Query 029944
Match_columns 185
No_of_seqs 137 out of 286
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:27:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029944.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029944hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_R 60S ribosomal protein L 100.0 3.2E-87 1.1E-91 556.4 16.1 183 1-183 1-183 (189)
2 4a1a_O RPL19, 60S ribosomal pr 100.0 3.9E-86 1.3E-90 548.3 14.6 179 1-179 1-179 (185)
3 3iz5_T 60S ribosomal protein L 100.0 2.4E-85 8.3E-90 550.9 18.2 181 1-182 1-181 (209)
4 2zkr_p 60S ribosomal protein L 100.0 4.2E-84 1.5E-88 540.0 14.9 183 1-183 1-183 (196)
5 4a17_O RPL19, 60S ribosomal pr 100.0 2.5E-81 8.5E-86 519.3 17.0 165 1-165 1-165 (185)
6 1vq8_P 50S ribosomal protein L 100.0 1.5E-76 5E-81 477.7 13.7 149 1-149 1-149 (149)
7 3j21_Q PFEL19, 50S ribosomal p 100.0 3.4E-76 1.2E-80 476.0 14.3 147 1-147 1-147 (150)
8 3jyw_P 60S ribosomal protein L 100.0 6.4E-72 2.2E-76 460.9 9.8 157 2-158 1-157 (176)
9 1fme_A FSD-EY peptide; beta-BE 68.5 1.7 6E-05 25.5 1.0 21 126-146 6-26 (28)
10 1ard_A Yeast transcription fac 23.9 30 0.001 16.9 1.1 17 129-145 9-25 (29)
11 2v7f_A RPS19, RPS19E SSU ribos 23.7 40 0.0014 26.2 2.2 33 25-57 86-118 (150)
12 2m0f_A Zinc finger and BTB dom 23.1 33 0.0011 16.7 1.1 17 129-145 9-25 (29)
13 1va1_A Transcription factor SP 22.7 36 0.0012 18.4 1.3 18 128-145 16-33 (37)
14 2ab3_A ZNF29; zinc finger prot 22.0 37 0.0013 16.6 1.2 15 129-143 11-25 (29)
15 1sp2_A SP1F2; zinc finger, tra 21.7 56 0.0019 16.5 1.9 16 129-144 11-26 (31)
16 2nn4_A Hypothetical protein YQ 21.5 49 0.0017 23.4 2.1 22 101-122 30-51 (72)
17 2m0d_A Zinc finger and BTB dom 21.2 53 0.0018 15.9 1.7 16 129-144 10-25 (30)
18 1rim_A E6APC2 peptide; E6-bind 20.3 69 0.0024 16.7 2.2 19 129-147 9-27 (33)
19 2kvh_A Zinc finger and BTB dom 20.2 53 0.0018 16.0 1.6 15 129-143 10-24 (27)
No 1
>3u5e_R 60S ribosomal protein L19-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_J 2ww9_J 3izc_T 3izs_T 2wwb_J 3o5h_S 3o58_S 3u5i_R 4b6a_R 1s1i_P
Probab=100.00 E-value=3.2e-87 Score=556.44 Aligned_cols=183 Identities=57% Similarity=0.951 Sum_probs=180.2
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (189)
T 3u5e_R 1 MANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGK 80 (189)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGCEECTTCHHHHHTCCSHHHHHHHHTTTSEECCCCCCCCTHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCCCeeecCHHHHHHHHhhhhHHHHHHHHHCCCeEecCccCCChhHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae 160 (185)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||++++|++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (189)
T 3u5e_R 81 RKGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIIQAKADAQREKALNEEAE 160 (189)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHhh
Q 029944 161 AKRAKNKASRERKLARREERLAQ 183 (185)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~kk~~ 183 (185)
|+++|++++++++++++|+++++
T Consensus 161 a~r~k~k~~~~r~~~~~~~k~~~ 183 (189)
T 3u5e_R 161 ARRLKNRAARDRRAQRVAEKRDA 183 (189)
T ss_dssp HHHHHHHHHHHHHHHTTTSSTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 2
>4a1a_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1c_O 4a1e_O
Probab=100.00 E-value=3.9e-86 Score=548.27 Aligned_cols=179 Identities=66% Similarity=1.043 Sum_probs=145.8
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAA~VL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdG~Ii~Kp~~~~Sr~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a1a_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCcccccChHHHHHHHhcccHHHHHHHHHCCCeeecCCCCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae 160 (185)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrriR~lRrlLr~~Re~~kID~h~Y~~LY~kaKGn~Fknk~~L~e~I~k~kae~~r~k~l~dqae 160 (185)
T 4a1a_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKADKIKSDKLTSQQE 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHTC-------------
T ss_pred cccchhccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHH
Q 029944 161 AKRAKNKASRERKLARREE 179 (185)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~ 179 (185)
|+++|++++++++++++|-
T Consensus 161 a~r~k~k~~r~~~~~~~~~ 179 (185)
T 4a1a_O 161 ARRAKNTASRAKRNEKAQI 179 (185)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999873
No 3
>3iz5_T 60S ribosomal protein L19 (L19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_T
Probab=100.00 E-value=2.4e-85 Score=550.91 Aligned_cols=181 Identities=91% Similarity=1.308 Sum_probs=177.7
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||+++|||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~AnsRq~IRkLIkdGlIi~Kpv~~hSR~R~r~~~~ar~kGRh~G~Gk 80 (209)
T 3iz5_T 1 MVSLKLQKRLASSVLKCGKGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPQKIHSRSRARRAHEAKQKGRHSGYGK 80 (209)
T ss_dssp CCCCHHHHHHHHHHHTSCTTTEEECSSSHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCHHHHHHHHHTTSSCCSCSSSS
T ss_pred CcchHHHHHHHHHHhCCCCCeeccChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCCChHHHHHHHHHHHhCCCCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae 160 (185)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.|+|++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~KaKGn~Fknk~~L~e~I~k~Kaek~r~k~l~dqae 160 (209)
T 3iz5_T 81 RRGTREARLPTKILWMRRMRVLRRLLRKYREAKKIDKHMYHDMYLKVKGNMFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (209)
T ss_dssp SCSCTTTTCCSHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHTTCCCSSSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHh
Q 029944 161 AKRAKNKASRERKLARREERLA 182 (185)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~kk~ 182 (185)
|+++|+++++++++++ .++.+
T Consensus 161 Arr~k~k~~r~rr~~r-~~~~~ 181 (209)
T 3iz5_T 161 AKRAKSKASRERKIAR-REERL 181 (209)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHh
Confidence 9999999999999999 44444
No 4
>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=4.2e-84 Score=539.97 Aligned_cols=183 Identities=66% Similarity=1.067 Sum_probs=148.4
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++|+||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus 1 M~~L~~QKRLAA~VL~cG~~rVWlDP~~~~eI~~A~sR~~IR~LIkdG~I~~Kp~~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (196)
T 2zkr_p 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSRARCRKNTLARRKGRHMGIGK 80 (196)
T ss_dssp --------CHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCC-CCHHHHHHHHHHHHTCCCC---
T ss_pred CcchHHHHHHHHHHHCCCcCceecChHHHHHHHHhhhHHHHHHHHHCCCeEecCcccccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae 160 (185)
|+||+|||||+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|++||++|||+.++|++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~LY~kaKGn~Fknk~~L~e~I~~~Kae~~r~k~l~~q~e 160 (196)
T 2zkr_p 81 RKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMYHSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAE 160 (196)
T ss_dssp ---CHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTC-----------------CHHHHHHHHHHHH
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchHHHHHHHHHHHHHHHhh
Q 029944 161 AKRAKNKASRERKLARREERLAQ 183 (185)
Q Consensus 161 A~r~k~k~~r~rr~~~~~~kk~~ 183 (185)
|++++++++++++++++++++++
T Consensus 161 a~r~k~k~~r~~r~~~~~~~~~~ 183 (196)
T 2zkr_p 161 ARRSKTKEARKRREERLQAKKEE 183 (196)
T ss_dssp HHHTTTHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877643
No 5
>4a17_O RPL19, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila}
Probab=100.00 E-value=2.5e-81 Score=519.30 Aligned_cols=165 Identities=64% Similarity=1.017 Sum_probs=162.0
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||++||||||||++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+|+||
T Consensus 1 M~~L~~QKRLAAsVL~cGk~rVWlDPne~~eIa~A~sR~~IRkLIkdGlIi~Kpv~~~SR~R~r~~~~ar~kGRh~G~Gk 80 (185)
T 4a17_O 1 MVSLRLQKRLAASVLKCGQKRLWLDPNESSEISMANSRASIRKLIKDGLVMKRSTVIHSRSRARAFLEAKRKGRHTGSGK 80 (185)
T ss_dssp -CCCHHHHHHHHHHHTSCGGGEEECSTTHHHHHHCCSHHHHHHHHHHTSEEECCCCCCCCHHHHHHHHHHHHTSSCCSTT
T ss_pred CcchHHHHHHHHHHhCCCCCeeecChHHHHHHHhcccHHHHHHHHHCCCEEeCCcccCChHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHHHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFE 160 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQae 160 (185)
|+||+|||||+|++||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||++++|++++++|+||||
T Consensus 81 RKGt~~AR~p~K~~WmrRiR~LRrlLr~~Re~~kID~h~Yr~LY~kaKGn~Fknk~~L~e~I~k~Kae~~r~k~l~dqae 160 (185)
T 4a17_O 81 RKGTRNARMPTKVLWMRRQRVLRRLLRKYRAAKKIDKHQYHEFYLGSKGNLYKNKTVLIEAIHVSKAXXXXXXXXXXXXX 160 (185)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCCChHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhhhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhc
Q 029944 161 AKRAK 165 (185)
Q Consensus 161 A~r~k 165 (185)
|.-.-
T Consensus 161 a~~~~ 165 (185)
T 4a17_O 161 XXXXX 165 (185)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 97543
No 6
>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.94.1.1 PDB: 1vq4_P* 1vq5_P* 1vq6_P* 1vq7_P* 1s72_P* 1vq9_P* 1vqk_P* 1vql_P* 1vqm_P* 1vqn_P* 1vqo_P* 1vqp_P* 1yhq_P* 1yi2_P* 1yij_P* 1yit_P* 1yj9_P* 1yjn_P* 1yjw_P* 2otj_P* ...
Probab=100.00 E-value=1.5e-76 Score=477.73 Aligned_cols=149 Identities=35% Similarity=0.577 Sum_probs=142.8
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||+++||||||+++||++||||+|||+||+||+|+++|++|||||||+++++++++|||+||||
T Consensus 1 M~~l~~QKRLAA~vL~cG~~rVw~DP~~~~eI~~A~sR~~IR~LIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (149)
T 1vq8_P 1 MTDLSAQKRLAADVLDVGKNRVWFNPERQGDIADAITREDVRELVDEGAIQAKDKKGNSRGRARERQKKRAYGHQKGAGS 80 (149)
T ss_dssp -CCCHHHHHHHHHHTTSCGGGEEECGGGHHHHHHCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSGGG
T ss_pred CcchHHHHHHHHHHHCCCcCceecCHHHHHHHHhcccHHHHHHHHHCCCeEeccccCccHHHHHHHHHHHHhCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHH
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEK 149 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~ 149 (185)
|+||+|||+|+|+.||++||+||++|++|||+|+||+|+||.||++||||+|+|+++|++|||+.++|+
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~Re~~kID~~~Yr~lY~kaKGn~Fknk~~L~~~I~~~~~~~ 149 (149)
T 1vq8_P 81 RKGKAGARQNSKEDWESRIRAQRTKLRELRDEGTLSSSQYRDLYDKAGGGEFDSVADLERYIDANHGDA 149 (149)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHTTTCCSSHHHHHHHHTC-----
T ss_pred CcCcccccCcHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCCHHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874
No 7
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.4e-76 Score=476.03 Aligned_cols=147 Identities=42% Similarity=0.806 Sum_probs=145.3
Q ss_pred CCchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCC
Q 029944 1 MVSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGK 80 (185)
Q Consensus 1 M~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~Gk 80 (185)
|++|++||||||+||+||+++|||||||++||++||||||||+||+||+|+++|++|||||||+++++++++|||+|+|+
T Consensus 1 m~~l~~QKRLAa~vL~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGR~~G~Gk 80 (150)
T 3j21_Q 1 MNTLKMQRRIAAEILKCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKKKPIKGQSRYRAKIRHEQKKKGRHRGPGS 80 (150)
T ss_dssp CCCCHHHHHHHHHHHTSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEECCCCCCCCHHHHHHHHHHHTTCSCSTTT
T ss_pred CcchHHHHHHHHHHHcCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEecCCcCcCHHHHHHHHHHHHhcccCCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhh
Q 029944 81 RKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKA 147 (185)
Q Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~ 147 (185)
|+||+|||+|+|++||++||+||++|++|||+|+||+|+||+||++||||+|+|+++|++||++...
T Consensus 81 RkGt~~AR~p~K~~Wm~riR~lRrlLr~~re~~kID~~~Y~~LY~kaKGn~Fknk~~L~e~i~~~~~ 147 (150)
T 3j21_Q 81 RKGKKTARMGKKELWIKTIRALRKELRKLKAQKKIDRKTYRMLYIRAKGGQFKNKHQLYLFLEEHGL 147 (150)
T ss_dssp CCSCHHHHSCHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCSCHHHHHHHHHHHST
T ss_pred ccCcccccCChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhcCCCcCcHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998754
No 8
>3jyw_P 60S ribosomal protein L19; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=6.4e-72 Score=460.93 Aligned_cols=157 Identities=57% Similarity=0.953 Sum_probs=153.0
Q ss_pred CchhhhHHHHHHHhccCCCceecCccchhHHHhhhhhHHHHhhhhcCceeecCCCCCChhHHHHHHHHHhcCcCCCCCCc
Q 029944 2 VSLKLQKRLSASVLKCGRGKVWLDPNEVNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKR 81 (185)
Q Consensus 2 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~SR~R~r~~~~~r~kGR~~G~GkR 81 (185)
++|++||||||+||+||++||||||||++||++||||||||+||+||+|+++|++||||+||+++++++++|||+|+|+|
T Consensus 1 ~~l~~QKRLAa~vL~cG~~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~~Sr~R~r~~~~~r~kGr~~G~GkR 80 (176)
T 3jyw_P 1 ANLRTQKRLAASVVGVGKRKVWLDPNETSEIAQANSRNAIRKLVKNGTIVKKAVTVHSKSRTRAHAQSKREGRHSGYGKR 80 (176)
T ss_dssp CCCHHHHHHHHHHHTCCTTTEECCSSCCHHHHHCCSHHHHHHHHHHTCSEECCCCCCCSHHHHHHHHHHTTTSSCSSSSC
T ss_pred CCcHHHHHHHHHHhCCCCCccccChHHHHHHHhhccHHHHHHHHHCCCEEeCCCcCCChHHHHHHHHHHhcCCCCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCcchHHHHHHHHHHHHHHHHHHhcCCCChHhhHHHHhhhcCCccccHHHHHHHHHHhhhHHHHhhhhhHH
Q 029944 82 KGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQ 158 (185)
Q Consensus 82 kGt~~AR~p~K~~Wm~riR~lRr~Lk~~re~~kID~~~Yr~lY~kaKGn~Fknk~~L~e~i~~~k~e~~r~k~l~dQ 158 (185)
+||+|||||+|++||++||+||++|++|||+|+||+|+||.||+++|||+|+|+++|++||++.++|+++....+.-
T Consensus 81 kGt~~AR~p~K~~Wm~riR~lRrlLr~yRe~gkIDk~lYr~LY~kaKGn~Fknk~~L~e~I~k~ka~~~~~~~~~~~ 157 (176)
T 3jyw_P 81 KGTREARLPSQVVWIRRLRVLRRLLAKYRDAGKIDKHLYHVLYKESKGNAFKHKRALVEHIAAAAAAAAAAAAAAAA 157 (176)
T ss_dssp SSCTTCSSCHHHHHHHHHHHHHHHHSTTTTTTSSCSTTTTTTGGGTTTTCCCSTTHHHHCTTTTGGGGHHHHHHGGG
T ss_pred cccccccCChHHHHHHHHHHHHHHHHHHhhCCCCCchhhHHHHHHhcCCEechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988665543
No 9
>1fme_A FSD-EY peptide; beta-BETA-alpha, zinc finger, designed protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1fsd_A 1fsv_A 2k6r_A* 1psv_A
Probab=68.45 E-value=1.7 Score=25.47 Aligned_cols=21 Identities=43% Similarity=0.602 Sum_probs=18.7
Q ss_pred hhcCCccccHHHHHHHHHHhh
Q 029944 126 KVKGNVFKNKRVLMESIHKSK 146 (185)
Q Consensus 126 kaKGn~Fknk~~L~e~i~~~k 146 (185)
+-||-+|+|...|.++|++-+
T Consensus 6 kykgrtfrnekelrdfiekfk 26 (28)
T 1fme_A 6 KYKGRTFRNEKELRDFIEKFK 26 (28)
T ss_dssp ESSSCEECCHHHHHHHHHHCC
T ss_pred hhcccccccHHHHHHHHHHhc
Confidence 568999999999999998865
No 10
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=23.87 E-value=30 Score=16.89 Aligned_cols=17 Identities=12% Similarity=0.172 Sum_probs=14.1
Q ss_pred CCccccHHHHHHHHHHh
Q 029944 129 GNVFKNKRVLMESIHKS 145 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~~~ 145 (185)
|..|.+...|..|+...
T Consensus 9 ~~~f~~~~~l~~H~~~h 25 (29)
T 1ard_A 9 TRAFARQEHLKRHYRSH 25 (29)
T ss_dssp CCBCSSHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHh
Confidence 67899999999997543
No 11
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=23.70 E-value=40 Score=26.21 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=29.0
Q ss_pred CccchhHHHhhhhhHHHHhhhhcCceeecCCCC
Q 029944 25 DPNEVNEISMANSRQNIRKLVKDGFIIRKPTKI 57 (185)
Q Consensus 25 DP~e~~eIa~A~sR~~IRkLIkdG~I~~kp~~~ 57 (185)
-|+....++-..-|+-+..|..+|+|...|..|
T Consensus 86 ~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G 118 (150)
T 2v7f_A 86 APERFYKAGGSIIRKALQQLEAAGFVEKVPGKG 118 (150)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTE
T ss_pred CCccccccchHHHHHHHHHHHHCCCEEEeCCCc
Confidence 488989999999999999999999999887543
No 12
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.06 E-value=33 Score=16.66 Aligned_cols=17 Identities=18% Similarity=0.282 Sum_probs=13.8
Q ss_pred CCccccHHHHHHHHHHh
Q 029944 129 GNVFKNKRVLMESIHKS 145 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~~~ 145 (185)
|..|.+...|..|+...
T Consensus 9 ~k~f~~~~~l~~H~~~H 25 (29)
T 2m0f_A 9 GKQFTTSGNLKRHLRIH 25 (29)
T ss_dssp SCEESCHHHHHHHHHHH
T ss_pred CCccCChhHHHHHHHHh
Confidence 67899999999997543
No 13
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=22.69 E-value=36 Score=18.37 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=14.7
Q ss_pred cCCccccHHHHHHHHHHh
Q 029944 128 KGNVFKNKRVLMESIHKS 145 (185)
Q Consensus 128 KGn~Fknk~~L~e~i~~~ 145 (185)
=|..|.+.+.|..|+...
T Consensus 16 C~k~f~~~~~L~~H~~~H 33 (37)
T 1va1_A 16 CGKVYGKTSHLRAHLRWH 33 (37)
T ss_dssp CCCEESCHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHhc
Confidence 378999999999997544
No 14
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=21.99 E-value=37 Score=16.55 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=12.7
Q ss_pred CCccccHHHHHHHHH
Q 029944 129 GNVFKNKRVLMESIH 143 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~ 143 (185)
|..|.+.+.|..|+.
T Consensus 11 ~k~f~~~~~l~~H~~ 25 (29)
T 2ab3_A 11 GRSFNDRRKLNRHKK 25 (29)
T ss_dssp CEEESSHHHHHHHHG
T ss_pred cCccCCHHHHHHHHH
Confidence 678999999999864
No 15
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=21.68 E-value=56 Score=16.46 Aligned_cols=16 Identities=19% Similarity=0.262 Sum_probs=13.6
Q ss_pred CCccccHHHHHHHHHH
Q 029944 129 GNVFKNKRVLMESIHK 144 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~~ 144 (185)
|-.|.+...|..|+..
T Consensus 11 ~k~f~~~~~L~~H~~~ 26 (31)
T 1sp2_A 11 GKRFTRSDELQRHKRT 26 (31)
T ss_dssp CCBCSSHHHHHHHHTT
T ss_pred CcccCCHhHHHHHHHH
Confidence 7789999999999754
No 16
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=21.53 E-value=49 Score=23.39 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCCChHhhHH
Q 029944 101 VLRRLLRKYRESKKIDKHMYHD 122 (185)
Q Consensus 101 ~lRr~Lk~~re~~kID~~~Yr~ 122 (185)
.+--.|+.|.++|.||+++|-.
T Consensus 30 lM~~El~~Ly~~~lId~~~y~~ 51 (72)
T 2nn4_A 30 FMLDELKELYMNHMIEKEQWAR 51 (72)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHH
Confidence 4556899999999999998754
No 17
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=21.17 E-value=53 Score=15.90 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCccccHHHHHHHHHH
Q 029944 129 GNVFKNKRVLMESIHK 144 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~~ 144 (185)
|..|.+...|..|+..
T Consensus 10 ~~~f~~~~~l~~H~~~ 25 (30)
T 2m0d_A 10 GRSFSDPTSKMRHLET 25 (30)
T ss_dssp CCEESCHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHH
Confidence 6789999999999754
No 18
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=20.34 E-value=69 Score=16.74 Aligned_cols=19 Identities=16% Similarity=0.106 Sum_probs=15.3
Q ss_pred CCccccHHHHHHHHHHhhh
Q 029944 129 GNVFKNKRVLMESIHKSKA 147 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~~~k~ 147 (185)
|-.|.+...|..|+...-.
T Consensus 9 ~k~F~~~~~L~~H~~~H~~ 27 (33)
T 1rim_A 9 PKRFMRSDHLSKHITLHEL 27 (33)
T ss_dssp CCCCSSHHHHHHHHHHHTT
T ss_pred CchhCCHHHHHHHHHHhCC
Confidence 6789999999999865443
No 19
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.17 E-value=53 Score=15.96 Aligned_cols=15 Identities=0% Similarity=0.056 Sum_probs=12.7
Q ss_pred CCccccHHHHHHHHH
Q 029944 129 GNVFKNKRVLMESIH 143 (185)
Q Consensus 129 Gn~Fknk~~L~e~i~ 143 (185)
|-.|.+...|..|+.
T Consensus 10 ~k~f~~~~~l~~H~~ 24 (27)
T 2kvh_A 10 PQRSRDFSAMTKHLR 24 (27)
T ss_dssp SCEESSHHHHHHHHH
T ss_pred ChhhCCHHHHHHHHH
Confidence 678999999999864
Done!