Query 029946
Match_columns 185
No_of_seqs 174 out of 1443
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:07:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 4.5E-46 9.7E-51 298.3 12.2 168 2-176 57-231 (238)
2 PLN00184 aquaporin NIP1; Provi 100.0 1.1E-42 2.5E-47 287.6 14.8 173 3-181 101-283 (296)
3 PLN00026 aquaporin NIP; Provi 100.0 4.6E-41 1E-45 277.6 13.5 167 3-175 118-286 (298)
4 PLN00182 putative aquaporin NI 100.0 3.8E-40 8.3E-45 271.0 15.6 163 3-171 89-254 (283)
5 PRK05420 aquaporin Z; Provisio 100.0 7.8E-40 1.7E-44 263.2 16.8 165 4-173 51-230 (231)
6 PF00230 MIP: Major intrinsic 100.0 6.5E-40 1.4E-44 263.1 13.8 158 3-166 61-227 (227)
7 COG0580 GlpF Glycerol uptake f 100.0 1.6E-39 3.5E-44 259.9 15.5 165 3-171 55-240 (241)
8 PLN00027 aquaporin TIP; Provis 100.0 2.2E-39 4.8E-44 263.6 15.9 165 4-174 73-242 (252)
9 PLN00166 aquaporin TIP2; Provi 100.0 2.5E-39 5.5E-44 262.7 15.8 166 3-174 70-240 (250)
10 PLN00167 aquaporin TIP5; Provi 100.0 1.9E-39 4E-44 264.2 14.4 174 3-182 74-251 (256)
11 PTZ00016 aquaglyceroporin; Pro 100.0 1.9E-39 4.2E-44 268.8 14.4 168 4-174 98-293 (294)
12 PLN00183 putative aquaporin NI 100.0 4.7E-38 1E-42 257.7 14.0 166 4-175 93-260 (274)
13 KOG0224 Aquaporin (major intri 100.0 1.8E-38 3.8E-43 257.3 7.2 170 2-174 79-278 (316)
14 cd00333 MIP Major intrinsic pr 100.0 8.1E-37 1.7E-41 245.6 15.6 163 4-169 49-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.2E-36 7E-41 240.3 13.7 160 3-166 48-216 (216)
16 PLN00026 aquaporin NIP; Provi 99.7 1.2E-17 2.6E-22 138.5 11.1 106 66-173 64-174 (298)
17 PLN00184 aquaporin NIP1; Provi 99.7 2.7E-17 5.8E-22 136.5 11.4 103 69-173 50-157 (296)
18 PLN00166 aquaporin TIP2; Provi 99.7 3.3E-16 7.2E-21 127.4 10.7 101 70-172 15-125 (250)
19 PLN00183 putative aquaporin NI 99.7 4E-16 8.6E-21 128.3 10.9 103 69-173 41-148 (274)
20 PLN00167 aquaporin TIP5; Provi 99.7 1E-15 2.2E-20 124.9 11.2 102 69-172 18-129 (256)
21 PTZ00016 aquaglyceroporin; Pro 99.6 1.2E-15 2.6E-20 126.8 10.5 103 71-175 48-155 (294)
22 PLN00182 putative aquaporin NI 99.6 1.5E-15 3.3E-20 125.3 11.0 101 70-172 39-144 (283)
23 cd00333 MIP Major intrinsic pr 99.6 1.2E-15 2.6E-20 122.7 9.3 100 75-176 2-107 (228)
24 PRK05420 aquaporin Z; Provisio 99.6 4.3E-15 9.3E-20 119.7 11.1 98 73-172 2-105 (231)
25 PLN00027 aquaporin TIP; Provis 99.6 3.9E-15 8.4E-20 121.4 11.0 100 71-172 18-127 (252)
26 COG0580 GlpF Glycerol uptake f 99.6 1.5E-14 3.3E-19 116.2 9.6 106 71-178 3-116 (241)
27 TIGR00861 MIP MIP family chann 99.5 3.4E-14 7.3E-19 113.4 9.4 95 78-174 1-105 (216)
28 KOG0224 Aquaporin (major intri 99.5 2.8E-14 6.1E-19 116.6 7.6 103 71-175 30-138 (316)
29 KOG0223 Aquaporin (major intri 99.5 1.3E-13 2.8E-18 111.0 9.9 103 69-173 7-114 (238)
30 PF00230 MIP: Major intrinsic 99.4 7.6E-13 1.7E-17 106.1 7.9 102 70-173 5-117 (227)
31 PF04632 FUSC: Fusaric acid re 85.0 31 0.00067 31.6 14.6 115 28-174 380-494 (650)
32 PRK11562 nitrite transporter N 77.0 41 0.00088 27.8 14.9 152 20-179 86-258 (268)
33 PRK15086 ethanolamine utilizat 64.6 9.8 0.00021 32.8 3.9 59 123-181 303-367 (372)
34 PF03033 Glyco_transf_28: Glyc 57.1 4.4 9.6E-05 28.9 0.5 17 13-29 9-25 (139)
35 PRK11427 multidrug efflux syst 50.5 2.3E+02 0.0049 26.9 13.5 112 33-174 394-505 (683)
36 PRK12446 undecaprenyldiphospho 49.8 11 0.00023 32.2 1.8 25 3-28 3-27 (352)
37 COG2116 FocA Formate/nitrite f 42.9 1.9E+02 0.0042 23.9 14.4 147 23-176 95-263 (265)
38 PF14034 Spore_YtrH: Sporulati 40.1 42 0.00091 23.6 3.2 49 124-172 53-101 (102)
39 PRK10631 p-hydroxybenzoic acid 38.9 3.4E+02 0.0073 25.6 13.6 124 14-172 381-504 (652)
40 KOG1330 Sugar transporter/spin 36.4 23 0.00049 31.9 1.8 33 147-179 187-219 (493)
41 PRK14213 camphor resistance pr 35.0 85 0.0019 22.5 4.3 27 33-59 91-117 (118)
42 TIGR02762 TraL_TIGR type IV co 33.0 19 0.00041 24.8 0.6 21 136-156 58-78 (95)
43 PRK04125 murein hydrolase regu 32.8 34 0.00073 25.6 1.9 32 152-183 99-130 (141)
44 COG3192 EutH Ethanolamine util 32.2 46 0.00099 28.2 2.8 52 123-174 320-377 (389)
45 PRK10478 putative PTS system f 30.8 57 0.0012 28.2 3.3 28 147-174 312-339 (359)
46 PF09163 Form-deh_trans: Forma 30.0 62 0.0013 19.1 2.4 24 155-178 19-42 (44)
47 PF14990 DUF4516: Domain of un 29.6 87 0.0019 18.8 3.0 42 144-185 6-47 (47)
48 PRK11404 putative PTS system 29.3 44 0.00096 30.0 2.4 35 147-181 440-474 (482)
49 TIGR02587 putative integral me 27.8 3.3E+02 0.0072 22.6 7.0 65 21-85 84-153 (271)
50 KOG4050 Glutamate transporter 27.3 1.8E+02 0.0039 22.4 5.0 81 98-184 74-165 (188)
51 PF10710 DUF2512: Protein of u 27.3 2.6E+02 0.0056 20.6 10.2 62 73-137 4-70 (136)
52 PRK10290 superoxide dismutase; 27.2 25 0.00053 27.2 0.4 9 11-19 88-96 (173)
53 PF03092 BT1: BT1 family; Int 26.0 2.8E+02 0.006 24.2 6.8 25 70-94 320-344 (433)
54 KOG2533 Permease of the major 25.4 75 0.0016 28.6 3.2 58 33-92 168-225 (495)
55 KOG0441 Cu2+/Zn2+ superoxide d 25.0 30 0.00064 26.2 0.5 10 10-19 59-68 (154)
56 PF00939 Na_sulph_symp: Sodium 23.1 1.2E+02 0.0026 26.8 4.0 68 106-174 175-244 (471)
57 COG1289 Predicted membrane pro 23.1 6.2E+02 0.013 23.6 15.1 123 18-173 383-506 (674)
58 PF01384 PHO4: Phosphate trans 22.8 4.7E+02 0.01 22.1 13.8 138 19-174 7-149 (326)
59 PF03918 CcmH: Cytochrome C bi 22.8 28 0.00061 26.1 0.0 29 147-175 100-128 (148)
60 PRK14220 camphor resistance pr 22.8 1.8E+02 0.0039 20.9 4.2 26 33-58 91-116 (120)
61 PRK14759 potassium-transportin 22.3 1.4E+02 0.0031 16.0 3.0 25 149-173 3-27 (29)
62 PF14034 Spore_YtrH: Sporulati 22.0 2.9E+02 0.0063 19.4 5.8 48 13-61 53-101 (102)
63 PF07172 GRP: Glycine rich pro 21.5 1E+02 0.0023 21.2 2.7 11 156-166 8-18 (95)
64 PF14241 DUF4341: Domain of un 21.3 1.3E+02 0.0028 18.9 2.9 54 103-161 7-60 (62)
65 PRK14205 camphor resistance pr 21.0 2E+02 0.0043 20.5 4.2 25 33-57 90-114 (118)
66 PLN02642 copper, zinc superoxi 20.9 40 0.00086 25.8 0.5 10 10-19 63-72 (164)
67 PF03739 YjgP_YjgQ: Predicted 20.4 5E+02 0.011 21.5 9.4 78 77-167 276-353 (354)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-46 Score=298.27 Aligned_cols=168 Identities=26% Similarity=0.393 Sum_probs=153.0
Q ss_pred EEEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CCCCCCCcchHH
Q 029946 2 FLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI-------GRGPSLNVGIHH 74 (185)
Q Consensus 2 ~~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-------~~~~~~~~s~~~ 74 (185)
..|+++|+|| |||+|||||+++++.|++ ++.+++.|+.+|++|+++|+++++.+.|.+ ...+.++.+..|
T Consensus 57 v~i~~~g~iS-GaH~NPAVT~a~~~~~~i--sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~q 133 (238)
T KOG0223|consen 57 VLVYSTGHIS-GAHFNPAVTLAFAVGGKI--SLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRKGLGLTGLAPGLSTGQ 133 (238)
T ss_pred HHHhhhcccc-ccccCHHHHHHHHHhCCC--cHHHhHHHHHHHHHHHHHHHHHHheecCcccccCCcceeccCCCCCcch
Confidence 4678999999 999999999999999999 999999999999999999999999999873 235667889999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhh
Q 029946 75 GALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLA 154 (185)
Q Consensus 75 ~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~ 154 (185)
+++.|++.||.|++++++...|. ++..+.|+.+|+++.+.+++.+++||++|||||+|||++..+ .|+++|+||+|
T Consensus 134 ~~~~E~ilTf~Lv~~v~~~a~d~-~~~~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~---~w~~hwiYwvg 209 (238)
T KOG0223|consen 134 GLVIEIILTFILVFTVFATATDP-RRSELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYG---SWDDHWIYWVG 209 (238)
T ss_pred hHHHHHHHHHHHhheeEEEeecC-CCcccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhc---CCCcEEEEEhh
Confidence 99999999999999999955433 333789999999999999999999999999999999999987 69999999999
Q ss_pred hHHHHHHHHHHHHHhcCCchhh
Q 029946 155 PIQATVIALWLFKLVVRPLAEE 176 (185)
Q Consensus 155 p~~Ga~~a~~~~~~~~~~~~~~ 176 (185)
|++|+++++++|+.++.++.+|
T Consensus 210 P~~Ga~~a~~~y~~v~~~~~~~ 231 (238)
T KOG0223|consen 210 PLLGAILAALIYRLVFIPDESE 231 (238)
T ss_pred HHHHHHHHHHHHHHhccCcccc
Confidence 9999999999999999998333
No 2
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=1.1e-42 Score=287.58 Aligned_cols=173 Identities=23% Similarity=0.256 Sum_probs=148.3
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----------CCCCCCcch
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG----------RGPSLNVGI 72 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~----------~~~~~~~s~ 72 (185)
.++++|+|| |||+|||||++.++.|++ +|++.+.|+++|++|+++|+.+++.+++... ....+..+.
T Consensus 101 ~i~~~g~iS-GaH~NPAVTla~al~g~~--~~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~ 177 (296)
T PLN00184 101 LIYSLGHIS-GAHINPAVTIAFASCGRF--PLKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSD 177 (296)
T ss_pred HHHHhcCCC-ccccCHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcH
Confidence 456789999 999999999999999999 9999999999999999999999999885321 011223478
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHh
Q 029946 73 HHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYW 152 (185)
Q Consensus 73 ~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~ 152 (185)
.++++.|+++||+|+++++++.+++.+.....|+.+|+++.++.++.+++||++|||||||+|+++.+ .|+++|+||
T Consensus 178 ~~af~~E~i~TfvLv~~il~~~~~~~~~~~~~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~---~~~~~WVy~ 254 (296)
T PLN00184 178 LQAFVMEFIVTFYLMFIISGVATDNRAIGELAGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYG---CYKGIWIYI 254 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHheeccCcCCCcchHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhh---cccccchHH
Confidence 99999999999999999998866433333477999999999999999999999999999999999876 688999999
Q ss_pred hhhHHHHHHHHHHHHHhcCCchhhhcccc
Q 029946 153 LAPIQATVIALWLFKLVVRPLAEEKKDSK 181 (185)
Q Consensus 153 v~p~~Ga~~a~~~~~~~~~~~~~~~~~~k 181 (185)
+||++|+++++++|++++.++...++..|
T Consensus 255 vgPilGa~laal~y~~l~~~~~~~~~~~~ 283 (296)
T PLN00184 255 VAPTLGAIAGAWVYNTVRYTDKPLREITK 283 (296)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcchhhcc
Confidence 99999999999999999876655444443
No 3
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=4.6e-41 Score=277.63 Aligned_cols=167 Identities=21% Similarity=0.214 Sum_probs=144.9
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCCcchHHHHHHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG--RGPSLNVGIHHGALTEG 80 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~~~~s~~~~~~~E~ 80 (185)
.++++|+|| |||+|||||++.++.|++ +|++.+.|+++|++|+++|+.+++.++++.. +...++.+..++++.|+
T Consensus 118 ~i~~~g~IS-GaHlNPAVTla~al~g~~--~~~~~~~YiiaQilGAi~aa~~~~~~~~~~~~~g~t~p~~s~~~a~~~Ef 194 (298)
T PLN00026 118 VILSTGHIS-GAHLNPSLTIAFAALRHF--PWKHVPAYIAAQVSASICASFALKGVFHPFMSGGVTVPSVSTGQAFALEF 194 (298)
T ss_pred HHHHhhccC-ccccCHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCceeeecccHHHHHHHHH
Confidence 456789999 999999999999999999 9999999999999999999999999986531 11223568899999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHH
Q 029946 81 LLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATV 160 (185)
Q Consensus 81 ~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~ 160 (185)
++|++|+++++++.++++......++.+|+++++.+++.+++||+++||||||+|+++.+ +|.++|+||++|++|++
T Consensus 195 i~TfiLv~vi~~v~~~~~~~~~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~---~~~~~wVy~vaPilGAi 271 (298)
T PLN00026 195 IITFNLLFVVTAVATDTRAVGELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG---NYRAIWIYLVAPTLGAL 271 (298)
T ss_pred HHHHHHHHhheeeecCCCCcCCccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC---CchheeHHHHHHHHHHH
Confidence 999999999997754332223356899999999999999999999999999999999865 79999999999999999
Q ss_pred HHHHHHHHhcCCchh
Q 029946 161 IALWLFKLVVRPLAE 175 (185)
Q Consensus 161 ~a~~~~~~~~~~~~~ 175 (185)
+++++|+.+..++.+
T Consensus 272 lga~ly~~~~~~~~~ 286 (298)
T PLN00026 272 AGAGTYTAVKLREED 286 (298)
T ss_pred HHHHHHHHHhCcccc
Confidence 999999998655544
No 4
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=3.8e-40 Score=271.03 Aligned_cols=163 Identities=19% Similarity=0.265 Sum_probs=142.6
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCCCCcchHHHHHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI---GRGPSLNVGIHHGALTE 79 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~---~~~~~~~~s~~~~~~~E 79 (185)
.+++++++| |||+|||||++.++.|++ +|.+.+.|+++|++|+++|+++++.+++.. .....++.+..++++.|
T Consensus 89 ~i~~~g~iS-Gah~NPAVTla~~~~~~~--~~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~p~~s~~~a~~~E 165 (283)
T PLN00182 89 MIYSTGHIS-GAHFNPAVTVTFAIFRRF--PWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGTTPTDSSGQALVAE 165 (283)
T ss_pred HHHHhcCCC-ccccCHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeCCCCcchHHHHHHH
Confidence 356789999 999999999999999999 999999999999999999999999988542 12223345788999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHH
Q 029946 80 GLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQAT 159 (185)
Q Consensus 80 ~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga 159 (185)
+++|++|+++++...+++.......++.+|+++++..++.+++||+++||||+|+|+++.+ .|.++|+||++|++|+
T Consensus 166 ~l~TfiLv~~i~~~~~~~~~~~~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~---~~~~~wvY~vap~lGA 242 (283)
T PLN00182 166 IIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG---RYKGIWVYIVGPFVGI 242 (283)
T ss_pred HHHHHHHHHHHHhheeccccCCcchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc---cccceeHHHHHHHHHH
Confidence 9999999999998765332233457899999999999999999999999999999999876 6889999999999999
Q ss_pred HHHHHHHHHhcC
Q 029946 160 VIALWLFKLVVR 171 (185)
Q Consensus 160 ~~a~~~~~~~~~ 171 (185)
++++++|++++.
T Consensus 243 ~lgally~~l~~ 254 (283)
T PLN00182 243 IAGGFVYNLIRF 254 (283)
T ss_pred HHHHHHHHHHhc
Confidence 999999999984
No 5
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=7.8e-40 Score=263.18 Aligned_cols=165 Identities=21% Similarity=0.293 Sum_probs=142.6
Q ss_pred EeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------C-C------CCC
Q 029946 4 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG--------R-G------PSL 68 (185)
Q Consensus 4 i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--------~-~------~~~ 68 (185)
+++++++| |+|+|||||++.++.|++ +|++.+.|+++|++|+++|+.+++.++++.. . . ...
T Consensus 51 i~~~g~iS-G~h~NPAvtl~~~~~~~i--~~~~~~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (231)
T PRK05420 51 AYAVGHIS-GGHFNPAVSVGLWAGGRF--PAKELVPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPG 127 (231)
T ss_pred HHHHhCcc-cccCCHHHHHHHHHhCCC--CHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCC
Confidence 56789999 999999999999999999 9999999999999999999999998875420 0 0 012
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccc
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHI 148 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~ 148 (185)
..+..++++.|+++|++|+++++...++++ .....|+.+|+.+..+.++.+++||+++||||||+|+++.+ +..|+++
T Consensus 128 ~~~~~~~~~~E~v~T~iLv~~i~~~~~~~~-~~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g-~~~~~~~ 205 (231)
T PRK05420 128 GYSLLAALVCEVVLTAFFLLVILGATDKRA-PAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVG-GWALEQL 205 (231)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhC-CCCccce
Confidence 346789999999999999999999887543 23467999999999999999999999999999999999986 2345689
Q ss_pred hhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 149 LVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 149 ~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
|+||++|++|+++++++|+++++++
T Consensus 206 wvy~vgP~~Ga~laa~~y~~l~~~~ 230 (231)
T PRK05420 206 WLFWVAPIVGAIIGGLIYRLLLEKD 230 (231)
T ss_pred EEeehHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999987654
No 6
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=6.5e-40 Score=263.07 Aligned_cols=158 Identities=24% Similarity=0.384 Sum_probs=140.6
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----C--CCCCCCcchHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI-----G--RGPSLNVGIHHG 75 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~-----~--~~~~~~~s~~~~ 75 (185)
.+++++++| |||+|||||++.++.|++ ++++++.|+++|++|+++|+.+++.++++. . ..+.++.+..++
T Consensus 61 ~i~~~~~iS-GaH~NPaVTla~~l~g~~--~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 137 (227)
T PF00230_consen 61 LIYAFGPIS-GAHFNPAVTLAFALTGRI--SWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAAGIFATTPPPGISLGQA 137 (227)
T ss_dssp HHHHHHHHH-TSS-SHHHHHHHHHTTSS--SHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCTTTTSCGSTTTSSHHHH
T ss_pred hhhhhhhcc-ccccccchhhheeeeeee--cccceeeEEeeccccccccccchhhcccCcccccccccccccccchhhhh
Confidence 356789999 999999999999999999 999999999999999999999999999872 1 246677899999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCC--cchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhh
Q 029946 76 ALTEGLLTFAIVTISLGLARKIPGS--FYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWL 153 (185)
Q Consensus 76 ~~~E~~~Tf~lv~~i~~~~~~~~~~--~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v 153 (185)
++.|+++|++|+++++...+++.+. ..+.|+.+|+++.+..+..++.||+++||||+++|+++.+ .|+++|+||+
T Consensus 138 ~~~E~~~t~il~~~i~~~~~~~~~~~~~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~---~~~~~wvy~~ 214 (227)
T PF00230_consen 138 FFSEFIGTFILVLVILAVADDKRKFPLGPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSG---IWDYFWVYWV 214 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTSSSTSSGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHT---HHTTTTHHHH
T ss_pred hhhhhhhhhHHHhhhhhhcccccccccccccceeEEEEEeecccccccccccccCchhhcCceeecc---cCCeEEEEEe
Confidence 9999999999999999998864332 2467999999999999999999999999999999999987 4999999999
Q ss_pred hhHHHHHHHHHHH
Q 029946 154 APIQATVIALWLF 166 (185)
Q Consensus 154 ~p~~Ga~~a~~~~ 166 (185)
+|++|+++++++|
T Consensus 215 ~P~~Ga~~a~~~Y 227 (227)
T PF00230_consen 215 GPFIGAILAALLY 227 (227)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhC
Confidence 9999999999987
No 7
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.6e-39 Score=259.94 Aligned_cols=165 Identities=22% Similarity=0.258 Sum_probs=141.6
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----C-----------CCCC
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI----G-----------RGPS 67 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~----~-----------~~~~ 67 (185)
.++++|+|| |||+|||||+++++.|++ +|++.+.|+++|++||++|+.++|.+++.. . ..|.
T Consensus 55 ~iy~~g~iS-GaHlNPAVTi~la~~g~f--p~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~ 131 (241)
T COG0580 55 AIYAFGGIS-GAHLNPAVTIALAVRGRF--PWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPG 131 (241)
T ss_pred HHHhccCcC-ccccChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCC
Confidence 467899999 999999999999999999 999999999999999999999999998642 1 1222
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHh---CCCC-
Q 029946 68 LNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYAR---GDHI- 143 (185)
Q Consensus 68 ~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~---~~~~- 143 (185)
. .+..++++.|+++||+|++.+++..++++.+....|+.+|+.++.+.+..++.||..+|||||+|||+.. ++..
T Consensus 132 ~-~~~~~~fl~E~v~T~~L~~~Ila~~~~~~~~~~~apl~iGllv~~i~~s~g~~TG~aiNPARdlGprl~~~~~g~~~~ 210 (241)
T COG0580 132 G-YSLGQAFLIEFVGTFVLVLGILALTDDGNANAGFAPLAIGLLVTAIGLSLGPTTGTAINPARDLGPRLAHSLAGWAAN 210 (241)
T ss_pred c-ccHHHHHHHHHHHHHHHHHHHHHhhccCcccccchHHHHHHHHHHHHHHhcCCCCCccChHHHHHHHHHHHhcCcccC
Confidence 2 3678999999999999999999988633224458999999999999999999999999999999999943 3111
Q ss_pred --CcccchhHhhhhHHHHHHHHHHHHHhcC
Q 029946 144 --TKEHILVYWLAPIQATVIALWLFKLVVR 171 (185)
Q Consensus 144 --~~~~~~vy~v~p~~Ga~~a~~~~~~~~~ 171 (185)
++.|.|+||++|++|+++++++|+.++.
T Consensus 211 ~g~~~y~wipvigpiiGa~lg~~~~~~~~~ 240 (241)
T COG0580 211 KGDSSYFWIPVIGPIVGAILGALLYKLLLG 240 (241)
T ss_pred CCCCCeEeeeehHHHHHHHHHHHHHHHHcc
Confidence 1258999999999999999999998764
No 8
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=2.2e-39 Score=263.59 Aligned_cols=165 Identities=22% Similarity=0.230 Sum_probs=144.1
Q ss_pred EeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCCCCCcchHHHHHHHH
Q 029946 4 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI---GRGPSLNVGIHHGALTEG 80 (185)
Q Consensus 4 i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~---~~~~~~~~s~~~~~~~E~ 80 (185)
+++.+++| |+|+|||+|++.++.|++ +|.+...|+++|++|+++|+.+.+.+.++. ...+.++.+..++++.|+
T Consensus 73 i~~~~~iS-Gah~NPAvtl~~~~~g~~--~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 149 (252)
T PLN00027 73 VSVGANIS-GGHVNPAVTFGAFIGGNI--TLLRGILYWIAQLLGSVVACLLLKFSTGGLETSAFSLSSGVGVWNAFVFEI 149 (252)
T ss_pred HHHHcccC-ccccChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCccHHHHHHHHH
Confidence 45678999 999999999999999999 999999999999999999999999887653 123445678899999999
Q ss_pred HHHHHHHHHHHHhhcCCCC--CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHH
Q 029946 81 LLTFAIVTISLGLARKIPG--SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQA 158 (185)
Q Consensus 81 ~~Tf~lv~~i~~~~~~~~~--~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~G 158 (185)
++||+|+++++....++++ .....|+.+|+.+..+.++.+++||+++||||||+|+++.+ .|+++|+||+||++|
T Consensus 150 i~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~g~~TG~~~NPAR~~gPal~~~---~~~~~wvy~vgP~~G 226 (252)
T PLN00027 150 VMTFGLVYTVYATAVDPKKGDLGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSW---TWTNHWVYWAGPLIG 226 (252)
T ss_pred HHHHHHHHHHHHhccccccCCccchHHHHHHHHHHHHHHhcccccccccCcchhHHHHHHhh---cchhhhHHHHHHHHH
Confidence 9999999999987543221 12467999999999999999999999999999999999976 689999999999999
Q ss_pred HHHHHHHHHHhcCCch
Q 029946 159 TVIALWLFKLVVRPLA 174 (185)
Q Consensus 159 a~~a~~~~~~~~~~~~ 174 (185)
+++++++|++++.++.
T Consensus 227 a~laa~~y~~l~~~~~ 242 (252)
T PLN00027 227 GGIAGLVYELIFIGST 242 (252)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999986533
No 9
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=2.5e-39 Score=262.67 Aligned_cols=166 Identities=23% Similarity=0.278 Sum_probs=144.7
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCCCCCcchHHHHHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG---RGPSLNVGIHHGALTE 79 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---~~~~~~~s~~~~~~~E 79 (185)
.+++++++| |+|+|||+|++.++.|++ +|.+...|+++|++|+++|+.+.+.+++++. .....+.+..++++.|
T Consensus 70 ~i~~~g~iS-Gah~NPAvt~~~~l~g~~--~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 146 (250)
T PLN00166 70 GVSIAANIS-GGHLNPAVTLGLAIGGNI--TIITGFFYWIAQCLGSIVACLLLVFVTNGESVPTHGVAAGLGAIEGVVME 146 (250)
T ss_pred HHHHHhccc-ccccCHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccCCCCcHHHHHHHH
Confidence 356789999 999999999999999999 9999999999999999999999999886531 1233456889999999
Q ss_pred HHHHHHHHHHHHHhhcCCCC--CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHH
Q 029946 80 GLLTFAIVTISLGLARKIPG--SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQ 157 (185)
Q Consensus 80 ~~~Tf~lv~~i~~~~~~~~~--~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~ 157 (185)
+++||+|+++++...+++.+ .....|+.+|+.++.+.+..+++||+++||||+|+|+++.+ .|+++|+||++|++
T Consensus 147 ~v~Tf~Lv~~i~~~~~~~~~~~~~~~~p~~iGl~v~~~~~~~~~~tG~~~NPAR~~gPal~~~---~~~~~wvywvgPi~ 223 (250)
T PLN00166 147 IVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSG---DFSQIWIYWVGPLV 223 (250)
T ss_pred HHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHcccCCCCCccCchHhhHHHHhcC---CCcccchhhHHHHH
Confidence 99999999999988653221 12468999999999999999999999999999999999976 69999999999999
Q ss_pred HHHHHHHHHHHhcCCch
Q 029946 158 ATVIALWLFKLVVRPLA 174 (185)
Q Consensus 158 Ga~~a~~~~~~~~~~~~ 174 (185)
|+++++++|+.++.+..
T Consensus 224 Ga~~aa~~y~~l~~~~~ 240 (250)
T PLN00166 224 GGALAGLIYGDVFIGSY 240 (250)
T ss_pred HHHHHHHHHHHHhcccC
Confidence 99999999998875443
No 10
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=1.9e-39 Score=264.16 Aligned_cols=174 Identities=21% Similarity=0.282 Sum_probs=149.8
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---CCCCCCcchHHHHHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG---RGPSLNVGIHHGALTE 79 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~---~~~~~~~s~~~~~~~E 79 (185)
.+++++++| |+|+|||+|++.++.|++ +|++.+.|+++|++|+++|+.+.+.++++.. .....+.+..++++.|
T Consensus 74 ~i~~~g~iS-Gah~NPAvtl~~~~~g~~--~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E 150 (256)
T PLN00167 74 AVYIAANIS-GGHVNPAVTFGMAVGGHI--SVPTAMFYWISQMLASVMACLFLKVTTVGQHVPTYKIAEEMTGFGASVLE 150 (256)
T ss_pred HHHHhhccc-ccccCHHHHHHHHHhCCC--cHhhhhHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHH
Confidence 356789999 999999999999999999 9999999999999999999999999876531 1122345678899999
Q ss_pred HHHHHHHHHHHHHhhcCCCC-CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHH
Q 029946 80 GLLTFAIVTISLGLARKIPG-SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQA 158 (185)
Q Consensus 80 ~~~Tf~lv~~i~~~~~~~~~-~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~G 158 (185)
+++|++|+++++...+++.+ .....|+.+|+.+..+.++.+++||+++||||||+|+++.+ .|+++|+||+||++|
T Consensus 151 ~i~T~~L~~~i~~~~~~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~a~NPAR~~gPal~~~---~~~~~wvywvgP~~G 227 (256)
T PLN00167 151 GVLTFGLVYTVYAAGDPRRGLLGAIGPLAIGLVAGANVLAAGPFSGGSMNPACAFGSAVVAG---SFKNQAVYWVGPLLG 227 (256)
T ss_pred HHHHHHHHHHHHHhccccccCCCCcchHHHHHHHHHHHHhccCCCCcccCcccchHHHHhcc---CccCcEEEeHHHHHH
Confidence 99999999999988774322 22367899999999999999999999999999999999875 688999999999999
Q ss_pred HHHHHHHHHHhcCCchhhhccccc
Q 029946 159 TVIALWLFKLVVRPLAEEKKDSKS 182 (185)
Q Consensus 159 a~~a~~~~~~~~~~~~~~~~~~k~ 182 (185)
+++++++|++++.+..+|..++..
T Consensus 228 a~l~a~~y~~l~~~~~~~~~~~~~ 251 (256)
T PLN00167 228 GAVAGLLYDNVVFPTQDDRGSSTG 251 (256)
T ss_pred HHHHHHHHHHHhCCCcCCCCCCcc
Confidence 999999999999887776665543
No 11
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=1.9e-39 Score=268.78 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=142.3
Q ss_pred EeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--------------------
Q 029946 4 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG-------------------- 63 (185)
Q Consensus 4 i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~-------------------- 63 (185)
+++++++| |||+|||||++.++.|++ +|++.+.|+++|++|+++|++++|.++++..
T Consensus 98 i~~~g~iS-G~h~NPAVTla~~l~g~i--~~~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (294)
T PTZ00016 98 LLVSAGIS-GGHLNPAVTLGNAVFGKF--PWKKLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGV 174 (294)
T ss_pred HHHhcccC-cCccCHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccce
Confidence 46788999 999999999999999999 9999999999999999999999999876410
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCC-CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhC--
Q 029946 64 RGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPG-SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARG-- 140 (185)
Q Consensus 64 ~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~-~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~-- 140 (185)
+.+.++.+..++++.|+++|++|+++++.+.+++.. .....|+.+|+.+..+.++.++.||+++||||||||+++..
T Consensus 175 f~t~p~~s~~~a~~~E~i~T~iLv~~ila~~d~~~~~~~~~~pl~IGl~v~~i~~~~g~~TG~smNPAR~fGPal~~~~~ 254 (294)
T PTZ00016 175 FATYPREGNFYAIFSELILTAILLLVILAITDPNNCPAFNYLPVAVGLLVFVIGISFGGNTGYALNPARDLGPRLFSAIL 254 (294)
T ss_pred eeCCCCccHHHHHHHHHHHHHHHHHHHHHhccCccCCCcCcccHHHHHHHHHHHHhccCCCCCcccchhhHHHHHHHHHh
Confidence 011234677899999999999999999999875422 12357899999999999999999999999999999999862
Q ss_pred -CCCCcc----cchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 141 -DHITKE----HILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 141 -~~~~~~----~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
+...|. ++|+||+||++|+++++++|++++.+..
T Consensus 255 ~g~~~~~~~~~~~WVy~vgP~vGa~~aally~~ll~~~~ 293 (294)
T PTZ00016 255 WGSEVFTKDNYYFWVPLVAPFVGAVLGMFLYDKFIPPLI 293 (294)
T ss_pred ccccccCcCCceeeeeehHHHHHHHHHHHHHHHHhCCCC
Confidence 112343 6899999999999999999999987653
No 12
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=4.7e-38 Score=257.73 Aligned_cols=166 Identities=20% Similarity=0.245 Sum_probs=144.7
Q ss_pred EeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCCCCcchHHHHHHHHH
Q 029946 4 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG--RGPSLNVGIHHGALTEGL 81 (185)
Q Consensus 4 i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~--~~~~~~~s~~~~~~~E~~ 81 (185)
+++++++| |+|+|||+|++.++.|++ +|++.+.|+++|++|+++|+.+.+.+++... ....+..+..++++.|++
T Consensus 93 i~~~g~vS-Gah~NPAvTla~~l~g~i--~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~p~~~~~~~~~~E~v 169 (274)
T PLN00183 93 VFSIGSIS-GAHVNPSVTIAFATFGHF--PWSKVPLYITAQTVGSVLATYVGVSVYGVKADLMTTKPAQGCSSAFWVEFI 169 (274)
T ss_pred HHHhhccC-ccccCHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcccHHHHHHHHHH
Confidence 45789999 999999999999999999 9999999999999999999999998886532 122334467899999999
Q ss_pred HHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHH
Q 029946 82 LTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVI 161 (185)
Q Consensus 82 ~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~ 161 (185)
+|++|+++++...++++......++.+|+.+++.+++.+++||+++||||+|+|+++.. .|+++|+||++|++|+++
T Consensus 170 ~T~iLv~~i~~~~~~~~~~~~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~~---~~~~~wvy~vapilGail 246 (274)
T PLN00183 170 ATFIVMFLAASLTSQPQSLGHLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVSW---DFKDIWIYITAPTIGAVA 246 (274)
T ss_pred HHHHHHHhhheeeccccCCCCceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhCC---ChhheehHHHHHHHHHHH
Confidence 99999999998877532233456899999999999999999999999999999999864 799999999999999999
Q ss_pred HHHHHHHhcCCchh
Q 029946 162 ALWLFKLVVRPLAE 175 (185)
Q Consensus 162 a~~~~~~~~~~~~~ 175 (185)
++++|++++.+...
T Consensus 247 aa~l~~~l~~~~~~ 260 (274)
T PLN00183 247 GALMFHLLRLRTQP 260 (274)
T ss_pred HHHHHHHHhccCCC
Confidence 99999999876654
No 13
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=257.27 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=147.2
Q ss_pred EEEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------------------
Q 029946 2 FLFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI------------------- 62 (185)
Q Consensus 2 ~~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~------------------- 62 (185)
+-+++-|+|| |||+|||||+++++.||+ +|+|.++|+++|++||++|++.+|.++.+.
T Consensus 79 ~gVyvag~iS-GgHlNPAVS~a~~~~g~~--p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAg 155 (316)
T KOG0224|consen 79 MGVYVAGRIS-GGHLNPAVSLAMCILGRL--PWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAG 155 (316)
T ss_pred HHHHhhcccc-ccccCHHHHHHHHHhcCC--ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceE
Confidence 4466789999 999999999999999999 999999999999999999999999998542
Q ss_pred --CCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCC-CCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHh
Q 029946 63 --GRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIP-GSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYAR 139 (185)
Q Consensus 63 --~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~-~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~ 139 (185)
...|.+.++++++|+.|+++|.+|+.+++++.|++. ....+.|+.+|+.++++....+..||..+||||||+||+++
T Consensus 156 iFaTyP~p~ls~~n~F~DqfigTa~L~~~l~aI~D~rN~~p~g~~p~~iG~lv~~Ig~s~G~N~GyaiNPARDlgPRlF~ 235 (316)
T KOG0224|consen 156 IFATYPAPHLSLWNGFFDQFIGTAMLVLCLFAITDKRNPIPTGLHPLVIGILVVAIGMSLGYNTGYAINPARDLGPRLFT 235 (316)
T ss_pred EEeecCchHhhhhHHHHHHHHHHHHHHhheeEEecCCCCCCcchhHHHHHHHHHHHHHHhhcccCcccCcccccchHHHH
Confidence 014677899999999999999999999999999643 34457899999999999999999999999999999999985
Q ss_pred ---CC--C---CCcccchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 140 ---GD--H---ITKEHILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 140 ---~~--~---~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
++ + ..-.+.|+.|++|++|+++++++|+++..-+.
T Consensus 236 ~~aGyG~~vF~~~~~~~WvPivgPl~Gai~G~~iY~~~Ig~h~ 278 (316)
T KOG0224|consen 236 SIAGYGPEVFSAGHNWWWVPIVGPLIGAILGGWIYDFFIGFHI 278 (316)
T ss_pred HHHhcchhhcccCCceeeeeehhhhhhhhhhhhhheeeeeccC
Confidence 21 1 11146799999999999999999999885543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=8.1e-37 Score=245.58 Aligned_cols=163 Identities=25% Similarity=0.379 Sum_probs=143.2
Q ss_pred EeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------C---------CCCCC
Q 029946 4 FAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI------G---------RGPSL 68 (185)
Q Consensus 4 i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~------~---------~~~~~ 68 (185)
+++++++| |+|+|||+|++.++.|++ +|++.+.|+++|++|+++|+.+.+.+++++ . +.|.+
T Consensus 49 ~~~~~~~s-ga~~NPa~t~~~~~~~~~--~~~~~~~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (228)
T cd00333 49 VYAVGHIS-GGHINPAVTLALAVGGRF--PLIRVIPYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSP 125 (228)
T ss_pred HHHhccCC-CCeEcHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCC
Confidence 46788999 999999999999999999 999999999999999999999999987642 0 13455
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCCC--CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcc
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARKIPG--SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKE 146 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~--~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~ 146 (185)
+.+..++++.|+++|++|++.++...+++++ +....++.+|+.+.+..++.+++||+++|||||++++++.+....|+
T Consensus 126 ~~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~~~ 205 (228)
T cd00333 126 GVSNGNAFFVEFIGTFILVLVVFATTDDPNGPPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARHWH 205 (228)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHccccccCCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccccc
Confidence 6788999999999999999999998875432 34467899999999999999999999999999999999876333599
Q ss_pred cchhHhhhhHHHHHHHHHHHHHh
Q 029946 147 HILVYWLAPIQATVIALWLFKLV 169 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~ 169 (185)
++|+||++|++|+++++++|+++
T Consensus 206 ~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 206 YFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred eeehhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999863
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3.2e-36 Score=240.28 Aligned_cols=160 Identities=22% Similarity=0.269 Sum_probs=138.8
Q ss_pred EEeeecccccCcccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----C---CCCCCcchHHH
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIG----R---GPSLNVGIHHG 75 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~----~---~~~~~~s~~~~ 75 (185)
.+++++++| |+|+|||+|++.++.|++ +|++.+.|+++|++|+++|+.+.+.++++.. . .+.++.+..++
T Consensus 48 ~~~~~~~~s-g~h~NPavt~~~~l~~~~--~~~~~~~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (216)
T TIGR00861 48 LVYCVGGIS-GAHLNPAVTIALLLGRRF--PLKRVPVYIVAQLIGAILGAALLYGLTSGLFPGNLAVNGSGAAGVSSGQA 124 (216)
T ss_pred HHHHHhccc-ccccCHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHccccccCCccccCCCCCcccHHHH
Confidence 356778999 999999999999999999 9999999999999999999999999887531 1 12345688999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCC--CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhh
Q 029946 76 ALTEGLLTFAIVTISLGLARKIPG--SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWL 153 (185)
Q Consensus 76 ~~~E~~~Tf~lv~~i~~~~~~~~~--~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v 153 (185)
++.|+++|++|+++++...+++++ +....++.+|+.+....+..+++||+++||||+++++++++ ...|+++|+||+
T Consensus 125 ~~~E~i~T~~lv~~~~~~~~~~~~~~~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~-~~~~~~~~vy~v 203 (216)
T TIGR00861 125 FFVEFIGTAILVLVIFATTDPRNRVPRGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAG-LAGWGNHWVYWV 203 (216)
T ss_pred HHHHHHHHHHHHHHHheeecCCCCCCCCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhc-cccccceeHHHH
Confidence 999999999999999988774322 22368999999999999999999999999999999999875 246899999999
Q ss_pred hhHHHHHHHHHHH
Q 029946 154 APIQATVIALWLF 166 (185)
Q Consensus 154 ~p~~Ga~~a~~~~ 166 (185)
+|++|+++++.+|
T Consensus 204 ap~~Ga~~a~~~y 216 (216)
T TIGR00861 204 GPIIGAILGALVY 216 (216)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998775
No 16
>PLN00026 aquaporin NIP; Provisional
Probab=99.74 E-value=1.2e-17 Score=138.48 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=87.9
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHhhc-CC-CC--Ccch-hHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhC
Q 029946 66 PSLNVGIHHGALTEGLLTFAIVTISLGLAR-KI-PG--SFYM-KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARG 140 (185)
Q Consensus 66 ~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~-~~-~~--~~~~-~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~ 140 (185)
+..+.+.++.++.|+++||+|++++++... ++ .+ .... .++.+|+++++.+++.+++||+|+||||++++++..+
T Consensus 64 ~~~~~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~ 143 (298)
T PLN00026 64 PPPDVSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRH 143 (298)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCC
Confidence 344667789999999999999999997533 21 11 1122 3579999999999999999999999999999999753
Q ss_pred CCCCcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 141 DHITKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 141 ~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
..|.+.|+||++|++|+++|+++++.++.+.
T Consensus 144 --~~~~~~~~YiiaQilGAi~aa~~~~~~~~~~ 174 (298)
T PLN00026 144 --FPWKHVPAYIAAQVSASICASFALKGVFHPF 174 (298)
T ss_pred --CcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5799999999999999999999999998653
No 17
>PLN00184 aquaporin NIP1; Provisional
Probab=99.73 E-value=2.7e-17 Score=136.52 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=85.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcC-CCC--Ccch--hHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCC
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARK-IPG--SFYM--KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHI 143 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~-~~~--~~~~--~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~ 143 (185)
+.+..+.++.|+++||+|++++++.... ..+ .... .++.+|+++++.+++.+++||+|+||||++++++..+ .
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~--~ 127 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGR--F 127 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCC--C
Confidence 3456789999999999999999987631 111 1112 3467799999999999999999999999999999643 4
Q ss_pred CcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 144 TKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 144 ~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
.|.+.|+||++|++|+++|+++++.++...
T Consensus 128 ~~~~~~~YiiaQllGA~lga~~~~~l~~~~ 157 (296)
T PLN00184 128 PLKQVPAYVISQVIGSTLAAATLRLLFGLD 157 (296)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 799999999999999999999999988643
No 18
>PLN00166 aquaporin TIP2; Provisional
Probab=99.68 E-value=3.3e-16 Score=127.42 Aligned_cols=101 Identities=22% Similarity=0.295 Sum_probs=84.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC----C--CC--C-cc-hhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHh
Q 029946 70 VGIHHGALTEGLLTFAIVTISLGLARK----I--PG--S-FY-MKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYAR 139 (185)
Q Consensus 70 ~s~~~~~~~E~~~Tf~lv~~i~~~~~~----~--~~--~-~~-~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~ 139 (185)
.+..+.++.|+++||+|+++.++...+ . ++ . .. ..++.+|+.+++.+++.+++||+|+||||++++.+..
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l~g 94 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAIGG 94 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhC
Confidence 456788999999999999999988542 1 10 1 11 2467899999999999999999999999999999963
Q ss_pred CCCCCcccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 140 GDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 140 ~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
...|.+.|+||++|++|+++++.+++.++.+
T Consensus 95 --~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~ 125 (250)
T PLN00166 95 --NITIITGFFYWIAQCLGSIVACLLLVFVTNG 125 (250)
T ss_pred --CCCHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3478899999999999999999999988754
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.67 E-value=4e-16 Score=128.32 Aligned_cols=103 Identities=15% Similarity=0.157 Sum_probs=86.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCC-C-CC-cch--hHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCC
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARKI-P-GS-FYM--KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHI 143 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~-~-~~-~~~--~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~ 143 (185)
+.+.++.++.|+++||+++++++....++ . ++ ... .++.+|+++++.+++.+++||+|+||||++++++..+ .
T Consensus 41 ~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPAvTla~~l~g~--i 118 (274)
T PLN00183 41 DLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPSVTIAFATFGH--F 118 (274)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhcC--C
Confidence 56778999999999999999999876532 1 11 112 4578999999999999999999999999999999743 4
Q ss_pred CcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 144 TKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 144 ~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
.|.+.|+||++|++|+++|+.+++.++...
T Consensus 119 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~ 148 (274)
T PLN00183 119 PWSKVPLYITAQTVGSVLATYVGVSVYGVK 148 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 788999999999999999999998887653
No 20
>PLN00167 aquaporin TIP5; Provisional
Probab=99.65 E-value=1e-15 Score=124.93 Aligned_cols=102 Identities=22% Similarity=0.361 Sum_probs=85.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCC----CCC------cchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHH
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARKI----PGS------FYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYA 138 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~----~~~------~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~ 138 (185)
..+.++.++.|+++||+|+++.++...++ +++ ....++.+|+.+++.+++.+++||+|+|||+++++.+.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 34567899999999999999999886521 111 12467999999999999999999999999999999996
Q ss_pred hCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 139 RGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 139 ~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
.+ ..|.+.|+||++|++|+++++.+++.++..
T Consensus 98 g~--~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 129 (256)
T PLN00167 98 GH--ISVPTAMFYWISQMLASVMACLFLKVTTVG 129 (256)
T ss_pred CC--CcHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 43 578999999999999999999999888654
No 21
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.64 E-value=1.2e-15 Score=126.76 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=85.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcCCC--C---CcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCc
Q 029946 71 GIHHGALTEGLLTFAIVTISLGLARKIP--G---SFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITK 145 (185)
Q Consensus 71 s~~~~~~~E~~~Tf~lv~~i~~~~~~~~--~---~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~ 145 (185)
+..+.++.|+++|++++++.++...+.. + +....++.+|+.+++.+++.+++||+|+|||+++++.+..+ ..|
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~--i~~ 125 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGK--FPW 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhcc--CCH
Confidence 4568899999999999999988764311 1 11234678999999999999999999999999999999644 579
Q ss_pred ccchhHhhhhHHHHHHHHHHHHHhcCCchh
Q 029946 146 EHILVYWLAPIQATVIALWLFKLVVRPLAE 175 (185)
Q Consensus 146 ~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~ 175 (185)
.+.|.||++|++|+++|+.+.+.++++..+
T Consensus 126 ~~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~ 155 (294)
T PTZ00016 126 KKLPGYFVAQLLGAFVGAACVYGLYYGFFK 155 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999999888876544
No 22
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.64 E-value=1.5e-15 Score=125.30 Aligned_cols=101 Identities=16% Similarity=0.189 Sum_probs=83.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcC-C-C-CC-c-chhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCC
Q 029946 70 VGIHHGALTEGLLTFAIVTISLGLARK-I-P-GS-F-YMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHIT 144 (185)
Q Consensus 70 ~s~~~~~~~E~~~Tf~lv~~i~~~~~~-~-~-~~-~-~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~ 144 (185)
.+..+.++.|+++||+|+++.++.... + . ++ . ....+.+|+.++..+++.+++||+|+|||+++++++..+ .+
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~--~~ 116 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRR--FP 116 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcC--CC
Confidence 356688999999999999999987542 1 1 11 1 122468999999999999999999999999999999754 57
Q ss_pred cccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 145 KEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 145 ~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
|.+.|+||++|++|+++|+++.+.++..
T Consensus 117 ~~~~~~Yi~aQ~lGa~~ga~~~~~~~~~ 144 (283)
T PLN00182 117 WYQVPLYIGAQLTGSLLASLTLRLMFNV 144 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999888743
No 23
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.63 E-value=1.2e-15 Score=122.69 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCC--C---Cc-chhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccc
Q 029946 75 GALTEGLLTFAIVTISLGLARKIP--G---SF-YMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHI 148 (185)
Q Consensus 75 ~~~~E~~~Tf~lv~~i~~~~~~~~--~---~~-~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~ 148 (185)
.++.|+++|++++++.++...+.. + .+ ...++.+|+.+...+++.+++||+|+|||+++++.+..+ .+|.+.
T Consensus 2 ~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~--~~~~~~ 79 (228)
T cd00333 2 KYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGR--FPLIRV 79 (228)
T ss_pred hhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCC--CCHHHH
Confidence 478899999999999998865311 1 11 245789999999999999999999999999999999754 479999
Q ss_pred hhHhhhhHHHHHHHHHHHHHhcCCchhh
Q 029946 149 LVYWLAPIQATVIALWLFKLVVRPLAEE 176 (185)
Q Consensus 149 ~vy~v~p~~Ga~~a~~~~~~~~~~~~~~ 176 (185)
|+||++|++|+++++.+++.++.++.++
T Consensus 80 ~~y~~aq~~Ga~~~~~~~~~~~~~~~~~ 107 (228)
T cd00333 80 IPYIIAQLLGAILGAALLYGLYYGLYLE 107 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence 9999999999999999999988876553
No 24
>PRK05420 aquaporin Z; Provisional
Probab=99.62 E-value=4.3e-15 Score=119.70 Aligned_cols=98 Identities=18% Similarity=0.219 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC--C-CC-C-cch-hHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcc
Q 029946 73 HHGALTEGLLTFAIVTISLGLARK--I-PG-S-FYM-KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKE 146 (185)
Q Consensus 73 ~~~~~~E~~~Tf~lv~~i~~~~~~--~-~~-~-~~~-~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~ 146 (185)
.+.++.|+++|++|+++.+..... + ++ + ... .++.+|+++++.+++.+++||+|+|||+++++.+.. ..+|.
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~--~i~~~ 79 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGG--RFPAK 79 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhC--CCCHH
Confidence 478899999999999998876431 1 11 1 122 368999999999999999999999999999999973 35799
Q ss_pred cchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 147 HILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
+.|.||++|++|+++++.+.+.++.+
T Consensus 80 ~~~~Y~~aQ~lGa~~ga~l~~~~~~~ 105 (231)
T PRK05420 80 ELVPYIIAQVVGGIAAAAVLYLIASG 105 (231)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999877777654
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.62 E-value=3.9e-15 Score=121.39 Aligned_cols=100 Identities=22% Similarity=0.293 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc------CCCC--C-c-chhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhC
Q 029946 71 GIHHGALTEGLLTFAIVTISLGLAR------KIPG--S-F-YMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARG 140 (185)
Q Consensus 71 s~~~~~~~E~~~Tf~lv~~i~~~~~------~~~~--~-~-~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~ 140 (185)
...+.++.|+++|++|+++.++... ++.+ . . ...++.+|+.+++.+++.+++||+|+||||++++.+..
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~g- 96 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIGG- 96 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHhC-
Confidence 3568899999999999999997742 1111 1 1 14579999999999999999999999999999999843
Q ss_pred CCCCcccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 141 DHITKEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 141 ~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
...|.+.|+||++|++|+++++.+++.+...
T Consensus 97 -~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 127 (252)
T PLN00027 97 -NITLLRGILYWIAQLLGSVVACLLLKFSTGG 127 (252)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3478899999999999999999999877643
No 26
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=99.57 E-value=1.5e-14 Score=116.18 Aligned_cols=106 Identities=18% Similarity=0.135 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhc----CCCCC---cc-hhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCC
Q 029946 71 GIHHGALTEGLLTFAIVTISLGLAR----KIPGS---FY-MKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDH 142 (185)
Q Consensus 71 s~~~~~~~E~~~Tf~lv~~i~~~~~----~~~~~---~~-~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~ 142 (185)
+..+-++.|+++|++|++...++.. ++.++ .. ...+.+|+.+++.+++.+++||+|+|||++++.++..+
T Consensus 3 ~~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~-- 80 (241)
T COG0580 3 TLTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGR-- 80 (241)
T ss_pred cHHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCC--
Confidence 4456689999999999999887754 12111 12 24689999999999999999999999999999999655
Q ss_pred CCcccchhHhhhhHHHHHHHHHHHHHhcCCchhhhc
Q 029946 143 ITKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKK 178 (185)
Q Consensus 143 ~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~~~~ 178 (185)
.+|.+...||++|++|+++++.+...++.++.++.|
T Consensus 81 fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~ 116 (241)
T COG0580 81 FPWRKVLPYIVAQVLGAFAGAALLYLLYYGKILETE 116 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 589999999999999999999999999988887666
No 27
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.54 E-value=3.4e-14 Score=113.40 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHhhcC---CC--CC-----cchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCccc
Q 029946 78 TEGLLTFAIVTISLGLARK---IP--GS-----FYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEH 147 (185)
Q Consensus 78 ~E~~~Tf~lv~~i~~~~~~---~~--~~-----~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~ 147 (185)
.|+++|++|+++.+....+ ++ ++ ....++.+|+.+...+++.+++||+|+|||+++++.+..+ .+|.+
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~--~~~~~ 78 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRR--FPLKR 78 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCC--CCHHH
Confidence 4999999999999988653 11 11 1235789999999999999999999999999999999754 47999
Q ss_pred chhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 148 ILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 148 ~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
.|+||++|++|+++++.+++.++.+..
T Consensus 79 ~~~y~~aQ~~Ga~~~~~~~~~~~~~~~ 105 (216)
T TIGR00861 79 VPVYIVAQLIGAILGAALLYGLTSGLF 105 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 999999999999999999998887653
No 28
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.52 E-value=2.8e-14 Score=116.57 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=86.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcC-----CCCCcch-hHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCC
Q 029946 71 GIHHGALTEGLLTFAIVTISLGLARK-----IPGSFYM-KTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHIT 144 (185)
Q Consensus 71 s~~~~~~~E~~~Tf~lv~~i~~~~~~-----~~~~~~~-~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~ 144 (185)
...+.+++||++|++|++..+++..+ ...+... .-+.+|+.++..+++.+.+||+|+|||++++..++.+ .+
T Consensus 30 ~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~--~p 107 (316)
T KOG0224|consen 30 ELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGR--LP 107 (316)
T ss_pred HHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcC--CC
Confidence 46788999999999999998887652 1223322 2488999999999999999999999999999999865 58
Q ss_pred cccchhHhhhhHHHHHHHHHHHHHhcCCchh
Q 029946 145 KEHILVYWLAPIQATVIALWLFKLVVRPLAE 175 (185)
Q Consensus 145 ~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~ 175 (185)
|.++.+|.++|++||.+++......+.+...
T Consensus 108 ~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~ 138 (316)
T KOG0224|consen 108 WKKFPVYVLAQFIGAFLGAATVYGLYYDAIN 138 (316)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777766554
No 29
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.50 E-value=1.3e-13 Score=111.03 Aligned_cols=103 Identities=19% Similarity=0.221 Sum_probs=88.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcCCC-----CCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCC
Q 029946 69 NVGIHHGALTEGLLTFAIVTISLGLARKIP-----GSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHI 143 (185)
Q Consensus 69 ~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~-----~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~ 143 (185)
..+.+|..+.||++|++++++.+......+ .......+..|+++++.+++.+++||+|+|||++++..+..+ .
T Consensus 7 ~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~--i 84 (238)
T KOG0223|consen 7 SVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK--I 84 (238)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC--C
Confidence 456789999999999999999998876221 112235689999999999999999999999999999888644 6
Q ss_pred CcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 144 TKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 144 ~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
++.+...||++|++|+++++.+.+.+.+.+
T Consensus 85 sl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~ 114 (238)
T KOG0223|consen 85 SLFRAVAYIVAQLLGAIAGAALLKVVTPGQ 114 (238)
T ss_pred cHHHhHHHHHHHHHHHHHHHHHHheecCcc
Confidence 888999999999999999999999998885
No 30
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.40 E-value=7.6e-13 Score=106.11 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhc---CCCCC-------c-chhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHH
Q 029946 70 VGIHHGALTEGLLTFAIVTISLGLAR---KIPGS-------F-YMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYA 138 (185)
Q Consensus 70 ~s~~~~~~~E~~~Tf~lv~~i~~~~~---~~~~~-------~-~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~ 138 (185)
.+.+|.++.|+++|+++++..+.... +...+ . ....+..|+.+...+++.+++||+|+|||.+++..+.
T Consensus 5 ~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla~~l~ 84 (227)
T PF00230_consen 5 PSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLAFALT 84 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhheeee
Confidence 45789999999999999999887532 11111 1 1234667889999999999999999999999998886
Q ss_pred hCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 139 RGDHITKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 139 ~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
.+ .+|.+...|+++|++|+++|+.+.+.++++.
T Consensus 85 g~--~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~ 117 (227)
T PF00230_consen 85 GR--ISWKKAIVYIIAQFLGAFLGALLVYALYPDS 117 (227)
T ss_dssp TS--SSHHHHHHHHHHHHHHHHHHHHHHHHHSTHH
T ss_pred ee--ecccceeeEEeeccccccccccchhhcccCc
Confidence 43 5888999999999999999999999888774
No 31
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=84.99 E-value=31 Score=31.59 Aligned_cols=115 Identities=17% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHH
Q 029946 28 GDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWI 107 (185)
Q Consensus 28 g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~ 107 (185)
...+++.+....++...++|+.+|....+.++|.-. + .. ++...+...+...+....+|+ .....
T Consensus 380 a~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~-------~-f~----~L~l~l~~~l~~~~~~~~~p~---~~~~g 444 (650)
T PF04632_consen 380 ATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLD-------G-FP----LLALVLAPFLFLGGLLMARPR---TAYIG 444 (650)
T ss_pred cCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-------c-HH----HHHHHHHHHHHHHHHHHcCch---HHHHH
Confidence 333558899999999999999999999999998731 1 11 111111111212222222333 33445
Q ss_pred HHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 108 SSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 108 igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
.++.+...... .+......|++.-+- + .++.++|.+++.+.++.+.+...
T Consensus 445 ~~~~v~f~~~~-~~~n~~~~d~~~f~n-----~-----------~la~l~G~~~a~l~~~li~p~~~ 494 (650)
T PF04632_consen 445 LGFAVFFLLLL-GPGNPYSYDFATFLN-----R-----------ALAILLGIVIAALVFRLIRPFSP 494 (650)
T ss_pred HHHHHHHHHHh-cCCCCCCCCHHHHHH-----H-----------HHHHHHHHHHHHHHHHHHCCCCh
Confidence 55555444433 333345556553221 1 56778999999999998877664
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=77.02 E-value=41 Score=27.82 Aligned_cols=152 Identities=11% Similarity=-0.034 Sum_probs=76.7
Q ss_pred HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCC--C-CCC-----------CCCCcchHHHHHHHHHHHHH
Q 029946 20 TVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQ--I-GRG-----------PSLNVGIHHGALTEGLLTFA 85 (185)
Q Consensus 20 vTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~--~-~~~-----------~~~~~s~~~~~~~E~~~Tf~ 85 (185)
....-++.|+. ++++.+..+.-=++|=++|+.+.-.+... . ... ...+.++.+.|+-=.++.++
T Consensus 86 ~~~~~~~~~~~--s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gI~CNwL 163 (268)
T PRK11562 86 FLTFGVKAGTI--SHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALCNWL 163 (268)
T ss_pred HHHHHHHhCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33344566777 78887777776666666666665444211 0 000 00134567777777778888
Q ss_pred HHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCC--CCCcc----cchhHhhhhHHHH
Q 029946 86 IVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGD--HITKE----HILVYWLAPIQAT 159 (185)
Q Consensus 86 lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~--~~~~~----~~~vy~v~p~~Ga 159 (185)
..+.++.....+. .-..+.+-+.+++-+. .++.=...|= --+...+..+. ...|. +.-.=.+|-++|+
T Consensus 164 Vclavw~~~~~~~---~gKi~~i~~pI~~Fv~--~GFEH~IANm-~~~~l~~~~~~~~~~~~~~~~~nlipvtLGNivGG 237 (268)
T PRK11562 164 VCLAIWMAIRTEG---AAKFIAIWWCLLAFIA--SGYEHSVANM-TLFALSWFGHHSEAYTLAGIGHNLLWVTLGNTLSG 237 (268)
T ss_pred HHHHHHHHHhccc---cchhHHHHHHHHHHHH--cCCcchhHhH-HHHHHHHHccCchhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777776544221 1222333333333222 2222223452 22333333221 01121 2222357777777
Q ss_pred -HHHHHHHHHhcCCchhhhcc
Q 029946 160 -VIALWLFKLVVRPLAEEKKD 179 (185)
Q Consensus 160 -~~a~~~~~~~~~~~~~~~~~ 179 (185)
++-++.|.+.++++.+++|.
T Consensus 238 ~v~vg~~y~~~~~~~~~~~~~ 258 (268)
T PRK11562 238 AVFMGLGYWYATPKANRPVAA 258 (268)
T ss_pred HHHHHHHHHHHhCCCcCchhh
Confidence 45667788888777764443
No 33
>PRK15086 ethanolamine utilization protein EutH; Provisional
Probab=64.58 E-value=9.8 Score=32.84 Aligned_cols=59 Identities=19% Similarity=0.230 Sum_probs=43.0
Q ss_pred CCCCcChHHHHHHHHHhCCCCC------cccchhHhhhhHHHHHHHHHHHHHhcCCchhhhcccc
Q 029946 123 TGGCMNPASVMGWAYARGDHIT------KEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSK 181 (185)
Q Consensus 123 tG~~lNPA~~l~~~~~~~~~~~------~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~k 181 (185)
-|=.+|=|-+.+.+.+-|+|.. .+....++++=++|+++|..+-.++.+++.++.+|.+
T Consensus 303 rgKvin~AFaVs~Afv~GdhLGFta~~~p~mI~p~iigKL~~Gi~Ai~~A~~~~~~~~~~~~~~~ 367 (372)
T PRK15086 303 RGKVINVAFAVSAAFVLGDHLGFTAGVQPTMIFPMIVGKLIGGITAIGVAILLSVKKAAALEKTE 367 (372)
T ss_pred cccEEeehhhhhHHHHhcccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhhh
Confidence 4456788888888887765432 3456789999999999999888888877665444433
No 34
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=57.09 E-value=4.4 Score=28.94 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.6
Q ss_pred CcccChHHHHHHHHcCC
Q 029946 13 GGAYNPLTVLASGISGD 29 (185)
Q Consensus 13 Gah~NPavTla~~~~g~ 29 (185)
+||+||.+.++..+.++
T Consensus 9 ~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 9 RGHVYPFLALARALRRR 25 (139)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcc
Confidence 89999999999999865
No 35
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=50.52 E-value=2.3e+02 Score=26.87 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHH
Q 029946 33 FLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSK 112 (185)
Q Consensus 33 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v 112 (185)
...|....+..+++|+.+|..+...+.|... +... +.=.+..++++........++. ......+|+++
T Consensus 394 T~sRa~~RiiGTliGallA~ll~v~l~P~l~-------~~~~--Llllllp~~llg~wv~~~~~R~---sYa~~~ag~T~ 461 (683)
T PRK11427 394 SYQKMVLRFGGAFCGAILALLFTLLVMPWLD-------NIVE--LLFVLAPIFLLGAWIATSSERS---SYIGTQMVVTF 461 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------cHHH--HHHHHHHHHHHHHHHHHhcccH---HHHHHHHHHHH
Confidence 3457777788888888888888887776521 1111 1111222222222222222221 24444556555
Q ss_pred HHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 113 LALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 113 ~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
..+.. .+..+...||...+ .+ .+.-++|.+++.+.+.+++++..
T Consensus 462 ~li~L--~~l~~p~~d~~~i~-dR---------------vl~tLLGi~iA~la~~lVwP~~~ 505 (683)
T PRK11427 462 ALATL--ENVFGPVYDLVEIR-DR---------------ALGILIGTVVSAVIYTFVWPESE 505 (683)
T ss_pred HHHHh--hcccCcccchHHHH-HH---------------HHHHHHHHHHHHHHHHhcCCCch
Confidence 44432 12223333543211 11 44557888888888888877654
No 36
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=49.78 E-value=11 Score=32.19 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=20.2
Q ss_pred EEeeecccccCcccChHHHHHHHHcC
Q 029946 3 LFAFLGKVTKGGAYNPLTVLASGISG 28 (185)
Q Consensus 3 ~i~~~g~is~Gah~NPavTla~~~~g 28 (185)
-|...|.=+ |||+.||+.++..+..
T Consensus 3 ~i~~~~GGT-GGHi~Pala~a~~l~~ 27 (352)
T PRK12446 3 KIVFTGGGS-AGHVTPNLAIIPYLKE 27 (352)
T ss_pred eEEEEcCCc-HHHHHHHHHHHHHHHh
Confidence 355566667 9999999999999875
No 37
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=42.94 E-value=1.9e+02 Score=23.91 Aligned_cols=147 Identities=12% Similarity=0.002 Sum_probs=76.2
Q ss_pred HHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCCC-------------CCCcchHHHHHHHHHHHHHH
Q 029946 23 ASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQI---GRGP-------------SLNVGIHHGALTEGLLTFAI 86 (185)
Q Consensus 23 a~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~---~~~~-------------~~~~s~~~~~~~E~~~Tf~l 86 (185)
.-...|++ +|++.+--+.-=.+|=++|+.++-.++.-. ...+ ..+.+..+.|.--.++.++.
T Consensus 95 ~~~~~k~I--s~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~~~~~~~~~a~~K~~~t~~~~F~~GI~cN~lV 172 (265)
T COG2116 95 VGVLSKKI--SWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQWGLFVLGVAEHKLHHTFLEAFAKGILCNWLV 172 (265)
T ss_pred HHHHhCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccchhHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 33456778 888888888877788888877766554111 1110 12345577777777777777
Q ss_pred HHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCccc-chhHh----hhhHHH-HH
Q 029946 87 VTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEH-ILVYW----LAPIQA-TV 160 (185)
Q Consensus 87 v~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~-~~vy~----v~p~~G-a~ 160 (185)
.+.++..-.. ++.....+.+-+-+ ..++..++.=...|-..-.-.+.. .+..+|.+ .|--+ +|.++| ++
T Consensus 173 clAvwm~~~~--k~~~~K~~~m~~pv--~~Fv~~GfeH~VANm~~i~~~~~~-~~~~~~~~fi~~Nlipv~lGNivGG~v 247 (265)
T COG2116 173 CLAVWMSYSA--KDGAAKIFAIILPV--MLFVASGFEHSVANMFMIPWAAVF-SGALTWADFILKNLIPVTLGNIVGGAV 247 (265)
T ss_pred HHHHHHHhcc--cchhhHHHHHHHHH--HHHHHcCCceeeehHHHHHHHHHc-CChhhhHHHHHHHHHHHHHhchhcchh
Confidence 7777665431 12222223333333 334434444345564332212222 22345555 33333 344443 34
Q ss_pred HHHHHHHHhcCCchhh
Q 029946 161 IALWLFKLVVRPLAEE 176 (185)
Q Consensus 161 ~a~~~~~~~~~~~~~~ 176 (185)
+-++.|+++++++.++
T Consensus 248 ~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 248 FVGLMYWYLYRKQNRY 263 (265)
T ss_pred hhhHHHHHhccccccc
Confidence 4566777776665543
No 38
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=40.12 E-value=42 Score=23.63 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=39.9
Q ss_pred CCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 124 GGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 124 G~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
|+.+.|-|.+-.-++.|...+.-+..+|++.-++|+=.+..+.+++...
T Consensus 53 GGTfd~~~~iE~g~~~G~~~~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELSDIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchHHHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 5689999999988887743344577899999999999999998887543
No 39
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=38.90 E-value=3.4e+02 Score=25.55 Aligned_cols=124 Identities=11% Similarity=0.026 Sum_probs=71.2
Q ss_pred cccChHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 029946 14 GAYNPLTVLASGISGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGL 93 (185)
Q Consensus 14 ah~NPavTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~ 93 (185)
+-...+|..+++-.-.- +.+...-++..+++|..+|....+.++|... + +. .++.=.++.++ .+.+.
T Consensus 381 a~~~aAV~~~LfA~~~n--P~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i~-----~-~f--~lL~laLap~~---~~~g~ 447 (652)
T PRK10631 381 AMVMIAVVTSLAMRLPN--PRMVAIDFLYGTLAALPLGALYFMVIIPNTQ-----Q-SM--LLLCISLGVLG---FFIGI 447 (652)
T ss_pred HHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----c-cH--HHHHHHHHHHH---HHHHH
Confidence 45566777777766654 7788889999999999999999999998730 0 11 11111122222 12222
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCC
Q 029946 94 ARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRP 172 (185)
Q Consensus 94 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~ 172 (185)
...++ ..+ .+|+.+..+.+. +...-...||+. ++.+ -++.++|..++.+.++.+.+.
T Consensus 448 ~~~~~---~~~--~lg~~i~f~~~l-~l~n~~~~d~~~-----FlN~-----------alA~v~Gi~~A~l~f~lirp~ 504 (652)
T PRK10631 448 EVQKR---RLG--SLGALASTINIL-VLDNPMTFHFSQ-----FLDS-----------ALGQIVGCFLALIVILLVRDN 504 (652)
T ss_pred Hhccc---HHH--HHHHHHHHHHHh-ccCCCCCcCHHH-----HHHH-----------HHHHHHHHHHHHHHHHHhCCC
Confidence 22222 121 355555555433 222334455553 2222 467889999999999666544
No 40
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=36.41 E-value=23 Score=31.86 Aligned_cols=33 Identities=12% Similarity=0.290 Sum_probs=27.0
Q ss_pred cchhHhhhhHHHHHHHHHHHHHhcCCchhhhcc
Q 029946 147 HILVYWLAPIQATVIALWLFKLVVRPLAEEKKD 179 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~ 179 (185)
+.|-|++.+.+|.+++.++..+...|+++++++
T Consensus 187 Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 187 WRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred eEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 678999999999999999988887777654443
No 41
>PRK14213 camphor resistance protein CrcB; Provisional
Probab=35.01 E-value=85 Score=22.45 Aligned_cols=27 Identities=11% Similarity=-0.065 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 029946 33 FLFTVGARIPAQVIGSITGVRFILDTF 59 (185)
Q Consensus 33 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~ 59 (185)
++.++..|+..+++++++++.+-+.+.
T Consensus 91 ~~~~a~~y~~~s~~~gl~a~~~G~~l~ 117 (118)
T PRK14213 91 RVKESILYIALTLAGSLLAFWCGWTII 117 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678899999999999999888766554
No 42
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=33.03 E-value=19 Score=24.83 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=15.0
Q ss_pred HHHhCCCCCcccchhHhhhhH
Q 029946 136 AYARGDHITKEHILVYWLAPI 156 (185)
Q Consensus 136 ~~~~~~~~~~~~~~vy~v~p~ 156 (185)
++-.|.+..|-.++.||.+|.
T Consensus 58 r~K~g~~~~~l~h~~YW~~p~ 78 (95)
T TIGR02762 58 RIKGGEGENFLLHLFYWYLPG 78 (95)
T ss_pred HHHcCCChhHHHHHHHHHccc
Confidence 344455667888999998775
No 43
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=32.81 E-value=34 Score=25.56 Aligned_cols=32 Identities=22% Similarity=0.233 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHhcCCchhhhcccccC
Q 029946 152 WLAPIQATVIALWLFKLVVRPLAEEKKDSKSK 183 (185)
Q Consensus 152 ~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~k~~ 183 (185)
.++.++.-...+++.+++.+...+.+||.|+|
T Consensus 99 vvSTllvl~vtg~v~~~l~r~~~~~~~~~~~~ 130 (141)
T PRK04125 99 IVATILLLACTGLFSQFILGKTEKEKEDKKEK 130 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccchhh
Confidence 45555555666777777766655544444443
No 44
>COG3192 EutH Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=32.21 E-value=46 Score=28.22 Aligned_cols=52 Identities=21% Similarity=0.229 Sum_probs=38.9
Q ss_pred CCCCcChHHHHHHHHHhCCCCCcc------cchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 123 TGGCMNPASVMGWAYARGDHITKE------HILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 123 tG~~lNPA~~l~~~~~~~~~~~~~------~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
-|-.+|=|.+.+.++.-|+|..+. -...-++|-+.|++.+..+-..+.++.+
T Consensus 320 rgKVinvAfaVsaafvlGdHLgFta~~~~~mi~pmi~GKL~GGvtAi~iA~~l~~~~~ 377 (389)
T COG3192 320 RGKVINVAFAVSAAFVLGDHLGFTAGNMNAMIFPMIVGKLIGGVTAIGVAIMLVPKDD 377 (389)
T ss_pred cCcEEeehhhhhHHHHhhchhhhhccccHHHHHHHHHHHHhhhHHHHHHHHhhCCHhH
Confidence 456688888888888777654332 3345688999999999999888877664
No 45
>PRK10478 putative PTS system fructose-like transporter subunit EIIC; Provisional
Probab=30.82 E-value=57 Score=28.22 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=21.1
Q ss_pred cchhHhhhhHHHHHHHHHHHHHhcCCch
Q 029946 147 HILVYWLAPIQATVIALWLFKLVVRPLA 174 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~~~~~~ 174 (185)
+.|.|+++=.+|.++++.+...+.++..
T Consensus 312 ~~l~~iiailig~vvtavl~~~~k~~~~ 339 (359)
T PRK10478 312 GKLGYIAAVAVGAVVTAVCVNVLKSLAR 339 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence 4577888889999998888776655443
No 46
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=29.97 E-value=62 Score=19.15 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhcCCchhhhc
Q 029946 155 PIQATVIALWLFKLVVRPLAEEKK 178 (185)
Q Consensus 155 p~~Ga~~a~~~~~~~~~~~~~~~~ 178 (185)
-+.++.+++++++....|+..++|
T Consensus 19 ~~~~~~~~~~~Hyi~vGPn~v~ee 42 (44)
T PF09163_consen 19 GMGATAAAGFFHYITVGPNRVEEE 42 (44)
T ss_dssp HHHHHHHHHHHHHHHH--B-S-SS
T ss_pred HHHHHHHHHHHHHhhcCCCCCCcC
Confidence 355666666667666677765543
No 47
>PF14990 DUF4516: Domain of unknown function (DUF4516)
Probab=29.65 E-value=87 Score=18.82 Aligned_cols=42 Identities=10% Similarity=0.030 Sum_probs=28.1
Q ss_pred CcccchhHhhhhHHHHHHHHHHHHHhcCCchhhhcccccCCC
Q 029946 144 TKEHILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSKSKSE 185 (185)
Q Consensus 144 ~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~k~~~~ 185 (185)
.|.........-++.-+.|+-+.+.+++|+....+-.++.+|
T Consensus 6 ~~~~yl~~~~~s~~sM~aGA~vVH~~ykPdltiP~i~~~~~~ 47 (47)
T PF14990_consen 6 SWPSYLKSLVASLLSMLAGASVVHNIYKPDLTIPEIPPKPGE 47 (47)
T ss_pred cHHHHHHHHHHHHHHHHhhhHHHHHHhCccCCCCCCCCCCCC
Confidence 444444445666777788888888899998876555554443
No 48
>PRK11404 putative PTS system transporter subunits IIBC; Provisional
Probab=29.25 E-value=44 Score=30.03 Aligned_cols=35 Identities=6% Similarity=0.084 Sum_probs=27.7
Q ss_pred cchhHhhhhHHHHHHHHHHHHHhcCCchhhhcccc
Q 029946 147 HILVYWLAPIQATVIALWLFKLVVRPLAEEKKDSK 181 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~~~~~~k 181 (185)
+.|.|+++=++|+++.++++.++.+...+++||..
T Consensus 440 ~~~~~~~~~~vG~~v~a~~~~~~k~~~~~~~~~~~ 474 (482)
T PRK11404 440 PVGSFYLVLAIGLALNISFIIVLKGLWLRRKAKAA 474 (482)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHhh
Confidence 45789999999999999999888766666555543
No 49
>TIGR02587 putative integral membrane protein TIGR02587. Members of this family are found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus in a conserved two-gene neighborhood. This family, as defined, includes some members of COG4711 but is narrower and strictly bacterial. Members appear to span the membrane seven times.
Probab=27.78 E-value=3.3e+02 Score=22.62 Aligned_cols=65 Identities=12% Similarity=0.033 Sum_probs=45.2
Q ss_pred HHHHHHcCCC--CchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcchHHHHHHHHHHHHH
Q 029946 21 VLASGISGDF--SNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPS---LNVGIHHGALTEGLLTFA 85 (185)
Q Consensus 21 Tla~~~~g~~--~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~---~~~s~~~~~~~E~~~Tf~ 85 (185)
++..++.|++ .+++.+.+.+++.|-+=+-+|+++.+...+++...++ .+.+..++.+.|...|.+
T Consensus 84 ~~~L~lfgri~~~~pl~e~Lg~vivl~vP~sIGaAlaR~~L~~~~~~~~~~~~~~~~~~~~l~dl~~~~~ 153 (271)
T TIGR02587 84 AAMLWLFGIITPETSLKEIVGKVAFQGVPFSLGAALARQQLGDTNQNNSLSEGKQNSEYGYLAELFAMLV 153 (271)
T ss_pred HHHHHHHccCCCCCCHHHHHHHHHHHhCcHHHHHHHHHHHhCCCcCccccchhhhcchhhhHHHHHHHHH
Confidence 4556666775 3489999999999999999999999998865421111 122345567777766655
No 50
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=27.30 E-value=1.8e+02 Score=22.37 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=44.0
Q ss_pred CCCcchhHHHHHHHHHHHHHHhcCCCCCC------cChHHHHHHHHHhCCCCCcccchhH-----hhhhHHHHHHHHHHH
Q 029946 98 PGSFYMKTWISSVSKLALHILGSDMTGGC------MNPASVMGWAYARGDHITKEHILVY-----WLAPIQATVIALWLF 166 (185)
Q Consensus 98 ~~~~~~~~~~igl~v~~~~~~~~~~tG~~------lNPA~~l~~~~~~~~~~~~~~~~vy-----~v~p~~Ga~~a~~~~ 166 (185)
|.+...+.+.+.+++...+++.. ++.. =.|..+++-.+..++. -.|++ .+..++++++=.+++
T Consensus 74 p~~iilglivvvlvi~~liwa~~--~~a~~krmr~~hp~~~l~gvllv~yf----li~v~~~vlv~~F~il~Pv~L~lvH 147 (188)
T KOG4050|consen 74 PQDIILGLIVVVLVIGTLIWAAS--ADANIKRMRTDHPLVTLAGVLLVGYF----LISVFGGVLVFAFAILFPVLLVLVH 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHhhcCcHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666665666543 3333 2677777776655420 11221 233455566666666
Q ss_pred HHhcCCchhhhcccccCC
Q 029946 167 KLVVRPLAEEKKDSKSKS 184 (185)
Q Consensus 167 ~~~~~~~~~~~~~~k~~~ 184 (185)
-.+.-++.|.|-+||.|+
T Consensus 148 ASLRLRnikNkleN~iEs 165 (188)
T KOG4050|consen 148 ASLRLRNIKNKLENKIES 165 (188)
T ss_pred HHHHHhhHHHHHHHHHhh
Confidence 666666667666666553
No 51
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=27.26 E-value=2.6e+02 Score=20.63 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhc-----CCCCCCcChHHHHHHHH
Q 029946 73 HHGALTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGS-----DMTGGCMNPASVMGWAY 137 (185)
Q Consensus 73 ~~~~~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~-----~~tG~~lNPA~~l~~~~ 137 (185)
..+++.-++.+.+....++..-.+ .+....+.+++.+....+..| |.+|-..=-..|++.+.
T Consensus 4 v~aLliKf~~~~ivl~i~L~~~~~---~sf~~~l~~sl~ltvvaY~iGDl~ILPr~gN~~AtiaD~~La~ 70 (136)
T PF10710_consen 4 VKALLIKFVMTIIVLYIILGLFFG---ASFGDILLISLVLTVVAYLIGDLFILPRTGNIVATIADFGLAF 70 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHheeeCCCChhHHHHHHHHHH
Confidence 456788888888888888766542 234556777877777777655 34444444444555444
No 52
>PRK10290 superoxide dismutase; Provisional
Probab=27.25 E-value=25 Score=27.19 Aligned_cols=9 Identities=33% Similarity=0.770 Sum_probs=7.3
Q ss_pred ccCcccChH
Q 029946 11 TKGGAYNPL 19 (185)
Q Consensus 11 s~Gah~NPa 19 (185)
|.|+||||.
T Consensus 88 sAGgHfNP~ 96 (173)
T PRK10290 88 AAGGHLDPQ 96 (173)
T ss_pred ccCCccCCC
Confidence 459999995
No 53
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=26.02 E-value=2.8e+02 Score=24.22 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhh
Q 029946 70 VGIHHGALTEGLLTFAIVTISLGLA 94 (185)
Q Consensus 70 ~s~~~~~~~E~~~Tf~lv~~i~~~~ 94 (185)
+-.....+.|++..+-++-.....+
T Consensus 320 f~lgd~~l~~~~~~i~~mP~lvl~a 344 (433)
T PF03092_consen 320 FALGDTILEEVIGMIAFMPSLVLAA 344 (433)
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778777766655444333
No 54
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=25.36 E-value=75 Score=28.62 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 029946 33 FLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLG 92 (185)
Q Consensus 33 ~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~ 92 (185)
--.+...+..+|-+|.++|.+++++++.-+.. .....+.-.|+.|.+.|+.+-++++.
T Consensus 168 ~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~--~~~~gW~~~FiI~G~i~~~~gi~~f~ 225 (495)
T KOG2533|consen 168 RGLRMGIWYASASLGNIFGGLIAYGVFKLNGS--GGLAGWRWLFIIEGVITLVLGIVVFF 225 (495)
T ss_pred hhhhHHHHHHhcchhhHHHHHHHHHhhhhcCC--CCcCCceeehhHHHHHHHHHHheEEE
Confidence 56788888889999999999999998763211 11123444688888888887766553
No 55
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=25.01 E-value=30 Score=26.23 Aligned_cols=10 Identities=30% Similarity=0.571 Sum_probs=7.5
Q ss_pred cccCcccChH
Q 029946 10 VTKGGAYNPL 19 (185)
Q Consensus 10 is~Gah~NPa 19 (185)
.|-|+||||-
T Consensus 59 ~SaGphFNp~ 68 (154)
T KOG0441|consen 59 KSAGPHFNPN 68 (154)
T ss_pred hcCCCCCCCc
Confidence 3457999995
No 56
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter []. Mammalian renal sodium/dicarboxylate cotransporter [], which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 []. Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=23.12 E-value=1.2e+02 Score=26.82 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCcChHHHHHHHH-HhCCCCCcccchhHhhhhHH-HHHHHHHHHHHhcCCch
Q 029946 106 WISSVSKLALHILGSDMTGGCMNPASVMGWAY-ARGDHITKEHILVYWLAPIQ-ATVIALWLFKLVVRPLA 174 (185)
Q Consensus 106 ~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~-~~~~~~~~~~~~vy~v~p~~-Ga~~a~~~~~~~~~~~~ 174 (185)
+..+.......-.....+|...|+. ..+..- ..+.+.+|.+...|-+-|.+ ...+..++.+.+++++.
T Consensus 175 l~l~~~~~a~~~g~~~~~g~~~n~i-~~~~l~~~~g~~isf~~w~~~~~p~~ii~~~~~~~~~~~l~~~~~ 244 (471)
T PF00939_consen 175 LMLGIAFAASIGGMGTLTGSAPNLI-AAGFLESATGISISFLDWFIYALPPGIIMLVLMWLILYKLFKPDV 244 (471)
T ss_pred HHHHHhhhccccccccccCCCchHH-HHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4444444444433444567667763 333211 12333344333344343333 34444445556666653
No 57
>COG1289 Predicted membrane protein [Function unknown]
Probab=23.10 E-value=6.2e+02 Score=23.59 Aligned_cols=123 Identities=18% Similarity=0.109 Sum_probs=69.1
Q ss_pred hHHHHHHHHcCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHhhcC
Q 029946 18 PLTVLASGISGD-FSNFLFTVGARIPAQVIGSITGVRFILDTFPQIGRGPSLNVGIHHGALTEGLLTFAIVTISLGLARK 96 (185)
Q Consensus 18 PavTla~~~~g~-~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~~~~~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~~~~ 96 (185)
...|..+.+... .+++.++..-.+..=++|..+|..+.+...|.. .+.++. +++..+++. ......
T Consensus 383 ~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~----------~~~l~~-l~~~~~l~~--~~~~~~ 449 (674)
T COG1289 383 ILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLI----------PGLLLL-LLLAALLFA--AGIRLA 449 (674)
T ss_pred HHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc----------hhHHHH-HHHHHHHHH--HHHHhc
Confidence 456666666666 666788999999999999999998888887763 111111 112222221 111111
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 97 IPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 97 ~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
+.....+.+++.+..+....+. |+....-+++... .+|-++|..++.+++.......
T Consensus 450 ---~~~~a~~~i~l~v~~~~~l~~~------~~~~~~~~r~~d~-----------~iG~lIa~~~a~~v~~~~~~~~ 506 (674)
T COG1289 450 ---KYRLATLGITLLVLFLVGLLGS------NGPDYDLPRFLDT-----------LLGSLIALALAFLVWPLWRPRR 506 (674)
T ss_pred ---chhHHHHHHHHHHHHHHHHccc------chhhhhHHHHHHH-----------HHHHHHHHHHHHHHHHHhcccc
Confidence 2234555666665555443221 5555555555543 4566666666666665554443
No 58
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=22.85 E-value=4.7e+02 Score=22.10 Aligned_cols=138 Identities=14% Similarity=0.034 Sum_probs=63.4
Q ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCCC----CCCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 029946 19 LTVLASGISGDFSNFLFTVGARIPAQVIGSIT-GVRFILDTFPQIGR----GPSLNVGIHHGALTEGLLTFAIVTISLGL 93 (185)
Q Consensus 19 avTla~~~~g~~~~~~~~~~~yi~aQ~lGa~~-g~~~~~~~~~~~~~----~~~~~~s~~~~~~~E~~~Tf~lv~~i~~~ 93 (185)
+-.++..+.-|.-+...-.+.--+++++|+++ |..+..-+-+.-.. ..++......+++.-.+.+.+.++.....
T Consensus 7 an~~gt~Vgs~al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~~i~t~~ 86 (326)
T PF01384_consen 7 ANSFGTAVGSRALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWLLIATWL 86 (326)
T ss_pred HHHHHHHHhcCccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444433211334555667889999999 55555544432111 10111111223333344444433332222
Q ss_pred hcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 94 ARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 94 ~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
+-|-+ ..-..+|-.+.+.....+ -...|....+.. ++. . ..+.|++|.+++..+|+.+..-.
T Consensus 87 --glPvS--tThalvGal~G~~l~~~g---~~~v~w~~~~~~-I~~----~------wv~sPlia~~~a~~l~~~~~~~~ 148 (326)
T PF01384_consen 87 --GLPVS--TTHALVGALIGAGLASGG---FSAVNWSKGLLK-IVL----S------WVISPLIAFILAYILYRLIRRIF 148 (326)
T ss_pred --CCCch--HHHHHHHHHHHHHHHHhh---hhhchHHHHHHH-HHH----H------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 112234434443333321 134555522222 211 1 27899999999999998775444
Q ss_pred h
Q 029946 174 A 174 (185)
Q Consensus 174 ~ 174 (185)
.
T Consensus 149 ~ 149 (326)
T PF01384_consen 149 L 149 (326)
T ss_pred H
Confidence 3
No 59
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=22.77 E-value=28 Score=26.10 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=0.0
Q ss_pred cchhHhhhhHHHHHHHHHHHHHhcCCchh
Q 029946 147 HILVYWLAPIQATVIALWLFKLVVRPLAE 175 (185)
Q Consensus 147 ~~~vy~v~p~~Ga~~a~~~~~~~~~~~~~ 175 (185)
.-|+-|++|++.-+++..+.....++..+
T Consensus 100 ~~~~lW~~P~~~l~~g~~~~~~~~rr~~~ 128 (148)
T PF03918_consen 100 FTWLLWLGPFLLLLLGGALLFRRLRRWRR 128 (148)
T ss_dssp -----------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46888999999999998877766665554
No 60
>PRK14220 camphor resistance protein CrcB; Provisional
Probab=22.75 E-value=1.8e+02 Score=20.87 Aligned_cols=26 Identities=8% Similarity=-0.194 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029946 33 FLFTVGARIPAQVIGSITGVRFILDT 58 (185)
Q Consensus 33 ~~~~~~~yi~aQ~lGa~~g~~~~~~~ 58 (185)
.+.++..|++.+++++++++.+-+.+
T Consensus 91 ~~~~a~~y~~~s~~~gl~a~~lG~~l 116 (120)
T PRK14220 91 NYRVLKLYALLSYLGGLILVFCGYYL 116 (120)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999998775543
No 61
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=22.26 E-value=1.4e+02 Score=15.97 Aligned_cols=25 Identities=28% Similarity=0.331 Sum_probs=16.6
Q ss_pred hhHhhhhHHHHHHHHHHHHHhcCCc
Q 029946 149 LVYWLAPIQATVIALWLFKLVVRPL 173 (185)
Q Consensus 149 ~vy~v~p~~Ga~~a~~~~~~~~~~~ 173 (185)
|-||++-+++..+.+.+...+++|+
T Consensus 3 ~~~~l~~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 3 LDYSLAGAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 5678877777766666655555554
No 62
>PF14034 Spore_YtrH: Sporulation protein YtrH
Probab=21.98 E-value=2.9e+02 Score=19.42 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=38.1
Q ss_pred CcccChHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 029946 13 GGAYNPLTVLASGI-SGDFSNFLFTVGARIPAQVIGSITGVRFILDTFPQ 61 (185)
Q Consensus 13 Gah~NPavTla~~~-~g~~~~~~~~~~~yi~aQ~lGa~~g~~~~~~~~~~ 61 (185)
||-|.|--.++.-+ .|+.+ +..|=+.|+++-++|+-.|..+...+.++
T Consensus 53 GGTfd~~~~iE~g~~~G~~~-~~~KQ~l~Il~Af~GA~~g~~lI~wl~~~ 101 (102)
T PF14034_consen 53 GGTFDTFRSIEKGFFEGELS-DIIKQLLYILSAFLGAHTGYILIRWLTGG 101 (102)
T ss_pred hcCchHHHHHHhHhcCCchH-HHHHHHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 67788888888744 45553 67888999999999999999998877543
No 63
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.46 E-value=1e+02 Score=21.22 Aligned_cols=11 Identities=18% Similarity=0.350 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 029946 156 IQATVIALWLF 166 (185)
Q Consensus 156 ~~Ga~~a~~~~ 166 (185)
+++-++|+++.
T Consensus 8 lL~l~LA~lLl 18 (95)
T PF07172_consen 8 LLGLLLAALLL 18 (95)
T ss_pred HHHHHHHHHHH
Confidence 34445554443
No 64
>PF14241 DUF4341: Domain of unknown function (DUF4341)
Probab=21.29 E-value=1.3e+02 Score=18.89 Aligned_cols=54 Identities=9% Similarity=0.128 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhHHHHHH
Q 029946 103 MKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPIQATVI 161 (185)
Q Consensus 103 ~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~~Ga~~ 161 (185)
.+.+.+|+......+..+.+.|.+=+=.+.+.+ .....++-+.+.+|=++|+.+
T Consensus 7 ~GG~lIGla~~~ll~~~Gri~GiSGil~~~~~~-----~~~~~~W~~~fl~Gl~~g~~l 60 (62)
T PF14241_consen 7 IGGLLIGLAASLLLLLNGRIAGISGILSGLLSP-----NKPDRDWRLAFLAGLILGGFL 60 (62)
T ss_pred HHHHHHHHHHHHHHHHcCcceehHHHHHHHhCC-----CCCCccHHHHHHHHHHHHHHH
Confidence 456788888888888888888776333332222 112333355666665655554
No 65
>PRK14205 camphor resistance protein CrcB; Provisional
Probab=21.02 E-value=2e+02 Score=20.53 Aligned_cols=25 Identities=16% Similarity=-0.103 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 029946 33 FLFTVGARIPAQVIGSITGVRFILD 57 (185)
Q Consensus 33 ~~~~~~~yi~aQ~lGa~~g~~~~~~ 57 (185)
++..++.|+..+++++++++.+-+.
T Consensus 90 ~~~~a~~y~~~s~~~gl~a~~lG~~ 114 (118)
T PRK14205 90 NFSTFLLYLSATYIVGILFAFLGMK 114 (118)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999999999998876554
No 66
>PLN02642 copper, zinc superoxide dismutase
Probab=20.93 E-value=40 Score=25.81 Aligned_cols=10 Identities=40% Similarity=0.979 Sum_probs=7.4
Q ss_pred cccCcccChH
Q 029946 10 VTKGGAYNPL 19 (185)
Q Consensus 10 is~Gah~NPa 19 (185)
.|.|+||||.
T Consensus 63 ~SaGgHfNP~ 72 (164)
T PLN02642 63 ISTGPHFNPL 72 (164)
T ss_pred ccccCcccCC
Confidence 3458999995
No 67
>PF03739 YjgP_YjgQ: Predicted permease YjgP/YjgQ family; InterPro: IPR005495 Members of this family are predicted integral membrane proteins of unknown function. They are about 350 amino acids long, contain about 6 transmembrane regions and may be permeases, although there is no verification of this.; GO: 0016021 integral to membrane
Probab=20.39 E-value=5e+02 Score=21.49 Aligned_cols=78 Identities=15% Similarity=0.171 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcchhHHHHHHHHHHHHHHhcCCCCCCcChHHHHHHHHHhCCCCCcccchhHhhhhH
Q 029946 77 LTEGLLTFAIVTISLGLARKIPGSFYMKTWISSVSKLALHILGSDMTGGCMNPASVMGWAYARGDHITKEHILVYWLAPI 156 (185)
Q Consensus 77 ~~E~~~Tf~lv~~i~~~~~~~~~~~~~~~~~igl~v~~~~~~~~~~tG~~lNPA~~l~~~~~~~~~~~~~~~~vy~v~p~ 156 (185)
+..-+..+++++..+......+++.....+..++.+....+.. ..++..+..+ ...+-.|..|+.++
T Consensus 276 ~~~p~~~l~~~lla~~l~~~~~r~~~~~~~~~~l~~~~~~~~~-----------~~~~~~l~~~--~~l~p~~a~w~p~i 342 (354)
T PF03739_consen 276 IALPLSCLILVLLALPLGIRFPRSGRISSLFIALLLGFLYYIL-----------FSFFSSLGEN--GNLPPFIAAWLPNI 342 (354)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCchHHHHHHHHHHHHHHHH-----------HHHHHHHHHc--CCccHHHHHHHHHH
Confidence 4455556666665555554333333333355555555443332 2333334322 25556788899999
Q ss_pred HHHHHHHHHHH
Q 029946 157 QATVIALWLFK 167 (185)
Q Consensus 157 ~Ga~~a~~~~~ 167 (185)
+-.+++..+++
T Consensus 343 i~~~~~~~l~~ 353 (354)
T PF03739_consen 343 IFLILGLYLLR 353 (354)
T ss_pred HHHHHHHHHHh
Confidence 98888877664
Done!