Query 029947
Match_columns 185
No_of_seqs 150 out of 1011
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 09:32:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029947.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/029947hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2vqca1 a.4.5.78 (A:4-73) F-11 42.9 4 0.00029 23.5 1.0 26 33-58 22-48 (70)
2 d1xrda1 f.3.1.1 (A:1-52) Light 27.7 28 0.0021 19.2 2.9 25 47-71 7-31 (52)
3 d2g7la2 a.121.1.1 (A:87-230) P 13.9 75 0.0055 20.1 3.4 48 4-52 6-58 (144)
4 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 13.6 1.7E+02 0.012 19.1 5.6 30 33-63 68-97 (146)
5 d1khda1 a.46.2.1 (A:12-80) Ant 13.5 1.1E+02 0.0081 16.9 5.7 54 71-127 2-58 (69)
6 d2v9va1 a.4.5.35 (A:377-437) C 12.5 64 0.0046 17.4 2.1 21 36-56 5-26 (61)
7 d2g7ga2 a.121.1.1 (A:74-205) P 10.5 1E+02 0.0074 19.0 3.1 48 4-52 6-58 (132)
8 d1k3xa1 a.156.1.2 (A:125-213) 9.4 23 0.0017 21.5 -0.7 19 87-105 27-45 (89)
9 d3ct6a1 c.54.1.2 (A:1-123) PTS 8.7 1.7E+02 0.013 18.4 3.7 32 98-130 88-119 (123)
10 d1z0xa2 a.121.1.1 (A:72-220) T 8.0 1.3E+02 0.0096 19.1 2.9 47 4-51 6-57 (149)
No 1
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle SSV1 [TaxId: 244589]}
Probab=42.86 E-value=4 Score=23.49 Aligned_cols=26 Identities=19% Similarity=0.074 Sum_probs=18.8
Q ss_pred HHHHHHHHhhh-cCCcchHHHHHHHHH
Q 029947 33 GCSDAIAQKIS-GVKKLQLTRLLLLMF 58 (185)
Q Consensus 33 ~~gD~~aQ~~~-~~~~~D~~R~~~~~~ 58 (185)
.+-|++||.-. ....++..|++++..
T Consensus 22 ~ledilaqfeis~~~ayniqr~l~~ic 48 (70)
T d2vqca1 22 TLEDILAQFEISVPSAYNIQRALKAIC 48 (70)
T ss_dssp CHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHheeccchHhHHHHHHHHHH
Confidence 46799999843 234688999998753
No 2
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=27.73 E-value=28 Score=19.18 Aligned_cols=25 Identities=12% Similarity=-0.010 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHHHhhhccchhhhH
Q 029947 47 KLQLTRLLLLMFYGFAYGGPFGHFL 71 (185)
Q Consensus 47 ~~D~~R~~~~~~~G~~~~gp~~~~w 71 (185)
-+|++|++.-.....+.-+-..|+-
T Consensus 7 ~fDPRr~lva~~~fL~~LAl~IHfi 31 (52)
T d1xrda1 7 LFDPRQALVGLATFLFVLALLIHFI 31 (52)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799998766655555566666664
No 3
>d2g7la2 a.121.1.1 (A:87-230) Putative transcriptional regulator SCO7704 {Streptomyces coelicolor [TaxId: 1902]}
Probab=13.90 E-value=75 Score=20.07 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHHHH-----HHHHHHHHHHHhhhcCCcchHHH
Q 029947 4 VAKEAWRKYLIQLQVHPLRTKAITAG-----ILAGCSDAIAQKISGVKKLQLTR 52 (185)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~~aQ~~~~~~~~D~~R 52 (185)
-++.+...|.+.+.+||.+...+.+. -.....|-+.+.+.+ ..++...
T Consensus 6 ~Lr~~a~~~r~~l~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~~ 58 (144)
T d2g7la2 6 QLRAVLTSYTLVLFAHPQLARSALVARPSGENYLRLVERVLELLAR-SGAPGAQ 58 (144)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHSCCCSHHHHHHHHHHHHHHHT-TCCCHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHhcCCCCcccHHHHHHHHHHHHHH-cCCCHHH
Confidence 46778899999999999988876543 233455666666654 3454443
No 4
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=13.59 E-value=1.7e+02 Score=19.11 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=20.8
Q ss_pred HHHHHHHHhhhcCCcchHHHHHHHHHHHhhh
Q 029947 33 GCSDAIAQKISGVKKLQLTRLLLLMFYGFAY 63 (185)
Q Consensus 33 ~~gD~~aQ~~~~~~~~D~~R~~~~~~~G~~~ 63 (185)
..+.++.+.++. ...+|.|...+..||..+
T Consensus 68 ~f~~V~~elF~D-G~~NWGRIVaLfaFg~~l 97 (146)
T d1k3ka_ 68 QLGLSMLQVSGD-GNMNWGRALAILTFGSFV 97 (146)
T ss_dssp HHHTHHHHHCSS-CSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHHH
Confidence 345555555543 457999999999998853
No 5
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}
Probab=13.51 E-value=1.1e+02 Score=16.91 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=35.1
Q ss_pred HHHHHHhHccCCCchHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHhcCCChHhHHHHH
Q 029947 71 LHKLMDIIFKGKKDKKTVAKKVLLEQLT---SSPWNNFLFMMYYGLVVEGRSWSLVKNKV 127 (185)
Q Consensus 71 wy~~L~~~~~~~~~~~~~~~Kv~~Dq~v---~~P~~~~~f~~~~~~~l~g~s~~~~~~~~ 127 (185)
|-..|+++..+ .++..-=.+-++|+.+ .++..++.|+..+. ..|.+.+|+..-.
T Consensus 2 ~~~il~kl~~g-~~Ls~ee~~~~~~~i~~g~~~d~qiaafL~al~--~kg~t~dEi~g~~ 58 (69)
T d1khda1 2 HQPILEKLFKS-QSMTQEESHQLFAAIVRGELEDSQLAAALISMK--MRGERPEEIAGAA 58 (69)
T ss_dssp CHHHHHHHHTT-CCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHH--HHCCCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HhCCCHHHHHHHH
Confidence 44567788776 3443333344555554 57888889988775 7899888776543
No 6
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=12.46 E-value=64 Score=17.45 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=14.8
Q ss_pred HHHHHhhh-cCCcchHHHHHHH
Q 029947 36 DAIAQKIS-GVKKLQLTRLLLL 56 (185)
Q Consensus 36 D~~aQ~~~-~~~~~D~~R~~~~ 56 (185)
.++||.+. .++.+||.....-
T Consensus 5 kilaqiiqehregldwqeaatr 26 (61)
T d2v9va1 5 KILAQIIQEHREGLDWQEAATR 26 (61)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHHHHHHHccCcHHHHHHH
Confidence 47889886 4578898865433
No 7
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=10.49 E-value=1e+02 Score=18.99 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHHHH-----HHHHHHHHHHHhhhcCCcchHHH
Q 029947 4 VAKEAWRKYLIQLQVHPLRTKAITAG-----ILAGCSDAIAQKISGVKKLQLTR 52 (185)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~t~~~t~~-----~l~~~gD~~aQ~~~~~~~~D~~R 52 (185)
-++.+...|.+.+.+||.+...+.+. .....-|-+.+.+.+ ..++...
T Consensus 6 ~lr~~a~~~r~~~~~HP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aG~~~~~ 58 (132)
T d2g7ga2 6 AFSEWARSYRAAFSRHPTAIRLLATETVRDPGSLSVYHSAAAGLRG-AGFPDDH 58 (132)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTSCCCCHHHHHHHHHHHHHHHH-HTCCHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhcCCCCChhHHHHHHHHHHHHHH-CCCCHHH
Confidence 46778899999999999988876653 234455555555543 3455443
No 8
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]}
Probab=9.36 E-value=23 Score=21.50 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=16.0
Q ss_pred HHHHHHHHHhhhhhhHHHH
Q 029947 87 TVAKKVLLEQLTSSPWNNF 105 (185)
Q Consensus 87 ~~~~Kv~~Dq~v~~P~~~~ 105 (185)
..++.+++||-+++-+.+.
T Consensus 27 ~~Ik~~LlDQ~~~aGIGN~ 45 (89)
T d1k3xa1 27 RQFAGLLLDQAFLAGLGNY 45 (89)
T ss_dssp SCHHHHTTCTTTSBTCCHH
T ss_pred chHHHHHhcCccccccCcH
Confidence 3588999999999999764
No 9
>d3ct6a1 c.54.1.2 (A:1-123) PTS-dependent dihydroxyacetone kinase, phosphotransferase subunit DhaM {Lactococcus lactis [TaxId: 1358]}
Probab=8.70 E-value=1.7e+02 Score=18.38 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=25.3
Q ss_pred hhhhHHHHHHHHHHHHHhcCCChHhHHHHHHhh
Q 029947 98 TSSPWNNFLFMMYYGLVVEGRSWSLVKNKVRKD 130 (185)
Q Consensus 98 v~~P~~~~~f~~~~~~~l~g~s~~~~~~~~~~~ 130 (185)
+-+|+.-..+-.... ...|.+++++.+++++-
T Consensus 88 i~~p~tegal~Aa~~-a~~g~~leeI~~~~~~~ 119 (123)
T d3ct6a1 88 FNVPLIEGAYTASAL-LEAGATFEAIKEQLEKM 119 (123)
T ss_dssp CCSCHHHHHHHHHHH-HHTTCCHHHHHHHHGGG
T ss_pred EcCchHHHHHHHHHH-HhCCCCHHHHHHHHHHh
Confidence 457777777777777 78999999999998764
No 10
>d1z0xa2 a.121.1.1 (A:72-220) Transcriptional regulator EF0787 {Enterococcus faecalis [TaxId: 1351]}
Probab=7.96 E-value=1.3e+02 Score=19.09 Aligned_cols=47 Identities=6% Similarity=-0.062 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHH-----HHHHHHHHHhhhcCCcchHH
Q 029947 4 VAKEAWRKYLIQLQVHPLRTKAITAGIL-----AGCSDAIAQKISGVKKLQLT 51 (185)
Q Consensus 4 ~~~~~~~~Y~~~l~~~Pl~t~~~t~~~l-----~~~gD~~aQ~~~~~~~~D~~ 51 (185)
-++.+...|.+.+.+||.+.....+... ...-|-+-+.+.+ ..++..
T Consensus 6 ~L~~~a~~~~~~~~~hP~~~~l~~~~~~~~p~~l~~~e~~l~~L~~-aGl~~~ 57 (149)
T d1z0xa2 6 DLLAFMENYYDLYQQFPCAVAIEIQTVPAYPQRLRHLNQMMGILRE-AGFSPE 57 (149)
T ss_dssp HHHHHHHHHHHHHHHSTTHHHHHHTSCCCSHHHHHHHHHHHHHHHH-TTCCHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHhhhccccchHHHHHHHHHHHHHHc-cCCCHH
Confidence 3567888999999999998887765422 2334444444543 344444
Done!