BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029946
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/146 (30%), Positives = 68/146 (46%), Gaps = 24/146 (16%)
Query: 41 IPAQVIGSITGVRFI-LDTFPQI--GRGPSL---NVGIHHGALTEGLLTFAIV-TISLGL 93
I AQ +G+I G + L T P + G G ++ N+ HG L E ++TF +V TI
Sbjct: 88 IAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASC 147
Query: 94 ARKIPGSFYMKTWISSVSKLAL-------HILGSDMTGGCMNPASVMGWAYARGDHITKE 146
K +T ++ LA+ H+ + TG MNPA G A G+ E
Sbjct: 148 DSK-------RTDVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW---E 197
Query: 147 HILVYWLAPIQATVIALWLFKLVVRP 172
+ +YW+ PI V+A L++ V P
Sbjct: 198 NHWIYWVGPIIGAVLAGGLYEYVFCP 223
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 41 IPAQVIGSITGVRFI-LDTFPQIGRGPSL-----NVGIHHGALTEGLLTFAIV-TISLGL 93
I AQ +G+I G + L T P + G + N+ HG L E ++TF +V TI
Sbjct: 97 ITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC 156
Query: 94 ARKIPGSFYMKTWISSVSKLAL-------HILGSDMTGGCMNPASVMGWAYARGDHITKE 146
K +T ++ LA+ H+ + TG MNPA G A G+ E
Sbjct: 157 DDK-------RTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW---E 206
Query: 147 HILVYWLAPIQATVIALWLFKLVVRP 172
+ +YW+ PI V+A L++ V P
Sbjct: 207 NHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 41 IPAQVIGSITGVRFI-LDTFPQIGRGPSL-----NVGIHHGALTEGLLTFAIV-TISLGL 93
I AQ +G+I G + L T P + G + N+ HG L E ++TF +V TI
Sbjct: 97 ITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC 156
Query: 94 ARKIPGSFYMKTWISSVSKLAL-------HILGSDMTGGCMNPASVMGWAYARGDHITKE 146
K +T ++ LA+ H+ + TG MNPA G A G+ E
Sbjct: 157 DSK-------RTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW---E 206
Query: 147 HILVYWLAPIQATVIALWLFKLVVRP 172
+ +YW+ PI V+A L++ V P
Sbjct: 207 NHWIYWVGPIIGAVLAGALYEYVFCP 232
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 66/146 (45%), Gaps = 24/146 (16%)
Query: 41 IPAQVIGSITGVRFI-LDTFPQIGRGPSL-----NVGIHHGALTEGLLTFAIV-TISLGL 93
I AQ +G+I G + L T P + G + N+ HG L E ++TF +V TI
Sbjct: 136 ITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASC 195
Query: 94 ARKIPGSFYMKTWISSVSKLAL-------HILGSDMTGGCMNPASVMGWAYARGDHITKE 146
K +T ++ LA+ H+ + TG MNPA G A G+ E
Sbjct: 196 DDK-------RTDVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNW---E 245
Query: 147 HILVYWLAPIQATVIALWLFKLVVRP 172
+ +YW+ PI V+A L++ V P
Sbjct: 246 NHWIYWVGPIIGAVLAGALYEYVFCP 271
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 59 FPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLA--RKIPGSFYMKTWISSVSKLALH 116
FP IG G ++ LTE + TF ++ + +G+A + P F +V +
Sbjct: 139 FPGIGYGQAI--------LTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVGGIITT 190
Query: 117 ILGSDMTGGCMNPASVMGWAYARGDHITK----EHILVYWLAPIQATVIALWLFKLVVR 171
I ++TG +NPA G Y GD + ++ +Y + PI V A WL+ + +
Sbjct: 191 I--GNITGSSLNPARTFG-PY-LGDSLMGINLWQYFPIYVIGPIVGAVAAAWLYNYLAK 245
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 74/175 (42%), Gaps = 16/175 (9%)
Query: 7 LGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGP 66
LG V+ GG NP LA + S L + AQ++G+I G + P RG
Sbjct: 61 LGPVS-GGHINPAITLALLVGNQIS--LLRAFFYVAAQLVGAIAGAGILYGVAPLNARG- 116
Query: 67 SLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLAL---------HI 117
+L V + T+G + ++ LA I S + S V AL H+
Sbjct: 117 NLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRR-TSPVGSPALSIGLSVTLGHL 175
Query: 118 LGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172
+G TG MNPA G A + + H V+W+ PI V+A L+ ++ P
Sbjct: 176 VGIYFTGCSMNPARSFGPAVVM-NRFSPAH-WVFWVGPIVGAVLAAILYFYLLFP 228
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 116 HILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172
H+L D TG +NPA G + H ++H ++W+ P +A+ ++ ++ P
Sbjct: 182 HLLAIDYTGCGINPARSFGSSVIT--HNFQDH-WIFWVGPFIGAALAVLIYDFILAP 235
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 116 HILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172
H+L D TG +NPA G A H H ++W+ P +A+ ++ ++ P
Sbjct: 180 HLLAIDYTGCGINPARSFGSAVIT--HNFSNH-WIFWVGPFIGGALAVLIYDFILAP 233
>pdb|3JPZ|A Chain A, Crystal Structure Of Lombricine Kinase
pdb|3JPZ|B Chain B, Crystal Structure Of Lombricine Kinase
pdb|3JQ3|A Chain A, Crystal Structure Of Lombricine Kinase, Complexed With
Substrate Adp
Length = 366
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 86 IVTISLGLARKIPGSFYMKTWISSVSK---LALHILGSDMTGGCM-NPASVMGWAYARGD 141
I T GL+ + G++Y + ++ + +A H L TG M N ASV W ARG
Sbjct: 145 ITTALAGLSGDLSGTYYPLSKMTPEQENQLIADHFLFQKPTGHLMVNSASVRDWPDARGI 204
Query: 142 HITKEHILVYWL 153
E + W+
Sbjct: 205 WHNNEKTFLIWI 216
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 46/107 (42%), Gaps = 6/107 (5%)
Query: 62 IGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSD 121
+G G S G+ A +L ++ +++ R + ++ ++ L H++
Sbjct: 162 LGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHRAT----WFAPFVIGIALLIAHLICIY 217
Query: 122 MTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKL 168
TG +NPA G A A + +YWL PI +A ++++
Sbjct: 218 YTGAGLNPARSFGPAVAARSF--PNYHWIYWLGPILGAFLAYSIWQM 262
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,303,065
Number of Sequences: 62578
Number of extensions: 205793
Number of successful extensions: 782
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 22
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)