BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029948
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 192 bits (488), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 89/185 (48%), Positives = 121/185 (65%), Gaps = 2/185 (1%)
Query: 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSL 60
MG+ K HV+++PYP QGHI P+ +LAKLLH +GFH+TFVNTE+NH R ++++GP +
Sbjct: 1 MGNFANRKPHVVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAF 60
Query: 61 KGLPDFRFETIPDGLPP--SDRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVT 118
G DF FE+IPDGL P D D +QD+P LC S+RK L P+ ELL +LN + NVP VT
Sbjct: 61 DGFTDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVT 120
Query: 119 CVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPELVNRGIVPFEGTYDLSYNS 178
C+VSD M F +AA +P+V +++SAC L F V RGI+PF+ L+
Sbjct: 121 CLVSDCCMSFTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGC 180
Query: 179 LSIPI 183
L +
Sbjct: 181 LETKV 185
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 61/143 (42%), Gaps = 16/143 (11%)
Query: 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF---NHNRFIRNKGPDSLKGLPDF 66
HV VL +P H P++ L K + ++ VTF N F R S + LP+
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSR-----SNEFLPNI 69
Query: 67 RFETIPDGLPP---SDRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSD 123
++ + DGLP S + + + ++++ E + + +TC+V+D
Sbjct: 70 KYYNVHDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGK-----NITCLVTD 124
Query: 124 GIMGFGAKAARILGIPDVQLWTA 146
FGA A + V LWTA
Sbjct: 125 AFFWFGADLAEEMHAKWVPLWTA 147
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 19/89 (21%)
Query: 10 HVIVLPYPSQGHITPMMQLAK-LLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRF 68
HV ++P P GH+ P+++ AK L+H G VTFV I +GP P
Sbjct: 8 HVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFV---------IAGEGP------PSKAQ 52
Query: 69 ETIPDGLPPSDRDA---TQDLPALCSSIR 94
T+ D LP S DL L SS R
Sbjct: 53 RTVLDSLPSSISSVFLPPVDLTDLSSSTR 81
>pdb|4F91|B Chain B, Brr2 Helicase Region
Length = 1724
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 64/153 (41%), Gaps = 16/153 (10%)
Query: 37 FHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQD----LPALCSS 92
F V +++EF N +R + L+ L E +P + S + + L A S
Sbjct: 614 FRVFSLSSEFK-NITVREEEKLELQKL----LERVPIPVKESIEEPSAKINVLLQAFISQ 668
Query: 93 IRKTCLAPFLELLGKLNSAGNVPQV--TCVVSDGIMGFGAKAARILGIPDVQLWTASACG 150
++ A +++ SAG + + V++ G K + + D ++W S C
Sbjct: 669 LKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMW-QSMCP 727
Query: 151 FLAASQFPELVNRGI----VPFEGTYDLSYNSL 179
+ PE V + I PFE YDL++N +
Sbjct: 728 LRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEI 760
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 31.2 bits (69), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 10 HVIVLPYPSQGHITPMMQLAKLL--HSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFR 67
+I +P P GH+ ++ AKLL H K ++T +F F + L P +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 68 FETIPDGLPP 77
+P+ PP
Sbjct: 71 LIDLPEVEPP 80
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Complexed With Udp-Glucose
Length = 465
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Query: 10 HVIVLPYPSQGHITPMMQLAKLL--HSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFR 67
+I +P P GH+ ++ AKLL H K ++T +F F + L P +
Sbjct: 11 ELIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQIQ 70
Query: 68 FETIPDGLPP 77
+P+ PP
Sbjct: 71 LIDLPEVEPP 80
>pdb|2ZKR|CC Chain c, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 421
Score = 30.4 bits (67), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 81 DATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPD 140
+ TQ A+CS++ CL+ ++ K + VP++ VV D + G+ +L +
Sbjct: 116 NTTQKRYAICSAL--ACLSLPALVMSKGHRIEEVPELPLVVEDKVEGYKKTKEAVLLLKK 173
Query: 141 VQLWT 145
++ W
Sbjct: 174 LKAWN 178
>pdb|3K53|A Chain A, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|B Chain B, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|C Chain C, Crystal Structure Of Nfeob From P. Furiosus
pdb|3K53|D Chain D, Crystal Structure Of Nfeob From P. Furiosus
Length = 271
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 101 FLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQF 157
F L G GN P VT +GIM + K ++ +P + TA + L A F
Sbjct: 20 FNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNF 76
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 424
Score = 30.0 bits (66), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 3 SIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45
S VT +H+ P GH+ P + + + L ++G V++ T+
Sbjct: 7 SASVTPRHISFFNIPGHGHVNPSLGIVQELVARGHRVSYAITD 49
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 117 VTCVVSDGIMGFGAKAARILGIPDVQLWTA 146
V+C+V+D + F A A +G+ + WTA
Sbjct: 113 VSCLVADAFIWFAADMAAEMGVAWLPFWTA 142
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases:
A Blueprint For Antibiotic Engineering
Length = 430
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%), Gaps = 14/98 (14%)
Query: 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRN----------- 54
T H+ + + GH+ P +++ + L ++G VT+ ++
Sbjct: 5 TTPAHIAMFSIAAHGHVNPSLEVIRELVARGHRVTYAIPPVFADKVAATGPRPVLYHSTL 64
Query: 55 KGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSS 92
GPD+ P+ T+ D + P DA Q LP L +
Sbjct: 65 PGPDA---DPEAWGSTLLDNVEPFLNDAIQALPQLADA 99
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44
++H++ GH+ P + L L +G +T+V T
Sbjct: 4 QRHILFANVQGHGHVYPSLGLVSELARRGHRITYVTT 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,775,676
Number of Sequences: 62578
Number of extensions: 232852
Number of successful extensions: 414
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 14
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)