Query 029947
Match_columns 185
No_of_seqs 150 out of 1011
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 06:08:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1944 Peroxisomal membrane p 100.0 7.4E-42 1.6E-46 274.8 15.1 166 16-183 46-217 (222)
2 PF04117 Mpv17_PMP22: Mpv17 / 99.9 5.6E-26 1.2E-30 150.9 4.1 68 111-179 1-68 (68)
3 PF10929 DUF2811: Protein of u 56.8 21 0.00046 22.6 3.5 30 35-64 11-40 (57)
4 PF03818 MadM: Malonate/sodium 44.4 65 0.0014 20.5 4.3 34 11-44 3-36 (60)
5 COG1284 Uncharacterized conser 37.5 1.9E+02 0.0041 24.3 7.4 57 19-75 111-186 (289)
6 smart00337 BCL BCL (B-Cell lym 35.5 93 0.002 21.5 4.5 31 32-63 32-62 (100)
7 TIGR02163 napH_ ferredoxin-typ 33.6 2E+02 0.0044 23.4 6.9 80 50-131 4-102 (255)
8 PF00140 Sigma70_r1_2: Sigma-7 30.3 26 0.00056 19.8 0.8 18 7-24 2-19 (37)
9 KOG0769 Predicted mitochondria 29.3 1.4E+02 0.0031 25.1 5.2 71 35-105 47-126 (308)
10 PF03988 DUF347: Repeat of Unk 29.1 1.4E+02 0.0031 18.3 4.6 45 21-72 4-48 (55)
11 TIGR02230 ATPase_gene1 F0F1-AT 27.6 1.3E+02 0.0029 21.2 4.1 33 50-82 39-73 (100)
12 PF06027 DUF914: Eukaryotic pr 25.8 1.4E+02 0.0031 25.6 4.8 51 19-70 165-217 (334)
13 PRK09609 hypothetical protein; 23.9 3.6E+02 0.0079 23.0 6.8 54 27-82 58-111 (312)
14 PF09734 Tau95: RNA polymerase 20.4 87 0.0019 26.3 2.5 61 3-74 231-291 (310)
No 1
>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]
Probab=100.00 E-value=7.4e-42 Score=274.85 Aligned_cols=166 Identities=34% Similarity=0.645 Sum_probs=157.4
Q ss_pred HhhCchHHHHHHHHHHH-HHHHHHHHhhhcC-----CcchHHHHHHHHHHHhhhccchhhhHHHHHHhHccCCCchHHHH
Q 029947 16 LQVHPLRTKAITAGILA-GCSDAIAQKISGV-----KKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKKDKKTVA 89 (185)
Q Consensus 16 l~~~Pl~t~~~t~~~l~-~~gD~~aQ~~~~~-----~~~D~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~~~~~~~ 89 (185)
...+|+++++++++.+. ..||.++|.++.+ +.+|+.|++||+++|+++.||.+|+||+.||+.+|. ++..+++
T Consensus 46 ~~~~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~~~~~d~~rtlr~~~~G~~f~gp~~~~Wy~~L~~~~p~-~~~~~~~ 124 (222)
T KOG1944|consen 46 FSLYPLLTKAITTSLLLAAAGDVISQSLEGRSKKLFQTLDLTRTLRMGIFGFLFVGPTLHYWYRLLSKLFPK-KTLITVV 124 (222)
T ss_pred hhhhhHHHHHHHHHHHHHHhchhhhhhhhhhcccccccccHHHHHHHHhhhhheeccchhHHHHHHHHHccC-ccHHHHH
Confidence 46789888999888888 9999999999742 568999999999999889999999999999999998 7999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHhcCCChHhHHHHHHhhCHHHHHhCcccchHHHhHhhhcccCCchhhHHHHHHHHH
Q 029947 90 KKVLLEQLTSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCW 169 (185)
Q Consensus 90 ~Kv~~Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rv~~~~~v~~~W 169 (185)
+|++.||++++|+.+.+|+.+++ ++||++.++.+++++++++|++++||++||++|++||++||+++|+++.|+++++|
T Consensus 125 ~kvl~dql~~~P~~~~~ff~~~~-~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~VP~~~rvl~~~~vsl~W 203 (222)
T KOG1944|consen 125 KKVLLDQLVFAPLFIVVFFLLMG-LLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRLVPLQYRVLFVNIVSLVW 203 (222)
T ss_pred HHHHHhhhhhchHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEEccccceehhhhhHHHHH
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcchhhh
Q 029947 170 AIFLNLKARSVAIK 183 (185)
Q Consensus 170 ~~yLS~~~~~~~~~ 183 (185)
++|||+++++.+++
T Consensus 204 ~~~Ls~~~~~~~~~ 217 (222)
T KOG1944|consen 204 NTYLSYKNASLVEL 217 (222)
T ss_pred HHHHHHHhhccccc
Confidence 99999999998443
No 2
>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane
Probab=99.92 E-value=5.6e-26 Score=150.86 Aligned_cols=68 Identities=35% Similarity=0.869 Sum_probs=66.1
Q ss_pred HHHHhcCCChHhHHHHHHhhCHHHHHhCcccchHHHhHhhhcccCCchhhHHHHHHHHHHHHHHhhhcc
Q 029947 111 YGLVVEGRSWSLVKNKVRKDYPSVQLTAWRFWPIVGWVNYQYIPLQFRVVFHSFVASCWAIFLNLKARS 179 (185)
Q Consensus 111 ~~~~l~g~s~~~~~~~~~~~~~~~~~~~~~~Wp~~~~inF~~vP~~~Rv~~~~~v~~~W~~yLS~~~~~ 179 (185)
|+ ++||+|++++++++|++++++++++|++|||+|++||.+||+++|++|+|+++++||+|||+++||
T Consensus 1 Mg-~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r 68 (68)
T PF04117_consen 1 MG-LLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR 68 (68)
T ss_pred CC-cccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence 46 899999999999999999999999999999999999999999999999999999999999999986
No 3
>PF10929 DUF2811: Protein of unknown function (DUF2811); InterPro: IPR021231 This is a bacterial family of uncharacterised proteins.
Probab=56.80 E-value=21 Score=22.56 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.3
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhc
Q 029947 35 SDAIAQKISGVKKLQLTRLLLLMFYGFAYG 64 (185)
Q Consensus 35 gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~ 64 (185)
-+.+.+.++..+.+|-.|.+..++-|+++.
T Consensus 11 ~~~m~~fie~hP~WDQ~Rl~~aALa~FL~Q 40 (57)
T PF10929_consen 11 HQAMKDFIETHPNWDQYRLFQAALAGFLLQ 40 (57)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHH
Confidence 355667777778999999999999999864
No 4
>PF03818 MadM: Malonate/sodium symporter MadM subunit; InterPro: IPR018402 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=44.42 E-value=65 Score=20.55 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=30.6
Q ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHhhhc
Q 029947 11 KYLIQLQVHPLRTKAITAGILAGCSDAIAQKISG 44 (185)
Q Consensus 11 ~Y~~~l~~~Pl~t~~~t~~~l~~~gD~~aQ~~~~ 44 (185)
...+.++++.++|.-..-|+++.++..++-++.+
T Consensus 3 ~i~~vl~~ngLitaFa~vG~~m~~S~~lS~~LT~ 36 (60)
T PF03818_consen 3 MIEKVLTKNGLITAFAVVGIIMWVSYWLSKKLTR 36 (60)
T ss_pred HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4567889999999999999999999999999886
No 5
>COG1284 Uncharacterized conserved protein [Function unknown]
Probab=37.54 E-value=1.9e+02 Score=24.30 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHHHHH--------------HHHHHhhhcCCcchHHHHHH-----HHHHHhhhccchhhhHHHHH
Q 029947 19 HPLRTKAITAGILAGCS--------------DAIAQKISGVKKLQLTRLLL-----LMFYGFAYGGPFGHFLHKLM 75 (185)
Q Consensus 19 ~Pl~t~~~t~~~l~~~g--------------D~~aQ~~~~~~~~D~~R~~~-----~~~~G~~~~gp~~~~wy~~L 75 (185)
++.+-.++.+|++.++| |++||.++++..++..++.- ..+.++++.+++-+..|..+
T Consensus 111 ~~~ll~aifgG~l~G~G~glv~r~ggStGGtdIlA~~l~kk~g~~iG~~ll~vd~~i~~~a~~~~~~~~~~lytli 186 (289)
T COG1284 111 IDPLLAALFGGLLLGIGLGLVFRHGGSTGGTDILALILNKKFGISVGKILLLVDGFILLIAALVFGPLPNALYTLL 186 (289)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 66777899999998876 99999999877777766532 12223333446666666433
No 6
>smart00337 BCL BCL (B-Cell lymphoma); contains BH1, BH2 regions. (BH1, BH2, (BH3 (one helix only)) and not BH4(one helix only)). Involved in apoptosis regulation
Probab=35.45 E-value=93 Score=21.52 Aligned_cols=31 Identities=16% Similarity=0.207 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhcCCcchHHHHHHHHHHHhhh
Q 029947 32 AGCSDAIAQKISGVKKLQLTRLLLLMFYGFAY 63 (185)
Q Consensus 32 ~~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~ 63 (185)
.....+..+.++ +..++|.|.+.+..||..+
T Consensus 32 ~~f~~Va~~lf~-dg~inWGRIval~~F~~~l 62 (100)
T smart00337 32 ELFGEVATELFS-DGNINWGRVVALLSFGGAL 62 (100)
T ss_pred HHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHH
Confidence 333444444443 3459999999999998864
No 7
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=33.58 E-value=2e+02 Score=23.42 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhccchhhhHH--HHHH--hH---ccCCCchHHHHHHHHHHhhhhhhHHHHHHH--HHHHHHhcCC--
Q 029947 50 LTRLLLLMFYGFAYGGPFGHFLH--KLMD--II---FKGKKDKKTVAKKVLLEQLTSSPWNNFLFM--MYYGLVVEGR-- 118 (185)
Q Consensus 50 ~~R~~~~~~~G~~~~gp~~~~wy--~~L~--~~---~~~~~~~~~~~~Kv~~Dq~v~~P~~~~~f~--~~~~~~l~g~-- 118 (185)
+||+...++...++.||..+.|. +-|. +. +|. .+....+.-++....+..+.+....+ ...+ ++-|+
T Consensus 4 ~r~~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l-~dP~~~lq~~~a~~~~~~~~~~~~~iv~~~~~-l~~GR~f 81 (255)
T TIGR02163 4 LRRLVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPL-SDPLITLQILLAGHSPPTNALIGALIIVAFYA-LFGGRAF 81 (255)
T ss_pred HHHHHHHHHHHHHHcchhhcceEEEecchHHHhcCCccC-cCHHHHHHHHHhcChhhHHHHHHHHHHHHHHH-HHhcccc
Confidence 68899999999988899887775 3332 22 233 45666777777777766666655543 2334 55665
Q ss_pred --------ChHhHHHHHHhhC
Q 029947 119 --------SWSLVKNKVRKDY 131 (185)
Q Consensus 119 --------s~~~~~~~~~~~~ 131 (185)
.+.|..++++++.
T Consensus 82 CgwiCP~g~~~el~~~l~~k~ 102 (255)
T TIGR02163 82 CSWVCPVNLVTDFAAWLRRKL 102 (255)
T ss_pred eeccCCchHHHHHHHHHHHhh
Confidence 2456655555443
No 8
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=30.27 E-value=26 Score=19.80 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhhCchHHH
Q 029947 7 EAWRKYLIQLQVHPLRTK 24 (185)
Q Consensus 7 ~~~~~Y~~~l~~~Pl~t~ 24 (185)
...+.|.+-..++|++|.
T Consensus 2 D~l~~Yl~ei~~~~LLt~ 19 (37)
T PF00140_consen 2 DSLRLYLKEIGRYPLLTA 19 (37)
T ss_dssp HHHHHHHHHHHHS-EETT
T ss_pred cHHHHHHHHHcCCCCCCH
Confidence 356789999999999874
No 9
>KOG0769 consensus Predicted mitochondrial carrier protein [Energy production and conversion]
Probab=29.26 E-value=1.4e+02 Score=25.12 Aligned_cols=71 Identities=15% Similarity=0.051 Sum_probs=37.8
Q ss_pred HHHHHHhhhcCCcchHHHHHHHHHHHhhhccchhhhHHHHHHhHccCCC------chHHH---HHHHHHHhhhhhhHHHH
Q 029947 35 SDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGKK------DKKTV---AKKVLLEQLTSSPWNNF 105 (185)
Q Consensus 35 gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~~------~~~~~---~~Kv~~Dq~v~~P~~~~ 105 (185)
.|++.|.+.++.-....|-+--.+.+.+++-.+-++||.++.+.--..+ ...+. +.-=.++++.-.|+...
T Consensus 47 ~dvm~eiik~eg~lsLYqGl~p~~~~t~iSnFVYFY~y~~~k~~~~~~~~s~s~~t~~~Lllga~AGsinvl~T~Plwvv 126 (308)
T KOG0769|consen 47 SDVMWEIIKEEGVLSLYQGLGPVLVSTFISNFVYFYTYSYFKAVASKGKLSQSSGTKADLLLGAAAGSINVLLTTPLWVV 126 (308)
T ss_pred HHHHHHHHhccchHHHhccccHHHHHHHHhhhHhhhhHHHHHHHHhcCCCcCCcchHHHHHHHHHHhhhHHHhcChHHHH
Confidence 3444444433223334444444555666666677899999977653321 11222 22234667777888654
No 10
>PF03988 DUF347: Repeat of Unknown Function (DUF347) ; InterPro: IPR007136 This repeat is found as four tandem repeats in a family of bacterial membrane proteins. Each repeat contains two transmembrane regions and a conserved tryptophan.
Probab=29.12 E-value=1.4e+02 Score=18.30 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccchhhhHH
Q 029947 21 LRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLH 72 (185)
Q Consensus 21 l~t~~~t~~~l~~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~gp~~~~wy 72 (185)
.+++.++..+-...||.++|. .+........+++..+.. ....||
T Consensus 4 W~a~ilt~~lGt~~~D~l~~~------lglg~~~~~~~~~~~l~~-~~~~~~ 48 (55)
T PF03988_consen 4 WIAKILTTTLGTTAGDFLSKT------LGLGYLISTLIFAALLAV-VLALWY 48 (55)
T ss_pred HHHHHHHHHhHHHHHHHHHhc------cCccHHHHHHHHHHHHHH-HHHHHH
Confidence 357888999999999999994 444455555555554333 333444
No 11
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=27.64 E-value=1.3e+02 Score=21.17 Aligned_cols=33 Identities=12% Similarity=0.062 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhccchhhhHH--HHHHhHccCC
Q 029947 50 LTRLLLLMFYGFAYGGPFGHFLH--KLMDIIFKGK 82 (185)
Q Consensus 50 ~~R~~~~~~~G~~~~gp~~~~wy--~~L~~~~~~~ 82 (185)
++....+++.|..+.+|+.-.-| .+||+.++++
T Consensus 39 ~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~ 73 (100)
T TIGR02230 39 WEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSP 73 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 44566688899988889887766 5999999973
No 12
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=25.79 E-value=1.4e+02 Score=25.61 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=35.2
Q ss_pred CchH--HHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccchhhh
Q 029947 19 HPLR--TKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHF 70 (185)
Q Consensus 19 ~Pl~--t~~~t~~~l~~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~gp~~~~ 70 (185)
+|++ .=++.+++++++++++.+.+.++.+. ..=...++++|.++.||....
T Consensus 165 ~~i~GDll~l~~a~lya~~nV~~E~~v~~~~~-~~~lg~~Glfg~ii~~iq~~i 217 (334)
T PF06027_consen 165 NPILGDLLALLGAILYAVSNVLEEKLVKKAPR-VEFLGMLGLFGFIISGIQLAI 217 (334)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHh
Confidence 4544 33678999999999998887763221 223577788888888876544
No 13
>PRK09609 hypothetical protein; Provisional
Probab=23.87 E-value=3.6e+02 Score=23.04 Aligned_cols=54 Identities=24% Similarity=0.225 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccchhhhHHHHHHhHccCC
Q 029947 27 TAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKLMDIIFKGK 82 (185)
Q Consensus 27 t~~~l~~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~gp~~~~wy~~L~~~~~~~ 82 (185)
.+++..+++|++.-.+.+ ..+.+.=++.-++.|.. .|-+..+.|+.+.+.|.++
T Consensus 58 ~G~ivG~lsDLLs~li~p-G~ffPgFTLsa~l~GlI-~Glf~~~~fk~~~~~f~~~ 111 (312)
T PRK09609 58 VGFFTGLLSDLISFLFVP-GVYHPYYTLAAMVYGFI-PGIVGWFFFKFGKKFFGKE 111 (312)
T ss_pred HHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHH
Confidence 467778899999977754 67889999988888885 7988888899999998863
No 14
>PF09734 Tau95: RNA polymerase III transcription factor (TF)IIIC subunit; InterPro: IPR019136 Transcription factor IIIC (TFIIIC) is a multisubunit DNA binding factor that serves as a dynamic platform for assembly of pre-initiation complexes on class III genes. This entry represents subunit 5 (also known as the tau 95 subunit) which holds a key position in TFIIIC, exerting both upstream and downstream influence on the TFIIIC-DNA complex by rendering the complex more stable []. Once bound to tDNA-intragenic promoter elements, TFIIIC directs the assembly of TFIIIB on the DNA, which in turn recruits the RNA polymerase III (pol III) and activates multiple rounds of transcription.
Probab=20.43 E-value=87 Score=26.26 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhhhccchhhhHHHH
Q 029947 3 DVAKEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISGVKKLQLTRLLLLMFYGFAYGGPFGHFLHKL 74 (185)
Q Consensus 3 ~~~~~~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~~gp~~~~wy~~ 74 (185)
.......+.-.+++++||+.|+-..-.-+-..+ .....++++....|-+. .||+-..|-++
T Consensus 231 ~~~~~~~~~l~~lFeeRPIW~r~~L~~~~~~~~----------~~~~~k~~l~~v~Y~f~-~GPwr~~~vr~ 291 (310)
T PF09734_consen 231 PVLQELIQELKKLFEERPIWTRRALLNHLPKSG----------SQSKLKRALPYVAYYFK-NGPWRDCWVRF 291 (310)
T ss_pred hhHHHHHHHHHHHHhcCCccCHHHHHHhhhhcc----------cHHHHHHHHHhhEEEEe-cCcccceeEec
Confidence 345667888899999999988765433322222 34567788888888885 99999888553
Done!