TIGR03019 219 EVLPYYAGGLREARDVAANDLMYWELMRRACER--GLRVFDFGRSKRGTGPFKFKKNWGFEPQPLHYEYLLYEG 290 (330)
T ss_pred EEEEEeccChHHHHhhChHHHHHHHHHHHHHHC--CCcEEEcCCCCCCCccHHHHhcCCCeeccceEEEEccCC
Confidence 112222 4688998899999999999999666 999999887666777788888899999887766554444
No 98
>COG3375 Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.13 Score=36.04 Aligned_cols=86 Identities=9% Similarity=0.020 Sum_probs=57.0
Q ss_pred CCcEEEEEE-CCeeEEEEEEEecCCCCCceEEEEE--EECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChh
Q 029943 68 HPWFMAICV-NNRAIGAISVSANQGNDKCRGEIGY--VLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVG 144 (185)
Q Consensus 68 ~~~~~~i~~-~~~~vG~~~~~~~~~~~~~~~~~~~--~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~ 144 (185)
......... +|++||...-.+....... ..-+- .|.|++++.|+|-+|-..--+++... |+..+...-+|-|.-
T Consensus 45 GGlvlgAf~~dg~lVGls~G~pg~r~g~~-y~ySH~~gV~e~~k~sglg~aLK~~Qre~a~~~--G~tli~WTfDPl~al 121 (266)
T COG3375 45 GGLVLGAFSADGRLVGLSYGYPGGRGGSL-YLYSHMLGVREEVKGSGLGVALKMKQRERALSM--GYTLIAWTFDPLNAL 121 (266)
T ss_pred CCeEEEEEcCCCcEEEEEeccCCcCCCce-eeeeeehhccccccccchhhhhHHHHHHHHHhc--CeeeEEEecccchhh
Confidence 344444444 6799999877773222221 22222 28899999999999998888898555 999999988888754
Q ss_pred hHHH-HHHcCCce
Q 029943 145 SQKV-LLKAGFMQ 156 (185)
Q Consensus 145 a~~~-y~k~Gf~~ 156 (185)
--+| +-|+|-.-
T Consensus 122 NA~fNi~KLGa~a 134 (266)
T COG3375 122 NARFNISKLGAIA 134 (266)
T ss_pred hhhcchhhhceeE
Confidence 3332 34555443
No 99
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.047 Score=43.31 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=44.1
Q ss_pred CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 106 ~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+.-.-|+.+++++-++.-+ +.. |.+...+.|.++...-++||-++||...+..
T Consensus 827 ~a~D~~~~k~m~~vll~tL-~aN-GsrGaf~~V~~dD~~~~~fys~lG~~d~~~~ 879 (891)
T KOG3698|consen 827 DASDAHPMKKMIQVLLVTL-AAN-GSRGAFLTVAIDDIERQKFYSELGLTDLGLS 879 (891)
T ss_pred ccccchHHHHHHHHHHHHH-Hhc-CCcceeEEechhHHHHHHHHHHhchHHHhHh
Confidence 3335678888888888877 455 9999999999999999999999999987764
No 100
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.86 E-value=0.12 Score=38.66 Aligned_cols=133 Identities=16% Similarity=0.085 Sum_probs=85.8
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCC----CC
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGN----DK 94 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~----~~ 94 (185)
=-+|++++.|.+++.+|+.+.. .+| ...+..+.+++..|+.-... --+.++++. +|++-+|+++...+.. +.
T Consensus 261 ~G~R~me~kDvp~V~~Ll~~yl-~qf-~la~~f~~eev~Hwf~p~e~-VV~syVvesp~g~ITDF~SFy~lpsTv~~~~~ 337 (421)
T KOG2779|consen 261 PGLREMEEKDVPAVFRLLRNYL-KQF-ELAPVFDEEEVEHWFLPREN-VVYSYVVESPNGKITDFCSFYSLPSTVMGNPK 337 (421)
T ss_pred CCcccccccchHHHHHHHHHHH-Hhe-ecccccCHHHhHhhcccccc-eEEEEEEECCCCcccceeeEEeccccccCCCC
Confidence 3589999999999999987532 222 12445578888887764431 224556665 8899999999876542 11
Q ss_pred c-e---EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 95 C-R---GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 95 ~-~---~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
+ + +..-+.++.+- --.+|+.-++-.| +.. |++...+-..-+|. .|+++++|-.-.-.-+++
T Consensus 338 ~ktl~aaYlyY~v~~~t----~~~~lvnDalila-k~~-gfDVFNAld~meN~---~fl~~LkFg~GdG~l~YY 402 (421)
T KOG2779|consen 338 YKTLQAAYLYYNVATST----PLLQLVNDALILA-KQK-GFDVFNALDLMENE---SFLKDLKFGPGDGNLQYY 402 (421)
T ss_pred cceeeeeeEEEeccCCc----cHHHHHHHHHHHH-Hhc-CCceeehhhhhhhh---hHHHhcCcCcCCCceeEE
Confidence 1 1 23223354441 1356777777787 444 89988887777775 599999998755444444
No 101
>cd04264 DUF619-NAGS DUF619 domain of various N-acetylglutamate Synthases of the fungal arginine-biosynthetic pathway and urea cycle found in humans and fish. DUF619-NAGS: This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=95.64 E-value=0.22 Score=30.39 Aligned_cols=65 Identities=15% Similarity=0.060 Sum_probs=44.8
Q ss_pred EEEEECCeeEEEEEEEecCCCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChh
Q 029943 72 MAICVNNRAIGAISVSANQGNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVG 144 (185)
Q Consensus 72 ~~i~~~~~~vG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~ 144 (185)
+.+..++...|.+.+.+..+.... +.+ -+.|.++.||+|+|..++..+.+- ..++...+.++|+-
T Consensus 11 ~~~y~~e~y~~~aIvt~~~~~~~~-~yLdKfaV~~~~~g~gvad~vf~~i~~d-------~~~L~Wrsr~~n~~ 76 (99)
T cd04264 11 HAIYLSEGYNAAAIVTYEGVNNGV-PYLDKFAVSSSAQGEGTSDALWRRLRRD-------FPKLFWRSRKTNPI 76 (99)
T ss_pred eEEEEeCCceEEEEEeccCCCCCc-eEEEEEEEchhhhhcChHHHHHHHHHhh-------CCceEEEeCCCCcc
Confidence 344446777788888765432222 555 466999999999999998877653 34567777777764
No 102
>TIGR03694 exosort_acyl putative PEP-CTERM/exosortase system-associated acyltransferase. Members of this protein family are restricted to bacterial species with the PEP-CTERM/exosortase system predicted to act in exopolysaccharide-associated protein targeting. PSI-BLAST and CDD reveal relationships to the acyltransferase family that includes N-acyl-L-homoserine lactone synthetase. Several members of this family may be found in a single genome. These proteins likely contribute to chemical modifications in exopolysaccharide and biofilm structural material production.
Probab=95.54 E-value=0.39 Score=34.43 Aligned_cols=83 Identities=10% Similarity=0.101 Sum_probs=58.7
Q ss_pred cEEEEEE--CCeeEEEEEEEecC---C-------------------C-----CCceEEEE-EEECcCccCc-C-------
Q 029943 70 WFMAICV--NNRAIGAISVSANQ---G-------------------N-----DKCRGEIG-YVLGSKYWGK-G------- 111 (185)
Q Consensus 70 ~~~~i~~--~~~~vG~~~~~~~~---~-------------------~-----~~~~~~~~-~~v~~~~rg~-G------- 111 (185)
..+++.. +|++||++-+.... + . ....+|++ ++|++++|++ |
T Consensus 56 ~h~l~~~~~~g~vvG~~RLl~t~~~~p~~~~p~e~~~~~~~~~~~~~~~~~~~~~i~E~SRf~V~~~~r~r~~~~~~~~~ 135 (241)
T TIGR03694 56 VHSLLRHRRTGTFVGCVRLVLPNSSDPDQPFPFEKHCSHSLDGLFLDPRRLPRSRIAEVSRLAVSKDFRRRKGEKLKPSG 135 (241)
T ss_pred cEEEEEECCCCCEEEEEEEeccccccccccccHHHHhccccchhhcCccccCCCceEEeehheECHhHhCCccccccccc
Confidence 4555544 58999999997631 0 0 01126664 5699999873 1
Q ss_pred --------------------HHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCcee
Q 029943 112 --------------------IATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQE 157 (185)
Q Consensus 112 --------------------~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~ 157 (185)
+...|+..+.++|.+. |++.+++-+.+ +..+++++.|+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--Gi~~~~~v~~~---~l~r~l~r~G~~~~ 196 (241)
T TIGR03694 136 VGVIETEAPFSESERRRFPHIPLGLYLGLIALSSAN--GITHWYAIMEP---RLARLLSRFGIQFR 196 (241)
T ss_pred ccccccccccchhhcccCchHHHHHHHHHHHHHHHC--CCcEEEEEeCH---HHHHHHHHhCCceE
Confidence 5577999999999554 99999887766 47889999997653
No 103
>KOG2779 consensus N-myristoyl transferase [Lipid transport and metabolism]
Probab=95.04 E-value=0.16 Score=37.90 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=41.4
Q ss_pred cEEEEEE--CCeeEEEEEEEecCCCCC----ceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHh
Q 029943 70 WFMAICV--NNRAIGAISVSANQGNDK----CRGEIGYV-LGSKYWGKGIATRAVKMASDAIFA 126 (185)
Q Consensus 70 ~~~~i~~--~~~~vG~~~~~~~~~~~~----~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~ 126 (185)
+++.+.. ++++|||++..+..-.-+ .-+++.+. |+.+.|+|+++.-|++.+.+.+.-
T Consensus 135 WHiGVRv~~s~kLVaFIsaiP~~irvrdk~vk~veINFLCVHKkLRSKRlaPvLIrEITRRvnl 198 (421)
T KOG2779|consen 135 WHIGVRVKSSKKLVAFISAIPATIRVRDKVVKMVEINFLCVHKKLRSKRLAPVLIREITRRVNL 198 (421)
T ss_pred eEEEEEEecCCceEEEEeccccEEEEccceeeeeeEEEEEEehhhhccccccHHHHHHHHHhhh
Confidence 5556655 679999998765432111 11677554 999999999999999999998733
No 104
>PRK13834 putative autoinducer synthesis protein; Provisional
Probab=94.86 E-value=0.88 Score=31.85 Aligned_cols=88 Identities=13% Similarity=0.128 Sum_probs=58.5
Q ss_pred CCeeEEEEEEEecCCC------------------CCceEEEE-EEECcCcc---CcC----HHHHHHHHHHHHHHhhCCC
Q 029943 77 NNRAIGAISVSANQGN------------------DKCRGEIG-YVLGSKYW---GKG----IATRAVKMASDAIFAEWPH 130 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~------------------~~~~~~~~-~~v~~~~r---g~G----~g~~ll~~~~~~a~~~~~~ 130 (185)
+|+++|++-+-+...+ ....+|++ ++|+++++ +.+ +...|+..+.+++... |
T Consensus 62 ~g~vvG~~RLlptt~p~ml~~~fp~l~~~~~~~~~~~v~E~SRf~V~~~~~~~~~~~~~~~~~~~L~~~~~~~a~~~--G 139 (207)
T PRK13834 62 SGRVAGCARLLPAIGPTMLAQVFPQLLPAGRLNAHPAMIESSRFCVDTALAEGRGGGQLHEATLTMFAGIIEWSMAN--G 139 (207)
T ss_pred CCeEEEEEecccCCCcchhhhhcHHhcCCCCCCCCCCEEEEeeeEEcccccccccccccCHHHHHHHHHHHHHHHHC--C
Confidence 7899999887544211 11237775 56888753 222 5678999999999555 9
Q ss_pred ccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeE
Q 029943 131 LERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKT 170 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~ 170 (185)
++.+++-+.+ ...+.+++.||.....=. ....+|..
T Consensus 140 i~~~~~v~~~---~~~r~l~r~G~~~~~lG~-~~~~g~~~ 175 (207)
T PRK13834 140 YTEIVTATDL---RFERILARAGWPMQRLGE-PKAIGNTM 175 (207)
T ss_pred CCEEEEEECH---HHHHHHHHcCCCeEECCC-CEEECCeE
Confidence 9999887655 577899999987643222 22345553
No 105
>KOG2036 consensus Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.31 E-value=0.32 Score=39.94 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.1
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHH
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIF 125 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~ 125 (185)
..+.+.|+|+|++.|+|++.++.+.+|..
T Consensus 616 RIVRIAvhP~y~~MGYGsrAvqLL~~y~e 644 (1011)
T KOG2036|consen 616 RIVRIAVHPEYQKMGYGSRAVQLLTDYFE 644 (1011)
T ss_pred eEEEEEeccchhccCccHHHHHHHHHHHh
Confidence 34567799999999999999999999963
No 106
>PF01853 MOZ_SAS: MOZ/SAS family; InterPro: IPR002717 Moz is a monocytic leukemia Zn_finger protein and the SAS protein from Saccharomyces cerevisiae (Baker's yeast) is involved in silencing the Hmr locus. These proteins were reported to be homologous to acetyltransferases [] but this similarity is not supported by standard sequence analysis.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3TO6_A 1MJA_A 1MJ9_A 3TO7_A 3TO9_A 1MJB_A 1FY7_A 2OZU_A 2RC4_A 2OU2_A ....
Probab=94.29 E-value=0.38 Score=32.91 Aligned_cols=46 Identities=13% Similarity=0.153 Sum_probs=32.8
Q ss_pred eeEEEEEEEecCCCCCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 79 RAIGAISVSANQGNDKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 79 ~~vG~~~~~~~~~~~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
.+||+.+=...... ...++ +.+.|.||++|+|+-|++..-..+..+
T Consensus 66 h~vGyFSKEk~s~~---~~NLsCIl~lP~yQrkGyG~~LI~fSY~LSr~e 112 (188)
T PF01853_consen 66 HIVGYFSKEKESWD---NNNLSCILTLPPYQRKGYGRFLIDFSYELSRRE 112 (188)
T ss_dssp EEEEEEEEESS-TT----EEESEEEE-GGGTTSSHHHHHHHHHHHHHHHT
T ss_pred eeEEEEEEEecccC---CeeEeehhhcchhhhcchhhhhhhhHHHHhhcc
Confidence 58888886555432 14554 448899999999999999988887555
No 107
>COG3138 AstA Arginine/ornithine N-succinyltransferase beta subunit [Amino acid transport and metabolism]
Probab=94.13 E-value=0.34 Score=35.25 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=38.4
Q ss_pred eEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHH--------HHHhccCC-CCcEEEEEE--CCeeEEEEEEEe
Q 029943 20 ISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIK--------HIENKVIP-HPWFMAICV--NNRAIGAISVSA 88 (185)
Q Consensus 20 ~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~-~~~~~~i~~--~~~~vG~~~~~~ 88 (185)
+.+||++..|++++.++...+.. .+.. - +.+.+.... |....... ..+.+++++ .|+++|..++..
T Consensus 2 lvvRP~~~aDl~al~~LA~~sg~-G~Ts-L-P~de~~L~~Ri~~se~sf~~~~~~ge~~Y~fVLEDsetG~VvG~saI~a 78 (336)
T COG3138 2 LVVRPVERADLEALMELAVKTGV-GLTS-L-PADEATLRARIERSEKSFQGELPPGEAGYLFVLEDSETGTVVGISAIEA 78 (336)
T ss_pred cccccccccCHHHHHHHHHhcCC-Cccc-C-CCCHHHHHHHHHHHHHHHhcccCCCCccEEEEEEecCCceEEeEEEEEE
Confidence 56899999999999999865432 1111 1 112332222 22211112 235666666 799999988753
No 108
>PF04377 ATE_C: Arginine-tRNA-protein transferase, C terminus; InterPro: IPR007472 Arginine-tRNA-protein transferase catalyses the post-translational conjugation of arginine to the N terminus of a protein. In eukaryotes, this functions as part of the N terminus rule pathway of protein degradation by conjugating a destabilising amino acid to the N-terminal aspartate or glutamate of a protein, targeting the protein for ubiquitin-dependent proteolysis. N-terminal cysteine is sometimes modified []. In Saccharomyces cerevisiae, Cys20, 23, 94 and/or 95 are thought to be important for activity []. Of these, only Cys 94 appears to be completely conserved in this family. This entry represents the C-terminal region of the enzyme arginine-tRNA-protein transferase, found in both eukaryotic and prokaryotic enzymes.; GO: 0004057 arginyltransferase activity, 0016598 protein arginylation
Probab=93.85 E-value=1.1 Score=28.81 Aligned_cols=98 Identities=13% Similarity=0.085 Sum_probs=66.3
Q ss_pred CHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCcc
Q 029943 53 SREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLE 132 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~ 132 (185)
+.++...++..... .........+|++||.+.+...+..- --+-.+-+|++....+|+-.+-..+++|+ +. |++
T Consensus 24 ~~~~y~~fl~~~~~-~t~~~~~~~~~kLiav~v~D~l~~gl---SaVY~fyDPd~~~~SlG~~~iL~eI~~a~-~~-~l~ 97 (128)
T PF04377_consen 24 SQEQYRRFLCSSPL-GTYHLEYRLDGKLIAVAVVDILPDGL---SAVYTFYDPDYSKRSLGTYSILREIELAR-EL-GLP 97 (128)
T ss_pred CHHHHHHHHhCCCC-CCEEEEEEeCCeEEEEEEeecccchh---hheeeeeCCCccccCcHHHHHHHHHHHHH-Hc-CCC
Confidence 46777777775543 23344444599999998877765322 22335579999999999999999999994 45 999
Q ss_pred EEEEEeeccChhhHHHHHHcCCceee
Q 029943 133 RLEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
-+++.-...+- .++-=|..|++..
T Consensus 98 y~YLGY~I~~c--~kM~YK~~f~P~e 121 (128)
T PF04377_consen 98 YYYLGYWIHGC--PKMNYKARFRPHE 121 (128)
T ss_pred EEeeCeEeCCC--CcccchhcCCcee
Confidence 99986655543 2333445555433
No 109
>PRK01305 arginyl-tRNA-protein transferase; Provisional
Probab=93.79 E-value=1.8 Score=31.09 Aligned_cols=99 Identities=12% Similarity=0.067 Sum_probs=67.8
Q ss_pred CHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCcc
Q 029943 53 SREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLE 132 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~ 132 (185)
+.++...|+...... ........+|++||.+.+...+..- --+-.+-+|++-..++|+-.+-.-+++| ++. |..
T Consensus 129 ~~~~y~~Fl~~~~~~-t~~~ey~~~g~LiaVav~D~l~d~l---SAVY~FyDPd~~~~SLG~~~iL~qI~~a-k~~-gl~ 202 (240)
T PRK01305 129 SRDQYAQFLEDSWVN-TRFIEFRGDGKLVAVAVTDVLDDGL---SAVYTFYDPDEEHRSLGTFAILWQIELA-KRL-GLP 202 (240)
T ss_pred CHHHHHHHHhcCCCC-cEEEEEEeCCeEEEEEEEeccCCce---eeEEEeeCCCccccCCHHHHHHHHHHHH-HHc-CCC
Confidence 677778888765432 2333333499999999887765321 3334567999999999999999999999 555 999
Q ss_pred EEEEEeeccChhhHHHHHHcCCceeee
Q 029943 133 RLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
-+++.-...+-+ ++-=|.-|++...
T Consensus 203 y~YLGY~I~~c~--kM~YK~~f~P~E~ 227 (240)
T PRK01305 203 YVYLGYWIKGSR--KMNYKARFRPLEI 227 (240)
T ss_pred eEeeeEEECCCC--cccccccCCccee
Confidence 999977665533 3334455555443
No 110
>KOG4601 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.55 E-value=0.19 Score=35.18 Aligned_cols=51 Identities=6% Similarity=-0.010 Sum_probs=35.7
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHc
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKA 152 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~ 152 (185)
+.+.|+|.++.|++|.|.++++.+++- +.. ..++ +.++.--...++|.+|.
T Consensus 110 cILDFyVheS~QR~G~G~~lfdyMl~k--E~v-ephQ--~a~DrPS~kLl~Fm~kh 160 (264)
T KOG4601|consen 110 CILDFYVHESEQRSGNGFKLFDYMLKK--ENV-EPHQ--CAFDRPSAKLLQFMEKH 160 (264)
T ss_pred eEEEEEeehhhhhcCchHHHHHHHHHh--cCC-Cchh--eeccChHHHHHHHHHHh
Confidence 888999999999999999999988874 332 2332 33333334566777664
No 111
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=93.25 E-value=0.12 Score=39.28 Aligned_cols=59 Identities=8% Similarity=0.168 Sum_probs=34.6
Q ss_pred CCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHh
Q 029943 68 HPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFA 126 (185)
Q Consensus 68 ~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~ 126 (185)
+++.|.|.....-.|++++...+........++.. +.|.||++|+|+-|++.--.....
T Consensus 232 dpFlFYVlte~d~~G~VGYFSKEK~s~~~yNlaCILtLPpyQRkGYGklLIdFSYeLSr~ 291 (396)
T KOG2747|consen 232 DPFLFYVLTECDSYGCVGYFSKEKESSENYNLACILTLPPYQRKGYGKLLIDFSYELSRR 291 (396)
T ss_pred cceEEEEEEecCCcceeeeeccccccccccceeeeeecChhhhcccchhhhhhhhhhhcc
Confidence 34555555522223444444444333222556544 899999999999888876665533
No 112
>cd04265 DUF619-NAGS-U DUF619 domain of various N-acetylglutamate Synthases (NAGS) of the urea (U) cycle of humans and fish. This family includes the DUF619 domain of various N-acetylglutamate synthases (NAGS) of the urea cycle found in humans and fish, the DUF619 domain of the NAGS of the fungal arginine-biosynthetic pathway (FABP), as well as the DUF619 domain present in C-terminal of a NAG kinase-like domain in a limited number of predicted NAGSs found in bacteria and Dictyostelium. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate. NAGS is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Domain architecture of ureogenic and fungal NAGS consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. The DUF619 domain function has yet to be characterized.
Probab=92.84 E-value=1.4 Score=26.97 Aligned_cols=62 Identities=15% Similarity=0.075 Sum_probs=40.1
Q ss_pred EEECCeeEEEEEEEecCCCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChh
Q 029943 74 ICVNNRAIGAISVSANQGNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVG 144 (185)
Q Consensus 74 i~~~~~~vG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~ 144 (185)
+..++..=|++.+.+..+ +.. +.+ -+.|.++.||+|+|..++..+.+- ..++...+.++|+.
T Consensus 14 ~y~~e~y~~~aivt~~~~-~~~-~yLdKfaV~~~~~g~gv~d~vf~~i~~d-------~~~L~Wrsr~~n~~ 76 (99)
T cd04265 14 IYLSEGYNAAAIVTNEEV-DGV-PYLDKFAVSSSAQGEGTGEALWRRLRRD-------FPKLFWRSRSTNPI 76 (99)
T ss_pred EEEeCCCcEEEEEeccCC-CCc-eEEEEEEEchhhhhcChHHHHHHHHHhh-------CCceEEEeCCCCcc
Confidence 333554556666655432 122 455 466999999999999988876653 24577777777764
No 113
>PLN03238 probable histone acetyltransferase MYST; Provisional
Probab=92.28 E-value=0.93 Score=33.13 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=34.0
Q ss_pred CeeEEEEEEEecCCCCCceEEEEE-EECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 78 NRAIGAISVSANQGNDKCRGEIGY-VLGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 78 ~~~vG~~~~~~~~~~~~~~~~~~~-~v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
..+||+.+=....... ..++. .+.|.||++|+|+-|++..-+.+..+
T Consensus 140 ~h~vGYFSKEK~s~~~---nNLaCIltLPpyQrkGyG~~LI~fSYeLSr~E 187 (290)
T PLN03238 140 SHIVGYFSKEKVSAED---YNLACILTLPPYQRKGYGKFLISFAYELSKRE 187 (290)
T ss_pred cEEEEEeceeccccCC---CcEEEEEecChhhhccHhHhHHHHHhHHhhcc
Confidence 3688987766554321 44544 47899999999999998887776444
No 114
>KOG2696 consensus Histone acetyltransferase type b catalytic subunit [Chromatin structure and dynamics]
Probab=91.88 E-value=0.49 Score=35.66 Aligned_cols=56 Identities=13% Similarity=0.169 Sum_probs=37.7
Q ss_pred eEEEEEEEecCCCC-CceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEE
Q 029943 80 AIGAISVSANQGND-KCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEA 136 (185)
Q Consensus 80 ~vG~~~~~~~~~~~-~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~ 136 (185)
++|+..+.....-. ...+.+ .+.|.|.||++|+|+.+++.+........ .+-.+++
T Consensus 200 ~~gy~tiyk~y~yid~~R~RiSQmlilpPfq~~Glgs~l~E~i~r~~~~~p-~v~DiTV 257 (403)
T KOG2696|consen 200 YVGYYTIYKFYEYIDRIRPRISQMLILPPFQGKGLGSQLYEAIARDYLEEP-TVLDITV 257 (403)
T ss_pred eeeeEEEeehhhhhhhhhhhhheeEEeccccCCchHHHHHHHHHHhhccCC-ceeEEEe
Confidence 67777777655422 222444 46689999999999999999997653443 5444444
No 115
>PRK14852 hypothetical protein; Provisional
Probab=91.28 E-value=1.7 Score=37.50 Aligned_cols=139 Identities=10% Similarity=0.011 Sum_probs=85.3
Q ss_pred CceEeecCC-ccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccC-CCCcEEEEEECCeeEEEEEEEecCCC---
Q 029943 18 SDISLRPMD-LSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVI-PHPWFMAICVNNRAIGAISVSANQGN--- 92 (185)
Q Consensus 18 ~~~~ir~~~-~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~vG~~~~~~~~~~--- 92 (185)
+++.||.++ .+|+..++.|..+..+..-+. .+..+ ...+..+.. +....|+.-..+.++|...+...+..
T Consensus 27 dr~~~r~Aet~~e~~~~~~L~~~~Y~~~Gy~-~~~ps----~~~~~~~~~lp~t~~~i~k~~~~~l~T~t~~~ds~~~Gl 101 (989)
T PRK14852 27 DRPAIKIAETPDEYTRAFRLVYEEYIRSGYL-KPHPS----RMYYNVWSILPATSVFIFKSYHDVLCTLTHIPDSGLFGL 101 (989)
T ss_pred cCcceeecCCHHHHHHHHHHHHHHHHHcCCC-CcCcc----cccCCccccCCcceEEEeccCCcEEEEEEEecCCcccCc
Confidence 578888885 558999999887655433221 11111 111111111 12223444345667777766665442
Q ss_pred ----------------CCceEEEE-EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHH-HcCC
Q 029943 93 ----------------DKCRGEIG-YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLL-KAGF 154 (185)
Q Consensus 93 ----------------~~~~~~~~-~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~-k~Gf 154 (185)
....++++ +.++++.+.+-+--.+++.+..|+. .. +++.+...|.| .-..||+ -+||
T Consensus 102 ~~D~lf~~eLd~lr~~Gr~v~EvtrLa~d~~~~~~~l~~~l~~~~~~y~~-~~-~~dd~~i~VnP---kH~~FY~r~l~f 176 (989)
T PRK14852 102 PMDTLYKPEVDALRAQGRNVVEVGALATQYSRRWTNLMVFLAKAMFQYSM-MS-EVDDILVTVNP---KHVKFYTDIFLF 176 (989)
T ss_pred CHHHHHHHHHHHHHHcCCeEEeeehheechhhcccchhHHHHHHHHHHHH-Hc-CCCeEEEEECc---chHHHHHHHhCC
Confidence 11126664 4477888877777788888888874 45 88888888754 5788999 6899
Q ss_pred ceeeeeeeeeec
Q 029943 155 MQEGVLRKYFIH 166 (185)
Q Consensus 155 ~~~~~~~~~~~~ 166 (185)
+..|..+.+-..
T Consensus 177 ~~ig~~r~~p~V 188 (989)
T PRK14852 177 KPFGEVRHYDTV 188 (989)
T ss_pred ccccccccCCCC
Confidence 999987665443
No 116
>PF11090 DUF2833: Protein of unknown function (DUF2833); InterPro: IPR020335 This entry contains proteins with no known function.
Probab=91.12 E-value=0.95 Score=26.67 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.3
Q ss_pred ccEEEEEeeccChhhHHHHHHcCCceee
Q 029943 131 LERLEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
...++-.|..+|..+++|++.+|++...
T Consensus 56 Y~~l~N~V~~~N~~HIRfLk~lGA~f~~ 83 (86)
T PF11090_consen 56 YPVLWNFVWVGNKSHIRFLKSLGAVFHN 83 (86)
T ss_pred hhheeEEEEeCCHHHHHHHHhcCcEEcc
Confidence 4568899999999999999999998543
No 117
>PF09924 DUF2156: Uncharacterized conserved protein (DUF2156); InterPro: IPR024320 This domain of unknown function is found in uncharacterised proteins and in Lysylphosphatidylglycerol synthetase, which catalyses the transfer of a lysyl group from L-lysyl-tRNA(Lys) to membrane-bound phosphatidylglycerol [].; PDB: 2HQY_A.
Probab=90.65 E-value=2.1 Score=31.74 Aligned_cols=111 Identities=14% Similarity=0.001 Sum_probs=58.8
Q ss_pred eEeecC---CccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEE-CCeeEEEEEEEecCCCCCc
Q 029943 20 ISLRPM---DLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICV-NNRAIGAISVSANQGNDKC 95 (185)
Q Consensus 20 ~~ir~~---~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~vG~~~~~~~~~~~~~ 95 (185)
+.+.+. ++++.+.+.++..+... ........-....+......+...+++.. +|+++|++.+.+... ..
T Consensus 133 ~~~~~~~~~~~~~~~el~~i~~~W~~-----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~dgki~af~~~~~~~~-~~- 205 (299)
T PF09924_consen 133 FEVVPIPELDPELRDELLEISDEWLK-----EKERPERGFIMGALEHFDELGLRGFVARVADGKIVAFAIGSPLGG-RD- 205 (299)
T ss_dssp -EEEE-----GGGHHHHHHHHHHHHH-----HCTHHHHHHHHHHHHTHHHHT-EEEEEEE-TTEEEEEEEEEEEE--TT-
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHh-----cCchhHHHHHhccccchhhcCceEEEEEECCCcEEEEEEEEEccC-Cc-
Confidence 566666 67777777776432111 01000122223333333333456777777 999999999999873 22
Q ss_pred eEEEEEEE-CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec
Q 029943 96 RGEIGYVL-GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV 140 (185)
Q Consensus 96 ~~~~~~~v-~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~ 140 (185)
.+.+.+.- +++ --+|+-..|+..+++.+.++ |+..|.+...+
T Consensus 206 ~~~~~~~k~~~~-a~~G~~e~l~~~~~~~~~~~--g~~~lnLg~ap 248 (299)
T PF09924_consen 206 GWSIDFEKADPD-APKGIYEFLNVEFAEHLKAE--GVEYLNLGFAP 248 (299)
T ss_dssp EEEEEEEEE-TT--STTHHHHHHHHHHHHS--T--T--EEE-----
T ss_pred cEEEEEEecCCC-CCCcHHHHHHHHHHHhhhhC--CceEEEccccc
Confidence 25544553 344 34789999999999998545 88888854433
No 118
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=90.61 E-value=2.6 Score=29.51 Aligned_cols=67 Identities=13% Similarity=0.082 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEeec
Q 029943 111 GIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLL 179 (185)
Q Consensus 111 G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~ 179 (185)
|.|-.++..+++......+...++.+....+...-+++...+||....+ ..+.-+|+++..+.-...
T Consensus 74 GMGG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L~~~gf~I~~E--~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 74 GMGGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWLYENGFEIIDE--DLVEENGRFYEIIVAERG 140 (205)
T ss_dssp EE-HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHHHHTTEEEEEE--EEEEETTEEEEEEEEEES
T ss_pred cCCHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHHHHCCCEEEEe--EEEeECCEEEEEEEEEeC
Confidence 8888899999988766543567888888888889999999999999886 344567888876665543
No 119
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=90.13 E-value=0.78 Score=33.91 Aligned_cols=139 Identities=14% Similarity=0.020 Sum_probs=77.5
Q ss_pred CceEeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccC--CCC--cEEEEEE-CCeeEEEEEEEecCCC
Q 029943 18 SDISLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVI--PHP--WFMAICV-NNRAIGAISVSANQGN 92 (185)
Q Consensus 18 ~~~~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~i~~-~~~~vG~~~~~~~~~~ 92 (185)
..--+|+++..|.+++.+++.+.. .+|. .....+.+++..++.-... +.+ +.+++.. +|++-+|.+++..+..
T Consensus 257 kt~GlR~~e~kD~~~v~~L~~~y~-~Rfe-l~~~f~~Eei~h~F~~~~~v~~~~v~~syvVe~p~gkItdFfsFyslp~t 334 (451)
T COG5092 257 KTEGLRLAEEKDMEDVARLYLEYS-RRFE-LYEEFRFEEIVHTFRPVKNVVDKQVTYSYVVEEPNGKITDFFSFYSLPFT 334 (451)
T ss_pred CCcccchhhhhCHHHHHHHHHHHH-HHHH-HHHHHhHHHHHhhcccccccccCceEEEEEEeCCCCccccceEEEeccce
Confidence 344689999999999999986421 1211 1122355666666553322 223 3334444 8899999998876521
Q ss_pred ----CCc-e---EEEEEEECcCccCcCHH-----------HHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcC
Q 029943 93 ----DKC-R---GEIGYVLGSKYWGKGIA-----------TRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAG 153 (185)
Q Consensus 93 ----~~~-~---~~~~~~v~~~~rg~G~g-----------~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~G 153 (185)
... . +.+.++ +.+-+-+.+- .+++--++..|. .. +++..-+-+..+|.- |+..++
T Consensus 335 ~i~n~kykdiq~gYLYYy-a~d~~~kd~~~~a~~a~~~r~~e~v~Da~ilak-~~-~~DVFNalt~~dN~l---FL~dLk 408 (451)
T COG5092 335 TIENKKYKDIQGGYLYYY-AGDDQFKDFDPKATKALKTRVAEMVGDAMILAK-VE-GCDVFNALTMMDNSL---FLADLK 408 (451)
T ss_pred eecCccccccceeEEEEE-ccCccccccChHHHHHHHHHHHHHHHHHHHHHH-Hc-CCchhhhhhhccchh---HHHhcC
Confidence 111 1 333233 2222222222 234445555663 34 888888878888754 889999
Q ss_pred Cceeeeeeeee
Q 029943 154 FMQEGVLRKYF 164 (185)
Q Consensus 154 f~~~~~~~~~~ 164 (185)
|-.-.-+-+++
T Consensus 409 Fg~GdGflnyY 419 (451)
T COG5092 409 FGCGDGFLNYY 419 (451)
T ss_pred ccCCCceeEEE
Confidence 97654444443
No 120
>PTZ00064 histone acetyltransferase; Provisional
Probab=90.12 E-value=0.91 Score=35.81 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=33.2
Q ss_pred eeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 79 RAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 79 ~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
.+||+.+=....... ..++.+ +.|.||++|+|+-|++..-.....+
T Consensus 370 HiVGYFSKEK~S~~~---nNLACILtLPpyQRKGYGklLIdfSYeLSrrE 416 (552)
T PTZ00064 370 HIVGYFSKEKVSLLH---YNLACILTLPCYQRKGYGKLLVDLSYKLSLKE 416 (552)
T ss_pred EEEEEecccccCccc---CceEEEEecchhhhcchhhhhhhhhhhhhhhc
Confidence 788887765554322 445544 7899999999999998877776444
No 121
>PLN03239 histone acetyltransferase; Provisional
Probab=89.84 E-value=1.2 Score=33.50 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=32.7
Q ss_pred eeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 79 RAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 79 ~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
.+||+.+=....... ..++.. +.|.||++|+|+-|++..-+.+..+
T Consensus 199 h~vGYFSKEK~s~~~---~NLaCIltLPpyQrkGyG~lLI~fSYeLSr~E 245 (351)
T PLN03239 199 HPVGYYSKEKYSDVG---YNLACILTFPAHQRKGYGRFLIAFSYELSKKE 245 (351)
T ss_pred EEEEEeeecccCCCC---CceEEEEecChhhhcchhhhhHhhhhHhhhhc
Confidence 688887665544321 445544 7899999999999998877776444
No 122
>PF11124 Pho86: Inorganic phosphate transporter Pho86; InterPro: IPR024297 Pho86p is an ER protein which is produced in response to phosphate starvation. It is essential for growth when phosphate levels are limiting []. Pho86p is also involved in the regulation of Pho84p, a high-affinity phosphate transporter, which is localised to the endoplasmic reticulum (ER) in low phosphate medium. When the level of phosphate increases Pho84p is transported to the vacuole. Pho86p is required for packaging of Pho84p in to COPII vesicles [].
Probab=88.48 E-value=8.4 Score=28.59 Aligned_cols=89 Identities=21% Similarity=0.148 Sum_probs=65.7
Q ss_pred cEEEEEECCeeEEEEEEEecCCCCCce---EEE-EEEECcCccCcCHHHHHHHHHHHHHHh---hC-----CCccEEEEE
Q 029943 70 WFMAICVNNRAIGAISVSANQGNDKCR---GEI-GYVLGSKYWGKGIATRAVKMASDAIFA---EW-----PHLERLEAL 137 (185)
Q Consensus 70 ~~~~i~~~~~~vG~~~~~~~~~~~~~~---~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~---~~-----~~~~~i~~~ 137 (185)
...+|...+.||+.+.+.+........ ..+ |+.+..-|..-|+-..|+++++-.+++ ++ .+-=.+...
T Consensus 170 NT~IIvYRetPIAiisl~~~~~~St~~~~vv~ItgigvRkVy~Ksgi~e~LidWA~~Rtr~l~~ey~k~k~~~si~ll~d 249 (304)
T PF11124_consen 170 NTHIIVYRETPIAIISLVPNKDQSTKENFVVKITGIGVRKVYVKSGIDEDLIDWAMLRTRQLYKEYLKGKKGCSIKLLVD 249 (304)
T ss_pred cceEEEEcCCceEEEEeccccccCCCceEEEEEeeeEEEEEEeecChHHHHHHHHHHHHHHHHHHhccccccceEEEEEE
Confidence 455677799999999999876543221 233 566889999999999999888655533 21 012246678
Q ss_pred eeccChhhHHHHHHcCCceee
Q 029943 138 VDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 138 ~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
+.+......+.+++.||....
T Consensus 250 ~YSFD~~~~k~L~~~gF~~i~ 270 (304)
T PF11124_consen 250 VYSFDKDMKKTLKKKGFKKIS 270 (304)
T ss_pred eeeccHHHHHHHHHCCCeeee
Confidence 899999999999999999887
No 123
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=88.16 E-value=10 Score=29.22 Aligned_cols=125 Identities=13% Similarity=0.050 Sum_probs=73.5
Q ss_pred CCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEEEE-E
Q 029943 25 MDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIGYV-L 103 (185)
Q Consensus 25 ~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~-v 103 (185)
+++++++.++.++.+.....+ ..+..+.+-+....+.. .+....+++..+|++||+..+...... ..-.++ .
T Consensus 210 i~~~~~~~f~~~Y~~Ty~k~~--~~~yLt~~FF~~l~~~m-~~~~~l~~A~~~g~~Va~aL~l~~~~~----LyGRYwG~ 282 (370)
T PF04339_consen 210 ITDEDWDRFYRLYQNTYAKRW--GRPYLTREFFEQLAETM-PEQVVLVVARRDGQPVAFALCLRGDDT----LYGRYWGC 282 (370)
T ss_pred CCHHHHHHHHHHHHHHHHhhC--CChhhcHHHHHHHHHhC-cCCEEEEEEEECCeEEEEEEEEEeCCE----EEEeeecc
Confidence 456677888888876443332 24444555555544443 323333444449999999988887532 111122 3
Q ss_pred CcCccCcCHHHH-HHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeec
Q 029943 104 GSKYWGKGIATR-AVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIH 166 (185)
Q Consensus 104 ~~~~rg~G~g~~-ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~ 166 (185)
..++.+ +=-+ +--..+++|.++ |++++...+--+.+ -..||.++.+...+...
T Consensus 283 ~~~~~~--LHFe~cYYq~Ie~aI~~--Gl~~f~~GaqGEHK------~~RGf~P~~t~S~H~~~ 336 (370)
T PF04339_consen 283 DEEIPF--LHFELCYYQGIEYAIEH--GLRRFEPGAQGEHK------IARGFEPVPTYSAHWIA 336 (370)
T ss_pred cccccC--cchHHHHHHHHHHHHHc--CCCEEECCcchhHH------HHcCCccccceeeeeeC
Confidence 444433 3333 455788999777 99998877543322 35699988887665543
No 124
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=87.99 E-value=0.87 Score=35.54 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=32.7
Q ss_pred eeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 79 RAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 79 ~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
.+||+.+=....... ..++.+ +.|.||++|+|+-|++..-+....+
T Consensus 292 h~vGyFSKEk~s~~~---~NLaCIltlP~yQrkGyG~~LI~~SYeLSr~e 338 (450)
T PLN00104 292 HMVGYFSKEKHSEED---YNLACILTLPPYQRKGYGKFLIAFSYELSKRE 338 (450)
T ss_pred EEEEEecccccCcCC---CceEEEEecchhhhcchhheehhheehhhhcc
Confidence 789987766554332 345544 7899999999998888776665443
No 125
>PF02474 NodA: Nodulation protein A (NodA); InterPro: IPR003484 Rhizobial nodulation (Nod) factors are signalling molecules secreted by root-nodulating rhizobia in response to flavanoids excreted by the host plant. They induce various symbiotic responses on the roots of the leguminous host plant at low concentrations, and are required for successful infection. Rhizobial Nod factors are lipo-chitooligosaccharides carrying various substituents which are important determinants of host specificity []. NodA is an N-acyl transferase which specifies the transfer of an acyl chain to the oligosaccharide backbone of Nod factor. Allelic variation of the nodA gene can contribute to the determination of host range [].; GO: 0016746 transferase activity, transferring acyl groups
Probab=87.18 E-value=1.4 Score=29.63 Aligned_cols=51 Identities=14% Similarity=0.115 Sum_probs=40.0
Q ss_pred EEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcC
Q 029943 97 GEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAG 153 (185)
Q Consensus 97 ~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~G 153 (185)
+++|++ |.|+.+|.||+..+ ..+.-.+ +++ ++..-+..|.. +.++.+++++
T Consensus 86 aElGLygVRpDLEGlGi~hs~-r~m~PvL-q~L-gVPF~FGtVR~---al~~Hv~R~~ 137 (196)
T PF02474_consen 86 AELGLYGVRPDLEGLGISHSM-RVMYPVL-QEL-GVPFGFGTVRH---ALRNHVERLC 137 (196)
T ss_pred EEEEEEEeeccccccccchhh-hhhhhHH-Hhc-CCCeecccchH---HHHHHHHHHh
Confidence 899988 99999999999876 4666665 777 99988887765 4677777765
No 126
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.55 E-value=10 Score=26.53 Aligned_cols=87 Identities=13% Similarity=0.224 Sum_probs=58.0
Q ss_pred CCcEEEE-EECCeeEEEEEEEecCCC------------------CCceEEEE-EEECc--CccC---cC-HHHHHHHHHH
Q 029943 68 HPWFMAI-CVNNRAIGAISVSANQGN------------------DKCRGEIG-YVLGS--KYWG---KG-IATRAVKMAS 121 (185)
Q Consensus 68 ~~~~~~i-~~~~~~vG~~~~~~~~~~------------------~~~~~~~~-~~v~~--~~rg---~G-~g~~ll~~~~ 121 (185)
+..+.++ ..+|+++|++-+-+...+ ....+|.+ |+|++ .-++ .. .+.+++.-++
T Consensus 51 ~t~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~~~a~~~~g~~~~a~~el~~g~i 130 (209)
T COG3916 51 DTVYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDKPSARRAAGGVSPAAYELFAGMI 130 (209)
T ss_pred CceEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeeccccchhhcCCccHHHHHHHHHHH
Confidence 3344444 238999999998653222 11226665 44554 2222 22 3678999999
Q ss_pred HHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 122 DAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 122 ~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+++.+. |+++|..-+.. ...+.++++||..+..
T Consensus 131 e~a~~~--G~~~IvtVt~~---~meril~r~Gw~~~ri 163 (209)
T COG3916 131 EYALAR--GITGIVTVTDT---GMERILRRAGWPLTRI 163 (209)
T ss_pred HHHHHc--CCceEEEEEch---HHHHHHHHcCCCeEEc
Confidence 999554 99999887755 5999999999987665
No 127
>PF04768 DUF619: Protein of unknown function (DUF619); InterPro: IPR006855 This region of unknown function is found at the C terminus of Neurospora crassa acetylglutamate synthase (2.7.2.8 from EC). It is also found C-terminal to the amino acid kinase region in some fungal acetylglutamate kinase enzymes (IPR001048 from INTERPRO). These enzymes play a role in arginine biosynthesis.; PDB: 3S6K_A 4AB7_F 3ZZF_B 3ZZI_D 3ZZH_A 3ZZG_A 3S6G_Y 3S6H_A 3S7Y_A.
Probab=84.97 E-value=9.7 Score=25.81 Aligned_cols=104 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred CCcc-CHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecC-CCCCceEEE-EE
Q 029943 25 MDLS-DVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQ-GNDKCRGEI-GY 101 (185)
Q Consensus 25 ~~~~-D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~-~~~~~~~~~-~~ 101 (185)
.+.- |.+.|.+++.++. ....+.+.....++... . .+..+|..-|.+.+.+.. ......+.+ -+
T Consensus 28 ~~~~~d~~kL~~ll~~sf-------~~~~~v~~yl~~l~~~~-----~-~iy~d~~y~~~AIVt~e~~~~~~~v~yLdKF 94 (170)
T PF04768_consen 28 LSEFVDLDKLRALLERSF-------GGKLDVDHYLDRLNNRL-----F-KIYVDEDYEGAAIVTPEGPDSNGPVPYLDKF 94 (170)
T ss_dssp CCCSS-HHHHHHHHHHHS-------TSSSBHTTHHHHHHTS------S-EEEEETTSSEEEEEEEE-SCTCTSEEEEEEE
T ss_pred ccccCCHHHHHHHHHhcc-------cccccHHHHHHHhhccc-----e-EEEEeCCceEEEEEEecCCCCCCCCeEEEEE
Confidence 4444 8888998887553 22234444444443321 2 233345455666665522 122222555 46
Q ss_pred EECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHH
Q 029943 102 VLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVL 149 (185)
Q Consensus 102 ~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y 149 (185)
.|.+..||.|++-.++..+.+ .. .++...+..+|+- .++|
T Consensus 95 av~~~~~g~gv~D~vf~~i~~----d~---p~L~Wrsr~~n~~-~~Wy 134 (170)
T PF04768_consen 95 AVSKSAQGSGVADNVFNAIRK----DF---PKLFWRSREDNPN-NKWY 134 (170)
T ss_dssp EE-HHHHHTTHHHHHHHHHHH----H----SSEEEEEETT-TT-HHHH
T ss_pred EecchhhhcCHHHHHHHHHHH----hc---cceEEEecCCCCc-ccEE
Confidence 699999999999999888743 32 3477888887764 4554
No 128
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=84.84 E-value=0.54 Score=36.55 Aligned_cols=56 Identities=16% Similarity=0.175 Sum_probs=37.9
Q ss_pred EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEE-----eeccChhhHHHHHHcCCceee
Q 029943 101 YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEAL-----VDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~-----~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
..|+|+||+-|+|...+..+++|..+. .+....-. +...-..=..|+++.||....
T Consensus 247 vvvhpdyr~dglg~~sv~~a~ewI~eR--riPEmr~rkHlvetiaqmarynpffe~~gfkylw 307 (593)
T COG2401 247 VVVHPDYRADGLGQLSVIAALEWIIER--RIPEMRPRKHLVETIAQMARYNPFFEKVGFKYLW 307 (593)
T ss_pred EEeccccccCccchhHHHHHHHHHHHh--hChhhhhhhhHHHHHHHHHhcCchhhhhceeeee
Confidence 558999999999999999999999665 45443322 001111123588999997643
No 129
>COG5092 NMT1 N-myristoyl transferase [Lipid metabolism]
Probab=84.74 E-value=4.3 Score=30.22 Aligned_cols=102 Identities=10% Similarity=0.172 Sum_probs=60.5
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCC----cEEEEEE--CCeeEEEEEEEecCC---
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHP----WFMAICV--NNRAIGAISVSANQG--- 91 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~--~~~~vG~~~~~~~~~--- 91 (185)
+|.-.....+++++.++....+..-..... ..-..+|++....... ++.++.. ..++|||++..+..-
T Consensus 83 ~idv~N~~ql~dv~~lL~eNYVED~~ag~r---f~Y~~EFl~Wal~~pg~kK~whigvRvk~t~klVaFIsa~p~~v~vR 159 (451)
T COG5092 83 VIDVANKKQLEDVFVLLEENYVEDIYAGHR---FRYSVEFLQWALDGPGGKKRWHIGVRVKGTQKLVAFISAKPHLVSVR 159 (451)
T ss_pred eEeccccchhHHHHHHHHhhhhhhhhhhhH---HHHHHHHHHHhhcCCCCceeeEEEEEEcccceeEEEEecceeEEEEc
Confidence 344445556777777776543332221111 1112344444443222 5555555 458999998765432
Q ss_pred --CCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHh
Q 029943 92 --NDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFA 126 (185)
Q Consensus 92 --~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~ 126 (185)
.... .++.+. |+.+.|++.+..-|++.+.+.+..
T Consensus 160 gK~~~~-~evNFLCihk~lRsKRltPvLIkEiTRR~n~ 196 (451)
T COG5092 160 GKRSSV-LEVNFLCIHKELRSKRLTPVLIKEITRRANV 196 (451)
T ss_pred cccccc-ceEEEEEEehhhhhCccchHHHHHHHHhhhh
Confidence 1222 666555 999999999999999999998843
No 130
>PF02100 ODC_AZ: Ornithine decarboxylase antizyme; InterPro: IPR002993 Ornithine decarboxylase antizyme (ODC-AZ) [] binds to, and destabilises, ornithine decarboxylase (ODC), a key enzyme in polyamine synthesis. ODC is then rapidly degraded. The expression of ODC-AZ requires programmed, ribosomal frameshifting which is modulated according to the cellular concentration of polyamines. High levels of polyamines induce a +1 ribosomal frameshift in the translation of mRNA for the antizyme leading to the expression of a full-length protein. At least two forms of ODC-AZ exist in mammals [] and the protein has been found in Drosophila (protein Gutfeeling).; GO: 0004857 enzyme inhibitor activity, 0008073 ornithine decarboxylase inhibitor activity; PDB: 1ZO0_A.
Probab=79.49 E-value=8.5 Score=23.92 Aligned_cols=57 Identities=12% Similarity=0.113 Sum_probs=27.7
Q ss_pred EEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHH---cCCceeee
Q 029943 101 YVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLK---AGFMQEGV 159 (185)
Q Consensus 101 ~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k---~Gf~~~~~ 159 (185)
+.+.+...++| -++-+-.++++|-+.+ ++..+.+.+..+......+.+. +||+...-
T Consensus 28 V~ip~~~~~~~-~K~~lvaLLElAee~L-~c~~vvic~~k~~~d~~~Llr~l~~vGF~lv~~ 87 (108)
T PF02100_consen 28 VFIPSSALGQG-SKESLVALLELAEEKL-GCSHVVICLDKNRPDRASLLRTLMWVGFELVTP 87 (108)
T ss_dssp EE-SS---SS---SHHHHHHHHHHHHHH-----EEEEE---SS-HHHHHHHHTTT--EEE--
T ss_pred EEECCcccccc-cHHHHHHHHHHhcCcC-CCCEEEEEEECCchhHHHhhhhcEeeccEecCC
Confidence 33555555555 4778888999996678 9999999988877665555555 45665543
No 131
>PHA02769 hypothetical protein; Provisional
Probab=79.42 E-value=4.2 Score=25.32 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHH--hhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 113 ATRAVKMASDAIF--AEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 113 g~~ll~~~~~~a~--~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
|-.++..+...+. +.- |+..+..--.++ .|.++|.|.||..+|..
T Consensus 94 gd~lvnfl~~l~~k~~~d-g~evlwtlgfpd--hsnaly~kagfk~vg~t 140 (154)
T PHA02769 94 GDHLVNFLNDLAEKLKKD-GFEVLWTLGFPD--HSNALYKKAGFKLVGQT 140 (154)
T ss_pred hHHHHHHHHHHHHHHhcC-CeEEEEEecCCC--cchhHHhhhhhhHhccc
Confidence 3445555544432 233 666665555565 47889999999998864
No 132
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=76.37 E-value=3.4 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=32.6
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceee
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
+|+|.+-.+.++-||++.. ++.-..-+++++.++|+..+.
T Consensus 121 KGIG~ETaDsILlYa~~rp---------~FVvD~Yt~R~l~rlg~i~~k 160 (215)
T COG2231 121 KGIGKETADSILLYALDRP---------VFVVDKYTRRLLSRLGGIEEK 160 (215)
T ss_pred CCcchhhHHHHHHHHhcCc---------ccchhHHHHHHHHHhcccccc
Confidence 7999999999999997663 233446789999999998764
No 133
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=75.08 E-value=1.5 Score=32.95 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=25.5
Q ss_pred eeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHH
Q 029943 79 RAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMA 120 (185)
Q Consensus 79 ~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~ 120 (185)
.+||+.+=...+..+ ..++.. +.|.||++|+|+-|++.-
T Consensus 248 h~vGyFSKEK~S~~~---yNLaCILtLP~yQRrGYG~lLIdFS 287 (395)
T COG5027 248 HLVGYFSKEKESEQD---YNLACILTLPPYQRRGYGKLLIDFS 287 (395)
T ss_pred eeeeeechhhccccc---CceEEEEecChhHhcccceEeeeee
Confidence 377776654443321 455544 789999999999666543
No 134
>PF13444 Acetyltransf_5: Acetyltransferase (GNAT) domain
Probab=74.85 E-value=16 Score=22.12 Aligned_cols=51 Identities=12% Similarity=0.180 Sum_probs=31.8
Q ss_pred CCCcEEEEEECCe-eEEEEEEEecCCCC--------------------CceEEEE-EEECcCccCcCHHHHHH
Q 029943 67 PHPWFMAICVNNR-AIGAISVSANQGND--------------------KCRGEIG-YVLGSKYWGKGIATRAV 117 (185)
Q Consensus 67 ~~~~~~~i~~~~~-~vG~~~~~~~~~~~--------------------~~~~~~~-~~v~~~~rg~G~g~~ll 117 (185)
.....+++..++. +||++-+....... ...+|+| ++|+|+||+......|+
T Consensus 28 ~~~~h~lv~~~~~~~VGt~Rl~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~EisRl~V~~~~R~~~~~~~L~ 100 (101)
T PF13444_consen 28 EHSVHLLVRDKNTEVVGTVRLILPSPAGPLEGFYSESEFDLDPLLPLPRRVAEISRLCVHPEYRRRKVLLLLW 100 (101)
T ss_pred CCccEEEEEECCCCEEEEEEeeccccccccccCCchhhcCcchhhccCCcEEEeehheECHhHCCChHHHHHh
Confidence 3445566666554 99999886654421 1125665 44899999987665543
No 135
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=73.96 E-value=7.8 Score=23.83 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.3
Q ss_pred hhhHHHHHHcCCceeeeeee
Q 029943 143 VGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 143 ~~a~~~y~k~Gf~~~~~~~~ 162 (185)
.+|++||+.+||+.......
T Consensus 13 ~~s~~FY~~LGf~~~~~~~~ 32 (113)
T cd08356 13 AESKQFYQALGFELEWENDN 32 (113)
T ss_pred HHHHHHHHHhCCeeEecCCC
Confidence 48999999999998776543
No 136
>PRK15312 antimicrobial resistance protein Mig-14; Provisional
Probab=72.38 E-value=18 Score=26.79 Aligned_cols=93 Identities=4% Similarity=-0.102 Sum_probs=54.0
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIG 100 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~ 100 (185)
.+|++.+=-.+.+..++.+-...+|-...+-...+...+++..... --...++..+|+|+++-.+...+.+.. ..+.
T Consensus 156 ~v~~is~fS~~Ela~iY~~Lf~~Rwg~~~~~~~~~~l~e~f~~Lr~-l~fG~VLfl~~~PcA~qlv~k~eSp~w--i~~D 232 (298)
T PRK15312 156 SVKSVADCSSDELTHIFIELFRSRFGNTLSCYPADNLANFFSQLRH-LLFGHILYIEGIPCAFDIVLKSESQMN--VYFD 232 (298)
T ss_pred EEEEhHHCCHHHHHHHHHHHHHHHhCCCCCcccHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCc--EEEe
Confidence 3555555555555555554333344222221245666666665432 234556666999999999988776544 2222
Q ss_pred E---EECcCccCcCHHHHH
Q 029943 101 Y---VLGSKYWGKGIATRA 116 (185)
Q Consensus 101 ~---~v~~~~rg~G~g~~l 116 (185)
+ .+||++..--.|+-|
T Consensus 233 ~iNgG~Dpe~~~~spGSIL 251 (298)
T PRK15312 233 VPNGAVKNECMPLSPGSIL 251 (298)
T ss_pred cccCccCcccccCCCccEE
Confidence 3 288998877777744
No 137
>PF07395 Mig-14: Mig-14; InterPro: IPR009977 This family contains a number of bacterial mig-14 proteins (approximately 270 residues long). In Salmonella, mig-14 contributes to resistance to antimicrobial peptides, although the mechanism is not fully understood [].
Probab=70.40 E-value=10 Score=27.70 Aligned_cols=99 Identities=9% Similarity=-0.029 Sum_probs=57.4
Q ss_pred EeecCCccCHHHHHHhhcCcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCCCCCceEEEE
Q 029943 21 SLRPMDLSDVDDFMVWASDDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQGNDKCRGEIG 100 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~ 100 (185)
.++++.+=..+.+.+++.+-...+|- ......+...+++..... --...++..+|+||++-.+...+.... ..+.
T Consensus 128 ~v~~v~~~S~~Ela~iY~~Lf~~Rwg--~~~~~~~~l~e~f~~Lr~-~~fG~vL~l~~~P~Aiqlv~k~es~~w--v~~D 202 (264)
T PF07395_consen 128 SVRPVSEFSPEELADIYIDLFQKRWG--FRCYGKEHLAEFFSELRH-MIFGSVLFLNGQPCAIQLVYKVESPKW--VYFD 202 (264)
T ss_pred EEEEHHHCCHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHhHH-hheeeEEEECCcceEEEEEEEecCCCe--EEEe
Confidence 35555555555555555443333432 222244555555555432 224456666999999999988876544 3332
Q ss_pred EE---ECcCccCcCHHHHHH----HHHHHHH
Q 029943 101 YV---LGSKYWGKGIATRAV----KMASDAI 124 (185)
Q Consensus 101 ~~---v~~~~rg~G~g~~ll----~~~~~~a 124 (185)
+. +||+++.--.|+-|+ +.+-++|
T Consensus 203 ~iNgG~Dp~~~~~SpGSiL~w~Ni~~A~~~~ 233 (264)
T PF07395_consen 203 YINGGYDPECRDFSPGSILMWLNIQDAWEYC 233 (264)
T ss_pred cccCccCcccccCCCccEEEEeeHHHHHHHH
Confidence 33 799999888887553 4455555
No 138
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=68.95 E-value=54 Score=25.70 Aligned_cols=87 Identities=13% Similarity=0.056 Sum_probs=46.8
Q ss_pred EEEEEEC-CeeEEEEEEEecCCCCCceEEEEEE-ECc--CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEe--------
Q 029943 71 FMAICVN-NRAIGAISVSANQGNDKCRGEIGYV-LGS--KYWGKGIATRAVKMASDAIFAEWPHLERLEALV-------- 138 (185)
Q Consensus 71 ~~~i~~~-~~~vG~~~~~~~~~~~~~~~~~~~~-v~~--~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~-------- 138 (185)
.+.+..+ +.++|.+.+........ ..+.+. =.| ++....+-..+++.+..++.+. ++-.|....
T Consensus 37 ~vgv~~d~~~v~aa~ll~~~~~~~g--~~~~yiprGPv~d~~d~ell~~f~~~Lk~~akk~--~a~~lridP~~~~~~~~ 112 (406)
T PF02388_consen 37 RVGVKDDGGEVAAAALLLRKKPFKG--FKYAYIPRGPVMDYSDEELLEFFLEELKKYAKKK--RALFLRIDPNVIYQERD 112 (406)
T ss_dssp EEEEE-TTS-EEEEEEEEEEECTTT--CEEEEETT--EC-TT-HHHHHHHHHHHHHHHCTT--TEEEEEE--S-EEECE-
T ss_pred EEEEEeCCCeEEEEEEEEEeccCCc--eeEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHC--CEEEEEEeCchhhhhcc
Confidence 3444444 66777665555443322 222222 236 7888888888999999998543 333333221
Q ss_pred -------eccChhhHHHHHHcCCceeeeee
Q 029943 139 -------DVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 139 -------~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
...|...+..++++||+..|...
T Consensus 113 ~~g~~~~~~~~~~~~~~l~~~G~~~~g~~~ 142 (406)
T PF02388_consen 113 EDGEPIEGEENDELIENLKALGFRHQGFTK 142 (406)
T ss_dssp TTS-EEEE-S-THHHHHHHHTT-CCTS-SS
T ss_pred cccccccCcchHHHHHHHHhcCceecCccc
Confidence 23467889999999999987654
No 139
>PRK04531 acetylglutamate kinase; Provisional
Probab=68.34 E-value=56 Score=25.61 Aligned_cols=60 Identities=12% Similarity=0.080 Sum_probs=39.4
Q ss_pred EEECCeeEEEEEEEecCCCCCceEEE-EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChh
Q 029943 74 ICVNNRAIGAISVSANQGNDKCRGEI-GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVG 144 (185)
Q Consensus 74 i~~~~~~vG~~~~~~~~~~~~~~~~~-~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~ 144 (185)
+..++..=|.+.+..... . +.+ -|.+.+..||.|++-.++..+.+. +.++.+.+..+|+-
T Consensus 292 ~y~~~~y~~~Aiv~~~~~---~-~~Ldkf~v~~~~~~~~v~d~vf~~~~~~-------~~~L~Wrsr~~n~~ 352 (398)
T PRK04531 292 AYVSENYRAAAILTETGG---G-PYLDKFAVLDDARGEGLGRAVWNVMREE-------TPQLFWRSRHNNTI 352 (398)
T ss_pred EEEeCCCcEEEEEecCCC---c-eEeEEEEEccchhhcChHHHHHHHHHhh-------CCceEEEcCCCCCc
Confidence 333555555555554322 1 333 577999999999999888766553 24677888888764
No 140
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=67.48 E-value=42 Score=23.90 Aligned_cols=67 Identities=10% Similarity=0.108 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeeeeecCCeEEEEEEEeec
Q 029943 111 GIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKYFIHKGKTRDTIMFSLL 179 (185)
Q Consensus 111 G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~~~~g~~~d~~~~~~~ 179 (185)
|.|-.++..+++...+..+++.++.+.....-..-+.+..+++|+...+. -..-+|.++..++-+..
T Consensus 93 GMGG~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L~~~~~~I~~E~--ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 93 GMGGTLIREILEEGKEKLKGVERLILQPNIHTYELREWLSANSYEIKAET--ILEEDGKIYEILVVEKS 159 (226)
T ss_pred CCcHHHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHHHhCCceeeeee--eecccCeEEEEEEEecC
Confidence 88899999999988777767778888766666678899999999987753 22235666666655544
No 141
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=66.62 E-value=9.1 Score=23.80 Aligned_cols=18 Identities=17% Similarity=-0.001 Sum_probs=14.8
Q ss_pred ChhhHHHHHHcCCceeee
Q 029943 142 NVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 142 N~~a~~~y~k~Gf~~~~~ 159 (185)
=.+|++||+.+||+....
T Consensus 11 l~~s~~FY~~lGf~~~~~ 28 (124)
T cd09012 11 LEKSTAFYTALGFEFNPQ 28 (124)
T ss_pred HHHHHHHHHHCCCEEccc
Confidence 358999999999987643
No 142
>cd08350 BLMT_like BLMT, a bleomycin resistance protein encoded on the transposon Tn5, and similar proteins. BLMT is a bleomycin (Bm) resistance protein, encoded by the ble gene on the transposon Tn5. This protein confers a survival advantage to Escherichia coli host cells. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMT has strong binding affinity to Bm and it protects against this lethal compound through drug sequestering. BLMT has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMT is a dimer with two Bm-binding pockets formed at the dimer interface.
Probab=65.86 E-value=8.1 Score=23.90 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=15.7
Q ss_pred hhhHHHHHHcCCceeeeee
Q 029943 143 VGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 143 ~~a~~~y~k~Gf~~~~~~~ 161 (185)
..|++||+++||+......
T Consensus 14 ~~s~~FY~~lG~~~~~~~~ 32 (120)
T cd08350 14 DATEAFYARLGFSVGYRQA 32 (120)
T ss_pred HHHHHHHHHcCCEEEecCC
Confidence 4899999999999876554
No 143
>PRK00756 acyltransferase NodA; Provisional
Probab=63.88 E-value=18 Score=24.45 Aligned_cols=50 Identities=16% Similarity=0.141 Sum_probs=35.9
Q ss_pred EEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHc
Q 029943 97 GEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKA 152 (185)
Q Consensus 97 ~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~ 152 (185)
+++|++ |.|+..|.||+..+ ..+.-.. +++ ++..-+..|... .++-.+++
T Consensus 86 aElGLygVRpDLEGlGi~~S~-r~m~PvL-q~L-gVPF~FGtVR~a---l~~Hv~R~ 136 (196)
T PRK00756 86 AELGLYGVRPDLEGLGIAHSI-RAMYPVL-QEL-GVPFAFGTVRHA---LRNHVERL 136 (196)
T ss_pred EEeeeeeeccccccccchhhH-HHHHHHH-Hhc-CCCeecccchHH---HHHHHHHH
Confidence 888888 99999999998866 4555555 677 888777776553 44444443
No 144
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=61.13 E-value=21 Score=21.38 Aligned_cols=45 Identities=4% Similarity=0.063 Sum_probs=26.2
Q ss_pred cceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEE
Q 029943 40 DKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAI 84 (185)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~ 84 (185)
+....|.+.......+.-++|.++...+.-++-++..+|++||-+
T Consensus 37 ~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~eiV~EG 81 (93)
T PF07315_consen 37 PFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVINDEIVAEG 81 (93)
T ss_dssp -EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETTEEEEES
T ss_pred ceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECCEEEecC
Confidence 344455554444344566777777777666555677799999864
No 145
>cd07235 MRD Mitomycin C resistance protein (MRD). Mitomycin C (MC) is a naturally occurring antibiotic, and antitumor agent used in the treatment of cancer. Its antitumor activity is exerted primarily through monofunctional and bifunctional alkylation of DNA. MRD binds to MC and functions as a component of the MC exporting system. MC is bound to MRD by a stacking interaction between a His and a Trp. MRD adopts a structural fold similar to bleomycin resistance protein, glyoxalase I, and extradiol dioxygenases; and it has binding sites at an identical location to binding sites in these evolutionarily related enzymes.
Probab=57.73 E-value=7.8 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=16.7
Q ss_pred EEEEeeccChhhHHHHHHcCCceee
Q 029943 134 LEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 134 i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
|.+.| .+=.+|++||+++||+...
T Consensus 4 i~l~V-~D~~~a~~FY~~LGf~~~~ 27 (122)
T cd07235 4 VGIVV-ADMAKSLDFYRRLGFDFPE 27 (122)
T ss_pred EEEEe-ccHHHHHHHHHHhCceecC
Confidence 33433 3335899999999998753
No 146
>COG2898 Uncharacterized conserved protein [Function unknown]
Probab=56.87 E-value=1.1e+02 Score=25.13 Aligned_cols=59 Identities=7% Similarity=-0.007 Sum_probs=42.1
Q ss_pred CCeeEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec
Q 029943 77 NNRAIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV 140 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~ 140 (185)
+|+++|++.+.+...... ..+.+. -+|+. -+|+.-.|+..++.+++++ |++++.+...+
T Consensus 401 ~g~VvaFa~l~~~~~~~~--~SlDlMR~sp~a-p~g~mdfLf~~li~~aKe~--G~~~fsLgmAp 460 (538)
T COG2898 401 EGEVVAFANLMPTGGKEG--YSLDLMRRSPDA-PNGTMDFLFSELILWAKEE--GYQRFSLGMAP 460 (538)
T ss_pred CCCeEEEEeecccCCcce--eEEEeeecCCCC-CchHHHHHHHHHHHHHHHc--CCeEEecCCcc
Confidence 888999999998654321 232222 23333 2689999999999999555 99999887654
No 147
>cd08353 Glo_EDI_BRP_like_7 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=54.33 E-value=16 Score=23.31 Aligned_cols=29 Identities=17% Similarity=0.322 Sum_probs=20.0
Q ss_pred CccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 130 HLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+++.|.+.|. +=..|++||+++||+....
T Consensus 3 ~i~Hi~i~v~-Dl~~s~~FY~~LG~~~~~~ 31 (142)
T cd08353 3 RMDNVGIVVR-DLEAAIAFFLELGLELEGR 31 (142)
T ss_pred eeeeEEEEeC-CHHHHHHHHHHcCCEEccc
Confidence 3455555553 4468899999999987544
No 148
>PF14696 Glyoxalase_5: Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal ; PDB: 1CJX_A 2R5V_A.
Probab=53.05 E-value=6.8 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=24.4
Q ss_pred CccEEEEEeeccChhhHHHHHHcCCceeeeeee
Q 029943 130 HLERLEALVDVENVGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~ 162 (185)
|+.-|...+.. -..+..+++++||+.++..+.
T Consensus 9 G~dFvEFa~~~-~~~l~~~~~~lGF~~~a~hrs 40 (139)
T PF14696_consen 9 GFDFVEFAVPD-AQALAQLFTALGFQPVARHRS 40 (139)
T ss_dssp EEEEEEEE-SS-TTSCHHHHCCCCEEEECCECC
T ss_pred CeEEEEEecCC-HHHHHHHHHHhCcceEEecCC
Confidence 66777776655 467788999999999998765
No 149
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.43 E-value=31 Score=24.35 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=26.3
Q ss_pred hhCCCccEEEE---EeeccChhhHHHHHHcCCceeee
Q 029943 126 AEWPHLERLEA---LVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 126 ~~~~~~~~i~~---~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+.+ ++++|.+ ++.+-|.+...|++++||.....
T Consensus 114 ~al-~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~ 149 (238)
T COG3473 114 NAL-GAQRISVLTPYIDEVNQREIEFLEANGFEIVDF 149 (238)
T ss_pred Hhh-CcceEEEeccchhhhhhHHHHHHHhCCeEEEEe
Confidence 455 7777665 55788999999999999998764
No 150
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=49.04 E-value=2.1e+02 Score=26.07 Aligned_cols=59 Identities=8% Similarity=0.006 Sum_probs=44.8
Q ss_pred CCeeEEEEEEEecCCCCCceEEEEEEE-CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 77 NNRAIGAISVSANQGNDKCRGEIGYVL-GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~~~~~~~~v-~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+|+++|++.+.+.... . +.+.++- +|+. -.|+.--|+..++.++.++ |++.+.+...+-
T Consensus 429 ~G~i~af~s~~p~~~~--g-~slDLMRr~pda-pnGvmE~L~~~l~~~~k~~--G~~~~sLg~APl 488 (1094)
T PRK02983 429 DGQVVALLSFVPWGRR--G-LSLDLMRRSPDA-PNGVIELMVAELALEAESL--GITRISLNFAVF 488 (1094)
T ss_pred CCeEEEEEEEeeeCCC--C-EEEEecccCCCC-CCCHHHHHHHHHHHHHHHc--CCCEEEechhhh
Confidence 7899999999996532 1 4444442 4554 5799999999999999555 999999987663
No 151
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=48.35 E-value=75 Score=21.78 Aligned_cols=57 Identities=7% Similarity=-0.103 Sum_probs=42.3
Q ss_pred ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChh---hHHHHHHcCCceeeee
Q 029943 103 LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVG---SQKVLLKAGFMQEGVL 160 (185)
Q Consensus 103 v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~---a~~~y~k~Gf~~~~~~ 160 (185)
+-|+-.=-+.-++-+-+++++|-+++ .+++|.+....+|.. -.+-+.=.||+.....
T Consensus 107 ~IPdq~l~~gsKe~lvalLEfAEekl-~~d~Vfi~F~K~R~dr~~LlrtfsyvGFEpvrp~ 166 (191)
T KOG4387|consen 107 EIPDQALDVGSKEGLVALLEFAEEKL-HVDKVFICFDKNREDRAALLRTFSYVGFEPVRPD 166 (191)
T ss_pred ecCcchhcccchHhHHHHHHHHHHhh-ccceEEEEEecCccChHhhhhhehcceeeecCCC
Confidence 44665566777888999999998888 999999988887753 3444555688776654
No 152
>cd08358 Glo_EDI_BRP_like_21 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=47.16 E-value=32 Score=22.00 Aligned_cols=21 Identities=10% Similarity=-0.170 Sum_probs=15.7
Q ss_pred ccChhhHHHHH-HcCCceeeee
Q 029943 140 VENVGSQKVLL-KAGFMQEGVL 160 (185)
Q Consensus 140 ~~N~~a~~~y~-k~Gf~~~~~~ 160 (185)
.+-.+|++||+ .+||+...+.
T Consensus 11 ~DlerSi~FY~~vLG~~~~~~~ 32 (127)
T cd08358 11 GNRNKTIKFYREVLGMKVLRHE 32 (127)
T ss_pred CCHHHHHHHHHHhcCCEEEeee
Confidence 34468999995 5899976644
No 153
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=46.13 E-value=51 Score=22.26 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=27.0
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
.+++|.-|+|.++| +.+ |++++.+- ..|+.-..-.+..|-+.++..
T Consensus 122 ~~d~R~ygigaqIL--------~dL-GV~~~rLL--tnnp~k~~~L~g~gleV~~~v 167 (169)
T PF00925_consen 122 PEDLRDYGIGAQIL--------RDL-GVKKMRLL--TNNPRKYVALEGFGLEVVERV 167 (169)
T ss_dssp -S----THHHHHHH--------HHT-T--SEEEE---S-HHHHHHHHHTT--EEEEE
T ss_pred ccccccHHHHHHHH--------HHc-CCCEEEEC--CCChhHHHHHhcCCCEEEEEe
Confidence 47888889998666 455 99998764 457888888999998887764
No 154
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=44.73 E-value=25 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=16.4
Q ss_pred hhhHHHHHHcCCceeeeeee
Q 029943 143 VGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 143 ~~a~~~y~k~Gf~~~~~~~~ 162 (185)
.+|.+||.++||+.-..+.+
T Consensus 15 ~~S~~Fy~alGfk~Npq~sd 34 (133)
T COG3607 15 EASKAFYTALGFKFNPQFSD 34 (133)
T ss_pred HHHHHHHHHhCcccCCCccc
Confidence 57899999999998766544
No 155
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=44.66 E-value=77 Score=19.79 Aligned_cols=72 Identities=13% Similarity=0.009 Sum_probs=42.2
Q ss_pred CCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCce
Q 029943 77 NNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQ 156 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~ 156 (185)
.+++-|.-.+......+.. .++.....| ......+++.+ ... |++.+.+.....+..+++..++.|.+.
T Consensus 37 ~~~i~G~~~y~sl~e~p~~-iDlavv~~~--------~~~~~~~v~~~-~~~-g~~~v~~~~g~~~~~~~~~a~~~gi~v 105 (116)
T PF13380_consen 37 GGEILGIKCYPSLAEIPEP-IDLAVVCVP--------PDKVPEIVDEA-AAL-GVKAVWLQPGAESEELIEAAREAGIRV 105 (116)
T ss_dssp CSEETTEE-BSSGGGCSST--SEEEE-S---------HHHHHHHHHHH-HHH-T-SEEEE-TTS--HHHHHHHHHTT-EE
T ss_pred ceEECcEEeeccccCCCCC-CCEEEEEcC--------HHHHHHHHHHH-HHc-CCCEEEEEcchHHHHHHHHHHHcCCEE
Confidence 4566677777666532222 554444333 33444555665 334 899999999999999999999999998
Q ss_pred eee
Q 029943 157 EGV 159 (185)
Q Consensus 157 ~~~ 159 (185)
.|-
T Consensus 106 igp 108 (116)
T PF13380_consen 106 IGP 108 (116)
T ss_dssp EES
T ss_pred EeC
Confidence 863
No 156
>cd04266 DUF619-NAGS-FABP DUF619 domain of N-acetylglutamate Synthase of the fungal arginine-biosynthetic pathway. DUF619-NAGS-FABP: This family includes the DUF619 domain of N-acetylglutamate synthase (NAGS) of the fungal arginine-biosynthetic pathway (FABP). This NAGS (also known as arginine-requiring protein 2 or ARG2) consists of an N-terminal NAG kinase-like domain and a C-terminal DUF619 domain. NAGS catalyzes the formation of NAG from acetylcoenzyme A and L-glutamate. The DUF619 domain, yet to be characterized, is predicted to function in NAGS association in fungi.
Probab=44.07 E-value=79 Score=19.72 Aligned_cols=62 Identities=16% Similarity=0.086 Sum_probs=39.0
Q ss_pred ECCeeEEEEEEEecCCC---CCceEEE-EEEECcCccC-cCHHHHHHHHHHHHHHhhCCCccE-EEEEeeccChh
Q 029943 76 VNNRAIGAISVSANQGN---DKCRGEI-GYVLGSKYWG-KGIATRAVKMASDAIFAEWPHLER-LEALVDVENVG 144 (185)
Q Consensus 76 ~~~~~vG~~~~~~~~~~---~~~~~~~-~~~v~~~~rg-~G~g~~ll~~~~~~a~~~~~~~~~-i~~~~~~~N~~ 144 (185)
.++..=|.+.+....+. ....+.+ -+.|.+..|| .|++-.++..+.+- ..+ +...+..+|+-
T Consensus 16 ~~~~y~~~AIvt~e~~~~~~~~~v~yLdKFav~~~~~gl~gv~D~vf~~m~~~-------fp~~L~Wrsr~~n~~ 83 (108)
T cd04266 16 IAGDYEGAAILTWEGPDGSTPEKIAYLDKFAVLPKAQGSDGIADILFNAMLDG-------FPNELIWRSRKDNPV 83 (108)
T ss_pred EeCCCcEEEEEecCCCCccCCCCceEEEEEEEccccccccchHHHHHHHHHHc-------CCCceEEEeCCCCcc
Confidence 35555566666554321 1111444 5779999997 89999888877662 233 66777777764
No 157
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=43.63 E-value=36 Score=24.51 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCccEEEEE---eeccChhhHHHHHHcCCceeeee
Q 029943 117 VKMASDAIFAEWPHLERLEAL---VDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 117 l~~~~~~a~~~~~~~~~i~~~---~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
..++++- ++.+ |+++|.+- ...-|....+||++.||+.....
T Consensus 108 ~~A~~~A-L~al-g~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~ 152 (239)
T TIGR02990 108 SSAAVDG-LAAL-GVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFT 152 (239)
T ss_pred HHHHHHH-HHHc-CCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeee
Confidence 3344443 4677 99998774 45668899999999999987763
No 158
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=43.51 E-value=17 Score=21.15 Aligned_cols=37 Identities=8% Similarity=-0.014 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcC
Q 029943 115 RAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAG 153 (185)
Q Consensus 115 ~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~G 153 (185)
++++.+...-|... . -.+++.++|+|..|+..|...-
T Consensus 3 ~LL~~I~~~~Fa~~-d-l~LyLDTHP~d~~Al~~y~~~~ 39 (78)
T PF12652_consen 3 ELLREIQEVSFAVV-D-LNLYLDTHPDDQEALEYYNEYS 39 (78)
T ss_pred HHHHHHHHHhhHHH-H-HHHHhcCCCCcHHHHHHHHHHH
Confidence 45555555444443 3 2488999999999999998753
No 159
>cd07267 THT_Oxygenase_N N-terminal domain of 2,4,5-trihydroxytoluene (THT) oxygenase. This subfamily contains the N-terminal, non-catalytic, domain of THT oxygenase. THT oxygenase is an extradiol dioxygenase in the 2,4-dinitrotoluene (DNT) degradation pathway. It catalyzes the conversion of 2,4,5-trihydroxytoluene to an unstable ring fission product, 2,4-dihydroxy-5-methyl-6-oxo-2,4-hexadienoic acid. The native protein was determined to be a dimer by gel filtration. The enzyme belongs to the type I family of extradiol dioxygenases which contains two structurally homologous barrel-shaped domains at the N- and C-terminus of each monomer. The active-site metal is located in the C-terminal barrel. Fe(II) is required for its catalytic activity.
Probab=43.12 E-value=31 Score=21.00 Aligned_cols=28 Identities=7% Similarity=-0.021 Sum_probs=19.0
Q ss_pred ccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 131 LERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+..+.+.|.. =.+|.+||+.+||+....
T Consensus 4 l~hv~l~v~D-l~~s~~FY~~lGl~~~~~ 31 (113)
T cd07267 4 IAHVRFEHPD-LDKAERFLTDFGLEVAAR 31 (113)
T ss_pred EEEEEEccCC-HHHHHHHHHHcCCEEEEe
Confidence 3445555432 357999999999987654
No 160
>cd08342 HPPD_N_like N-terminal domain of 4-hydroxyphenylpyruvate dioxygenase (HPPD) and hydroxymandelate Synthase (HmaS). HppD and HmaS are non-heme iron-dependent dioxygenases, which modify a common substrate, 4-hydroxyphenylpyruvate (HPP), but yield different products. HPPD catalyzes the second reaction in tyrosine catabolism, the conversion of HPP to homogentisate (2,5-dihydroxyphenylacetic acid, HG). HmaS converts HPP to 4-hydroxymandelate, a committed step in the formation of hydroxyphenylglycerine, a structural component of nonproteinogenic macrocyclic peptide antibiotics, such as vancomycin. If the emphasis is on catalytic chemistry, HPPD and HmaS are classified as members of a large family of alpha-keto acid dependent mononuclear non-heme iron oxygenases most of which require Fe(II), molecular oxygen, and an alpha-keto acid (typically alpha-ketoglutarate) to either oxygenate or oxidize a third substrate. Both enzymes are exceptions in that they require two, instead of three, su
Probab=42.42 E-value=47 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=19.7
Q ss_pred EEEEEeeccChhhHHHHHH-cCCceeeeee
Q 029943 133 RLEALVDVENVGSQKVLLK-AGFMQEGVLR 161 (185)
Q Consensus 133 ~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~~ 161 (185)
.+.+.| .+=.+|++||++ +||+......
T Consensus 3 Hi~i~V-~D~e~s~~FY~~vLGf~~~~~~~ 31 (136)
T cd08342 3 HVEFYV-GNAKQLASWFSTKLGFEPVAYHG 31 (136)
T ss_pred EEEEEe-CCHHHHHHHHHHhcCCeEEEecC
Confidence 344444 344589999999 9999877543
No 161
>cd07238 Glo_EDI_BRP_like_5 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structure of this family is a that of a strand-swapped dimer.
Probab=42.11 E-value=27 Score=21.01 Aligned_cols=16 Identities=6% Similarity=-0.081 Sum_probs=13.2
Q ss_pred hhhHHHHHH-cCCceee
Q 029943 143 VGSQKVLLK-AGFMQEG 158 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~ 158 (185)
..|.+||++ +||+...
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (112)
T cd07238 12 EAAAAFYADVLGLDVVM 28 (112)
T ss_pred HHHHHHHHHhcCceEEE
Confidence 478999997 9999754
No 162
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=42.04 E-value=1.9e+02 Score=25.56 Aligned_cols=39 Identities=8% Similarity=0.134 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecCC
Q 029943 53 SREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQG 91 (185)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~~ 91 (185)
..++....+...........++..+|+++|+..+.....
T Consensus 687 ~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr 725 (951)
T KOG0207|consen 687 IPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVR 725 (951)
T ss_pred CchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccc
Confidence 344455555554444555556666999999988877643
No 163
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=41.60 E-value=38 Score=20.08 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=17.2
Q ss_pred hhhHHHHHH-cCCceeeeeeeee
Q 029943 143 VGSQKVLLK-AGFMQEGVLRKYF 164 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~~~~~~~ 164 (185)
..|++||++ +||+.........
T Consensus 7 ~~a~~FY~~~lg~~~~~~~~~~~ 29 (108)
T PF12681_consen 7 EAAAAFYEDVLGFEVVFDDPDYV 29 (108)
T ss_dssp HHHHHHHHHTTTSEEEEEETSEE
T ss_pred HHHHHHHHHhcCCEEEEeCCCeE
Confidence 478999998 9999988554433
No 164
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=41.36 E-value=33 Score=24.90 Aligned_cols=36 Identities=22% Similarity=0.256 Sum_probs=30.3
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeec-cC
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDV-EN 142 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~-~N 142 (185)
+...|+-.|...+..++.++. +. |++.|++++++ +|
T Consensus 41 ~~~~GH~~G~~~l~~i~~~c~-~~-GI~~vT~yaFS~eN 77 (249)
T PRK14831 41 PRIMGHRRGVDALKDLLRCCK-DW-GIGALTAYAFSTEN 77 (249)
T ss_pred chhhhHHHHHHHHHHHHHHHH-Hc-CCCEEEEeecchhh
Confidence 445688889999999999994 55 99999999988 55
No 165
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=41.20 E-value=66 Score=22.01 Aligned_cols=45 Identities=7% Similarity=0.083 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 113 ATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 113 g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
|+.|+..+++.+ +. .+..+++-+.++-+....+.++.|+.....-
T Consensus 26 GkpLI~~v~~al-~~--~~d~i~v~isp~tp~t~~~~~~~gv~vi~tp 70 (177)
T COG2266 26 GKPLIDRVLEAL-RK--IVDEIIVAISPHTPKTKEYLESVGVKVIETP 70 (177)
T ss_pred CccHHHHHHHHH-Hh--hcCcEEEEeCCCCHhHHHHHHhcCceEEEcC
Confidence 467888888876 43 5899999999999999999999997776654
No 166
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=38.63 E-value=1.1e+02 Score=19.81 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=36.7
Q ss_pred CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeeeee
Q 029943 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLRKY 163 (185)
Q Consensus 106 ~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~ 163 (185)
+-||-|+|+.+++.+-+.. . +.+.....-.|.-|-.-..|.|-..-..=++.
T Consensus 6 DGQGGGiG~~iv~~lr~~~-~-----~~~eI~AlGTNa~AT~~MlKaGA~~gATGENa 57 (131)
T PF12953_consen 6 DGQGGGIGKQIVEKLRKEL-P-----EEVEIIALGTNAIATSAMLKAGANEGATGENA 57 (131)
T ss_pred eCCCChhHHHHHHHHHHhC-C-----CCcEEEEEehhHHHHHHHHHcCCCCcccccch
Confidence 4588999998887776653 1 23555567789889999999998765443333
No 167
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=38.51 E-value=86 Score=18.92 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=22.2
Q ss_pred CccEEEEEeeccChhhHHHHHH-cCCceeeeeeeee
Q 029943 130 HLERLEALVDVENVGSQKVLLK-AGFMQEGVLRKYF 164 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~~~~~ 164 (185)
++..+.+.+. +=..+++||++ +||+.......+.
T Consensus 3 ~i~hv~l~v~-d~~~s~~FY~~~lG~~~~~~~~~~~ 37 (120)
T cd08362 3 ALRGVGLGVP-DLAAAAAFYREVWGLSVVAEDDGIV 37 (120)
T ss_pred eeeEEEEecC-CHHHHHHHHHhCcCcEEEEecCCEE
Confidence 4555655553 33589999998 9998765543333
No 168
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=37.80 E-value=9.3 Score=32.01 Aligned_cols=87 Identities=21% Similarity=0.211 Sum_probs=59.0
Q ss_pred cEEEEEECCe-eEEEEEEEecCCCCCceEEEEEE-ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHH
Q 029943 70 WFMAICVNNR-AIGAISVSANQGNDKCRGEIGYV-LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQK 147 (185)
Q Consensus 70 ~~~~i~~~~~-~vG~~~~~~~~~~~~~~~~~~~~-v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~ 147 (185)
..+.+..++. +||-+++...+.... .++-+. |.-+.|-+|+|+.++..+-++..... ++......+.. .++.
T Consensus 420 ~~~~~~~d~~g~vggi~~r~f~~k~f--~eivf~av~~~eqv~g~g~hlmnhlkd~~~~~~-~i~~~ltyad~---~aig 493 (720)
T KOG1472|consen 420 HVMARIKDNEGVVGGICFRPFPEKGF--TEIVFCAVTTDEQVKGSGTHLMNHLKDYVRSSS-TIDYALTYADE---GAIG 493 (720)
T ss_pred ccceeeccccccccccccCcCcccCC--cceeeccccCcccccccCcCchhhHHHHhhccc-hHHHHHHhhhh---cccc
Confidence 3344444444 999999888876544 555444 88999999999999999999985543 24333333322 4688
Q ss_pred HHHHcCCceeeeeee
Q 029943 148 VLLKAGFMQEGVLRK 162 (185)
Q Consensus 148 ~y~k~Gf~~~~~~~~ 162 (185)
-+++.||...-.+..
T Consensus 494 yfkkqgfs~ei~~~~ 508 (720)
T KOG1472|consen 494 YFKKQGFSKEIKFEK 508 (720)
T ss_pred cccCccchhhccccc
Confidence 888899887655544
No 169
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=37.69 E-value=82 Score=22.96 Aligned_cols=32 Identities=19% Similarity=0.114 Sum_probs=26.4
Q ss_pred cCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 108 WGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 108 rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
.|.--|...+..+++++ ... |++.+++++.+.
T Consensus 46 ~Gh~~G~~~l~~~l~~c-~~~-GI~~vTvYaFS~ 77 (251)
T PRK14830 46 AGHKAGMDTVKKITKAA-SEL-GVKVLTLYAFST 77 (251)
T ss_pred hhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEEeh
Confidence 47778889999999999 455 999999988654
No 170
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=36.36 E-value=51 Score=23.65 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=29.5
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
|...|+--|.+.+..++++| .++ |++.+++++++.
T Consensus 27 ~~~~GH~~G~~~~~~i~~~c-~~~-GI~~lT~YaFS~ 61 (230)
T PRK14837 27 SFFEGHKEGLKRAKEIVKHS-LKL-GIKYLSLYVFST 61 (230)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55667888999999999999 556 999999998765
No 171
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=36.14 E-value=51 Score=23.58 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=29.7
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
|...|+--|...+..++++| .+. |++.+++.+++.
T Consensus 20 ~~~~GH~~G~~~~~~v~~~c-~~~-GI~~lT~yaFSt 54 (226)
T TIGR00055 20 PRAYGHKAGVKSLRRILRWC-ANL-GVECLTLYAFST 54 (226)
T ss_pred ChhHhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55668888999999999999 556 999999998765
No 172
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.11 E-value=76 Score=17.28 Aligned_cols=28 Identities=21% Similarity=-0.009 Sum_probs=17.5
Q ss_pred ccEEEEEeeccCh-hhHHHHHHcCCceee
Q 029943 131 LERLEALVDVENV-GSQKVLLKAGFMQEG 158 (185)
Q Consensus 131 ~~~i~~~~~~~N~-~a~~~y~k~Gf~~~~ 158 (185)
...+.+.+...+. ...+.+++.||+..+
T Consensus 42 ~~~v~i~v~~~~~~~~~~~L~~~G~~v~~ 70 (72)
T cd04883 42 NKILVFRVQTMNPRPIIEDLRRAGYEVLW 70 (72)
T ss_pred eEEEEEEEecCCHHHHHHHHHHCCCeeeC
Confidence 3345555554455 778888888887643
No 173
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=35.20 E-value=37 Score=20.53 Aligned_cols=28 Identities=7% Similarity=0.038 Sum_probs=19.2
Q ss_pred ccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 131 LERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+..|.+.|. +=.+|.+||+.+||+....
T Consensus 3 i~hv~l~v~-d~~~s~~FY~~lG~~~~~~ 30 (112)
T cd08344 3 IDHFALEVP-DLEVARRFYEAFGLDVREE 30 (112)
T ss_pred eeEEEEecC-CHHHHHHHHHHhCCcEEee
Confidence 444555443 2358999999999998654
No 174
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=34.81 E-value=2.3e+02 Score=22.50 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=56.2
Q ss_pred cEEEEEECCeeEEEEEEEecCCCCCceEEEEEEE-Cc--CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEe--------
Q 029943 70 WFMAICVNNRAIGAISVSANQGNDKCRGEIGYVL-GS--KYWGKGIATRAVKMASDAIFAEWPHLERLEALV-------- 138 (185)
Q Consensus 70 ~~~~i~~~~~~vG~~~~~~~~~~~~~~~~~~~~v-~~--~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~-------- 138 (185)
..+.|..+++.++.+++........ ....+.- .| +|-++..-...++.+.+++.+. .+-.|....
T Consensus 41 ~~~~v~~~~~~v~aa~ll~k~~~~~--~~~~~~prGPv~dy~~~~l~~~~~k~l~~y~k~~--~~l~i~idP~l~~~~~~ 116 (418)
T COG2348 41 HLIGVKKDGNAVIAASLLSKKLPLG--FYTYYIPRGPVMDYSNQELLDYFIKELKKYAKSK--RALFIKIDPYLVYQQFD 116 (418)
T ss_pred eeEEEEecCceeeeeeeeeeeccCC--ceEEEecCCCcccccchHHHHHHHHHHHHHHhhc--cceEEEeccchhhhccc
Confidence 3456666777777666665543322 2323333 45 8888888888888888888543 222221111
Q ss_pred -------eccChhhHHHHHHcCCceeeeeee
Q 029943 139 -------DVENVGSQKVLLKAGFMQEGVLRK 162 (185)
Q Consensus 139 -------~~~N~~a~~~y~k~Gf~~~~~~~~ 162 (185)
...|...++.+.++|++..|.-..
T Consensus 117 ~~~~~~~~~~n~~~i~~l~~lG~k~~g~t~~ 147 (418)
T COG2348 117 LGGEIIENYNNLAIIKLLKDLGYKHSGFTKG 147 (418)
T ss_pred CCCccccCcchHHHHHHHHHhhhhhcCcccc
Confidence 156789999999999998886543
No 175
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=34.39 E-value=95 Score=22.49 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=32.0
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCc
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~ 155 (185)
-|.|+..+...+..+.... |.+.+...+++.|....++ ..++-.
T Consensus 12 GGvGKSt~a~~la~~l~~~-g~~vl~iD~D~~n~~~~~~-~~l~~~ 55 (241)
T PRK13886 12 GGVGKSFIAATIAQYKASK-GQKPLCIDTDPVNATFEGY-KALNVR 55 (241)
T ss_pred CCCcHHHHHHHHHHHHHhC-CCCEEEEECCCCCchhhhH-HhcCCc
Confidence 3899998888877766777 8888888899999754443 444433
No 176
>COG5630 ARG2 Acetylglutamate synthase [Amino acid transport and metabolism]
Probab=33.25 E-value=1.9e+02 Score=22.68 Aligned_cols=74 Identities=12% Similarity=0.122 Sum_probs=42.7
Q ss_pred CCeeEEEEEEEecCCCCCceEE-EEEEECcCccC-cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHH--HHc
Q 029943 77 NNRAIGAISVSANQGNDKCRGE-IGYVLGSKYWG-KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVL--LKA 152 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~~~~~-~~~~v~~~~rg-~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y--~k~ 152 (185)
.|.--|.+.+............ --+.|.++.|| -|++..++..+.+..- +.+......+|+ +.++| +..
T Consensus 381 sgdY~g~aIlTyegs~~~~vpYLDKfAVl~~aQGs~gisd~vfniM~e~fP------~eL~WRSR~~N~-vNkwYf~rSv 453 (495)
T COG5630 381 SGDYRGAAILTYEGSGENNVPYLDKFAVLDDAQGSEGISDAVFNIMREEFP------NELFWRSRHNNQ-VNKWYFARSV 453 (495)
T ss_pred eccceeeEEEEeeccCCCCCcceeeeeccccccccchHHHHHHHHHHHhCc------HhhhhhhcccCc-chheeeehhh
Confidence 5666677777766322211133 35779999999 8999988876665432 234444444443 34444 444
Q ss_pred CCcee
Q 029943 153 GFMQE 157 (185)
Q Consensus 153 Gf~~~ 157 (185)
|+-..
T Consensus 454 g~lk~ 458 (495)
T COG5630 454 GYLKQ 458 (495)
T ss_pred ehhhc
Confidence 55443
No 177
>cd07246 Glo_EDI_BRP_like_8 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=32.91 E-value=1e+02 Score=18.57 Aligned_cols=18 Identities=11% Similarity=0.010 Sum_probs=14.3
Q ss_pred hhhHHHHHH-cCCceeeee
Q 029943 143 VGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~~~ 160 (185)
..|.+||.+ +||......
T Consensus 13 ~~a~~FY~~~lG~~~~~~~ 31 (122)
T cd07246 13 AAAIDFYKKAFGAEELERM 31 (122)
T ss_pred HHHHHHHHHhhCCEEEEEE
Confidence 578999985 899987654
No 178
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=32.34 E-value=68 Score=17.93 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=15.4
Q ss_pred hhHHHHHHcCCceeeeeeee
Q 029943 144 GSQKVLLKAGFMQEGVLRKY 163 (185)
Q Consensus 144 ~a~~~y~k~Gf~~~~~~~~~ 163 (185)
..++.+++.||..+..--.+
T Consensus 11 e~ik~Le~~Gf~~vrqkGSH 30 (66)
T COG1724 11 EVIKALEKDGFQLVRQKGSH 30 (66)
T ss_pred HHHHHHHhCCcEEEEeecce
Confidence 47899999999987764433
No 179
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.32 E-value=71 Score=23.27 Aligned_cols=36 Identities=14% Similarity=0.111 Sum_probs=29.4
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccC
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVEN 142 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N 142 (185)
+...|+-.|.+.+..+++++ .++ |++.|++++++..
T Consensus 35 ~~~~GH~~G~~~l~~i~~~c-~~l-gI~~lTvYaFS~e 70 (249)
T PRK14834 35 PRAAGHRAGVEALRRVVRAA-GEL-GIGYLTLFAFSSE 70 (249)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEEecc
Confidence 44557778999999999999 556 9999999997654
No 180
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=32.18 E-value=66 Score=23.28 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=29.5
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+--|.+.+..+++++ .++ |++.|++++.+.
T Consensus 29 ~~~~GH~~G~~~l~~i~~~c-~~l-gI~~vTvYaFS~ 63 (241)
T PRK14842 29 KRSEGHREGANAIDRLMDAS-LEY-GLKNISLYAFST 63 (241)
T ss_pred ChhHhHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 55668888999999999999 555 999999998765
No 181
>PRK13913 3-methyladenine DNA glycosylase; Provisional
Probab=32.04 E-value=69 Score=22.77 Aligned_cols=38 Identities=26% Similarity=0.185 Sum_probs=28.3
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCce
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQ 156 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~ 156 (185)
+|+|.+..+.++-+++.. ..+ +. ..-..+++.++|+..
T Consensus 127 ~GIG~kTAd~iLlya~~r----p~f---vV--Dty~~Rv~~RlG~~~ 164 (218)
T PRK13913 127 KGIGKESADAILCYVCAK----EVM---VV--DKYSYLFLKKLGIEI 164 (218)
T ss_pred CCccHHHHHHHHHHHcCC----Ccc---cc--chhHHHHHHHcCCCC
Confidence 799999999999998654 222 12 233789999999964
No 182
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=31.66 E-value=1.3e+02 Score=20.88 Aligned_cols=46 Identities=13% Similarity=0.165 Sum_probs=32.7
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
.+++|.-|+|.++| +.+ |++++.+-+. |+.-.......|-+.++..
T Consensus 121 ~~d~R~yGiGAQIL--------~dL-GV~~~rLLtn--~~~k~~~L~g~gleVv~~~ 166 (191)
T TIGR00505 121 PADERDFSLCADIL--------EDL-GVKKVRLLTN--NPKKIEILKKAGINIVERV 166 (191)
T ss_pred cccceehhHHHHHH--------HHc-CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 44689999998766 455 9999877554 5555666777777776554
No 183
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=31.54 E-value=1.3e+02 Score=19.65 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=19.3
Q ss_pred CccEEEEEeeccChhhHHHHHHcCCcee
Q 029943 130 HLERLEALVDVENVGSQKVLLKAGFMQE 157 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k~Gf~~~ 157 (185)
|++.+++.+.+. +|.+++++.|=...
T Consensus 67 gv~~vyA~viS~--~Al~~L~~~gI~v~ 92 (134)
T PF08973_consen 67 GVKEVYADVISE--PALDLLEEAGIKVS 92 (134)
T ss_dssp --SEEEEEEEEH--HHHHHHHHTT--EE
T ss_pred cHHHHHHHHHhH--HHHHHHHHcCCcee
Confidence 899999999885 79999999996554
No 184
>cd08346 PcpA_N_like N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=31.13 E-value=91 Score=18.85 Aligned_cols=28 Identities=4% Similarity=0.006 Sum_probs=18.4
Q ss_pred cEEEEEeeccChhhHHHHHH-cCCceeeee
Q 029943 132 ERLEALVDVENVGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~ 160 (185)
..|.+.| .+=..|++||++ +||+.....
T Consensus 3 ~hv~l~v-~d~~~a~~FY~~~lG~~~~~~~ 31 (126)
T cd08346 3 HHVTLIT-RDAQETVDFYTDVLGLRLVKKT 31 (126)
T ss_pred ccEEEEc-CChhHhHHHHHHccCCEEeeeE
Confidence 3444443 333588999986 799876654
No 185
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=31.04 E-value=1.6e+02 Score=19.56 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=35.8
Q ss_pred HHH-HHHHHHHHHHHhhCCCccEEEEEe-----------eccChhhHHHHHHcCCceeeee
Q 029943 112 IAT-RAVKMASDAIFAEWPHLERLEALV-----------DVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 112 ~g~-~ll~~~~~~a~~~~~~~~~i~~~~-----------~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
++. .+.+.+.+.+ .+. |+..|...+ -+....|++-+.+.|+......
T Consensus 72 yAAq~aa~~~a~k~-~~~-Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~I~ 130 (149)
T PTZ00129 72 YAAMMAAQDVAARC-KEL-GINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGRIE 130 (149)
T ss_pred HHHHHHHHHHHHHH-HHc-CCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 443 4445555666 456 999999998 5778899999999999987764
No 186
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=31.04 E-value=2.6e+02 Score=21.84 Aligned_cols=88 Identities=10% Similarity=0.065 Sum_probs=58.0
Q ss_pred cEEEEEECCeeEEEEEEEecCCCCCce------------------------------EEEEEEECcCccCcCHHHHHHHH
Q 029943 70 WFMAICVNNRAIGAISVSANQGNDKCR------------------------------GEIGYVLGSKYWGKGIATRAVKM 119 (185)
Q Consensus 70 ~~~~i~~~~~~vG~~~~~~~~~~~~~~------------------------------~~~~~~v~~~~rg~G~g~~ll~~ 119 (185)
...++..+|++||.+-++...+..... ..-.+.+++......+...|++.
T Consensus 45 ~hl~~~~~~~lvaa~P~YlK~hS~GEyvFD~~Wa~a~~r~g~~YYPKlv~avPfTPv~G~R~l~~~~~~~~~~~~~L~~~ 124 (370)
T PF04339_consen 45 RHLTLRDGGRLVAAAPLYLKSHSYGEYVFDWAWADAYQRAGLRYYPKLVGAVPFTPVTGPRLLIAPGADRAALRAALLQA 124 (370)
T ss_pred eEEEEEECCEEEEEeeeeeecccCcceehhHHHHHHHHHhccccCcceEeeeCCCCCcccceeECCCCCHHHHHHHHHHH
Confidence 445666689999999887654331100 00024466777777888999999
Q ss_pred HHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 120 ASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 120 ~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
+.+.+ ++. ++..+.+.- ++ +.-...++..||....-..
T Consensus 125 ~~~~a-~~~-~~Ss~h~lF-~~-~~~~~~l~~~G~~~r~~~q 162 (370)
T PF04339_consen 125 LEQLA-EEN-GLSSWHILF-PD-EEDAAALEEAGFLSRQGVQ 162 (370)
T ss_pred HHHHH-HHc-CCCcceeec-CC-HHHHHHHHhCCCceecCCc
Confidence 99999 445 888877642 32 3455778999998755443
No 187
>PRK12303 tumor necrosis factor alpha-inducing protein; Reviewed
Probab=30.97 E-value=1.1e+02 Score=19.63 Aligned_cols=50 Identities=14% Similarity=0.281 Sum_probs=37.4
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeee
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~ 159 (185)
+.+..+++-.+.+-..+.+-+++++...+.+.|+...++.+..||.....
T Consensus 103 qkitnemfiqmtqpiydslmnvdrlgiyinpnneevfalvrargfdkdal 152 (192)
T PRK12303 103 QKITNEMFIQMTQPIYDSLMNVDRLGIYINPNNEEVFALVRARGFDKDAL 152 (192)
T ss_pred HHHhHHHHHHhccHHHHHhhcchheeeeeCCCcHHHHHHHHHhcCCHHHH
Confidence 45555666666554444433788999999999999999999999987554
No 188
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=30.89 E-value=70 Score=23.02 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=29.4
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+--|...+..+++++ .++ |++.|++++++.
T Consensus 24 ~~~~GH~~G~~~l~~i~~~~-~~l-gIk~lTvYaFS~ 58 (233)
T PRK14841 24 PRIKGHQRGAEVLHNTVKWS-LEL-GIKYLTAFSFST 58 (233)
T ss_pred chhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEEeeeH
Confidence 55668888999999999999 556 999999998765
No 189
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=30.86 E-value=1.5e+02 Score=20.68 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=33.2
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
.+++|.-|+|.++| +.+ |++++.+-+. |+.-..-....|.+.++..
T Consensus 124 ~~d~R~yGiGAQIL--------~dL-GV~~mrLLtn--~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 124 AADERDYTLAADML--------KAL-GVKKVRLLTN--NPKKVEALTEAGINIVERV 169 (197)
T ss_pred CccceehhHHHHHH--------HHc-CCCEEEECCC--CHHHHHHHHhCCCEEEEEe
Confidence 55689999998766 445 9999876543 5555666778888887654
No 190
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=30.65 E-value=69 Score=22.82 Aligned_cols=35 Identities=6% Similarity=-0.027 Sum_probs=29.0
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
|...|+--|.+.+..+++++ ... |++.+++++.+.
T Consensus 21 ~~~~GH~~G~~~~~~i~~~~-~~~-gI~~lTvyaFS~ 55 (221)
T cd00475 21 DRIEGHKAGAEKLRDILRWC-LEL-GVKEVTLYAFST 55 (221)
T ss_pred ChhHhHHHHHHHHHHHHHHH-HHc-CCCEEEEEeech
Confidence 55667788999999999999 455 999999998765
No 191
>PF06559 DCD: 2'-deoxycytidine 5'-triphosphate deaminase (DCD); InterPro: IPR010550 This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (3.5.4.13 from EC).; GO: 0008829 dCTP deaminase activity; PDB: 2R9Q_C.
Probab=29.96 E-value=27 Score=26.54 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=13.6
Q ss_pred ECCeeEEEEEEEecCCCCCceEEEEEEECcCccCcCH
Q 029943 76 VNNRAIGAISVSANQGNDKCRGEIGYVLGSKYWGKGI 112 (185)
Q Consensus 76 ~~~~~vG~~~~~~~~~~~~~~~~~~~~v~~~~rg~G~ 112 (185)
.+|++||=..+.+-...+. ..-|-.+...|||||+
T Consensus 322 ehGQ~vgrLvyE~m~~~P~--~lYG~~~gSnYq~QgL 356 (364)
T PF06559_consen 322 EHGQIVGRLVYERMAERPE--RLYGAGIGSNYQGQGL 356 (364)
T ss_dssp ETT-EEEEEEEEEBSS------TTSS-----------
T ss_pred eCCcEEEEEEehhhccCcc--ccccccccccchhhhh
Confidence 3899999999988765543 1112337899999986
No 192
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=29.84 E-value=1.7e+02 Score=22.49 Aligned_cols=38 Identities=16% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHhhCCCccE-EEEEeeccChhhHHHHHHcCCceee
Q 029943 121 SDAIFAEWPHLER-LEALVDVENVGSQKVLLKAGFMQEG 158 (185)
Q Consensus 121 ~~~a~~~~~~~~~-i~~~~~~~N~~a~~~y~k~Gf~~~~ 158 (185)
+..+.+..|+++- +...+...|..+.+||.+.|.+.+-
T Consensus 104 i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvV 142 (347)
T COG0826 104 IMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVV 142 (347)
T ss_pred HHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEE
Confidence 3444343323332 5667888999999999999966543
No 193
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.77 E-value=63 Score=23.41 Aligned_cols=36 Identities=14% Similarity=-0.009 Sum_probs=29.5
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEee-ccC
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVD-VEN 142 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~-~~N 142 (185)
+...|+--|...+..+++++ ... |++.|++++. .+|
T Consensus 35 ~~~~GH~~G~~~l~~iv~~c-~~~-gI~~vTvYaFS~eN 71 (243)
T PRK14829 35 KRTEGHKAGEPVLFDVVAGA-IEA-GVPYLSLYTFSTEN 71 (243)
T ss_pred ChhHHHHHHHHHHHHHHHHH-HHc-CCCEEEEeeecchh
Confidence 45667888999999999999 555 9999999998 444
No 194
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=29.56 E-value=1.3e+02 Score=21.05 Aligned_cols=50 Identities=12% Similarity=0.101 Sum_probs=36.0
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
.+.-.+++|.-|+|.+++ +.+ |+++|.+-+. |+.-+.-.+..|-....+.
T Consensus 119 ~lg~~~D~R~ygigAqIL--------~dL-GI~~irLLtn--np~K~~~l~~~Gi~vverv 168 (193)
T COG0807 119 ALGFPADERDYGIGAQIL--------KDL-GIKKIRLLTN--NPRKIYGLEGFGINVVERV 168 (193)
T ss_pred hhcCCchHHHHHHHHHHH--------HHc-CCcEEEEecC--ChHHHHHHHhCCceEEEEe
Confidence 344568889999998665 445 9999988654 7776777788886655544
No 195
>PRK10291 glyoxalase I; Provisional
Probab=29.15 E-value=59 Score=20.25 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=14.1
Q ss_pred hhhHHHHHH-cCCceeeee
Q 029943 143 VGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~~~ 160 (185)
.+|++||++ +||+.....
T Consensus 8 e~s~~FY~~~LG~~~~~~~ 26 (129)
T PRK10291 8 QRSIDFYTNVLGMKLLRTS 26 (129)
T ss_pred HHHHHHHHhccCCEEEEee
Confidence 579999966 999876543
No 196
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=29.10 E-value=1.1e+02 Score=23.69 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=22.5
Q ss_pred hhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 126 AEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 126 ~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+.+ |+++|.+-+ |+.-+.-++..|.+.+++.
T Consensus 332 ~~L-gv~~irLlT---np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 332 RDL-GVGKMRLLS---SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHc-CCCeEEECC---CcHHHHhhhhCCcEEEEEe
Confidence 455 899998875 5666667788888877553
No 197
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=29.05 E-value=64 Score=23.55 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=29.3
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
|...|+--|.+.+..+++++. +. |++.+++.+.+.
T Consensus 39 ~~~~GH~~G~~~l~~i~~~c~-~~-gI~~lTvyaFS~ 73 (253)
T PRK14832 39 PRIAGHRQGARTLKELLRCCK-DW-GIKALTAYAFST 73 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEeeh
Confidence 556678889999999999994 55 999999998765
No 198
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=28.49 E-value=63 Score=23.17 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.6
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+-.|...+..+++++ .+. |++.|++++++.
T Consensus 14 ~~~~GH~~G~~~l~~i~~~c-~~~-GI~~lT~yaFS~ 48 (229)
T PRK10240 14 IRAFGHKAGAKSVRRAVSFA-ANN-GIEALTLYAFSS 48 (229)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHc-CCCEEEEEeeeh
Confidence 44557778899999999999 555 999999998765
No 199
>KOG3014 consensus Protein involved in establishing cohesion between sister chromatids during DNA replication [Replication, recombination and repair]
Probab=28.36 E-value=86 Score=22.79 Aligned_cols=44 Identities=23% Similarity=0.128 Sum_probs=28.6
Q ss_pred EEEECcCccCcCHHHHHHHHHHHHHHhhCCCccE-EEEEeeccChh
Q 029943 100 GYVLGSKYWGKGIATRAVKMASDAIFAEWPHLER-LEALVDVENVG 144 (185)
Q Consensus 100 ~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~-i~~~~~~~N~~ 144 (185)
.+||.+..|++|+++.++..+......-. -+.+ =.+.+.|.+.+
T Consensus 188 RIWV~s~~Rr~gIAs~lldva~~~~~~g~-~isr~~iAfs~PTddG 232 (257)
T KOG3014|consen 188 RIWVSSLRRRKGIASLLLDVARCNFVYGE-VISREEIAFSDPTDDG 232 (257)
T ss_pred EEEeehhhhhhhhHHHHHHHHHHhhhhhc-ccchhheEecCCCchh
Confidence 46799999999999999988876531111 2222 23456666543
No 200
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=28.25 E-value=1e+02 Score=22.42 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=33.7
Q ss_pred ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccC
Q 029943 103 LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVEN 142 (185)
Q Consensus 103 v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N 142 (185)
+-|.|-..|+++..|+...+|....+ |-+.|.....+.-
T Consensus 151 ~vPnYNvMGvAKAaLEasvRyLA~dl-G~~gIRVNaISAG 189 (259)
T COG0623 151 VVPNYNVMGVAKAALEASVRYLAADL-GKEGIRVNAISAG 189 (259)
T ss_pred ecCCCchhHHHHHHHHHHHHHHHHHh-CccCeEEeeeccc
Confidence 67999999999999999999998888 8888888765543
No 201
>PF00903 Glyoxalase: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily This Prosite is specific to glyoxalases This Prosite is specific to Extradiol ring-cleavage dioxygenases This prints entry is specific to bleomycin resistance protein.; InterPro: IPR004360 Glyoxalase I (4.4.1.5 from EC) (lactoylglutathione lyase) catalyzes the first step of the glyoxal pathway. S-lactoylglutathione is then converted by glyoxalase II to lactic acid []. Glyoxalase I is an ubiquitous enzyme which binds one mole of zinc per subunit. The bacterial and yeast enzymes are monomeric while the mammalian one is homodimeric. The sequence of glyoxalase I is well conserved. The domain represented by this entry is found in glyoxalase I and in other related proteins, including fosfomycin resistance proteins FosB [], FosA [], FosX [] and dioxygenases (eg. 4-hydroxyphenylpyruvate dioxygenase).; PDB: 1CJX_A 1NPB_E 3OJT_C 3OJN_A 2IG9_B 3OJJ_B 3OJK_D 1Q0C_D 1F1X_C 3BZA_B ....
Probab=27.93 E-value=1.1e+02 Score=18.40 Aligned_cols=30 Identities=13% Similarity=0.040 Sum_probs=21.3
Q ss_pred ccEEEEEeeccChhhHHHHHH-cCCceeeeee
Q 029943 131 LERLEALVDVENVGSQKVLLK-AGFMQEGVLR 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~~ 161 (185)
++.|.+.|..- ..+++||++ +||+......
T Consensus 2 l~Hi~i~v~d~-~~~~~FY~~~lG~~~~~~~~ 32 (128)
T PF00903_consen 2 LDHIAIRVKDL-EKAIDFYTDVLGFRLVEESD 32 (128)
T ss_dssp EEEEEEEESCH-HHHHHHHHHTTTSEEEEEEE
T ss_pred eEEEEEEcCCH-HHHHHHHHHHhCCcEEeeec
Confidence 34455544333 488999998 8999988766
No 202
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=27.21 E-value=84 Score=22.62 Aligned_cols=35 Identities=14% Similarity=0.061 Sum_probs=28.9
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+--|...+..+++++ ... |++.+++++.+.
T Consensus 25 ~~~~GH~~G~~~l~~~~~~c-~~~-gI~~lTvyaFS~ 59 (233)
T PRK14833 25 ARAAGHKKGVKTLREITIWC-ANH-KLECLTLYAFST 59 (233)
T ss_pred ChhhhHHHHHHHHHHHHHHH-HHc-CCCEEEEeecch
Confidence 45567888899999999999 555 999999998764
No 203
>PF10887 DUF2686: Protein of unknown function (DUF2686); InterPro: IPR021220 Some members in this family of proteins are annotated as yjfZ however currently no function is known.
Probab=27.09 E-value=2.2e+02 Score=20.40 Aligned_cols=80 Identities=11% Similarity=-0.033 Sum_probs=45.6
Q ss_pred CCeeEEEEEEEecCCCCC---ceEEEEEEECcCccCcCHHHH---HHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHH
Q 029943 77 NNRAIGAISVSANQGNDK---CRGEIGYVLGSKYWGKGIATR---AVKMASDAIFAEWPHLERLEALVDVENVGSQKVLL 150 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~---~~~~~~~~v~~~~rg~G~g~~---ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~ 150 (185)
.|+.||++.--+...... ....+.++|+.=.--.|++-. ++.++++.- -..+.-..|-+...++ +..++.
T Consensus 160 aGtTIGYi~TLP~~~~~~Ws~e~P~IDiYIDQi~TVtGVsNssGF~~AALLNAn-~~~g~dp~IGl~ayp~---tA~ihs 235 (276)
T PF10887_consen 160 AGTTIGYIVTLPVEMANCWSNELPRIDIYIDQIMTVTGVSNSSGFALAALLNAN-IGMGNDPIIGLEAYPG---TAEIHS 235 (276)
T ss_pred CcceeEEEEecchhhcccccccCCceeeEeeeeEEeeccccchhHHHHHHHhcc-ccCCCCCeeeeeeCCC---cHhhhh
Confidence 578999988766543321 125666776654444444332 233333332 2332334566666665 567899
Q ss_pred HcCCceeeee
Q 029943 151 KAGFMQEGVL 160 (185)
Q Consensus 151 k~Gf~~~~~~ 160 (185)
++||..+---
T Consensus 236 ~~Gy~viPgD 245 (276)
T PF10887_consen 236 KMGYEVIPGD 245 (276)
T ss_pred ccCceeCCCC
Confidence 9999876543
No 204
>cd08349 BLMA_like Bleomycin binding protein (BLMA) and similar proteins; BLMA confers bleomycin (Bm) resistance by directly binding to Bm. BLMA also called Bleomycin resistance protein, confers Bm resistance by directly binding to Bm. Bm is a glycopeptide antibiotic produced naturally by actinomycetes. It is a potent anti-cancer drug, which acts as a strong DNA-cutting agent, thereby causing cell death. BLMA is produced by actinomycetes to protect themselves against their own lethal compound. BLMA has two identically-folded subdomains, with the same alpha/beta fold; these two halves have no sequence similarity. BLMAs are dimers and each dimer binds to two Bm molecules at the Bm-binding pockets formed at the dimer interface; two Bm molecules are bound per dimer. BLMA belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. As for the large
Probab=27.08 E-value=62 Score=19.17 Aligned_cols=18 Identities=17% Similarity=-0.007 Sum_probs=15.0
Q ss_pred hhhHHHHHH-cCCceeeee
Q 029943 143 VGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~~~ 160 (185)
..+.+||++ +||+.....
T Consensus 10 ~~s~~FY~~~lg~~~~~~~ 28 (112)
T cd08349 10 ERSLAFYRDVLGFEVDWEH 28 (112)
T ss_pred HHHHHHHHhccCeEEEEEc
Confidence 478999999 999976654
No 205
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=26.88 E-value=2.2e+02 Score=19.63 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=52.0
Q ss_pred CCeeEEEEEEEecCCCCC-------------------------ceEEEEEEECcCccCcCHHHHHHHHHHHHHHhhCCCc
Q 029943 77 NNRAIGAISVSANQGNDK-------------------------CRGEIGYVLGSKYWGKGIATRAVKMASDAIFAEWPHL 131 (185)
Q Consensus 77 ~~~~vG~~~~~~~~~~~~-------------------------~~~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~~~~~ 131 (185)
+|++++.+++..-...+- ...|+|=. .-.+.|.++.++..+...+ ... |+
T Consensus 43 ~g~l~aa~G~r~A~~~~LFlEqYLd~piE~~l~~~~g~~v~R~~IvEvGnL---As~~~g~~~~l~~~l~~~L-~~~-g~ 117 (179)
T PF12261_consen 43 DGELVAAAGLRFASQEPLFLEQYLDQPIEQLLSRRFGRPVSRSQIVEVGNL---ASFSPGAARLLFAALAQLL-AQQ-GF 117 (179)
T ss_pred CCCEEEEEeecccCCCCcchhhhcCCcHHHHHHhhcCCCcchhheeEeech---hhcCcccHHHHHHHHHHHH-HHC-CC
Confidence 888999998887653210 00233222 2235889999999999988 444 88
Q ss_pred cEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 132 ERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+.+.. ....+-++++.|+|......-
T Consensus 118 ~w~vf---TaT~~lr~~~~rlgl~~~~La 143 (179)
T PF12261_consen 118 EWVVF---TATRQLRNLFRRLGLPPTVLA 143 (179)
T ss_pred CEEEE---eCCHHHHHHHHHcCCCceecc
Confidence 86644 456679999999999876543
No 206
>COG3543 Uncharacterized conserved protein [Function unknown]
Probab=26.50 E-value=1.2e+02 Score=19.60 Aligned_cols=37 Identities=16% Similarity=0.034 Sum_probs=25.3
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
-.-|+|+|+..+.+.-+-+.+.+-. .-..|.+-..++
T Consensus 13 mq~y~GkGYS~~FveN~d~I~~rL~-~ge~i~lV~g~D 49 (135)
T COG3543 13 MQGYQGKGYSPAFVENYDAIAERLK-AGEDIKLVDGPD 49 (135)
T ss_pred eeecccccCCHHHHHHHHHHHHHhh-cCCCeEEEeccc
Confidence 4679999999998888777775543 444455544444
No 207
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=26.36 E-value=57 Score=23.20 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=26.8
Q ss_pred CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 106 ~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
...|+..|.+.+..+++++. .. |++.|++.+.+.
T Consensus 16 ~~~Gh~~G~~~l~~i~~~~~-~~-gI~~lTvYaFS~ 49 (223)
T PF01255_consen 16 RSEGHRAGAEKLKEIVEWCL-EL-GIKYLTVYAFST 49 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HC-T-SEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEecc
Confidence 34566778899999999995 55 999999999874
No 208
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=26.27 E-value=1.9e+02 Score=19.93 Aligned_cols=49 Identities=8% Similarity=0.135 Sum_probs=34.9
Q ss_pred CcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccC--hhhHHHHHHcCCceeee
Q 029943 109 GKGIATRAVKMASDAIFAEWPHLERLEALVDVEN--VGSQKVLLKAGFMQEGV 159 (185)
Q Consensus 109 g~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N--~~a~~~y~k~Gf~~~~~ 159 (185)
+.-.-.++++.+++...+ . |...+...-.+.. ....+.++..||.....
T Consensus 17 ~~~T~P~vv~avv~~l~~-~-g~~~i~i~e~~~~~~~~~~~~~~~~G~~~~~~ 67 (206)
T PF04015_consen 17 GATTHPEVVRAVVEMLKE-A-GAKEIIIAESPGSGAADTREVFKRSGYEEIAE 67 (206)
T ss_pred CccCCHHHHHHHHHHHHH-c-CCCceEEEeCCCcchHhHHHHHHHcchhhHHH
Confidence 334456899999999854 4 7775555444443 57899999999998754
No 209
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=26.26 E-value=83 Score=22.77 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=29.2
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+-.|...+..+++++ .+. |++.|++++.+.
T Consensus 30 ~~~~GH~~G~~~l~~i~~~c-~~~-GI~~lTvYaFS~ 64 (239)
T PRK14839 30 PRLAGHRAGVEAIRRVVEAA-PDL-GIGTLTLYAFSS 64 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHc-CCCEEEEEEech
Confidence 55567888999999999999 555 999999998765
No 210
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=26.25 E-value=82 Score=23.92 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=29.3
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+-.|.+.+..+++++ .+. |++.+++++++.
T Consensus 40 ~~~~GH~~G~~~l~~il~~c-~~l-GIk~lTlYAFSt 74 (322)
T PTZ00349 40 HSAIGHFMGSKALIQIIEIC-IKL-KIKILSVFSFSL 74 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHc-CCCEEEEEEeeh
Confidence 45558888999999999999 555 999999988765
No 211
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=26.14 E-value=1.8e+02 Score=22.87 Aligned_cols=48 Identities=17% Similarity=0.135 Sum_probs=35.7
Q ss_pred ECcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 103 LGSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 103 v~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
..+++|.-|+|.++| +.+ |+++|.+-+ +|+.-+.-.+..|.+..+..+
T Consensus 309 ~~~D~RdygigAqIL--------~dL-GV~~irLLT--Nnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 309 FKEDERDYAAAFQIL--------KAL-GIEKVRLLT--NNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred CCccceeeeHHHHHH--------HHc-CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 456788888887655 455 999887654 577777888899999887653
No 212
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=25.79 E-value=1.7e+02 Score=24.19 Aligned_cols=47 Identities=13% Similarity=0.143 Sum_probs=32.6
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.++.|.-|+|.+++ +.+ |+++|.+-+ +|+.-+.-.+..|.++++..+
T Consensus 333 ~~D~RdYgigAQIL--------~dL-GI~kIrLLT--NNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 333 PADLRNYGVGAQIL--------NDL-GIKRLRLIT--NNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred cccceehhHHHHHH--------HHc-CCCEEEECC--CCHHHHHHHHhCCCEEEEEec
Confidence 34455555554433 455 899987754 588788888999999887764
No 213
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=25.77 E-value=1.5e+02 Score=21.77 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=28.0
Q ss_pred CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 106 ~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
...|+--|-..+..+++++ ..+ |++.|++.+++-
T Consensus 58 ~~~GH~aGf~~l~~ile~C-~~l-GI~~vT~fAFSi 91 (271)
T KOG1602|consen 58 TSEGHEAGFEALKEILELC-KEL-GIKEVTVFAFSI 91 (271)
T ss_pred cccchHHHHHHHHHHHHHH-HHc-CCcEEEEEEEeh
Confidence 3667778889999999999 566 999999988653
No 214
>cd07240 ED_TypeI_classII_N N-terminal domain of type I, class II extradiol dioxygenases; non-catalytic domain. This family contains the N-terminal, non-catalytic, domain of type I, class II extradiol dioxygenases. Dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. Two major groups of dioxygenases have been identified according to the cleavage site; extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon, whereas intradiol enzymes cleave the aromatic ring between two hydroxyl groups. Extradiol dioxygenases are classified into type I and type II enzymes. Type I extradiol dioxygenases include class I and class II enzymes. These two classes of enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. The extradiol dioxygenases represented in this fa
Probab=25.67 E-value=79 Score=18.91 Aligned_cols=21 Identities=5% Similarity=-0.171 Sum_probs=16.4
Q ss_pred ChhhHHHHHH-cCCceeeeeee
Q 029943 142 NVGSQKVLLK-AGFMQEGVLRK 162 (185)
Q Consensus 142 N~~a~~~y~k-~Gf~~~~~~~~ 162 (185)
=..+++||++ +||........
T Consensus 13 ~~~~~~FY~~~lg~~~~~~~~~ 34 (117)
T cd07240 13 LERALEFYTDVLGLTVLDRDAG 34 (117)
T ss_pred HHHHHHHHHhccCcEEEeecCC
Confidence 3589999999 99998766533
No 215
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=25.55 E-value=86 Score=22.86 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=28.9
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+--|...+..+++++. .. |++.|++++.+.
T Consensus 43 ~~~~GH~~G~~~l~~v~~~c~-~~-GIk~lTvYaFS~ 77 (250)
T PRK14840 43 RAISGHYYGAKSLPQIVDTAL-HL-GIEVLTLFAFST 77 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEeeh
Confidence 455677789999999999995 55 999999998765
No 216
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.31 E-value=1.7e+02 Score=17.79 Aligned_cols=46 Identities=7% Similarity=0.052 Sum_probs=25.9
Q ss_pred CcceeeeccCCCCCCHHHHHHHHHhccCCCCcEEEEEECCeeEEEE
Q 029943 39 DDKVTHFCSYGPYTSREQGIKHIENKVIPHPWFMAICVNNRAIGAI 84 (185)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~ 84 (185)
.+....|..-......+..+++.++..++.-.+-++..++++||-+
T Consensus 43 ~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPlivvedeiVaeG 88 (106)
T COG4837 43 QPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPLIVVEDEIVAEG 88 (106)
T ss_pred CCcEEEEEEcCCCccHHHHHHHHHHHhcccccceEEEEcceEeecC
Confidence 3444455444333345555666666665544555566688888754
No 217
>PF02794 HlyC: RTX toxin acyltransferase family; InterPro: IPR003996 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior []. Four principal exotoxin secretion systems have been described. In the type II and IV secretion systems, toxins are first exported to the periplasm by way of a cleaved N-terminal signal sequence; a second set of proteins is used for extracellular transport (type II), or the C terminus of the exotoxin itself is used (type IV). Type III secretion involves at least 20 molecules that assemble into a needle; effector proteins are then translocated through this without need of a signal sequence. In the Type I system, a complete channel is formed through both membranes, and the secretion signal is carried on the C terminus of the exotoxin. The RTX (repeats in toxin) family of cytolytic toxins belong to the Type I secretion system, and are important virulence factors in Gram-negative bacteria. As well as the C-terminal signal sequence, several glycine-rich repeats are also found. These are essential for binding calcium, and are critical for the biological activity of the secreted toxins []. All RTX toxin operons exist in the order rtxCABD, RtxA protein being the structural component of the exotoxin, both RtxB and D being required for its export from the bacterial cell; RtxC is an acyl-carrier-protein-dependent acyl- modification enzyme, required to convert RtxA to its active form []. Escherichia coli haemolysin (HlyA) is often quoted as the model for RTX toxins. Recent work on its relative rtxC gene product HlyC [] has revealed that it provides the acylation aspect for post-translational modification of two internal lysine residues in the HlyA protein. Other residues, including His23 and two conserved tyrosine residues, also appear to be important []. ; GO: 0016746 transferase activity, transferring acyl groups, 0009404 toxin metabolic process, 0005737 cytoplasm
Probab=25.19 E-value=1.9e+02 Score=18.77 Aligned_cols=38 Identities=5% Similarity=-0.126 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHhccCCCCcEEEEEECCeeEEEEEEEecC
Q 029943 52 TSREQGIKHIENKVIPHPWFMAICVNNRAIGAISVSANQ 90 (185)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vG~~~~~~~~ 90 (185)
.+..+...++--.+..+.+.++. .+|.+|||++-...+
T Consensus 19 ~~l~~l~~~~lpai~~~Q~~l~~-~~g~Pvaf~~WA~ls 56 (133)
T PF02794_consen 19 WPLSDLEQLLLPAIKLGQYRLYS-EDGRPVAFCSWAFLS 56 (133)
T ss_pred CcHHHHHHHHHHHHhhCcEEEEE-eCCeEEEEEEhhcCC
Confidence 46667777776666655544444 699999999965433
No 218
>cd07253 Glo_EDI_BRP_like_2 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=24.00 E-value=1.1e+02 Score=18.42 Aligned_cols=31 Identities=6% Similarity=0.053 Sum_probs=21.6
Q ss_pred CccEEEEEeeccChhhHHHHHH-cCCceeeeee
Q 029943 130 HLERLEALVDVENVGSQKVLLK-AGFMQEGVLR 161 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~~ 161 (185)
++..+.+.| ++=.++++||++ +||.......
T Consensus 3 ~l~hi~l~v-~d~~~s~~Fy~~~lG~~~~~~~~ 34 (125)
T cd07253 3 RIDHVVLTV-ADIEATLDFYTRVLGMEVVRFGE 34 (125)
T ss_pred ccceEEEEe-cCHHHHHHHHHHHhCceeecccc
Confidence 455666655 334589999999 8999876543
No 219
>cd07263 Glo_EDI_BRP_like_16 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=23.78 E-value=74 Score=18.94 Aligned_cols=19 Identities=11% Similarity=0.059 Sum_probs=15.4
Q ss_pred ChhhHHHHHH-cCCceeeee
Q 029943 142 NVGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 142 N~~a~~~y~k-~Gf~~~~~~ 160 (185)
=.++.+||++ +||+.....
T Consensus 9 ~~~~~~fY~~~lG~~~~~~~ 28 (119)
T cd07263 9 QDKALAFYTEKLGFEVREDV 28 (119)
T ss_pred HHHHHHHHHhccCeEEEEee
Confidence 3578999998 999987664
No 220
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.51 E-value=82 Score=23.61 Aligned_cols=36 Identities=17% Similarity=0.098 Sum_probs=29.0
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEee-ccC
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVD-VEN 142 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~-~~N 142 (185)
+...|+-.|.+.+..++++| .++ |++.|+++++ .+|
T Consensus 88 ~~~~GH~~G~~~l~~v~~~c-~~l-GI~~lTvYaFStEN 124 (296)
T PRK14827 88 ARTEGHKMGEAVVIDIACGA-IEL-GIKWLSLYAFSTEN 124 (296)
T ss_pred CHhHHHHHHHHHHHHHHHHH-HHc-CCCEEEEeeecchh
Confidence 45567777899999999999 555 9999999998 344
No 221
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=23.47 E-value=1.2e+02 Score=22.07 Aligned_cols=43 Identities=12% Similarity=0.058 Sum_probs=35.5
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCc
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFM 155 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~ 155 (185)
-|+|+.-+.+.+.++.... |.+.+-...++.| +.++.=...+.
T Consensus 11 GGvG~TTltAnLA~aL~~~-G~~VlaID~dpqN--~Lrlhfg~~~~ 53 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARL-GESVLAIDLDPQN--LLRLHFGLPLD 53 (243)
T ss_pred CCCCHHHHHHHHHHHHHHC-CCcEEEEeCCcHH--HHHHhcCCCCc
Confidence 3999999999999999998 9998888999888 55666555554
No 222
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=23.29 E-value=33 Score=14.70 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=8.9
Q ss_pred EeecCCccCHHHHHHh
Q 029943 21 SLRPMDLSDVDDFMVW 36 (185)
Q Consensus 21 ~ir~~~~~D~~~l~~l 36 (185)
.+-|+.++|+..+.++
T Consensus 6 nmmPMSPddy~~l~~~ 21 (23)
T PF12162_consen 6 NMMPMSPDDYDELERM 21 (23)
T ss_dssp S---S-HHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHh
Confidence 3567888888877765
No 223
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.14 E-value=1e+02 Score=22.39 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=28.9
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+--|...+..+++++ ... |++.|++++.+.
T Consensus 31 ~~~~GH~~G~~~l~~i~~~~-~~~-gI~~lT~YaFS~ 65 (242)
T PRK14838 31 ERSFGHQAGAETVHIITEEA-ARL-GVKFLTLYTFST 65 (242)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHc-CCCEEEEEeech
Confidence 45567788899999999999 555 999999998765
No 224
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=23.03 E-value=96 Score=22.99 Aligned_cols=35 Identities=9% Similarity=0.039 Sum_probs=27.7
Q ss_pred cCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 105 SKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 105 ~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
+...|+-.|...+..+++++. ++ |++.|++++++.
T Consensus 62 ~~~~GH~~G~~~l~~i~~~c~-~l-GIk~lTvYaFS~ 96 (275)
T PRK14835 62 QREMGHEFGVQKAYEVLEWCL-EL-GIPTVTIWVFST 96 (275)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEEEc
Confidence 344567778899999999994 55 999999987654
No 225
>PF07927 YcfA: YcfA-like protein; InterPro: IPR012933 This entry represents UPF0395, which contains viral, archaeal and bacterial proteins. It includes YncN of Escherichia coli K12. Most of these proteins are hypothetical proteins of unknown function. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1WHZ_A.
Probab=22.95 E-value=1.1e+02 Score=15.86 Aligned_cols=15 Identities=40% Similarity=0.372 Sum_probs=11.5
Q ss_pred hHHHHHHcCCceeee
Q 029943 145 SQKVLLKAGFMQEGV 159 (185)
Q Consensus 145 a~~~y~k~Gf~~~~~ 159 (185)
..++++++||+....
T Consensus 4 l~k~L~~~G~~~~r~ 18 (56)
T PF07927_consen 4 LIKLLEKAGFEEVRQ 18 (56)
T ss_dssp HHHHHHHTT-EEEEE
T ss_pred HHHHHHHCCCEEecC
Confidence 578999999998854
No 226
>cd08347 PcpA_C_like C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=22.42 E-value=1.4e+02 Score=19.69 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=19.4
Q ss_pred ccEEEEEeeccChhhHHHHHH-cCCceeeeee
Q 029943 131 LERLEALVDVENVGSQKVLLK-AGFMQEGVLR 161 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~~ 161 (185)
+..|.+.|. +=..|.+||++ +||+......
T Consensus 2 l~HI~i~V~-Dle~s~~FY~~~LG~~~~~~~~ 32 (157)
T cd08347 2 LHGVTLTVR-DPEATAAFLTDVLGFREVGEEG 32 (157)
T ss_pred cccEEEEeC-CHHHHHHHHHHhcCCEEEeeeC
Confidence 444555443 33688999966 6999876543
No 227
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=22.36 E-value=2e+02 Score=23.16 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=31.4
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.+++|.-|+|.++| +.+ |+++|.+-+ +|+.-+.-.+..|.+.++..+
T Consensus 363 ~~D~RdygigAqIL--------~dL-GI~~irLLT--NNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 363 PVDSREYGIGAQIL--------RDL-GVRTMRLMT--NNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred cccceehHHHHHHH--------HHc-CCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 34556666665444 445 888887654 477677778899988886653
No 228
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=22.36 E-value=1.8e+02 Score=22.66 Aligned_cols=31 Identities=10% Similarity=-0.045 Sum_probs=20.5
Q ss_pred hhCCCccEEEEEeeccChhhHHHHHHcCCceeeee
Q 029943 126 AEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 126 ~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
+.+ |+++|.+- +|+.-+.-++..|.+.++..
T Consensus 335 r~L-GV~kirLL---nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 335 QDL-GVGKLRHL---GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHc-CCCEEEEC---CCchhhhhhhhCCcEEEEEe
Confidence 455 88888876 45555666677777776543
No 229
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.07 E-value=1.3e+02 Score=22.11 Aligned_cols=32 Identities=6% Similarity=-0.125 Sum_probs=26.8
Q ss_pred cCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 108 WGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 108 rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
.|+--|...+..++++|. .. |++.|++++.+.
T Consensus 51 ~GH~~G~~~l~~~~~~~~-~~-gIk~lTvYaFS~ 82 (256)
T PRK14828 51 QGHRAGAAKIGEFLGWCD-ET-DVNVVTLYLLST 82 (256)
T ss_pred HHHHHHHHHHHHHHHHHH-Hc-CCCEEEEEEEEh
Confidence 677788999999999995 55 999999988743
No 230
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=21.99 E-value=1.4e+02 Score=21.19 Aligned_cols=37 Identities=8% Similarity=-0.122 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHH
Q 029943 110 KGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLK 151 (185)
Q Consensus 110 ~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k 151 (185)
-|.|+.-+..++. +++ + ..+..+...+|+-.-.||++
T Consensus 13 IG~GKSTLa~~La---~~l-~-~~~~~E~vednp~L~~FY~d 49 (216)
T COG1428 13 IGAGKSTLAQALA---EHL-G-FKVFYELVEDNPFLDLFYED 49 (216)
T ss_pred cccCHHHHHHHHH---HHh-C-CceeeecccCChHHHHHHHh
Confidence 3778877766654 566 7 56778889999999999876
No 231
>cd08364 FosX FosX, a fosfomycin resistance protein, catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of configuration at C1. This subfamily family contains FosX, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-Nacetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosX catalyzes the addition of a water molecule to the C1 position of the antibiotic with inversion of the configuration at C1 in the presence of Mn(II). The hydrated fosfomycin loses the inhibition activity. FosX is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.97 E-value=1.6e+02 Score=18.43 Aligned_cols=29 Identities=10% Similarity=-0.008 Sum_probs=20.6
Q ss_pred CccEEEEEeeccChhhHHHHHH-cCCceeee
Q 029943 130 HLERLEALVDVENVGSQKVLLK-AGFMQEGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~ 159 (185)
++..+.+.| ++-..|++||++ +||.....
T Consensus 4 ~i~hv~l~V-~dl~~s~~FY~~~lG~~~~~~ 33 (131)
T cd08364 4 GLSHITLIV-KDLNKTTAFLQNIFNAREVYS 33 (131)
T ss_pred cEeEEEEEe-CCHHHHHHHHHHHhCCeeEEe
Confidence 566666665 455689999977 99976543
No 232
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=21.78 E-value=2.3e+02 Score=19.51 Aligned_cols=32 Identities=25% Similarity=0.354 Sum_probs=22.9
Q ss_pred cEEEEEeeccChhhHHHHHHcCCceeeeeeeee
Q 029943 132 ERLEALVDVENVGSQKVLLKAGFMQEGVLRKYF 164 (185)
Q Consensus 132 ~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~~~~ 164 (185)
..+...+. +-..++.+++++||...+..++..
T Consensus 79 ~E~E~~v~-D~~~~~~il~~LGF~~~~~VkK~R 110 (178)
T COG1437 79 EEIEIEVS-DVEKALEILKRLGFKEVAVVKKTR 110 (178)
T ss_pred eeEEEEeC-CHHHHHHHHHHcCCceeeEEEEEE
Confidence 44555554 334689999999999988876643
No 233
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=21.73 E-value=2.2e+02 Score=20.02 Aligned_cols=25 Identities=20% Similarity=0.112 Sum_probs=18.6
Q ss_pred EEeeccChhhHHHHHHcCCceeeee
Q 029943 136 ALVDVENVGSQKVLLKAGFMQEGVL 160 (185)
Q Consensus 136 ~~~~~~N~~a~~~y~k~Gf~~~~~~ 160 (185)
..+...|..+.+||+..|+...-..
T Consensus 43 ~~~nv~N~~s~~~~~~~G~~~i~ls 67 (233)
T PF01136_consen 43 YSLNVFNSESARFLKELGASRITLS 67 (233)
T ss_pred cCccCCCHHHHHHHHHcCCCEEEEC
Confidence 3456778889999999988765543
No 234
>cd08359 Glo_EDI_BRP_like_22 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.47 E-value=1.3e+02 Score=18.05 Aligned_cols=22 Identities=9% Similarity=0.153 Sum_probs=14.9
Q ss_pred eeccC-hhhHHHHHH-cCCceeee
Q 029943 138 VDVEN-VGSQKVLLK-AGFMQEGV 159 (185)
Q Consensus 138 ~~~~N-~~a~~~y~k-~Gf~~~~~ 159 (185)
+...| .+|..||.+ +||+....
T Consensus 7 l~v~D~~~s~~FY~~~lG~~~~~~ 30 (119)
T cd08359 7 IVTDDLAETADFYVRHFGFTVVFD 30 (119)
T ss_pred EEECCHHHHHHHHHHhhCcEEEec
Confidence 33334 378999964 99987654
No 235
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=21.36 E-value=2.8e+02 Score=18.99 Aligned_cols=45 Identities=11% Similarity=-0.048 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHhhCCCccEEEEEeeccChhh---HHHHHHcCCceee
Q 029943 112 IATRAVKMASDAIFAEWPHLERLEALVDVENVGS---QKVLLKAGFMQEG 158 (185)
Q Consensus 112 ~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a---~~~y~k~Gf~~~~ 158 (185)
-+..+...+++.+.+. +.+-+.=.+..+-... ++.+++.||...-
T Consensus 77 ~a~~~~~~~~~~a~~~--~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l 124 (199)
T PF06414_consen 77 EASRLAEKLIEYAIEN--RYNIIFEGTLSNPSKLRKLIREAKAAGYKVEL 124 (199)
T ss_dssp HHHHHHHHHHHHHHHC--T--EEEE--TTSSHHHHHHHHHHHCTT-EEEE
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEecCCCChhHHHHHHHHHHcCCceEEE
Confidence 4567888888888666 6665554444433333 3577888997544
No 236
>TIGR03645 glyox_marine lactoylglutathione lyase family protein. Members of this protein family share homology with lactoylglutathione lyase (glyoxalase I) and are found mainly in marine members of the gammaproteobacteria, including CPS_0532 from Colwellia psychrerythraea 34H. This family excludes a well-separated, more narrowly distributed paralogous family, exemplified by CPS_3492 from C. psychrerythraea. The function is of this protein family is unknown.
Probab=21.35 E-value=1.3e+02 Score=19.91 Aligned_cols=27 Identities=11% Similarity=0.099 Sum_probs=18.7
Q ss_pred CccEEEEEeeccChhhHHHHHH-cCCcee
Q 029943 130 HLERLEALVDVENVGSQKVLLK-AGFMQE 157 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~ 157 (185)
++..|.+.| .+=.+|++||++ +||+..
T Consensus 4 ~i~Hv~i~V-~Dle~s~~FY~~~LG~~~~ 31 (162)
T TIGR03645 4 TFSHIGISV-PDLDAAVKFYTEVLGWYLI 31 (162)
T ss_pred eEEEEEEEe-CCHHHHHHHHHHhcCCEEE
Confidence 455566655 334689999977 899764
No 237
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=21.30 E-value=2.1e+02 Score=19.26 Aligned_cols=43 Identities=16% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCCccEEEEEe----eccChhhHHHHHHcCCceeeeee
Q 029943 117 VKMASDAIFAEWPHLERLEALV----DVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 117 l~~~~~~a~~~~~~~~~i~~~~----~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
++.++++| +.. |+++|-+-. ...-..-.++++..||......-
T Consensus 43 veEiieFa-k~m-gykkiGiAfCiGL~~EA~~~~~iL~~~gFev~sV~C 89 (157)
T PF08901_consen 43 VEEIIEFA-KRM-GYKKIGIAFCIGLRKEARILAKILEANGFEVYSVCC 89 (157)
T ss_pred HHHHHHHH-HHc-CCCeeeehhhHhHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 55677787 555 888876532 22223445677888998877543
No 238
>cd07264 Glo_EDI_BRP_like_15 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.15 E-value=1.5e+02 Score=17.98 Aligned_cols=16 Identities=13% Similarity=0.088 Sum_probs=13.0
Q ss_pred hhhHHHHHH-cCCceee
Q 029943 143 VGSQKVLLK-AGFMQEG 158 (185)
Q Consensus 143 ~~a~~~y~k-~Gf~~~~ 158 (185)
.+|.+||++ +||....
T Consensus 12 ~~s~~FY~~~lG~~~~~ 28 (125)
T cd07264 12 EKTLEFYERAFGFERRF 28 (125)
T ss_pred HHHHHHHHHhhCCeEEe
Confidence 588999988 7998753
No 239
>cd08355 Glo_EDI_BRP_like_14 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The structures of this family demonstrate domain swapping, which is shared by glyoxalase I and antibiotic resistance proteins.
Probab=21.06 E-value=1.1e+02 Score=18.53 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=15.9
Q ss_pred cChhhHHHHH-HcCCceeeee
Q 029943 141 ENVGSQKVLL-KAGFMQEGVL 160 (185)
Q Consensus 141 ~N~~a~~~y~-k~Gf~~~~~~ 160 (185)
+=.+|++||+ .+||+.....
T Consensus 9 d~~~a~~FY~~~lG~~~~~~~ 29 (122)
T cd08355 9 DAAAAIDWLTDAFGFEERLVV 29 (122)
T ss_pred CHHHHHHHHHHhcCCEEEEEE
Confidence 3358999998 9999987654
No 240
>cd07243 2_3_CTD_C C-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the C-terminal, catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the C-terminal domain.
Probab=20.96 E-value=99 Score=19.90 Aligned_cols=29 Identities=7% Similarity=0.027 Sum_probs=19.8
Q ss_pred ccEEEEEeeccChhhHHHHHH-cCCceeeee
Q 029943 131 LERLEALVDVENVGSQKVLLK-AGFMQEGVL 160 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~~ 160 (185)
+..+.+.|.. =.++.+||++ +||+.....
T Consensus 7 l~Hv~l~v~D-le~s~~FY~~vLGf~~~~~~ 36 (143)
T cd07243 7 LDHCLLTGED-IAETTRFFTDVLDFYLAERV 36 (143)
T ss_pred eCEEEEecCC-HHHHHHHHHHhcCCEEEEEE
Confidence 4556665543 3589999977 999876553
No 241
>cd07242 Glo_EDI_BRP_like_6 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.
Probab=20.68 E-value=1.8e+02 Score=17.73 Aligned_cols=28 Identities=18% Similarity=0.098 Sum_probs=19.1
Q ss_pred ccEEEEEeeccChhhHHHHHHc----CCceeee
Q 029943 131 LERLEALVDVENVGSQKVLLKA----GFMQEGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k~----Gf~~~~~ 159 (185)
+..|.+.| .+=.++.+||++. ||+....
T Consensus 2 i~Hv~i~v-~d~~~~~~Fy~~~l~~~G~~~~~~ 33 (128)
T cd07242 2 IHHVELTV-RDLERSRAFYDWLLGLLGFEEVKE 33 (128)
T ss_pred CceEEEEe-CCHHHHHHHHHHHHhhcCCEEEEe
Confidence 34455555 2335889999886 9997665
No 242
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=20.47 E-value=92 Score=18.99 Aligned_cols=29 Identities=14% Similarity=-0.030 Sum_probs=19.4
Q ss_pred CccEEEEEeeccChhhHHHHHH-cCCceeee
Q 029943 130 HLERLEALVDVENVGSQKVLLK-AGFMQEGV 159 (185)
Q Consensus 130 ~~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~ 159 (185)
++..+.+.|.. =.+|.+||++ +||+....
T Consensus 4 ~l~hv~l~v~D-l~~s~~FY~~~lG~~~~~~ 33 (122)
T cd07265 4 RPGHVQLRVLD-LEEAIKHYREVLGLDEVGR 33 (122)
T ss_pred eEeEEEEEeCC-HHHHHHHHHhccCCEeeee
Confidence 34455555432 3588999976 99987655
No 243
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=20.39 E-value=2.2e+02 Score=17.32 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=18.4
Q ss_pred ccEEEEEeeccChhhHHHHHH-cCCceeee
Q 029943 131 LERLEALVDVENVGSQKVLLK-AGFMQEGV 159 (185)
Q Consensus 131 ~~~i~~~~~~~N~~a~~~y~k-~Gf~~~~~ 159 (185)
+..+.+.|. +=..+++||++ +||+....
T Consensus 2 i~hv~l~v~-d~~~~~~FY~~vLG~~~~~~ 30 (121)
T cd07244 2 INHITLAVS-DLERSVAFYVDLLGFKLHVR 30 (121)
T ss_pred cceEEEEEC-CHHHHHHHHHHhcCCEEEEe
Confidence 344555542 23588999976 99987654
No 244
>PF14281 PDDEXK_4: PD-(D/E)XK nuclease superfamily
Probab=20.34 E-value=88 Score=21.01 Aligned_cols=30 Identities=17% Similarity=0.184 Sum_probs=21.6
Q ss_pred EEEEEEECcCccCcCHHHHHHHHHHHHHHhh
Q 029943 97 GEIGYVLGSKYWGKGIATRAVKMASDAIFAE 127 (185)
Q Consensus 97 ~~~~~~v~~~~rg~G~g~~ll~~~~~~a~~~ 127 (185)
..++|.++|. -.+|.|...++.+++.+...
T Consensus 18 ~~la~lLdp~-~~hg~~~~fl~~fl~~~~~~ 47 (179)
T PF14281_consen 18 NFLAWLLDPK-ESHGLGDLFLKSFLKALGEK 47 (179)
T ss_pred HHHHHHhCCc-cccccHHHHHHHHHHHhhhh
Confidence 3445667777 55789999999988776444
No 245
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=20.19 E-value=2.6e+02 Score=22.13 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=31.5
Q ss_pred CcCccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeeccChhhHHHHHHcCCceeeeee
Q 029943 104 GSKYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVENVGSQKVLLKAGFMQEGVLR 161 (185)
Q Consensus 104 ~~~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~N~~a~~~y~k~Gf~~~~~~~ 161 (185)
.++.|.-|+|.++| +.+ |+++|.+-+ +|+.=+.-++..|.+.++..+
T Consensus 329 ~~D~Rdyg~gaqIL--------~~L-Gv~~irLLT--nnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 329 PADARDYGIGAQIL--------VDL-GVRSMRLLT--NNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred CccceehhHHHHHH--------HHc-CCCEEEECC--CCHHHHHHHhhCCCEEEEEec
Confidence 44566666665444 445 888887754 477667777888888876653
No 246
>COG1324 CutA Uncharacterized protein involved in tolerance to divalent cations [Inorganic ion transport and metabolism]
Probab=20.05 E-value=2.3e+02 Score=17.56 Aligned_cols=37 Identities=11% Similarity=0.020 Sum_probs=28.0
Q ss_pred EEECcCcc-CcCHHHHHHHHHHHHHHhhCCCccEEEEE
Q 029943 101 YVLGSKYW-GKGIATRAVKMASDAIFAEWPHLERLEAL 137 (185)
Q Consensus 101 ~~v~~~~r-g~G~g~~ll~~~~~~a~~~~~~~~~i~~~ 137 (185)
+...|+.. ++.+|+.+++.=+..+..-.||+++++.+
T Consensus 7 l~T~pd~e~Ae~iar~lleerLaACvni~p~i~S~Y~W 44 (104)
T COG1324 7 LTTAPDEESAERIARKLLEERLAACVNIIPGIKSIYWW 44 (104)
T ss_pred EEeCCChHHHHHHHHHHHHHHhhhheecccCccEEEEE
Confidence 44567777 78899999998888887777667776654
No 247
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.03 E-value=1.2e+02 Score=22.17 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=27.4
Q ss_pred CccCcCHHHHHHHHHHHHHHhhCCCccEEEEEeecc
Q 029943 106 KYWGKGIATRAVKMASDAIFAEWPHLERLEALVDVE 141 (185)
Q Consensus 106 ~~rg~G~g~~ll~~~~~~a~~~~~~~~~i~~~~~~~ 141 (185)
...|+--|...+..++++| ... |++.+++++.+.
T Consensus 36 ~~~GH~~G~~~~~~iv~~c-~~~-gI~~lTvYaFS~ 69 (253)
T PRK14836 36 RVEGHRAGVRAVRRTIEFC-LEK-GIEMLTLFAFSS 69 (253)
T ss_pred hhhhHHHHHHHHHHHHHHH-HHc-CCCEEehhHhhh
Confidence 3447778889999999999 555 999999988654
No 248
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=20.02 E-value=2.4e+02 Score=20.90 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=9.4
Q ss_pred CCCHHHHHHHHHhccC
Q 029943 51 YTSREQGIKHIENKVI 66 (185)
Q Consensus 51 ~~~~~~~~~~~~~~~~ 66 (185)
..+.+..++++.-...
T Consensus 28 g~~t~~~k~yIDfAa~ 43 (273)
T PF10566_consen 28 GATTETQKRYIDFAAE 43 (273)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3466777777664433
Done!