Query 029947
Match_columns 185
No_of_seqs 150 out of 1011
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 09:32:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vqc_A Hypothetical 13.2 kDa p 27.7 20 0.00069 23.9 1.0 26 33-58 31-57 (118)
2 1xrd_A LH-1, light-harvesting 22.4 86 0.0029 18.6 2.9 30 47-76 7-42 (52)
3 4aw6_A CAAX prenyl protease 1 18.6 3.6E+02 0.012 23.1 7.4 48 58-107 132-186 (482)
4 1p58_D Envelope protein M; fla 15.9 2.2E+02 0.0076 18.0 4.1 35 7-42 27-61 (75)
5 2kua_A BCL-2-like protein 10; 14.8 1.1E+02 0.0037 22.5 2.7 18 46-63 88-105 (170)
6 2ksd_A Aerobic respiration con 10.9 12 0.0004 26.2 -3.4 69 6-75 5-76 (115)
7 1m93_A Serine proteinase inhib 10.7 40 0.0014 19.8 -0.6 29 95-123 14-42 (55)
8 2qho_B E3 ubiquitin-protein li 10.7 1.5E+02 0.005 17.3 1.8 18 114-131 19-36 (53)
9 3ajf_A Non-structural protein 9.5 1.4E+02 0.0048 19.4 1.6 25 141-168 60-84 (94)
10 1rh5_B Preprotein translocase 9.0 2.1E+02 0.0071 18.1 2.3 25 49-73 33-57 (74)
No 1
>2vqc_A Hypothetical 13.2 kDa protein; winged-helix, crenarchaeal, DNA-binding protein, thermo protein, sulfolobus spindle virus; 2.3A {Sulfolobus virus-like particle SSV1} SCOP: a.4.5.78
Probab=27.72 E-value=20 Score=23.92 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=19.0
Q ss_pred HHHHHHHHhhh-cCCcchHHHHHHHHH
Q 029947 33 GCSDAIAQKIS-GVKKLQLTRLLLLMF 58 (185)
Q Consensus 33 ~~gD~~aQ~~~-~~~~~D~~R~~~~~~ 58 (185)
.+-|++||.-. ....++..|++++..
T Consensus 31 sledilaqfeis~~sayniqr~l~~ic 57 (118)
T 2vqc_A 31 TLEDILAQFEISVPSAYNIQRALKAIC 57 (118)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 46799999843 234688999998764
No 2
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=22.38 E-value=86 Score=18.55 Aligned_cols=30 Identities=10% Similarity=0.053 Sum_probs=20.1
Q ss_pred cchHHHHHHHHHHHhhhccchhhhH------HHHHH
Q 029947 47 KLQLTRLLLLMFYGFAYGGPFGHFL------HKLMD 76 (185)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gp~~~~w------y~~L~ 76 (185)
-+|++|++.-.....+..+-..|+- |++||
T Consensus 7 ~fDPrr~Lva~~~fl~vlAl~IHfilLSt~~fNWl~ 42 (52)
T 1xrd_A 7 LFDPRQALVGLATFLFVLALLIHFILLSTERFNWLE 42 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEchhHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Confidence 4799998766555555567777765 55665
No 3
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=18.57 E-value=3.6e+02 Score=23.11 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=30.6
Q ss_pred HHHhhhccchhhhHHH--HHHhHccCC-Cc----hHHHHHHHHHHhhhhhhHHHHHH
Q 029947 58 FYGFAYGGPFGHFLHK--LMDIIFKGK-KD----KKTVAKKVLLEQLTSSPWNNFLF 107 (185)
Q Consensus 58 ~~G~~~~gp~~~~wy~--~L~~~~~~~-~~----~~~~~~Kv~~Dq~v~~P~~~~~f 107 (185)
+++.+..=|+. +|+ .+|+.++-. .+ +.+.+|..++.+.+..|+....+
T Consensus 132 l~~~l~~LP~~--~Y~tfvle~~~Gfnk~t~~~f~~D~~k~~~l~~vi~~pl~~~~~ 186 (482)
T 4aw6_A 132 LFSALAGLPWS--LYNTFVIEEKHGFNQQTLGFFMKDAIKKFVVTQCILLPVSSLLL 186 (482)
T ss_dssp HHHHHHHHHHH--HHHHHTHHHHTTCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHH--HHHheeehhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444543 343 578887642 22 56788899999999999865444
No 4
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=15.86 E-value=2.2e+02 Score=17.97 Aligned_cols=35 Identities=11% Similarity=-0.030 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHhh
Q 029947 7 EAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKI 42 (185)
Q Consensus 7 ~~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~~aQ~~ 42 (185)
+=..+-+++.-|+|..+-++. .+.+.+|+-..|++
T Consensus 27 ~~l~kvE~WilrNp~~al~a~-~~~w~lG~~~~Qrv 61 (75)
T 1p58_D 27 KHAQRIETWILRHPGFTIMAA-ILAYTIGTTHFQRV 61 (75)
T ss_pred HHHHHHHHHHHHChHHHHHHH-HHHHHHcCChHHHH
Confidence 445666788889999888888 88889999888886
No 5
>2kua_A BCL-2-like protein 10; BOO, DIVA, apoptosis, BH3-only, membrane, mitochondri nucleus, transmembrane; NMR {Mus musculus}
Probab=14.75 E-value=1.1e+02 Score=22.46 Aligned_cols=18 Identities=11% Similarity=0.383 Sum_probs=14.7
Q ss_pred CcchHHHHHHHHHHHhhh
Q 029947 46 KKLQLTRLLLLMFYGFAY 63 (185)
Q Consensus 46 ~~~D~~R~~~~~~~G~~~ 63 (185)
..++|.|.+.+..||..+
T Consensus 88 g~iNWGRIVaLfaF~g~L 105 (170)
T 2kua_A 88 QDFSWSQLVMLLAFAGTL 105 (170)
T ss_dssp SCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 478999999988888764
No 6
>2ksd_A Aerobic respiration control sensor protein ARCB; methods development, histidine kinase receptor, membrane domain, two-helical hairpin; NMR {Escherichia coli}
Probab=10.90 E-value=12 Score=26.19 Aligned_cols=69 Identities=9% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHhhhc---CCcchHHHHHHHHHHHhhhccchhhhHHHHH
Q 029947 6 KEAWRKYLIQLQVHPLRTKAITAGILAGCSDAIAQKISG---VKKLQLTRLLLLMFYGFAYGGPFGHFLHKLM 75 (185)
Q Consensus 6 ~~~~~~Y~~~l~~~Pl~t~~~t~~~l~~~gD~~aQ~~~~---~~~~D~~R~~~~~~~G~~~~gp~~~~wy~~L 75 (185)
+.....|-++..|--...-++.+..+..+-+++.|.+-. .++.++.-..|..++|.+ .+|+.-+.+..+
T Consensus 5 k~~aq~yvd~v~rlG~~rfSlL~~~~l~v~A~~~q~~~~~~~~G~v~~~Di~rsI~Fgli-~aP~viYFls~v 76 (115)
T 2ksd_A 5 RLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTMVLHGQVESIDVIRSIFFGLL-ITPWAVYFLSVV 76 (115)
T ss_dssp ----------CCCSSTTSSCCSHHHHHHHHHHHHHHHHHHHSCCCSSSSSCCSTTTHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHhhhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 345567777777777777777788888888899998652 245666666666777885 789888877655
No 7
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=10.71 E-value=40 Score=19.81 Aligned_cols=29 Identities=14% Similarity=0.004 Sum_probs=16.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHhcCCChHhH
Q 029947 95 EQLTSSPWNNFLFMMYYGLVVEGRSWSLV 123 (185)
Q Consensus 95 Dq~v~~P~~~~~f~~~~~~~l~g~s~~~~ 123 (185)
++++++|+.+..-+.....-.+|.+.+++
T Consensus 14 ~Ni~~SP~Si~~aLaml~~GA~g~T~~ql 42 (55)
T 1m93_A 14 ENVFISPPSISSVLTILYYGANGSTAEQL 42 (55)
T ss_dssp SCEEECHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHHhhccchHHHHH
Confidence 36789999877655543311344444443
No 8
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=10.65 E-value=1.5e+02 Score=17.32 Aligned_cols=18 Identities=22% Similarity=0.518 Sum_probs=15.0
Q ss_pred HhcCCChHhHHHHHHhhC
Q 029947 114 VVEGRSWSLVKNKVRKDY 131 (185)
Q Consensus 114 ~l~g~s~~~~~~~~~~~~ 131 (185)
+++|+|.+-|..++++.=
T Consensus 19 VLqgksR~vIirELqrTn 36 (53)
T 2qho_B 19 VLQGKSRSVIIRELQRTN 36 (53)
T ss_dssp HSTTCCHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHhC
Confidence 789999998998888643
No 9
>3ajf_A Non-structural protein 3; RNA silencing suppression, negative strand RNA virus, viral; 2.00A {Rice hoja blanca virus}
Probab=9.49 E-value=1.4e+02 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.464 Sum_probs=18.1
Q ss_pred cchHHHhHhhhcccCCchhhHHHHHHHH
Q 029947 141 FWPIVGWVNYQYIPLQFRVVFHSFVASC 168 (185)
Q Consensus 141 ~Wp~~~~inF~~vP~~~Rv~~~~~v~~~ 168 (185)
+|....= +=.|.+||++...+++..
T Consensus 60 IWiLsHd---rdlP~~yRlP~t~lvS~y 84 (94)
T 3ajf_A 60 IWMLSHK---RDLPGHYRLPLTCLVSTY 84 (94)
T ss_dssp HHHHHTC---TTCCGGGHHHHHHHHHHH
T ss_pred HHHhhcC---CCCCccccccHHHHHHHH
Confidence 4555544 346999999999988753
No 10
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=8.96 E-value=2.1e+02 Score=18.06 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhhhccchhhhHHH
Q 029947 49 QLTRLLLLMFYGFAYGGPFGHFLHK 73 (185)
Q Consensus 49 D~~R~~~~~~~G~~~~gp~~~~wy~ 73 (185)
++.+.++....|+++.|-+.+.-+-
T Consensus 33 EF~~iak~~~iG~~imG~IGfiIkl 57 (74)
T 1rh5_B 33 EYLAVAKVTALGISLLGIIGYIIHV 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999998888766543
Done!