Query 029948
Match_columns 185
No_of_seqs 112 out of 1097
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 06:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029948.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029948hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02173 UDP-glucosyl transfer 99.9 1.1E-23 2.5E-28 179.8 17.2 142 6-156 3-144 (449)
2 PLN02410 UDP-glucoronosyl/UDP- 99.9 2.5E-23 5.5E-28 178.1 18.4 152 1-164 1-153 (451)
3 PLN02562 UDP-glycosyltransfera 99.9 4.5E-23 9.7E-28 176.6 19.2 147 8-165 6-152 (448)
4 PLN02555 limonoid glucosyltran 99.9 2.8E-23 6.1E-28 178.7 18.0 154 1-158 1-158 (480)
5 PLN02448 UDP-glycosyltransfera 99.9 6.5E-23 1.4E-27 176.2 17.9 152 2-165 4-157 (459)
6 PLN02210 UDP-glucosyl transfer 99.9 1.5E-22 3.2E-27 173.7 17.0 143 1-158 1-145 (456)
7 PLN02152 indole-3-acetate beta 99.9 2.3E-22 5E-27 172.1 17.6 145 8-159 3-149 (455)
8 PLN02863 UDP-glucoronosyl/UDP- 99.9 1.9E-22 4.1E-27 173.8 17.1 148 1-159 1-157 (477)
9 PLN02670 transferase, transfer 99.9 3.8E-22 8.2E-27 171.4 17.3 146 8-165 6-159 (472)
10 PLN02554 UDP-glycosyltransfera 99.9 1.7E-21 3.7E-26 168.3 15.7 150 8-163 2-159 (481)
11 PLN02534 UDP-glycosyltransfera 99.9 2.7E-21 5.9E-26 166.8 16.5 144 7-157 7-160 (491)
12 PLN02992 coniferyl-alcohol glu 99.9 4E-21 8.6E-26 165.3 16.4 141 7-161 4-149 (481)
13 PLN00164 glucosyltransferase; 99.9 5.4E-21 1.2E-25 165.0 16.1 146 7-161 2-155 (480)
14 PLN02207 UDP-glycosyltransfera 99.9 6.2E-21 1.3E-25 163.7 16.2 152 8-161 3-160 (468)
15 PLN00414 glycosyltransferase f 99.9 7.2E-21 1.6E-25 162.8 15.2 135 8-156 4-146 (446)
16 PLN03004 UDP-glycosyltransfera 99.9 1.7E-20 3.7E-25 160.5 16.7 149 8-160 3-156 (451)
17 PLN03007 UDP-glucosyltransfera 99.9 1.5E-20 3.2E-25 162.5 15.6 144 7-158 4-164 (482)
18 PLN03015 UDP-glucosyl transfer 99.9 3E-20 6.4E-25 159.3 16.9 148 8-161 3-153 (470)
19 PLN02208 glycosyltransferase f 99.8 2.9E-20 6.3E-25 158.9 15.1 137 7-158 3-147 (442)
20 PLN02167 UDP-glycosyltransfera 99.8 4.4E-20 9.5E-25 159.3 16.1 153 7-160 2-162 (475)
21 PLN02764 glycosyltransferase f 99.8 8.2E-20 1.8E-24 156.1 16.5 137 8-156 5-147 (453)
22 cd03784 GT1_Gtf_like This fami 99.7 2.2E-16 4.7E-21 133.1 9.1 126 9-148 1-136 (401)
23 TIGR01426 MGT glycosyltransfer 99.6 7.6E-15 1.6E-19 123.7 11.0 120 14-147 1-123 (392)
24 PF03033 Glyco_transf_28: Glyc 99.3 1.2E-13 2.6E-18 100.1 -0.0 126 11-149 1-133 (139)
25 KOG1192 UDP-glucuronosyl and U 99.1 7.5E-11 1.6E-15 102.1 4.9 149 8-158 5-157 (496)
26 PHA03392 egt ecdysteroid UDP-g 99.1 2.3E-09 5E-14 93.6 12.1 129 8-149 20-170 (507)
27 PF00201 UDPGT: UDP-glucoronos 98.9 3.1E-11 6.7E-16 104.8 -5.5 125 9-146 1-149 (500)
28 COG1819 Glycosyl transferases, 98.7 2.8E-08 6E-13 84.6 6.8 45 8-52 1-45 (406)
29 PF13528 Glyco_trans_1_3: Glyc 98.7 3.2E-07 6.9E-12 75.0 12.0 122 9-149 1-126 (318)
30 TIGR00661 MJ1255 conserved hyp 98.5 1.2E-06 2.5E-11 72.2 10.9 120 10-147 1-123 (321)
31 PRK12446 undecaprenyldiphospho 98.2 5.6E-05 1.2E-09 63.3 13.2 117 10-148 3-125 (352)
32 COG0707 MurG UDP-N-acetylgluco 97.9 0.00018 3.9E-09 60.4 12.0 123 9-149 1-126 (357)
33 TIGR01133 murG undecaprenyldip 97.8 0.00084 1.8E-08 55.2 12.9 115 9-143 1-119 (348)
34 cd03785 GT1_MurG MurG is an N- 97.7 0.0007 1.5E-08 55.7 11.7 113 10-144 1-119 (350)
35 TIGR00215 lpxB lipid-A-disacch 97.6 0.00088 1.9E-08 56.7 10.3 37 9-46 6-42 (385)
36 PRK00726 murG undecaprenyldiph 97.5 0.0031 6.7E-08 52.3 13.0 115 9-143 2-120 (357)
37 cd03818 GT1_ExpC_like This fam 97.1 0.018 3.9E-07 48.5 13.2 115 10-144 1-116 (396)
38 PRK00025 lpxB lipid-A-disaccha 97.0 0.0081 1.7E-07 50.2 10.1 37 9-46 2-38 (380)
39 cd03816 GT1_ALG1_like This fam 96.2 0.14 3E-06 43.6 12.6 39 8-46 3-41 (415)
40 PRK10307 putative glycosyl tra 96.1 0.11 2.4E-06 43.9 11.3 38 9-46 1-42 (412)
41 cd03823 GT1_ExpE7_like This fa 96.0 0.11 2.5E-06 41.7 10.8 29 19-47 15-43 (359)
42 PF12000 Glyco_trans_4_3: Gkyc 95.9 0.12 2.5E-06 39.1 9.3 95 34-145 1-96 (171)
43 PF13579 Glyco_trans_4_4: Glyc 95.8 0.016 3.4E-07 41.4 4.3 98 24-146 6-105 (160)
44 TIGR03590 PseG pseudaminic aci 95.7 0.17 3.7E-06 41.0 10.3 33 16-48 11-43 (279)
45 COG4671 Predicted glycosyl tra 95.6 0.1 2.3E-06 43.6 8.8 57 8-73 9-69 (400)
46 PF04007 DUF354: Protein of un 95.5 0.52 1.1E-05 39.3 12.6 105 20-150 11-116 (335)
47 PF13477 Glyco_trans_4_2: Glyc 95.4 0.38 8.2E-06 34.0 10.3 103 10-145 1-107 (139)
48 cd03794 GT1_wbuB_like This fam 95.2 0.32 7E-06 39.2 10.7 38 10-47 1-42 (394)
49 cd03808 GT1_cap1E_like This fa 95.1 0.54 1.2E-05 37.4 11.5 39 10-48 1-39 (359)
50 cd03800 GT1_Sucrose_synthase T 95.0 0.25 5.4E-06 40.9 9.4 28 19-46 21-48 (398)
51 cd03805 GT1_ALG2_like This fam 94.6 0.88 1.9E-05 37.8 12.0 37 9-45 1-39 (392)
52 cd03802 GT1_AviGT4_like This f 94.1 0.62 1.3E-05 37.5 9.6 38 9-46 1-46 (335)
53 TIGR02470 sucr_synth sucrose s 93.9 2.1 4.6E-05 39.8 13.6 126 9-143 256-414 (784)
54 PLN00142 sucrose synthase 93.9 0.74 1.6E-05 42.8 10.6 31 115-145 407-439 (815)
55 cd03796 GT1_PIG-A_like This fa 93.3 1.1 2.5E-05 37.6 10.2 26 20-45 15-40 (398)
56 TIGR03449 mycothiol_MshA UDP-N 93.0 2 4.3E-05 36.0 11.2 29 18-46 19-47 (405)
57 TIGR02468 sucrsPsyn_pln sucros 92.6 2.4 5.2E-05 40.6 12.0 26 20-45 196-223 (1050)
58 cd04962 GT1_like_5 This family 92.5 0.16 3.4E-06 41.7 3.9 38 9-46 1-39 (371)
59 TIGR02472 sucr_P_syn_N sucrose 92.5 1.5 3.3E-05 37.6 10.0 114 20-144 27-144 (439)
60 PRK13609 diacylglycerol glucos 92.3 0.19 4.1E-06 42.0 4.1 38 8-45 4-42 (380)
61 cd03819 GT1_WavL_like This fam 91.9 3.4 7.5E-05 33.4 11.0 98 19-145 10-109 (355)
62 cd03814 GT1_like_2 This family 90.7 0.45 9.7E-06 38.4 4.7 29 19-47 14-42 (364)
63 PLN02871 UDP-sulfoquinovose:DA 90.0 0.64 1.4E-05 40.2 5.2 41 6-46 56-101 (465)
64 cd03820 GT1_amsD_like This fam 89.4 4.4 9.6E-05 31.9 9.5 30 18-47 12-41 (348)
65 PRK05749 3-deoxy-D-manno-octul 89.4 2.7 5.8E-05 35.8 8.5 100 9-145 50-155 (425)
66 cd02067 B12-binding B12 bindin 89.3 0.87 1.9E-05 31.7 4.6 39 10-48 1-39 (119)
67 PLN02275 transferase, transfer 89.2 12 0.00026 31.2 14.2 38 9-46 5-43 (371)
68 cd03825 GT1_wcfI_like This fam 89.0 0.66 1.4E-05 37.7 4.4 39 9-47 1-41 (365)
69 PRK02261 methylaspartate mutas 89.0 1.2 2.6E-05 32.2 5.2 48 7-54 2-49 (137)
70 cd04951 GT1_WbdM_like This fam 88.4 0.54 1.2E-05 38.2 3.5 36 11-46 2-39 (360)
71 COG1817 Uncharacterized protei 88.4 8.4 0.00018 32.0 10.1 106 19-150 10-117 (346)
72 PF13439 Glyco_transf_4: Glyco 88.1 0.63 1.4E-05 33.5 3.4 28 20-47 13-40 (177)
73 cd03817 GT1_UGDG_like This fam 87.6 1 2.2E-05 36.2 4.7 31 17-47 12-42 (374)
74 PRK00654 glgA glycogen synthas 87.4 0.93 2E-05 39.3 4.5 37 9-45 1-43 (466)
75 PF02441 Flavoprotein: Flavopr 86.1 1.1 2.3E-05 31.9 3.5 42 9-51 1-42 (129)
76 PF08660 Alg14: Oligosaccharid 86.0 5.1 0.00011 30.0 7.3 31 12-43 2-33 (170)
77 cd03821 GT1_Bme6_like This fam 85.7 1.4 3E-05 35.4 4.5 30 18-47 13-42 (375)
78 COG3980 spsG Spore coat polysa 85.4 1.7 3.8E-05 35.4 4.7 41 9-49 1-45 (318)
79 PF02951 GSH-S_N: Prokaryotic 85.1 1.8 3.8E-05 30.7 4.1 39 9-47 1-42 (119)
80 PLN02846 digalactosyldiacylgly 85.0 1.5 3.3E-05 38.3 4.5 40 7-46 3-47 (462)
81 TIGR02095 glgA glycogen/starch 84.2 1.8 3.9E-05 37.4 4.7 37 9-45 1-43 (473)
82 cd03811 GT1_WabH_like This fam 82.4 2.4 5.2E-05 33.5 4.5 38 10-47 1-40 (353)
83 PRK10916 ADP-heptose:LPS hepto 82.4 23 0.00049 29.3 10.4 43 9-51 1-45 (348)
84 cd00561 CobA_CobO_BtuR ATP:cor 82.3 18 0.00039 26.9 10.5 34 9-42 3-36 (159)
85 cd02070 corrinoid_protein_B12- 81.9 4.1 8.9E-05 31.3 5.4 45 7-51 81-125 (201)
86 TIGR02370 pyl_corrinoid methyl 81.3 4.4 9.6E-05 31.1 5.4 47 7-53 83-129 (197)
87 PRK01021 lpxB lipid-A-disaccha 81.1 15 0.00033 33.2 9.3 48 99-150 297-349 (608)
88 COG1519 KdtA 3-deoxy-D-manno-o 80.7 23 0.00049 30.6 9.8 101 9-145 49-154 (419)
89 cd03791 GT1_Glycogen_synthase_ 79.3 3.1 6.8E-05 35.8 4.4 26 20-45 17-42 (476)
90 cd03801 GT1_YqgM_like This fam 79.2 3.8 8.2E-05 32.4 4.6 30 19-48 14-43 (374)
91 cd01635 Glycosyltransferase_GT 78.9 3.5 7.5E-05 30.7 4.1 26 18-43 12-37 (229)
92 COG1797 CobB Cobyrinic acid a, 78.7 19 0.0004 31.3 8.7 104 15-150 8-124 (451)
93 cd03795 GT1_like_4 This family 78.5 3.8 8.3E-05 33.1 4.5 30 18-47 13-42 (357)
94 COG1703 ArgK Putative periplas 78.5 5.3 0.00011 33.0 5.1 43 7-49 50-92 (323)
95 PF02310 B12-binding: B12 bind 78.5 6 0.00013 27.2 4.9 37 10-46 2-38 (121)
96 cd02071 MM_CoA_mut_B12_BD meth 78.1 5.3 0.00012 28.0 4.6 42 10-51 1-42 (122)
97 cd04955 GT1_like_6 This family 78.1 3.6 7.8E-05 33.3 4.3 28 20-47 16-43 (363)
98 cd01425 RPS2 Ribosomal protein 77.8 5.8 0.00013 30.3 5.0 34 115-148 126-161 (193)
99 cd03806 GT1_ALG11_like This fa 77.5 32 0.0007 29.3 10.1 32 116-147 107-139 (419)
100 cd02069 methionine_synthase_B1 77.0 6.5 0.00014 30.6 5.2 47 7-53 87-133 (213)
101 COG2910 Putative NADH-flavin r 75.2 3.8 8.2E-05 31.5 3.2 33 9-46 1-34 (211)
102 cd03786 GT1_UDP-GlcNAc_2-Epime 74.1 19 0.00042 29.5 7.6 33 14-46 4-37 (363)
103 PRK11519 tyrosine kinase; Prov 73.2 79 0.0017 29.3 15.6 39 8-46 525-565 (719)
104 COG0052 RpsB Ribosomal protein 72.8 7.1 0.00015 31.2 4.4 33 116-148 156-190 (252)
105 PF04413 Glycos_transf_N: 3-De 70.6 18 0.00039 27.4 6.2 103 10-147 22-128 (186)
106 TIGR01005 eps_transp_fam exopo 70.5 90 0.002 28.9 11.8 39 8-46 545-585 (754)
107 TIGR02195 heptsyl_trn_II lipop 70.2 50 0.0011 27.0 9.2 42 10-51 1-44 (334)
108 PLN02316 synthase/transferase 70.2 11 0.00023 36.4 5.7 41 6-46 585-631 (1036)
109 PRK14089 ipid-A-disaccharide s 70.1 7.5 0.00016 32.6 4.3 36 115-150 75-115 (347)
110 cd03812 GT1_CapH_like This fam 70.0 5.2 0.00011 32.4 3.3 37 11-47 2-40 (358)
111 cd03799 GT1_amsK_like This is 69.9 10 0.00022 30.5 5.0 37 11-47 2-39 (355)
112 PRK08305 spoVFB dipicolinate s 68.7 7.3 0.00016 30.0 3.6 40 9-49 6-46 (196)
113 PRK12311 rpsB 30S ribosomal pr 68.6 4.2 9E-05 33.9 2.4 33 115-147 151-185 (326)
114 TIGR00236 wecB UDP-N-acetylglu 68.5 57 0.0012 26.9 9.3 110 10-143 2-116 (365)
115 COG2185 Sbm Methylmalonyl-CoA 68.4 12 0.00026 27.3 4.5 45 7-51 11-55 (143)
116 COG1484 DnaC DNA replication p 67.3 10 0.00022 30.3 4.3 46 8-53 105-150 (254)
117 PF02374 ArsA_ATPase: Anion-tr 66.3 10 0.00022 31.2 4.3 40 9-48 1-41 (305)
118 PF02684 LpxB: Lipid-A-disacch 65.8 22 0.00047 30.3 6.2 47 100-150 70-121 (373)
119 PRK07313 phosphopantothenoylcy 65.8 8.2 0.00018 29.3 3.4 42 9-51 2-43 (182)
120 TIGR01012 Sa_S2_E_A ribosomal 65.7 8.9 0.00019 29.6 3.5 33 115-147 107-141 (196)
121 cd03822 GT1_ecORF704_like This 65.4 10 0.00022 30.4 4.2 38 10-47 1-41 (366)
122 PRK14099 glycogen synthase; Pr 64.6 14 0.0003 32.4 5.0 38 8-45 3-46 (485)
123 cd05844 GT1_like_7 Glycosyltra 64.6 74 0.0016 25.7 9.9 29 115-143 81-111 (367)
124 PF01975 SurE: Survival protei 64.6 16 0.00034 28.1 4.7 39 10-49 2-40 (196)
125 PF07894 DUF1669: Protein of u 63.9 11 0.00024 30.8 3.9 46 99-146 133-183 (284)
126 PF12146 Hydrolase_4: Putative 63.3 25 0.00053 22.7 4.9 34 9-42 16-49 (79)
127 PRK04020 rps2P 30S ribosomal p 63.1 10 0.00022 29.5 3.4 31 116-146 114-146 (204)
128 TIGR02852 spore_dpaB dipicolin 62.8 9.7 0.00021 29.1 3.3 39 10-48 2-40 (187)
129 TIGR03568 NeuC_NnaA UDP-N-acet 62.7 32 0.0007 28.8 6.7 117 10-146 2-126 (365)
130 PF01210 NAD_Gly3P_dh_N: NAD-d 62.5 6.5 0.00014 28.8 2.2 21 26-46 12-32 (157)
131 PF08323 Glyco_transf_5: Starc 62.5 6.7 0.00014 31.0 2.5 25 22-46 19-43 (245)
132 TIGR00421 ubiX_pad polyprenyl 62.3 9 0.00019 29.0 3.0 40 11-51 2-41 (181)
133 PF09314 DUF1972: Domain of un 62.1 14 0.00029 28.3 3.9 42 23-72 21-62 (185)
134 PRK05299 rpsB 30S ribosomal pr 61.8 12 0.00027 30.0 3.9 33 115-147 156-190 (258)
135 PRK06732 phosphopantothenate-- 61.3 11 0.00025 29.5 3.6 19 26-44 30-48 (229)
136 PRK14098 glycogen synthase; Pr 61.0 18 0.00039 31.7 5.1 39 7-45 4-48 (489)
137 PF04127 DFP: DNA / pantothena 60.7 9.9 0.00021 28.9 3.0 38 9-46 4-53 (185)
138 cd03798 GT1_wlbH_like This fam 59.3 16 0.00035 28.9 4.2 31 18-48 13-43 (377)
139 COG2894 MinD Septum formation 59.2 20 0.00044 28.5 4.5 36 10-45 3-40 (272)
140 CHL00067 rps2 ribosomal protei 58.6 18 0.00039 28.5 4.2 35 115-149 160-196 (230)
141 PTZ00254 40S ribosomal protein 58.3 15 0.00032 29.5 3.7 30 116-145 118-149 (249)
142 TIGR02113 coaC_strep phosphopa 58.2 16 0.00034 27.6 3.7 41 10-51 2-42 (177)
143 COG4088 Predicted nucleotide k 57.5 14 0.00031 29.1 3.4 34 11-44 3-37 (261)
144 TIGR01011 rpsB_bact ribosomal 57.5 14 0.00031 29.0 3.5 34 115-148 154-189 (225)
145 PRK06249 2-dehydropantoate 2-r 57.1 16 0.00035 29.9 3.9 34 8-46 5-38 (313)
146 PF01555 N6_N4_Mtase: DNA meth 56.9 16 0.00034 27.7 3.6 44 100-149 180-225 (231)
147 PRK05986 cob(I)alamin adenolsy 56.8 27 0.00059 26.8 4.8 36 7-42 21-56 (191)
148 TIGR03492 conserved hypothetic 56.3 1.3E+02 0.0027 25.7 10.5 28 20-47 8-40 (396)
149 cd03807 GT1_WbnK_like This fam 56.2 22 0.00047 28.2 4.5 30 17-46 10-39 (365)
150 PRK10964 ADP-heptose:LPS hepto 55.8 17 0.00037 29.7 3.9 43 9-51 1-45 (322)
151 COG0162 TyrS Tyrosyl-tRNA synt 55.3 14 0.0003 31.8 3.2 39 8-47 34-75 (401)
152 PF10087 DUF2325: Uncharacteri 55.1 39 0.00085 22.5 4.9 36 116-151 48-89 (97)
153 KOG2941 Beta-1,4-mannosyltrans 55.0 67 0.0015 27.4 7.1 59 6-73 10-70 (444)
154 cd02065 B12-binding_like B12 b 54.7 34 0.00074 23.3 4.8 39 11-49 2-40 (125)
155 PF04244 DPRP: Deoxyribodipyri 54.6 14 0.00031 29.0 3.1 25 21-45 47-71 (224)
156 PRK12342 hypothetical protein; 54.1 27 0.0006 28.0 4.6 31 116-146 109-145 (254)
157 PRK05920 aromatic acid decarbo 53.8 24 0.00052 27.4 4.1 42 9-51 4-45 (204)
158 PF06506 PrpR_N: Propionate ca 53.4 45 0.00098 24.8 5.6 117 20-153 17-159 (176)
159 PLN02939 transferase, transfer 53.1 28 0.00061 33.4 5.1 40 6-45 479-524 (977)
160 PRK06849 hypothetical protein; 52.7 33 0.00072 28.9 5.2 36 7-46 3-38 (389)
161 TIGR01007 eps_fam capsular exo 52.6 36 0.00079 25.7 5.0 36 9-44 17-54 (204)
162 PF00070 Pyr_redox: Pyridine n 52.4 24 0.00052 22.3 3.4 23 24-46 10-32 (80)
163 PRK09841 cryptic autophosphory 52.1 2E+02 0.0043 26.7 15.3 38 8-45 530-569 (726)
164 cd01018 ZntC Metal binding pro 51.4 85 0.0018 25.0 7.2 51 100-154 205-257 (266)
165 PRK00945 acetyl-CoA decarbonyl 50.8 41 0.00088 25.4 4.8 30 115-145 35-71 (171)
166 PRK13604 luxD acyl transferase 49.8 44 0.00095 27.6 5.3 35 8-42 36-70 (307)
167 PRK09444 pntB pyridine nucleot 49.7 25 0.00055 30.6 4.0 38 9-46 307-347 (462)
168 PF13450 NAD_binding_8: NAD(P) 49.5 25 0.00053 21.8 3.0 18 26-43 9-26 (68)
169 cd00550 ArsA_ATPase Oxyanion-t 49.4 28 0.00061 27.6 4.1 37 11-47 2-39 (254)
170 PRK03359 putative electron tra 49.3 35 0.00077 27.4 4.6 32 116-147 112-149 (256)
171 PRK10422 lipopolysaccharide co 49.1 34 0.00075 28.3 4.7 44 8-51 5-50 (352)
172 TIGR00347 bioD dethiobiotin sy 49.0 60 0.0013 23.5 5.6 28 15-42 5-32 (166)
173 PF03308 ArgK: ArgK protein; 48.9 41 0.00088 27.3 4.8 43 7-49 28-70 (266)
174 PF10727 Rossmann-like: Rossma 48.9 37 0.0008 24.2 4.2 42 1-47 1-44 (127)
175 PF00205 TPP_enzyme_M: Thiamin 48.9 31 0.00068 24.3 3.9 39 103-145 3-47 (137)
176 PRK06522 2-dehydropantoate 2-r 48.3 22 0.00047 28.5 3.3 31 9-44 1-31 (304)
177 TIGR02193 heptsyl_trn_I lipopo 48.1 24 0.00053 28.6 3.6 42 10-51 1-44 (319)
178 COG0003 ArsA Predicted ATPase 47.7 42 0.0009 28.0 4.9 39 9-47 2-41 (322)
179 PRK06029 3-octaprenyl-4-hydrox 47.5 26 0.00056 26.7 3.4 41 10-51 3-44 (185)
180 cd02032 Bchl_like This family 47.3 41 0.00088 26.6 4.7 36 9-44 1-36 (267)
181 cd01452 VWA_26S_proteasome_sub 46.8 66 0.0014 24.5 5.5 37 9-45 108-145 (187)
182 COG0503 Apt Adenine/guanine ph 46.8 47 0.001 25.0 4.7 29 115-143 52-82 (179)
183 TIGR02699 archaeo_AfpA archaeo 46.6 31 0.00067 26.0 3.7 30 20-49 10-41 (174)
184 PF06415 iPGM_N: BPG-independe 46.4 52 0.0011 25.9 5.0 40 6-45 27-71 (223)
185 cd01421 IMPCH Inosine monophos 46.1 1.3E+02 0.0028 23.0 7.0 27 23-51 11-37 (187)
186 CHL00072 chlL photochlorophyll 46.0 48 0.001 26.9 5.0 37 9-45 1-37 (290)
187 PF08026 Antimicrobial_5: Bee 45.9 2.7 5.9E-05 22.9 -1.5 24 13-36 15-38 (39)
188 TIGR01281 DPOR_bchL light-inde 45.9 45 0.00098 26.4 4.8 34 9-42 1-34 (268)
189 PF07015 VirC1: VirC1 protein; 45.9 54 0.0012 26.0 5.0 38 12-49 5-43 (231)
190 TIGR02845 spore_V_AD stage V s 45.6 1E+02 0.0022 25.8 6.8 52 116-167 71-125 (327)
191 PRK13789 phosphoribosylamine-- 45.5 1.2E+02 0.0026 26.2 7.6 36 7-47 3-38 (426)
192 PRK09219 xanthine phosphoribos 44.8 52 0.0011 25.1 4.7 32 115-146 49-82 (189)
193 TIGR01501 MthylAspMutase methy 44.4 63 0.0014 23.2 4.8 46 9-54 2-47 (134)
194 PF07302 AroM: AroM protein; 44.4 54 0.0012 25.8 4.8 47 100-150 166-215 (221)
195 PF00318 Ribosomal_S2: Ribosom 44.3 29 0.00064 26.9 3.3 34 115-148 142-177 (211)
196 PRK08304 stage V sporulation p 44.1 1E+02 0.0022 26.0 6.5 66 98-165 61-129 (337)
197 cd01141 TroA_d Periplasmic bin 44.0 35 0.00075 25.2 3.6 39 99-145 60-100 (186)
198 PLN02891 IMP cyclohydrolase 43.9 87 0.0019 28.0 6.4 45 21-77 31-77 (547)
199 PLN00016 RNA-binding protein; 43.9 35 0.00076 28.5 4.0 36 8-45 52-89 (378)
200 PRK13982 bifunctional SbtC-lik 43.8 37 0.00079 29.9 4.1 39 8-46 256-306 (475)
201 COG0299 PurN Folate-dependent 43.8 71 0.0015 24.7 5.2 49 100-148 13-61 (200)
202 PF02702 KdpD: Osmosensitive K 43.6 50 0.0011 25.7 4.4 40 6-45 3-42 (211)
203 cd03789 GT1_LPS_heptosyltransf 43.4 35 0.00076 27.1 3.8 41 10-50 1-43 (279)
204 PRK09620 hypothetical protein; 43.1 28 0.00061 27.3 3.1 37 9-45 4-52 (229)
205 TIGR00521 coaBC_dfp phosphopan 43.0 38 0.00081 29.0 4.0 42 8-50 3-44 (390)
206 cd01983 Fer4_NifH The Fer4_Nif 43.0 77 0.0017 19.8 4.9 33 11-43 2-34 (99)
207 TIGR00234 tyrS tyrosyl-tRNA sy 42.9 23 0.00049 30.1 2.7 37 9-46 33-72 (377)
208 PF03721 UDPG_MGDP_dh_N: UDP-g 42.9 44 0.00095 25.2 4.1 33 9-46 1-33 (185)
209 PRK08277 D-mannonate oxidoredu 42.8 58 0.0013 25.6 5.0 34 8-44 9-42 (278)
210 PRK00090 bioD dithiobiotin syn 42.6 1.5E+02 0.0033 22.5 7.3 29 15-43 7-35 (222)
211 PRK12921 2-dehydropantoate 2-r 42.5 31 0.00067 27.8 3.4 32 9-45 1-32 (305)
212 PF06925 MGDG_synth: Monogalac 42.5 70 0.0015 23.4 5.1 42 98-146 78-125 (169)
213 TIGR03026 NDP-sugDHase nucleot 42.4 41 0.00089 28.7 4.2 31 9-44 1-31 (411)
214 PF02233 PNTB: NAD(P) transhyd 42.2 31 0.00066 30.3 3.4 38 9-46 308-348 (463)
215 PF10657 RC-P840_PscD: Photosy 42.2 44 0.00096 23.7 3.6 41 6-46 44-84 (144)
216 PRK04940 hypothetical protein; 42.1 73 0.0016 24.2 5.1 38 116-153 60-98 (180)
217 cd02034 CooC The accessory pro 41.8 75 0.0016 22.0 4.8 37 10-46 1-37 (116)
218 COG0763 LpxB Lipid A disacchar 41.8 86 0.0019 26.8 5.9 48 99-151 72-125 (381)
219 TIGR03837 efp_adjacent_2 conse 41.3 38 0.00083 28.8 3.7 28 19-46 11-39 (371)
220 PF12695 Abhydrolase_5: Alpha/ 41.0 85 0.0018 21.4 5.2 33 12-45 3-35 (145)
221 PF03720 UDPG_MGDP_dh_C: UDP-g 40.7 40 0.00086 22.8 3.2 24 23-46 17-40 (106)
222 COG0467 RAD55 RecA-superfamily 40.4 65 0.0014 25.4 4.9 43 9-51 24-66 (260)
223 TIGR02700 flavo_MJ0208 archaeo 40.2 48 0.001 26.1 4.0 32 20-51 10-44 (234)
224 PRK06719 precorrin-2 dehydroge 40.1 49 0.0011 24.3 3.9 32 9-45 14-45 (157)
225 PRK12404 stage V sporulation p 40.1 1.2E+02 0.0026 25.5 6.3 66 98-165 59-127 (334)
226 KOG4513 Phosphoglycerate mutas 40.1 55 0.0012 28.1 4.4 41 5-45 121-166 (531)
227 PF03853 YjeF_N: YjeF-related 39.9 34 0.00074 25.4 3.0 37 6-43 23-59 (169)
228 TIGR03029 EpsG chain length de 39.9 1.9E+02 0.0041 22.9 15.9 37 8-44 102-140 (274)
229 cd01981 Pchlide_reductase_B Pc 39.9 53 0.0011 28.2 4.5 27 116-145 370-396 (430)
230 TIGR00064 ftsY signal recognit 39.6 84 0.0018 25.3 5.4 38 10-47 74-111 (272)
231 cd03792 GT1_Trehalose_phosphor 39.4 46 0.001 27.5 4.0 30 17-46 10-39 (372)
232 TIGR00355 purH phosphoribosyla 39.4 1.4E+02 0.003 26.6 7.0 27 23-51 11-37 (511)
233 PF02780 Transketolase_C: Tran 39.4 53 0.0011 22.7 3.8 35 8-44 9-43 (124)
234 PRK11524 putative methyltransf 38.4 43 0.00093 27.0 3.6 42 116-157 207-250 (284)
235 TIGR00708 cobA cob(I)alamin ad 38.4 1.1E+02 0.0024 23.1 5.5 35 8-42 5-39 (173)
236 KOG1615 Phosphoserine phosphat 38.2 50 0.0011 25.7 3.6 39 98-140 90-129 (227)
237 PRK09922 UDP-D-galactose:(gluc 38.1 65 0.0014 26.5 4.7 38 9-46 1-43 (359)
238 PRK08229 2-dehydropantoate 2-r 38.0 37 0.0008 27.9 3.2 33 9-46 3-35 (341)
239 COG0569 TrkA K+ transport syst 37.8 32 0.00068 26.9 2.6 21 26-46 13-33 (225)
240 PF13460 NAD_binding_10: NADH( 37.7 36 0.00078 24.8 2.9 28 17-46 5-32 (183)
241 COG0504 PyrG CTP synthase (UTP 37.5 72 0.0016 28.3 4.9 39 10-48 2-43 (533)
242 PF00448 SRP54: SRP54-type pro 37.2 65 0.0014 24.5 4.3 39 10-48 3-41 (196)
243 PF06564 YhjQ: YhjQ protein; 37.1 68 0.0015 25.6 4.4 27 17-43 11-37 (243)
244 KOG2585 Uncharacterized conser 37.0 66 0.0014 28.0 4.5 37 6-45 264-302 (453)
245 COG2084 MmsB 3-hydroxyisobutyr 36.9 56 0.0012 26.8 4.0 31 10-45 2-32 (286)
246 TIGR03264 met_CoM_red_C methyl 36.9 46 0.001 25.3 3.2 34 10-43 35-69 (194)
247 COG0300 DltE Short-chain dehyd 36.8 34 0.00074 27.7 2.7 33 8-43 5-37 (265)
248 PLN02293 adenine phosphoribosy 36.7 97 0.0021 23.5 5.1 29 116-144 62-92 (187)
249 PRK13982 bifunctional SbtC-lik 36.6 49 0.0011 29.2 3.8 43 8-51 70-112 (475)
250 PLN02650 dihydroflavonol-4-red 36.5 78 0.0017 26.0 5.0 36 1-43 1-36 (351)
251 PRK07533 enoyl-(acyl carrier p 36.5 98 0.0021 24.1 5.3 41 1-43 2-43 (258)
252 cd03809 GT1_mtfB_like This fam 36.4 57 0.0012 26.0 4.1 29 19-47 15-43 (365)
253 PRK05579 bifunctional phosphop 36.4 44 0.00096 28.6 3.5 42 8-50 6-47 (399)
254 PRK09177 xanthine-guanine phos 36.3 1.1E+02 0.0024 22.4 5.2 40 99-141 17-58 (156)
255 TIGR03018 pepcterm_TyrKin exop 35.8 1.1E+02 0.0024 23.2 5.4 39 7-45 33-74 (207)
256 cd02037 MRP-like MRP (Multiple 35.8 84 0.0018 22.8 4.6 31 15-45 7-37 (169)
257 TIGR00313 cobQ cobyric acid sy 35.7 3.1E+02 0.0066 24.1 11.8 29 17-45 8-36 (475)
258 PRK14619 NAD(P)H-dependent gly 35.6 51 0.0011 26.9 3.6 33 8-45 4-36 (308)
259 PF01380 SIS: SIS domain SIS d 35.5 85 0.0018 21.3 4.4 38 10-48 55-92 (131)
260 PF10093 DUF2331: Uncharacteri 35.4 48 0.001 28.2 3.5 28 19-46 11-39 (374)
261 PF02558 ApbA: Ketopantoate re 35.3 39 0.00085 24.0 2.7 22 26-47 11-32 (151)
262 PRK10481 hypothetical protein; 35.2 78 0.0017 24.9 4.4 45 100-148 170-217 (224)
263 COG2085 Predicted dinucleotide 35.2 46 0.001 26.0 3.1 23 26-48 14-36 (211)
264 PRK00652 lpxK tetraacyldisacch 35.1 83 0.0018 26.2 4.8 34 10-43 51-86 (325)
265 PRK13699 putative methylase; P 35.0 1.7E+02 0.0038 22.8 6.4 42 117-158 163-206 (227)
266 PRK00771 signal recognition pa 34.9 1.1E+02 0.0024 26.6 5.7 41 8-48 95-135 (437)
267 TIGR01990 bPGM beta-phosphoglu 34.9 1.8E+02 0.0038 21.1 8.1 24 25-48 92-115 (185)
268 PF01497 Peripla_BP_2: Peripla 34.8 60 0.0013 24.7 3.8 33 116-148 60-94 (238)
269 PF05728 UPF0227: Uncharacteri 34.7 1.8E+02 0.004 22.0 6.3 36 118-153 61-97 (187)
270 PF07355 GRDB: Glycine/sarcosi 34.6 91 0.002 26.3 4.9 28 115-142 79-116 (349)
271 PF02350 Epimerase_2: UDP-N-ac 34.5 56 0.0012 27.3 3.8 41 99-146 57-100 (346)
272 COG1618 Predicted nucleotide k 34.3 90 0.0019 23.6 4.4 41 6-46 3-43 (179)
273 TIGR01425 SRP54_euk signal rec 34.3 1E+02 0.0022 26.8 5.3 40 9-48 101-140 (429)
274 PRK07773 replicative DNA helic 34.2 2.8E+02 0.006 26.6 8.6 42 11-52 220-262 (886)
275 CHL00076 chlB photochlorophyll 34.2 71 0.0015 28.4 4.5 26 116-144 374-399 (513)
276 COG0381 WecB UDP-N-acetylgluco 33.9 3.1E+02 0.0066 23.6 8.6 111 12-145 6-124 (383)
277 PRK06222 ferredoxin-NADP(+) re 33.7 60 0.0013 26.1 3.7 37 9-47 99-135 (281)
278 TIGR02201 heptsyl_trn_III lipo 33.6 56 0.0012 26.9 3.6 42 10-51 1-44 (344)
279 cd01916 ACS_1 Acetyl-CoA synth 33.5 44 0.00095 31.1 3.1 34 115-148 264-299 (731)
280 TIGR02149 glgA_Coryne glycogen 33.3 76 0.0016 26.0 4.4 36 9-45 1-41 (388)
281 PLN02778 3,5-epimerase/4-reduc 33.3 1.4E+02 0.003 24.1 5.8 36 4-43 5-40 (298)
282 TIGR00730 conserved hypothetic 33.2 84 0.0018 23.7 4.2 34 10-43 2-39 (178)
283 cd01147 HemV-2 Metal binding p 33.1 69 0.0015 24.9 3.9 40 99-146 65-107 (262)
284 PF01695 IstB_IS21: IstB-like 33.1 1.1E+02 0.0023 22.9 4.8 44 8-51 47-90 (178)
285 PTZ00318 NADH dehydrogenase-li 32.9 60 0.0013 27.7 3.8 38 5-47 7-44 (424)
286 TIGR00640 acid_CoA_mut_C methy 32.7 1.3E+02 0.0029 21.3 5.0 44 8-51 2-45 (132)
287 PTZ00445 p36-lilke protein; Pr 32.6 48 0.001 26.0 2.8 28 20-47 74-102 (219)
288 cd01143 YvrC Periplasmic bindi 32.6 78 0.0017 23.3 4.0 40 99-146 51-91 (195)
289 PF00391 PEP-utilizers: PEP-ut 32.6 66 0.0014 20.6 3.1 30 116-145 30-61 (80)
290 TIGR01278 DPOR_BchB light-inde 32.5 83 0.0018 27.8 4.7 26 115-143 363-388 (511)
291 COG3349 Uncharacterized conser 32.5 51 0.0011 29.1 3.2 33 10-47 2-34 (485)
292 COG1028 FabG Dehydrogenases wi 32.4 1.1E+02 0.0024 23.4 5.0 36 8-46 4-39 (251)
293 PF09001 DUF1890: Domain of un 32.1 37 0.00081 24.6 2.0 28 24-51 15-42 (139)
294 PF06418 CTP_synth_N: CTP synt 31.9 66 0.0014 26.2 3.5 39 10-48 2-43 (276)
295 TIGR02114 coaB_strep phosphopa 31.9 50 0.0011 25.8 2.9 18 26-43 29-46 (227)
296 TIGR00315 cdhB CO dehydrogenas 31.8 1.3E+02 0.0028 22.5 4.9 30 115-145 28-63 (162)
297 PRK06603 enoyl-(acyl carrier p 31.7 1E+02 0.0022 24.1 4.7 34 9-43 8-41 (260)
298 PRK06835 DNA replication prote 31.7 71 0.0015 26.6 3.9 43 9-51 184-226 (329)
299 PLN02686 cinnamoyl-CoA reducta 31.7 1.1E+02 0.0024 25.5 5.2 34 8-44 52-85 (367)
300 COG0665 DadA Glycine/D-amino a 31.6 61 0.0013 26.7 3.6 34 7-45 3-36 (387)
301 PLN02605 monogalactosyldiacylg 31.6 1.3E+02 0.0029 25.0 5.7 48 89-145 80-137 (382)
302 TIGR01743 purR_Bsub pur operon 31.5 1.1E+02 0.0023 24.9 4.7 30 115-144 127-158 (268)
303 TIGR00745 apbA_panE 2-dehydrop 31.4 39 0.00085 26.8 2.3 25 27-51 5-29 (293)
304 TIGR00288 conserved hypothetic 31.1 70 0.0015 23.8 3.4 25 19-46 115-139 (160)
305 PLN03050 pyridoxine (pyridoxam 31.0 50 0.0011 26.3 2.8 33 9-44 61-95 (246)
306 TIGR03088 stp2 sugar transfera 30.7 89 0.0019 25.6 4.4 36 10-45 3-40 (374)
307 KOG0832 Mitochondrial/chloropl 30.7 41 0.00088 26.7 2.1 34 116-149 173-208 (251)
308 PLN02496 probable phosphopanto 30.6 60 0.0013 25.3 3.1 42 8-51 19-60 (209)
309 KOG1014 17 beta-hydroxysteroid 30.6 49 0.0011 27.4 2.7 31 10-43 50-80 (312)
310 cd00395 Tyr_Trp_RS_core cataly 30.5 45 0.00099 26.9 2.5 24 20-44 16-39 (273)
311 PF01738 DLH: Dienelactone hyd 30.5 1.3E+02 0.0028 22.7 5.0 33 9-41 14-46 (218)
312 PRK00881 purH bifunctional pho 30.5 2.4E+02 0.0052 25.2 7.0 28 22-51 14-41 (513)
313 PRK00455 pyrE orotate phosphor 30.4 1.3E+02 0.0029 22.8 5.0 30 116-145 64-95 (202)
314 PF01266 DAO: FAD dependent ox 30.4 54 0.0012 26.3 3.0 20 26-45 12-31 (358)
315 CHL00194 ycf39 Ycf39; Provisio 30.4 1.2E+02 0.0025 24.6 5.0 31 10-44 2-32 (317)
316 PRK08939 primosomal protein Dn 30.4 89 0.0019 25.7 4.2 43 9-51 157-199 (306)
317 cd01017 AdcA Metal binding pro 30.2 1.4E+02 0.003 24.0 5.3 44 99-146 207-252 (282)
318 PRK06523 short chain dehydroge 30.1 1.4E+02 0.003 23.0 5.2 32 10-44 10-41 (260)
319 PF01297 TroA: Periplasmic sol 30.1 72 0.0016 25.1 3.6 43 100-146 187-231 (256)
320 PRK06114 short chain dehydroge 30.0 1E+02 0.0023 23.7 4.5 33 9-44 8-40 (254)
321 cd01980 Chlide_reductase_Y Chl 29.9 99 0.0021 26.5 4.6 27 115-144 349-375 (416)
322 cd03466 Nitrogenase_NifN_2 Nit 29.8 1E+02 0.0022 26.6 4.7 26 115-143 371-396 (429)
323 PLN02775 Probable dihydrodipic 29.7 1.2E+02 0.0026 24.9 4.8 28 8-40 11-39 (286)
324 PRK11889 flhF flagellar biosyn 29.7 1.4E+02 0.003 26.0 5.3 41 8-48 241-281 (436)
325 PRK06171 sorbitol-6-phosphate 29.6 1.4E+02 0.003 23.1 5.2 33 9-44 9-41 (266)
326 COG0451 WcaG Nucleoside-diphos 29.6 76 0.0016 25.1 3.7 26 19-46 9-34 (314)
327 TIGR00640 acid_CoA_mut_C methy 29.5 80 0.0017 22.5 3.4 38 7-44 52-90 (132)
328 KOG1053 Glutamate-gated NMDA-t 29.5 29 0.00062 33.0 1.3 75 63-144 686-760 (1258)
329 PRK10566 esterase; Provisional 29.4 1.3E+02 0.0027 23.0 4.9 34 11-44 29-62 (249)
330 cd03109 DTBS Dethiobiotin synt 29.4 1.2E+02 0.0027 21.3 4.4 34 12-45 3-36 (134)
331 PRK13354 tyrosyl-tRNA syntheta 29.3 64 0.0014 27.8 3.3 36 10-46 37-75 (410)
332 PRK08309 short chain dehydroge 29.3 1E+02 0.0023 23.0 4.2 19 26-44 13-31 (177)
333 PLN02211 methyl indole-3-aceta 29.3 1.6E+02 0.0034 23.4 5.5 39 7-46 17-55 (273)
334 TIGR00176 mobB molybdopterin-g 29.2 1.3E+02 0.0029 21.8 4.7 35 11-45 2-36 (155)
335 PRK06196 oxidoreductase; Provi 29.2 1.1E+02 0.0024 24.7 4.7 32 9-43 26-57 (315)
336 TIGR01744 XPRTase xanthine pho 29.1 1.3E+02 0.0028 22.9 4.7 31 116-146 50-82 (191)
337 PF01316 Arg_repressor: Argini 29.1 34 0.00073 21.7 1.2 24 25-48 22-45 (70)
338 PRK07454 short chain dehydroge 28.9 1.3E+02 0.0028 22.9 4.8 34 8-44 5-38 (241)
339 cd03115 SRP The signal recogni 28.9 1.6E+02 0.0034 21.4 5.1 37 11-47 3-39 (173)
340 TIGR03453 partition_RepA plasm 28.9 1.1E+02 0.0025 25.7 4.8 38 8-45 103-142 (387)
341 PRK06505 enoyl-(acyl carrier p 28.8 1.2E+02 0.0026 24.0 4.7 34 9-43 7-40 (271)
342 PRK10125 putative glycosyl tra 28.7 1.1E+02 0.0024 26.0 4.7 38 9-46 1-40 (405)
343 PRK15411 rcsA colanic acid cap 28.6 1.3E+02 0.0029 22.9 4.8 32 115-146 46-86 (207)
344 PRK14974 cell division protein 28.6 1.7E+02 0.0036 24.6 5.6 39 9-47 141-179 (336)
345 PRK04148 hypothetical protein; 28.6 64 0.0014 23.3 2.7 30 8-43 17-46 (134)
346 PRK10037 cell division protein 28.6 1.1E+02 0.0023 24.0 4.3 35 11-45 4-39 (250)
347 cd06267 PBP1_LacI_sugar_bindin 28.6 1.5E+02 0.0033 22.3 5.1 31 116-146 55-87 (264)
348 PRK08265 short chain dehydroge 28.5 1.2E+02 0.0026 23.6 4.6 32 10-44 7-38 (261)
349 PRK02910 light-independent pro 28.5 1.1E+02 0.0023 27.2 4.7 26 115-143 361-386 (519)
350 PRK14478 nitrogenase molybdenu 28.4 72 0.0016 28.0 3.6 25 115-142 392-416 (475)
351 PRK09213 pur operon repressor; 28.3 1.3E+02 0.0028 24.4 4.7 31 115-145 129-161 (271)
352 PF02142 MGS: MGS-like domain 28.3 61 0.0013 21.4 2.5 25 25-51 2-26 (95)
353 PRK10490 sensor protein KdpD; 28.1 1E+02 0.0022 29.3 4.8 38 6-43 22-59 (895)
354 PRK06924 short chain dehydroge 28.0 1.3E+02 0.0027 23.1 4.6 32 10-44 2-33 (251)
355 TIGR01285 nifN nitrogenase mol 28.0 89 0.0019 27.0 4.0 24 115-141 372-395 (432)
356 PRK14620 NAD(P)H-dependent gly 27.9 68 0.0015 26.2 3.2 32 9-45 1-32 (326)
357 PRK05708 2-dehydropantoate 2-r 27.9 71 0.0015 26.1 3.3 33 8-45 2-34 (305)
358 PLN02327 CTP synthase 27.9 1.2E+02 0.0025 27.4 4.7 40 10-49 2-44 (557)
359 TIGR03499 FlhF flagellar biosy 27.8 1.4E+02 0.003 24.2 4.9 38 10-47 196-235 (282)
360 TIGR03325 BphB_TodD cis-2,3-di 27.6 1.3E+02 0.0027 23.4 4.6 31 10-43 6-36 (262)
361 cd03113 CTGs CTP synthetase (C 27.6 1.4E+02 0.0029 24.1 4.6 38 11-48 2-42 (255)
362 PLN00141 Tic62-NAD(P)-related 27.5 1.7E+02 0.0037 22.6 5.3 31 9-43 18-48 (251)
363 TIGR00715 precor6x_red precorr 27.5 68 0.0015 25.7 3.0 34 9-47 1-34 (256)
364 PRK06935 2-deoxy-D-gluconate 3 27.5 1.2E+02 0.0026 23.4 4.4 34 9-45 15-48 (258)
365 TIGR01969 minD_arch cell divis 27.5 1.3E+02 0.0029 23.1 4.7 29 17-45 10-38 (251)
366 PRK14106 murD UDP-N-acetylmura 27.5 1.1E+02 0.0024 26.1 4.6 32 9-45 6-37 (450)
367 cd00861 ProRS_anticodon_short 27.5 1.4E+02 0.003 19.0 4.2 34 10-43 3-38 (94)
368 COG1255 Uncharacterized protei 27.5 72 0.0016 22.6 2.7 19 25-43 25-43 (129)
369 cd00805 TyrRS_core catalytic c 27.5 69 0.0015 25.8 3.1 35 11-46 5-42 (269)
370 PHA02519 plasmid partition pro 27.4 1.4E+02 0.0031 25.4 5.1 35 9-43 106-142 (387)
371 PF08384 NPP: Pro-opiomelanoco 27.4 15 0.00032 21.3 -0.6 10 16-25 35-44 (45)
372 TIGR03087 stp1 sugar transfera 27.4 53 0.0012 27.5 2.5 32 14-46 8-40 (397)
373 PF03796 DnaB_C: DnaB-like hel 27.4 1.6E+02 0.0036 23.0 5.2 41 11-51 22-63 (259)
374 TIGR02015 BchY chlorophyllide 27.3 84 0.0018 27.1 3.7 26 115-143 354-379 (422)
375 TIGR01675 plant-AP plant acid 27.3 88 0.0019 24.7 3.5 26 22-47 122-147 (229)
376 PLN02331 phosphoribosylglycina 27.2 1.7E+02 0.0037 22.6 5.1 46 100-145 12-57 (207)
377 PRK06718 precorrin-2 dehydroge 27.2 1E+02 0.0023 23.5 3.9 33 9-46 11-43 (202)
378 PRK12474 hypothetical protein; 27.2 1.4E+02 0.0031 26.3 5.2 41 99-143 189-235 (518)
379 TIGR01963 PHB_DH 3-hydroxybuty 27.1 1.3E+02 0.0028 23.0 4.5 32 11-45 3-34 (255)
380 PRK02277 orotate phosphoribosy 27.1 1.7E+02 0.0038 22.3 5.1 32 115-146 84-117 (200)
381 PRK13608 diacylglycerol glucos 27.0 1.2E+02 0.0027 25.5 4.7 34 9-42 6-43 (391)
382 PRK10565 putative carbohydrate 27.0 85 0.0019 27.8 3.8 33 9-44 61-95 (508)
383 PF07451 SpoVAD: Stage V sporu 26.9 3.4E+02 0.0075 22.7 6.9 49 98-148 56-107 (329)
384 cd01965 Nitrogenase_MoFe_beta_ 26.9 1.2E+02 0.0026 26.0 4.6 38 101-145 360-397 (428)
385 PF02844 GARS_N: Phosphoribosy 26.9 1.6E+02 0.0034 20.1 4.3 28 115-142 61-91 (100)
386 cd02040 NifH NifH gene encodes 26.9 1.4E+02 0.003 23.4 4.7 34 10-43 3-36 (270)
387 PF13407 Peripla_BP_4: Peripla 26.7 1.6E+02 0.0034 22.6 5.0 32 115-146 54-89 (257)
388 PRK13869 plasmid-partitioning 26.7 1.4E+02 0.003 25.6 4.9 37 9-45 121-159 (405)
389 PRK12747 short chain dehydroge 26.6 1.4E+02 0.003 23.0 4.6 31 10-43 5-35 (252)
390 PRK00207 sulfur transfer compl 26.6 1.3E+02 0.0028 21.3 4.0 22 22-43 17-39 (128)
391 TIGR03371 cellulose_yhjQ cellu 26.6 1.2E+02 0.0025 23.4 4.2 36 11-46 4-40 (246)
392 PRK06180 short chain dehydroge 26.5 1.4E+02 0.0031 23.4 4.7 33 10-45 5-37 (277)
393 PRK05234 mgsA methylglyoxal sy 26.5 2.5E+02 0.0054 20.3 10.3 40 8-51 4-45 (142)
394 PRK00941 acetyl-CoA decarbonyl 26.3 72 0.0016 30.0 3.2 35 115-149 301-337 (781)
395 PRK09283 delta-aminolevulinic 26.3 1.7E+02 0.0038 24.4 5.1 49 99-152 229-280 (323)
396 PF03537 Glyco_hydro_114: Glyc 26.1 1E+02 0.0022 19.5 3.1 33 115-147 25-59 (74)
397 TIGR00379 cobB cobyrinic acid 26.1 2E+02 0.0044 25.0 5.9 30 15-44 7-36 (449)
398 PRK05973 replicative DNA helic 26.1 1.5E+02 0.0032 23.5 4.6 42 10-51 66-107 (237)
399 PRK13608 diacylglycerol glucos 26.1 1.1E+02 0.0024 25.7 4.3 32 115-146 103-136 (391)
400 PRK09435 membrane ATPase/prote 26.0 1.8E+02 0.004 24.3 5.4 42 7-48 55-96 (332)
401 PLN02695 GDP-D-mannose-3',5'-e 26.0 1.6E+02 0.0035 24.6 5.2 34 7-44 20-53 (370)
402 CHL00175 minD septum-site dete 26.0 1.7E+02 0.0037 23.2 5.1 37 9-45 15-53 (281)
403 PRK14618 NAD(P)H-dependent gly 26.0 82 0.0018 25.8 3.3 33 8-45 4-36 (328)
404 PF01656 CbiA: CobQ/CobB/MinD/ 25.9 1.5E+02 0.0033 21.5 4.6 124 14-152 5-130 (195)
405 PRK13011 formyltetrahydrofolat 25.9 1.8E+02 0.0038 23.8 5.2 44 99-144 101-144 (286)
406 PRK12367 short chain dehydroge 25.9 1.2E+02 0.0026 23.7 4.2 37 6-45 11-47 (245)
407 KOG1209 1-Acyl dihydroxyaceton 25.8 1.3E+02 0.0028 24.0 4.1 38 1-42 1-38 (289)
408 COG1090 Predicted nucleoside-d 25.7 68 0.0015 26.3 2.7 20 26-45 12-31 (297)
409 TIGR03274 methan_mark_7 putati 25.7 81 0.0018 25.7 3.0 34 10-43 72-106 (302)
410 PRK09361 radB DNA repair and r 25.7 1.8E+02 0.0039 22.2 5.1 38 8-45 22-60 (225)
411 PLN02989 cinnamyl-alcohol dehy 25.7 1.3E+02 0.0028 24.2 4.5 31 10-43 6-36 (325)
412 COG0543 UbiB 2-polyprenylpheno 25.5 94 0.002 24.6 3.5 38 10-49 109-148 (252)
413 PF02302 PTS_IIB: PTS system, 25.5 1.2E+02 0.0026 19.3 3.5 36 10-45 1-37 (90)
414 PRK05802 hypothetical protein; 25.5 92 0.002 25.7 3.5 37 9-47 173-209 (320)
415 COG1004 Ugd Predicted UDP-gluc 25.4 90 0.0019 27.0 3.4 32 9-45 1-32 (414)
416 PRK10427 putative PTS system f 25.3 1.9E+02 0.004 20.1 4.6 35 9-43 3-40 (114)
417 PF13419 HAD_2: Haloacid dehal 25.3 2.4E+02 0.0052 19.6 7.5 23 25-47 82-104 (176)
418 TIGR01918 various_sel_PB selen 25.3 1.6E+02 0.0034 25.6 4.9 30 115-144 75-114 (431)
419 PRK08177 short chain dehydroge 25.3 1.5E+02 0.0033 22.3 4.6 33 10-45 2-34 (225)
420 PF00175 NAD_binding_1: Oxidor 25.3 1.2E+02 0.0026 19.8 3.6 25 22-46 8-34 (109)
421 TIGR00173 menD 2-succinyl-5-en 25.3 1.6E+02 0.0034 25.3 5.1 43 99-145 199-246 (432)
422 PRK10867 signal recognition pa 25.2 1.8E+02 0.0038 25.4 5.3 41 9-49 101-142 (433)
423 TIGR01917 gly_red_sel_B glycin 25.2 1.6E+02 0.0035 25.6 4.9 30 115-144 75-114 (431)
424 PRK13609 diacylglycerol glucos 25.2 1.4E+02 0.003 24.8 4.6 31 115-145 103-135 (380)
425 PF02606 LpxK: Tetraacyldisacc 25.1 1E+02 0.0023 25.6 3.8 34 11-44 40-73 (326)
426 PRK08558 adenine phosphoribosy 25.1 1.3E+02 0.0028 23.8 4.2 29 115-143 110-140 (238)
427 COG2179 Predicted hydrolase of 25.1 1.6E+02 0.0035 22.2 4.4 46 98-147 48-94 (175)
428 COG1282 PntB NAD/NADP transhyd 25.1 97 0.0021 26.5 3.5 37 10-46 310-349 (463)
429 TIGR01968 minD_bact septum sit 25.0 1.6E+02 0.0035 22.7 4.8 28 17-44 11-38 (261)
430 TIGR01380 glut_syn glutathione 25.0 1.1E+02 0.0023 25.1 3.9 27 21-47 16-42 (312)
431 PHA02857 monoglyceride lipase; 24.9 1.5E+02 0.0033 23.0 4.6 35 9-43 25-59 (276)
432 PF13614 AAA_31: AAA domain; P 24.9 1.6E+02 0.0034 20.7 4.4 33 15-47 8-40 (157)
433 PRK06567 putative bifunctional 24.8 84 0.0018 30.5 3.5 33 7-44 382-414 (1028)
434 TIGR01832 kduD 2-deoxy-D-gluco 24.8 1.5E+02 0.0033 22.5 4.6 32 10-44 6-37 (248)
435 PRK08293 3-hydroxybutyryl-CoA 24.8 85 0.0018 25.2 3.2 32 9-45 4-35 (287)
436 PRK07677 short chain dehydroge 24.8 1.5E+02 0.0032 22.8 4.5 31 10-43 2-32 (252)
437 cd01976 Nitrogenase_MoFe_alpha 24.6 93 0.002 26.8 3.5 27 115-144 368-394 (421)
438 KOG1432 Predicted DNA repair e 24.6 81 0.0017 26.7 3.0 32 115-146 99-143 (379)
439 cd01124 KaiC KaiC is a circadi 24.6 2.1E+02 0.0045 20.8 5.1 41 11-51 2-42 (187)
440 PRK11064 wecC UDP-N-acetyl-D-m 24.5 1.1E+02 0.0024 26.2 4.0 32 9-45 4-35 (415)
441 PF00590 TP_methylase: Tetrapy 24.5 1.3E+02 0.0029 22.5 4.1 48 9-56 77-126 (210)
442 PRK13849 putative crown gall t 24.4 1.5E+02 0.0033 23.1 4.5 30 17-46 11-40 (231)
443 PRK06182 short chain dehydroge 24.4 1.6E+02 0.0034 23.0 4.6 32 10-44 4-35 (273)
444 TIGR01689 EcbF-BcbF capsule bi 24.4 1.3E+02 0.0027 21.4 3.6 26 23-48 27-52 (126)
445 PRK00784 cobyric acid synthase 24.2 1.5E+02 0.0033 26.0 4.9 34 11-44 5-39 (488)
446 PRK09186 flagellin modificatio 24.2 1.5E+02 0.0034 22.6 4.5 32 10-44 5-36 (256)
447 PRK03094 hypothetical protein; 24.1 79 0.0017 20.7 2.3 21 25-45 10-30 (80)
448 cd06167 LabA_like LabA_like pr 24.1 99 0.0021 21.8 3.1 31 10-45 102-132 (149)
449 PHA02518 ParA-like protein; Pr 24.1 1.2E+02 0.0025 22.6 3.7 30 17-46 10-39 (211)
450 PF01494 FAD_binding_3: FAD bi 24.0 83 0.0018 25.2 3.0 18 26-43 14-31 (356)
451 PF05991 NYN_YacP: YacP-like N 23.9 85 0.0019 23.3 2.8 31 23-53 81-111 (166)
452 cd02067 B12-binding B12 bindin 23.9 1.5E+02 0.0032 20.1 3.9 35 8-42 50-85 (119)
453 PF03446 NAD_binding_2: NAD bi 23.8 87 0.0019 22.8 2.8 29 10-43 3-31 (163)
454 cd08173 Gro1PDH Sn-glycerol-1- 23.8 1.6E+02 0.0035 24.3 4.7 33 116-148 78-113 (339)
455 PRK12744 short chain dehydroge 23.7 2.1E+02 0.0045 22.1 5.2 31 10-43 9-39 (257)
456 cd07766 DHQ_Fe-ADH Dehydroquin 23.7 1.8E+02 0.0039 23.8 5.0 35 116-150 78-117 (332)
457 PLN02350 phosphogluconate dehy 23.7 83 0.0018 27.9 3.1 36 1-43 1-36 (493)
458 PRK07060 short chain dehydroge 23.6 2.2E+02 0.0047 21.6 5.2 20 25-44 22-41 (245)
459 KOG1838 Alpha/beta hydrolase [ 23.6 2.5E+02 0.0053 24.4 5.8 40 7-46 124-164 (409)
460 PRK12481 2-deoxy-D-gluconate 3 23.6 1.7E+02 0.0038 22.5 4.7 33 9-44 8-40 (251)
461 cd02033 BchX Chlorophyllide re 23.6 2.3E+02 0.0051 23.6 5.6 37 9-45 32-68 (329)
462 PRK00094 gpsA NAD(P)H-dependen 23.5 93 0.002 25.1 3.2 32 9-45 2-33 (325)
463 PF08357 SEFIR: SEFIR domain; 23.5 1E+02 0.0022 21.9 3.1 30 12-41 5-35 (150)
464 PRK07889 enoyl-(acyl carrier p 23.5 1.6E+02 0.0035 22.9 4.5 32 9-43 7-40 (256)
465 cd01075 NAD_bind_Leu_Phe_Val_D 23.4 1.1E+02 0.0025 23.2 3.5 30 8-42 28-57 (200)
466 cd01424 MGS_CPS_II Methylglyox 23.3 2.1E+02 0.0046 19.1 4.6 84 20-142 10-100 (110)
467 PRK08303 short chain dehydroge 23.3 1.6E+02 0.0034 23.9 4.5 32 9-43 8-39 (305)
468 PF14626 RNase_Zc3h12a_2: Zc3h 23.3 1E+02 0.0022 21.9 2.8 30 22-51 9-38 (122)
469 PRK05632 phosphate acetyltrans 23.3 6E+02 0.013 23.5 12.1 34 10-43 4-38 (684)
470 TIGR01829 AcAcCoA_reduct aceto 23.3 1.6E+02 0.0034 22.3 4.3 31 11-44 2-32 (242)
471 PRK08862 short chain dehydroge 23.3 2E+02 0.0043 22.1 4.9 31 10-43 6-36 (227)
472 TIGR01307 pgm_bpd_ind 2,3-bisp 23.3 1.7E+02 0.0036 26.1 4.8 39 6-44 105-148 (501)
473 KOG0725 Reductases with broad 23.3 1.4E+02 0.0031 23.9 4.2 37 7-46 6-42 (270)
474 PF07972 Flavodoxin_NdrI: NrdI 23.2 62 0.0013 22.9 1.8 42 98-142 58-106 (122)
475 PF00551 Formyl_trans_N: Formy 23.2 2.2E+02 0.0049 21.1 5.0 27 9-38 1-27 (181)
476 PRK07453 protochlorophyllide o 23.2 1.6E+02 0.0034 23.8 4.5 31 10-43 7-37 (322)
477 cd00384 ALAD_PBGS Porphobilino 23.2 2.5E+02 0.0053 23.4 5.4 47 100-151 222-271 (314)
478 PF03698 UPF0180: Uncharacteri 23.1 81 0.0018 20.6 2.2 22 25-46 10-31 (80)
479 TIGR02329 propionate_PrpR prop 23.1 1.8E+02 0.0038 26.0 5.0 41 99-146 132-172 (526)
480 PF03205 MobB: Molybdopterin g 23.0 2E+02 0.0043 20.5 4.5 34 10-43 2-35 (140)
481 cd00806 TrpRS_core catalytic c 23.0 88 0.0019 25.3 2.9 34 13-46 6-41 (280)
482 TIGR00337 PyrG CTP synthase. C 23.0 1.6E+02 0.0036 26.3 4.7 40 10-49 2-44 (525)
483 PRK06197 short chain dehydroge 22.9 2.2E+02 0.0047 22.7 5.3 33 9-44 16-48 (306)
484 PRK01906 tetraacyldisaccharide 22.9 1.2E+02 0.0026 25.4 3.8 33 11-43 61-93 (338)
485 TIGR00682 lpxK tetraacyldisacc 22.8 1.4E+02 0.0029 24.8 4.0 32 13-44 35-66 (311)
486 PRK15427 colanic acid biosynth 22.8 1.7E+02 0.0038 24.7 4.8 37 10-47 2-40 (406)
487 PRK10985 putative hydrolase; P 22.8 2.5E+02 0.0054 22.8 5.6 39 8-46 58-97 (324)
488 cd04823 ALAD_PBGS_aspartate_ri 22.7 2.4E+02 0.0052 23.5 5.3 48 100-152 227-277 (320)
489 PRK09545 znuA high-affinity zi 22.7 2.2E+02 0.0047 23.4 5.2 44 100-147 240-285 (311)
490 PRK06079 enoyl-(acyl carrier p 22.5 2E+02 0.0043 22.3 4.8 34 8-43 6-40 (252)
491 PF01012 ETF: Electron transfe 22.5 1.7E+02 0.0036 21.2 4.1 30 116-145 90-122 (164)
492 PF09140 MipZ: ATPase MipZ; I 22.5 1.6E+02 0.0034 23.9 4.1 31 17-47 10-40 (261)
493 PRK13394 3-hydroxybutyrate deh 22.5 2.1E+02 0.0045 21.9 5.0 33 9-44 7-39 (262)
494 PRK12726 flagellar biosynthesi 22.5 2.6E+02 0.0056 24.2 5.6 40 9-48 206-246 (407)
495 PRK11697 putative two-componen 22.4 1.9E+02 0.0041 21.9 4.6 33 115-147 46-83 (238)
496 TIGR01286 nifK nitrogenase mol 22.3 1.6E+02 0.0034 26.3 4.5 25 116-143 437-461 (515)
497 PF04609 MCR_C: Methyl-coenzym 22.3 1E+02 0.0022 24.9 3.0 34 10-43 73-107 (268)
498 PRK06965 acetolactate synthase 22.3 1.9E+02 0.0042 25.9 5.2 41 99-143 209-255 (587)
499 TIGR00725 conserved hypothetic 22.3 1.4E+02 0.0031 21.9 3.7 32 10-41 3-36 (159)
500 COG4081 Uncharacterized protei 22.3 82 0.0018 22.8 2.2 29 20-48 16-44 (148)
No 1
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.92 E-value=1.1e-23 Score=179.85 Aligned_cols=142 Identities=28% Similarity=0.445 Sum_probs=110.8
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCC
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQD 85 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (185)
+++.|++++|+|++||++||++|||+|+++|+.||+++++.+..++... ..++|+++.+|+++|++......+
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~-------~~~~i~~~~ipdglp~~~~~~~~~ 75 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLD-------PSSPISIATISDGYDQGGFSSAGS 75 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccC-------CCCCEEEEEcCCCCCCcccccccC
Confidence 4568999999999999999999999999999999999999765544211 113599999998777532122234
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhh
Q 029948 86 LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQ 156 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~ 156 (185)
...++..+.+.+.+.++++++++..+. ++.+|||+|++++|+.++|+++|||++.|++++++.++++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~--~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~ 144 (449)
T PLN02173 76 VPEYLQNFKTFGSKTVADIIRKHQSTD--NPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL 144 (449)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccC--CCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh
Confidence 545566655567889999998764322 234999999999999999999999999999999988866654
No 2
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.91 E-value=2.5e-23 Score=178.05 Aligned_cols=152 Identities=38% Similarity=0.625 Sum_probs=116.7
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCC
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDR 80 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~ 80 (185)
|..++ .+.||+++|+|++||++||++||++|++||+.|||++++.+.... . ...+++++..+|+++|++..
T Consensus 1 ~~~~~-~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~--~------~~~~~i~~~~ip~glp~~~~ 71 (451)
T PLN02410 1 MEEKP-ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSP--S------DDFTDFQFVTIPESLPESDF 71 (451)
T ss_pred CCcCC-CCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCccccccc--c------cCCCCeEEEeCCCCCCcccc
Confidence 56454 567999999999999999999999999999999999998764211 1 11135899999887765322
Q ss_pred CCCCCHHHHHHHHHHhCcHHHHHHHHHHhh-CCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHH
Q 029948 81 DATQDLPALCSSIRKTCLAPFLELLGKLNS-AGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPE 159 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (185)
... ....++..+.+.+.+.++++++++.. .. ++++|||+|++++|+.++|+++|||++.|++++++.++++++++.
T Consensus 72 ~~~-~~~~~~~~~~~~~~~~~~~~L~~l~~~~~--~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~ 148 (451)
T PLN02410 72 KNL-GPIEFLHKLNKECQVSFKDCLGQLVLQQG--NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDK 148 (451)
T ss_pred ccc-CHHHHHHHHHHHhHHHHHHHHHHHHhccC--CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHH
Confidence 211 23344454555567788888887632 22 467999999999999999999999999999999999999998887
Q ss_pred HHHCC
Q 029948 160 LVNRG 164 (185)
Q Consensus 160 l~~~~ 164 (185)
++..+
T Consensus 149 ~~~~~ 153 (451)
T PLN02410 149 LYANN 153 (451)
T ss_pred HHhcc
Confidence 76644
No 3
>PLN02562 UDP-glycosyltransferase
Probab=99.91 E-value=4.5e-23 Score=176.59 Aligned_cols=147 Identities=29% Similarity=0.544 Sum_probs=115.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHH
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLP 87 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (185)
+.||+++|+|++||++||++|||+|++||++||+++++.+..++.+.. ...++++++.+|++.+.+. ..++.
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~-----~~~~~i~~v~lp~g~~~~~---~~~~~ 77 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATL-----DPKLGITFMSISDGQDDDP---PRDFF 77 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhcc-----CCCCCEEEEECCCCCCCCc---cccHH
Confidence 469999999999999999999999999999999999998765553221 1113599999987654321 12343
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHHHCCC
Q 029948 88 ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPELVNRGI 165 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~~ 165 (185)
.++..+...+.+.++++++++... .+++|||+|++++|+.++|+++|||++.||+++++.+++++|+|.+...+.
T Consensus 78 ~l~~a~~~~~~~~l~~ll~~l~~~---~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~ 152 (448)
T PLN02562 78 SIENSMENTMPPQLERLLHKLDED---GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGL 152 (448)
T ss_pred HHHHHHHHhchHHHHHHHHHhcCC---CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccc
Confidence 444444445678899999876422 246899999999999999999999999999999999999999988766653
No 4
>PLN02555 limonoid glucosyltransferase
Probab=99.91 E-value=2.8e-23 Score=178.74 Aligned_cols=154 Identities=31% Similarity=0.478 Sum_probs=115.1
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCC-CC--C-CCCCCeeEEecCCCCC
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGP-DS--L-KGLPDFRFETIPDGLP 76 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~-~~--~-~~~~~i~~~~l~~~~~ 76 (185)
|+|.+. +.||+++|+|++||++||++||++|++||..||+++++.+..++.++... ++ . .....++|..+|+++|
T Consensus 1 ~~~~~~-~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp 79 (480)
T PLN02555 1 MESESS-LVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWA 79 (480)
T ss_pred CCCCCC-CCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCC
Confidence 788753 46999999999999999999999999999999999999766544211000 00 0 0112367777777676
Q ss_pred CCCCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhh
Q 029948 77 PSDRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQ 156 (185)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~ 156 (185)
++.. ...++..++..+.+.+.+.++++++++..+. ++++|||+|++++|+.++|+++|||.+.|++++++.++++++
T Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~ 156 (480)
T PLN02555 80 EDDP-RRQDLDLYLPQLELVGKREIPNLVKRYAEQG--RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYH 156 (480)
T ss_pred CCcc-cccCHHHHHHHHHHhhhHHHHHHHHHHhccC--CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHH
Confidence 5321 1234444555555456788898998764322 345999999999999999999999999999999999999998
Q ss_pred HH
Q 029948 157 FP 158 (185)
Q Consensus 157 ~~ 158 (185)
++
T Consensus 157 ~~ 158 (480)
T PLN02555 157 YY 158 (480)
T ss_pred Hh
Confidence 85
No 5
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.91 E-value=6.5e-23 Score=176.23 Aligned_cols=152 Identities=36% Similarity=0.529 Sum_probs=118.4
Q ss_pred CCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCC
Q 029948 2 GSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSD 79 (185)
Q Consensus 2 ~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~ 79 (185)
+|.++.+.||+++|+|++||++||++||++|++| ||+||+++++.+...+.+. . ..++++|+.+|++.|++.
T Consensus 4 ~~~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~-~-----~~~gi~fv~lp~~~p~~~ 77 (459)
T PLN02448 4 GSSPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSD-P-----KPDNIRFATIPNVIPSEL 77 (459)
T ss_pred CCCCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhcc-C-----CCCCEEEEECCCCCCCcc
Confidence 3456778999999999999999999999999999 9999999999887665322 1 113699999987555421
Q ss_pred CCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHH
Q 029948 80 RDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPE 159 (185)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (185)
....+...++......+.+.++++++++. .++||||+|++++|+.++|+++|||++.|+++++..++.+++++.
T Consensus 78 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~ 151 (459)
T PLN02448 78 -VRAADFPGFLEAVMTKMEAPFEQLLDRLE-----PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDL 151 (459)
T ss_pred -ccccCHHHHHHHHHHHhHHHHHHHHHhcC-----CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhh
Confidence 11234444444444345678888887652 368999999999999999999999999999999999999999887
Q ss_pred HHHCCC
Q 029948 160 LVNRGI 165 (185)
Q Consensus 160 l~~~~~ 165 (185)
+..++.
T Consensus 152 ~~~~~~ 157 (459)
T PLN02448 152 LPQNGH 157 (459)
T ss_pred hhhccC
Confidence 765443
No 6
>PLN02210 UDP-glucosyl transferase
Probab=99.90 E-value=1.5e-22 Score=173.72 Aligned_cols=143 Identities=26% Similarity=0.407 Sum_probs=110.8
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHH--HHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCC
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKL--LHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPS 78 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~--La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 78 (185)
|++....+.||+++|+|++||++|+++||++ |++||++||+++++.+.+++ ++.+ ...+.+++..+++++|++
T Consensus 1 ~~~~~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~-~~~~----~~~~~~~~~~~~~glp~~ 75 (456)
T PLN02210 1 MGSSEGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLL-STVE----KPRRPVDLVFFSDGLPKD 75 (456)
T ss_pred CCCcCCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhh-cccc----CCCCceEEEECCCCCCCC
Confidence 7777667889999999999999999999999 56999999999999876654 3212 112457777777666653
Q ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHH
Q 029948 79 DRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (185)
. ..+...++..+.+.+.+.+++++++ .++||||+|.+++|+.++|+++|||.+.||+.++.+++++++++
T Consensus 76 ~---~~~~~~~~~~~~~~~~~~l~~~l~~-------~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~ 145 (456)
T PLN02210 76 D---PRAPETLLKSLNKVGAKNLSKIIEE-------KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYY 145 (456)
T ss_pred c---ccCHHHHHHHHHHhhhHHHHHHHhc-------CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhh
Confidence 2 1233344454444455667766654 36899999999999999999999999999999999999988875
No 7
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.90 E-value=2.3e-22 Score=172.10 Aligned_cols=145 Identities=23% Similarity=0.405 Sum_probs=110.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEcCCcc-hhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHS-KGFHVTFVNTEFN-HNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQD 85 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~-rGh~Vt~it~~~~-~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (185)
+.|++++|+|++||++||++|||+|++ +|+.|||++++.+ ....... . ...++++++.+++++|.+......+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~-~----~~~~~i~~~~i~dglp~g~~~~~~~ 77 (455)
T PLN02152 3 PPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPN-H----NNVENLSFLTFSDGFDDGVISNTDD 77 (455)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhcc-C----CCCCCEEEEEcCCCCCCcccccccc
Confidence 459999999999999999999999996 6999999999854 2222111 0 1113599999987666531111233
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHH
Q 029948 86 LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPE 159 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (185)
...++....+.+.+.++++++++.+.. ++++|||+|++++|+.++|+++|||++.|++++++.++++++++.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~l~~~~--~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~ 149 (455)
T PLN02152 78 VQNRLVNFERNGDKALSDFIEANLNGD--SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST 149 (455)
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhccC--CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc
Confidence 444444455567889999998764322 356999999999999999999999999999999999999988763
No 8
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.90 E-value=1.9e-22 Score=173.77 Aligned_cols=148 Identities=22% Similarity=0.305 Sum_probs=107.7
Q ss_pred CCCC-CCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC----CC
Q 029948 1 MGSI-GVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD----GL 75 (185)
Q Consensus 1 m~~~-~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~ 75 (185)
|.+. ...+.|++++|||++||++||++|||+|+++|+.|||++++.+..++.+. . .+.++++++.+|. ++
T Consensus 1 ~~~~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~-~----~~~~~i~~~~lp~P~~~~l 75 (477)
T PLN02863 1 MTELNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPL-L----SKHPSIETLVLPFPSHPSI 75 (477)
T ss_pred CcccccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhh-c----ccCCCeeEEeCCCCCcCCC
Confidence 6665 36679999999999999999999999999999999999999887665322 1 1123577776552 33
Q ss_pred CCCCCCCCCC----HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHH
Q 029948 76 PPSDRDATQD----LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGF 151 (185)
Q Consensus 76 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~ 151 (185)
|++ .....+ ....+......+.+.+++++++. . .+++|||+|++++|+.++|+++|||++.||+++++.+
T Consensus 76 PdG-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~---~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~ 149 (477)
T PLN02863 76 PSG-VENVKDLPPSGFPLMIHALGELYAPLLSWFRSH---P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMAL 149 (477)
T ss_pred CCC-CcChhhcchhhHHHHHHHHHHhHHHHHHHHHhC---C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHH
Confidence 332 111111 11112222223456666677653 1 3679999999999999999999999999999999999
Q ss_pred HHHhhHHH
Q 029948 152 LAASQFPE 159 (185)
Q Consensus 152 ~~~~~~~~ 159 (185)
++++|++.
T Consensus 150 ~~~~~~~~ 157 (477)
T PLN02863 150 SIMYSLWR 157 (477)
T ss_pred HHHHHHhh
Confidence 99999863
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=99.89 E-value=3.8e-22 Score=171.35 Aligned_cols=146 Identities=23% Similarity=0.354 Sum_probs=108.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC----CCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP----DGLPPSDRDAT 83 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~ 83 (185)
+.||+++|+|++||++||++|||+|++||+.||+++++.+..++.+. . .. ..+.++++.+| +++|++. ...
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~-~-~~--~~~~i~~~~lp~p~~dglp~~~-~~~ 80 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKI-P-SQ--LSSSITLVSFPLPSVPGLPSSA-ESS 80 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhc-c-cc--CCCCeeEEECCCCccCCCCCCc-ccc
Confidence 57999999999999999999999999999999999999876555321 0 00 11358888887 3455321 111
Q ss_pred CCHH----HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHH
Q 029948 84 QDLP----ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPE 159 (185)
Q Consensus 84 ~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (185)
.++. .++....+.+.+.++++++++ +++|||+|++++|+.++|+++|||++.|++++++.++++++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~ 153 (472)
T PLN02670 81 TDVPYTKQQLLKKAFDLLEPPLTTFLETS-------KPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSS 153 (472)
T ss_pred cccchhhHHHHHHHHHHhHHHHHHHHHhC-------CCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHh
Confidence 2221 223333445567778887652 57999999999999999999999999999999999999887765
Q ss_pred HHHCCC
Q 029948 160 LVNRGI 165 (185)
Q Consensus 160 l~~~~~ 165 (185)
+..+|.
T Consensus 154 ~~~~~~ 159 (472)
T PLN02670 154 LMEGGD 159 (472)
T ss_pred hhhccc
Confidence 555554
No 10
>PLN02554 UDP-glycosyltransferase family protein
Probab=99.88 E-value=1.7e-21 Score=168.26 Aligned_cols=150 Identities=20% Similarity=0.278 Sum_probs=102.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCcchhhhhc-ccCCCCCC--CCCCeeEEecCCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKG--FHVTFVNTEFNHNRFIR-NKGPDSLK--GLPDFRFETIPDGLPPSDRDA 82 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~~~~~-~~~~~~~~--~~~~i~~~~l~~~~~~~~~~~ 82 (185)
+.||+++|+|++||++||++|||+|++|| ..||+++++.+..+... ........ ..++++++.+|++.+.. ..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~-~~- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPT-TE- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCc-cc-
Confidence 67999999999999999999999999998 88999998876432210 00000000 12359999998654321 11
Q ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHhhC---CCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHH
Q 029948 83 TQDLPALCSSIRKTCLAPFLELLGKLNSA---GNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPE 159 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~---~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~ 159 (185)
...+..++.. +.+.+++.++++... ...++.+|||+|++++|+.++|+++|||++.|++++++.+++++|+|.
T Consensus 80 ~~~~~~~~~~----~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~ 155 (481)
T PLN02554 80 DPTFQSYIDN----QKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQM 155 (481)
T ss_pred chHHHHHHHH----HHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhh
Confidence 1122222222 334445555444211 001235899999999999999999999999999999999999999987
Q ss_pred HHHC
Q 029948 160 LVNR 163 (185)
Q Consensus 160 l~~~ 163 (185)
++..
T Consensus 156 ~~~~ 159 (481)
T PLN02554 156 LYDE 159 (481)
T ss_pred hccc
Confidence 6544
No 11
>PLN02534 UDP-glycosyltransferase
Probab=99.87 E-value=2.7e-21 Score=166.79 Aligned_cols=144 Identities=25% Similarity=0.462 Sum_probs=102.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC-----CCCCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP-----DGLPPSDRD 81 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-----~~~~~~~~~ 81 (185)
.+.|++++|+|++||++||++||+.|++||+.||+++++.+..++..........+ ..++|+.+| +++|++. .
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~-~~i~~~~lp~p~~~dglp~~~-~ 84 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESG-LPIRLVQIPFPCKEVGLPIGC-E 84 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccC-CCeEEEEcCCCCccCCCCCCc-c
Confidence 34799999999999999999999999999999999999987654432211000001 138898887 3555431 1
Q ss_pred CCCC-----HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhh
Q 029948 82 ATQD-----LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQ 156 (185)
Q Consensus 82 ~~~~-----~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~ 156 (185)
...+ +...+......+.+.+++++++. . ++++|||+|++++|+.++|+++|||++.|++++++.++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~---~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~ 159 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQA---K--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHN 159 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhc---C--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHH
Confidence 1111 11111122223467777777653 1 467999999999999999999999999999999999888765
Q ss_pred H
Q 029948 157 F 157 (185)
Q Consensus 157 ~ 157 (185)
+
T Consensus 160 ~ 160 (491)
T PLN02534 160 I 160 (491)
T ss_pred H
Confidence 4
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.87 E-value=4e-21 Score=165.32 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=105.0
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHH-hCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC----CCCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLH-SKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD----GLPPSDRD 81 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La-~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~----~~~~~~~~ 81 (185)
++.|++++|+|++||++|+++|||+|+ ++|++||+++++.+..++.+.. . ..++++++.+|. +++...
T Consensus 4 ~~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~-~----~~~~i~~~~lp~p~~~glp~~~-- 76 (481)
T PLN02992 4 TKPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKF-L----NSTGVDIVGLPSPDISGLVDPS-- 76 (481)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhcc-c----cCCCceEEECCCccccCCCCCC--
Confidence 357999999999999999999999998 7899999999997754442211 0 112588888874 222111
Q ss_pred CCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHH
Q 029948 82 ATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPELV 161 (185)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~ 161 (185)
.+....+......+.+.++++++++. .+++|||+|++++|+.++|+++|||++.|++++++.++++.|+|.+.
T Consensus 77 --~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~ 149 (481)
T PLN02992 77 --AHVVTKIGVIMREAVPTLRSKIAEMH-----QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLD 149 (481)
T ss_pred --ccHHHHHHHHHHHhHHHHHHHHHhcC-----CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhc
Confidence 11211222222344678888887641 36899999999999999999999999999999999999999988653
No 13
>PLN00164 glucosyltransferase; Provisional
Probab=99.87 E-value=5.4e-21 Score=164.99 Aligned_cols=146 Identities=20% Similarity=0.250 Sum_probs=107.1
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCC----CeEEEEcCCcchh----hhhcccCCCCCCCCCCeeEEecCCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKG----FHVTFVNTEFNHN----RFIRNKGPDSLKGLPDFRFETIPDGLPPS 78 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rG----h~Vt~it~~~~~~----~~~~~~~~~~~~~~~~i~~~~l~~~~~~~ 78 (185)
.+.|++++|||++||++||++||++|++|| +.|||++++.+.. ++........ .....++++.+|.+..+.
T Consensus 2 ~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 2 AAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREA-ASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcc-cCCCCEEEEECCCCCCCC
Confidence 367999999999999999999999999997 7999999875421 2211100000 001258999998643211
Q ss_pred CCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHH
Q 029948 79 DRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (185)
+ ..+...++....+.+.+.++++++++. .+++|||+|++++|+.++|+++|||++.|++++++.+++++|+|
T Consensus 81 ~---~e~~~~~~~~~~~~~~~~l~~~L~~l~-----~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 81 D---AAGVEEFISRYIQLHAPHVRAAIAGLS-----CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred c---cccHHHHHHHHHHhhhHHHHHHHHhcC-----CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 1 123334444344456788888887651 35799999999999999999999999999999999999999998
Q ss_pred HHH
Q 029948 159 ELV 161 (185)
Q Consensus 159 ~l~ 161 (185)
.+.
T Consensus 153 ~~~ 155 (480)
T PLN00164 153 ALD 155 (480)
T ss_pred hhc
Confidence 653
No 14
>PLN02207 UDP-glycosyltransferase
Probab=99.87 E-value=6.2e-21 Score=163.72 Aligned_cols=152 Identities=16% Similarity=0.237 Sum_probs=102.8
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKG--FHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQD 85 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (185)
+.|++++|+|++||++||++||++|++|| ..||+++++.+.....++.........+.++|+.+|+..+........+
T Consensus 3 ~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~~~ 82 (468)
T PLN02207 3 NAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGTQS 82 (468)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccccC
Confidence 57999999999999999999999999998 9999999886542111110000001123599999985321111111223
Q ss_pred HHHHHHHHHHhCcH----HHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHH
Q 029948 86 LPALCSSIRKTCLA----PFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPELV 161 (185)
Q Consensus 86 ~~~~~~~~~~~~~~----~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~ 161 (185)
....+....+.+.+ .+++++++....+ ++++|||+|++++|+.++|+++|||.+.|++++++.+++++++|.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 83 VEAYVYDVIEKNIPLVRNIVMDILSSLALDG--VKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHhccCC--CCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 43333222233433 4455554431111 24599999999999999999999999999999999999999988653
No 15
>PLN00414 glycosyltransferase family protein
Probab=99.86 E-value=7.2e-21 Score=162.79 Aligned_cols=135 Identities=23% Similarity=0.269 Sum_probs=95.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC----CCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP----DGLPPSDRDAT 83 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~~ 83 (185)
+.|++++|+|++||++||++|||.|++||+.||+++++.+...+... +. ..+.+++..++ +++|++ ....
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~-~~----~~~~i~~~~i~lP~~dGLP~g-~e~~ 77 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPL-NL----FPDSIVFEPLTLPPVDGLPFG-AETA 77 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhccc-cc----CCCceEEEEecCCCcCCCCCc-cccc
Confidence 57999999999999999999999999999999999998876555221 10 11247775543 344443 1111
Q ss_pred CCHHH----HHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhh
Q 029948 84 QDLPA----LCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQ 156 (185)
Q Consensus 84 ~~~~~----~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~ 156 (185)
.++.. .+......+.+.++++++. .++||||+|+ ++|+.++|+++|||++.|++++++.+++++|
T Consensus 78 ~~l~~~~~~~~~~a~~~l~~~l~~~L~~-------~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~ 146 (446)
T PLN00414 78 SDLPNSTKKPIFDAMDLLRDQIEAKVRA-------LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA 146 (446)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc-------CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC
Confidence 12211 1111122234555555543 3579999995 8999999999999999999999999999887
No 16
>PLN03004 UDP-glycosyltransferase
Probab=99.86 E-value=1.7e-20 Score=160.48 Aligned_cols=149 Identities=17% Similarity=0.228 Sum_probs=103.0
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEE--EcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCC-CCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKG--FHVTF--VNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPS-DRDA 82 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rG--h~Vt~--it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~ 82 (185)
+.|++++|+|++||++||++|||+|++|| +.||+ +++..+.....+. ........++++++.+|.+.+.+ ....
T Consensus 3 ~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 3 EEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATY-ISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhh-hccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 56999999999999999999999999998 45555 4454432221110 00000112469999998654321 1111
Q ss_pred CCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHHHH
Q 029948 83 TQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFPEL 160 (185)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l 160 (185)
..+....+......+.+.++++++++.. . ++++|||+|++++|+.++|+++|||.+.|++++++.+++++|+|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~--~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~ 156 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSR-N--FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTI 156 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCC-C--CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhc
Confidence 1222222222233457788888887632 1 3569999999999999999999999999999999999999998854
No 17
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.85 E-value=1.5e-20 Score=162.54 Aligned_cols=144 Identities=25% Similarity=0.392 Sum_probs=95.0
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCC---CCCC-CCeeEEecC---CCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDS---LKGL-PDFRFETIP---DGLPPSD 79 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~---~~~~-~~i~~~~l~---~~~~~~~ 79 (185)
++.||+++|+|++||++|+++||++|++||++||+++++.+...+.+. +... ..+. ..+....+| .++|.+.
T Consensus 4 ~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~-~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 4 EKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKP-IEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhh-hhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 357999999999999999999999999999999999999877554221 1100 0000 023344444 2344321
Q ss_pred --CCC---C--CCHHHHHHHHH---HhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchH
Q 029948 80 --RDA---T--QDLPALCSSIR---KTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 80 --~~~---~--~~~~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~ 149 (185)
... . .....++..+. ..+.+.+++++++ .++||||+|.+++|+.++|+++|||+++||+++++
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~-------~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~ 155 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLET-------TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYF 155 (482)
T ss_pred ccccccccccccchHHHHHHHHHHHHHHHHHHHHHHhc-------CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHH
Confidence 100 0 01112222222 1223344444432 36899999999999999999999999999999999
Q ss_pred HHHHHhhHH
Q 029948 150 GFLAASQFP 158 (185)
Q Consensus 150 ~~~~~~~~~ 158 (185)
..++++++.
T Consensus 156 ~~~~~~~~~ 164 (482)
T PLN03007 156 SLCASYCIR 164 (482)
T ss_pred HHHHHHHHH
Confidence 888776553
No 18
>PLN03015 UDP-glucosyl transferase
Probab=99.85 E-value=3e-20 Score=159.34 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=105.2
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCC-CCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSD-RDATQD 85 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~-~~~~~~ 85 (185)
+.|++++|+|++||++||++||+.|+++ |..||++++...................+.|+++.+|....++- ......
T Consensus 3 ~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~~ 82 (470)
T PLN03015 3 QPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDATI 82 (470)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCccH
Confidence 4599999999999999999999999987 99999998776543321110011000112589999885221110 000112
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCC-cEEEcccchHHHHHHhhHHHHH
Q 029948 86 LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIP-DVQLWTASACGFLAASQFPELV 161 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP-~i~~~~~~~~~~~~~~~~~~l~ 161 (185)
...++.. .+.+.+.++++++++. .+++|||+|++++|+.++|+++||| .+.|++++++..++++|+|.++
T Consensus 83 ~~~~~~~-~~~~~~~~~~~l~~l~-----~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~ 153 (470)
T PLN03015 83 FTKMVVK-MRAMKPAVRDAVKSMK-----RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLD 153 (470)
T ss_pred HHHHHHH-HHhchHHHHHHHHhcC-----CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhh
Confidence 2223333 3456788999998753 3579999999999999999999999 5899999999999999998764
No 19
>PLN02208 glycosyltransferase family protein
Probab=99.85 E-value=2.9e-20 Score=158.90 Aligned_cols=137 Identities=22% Similarity=0.314 Sum_probs=97.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC----CCCCCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP----DGLPPSDRDA 82 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~----~~~~~~~~~~ 82 (185)
.+.|++++|+|++||++|+++|||+|++||++||+++++.+...+. +.+. ....+++..++ +++|++ ...
T Consensus 3 ~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~-~~~a----~~~~i~~~~l~~p~~dgLp~g-~~~ 76 (442)
T PLN02208 3 PKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLE-HHNL----FPDSIVFHPLTIPPVNGLPAG-AET 76 (442)
T ss_pred CCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhh-cccC----CCCceEEEEeCCCCccCCCCC-ccc
Confidence 4689999999999999999999999999999999999888766552 2121 01246666553 234432 111
Q ss_pred CCCHH----HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHH
Q 029948 83 TQDLP----ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 83 ~~~~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (185)
..++. .++......+.+.+++++++ .++||||+| +++|+.++|+++|||++.||+++++.++ ++|++
T Consensus 77 ~~~l~~~l~~~~~~~~~~~~~~l~~~L~~-------~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~ 147 (442)
T PLN02208 77 TSDIPISMDNLLSEALDLTRDQVEAAVRA-------LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVP 147 (442)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhh-------CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccC
Confidence 22222 12222222345666666654 267999999 5899999999999999999999998765 77765
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.85 E-value=4.4e-20 Score=159.32 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=99.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCC---eEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCC-CCCCCCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGF---HVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGL-PPSDRDA 82 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh---~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~-~~~~~~~ 82 (185)
.+.|++++|+|++||++||++|||+|++||. .||++++..+.....+........+.++|+|+.+|.+. +.+....
T Consensus 2 ~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~~ 81 (475)
T PLN02167 2 KEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMELF 81 (475)
T ss_pred CccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCcccccc
Confidence 3679999999999999999999999999994 56666644321100000000000112469999998643 2110000
Q ss_pred CCCH-HHHHHHHHHhCcHHHHHHHHHHhhC--CCCC-CceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhhHH
Q 029948 83 TQDL-PALCSSIRKTCLAPFLELLGKLNSA--GNVP-QVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 83 ~~~~-~~~~~~~~~~~~~~~~~ll~~l~~~--~~~~-~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (185)
.... ..+.. ....+.+.++++++++... ...+ +++|||+|++++|+.++|+++|||++.|++++++.+++++++|
T Consensus 82 ~~~~~~~~~~-~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 82 VKASEAYILE-FVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred ccchHHHHHH-HHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 1111 12222 2233456677776665311 0002 4699999999999999999999999999999999999999988
Q ss_pred HH
Q 029948 159 EL 160 (185)
Q Consensus 159 ~l 160 (185)
..
T Consensus 161 ~~ 162 (475)
T PLN02167 161 ER 162 (475)
T ss_pred Hh
Confidence 64
No 21
>PLN02764 glycosyltransferase family protein
Probab=99.84 E-value=8.2e-20 Score=156.08 Aligned_cols=137 Identities=25% Similarity=0.332 Sum_probs=98.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC--CCCCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP--DGLPPSDRDATQD 85 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~--~~~~~~~~~~~~~ 85 (185)
+.||+++|+|++||++||++||+.|++||+.||+++++.+...+. .. +.......+++..+| +++|++. ....+
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~-~~--~~~~~~~~v~~~~~p~~~glp~g~-e~~~~ 80 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLE-HL--NLFPHNIVFRSVTVPHVDGLPVGT-ETVSE 80 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhc-cc--ccCCCCceEEEEECCCcCCCCCcc-ccccc
Confidence 589999999999999999999999999999999999998755442 21 000000126666676 4555431 11111
Q ss_pred HH----HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHHHhh
Q 029948 86 LP----ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLAASQ 156 (185)
Q Consensus 86 ~~----~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~ 156 (185)
+. ..+......+.+.++++++++ +++|||+|+ ++|+.++|+++|||++.|++++++.++++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~~~~~~l~~~-------~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~ 147 (453)
T PLN02764 81 IPVTSADLLMSAMDLTRDQVEVVVRAV-------EPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV 147 (453)
T ss_pred CChhHHHHHHHHHHHhHHHHHHHHHhC-------CCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc
Confidence 11 112222234467888888652 579999995 8999999999999999999999999999864
No 22
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.67 E-value=2.2e-16 Score=133.08 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=87.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCC--CCCC----
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPS--DRDA---- 82 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~--~~~~---- 82 (185)
|||+|++.|+.||++|+++|+++|++|||+|++++++.....+ +. .+++|..++.+.+.. ....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v-~~---------~G~~~~~~~~~~~~~~~~~~~~~~~ 70 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLV-EA---------AGLEFVPVGGDPDELLASPERNAGL 70 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHH-HH---------cCCceeeCCCCHHHHHhhhhhcccc
Confidence 6999999999999999999999999999999999999876655 33 347777776432110 0000
Q ss_pred -CCC---HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccch
Q 029948 83 -TQD---LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 83 -~~~---~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
... .......+.......++++++.+.. .++|+||+|.+..++..+|+++|||++.+++++.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~ 136 (401)
T cd03784 71 LLLGPGLLLGALRLLRREAEAMLDDLVAAARD----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPD 136 (401)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccC
Confidence 001 1111122222223444555544322 4799999999888899999999999999888764
No 23
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.60 E-value=7.6e-15 Score=123.66 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=81.8
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCC-CCCC--CCCHHHHH
Q 029948 14 LPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPS-DRDA--TQDLPALC 90 (185)
Q Consensus 14 ~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~-~~~~--~~~~~~~~ 90 (185)
+.+|+.||++|+++||++|.+|||+|++++++.+.+.+ +. .++++..++...+.. .... ..+....+
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v-~~---------~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERV-EA---------AGAEFVLYGSALPPPDNPPENTEEEPIDII 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHH-HH---------cCCEEEecCCcCccccccccccCcchHHHH
Confidence 35799999999999999999999999999999888766 33 247777776533221 1100 01222233
Q ss_pred HHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccc
Q 029948 91 SSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 91 ~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~ 147 (185)
+.+...+...+.++.+.+.+ .++|+||+|.++.|+..+|+++|||+|.+++..
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~ 123 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKG----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTF 123 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhh
Confidence 33222222333444433322 479999999998899999999999999887643
No 24
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.35 E-value=1.2e-13 Score=100.08 Aligned_cols=126 Identities=19% Similarity=0.274 Sum_probs=76.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHH
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALC 90 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~ 90 (185)
|+|.+.|+.||++|++.|+++|.+|||+|++.+.+...+.+ +. .+++|+.++.+. . ...........
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v-~~---------~Gl~~~~~~~~~-~--~~~~~~~~~~~ 67 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERV-EA---------AGLEFVPIPGDS-R--LPRSLEPLANL 67 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHH-HH---------TT-EEEESSSCG-G--GGHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceecc-cc---------cCceEEEecCCc-C--cCcccchhhhh
Confidence 68999999999999999999999999999999999988777 43 358999986430 0 00000010000
Q ss_pred HHHHHh--CcHHHHHHHHHHhh-----CCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchH
Q 029948 91 SSIRKT--CLAPFLELLGKLNS-----AGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 91 ~~~~~~--~~~~~~~ll~~l~~-----~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~ 149 (185)
....+. ....+.+.++.... .......|+++.+.....+..+|+++|||++.....+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 68 RRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred hhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 000000 00111222222111 000124667778887777889999999999987766543
No 25
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=99.10 E-value=7.5e-11 Score=102.11 Aligned_cols=149 Identities=32% Similarity=0.435 Sum_probs=87.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCC---CCCCeeEEecCCCCCCCCCCCCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLK---GLPDFRFETIPDGLPPSDRDATQ 84 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~ 84 (185)
+.+++++++|++||++|+..+|++|+++||+||++++.......... ...... +.....+...+++.+........
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKS-SKSKSIKKINPPPFEFLTIPDGLPEGWEDDDL 83 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCc-ccceeeeeeecChHHhhhhhhhhccchHHHHH
Confidence 57899999999999999999999999999999999988765433111 000000 00001111111111111000000
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhC-CCcEEEcccchHHHHHHhhHH
Q 029948 85 DLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILG-IPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lg-iP~i~~~~~~~~~~~~~~~~~ 158 (185)
............+...+++....+.... ..++|++|+|.+..|...++.+.+ ++...+++..+...++..+.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~ 157 (496)
T KOG1192|consen 84 DISESLLELNKTCEDLLRDPLEKLLLLK-SEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSP 157 (496)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHhh-cCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCc
Confidence 0111112222333444444333322111 124999999999888888888775 999999999988888777655
No 26
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=99.05 E-value=2.3e-09 Score=93.56 Aligned_cols=129 Identities=11% Similarity=0.181 Sum_probs=78.5
Q ss_pred CceEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCC-------CC
Q 029948 8 KQHVIVL-PYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPP-------SD 79 (185)
Q Consensus 8 ~~~il~~-~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~-------~~ 79 (185)
..||+.+ |.++.||+.-+.+++++|++|||+||++++..... .... ...+++...++...+. .+
T Consensus 20 ~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~-~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (507)
T PHA03392 20 AARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVY-YASH-------LCGNITEIDASLSVEYFKKLVKSSA 91 (507)
T ss_pred cccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccc-cccC-------CCCCEEEEEcCCChHHHHHHHhhhh
Confidence 4578855 88999999999999999999999999997754211 1000 1134555554311000 00
Q ss_pred -CCC---CCCHHH----HHHHHHHhC-----cHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHh-CCCcEEEcc
Q 029948 80 -RDA---TQDLPA----LCSSIRKTC-----LAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARIL-GIPDVQLWT 145 (185)
Q Consensus 80 -~~~---~~~~~~----~~~~~~~~~-----~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~l-giP~i~~~~ 145 (185)
... ..+... .+......| .+.+.+++++ .. .+||+||+|.+..++..+|+++ |+|.|.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~---~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss 166 (507)
T PHA03392 92 VFRKRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIAN---KN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISS 166 (507)
T ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhc---CC--CceeEEEecccchhHHHHHHHhCCCCEEEEcC
Confidence 000 000000 111111122 3455555531 11 4799999999999888899999 999988877
Q ss_pred cchH
Q 029948 146 ASAC 149 (185)
Q Consensus 146 ~~~~ 149 (185)
+...
T Consensus 167 ~~~~ 170 (507)
T PHA03392 167 GYGL 170 (507)
T ss_pred CCCc
Confidence 6554
No 27
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=98.90 E-value=3.1e-11 Score=104.76 Aligned_cols=125 Identities=26% Similarity=0.397 Sum_probs=58.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCC-CCCCH-
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRD-ATQDL- 86 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~-~~~~~- 86 (185)
.||+++|. +.||+.++..++++|++|||+||++++.... ..... ....+++..++.+.+..... .....
T Consensus 1 ~kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (500)
T PF00201_consen 1 GKVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSS-SLNPS-------KPSNIRFETYPDPYPEEEFEEIFPEFI 71 (500)
T ss_dssp ------------SHHHHHHHHHHHHHH-TTSEEEHHHHHH-T-------------S-CCEEEE-----TT------TTHH
T ss_pred CEEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeeccc-ccccc-------cccceeeEEEcCCcchHHHhhhhHHHH
Confidence 37888885 6799999999999999999999999875432 22111 11346666665433221111 00110
Q ss_pred -------------HHHHHH-------HHHhCcHHH--HHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEc
Q 029948 87 -------------PALCSS-------IRKTCLAPF--LELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 87 -------------~~~~~~-------~~~~~~~~~--~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~ 144 (185)
...+.. ....|+..+ +++++.+++ .++|++|.|.+.+|+..+|+.+|+|.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~ 147 (500)
T PF00201_consen 72 SKFFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS----EKFDLVISDAFDPCGLALAHYLGIPVIIIS 147 (500)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH----HHHCT-EEEEEESSHHHHHHHHHHTHHHHH
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----hccccceEeeccchhHHHHHHhcCCeEEEe
Confidence 001111 011121111 112222222 269999999999999999999999998765
Q ss_pred cc
Q 029948 145 TA 146 (185)
Q Consensus 145 ~~ 146 (185)
+.
T Consensus 148 s~ 149 (500)
T PF00201_consen 148 SS 149 (500)
T ss_dssp HC
T ss_pred cc
Confidence 43
No 28
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.72 E-value=2.8e-08 Score=84.61 Aligned_cols=45 Identities=22% Similarity=0.389 Sum_probs=42.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFI 52 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~ 52 (185)
++||+++..|..||++|++.||++|.++||+|++++++.+.+.+.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve 45 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVE 45 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHH
Confidence 479999999999999999999999999999999999999988774
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=98.69 E-value=3.2e-07 Score=74.96 Aligned_cols=122 Identities=20% Similarity=0.231 Sum_probs=71.5
Q ss_pred ceEEEEcCC-CCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC-CCCCCCCCCCCCH
Q 029948 9 QHVIVLPYP-SQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD-GLPPSDRDATQDL 86 (185)
Q Consensus 9 ~~il~~~~p-~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~ 86 (185)
|||++...+ |.||+.-.+.|+++| |||+|++++.....+.+ .. .+....++. ..... .......
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~-~~----------~~~~~~~~~~~~~~~-~~~~~~~ 66 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFL-KP----------RFPVREIPGLGPIQE-NGRLDRW 66 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHh-cc----------ccCEEEccCceEecc-CCccchH
Confidence 688877665 779999999999999 69999999987554333 11 133333332 11110 0011111
Q ss_pred HHHHHHH--HHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchH
Q 029948 87 PALCSSI--RKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 87 ~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~ 149 (185)
....... .......++++.+.+.. .+||+||+|. .+.+...|+..|+|++.+......
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~l~~----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~ 126 (318)
T PF13528_consen 67 KTVRNNIRWLARLARRIRREIRWLRE----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWF 126 (318)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHh----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHc
Confidence 1111111 00112334444444432 4799999995 445678899999999977665533
No 30
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=98.52 E-value=1.2e-06 Score=72.23 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=66.0
Q ss_pred eEEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCee-EEecCC-CCCCCCCCCCCCH
Q 029948 10 HVIVL-PYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFR-FETIPD-GLPPSDRDATQDL 86 (185)
Q Consensus 10 ~il~~-~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~-~~~l~~-~~~~~~~~~~~~~ 86 (185)
||++. ...|.||+.|.++++++|.+ ||+|+++++.... ...+..+ +. +...|. .... .+..-+.
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~-~~~~~~~---------~~~~~~~p~~~~~~--~~~~~~~ 67 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSK-NYISKYG---------FKVFETFPGIKLKG--EDGKVNI 67 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHH-Hhhhhhc---------CcceeccCCceEee--cCCcCcH
Confidence 46664 44555999999999999999 9999999877633 3322211 22 222221 0100 0001111
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccc
Q 029948 87 PALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~ 147 (185)
..............+.+..+-+.+ .+||+||.| +...+..+|+.+|||++.+.-+.
T Consensus 68 ~~~l~~~~~~~~~~~~~~~~~l~~----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~ 123 (321)
T TIGR00661 68 VKTLRNKEYSPKKAIRREINIIRE----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQN 123 (321)
T ss_pred HHHHHhhccccHHHHHHHHHHHHh----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecch
Confidence 111111001101223333333322 479999999 55566889999999999655433
No 31
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.17 E-value=5.6e-05 Score=63.26 Aligned_cols=117 Identities=13% Similarity=0.147 Sum_probs=71.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh-hhhcccCCCCCCCCCCeeEEecCC-CCCCCCCCCCCCHH
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN-RFIRNKGPDSLKGLPDFRFETIPD-GLPPSDRDATQDLP 87 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~-~~~~~~~~~~~~~~ 87 (185)
+|++..+++.||+.|.+.++++|.++||+|.++++....+ .+.. ..++.+..++. ++. ....+.
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~---------~~g~~~~~~~~~~l~-----~~~~~~ 68 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIE---------KENIPYYSISSGKLR-----RYFDLK 68 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCc---------ccCCcEEEEeccCcC-----CCchHH
Confidence 6788888888999999999999999999999998665332 1111 12466666642 111 111222
Q ss_pred HHHHHHHHhCcH--HHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEcccch
Q 029948 88 ALCSSIRKTCLA--PFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 88 ~~~~~~~~~~~~--~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~~~ 148 (185)
. +......... ....++++ .+||+||....... +...|+.+|+|++.......
T Consensus 69 ~-~~~~~~~~~~~~~~~~i~~~-------~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~~ 125 (352)
T PRK12446 69 N-IKDPFLVMKGVMDAYVRIRK-------LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDMT 125 (352)
T ss_pred H-HHHHHHHHHHHHHHHHHHHh-------cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCCC
Confidence 1 1221111111 12223443 47999997554433 35678889999998766553
No 32
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.95 E-value=0.00018 Score=60.39 Aligned_cols=123 Identities=22% Similarity=0.293 Sum_probs=72.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHH
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGF-HVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLP 87 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh-~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (185)
++|++..+++.||+.|-+.|+++|.++|+ +|.++.+....+.... ....+.++.++..-..+. .....+.
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~--------~~~~~~~~~I~~~~~~~~-~~~~~~~ 71 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLV--------KQYGIEFELIPSGGLRRK-GSLKLLK 71 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeec--------cccCceEEEEeccccccc-CcHHHHH
Confidence 36788888999999999999999999999 5777755443322211 112567777754221111 0011122
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEe-CCccch-HHHHHHHhCCCcEEEcccchH
Q 029948 88 ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVS-DGIMGF-GAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~-D~~~~~-~~~vA~~lgiP~i~~~~~~~~ 149 (185)
..+..+.. .-..+.++++ .+||+||. ..+... +...|..+|||.+.--.....
T Consensus 72 ~~~~~~~~--~~~a~~il~~-------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~ 126 (357)
T COG0707 72 APFKLLKG--VLQARKILKK-------LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVP 126 (357)
T ss_pred HHHHHHHH--HHHHHHHHHH-------cCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCc
Confidence 22222111 1344556655 47999996 444444 345678889999986665443
No 33
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=97.76 E-value=0.00084 Score=55.20 Aligned_cols=115 Identities=23% Similarity=0.219 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHH
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPA 88 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (185)
+||++++++..||+.....|+++|.++||+|++++.+.... . .- ....+++++.++..... ..+...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~-~-~~------~~~~g~~~~~i~~~~~~-----~~~~~~ 67 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLE-K-RL------VPKAGIEFYFIPVGGLR-----RKGSFR 67 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcch-h-cc------cccCCCceEEEeccCcC-----CCChHH
Confidence 48999999999999977899999999999999998643211 0 00 00124566655421100 111211
Q ss_pred HHHHHHHh--CcHHHHHHHHHHhhCCCCCCceEEEeCCccc-h-HHHHHHHhCCCcEEE
Q 029948 89 LCSSIRKT--CLAPFLELLGKLNSAGNVPQVTCVVSDGIMG-F-GAKAARILGIPDVQL 143 (185)
Q Consensus 89 ~~~~~~~~--~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~-~-~~~vA~~lgiP~i~~ 143 (185)
.+...... ....+.+++++ .+||+|+...... + +..+++..|+|++.+
T Consensus 68 ~l~~~~~~~~~~~~l~~~i~~-------~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~ 119 (348)
T TIGR01133 68 LIKTPLKLLKAVFQARRILKK-------FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHH 119 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------cCCCEEEEcCCcccHHHHHHHHHcCCCEEEE
Confidence 11111110 01233444443 4799999764332 2 344677889999854
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.71 E-value=0.0007 Score=55.73 Aligned_cols=113 Identities=28% Similarity=0.290 Sum_probs=66.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCC-CCCCCCCCCCCHH-
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDG-LPPSDRDATQDLP- 87 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~-~~~~~~~~~~~~~- 87 (185)
+|++...+..||......|++.|.++||+|++++...... . .. ....++++..++.. ... ...+.
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~-~-~~------~~~~~~~~~~~~~~~~~~-----~~~~~~ 67 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLE-A-RL------VPKAGIPLHTIPVGGLRR-----KGSLKK 67 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcch-h-hc------ccccCCceEEEEecCcCC-----CChHHH
Confidence 5888888888999999999999999999999998754221 1 00 01123566655421 111 11111
Q ss_pred --HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCcc-c-hHHHHHHHhCCCcEEEc
Q 029948 88 --ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIM-G-FGAKAARILGIPDVQLW 144 (185)
Q Consensus 88 --~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~-~-~~~~vA~~lgiP~i~~~ 144 (185)
..+... .. ...+.+++++ .+||+|+..... . .+...+...|+|++...
T Consensus 68 ~~~~~~~~-~~-~~~~~~~i~~-------~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~ 119 (350)
T cd03785 68 LKAPFKLL-KG-VLQARKILKK-------FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHE 119 (350)
T ss_pred HHHHHHHH-HH-HHHHHHHHHh-------cCCCEEEECCCCcchHHHHHHHHhCCCEEEEc
Confidence 111111 10 1233444443 479999975422 2 24567788899998643
No 35
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=97.55 E-value=0.00088 Score=56.73 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+|++..+++.||+.|- .|+++|.++|++++++....
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg 42 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAG 42 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEcc
Confidence 57899999999999999 99999999999999998664
No 36
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=97.52 E-value=0.0031 Score=52.28 Aligned_cols=115 Identities=24% Similarity=0.296 Sum_probs=66.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHH
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPA 88 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~ 88 (185)
+||+++..+..||...++.|+++|.++||+|++++........ .. ...+++++.++.. . .........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~-~~-------~~~g~~~~~~~~~--~--~~~~~~~~~ 69 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEAR-LV-------PKAGIEFHFIPSG--G--LRRKGSLAN 69 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhh-cc-------ccCCCcEEEEecc--C--cCCCChHHH
Confidence 6899998888899999999999999999999999875521110 00 0124566655421 1 000111111
Q ss_pred HHHHHHHhC--cHHHHHHHHHHhhCCCCCCceEEEeCCc-cch-HHHHHHHhCCCcEEE
Q 029948 89 LCSSIRKTC--LAPFLELLGKLNSAGNVPQVTCVVSDGI-MGF-GAKAARILGIPDVQL 143 (185)
Q Consensus 89 ~~~~~~~~~--~~~~~~ll~~l~~~~~~~~~D~vI~D~~-~~~-~~~vA~~lgiP~i~~ 143 (185)
........ -..+.+++++ .+||+|+.... ..+ +..+++..++|.+..
T Consensus 70 -l~~~~~~~~~~~~~~~~ik~-------~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~ 120 (357)
T PRK00726 70 -LKAPFKLLKGVLQARKILKR-------FKPDVVVGFGGYVSGPGGLAARLLGIPLVIH 120 (357)
T ss_pred -HHHHHHHHHHHHHHHHHHHh-------cCCCEEEECCCcchhHHHHHHHHcCCCEEEE
Confidence 11111110 1233334433 47999997753 233 345567788999865
No 37
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=97.10 E-value=0.018 Score=48.48 Aligned_cols=115 Identities=13% Similarity=0.079 Sum_probs=60.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHH
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPAL 89 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (185)
||+|+.-..+ .++..||++|+++||+|+++|........ .+++.+.++....... ....+...
T Consensus 1 ~il~~~~~~p---~~~~~la~~L~~~G~~v~~~~~~~~~~~~------------~~v~~~~~~~~~~~~~--~~~~~~~~ 63 (396)
T cd03818 1 RILFVHQNFP---GQFRHLAPALAAQGHEVVFLTEPNAAPPP------------GGVRVVRYRPPRGPTS--GTHPYLRE 63 (396)
T ss_pred CEEEECCCCc---hhHHHHHHHHHHCCCEEEEEecCCCCCCC------------CCeeEEEecCCCCCCC--CCCccchh
Confidence 4566544333 34788999999999999999877643211 1366666542111110 11111111
Q ss_pred HHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHh-CCCcEEEc
Q 029948 90 CSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARIL-GIPDVQLW 144 (185)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~l-giP~i~~~ 144 (185)
+....... ..+.+.+..+...+ .+||+|+....++++..+.+.+ ++|.+.+.
T Consensus 64 ~~~~~~~~-~~~~~~~~~~~~~~--~~pdvi~~h~~~~~~~~l~~~~~~~~~v~~~ 116 (396)
T cd03818 64 FEEAVLRG-QAVARALLALRAKG--FRPDVIVAHPGWGETLFLKDVWPDAPLIGYF 116 (396)
T ss_pred HHHHHHHH-HHHHHHHHHHHhcC--CCCCEEEECCccchhhhHHHhCCCCCEEEEE
Confidence 11111111 12222222222222 4799999887666666777775 48888754
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.99 E-value=0.0081 Score=50.19 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
++|++..++..||+.|-. ++++|.++++++.++....
T Consensus 2 ~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~ 38 (380)
T PRK00025 2 LRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG 38 (380)
T ss_pred ceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc
Confidence 589999999999999998 9999999988888876544
No 39
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=96.20 E-value=0.14 Score=43.65 Aligned_cols=39 Identities=26% Similarity=0.237 Sum_probs=31.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+.++++++.+-.|+-.=+..+|+.|+++||+|++++...
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~ 41 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLE 41 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecC
Confidence 457777777767776667889999999999999998654
No 40
>PRK10307 putative glycosyl transferase; Provisional
Probab=96.07 E-value=0.11 Score=43.93 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=26.7
Q ss_pred ceEEEEcC---CCCC-ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPY---PSQG-HITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~---p~~G-H~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+||++++. |-.| =-.-+.+|+++|+++||+|+++|...
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~ 42 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPP 42 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCC
Confidence 57777763 2111 11235799999999999999999764
No 41
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=96.02 E-value=0.11 Score=41.71 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.|+-.-...|+++|+++||+|+++++...
T Consensus 15 gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 43 (359)
T cd03823 15 GGAEVVAHDLAEALAKRGHEVAVLTAGED 43 (359)
T ss_pred cchHHHHHHHHHHHHhcCCceEEEeCCCC
Confidence 48889999999999999999999987654
No 42
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.88 E-value=0.12 Score=39.06 Aligned_cols=95 Identities=12% Similarity=0.107 Sum_probs=53.8
Q ss_pred hCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCC
Q 029948 34 SKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGN 113 (185)
Q Consensus 34 ~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 113 (185)
++||+|+++|...... . .++++...+.. +............-++..... ...+.+.+.++.+.+
T Consensus 1 q~gh~v~fl~~~~~~~-~-----------~~GV~~~~y~~--~~~~~~~~~~~~~~~e~~~~r-g~av~~a~~~L~~~G- 64 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPP-I-----------PPGVRVVRYRP--PRGPTPGTHPYVRDFEAAVLR-GQAVARAARQLRAQG- 64 (171)
T ss_pred CCCCEEEEEecCCCCC-C-----------CCCcEEEEeCC--CCCCCCCCCcccccHHHHHHH-HHHHHHHHHHHHHcC-
Confidence 4799999999554322 1 03567666532 111001111111112222222 134444455555444
Q ss_pred CCCceEEEeCCccchHHHHHHHh-CCCcEEEcc
Q 029948 114 VPQVTCVVSDGIMGFGAKAARIL-GIPDVQLWT 145 (185)
Q Consensus 114 ~~~~D~vI~D~~~~~~~~vA~~l-giP~i~~~~ 145 (185)
-.||+||.-.-++.+..+-+.+ ++|.+.|.=
T Consensus 65 -f~PDvI~~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 65 -FVPDVIIAHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred -CCCCEEEEcCCcchhhhHHHhCCCCcEEEEEE
Confidence 6789999998888888899999 899987653
No 43
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.79 E-value=0.016 Score=41.42 Aligned_cols=98 Identities=23% Similarity=0.205 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHHHH
Q 029948 24 PMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCLAPFLE 103 (185)
Q Consensus 24 P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (185)
-+..|+++|+++||+|++++........ +. ...++++..++..... . .+.. ... ...+.+
T Consensus 6 ~~~~l~~~L~~~G~~V~v~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~-~-----~~~~-~~~-----~~~~~~ 65 (160)
T PF13579_consen 6 YVRELARALAARGHEVTVVTPQPDPEDD-EE-------EEDGVRVHRLPLPRRP-W-----PLRL-LRF-----LRRLRR 65 (160)
T ss_dssp HHHHHHHHHHHTT-EEEEEEE---GGG--SE-------EETTEEEEEE--S-SS-S-----GGGH-CCH-----HHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEecCCCCccc-cc-------ccCCceEEeccCCccc-h-----hhhh-HHH-----HHHHHH
Confidence 4678999999999999999865543321 11 0135777776521110 0 0000 000 022333
Q ss_pred HHHHHhhCCCCCCceEEEeCCcc-chHHHHHH-HhCCCcEEEccc
Q 029948 104 LLGKLNSAGNVPQVTCVVSDGIM-GFGAKAAR-ILGIPDVQLWTA 146 (185)
Q Consensus 104 ll~~l~~~~~~~~~D~vI~D~~~-~~~~~vA~-~lgiP~i~~~~~ 146 (185)
++.. .+ .++|+|.+-... .+...+++ +.++|.+.-.-.
T Consensus 66 ~l~~-~~----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 66 LLAA-RR----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp HCHH-CT-------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred HHhh-hc----cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 3311 11 479999865533 23344555 889999865544
No 44
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.67 E-value=0.17 Score=40.95 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 16 YPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 16 ~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
--|.||+.=++.||++|.++|++|+|++.....
T Consensus 11 ~iG~GHv~Rcl~LA~~l~~~g~~v~f~~~~~~~ 43 (279)
T TIGR03590 11 EIGLGHVMRCLTLARALHAQGAEVAFACKPLPG 43 (279)
T ss_pred cccccHHHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence 346799999999999999999999999876543
No 45
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=95.63 E-value=0.1 Score=43.57 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=44.2
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD 73 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 73 (185)
.+||+|++- .|-||+.=.+.+|+.|++. |.+|++++.......+.. ..+++++.+|.
T Consensus 9 ~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~---------~~gVd~V~LPs 69 (400)
T COG4671 9 RPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPG---------PAGVDFVKLPS 69 (400)
T ss_pred cceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCC---------cccCceEecCc
Confidence 359999986 5669999999999999998 999999987654433311 13688888874
No 46
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=95.46 E-value=0.52 Score=39.35 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=63.4
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCcch-hhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCc
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTEFNH-NRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCL 98 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~~~~-~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
.|++-+..+.++|.++||+|.+.+-+... ..+.+. .++.+..+...- . ..........
T Consensus 11 ~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~---------yg~~y~~iG~~g-~-------~~~~Kl~~~~---- 69 (335)
T PF04007_consen 11 AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDL---------YGIDYIVIGKHG-D-------SLYGKLLESI---- 69 (335)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHH---------cCCCeEEEcCCC-C-------CHHHHHHHHH----
Confidence 49999999999999999999987644321 122222 346666664311 1 1111111111
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHH
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACG 150 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~ 150 (185)
....++++-+.+ .+||++|+- ....+.-+|.-+|+|.|.|.=.....
T Consensus 70 ~R~~~l~~~~~~----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~ 116 (335)
T PF04007_consen 70 ERQYKLLKLIKK----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAI 116 (335)
T ss_pred HHHHHHHHHHHh----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhh
Confidence 222333333322 479999963 33556779999999999998765443
No 47
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.38 E-value=0.38 Score=33.96 Aligned_cols=103 Identities=11% Similarity=0.161 Sum_probs=59.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHH
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPAL 89 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 89 (185)
||++++-....| ...+++.|.++|++|++++.....+.... ..++.+..++.+. ...+. .
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~---------~~~i~~~~~~~~~-------k~~~~-~ 60 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEI---------IEGIKVIRLPSPR-------KSPLN-Y 60 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhH---------hCCeEEEEecCCC-------CccHH-H
Confidence 466666555445 56889999999999999998554322211 1457777764221 01111 1
Q ss_pred HHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccc-hH--HHHHHHhC-CCcEEEcc
Q 029948 90 CSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMG-FG--AKAARILG-IPDVQLWT 145 (185)
Q Consensus 90 ~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~-~~--~~vA~~lg-iP~i~~~~ 145 (185)
+. . . .+..++++ .+||+|.+-...+ +. ...+...| +|++....
T Consensus 61 ~~----~-~-~l~k~ik~-------~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 61 IK----Y-F-RLRKIIKK-------EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HH----H-H-HHHHHhcc-------CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 11 1 1 34555554 3799998655444 22 23557777 88874333
No 48
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=95.23 E-value=0.32 Score=39.25 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=29.8
Q ss_pred eEEEEcCCC----CCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVIVLPYPS----QGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p~----~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
||++++... .|+-.-...+++.|+++||+|++++....
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPN 42 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCC
Confidence 355554422 48999999999999999999999986653
No 49
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=95.08 E-value=0.54 Score=37.44 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=33.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
||++++....|+...+..+++.|.++||+|++++.....
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 467777777789999999999999999999999877543
No 50
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=94.95 E-value=0.25 Score=40.88 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.|+-..+..|++.|+++||+|++++...
T Consensus 21 GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 48 (398)
T cd03800 21 GGQNVYVLELARALARLGHEVDIFTRRI 48 (398)
T ss_pred CceeehHHHHHHHHhccCceEEEEEecC
Confidence 4788899999999999999999998654
No 51
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.64 E-value=0.88 Score=37.75 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.7
Q ss_pred ceEEEEcCC-C-CCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYP-S-QGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p-~-~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|||+++... + .|=-.-+..|+++|+++||+|+++|..
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~ 39 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSH 39 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 467766532 2 244456789999999999999999874
No 52
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=94.07 E-value=0.62 Score=37.52 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=29.7
Q ss_pred ceEEEEcCC--------CCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYP--------SQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p--------~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|||++++.. ..|--.-+..|++.|.++||+|++++...
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~ 46 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGD 46 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCC
Confidence 578877643 22555778999999999999999998654
No 53
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=93.94 E-value=2.1 Score=39.76 Aligned_cols=126 Identities=12% Similarity=0.174 Sum_probs=63.1
Q ss_pred ceEEEEcCCC-------------CCChHHHHHHHHH--------HHhCCC----eEEEEcCCcchhhhhcccC--CCCCC
Q 029948 9 QHVIVLPYPS-------------QGHITPMMQLAKL--------LHSKGF----HVTFVNTEFNHNRFIRNKG--PDSLK 61 (185)
Q Consensus 9 ~~il~~~~p~-------------~GH~~P~l~La~~--------La~rGh----~Vt~it~~~~~~~~~~~~~--~~~~~ 61 (185)
+||++++.-+ .|+..=.++++|+ |+++|| +|+++|-......- .... .....
T Consensus 256 ~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~~-~~~~~~~e~~~ 334 (784)
T TIGR02470 256 FNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAEG-TTCNQRLEKVY 334 (784)
T ss_pred ceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCccc-ccccccccccc
Confidence 6777665543 4677777888886 578999 77788743211000 0000 00012
Q ss_pred CCCCeeEEecCCCCCCC----CCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccc-h-HHHHHHH
Q 029948 62 GLPDFRFETIPDGLPPS----DRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMG-F-GAKAARI 135 (185)
Q Consensus 62 ~~~~i~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~-~-~~~vA~~ 135 (185)
..+++++..+|-+-+.. .+-...+ .+..+........+.+..+. . .+||+|+.....+ + +..++++
T Consensus 335 ~~~~~~I~rvp~g~~~~~~~~~~i~k~~---l~p~l~~f~~~~~~~~~~~~---~--~~pDlIHahy~d~glva~lla~~ 406 (784)
T TIGR02470 335 GTEHAWILRVPFRTENGIILRNWISRFE---IWPYLETFAEDAEKEILAEL---Q--GKPDLIIGNYSDGNLVASLLARK 406 (784)
T ss_pred CCCceEEEEecCCCCcccccccccCHHH---HHHHHHHHHHHHHHHHHHhc---C--CCCCEEEECCCchHHHHHHHHHh
Confidence 22466766665322111 0111111 22232222222233333221 1 4799999866443 3 4679999
Q ss_pred hCCCcEEE
Q 029948 136 LGIPDVQL 143 (185)
Q Consensus 136 lgiP~i~~ 143 (185)
+|||.+..
T Consensus 407 lgVP~v~t 414 (784)
T TIGR02470 407 LGVTQCTI 414 (784)
T ss_pred cCCCEEEE
Confidence 99996643
No 54
>PLN00142 sucrose synthase
Probab=93.88 E-value=0.74 Score=42.83 Aligned_cols=31 Identities=13% Similarity=0.195 Sum_probs=23.3
Q ss_pred CCceEEEeCCccc-h-HHHHHHHhCCCcEEEcc
Q 029948 115 PQVTCVVSDGIMG-F-GAKAARILGIPDVQLWT 145 (185)
Q Consensus 115 ~~~D~vI~D~~~~-~-~~~vA~~lgiP~i~~~~ 145 (185)
.+||+|+.....+ + |..+++++|||.+...-
T Consensus 407 ~~PDlIHaHYwdsg~vA~~La~~lgVP~v~T~H 439 (815)
T PLN00142 407 GKPDLIIGNYSDGNLVASLLAHKLGVTQCTIAH 439 (815)
T ss_pred CCCCEEEECCccHHHHHHHHHHHhCCCEEEEcc
Confidence 4799999775443 4 46799999999996544
No 55
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=93.25 E-value=1.1 Score=37.59 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|--.-...|++.|+++||+|++++..
T Consensus 15 G~e~~~~~la~~L~~~G~~V~v~~~~ 40 (398)
T cd03796 15 GVETHIYQLSQCLIKRGHKVVVITHA 40 (398)
T ss_pred cHHHHHHHHHHHHHHcCCeeEEEecc
Confidence 55578899999999999999999865
No 56
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=93.02 E-value=2 Score=36.02 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=25.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
..|--.-..+|+++|+++||+|++++...
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~ 47 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRAT 47 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEeccc
Confidence 34677889999999999999999998754
No 57
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=92.61 E-value=2.4 Score=40.63 Aligned_cols=26 Identities=23% Similarity=0.480 Sum_probs=22.3
Q ss_pred CChHHHHHHHHHHHhCC--CeEEEEcCC
Q 029948 20 GHITPMMQLAKLLHSKG--FHVTFVNTE 45 (185)
Q Consensus 20 GH~~P~l~La~~La~rG--h~Vt~it~~ 45 (185)
|+..=.++||++|+++| |+|+++|-.
T Consensus 196 Gq~vYV~ELAraLa~~~gv~~Vdl~TR~ 223 (1050)
T TIGR02468 196 GQVKYVVELARALGSMPGVYRVDLLTRQ 223 (1050)
T ss_pred ChHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 56677899999999998 899999843
No 58
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.55 E-value=0.16 Score=41.75 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=31.1
Q ss_pred ceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+||++++.|.. |.-.-..+|++.|+++||+|++++...
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 46777766444 778889999999999999999998754
No 59
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=92.52 E-value=1.5 Score=37.60 Aligned_cols=114 Identities=19% Similarity=0.261 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHhCCC--eEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhC
Q 029948 20 GHITPMMQLAKLLHSKGF--HVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTC 97 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh--~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (185)
|=-.-+.+|+++|+++|| +|+++|............+........+++++.++.. +.. .. ........+.. +
T Consensus 27 G~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~-~~~-~~---~~~~~~~~~~~-~ 100 (439)
T TIGR02472 27 GQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFG-PRR-YL---RKELLWPYLDE-L 100 (439)
T ss_pred CcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCC-CCC-Cc---ChhhhhhhHHH-H
Confidence 444667899999999997 9999995421100000000000001135666666421 110 10 11111111111 1
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEeCCcc-ch-HHHHHHHhCCCcEEEc
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVSDGIM-GF-GAKAARILGIPDVQLW 144 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~D~~~-~~-~~~vA~~lgiP~i~~~ 144 (185)
...+..++++. . .+||+|-+-... .+ +..+++.+|+|++...
T Consensus 101 ~~~l~~~~~~~---~--~~~DvIH~h~~~~~~~~~~~~~~~~~p~V~t~ 144 (439)
T TIGR02472 101 ADNLLQHLRQQ---G--HLPDLIHAHYADAGYVGARLSRLLGVPLIFTG 144 (439)
T ss_pred HHHHHHHHHHc---C--CCCCEEEEcchhHHHHHHHHHHHhCCCEEEec
Confidence 12333344321 1 369999975432 22 3457788999987543
No 60
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=92.30 E-value=0.19 Score=42.02 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=31.8
Q ss_pred CceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+||++++.... ||..+...|+++|.++||+|.++++.
T Consensus 4 ~~rili~t~~~G~GH~~~a~al~~~l~~~g~~~~~~~d~ 42 (380)
T PRK13609 4 NPKVLILTAHYGNGHVQVAKTLEQTFRQKGIKDVIVCDL 42 (380)
T ss_pred CCeEEEEEcCCCchHHHHHHHHHHHHHhcCCCcEEEEEh
Confidence 458998887655 99999999999999999987776543
No 61
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=91.85 E-value=3.4 Score=33.41 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCL 98 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (185)
.|--.-...|+++|+++||+|++++.........+. .+++++.++. ... ..+. .+.. .
T Consensus 10 gG~e~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~--~~~-----~~~~-~~~~-----~ 67 (355)
T cd03819 10 GGVERGTLELARALVERGHRSLVASAGGRLVAELEA---------EGSRHIKLPF--ISK-----NPLR-ILLN-----V 67 (355)
T ss_pred CcHHHHHHHHHHHHHHcCCEEEEEcCCCchHHHHHh---------cCCeEEEccc--ccc-----chhh-hHHH-----H
Confidence 366688899999999999999999865432221111 2355555431 110 0011 1111 1
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCc-cchH-HHHHHHhCCCcEEEcc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGI-MGFG-AKAARILGIPDVQLWT 145 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~-~~~~-~~vA~~lgiP~i~~~~ 145 (185)
..+..++++ .++|+|+.... ..|. ...++.+|+|++..+.
T Consensus 68 ~~l~~~~~~-------~~~dii~~~~~~~~~~~~~~~~~~~~~~i~~~h 109 (355)
T cd03819 68 ARLRRLIRE-------EKVDIVHARSRAPAWSAYLAARRTRPPFVTTVH 109 (355)
T ss_pred HHHHHHHHH-------cCCCEEEECCCchhHHHHHHHHhcCCCEEEEeC
Confidence 122333333 47999997543 3443 4466788999886444
No 62
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.73 E-value=0.45 Score=38.38 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=26.5
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.|+-+.+..|+++|.++||+|++++....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~~~~~~~~ 42 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHEVLVIAPGPF 42 (364)
T ss_pred cceehHHHHHHHHHHHCCCEEEEEeCCch
Confidence 58999999999999999999999987754
No 63
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=90.00 E-value=0.64 Score=40.19 Aligned_cols=41 Identities=20% Similarity=0.264 Sum_probs=31.8
Q ss_pred CCCceEEEEcCCC-----CCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 6 VTKQHVIVLPYPS-----QGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 6 ~~~~~il~~~~p~-----~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+.++||+++.-+. .|=-+-+..|++.|.++||+|++++...
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~ 101 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE 101 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 5679999885432 1333677899999999999999998754
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=89.43 E-value=4.4 Score=31.93 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=25.3
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
..|...-+..+++.|+++||+|++++....
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHEVTIISLDKG 41 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 346668889999999999999999987654
No 65
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=89.36 E-value=2.7 Score=35.76 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=57.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCe--EE--EEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFH--VT--FVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQ 84 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~--Vt--~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~ 84 (185)
.+++-+-..+.|.++-..+|+++|.+++++ |. ..|..+ .+...+..+ ..+.+..+|.+.+
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~~~~~~-------~~~~~~~~P~d~~-------- 113 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG-SERAQALFG-------DDVEHRYLPYDLP-------- 113 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHHHHhcC-------CCceEEEecCCcH--------
Confidence 455667778889999999999999998755 33 322222 222211100 1244444432111
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeC-C-ccchHHHHHHHhCCCcEEEcc
Q 029948 85 DLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSD-G-IMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D-~-~~~~~~~vA~~lgiP~i~~~~ 145 (185)
..++.+++.. +||+++.- . +++.....+++.|+|.+....
T Consensus 114 --------------~~~~~~l~~~-------~Pd~v~~~~~~~~~~~l~~~~~~~ip~vl~~~ 155 (425)
T PRK05749 114 --------------GAVRRFLRFW-------RPKLVIIMETELWPNLIAELKRRGIPLVLANA 155 (425)
T ss_pred --------------HHHHHHHHhh-------CCCEEEEEecchhHHHHHHHHHCCCCEEEEec
Confidence 2444556553 68988743 2 233345567889999987643
No 66
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=89.31 E-value=0.87 Score=31.65 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=34.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
|+++.+.++..|-..+.-++..|.++|++|..+...-..
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~ 39 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVDVPP 39 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCCCCH
Confidence 588999999999999999999999999999888655433
No 67
>PLN02275 transferase, transferring glycosyl groups
Probab=89.17 E-value=12 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.030 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGF-HVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh-~Vt~it~~~ 46 (185)
.++.++..+-.|.---+..+++.|+++|| +|++++...
T Consensus 5 ~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~ 43 (371)
T PLN02275 5 GRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGG 43 (371)
T ss_pred cEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecC
Confidence 35556666777888889999999999986 799997544
No 68
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=89.02 E-value=0.66 Score=37.72 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=32.2
Q ss_pred ceEEEEcCC-C-CCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYP-S-QGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p-~-~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|||+++... + .|+-.-...++++|.++||+|++++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~ 41 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK 41 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc
Confidence 578877653 3 58899999999999999999999986653
No 69
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=88.98 E-value=1.2 Score=32.24 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=40.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRN 54 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 54 (185)
++.++++.+.++.+|-.-..-++..|.++|++|+++...-..+.+.++
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~ 49 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDA 49 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 367899999999999999999999999999999999877655555433
No 70
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=88.42 E-value=0.54 Score=38.15 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=28.4
Q ss_pred EEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 11 VIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 11 il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|+++.. ...|+-.....|++.|.++||+|++++...
T Consensus 2 il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 2 ILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 454443 235889999999999999999999997543
No 71
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.39 E-value=8.4 Score=31.99 Aligned_cols=106 Identities=16% Similarity=0.182 Sum_probs=65.0
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCc-chhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHH-HHHHHHHHh
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEF-NHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLP-ALCSSIRKT 96 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~-~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~ 96 (185)
.-|++-+-.+.+.|..+||+|-+.+-+. ....+.+. -++++..+... + ...+. .+.....+
T Consensus 10 ~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~---------ygf~~~~Igk~---g----~~tl~~Kl~~~~eR- 72 (346)
T COG1817 10 PPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDL---------YGFPYKSIGKH---G----GVTLKEKLLESAER- 72 (346)
T ss_pred cchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHH---------hCCCeEeeccc---C----CccHHHHHHHHHHH-
Confidence 4688899999999999999998865332 22233233 24666665421 0 01122 11111111
Q ss_pred CcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHH
Q 029948 97 CLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACG 150 (185)
Q Consensus 97 ~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~ 150 (185)
.-.+.++..+ .+||+.|. -..+.+.-+|--+|+|.+.|.-..-+.
T Consensus 73 -~~~L~ki~~~-------~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA~ 117 (346)
T COG1817 73 -VYKLSKIIAE-------FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHAE 117 (346)
T ss_pred -HHHHHHHHhh-------cCCceEee-cCCcchhhHHhhcCCceEEecCChhHH
Confidence 1233444443 47899988 567778899999999999998766544
No 72
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=88.12 E-value=0.63 Score=33.48 Aligned_cols=28 Identities=29% Similarity=0.447 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|=-.-+..|+++|+++||+|++++....
T Consensus 13 G~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 13 GAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred hHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 6667899999999999999999976654
No 73
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=87.64 E-value=1 Score=36.21 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
...|+-.-...+++.|+++||+|+++++...
T Consensus 12 ~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (374)
T cd03817 12 QVNGVATSIRRLAEELEKRGHEVYVVAPSYP 42 (374)
T ss_pred CCCCeehHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4458999999999999999999999986653
No 74
>PRK00654 glgA glycogen synthase; Provisional
Probab=87.44 E-value=0.93 Score=39.27 Aligned_cols=37 Identities=16% Similarity=0.172 Sum_probs=28.5
Q ss_pred ceEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYP------SQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p------~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|||+++++- ..|.-.-.-.|+++|+++||+|+++++.
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~ 43 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG 43 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 467766643 2355577789999999999999999964
No 75
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=86.12 E-value=1.1 Score=31.90 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+||++...++.+=+. ..++.++|.++|++|+++.++...+.+
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~~A~~~~ 42 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSPSAERFV 42 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESHHHHHHS
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECCcHHHHh
Confidence 478888887755555 999999999999999999988766544
No 76
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=86.03 E-value=5.1 Score=30.03 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=21.0
Q ss_pred EEEcCCCCCChHHHHHHHHHH-HhCCCeEEEEc
Q 029948 12 IVLPYPSQGHITPMMQLAKLL-HSKGFHVTFVN 43 (185)
Q Consensus 12 l~~~~p~~GH~~P~l~La~~L-a~rGh~Vt~it 43 (185)
+++.+.| ||..-|+.|.+.+ .++....+++.
T Consensus 2 l~v~gsG-GHt~eml~L~~~~~~~~~~~~~~iv 33 (170)
T PF08660_consen 2 LVVLGSG-GHTAEMLRLLKALDNDRYQPRTYIV 33 (170)
T ss_pred EEEEcCc-HHHHHHHHHHHHhhhhcCCCcEEEE
Confidence 4444444 9999999999999 44444444443
No 77
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=85.69 E-value=1.4 Score=35.35 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
..|...-...|++.|+++||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (375)
T cd03821 13 YGGPVRVVLNLSKALAKLGHEVTVATTDAG 42 (375)
T ss_pred cCCeehHHHHHHHHHHhcCCcEEEEecCCC
Confidence 459999999999999999999999987654
No 78
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=85.45 E-value=1.7 Score=35.43 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=33.9
Q ss_pred ceEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 9 QHVIVLPYP----SQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 9 ~~il~~~~p----~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
|||+|++-+ |.||+.=++.||++|.++|..+++++......
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~~~fl~k~~~e~ 45 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFACLFLTKQDIEA 45 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCceEEEecccchhh
Confidence 567777654 56999999999999999999999998776433
No 79
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=85.09 E-value=1.8 Score=30.66 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYPSQG---HITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p~~G---H~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+||+|+-=|-.+ .-.....|+++.++|||+|.++.....
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL 42 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDL 42 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGE
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcE
Confidence 467777666654 346788999999999999999976653
No 80
>PLN02846 digalactosyldiacylglycerol synthase
Probab=85.01 E-value=1.5 Score=38.25 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=31.8
Q ss_pred CCceEEEEcC---CCC-CChHHHHHHHHHHHhCC-CeEEEEcCCc
Q 029948 7 TKQHVIVLPY---PSQ-GHITPMMQLAKLLHSKG-FHVTFVNTEF 46 (185)
Q Consensus 7 ~~~~il~~~~---p~~-GH~~P~l~La~~La~rG-h~Vt~it~~~ 46 (185)
+++||++++- |.. |=....+.++..|+++| |+|+++.+..
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~ 47 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWL 47 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCC
Confidence 4699999986 444 65577778888999999 8999998753
No 81
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=84.16 E-value=1.8 Score=37.44 Aligned_cols=37 Identities=19% Similarity=0.213 Sum_probs=28.3
Q ss_pred ceEEEEcCC------CCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYP------SQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p------~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|||+++++- ..|=-.-.-.|+++|+++||+|+++++.
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~ 43 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPA 43 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 577777753 2244466789999999999999999864
No 82
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=82.43 E-value=2.4 Score=33.48 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=30.3
Q ss_pred eEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVIVLPYP--SQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p--~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
||+++... ..|+-.-+..+++.|.++||+|++++....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~ 40 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDE 40 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCC
Confidence 34544443 568889999999999999999999987654
No 83
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=82.39 E-value=23 Score=29.33 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=38.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
+||+++-..+.|++.-..++.+.|.++ +.+|++++.+...+-+
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~ 45 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLL 45 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHH
Confidence 589999999999999999999999997 7999999987766544
No 84
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=82.32 E-value=18 Score=26.87 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
.-|.+++.+|.|=.+..+.+|-+.+.+|++|.++
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4578999999999999999999999999999984
No 85
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=81.87 E-value=4.1 Score=31.25 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=38.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.+.++++.+.++..|-....-++..|.++|++|+.+...-..+.+
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l 125 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEF 125 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 367999999999999999999999999999999988765444444
No 86
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=81.29 E-value=4.4 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.133 Sum_probs=40.4
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIR 53 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 53 (185)
.+.++++.+.++.-|-....-++..|.++|++|+++...-..+.+.+
T Consensus 83 ~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~ 129 (197)
T TIGR02370 83 VLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVE 129 (197)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHH
Confidence 45799999999999999999999999999999999987765555533
No 87
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=81.14 E-value=15 Score=33.22 Aligned_cols=48 Identities=17% Similarity=-0.007 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhCCCCCCceEEE-eCCcc--chHHHHHHHhCC--CcEEEcccchHH
Q 029948 99 APFLELLGKLNSAGNVPQVTCVV-SDGIM--GFGAKAARILGI--PDVQLWTASACG 150 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI-~D~~~--~~~~~vA~~lgi--P~i~~~~~~~~~ 150 (185)
...+++.+.+.+ .+||++| +|..- .-....+++.|+ |++.|.+-...+
T Consensus 297 ~~~~~l~~~i~~----~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsPqVWA 349 (608)
T PRK01021 297 YRYRKLYKTILK----TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCPSIWA 349 (608)
T ss_pred HHHHHHHHHHHh----cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee
Confidence 344555555543 4799888 68744 223456788896 998777665544
No 88
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=80.73 E-value=23 Score=30.59 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=66.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEc-CCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVN-TEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQD 85 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~ 85 (185)
.-.+-+-.-+.|=.+-..+|.++|.++ ++++++-| |+-..+.+.+..+ ..+.+.-+|-+.+
T Consensus 49 ~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~-------~~v~h~YlP~D~~--------- 112 (419)
T COG1519 49 GPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFG-------DSVIHQYLPLDLP--------- 112 (419)
T ss_pred CCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcC-------CCeEEEecCcCch---------
Confidence 456777778889999999999999999 78877766 3333334422222 2255555553221
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEE-eCC-ccchHHHHHHHhCCCcEEEcc
Q 029948 86 LPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVV-SDG-IMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI-~D~-~~~~~~~vA~~lgiP~i~~~~ 145 (185)
..++.+++.. +||++| ++. .++....-+++.|+|.+....
T Consensus 113 -------------~~v~rFl~~~-------~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNa 154 (419)
T COG1519 113 -------------IAVRRFLRKW-------RPKLLIIMETELWPNLINELKRRGIPLVLVNA 154 (419)
T ss_pred -------------HHHHHHHHhc-------CCCEEEEEeccccHHHHHHHHHcCCCEEEEee
Confidence 2445566653 677555 555 455567788999999998776
No 89
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=79.29 E-value=3.1 Score=35.79 Aligned_cols=26 Identities=23% Similarity=0.210 Sum_probs=21.4
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|=-.-.-.|+++|+++||+|+++++.
T Consensus 17 Gl~~~~~~L~~aL~~~G~~V~Vi~p~ 42 (476)
T cd03791 17 GLGDVVGALPKALAKLGHDVRVIMPK 42 (476)
T ss_pred cHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 33355678999999999999999964
No 90
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=79.21 E-value=3.8 Score=32.44 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
.|+-.-+..|++.|.+.||+|++++.....
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~ 43 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGG 43 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 688999999999999999999999876543
No 91
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.91 E-value=3.5 Score=30.65 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=24.6
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
..|+-.....|++.|.++||+|+++.
T Consensus 12 ~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 12 GGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 56999999999999999999999998
No 92
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=78.66 E-value=19 Score=31.32 Aligned_cols=104 Identities=22% Similarity=0.309 Sum_probs=57.9
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEc-CCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHH
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFVN-TEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSI 93 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~it-~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (185)
|.-+.|-..-.+.|+++|++||+.|.-+- .+.+-+ | .||..-.+.+..+.+ .| +
T Consensus 8 ~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYID--------------P--~~H~~atG~~srNLD---~~---m--- 62 (451)
T COG1797 8 TSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYID--------------P--GYHTAATGRPSRNLD---SW---M--- 62 (451)
T ss_pred CCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccC--------------c--hhhhHhhCCccCCCc---hh---h---
Confidence 44556889999999999999999886542 222211 1 233332233322221 11 1
Q ss_pred HHhCcHHHHHHHHHHhhCCCCCCceEEEeCCc------------cchHHHHHHHhCCCcEEEcccchHH
Q 029948 94 RKTCLAPFLELLGKLNSAGNVPQVTCVVSDGI------------MGFGAKAARILGIPDVQLWTASACG 150 (185)
Q Consensus 94 ~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~------------~~~~~~vA~~lgiP~i~~~~~~~~~ 150 (185)
...+.++++..+-. ...|+.|++.. .....++|+.+|+|+|.+.-....+
T Consensus 63 --m~~~~v~~~f~~~~-----~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s 124 (451)
T COG1797 63 --MGEEGVRALFARAA-----ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLS 124 (451)
T ss_pred --cCHHHHHHHHHHhc-----CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCCEEEEEeCcchh
Confidence 11345555554432 23444443321 2345899999999999877655444
No 93
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.55 E-value=3.8 Score=33.05 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=26.2
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
..|.-.-...|++.|.++||+|++++....
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 458888999999999999999999987654
No 94
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.49 E-value=5.3 Score=32.98 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=36.9
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
+...|.+.-.||.|--.-.-.|++.|.++||.|.++..++.++
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp 92 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSP 92 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCC
Confidence 3457778888999999999999999999999999998766554
No 95
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=78.46 E-value=6 Score=27.15 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|+++.+.+..-|-.-+.-++..|.++||+|.++-...
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~~~ 38 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDANV 38 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEESSB
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECCCC
Confidence 7889999999999999999999999999999985443
No 96
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=78.13 E-value=5.3 Score=27.99 Aligned_cols=42 Identities=19% Similarity=0.299 Sum_probs=36.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
|+++.+.++..|-.-..-++..|...|++|..+......+.+
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~ 42 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEI 42 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Confidence 689999999999999999999999999999999876544444
No 97
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=78.10 E-value=3.6 Score=33.35 Aligned_cols=28 Identities=29% Similarity=0.216 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|=-.-...|+++|.++||+|++++....
T Consensus 16 G~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 16 GFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred cHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 4457778999999999999999987643
No 98
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=77.81 E-value=5.8 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCceEEE-eCCcc-chHHHHHHHhCCCcEEEcccch
Q 029948 115 PQVTCVV-SDGIM-GFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 115 ~~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
+.||+|| .|+.. ..+.--|.++|||.|++.-+..
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn~ 161 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTNC 161 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCCC
Confidence 5789877 68755 3467789999999999876653
No 99
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=77.45 E-value=32 Score=29.31 Aligned_cols=32 Identities=13% Similarity=-0.033 Sum_probs=24.5
Q ss_pred CceEEEeCCccchHHHHHHH-hCCCcEEEcccc
Q 029948 116 QVTCVVSDGIMGFGAKAARI-LGIPDVQLWTAS 147 (185)
Q Consensus 116 ~~D~vI~D~~~~~~~~vA~~-lgiP~i~~~~~~ 147 (185)
+||++|.++.++.+..+++. .+.|.+.+.-.+
T Consensus 107 ~pDv~i~~~g~~~~~~~~~~~~~~~~i~y~h~P 139 (419)
T cd03806 107 VPDIFIDTMGYPFTYPLVRLLGGCPVGAYVHYP 139 (419)
T ss_pred CCCEEEEcCCcccHHHHHHHhcCCeEEEEecCC
Confidence 69988888777777777775 468988877655
No 100
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=77.01 E-value=6.5 Score=30.60 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIR 53 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 53 (185)
.+.++++.+.++..|-....-++..|.++|++|..+...-..+.+.+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~ 133 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILE 133 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHH
Confidence 46799999999999999999999999999999999987655544433
No 101
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=75.16 E-value=3.8 Score=31.52 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred ceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|||.++..-|. |+ .|.++...|||+||.++-..
T Consensus 1 mKIaiIgAsG~~Gs-----~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGKAGS-----RILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCchhHH-----HHHHHHHhCCCeeEEEEeCh
Confidence 46666654443 43 67899999999999987443
No 102
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=74.10 E-value=19 Score=29.45 Aligned_cols=33 Identities=18% Similarity=0.267 Sum_probs=25.6
Q ss_pred EcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCc
Q 029948 14 LPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEF 46 (185)
Q Consensus 14 ~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~ 46 (185)
+..++...+.=+.++.++|.++ |+++.++.+..
T Consensus 4 ~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~ 37 (363)
T cd03786 4 VVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQ 37 (363)
T ss_pred EEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCC
Confidence 3345667777888899999998 89999876654
No 103
>PRK11519 tyrosine kinase; Provisional
Probab=73.18 E-value=79 Score=29.29 Aligned_cols=39 Identities=18% Similarity=0.354 Sum_probs=31.8
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+.+++++++ ||.|=-.-...||..|+..|++|-++-.+.
T Consensus 525 ~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 525 QNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 456666665 788999999999999999999999985543
No 104
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=72.78 E-value=7.1 Score=31.18 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=25.6
Q ss_pred CceEEE-eCCccch-HHHHHHHhCCCcEEEcccch
Q 029948 116 QVTCVV-SDGIMGF-GAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 116 ~~D~vI-~D~~~~~-~~~vA~~lgiP~i~~~~~~~ 148 (185)
-||+++ +|+-.-- |..-|+++|||+|.+.=+.+
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~ 190 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNC 190 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCC
Confidence 489766 7987744 67789999999998876554
No 105
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=70.61 E-value=18 Score=27.41 Aligned_cols=103 Identities=16% Similarity=0.169 Sum_probs=49.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHH
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLP 87 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 87 (185)
.++-+-..+.|=++...+|+++|.++ |++|.+-++...-......... +.+....+|.+.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~------~~v~~~~~P~D~------------ 83 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLP------DRVDVQYLPLDF------------ 83 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-G------GG-SEEE---SS------------
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCC------CCeEEEEeCccC------------
Confidence 56666677789999999999999998 7887776653332222121100 113333333211
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEE-eCC-ccchHHHHHHHhCCCcEEEcccc
Q 029948 88 ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVV-SDG-IMGFGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI-~D~-~~~~~~~vA~~lgiP~i~~~~~~ 147 (185)
...++.+++.+ +||++| ++. +++.....|++.|||.+.+..-.
T Consensus 84 ----------~~~~~rfl~~~-------~P~~~i~~EtElWPnll~~a~~~~ip~~LvNarl 128 (186)
T PF04413_consen 84 ----------PWAVRRFLDHW-------RPDLLIWVETELWPNLLREAKRRGIPVVLVNARL 128 (186)
T ss_dssp ----------HHHHHHHHHHH---------SEEEEES----HHHHHH-----S-EEEEEE--
T ss_pred ----------HHHHHHHHHHh-------CCCEEEEEccccCHHHHHHHhhcCCCEEEEeeee
Confidence 12445667665 466555 544 44555678899999999876543
No 106
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.52 E-value=90 Score=28.93 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=31.0
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
..+++.++. ||.|--.-...||..|+..|.+|-++=.+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~ 585 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADG 585 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 345555554 778999999999999999999998885543
No 107
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=70.19 E-value=50 Score=26.97 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=36.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
||+++-..+.|++.-..++.+.|.++ +.+|++++.+...+-+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLL 44 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHH
Confidence 58999999999999999999999998 8999999987765443
No 108
>PLN02316 synthase/transferase
Probab=70.18 E-value=11 Score=36.40 Aligned_cols=41 Identities=12% Similarity=0.334 Sum_probs=31.0
Q ss_pred CCCceEEEEcC---CC--CCCh-HHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 6 VTKQHVIVLPY---PS--QGHI-TPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 6 ~~~~~il~~~~---p~--~GH~-~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+.+||+++++ |. .|=+ .-...|+++|+++||+|.++++.-
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y 631 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKY 631 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 45689998874 21 2333 556899999999999999998753
No 109
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=70.08 E-value=7.5 Score=32.65 Aligned_cols=36 Identities=14% Similarity=-0.117 Sum_probs=24.2
Q ss_pred CCceEEE-eCCcc--chHHHHHHHh--CCCcEEEcccchHH
Q 029948 115 PQVTCVV-SDGIM--GFGAKAARIL--GIPDVQLWTASACG 150 (185)
Q Consensus 115 ~~~D~vI-~D~~~--~~~~~vA~~l--giP~i~~~~~~~~~ 150 (185)
.+||++| +|..- ....--+++. |||++.|.+-...+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~PqvWA 115 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILPQVWA 115 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECcccee
Confidence 3789888 78743 2234456777 79998877665544
No 110
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=69.97 E-value=5.2 Score=32.37 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.2
Q ss_pred EEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 11 VIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 11 il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|+++.. ...|.-.-+..++++|.++||+|++++....
T Consensus 2 Il~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~ 40 (358)
T cd03812 2 ILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKE 40 (358)
T ss_pred EEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCC
Confidence 444433 4558889999999999999999999987653
No 111
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=69.88 E-value=10 Score=30.47 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=26.3
Q ss_pred EEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 11 VIVLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 11 il~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|++++.-.. +--.-+..+++.|.++||+|++++....
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~L~~~g~~v~v~~~~~~ 39 (355)
T cd03799 2 IAYLVKEFPRLSETFILREILALEAAGHEVEIFSLRPP 39 (355)
T ss_pred EEEECCCCCCcchHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 454443222 3446689999999999999999986543
No 112
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=68.72 E-value=7.3 Score=30.01 Aligned_cols=40 Identities=15% Similarity=-0.034 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCCChHH-HHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 9 QHVIVLPYPSQGHITP-MMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P-~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
.||++--+++ +...- ...++++|.++|++|+++.++...+
T Consensus 6 k~IllgVTGs-iaa~k~a~~lir~L~k~G~~V~vv~T~aA~~ 46 (196)
T PRK08305 6 KRIGFGLTGS-HCTYDEVMPEIEKLVDEGAEVTPIVSYTVQT 46 (196)
T ss_pred CEEEEEEcCH-HHHHHHHHHHHHHHHhCcCEEEEEECHhHHH
Confidence 4777766666 44555 6899999999999999998887553
No 113
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=68.63 E-value=4.2 Score=33.89 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=25.4
Q ss_pred CCceEEE-eCCcc-chHHHHHHHhCCCcEEEcccc
Q 029948 115 PQVTCVV-SDGIM-GFGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 115 ~~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~~~ 147 (185)
+.||+|| .|+.. ..+..-|.++|||+|.+.=+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 4689877 68866 446788999999999876544
No 114
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=68.46 E-value=57 Score=26.91 Aligned_cols=110 Identities=19% Similarity=0.135 Sum_probs=58.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchhhhhcccCCCCCCCCCCeeE-EecCCCCCCCCCCCCCCHH
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRF-ETIPDGLPPSDRDATQDLP 87 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~~~~~~~~~~ 87 (185)
||+++ .++..++.=+.++.++|.++ +.++.++.+.........-. .. -++.. +.+. ... . .....
T Consensus 2 ~i~~~-~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~-----~~-~~i~~~~~~~--~~~---~-~~~~~ 68 (365)
T TIGR00236 2 KVSIV-LGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREMLDQVL-----DL-FHLPPDYDLN--IMS---P-GQTLG 68 (365)
T ss_pred eEEEE-EecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHH-----Hh-cCCCCCeeee--cCC---C-CCCHH
Confidence 56554 46678999999999999987 56766665554332221100 00 01110 1111 100 0 11222
Q ss_pred HHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEe--CCccch-HHHHHHHhCCCcEEE
Q 029948 88 ALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVS--DGIMGF-GAKAARILGIPDVQL 143 (185)
Q Consensus 88 ~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~--D~~~~~-~~~vA~~lgiP~i~~ 143 (185)
..... . -..+.+++++ .+||+|++ |..... +..+|.++|||++..
T Consensus 69 ~~~~~---~-~~~l~~~l~~-------~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~ 116 (365)
T TIGR00236 69 EITSN---M-LEGLEELLLE-------EKPDIVLVQGDTTTTLAGALAAFYLQIPVGHV 116 (365)
T ss_pred HHHHH---H-HHHHHHHHHH-------cCCCEEEEeCCchHHHHHHHHHHHhCCCEEEE
Confidence 11111 1 1355556655 37899885 544433 567889999999854
No 115
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=68.42 E-value=12 Score=27.31 Aligned_cols=45 Identities=20% Similarity=0.214 Sum_probs=38.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
++.||++.+.+.-||=.=.--+++.|++.|.+|.........+.+
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~ 55 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEA 55 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHH
Confidence 678999999999999999999999999999999988765544444
No 116
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=67.32 E-value=10 Score=30.35 Aligned_cols=46 Identities=15% Similarity=0.267 Sum_probs=38.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIR 53 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 53 (185)
...++++-.||.|=-+=..+++.+|..+|+.|+|++.+.....+..
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKA 150 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 3478888889988888899999999988999999998877666543
No 117
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=66.34 E-value=10 Score=31.17 Aligned_cols=40 Identities=23% Similarity=0.250 Sum_probs=32.5
Q ss_pred ceEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 9 QHVIVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 9 ~~il~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
+|++++.+ +|.|=..--..+|-.++++|++|-+++++..+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 46777777 66699999999999999999999999887654
No 118
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=65.83 E-value=22 Score=30.25 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhCCCCCCceEEE-eCCccc--hHHHHHHHhCCC--cEEEcccchHH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVV-SDGIMG--FGAKAARILGIP--DVQLWTASACG 150 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI-~D~~~~--~~~~vA~~lgiP--~i~~~~~~~~~ 150 (185)
..+++.+.+.+ .+||++| +|.... -....+++.|+| ++.|.+--..+
T Consensus 70 ~~~~~~~~~~~----~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~PqvWA 121 (373)
T PF02684_consen 70 LFRKLVERIKE----EKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYISPQVWA 121 (373)
T ss_pred HHHHHHHHHHH----cCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEECCceee
Confidence 34444444433 4799888 797442 234567788888 66555544443
No 119
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=65.78 E-value=8.2 Score=29.28 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=32.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.||++.-.++.|=+ -...+.++|.++|++|.++.+++..+.+
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~A~~fi 43 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKAATKFI 43 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChhHHHHc
Confidence 36777777765544 4799999999999999999888765443
No 120
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=65.68 E-value=8.9 Score=29.58 Aligned_cols=33 Identities=30% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCceEEE-eCCccch-HHHHHHHhCCCcEEEcccc
Q 029948 115 PQVTCVV-SDGIMGF-GAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 115 ~~~D~vI-~D~~~~~-~~~vA~~lgiP~i~~~~~~ 147 (185)
+.||+|| .|+...- +.--|.++|||.|++.=+.
T Consensus 107 ~~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn 141 (196)
T TIGR01012 107 REPEVVVVTDPRADHQALKEASEVGIPIVALCDTD 141 (196)
T ss_pred CCCCEEEEECCccccHHHHHHHHcCCCEEEEeeCC
Confidence 3578766 7886644 6778999999999875433
No 121
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=65.36 E-value=10 Score=30.39 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=28.5
Q ss_pred eEEEEcCC---CCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVIVLPYP---SQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p---~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
||+++..- ..|--.-...|+++|+++||+|++++....
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 45555432 346778899999999999999999976543
No 122
>PRK14099 glycogen synthase; Provisional
Probab=64.64 E-value=14 Score=32.40 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=29.9
Q ss_pred CceEEEEcCCC------CCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPYPS------QGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~p~------~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++||+++++-. .|=-.-+-.|.++|+++||+|.++.+.
T Consensus 3 ~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 3 PLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 58888887532 144467889999999999999999874
No 123
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=64.63 E-value=74 Score=25.71 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=19.5
Q ss_pred CCceEEEeC-Cccc-hHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVSD-GIMG-FGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~D-~~~~-~~~~vA~~lgiP~i~~ 143 (185)
.++|+|..- .+.. .+..+++++|+|++..
T Consensus 81 ~~~dvvh~~~~~~~~~~~~~~~~~~~p~i~~ 111 (367)
T cd05844 81 HRPDLVHAHFGFDGVYALPLARRLGVPLVVT 111 (367)
T ss_pred hCCCEEEeccCchHHHHHHHHHHcCCCEEEE
Confidence 378988863 3222 2456789999999863
No 124
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=64.62 E-value=16 Score=28.14 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=26.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
||++.-==|. +---+..|.++|.+.||+|+++.+...+.
T Consensus 2 ~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 2 RILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQS 40 (196)
T ss_dssp EEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTT
T ss_pred eEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCc
Confidence 4444433332 33457889999988889999999887643
No 125
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=63.91 E-value=11 Score=30.76 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch-----HHHHHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF-----GAKAARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~-----~~~vA~~lgiP~i~~~~~ 146 (185)
+.++++++++-+.+ ++.-+||.|.|... ..+.|.+.++|++...-.
T Consensus 133 p~IKE~vR~~I~~A--~kVIAIVMD~FTD~dIf~DLleAa~kR~VpVYiLLD~ 183 (284)
T PF07894_consen 133 PHIKEVVRRMIQQA--QKVIAIVMDVFTDVDIFCDLLEAANKRGVPVYILLDE 183 (284)
T ss_pred CCHHHHHHHHHHHh--cceeEEEeeccccHHHHHHHHHHHHhcCCcEEEEech
Confidence 45666665543322 57779999998854 245677999999876653
No 126
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=63.33 E-value=25 Score=22.65 Aligned_cols=34 Identities=24% Similarity=0.285 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
..++++.-+...|..=..++++.|+++|+.|-..
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~ 49 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAY 49 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4556666666799999999999999999988764
No 127
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=63.11 E-value=10 Score=29.46 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=23.9
Q ss_pred CceEEE-eCCccch-HHHHHHHhCCCcEEEccc
Q 029948 116 QVTCVV-SDGIMGF-GAKAARILGIPDVQLWTA 146 (185)
Q Consensus 116 ~~D~vI-~D~~~~~-~~~vA~~lgiP~i~~~~~ 146 (185)
.||+|| .|+...- +..-|.++|||.|++.=+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDT 146 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDT 146 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeC
Confidence 578766 7886643 677899999999988743
No 128
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=62.83 E-value=9.7 Score=29.11 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=30.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
||++--+++.|=+--...+.++|.++|++|+++.++...
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~A~ 40 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSETVQ 40 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchhHH
Confidence 566666666565555569999999999999999887654
No 129
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=62.70 E-value=32 Score=28.85 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=59.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchh-hhhcccCCCCCCCCCCeeEEecCC--CCCCC-CCCCCC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHN-RFIRNKGPDSLKGLPDFRFETIPD--GLPPS-DRDATQ 84 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~--~~~~~-~~~~~~ 84 (185)
||++ -+++...+.=+.++.++|.++ +.++.++.+....+ .. |. ....+....++. ...-. ......
T Consensus 2 ki~~-v~GtRpe~iklapv~~~l~~~~~~~~~lv~tGqH~~~~~----g~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (365)
T TIGR03568 2 KICV-VTGTRADYGLLRPLLKALQDDPDLELQLIVTGMHLSPEY----GN----TVNEIEKDGFDIDEKIEILLDSDSNA 72 (365)
T ss_pred eEEE-EEecChhHHHHHHHHHHHhcCCCCcEEEEEeCCCCChhh----cc----HHHHHHHcCCCCCCccccccCCCCCC
Confidence 4444 346677788889999999985 78887776654321 11 00 000011111110 00000 000011
Q ss_pred CHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEe--CCccchH-HHHHHHhCCCcEEEccc
Q 029948 85 DLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVS--DGIMGFG-AKAARILGIPDVQLWTA 146 (185)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~--D~~~~~~-~~vA~~lgiP~i~~~~~ 146 (185)
........ +...+.+++++ .+||+|++ |.+...+ ..+|.++|||++-+.-.
T Consensus 73 ~~~~~~~~----~~~~~~~~~~~-------~~Pd~vlv~GD~~~~la~alaA~~~~IPv~HveaG 126 (365)
T TIGR03568 73 GMAKSMGL----TIIGFSDAFER-------LKPDLVVVLGDRFEMLAAAIAAALLNIPIAHIHGG 126 (365)
T ss_pred CHHHHHHH----HHHHHHHHHHH-------hCCCEEEEeCCchHHHHHHHHHHHhCCcEEEEECC
Confidence 22221111 12345556655 37898884 6655444 67889999999954443
No 130
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=62.55 E-value=6.5 Score=28.79 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHHHhCCCeEEEEcCCc
Q 029948 26 MQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~~ 46 (185)
..+|..|+++||+|++.+.+.
T Consensus 12 ~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 12 TALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp HHHHHHHHHCTEEEEEETSCH
T ss_pred HHHHHHHHHcCCEEEEEeccH
Confidence 478999999999999998774
No 131
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=62.52 E-value=6.7 Score=31.04 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 22 ITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 22 ~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
-.-.-.|+++|+++||+|+++++.-
T Consensus 19 gdv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 19 GDVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred hHHHHHHHHHHHhcCCeEEEEEccc
Confidence 3667789999999999999998764
No 132
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=62.27 E-value=9 Score=29.05 Aligned_cols=40 Identities=20% Similarity=0.382 Sum_probs=29.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
|++--+++.|-+-- ..+.++|.++|++|.++.+++..+.+
T Consensus 2 illgvtGsiaa~ka-~~lir~L~~~g~~V~vv~T~~A~~fv 41 (181)
T TIGR00421 2 IVVAMTGASGVIYG-IRLLEVLKEAGVEVHLVISDWAKETI 41 (181)
T ss_pred EEEEEECHHHHHHH-HHHHHHHHHCCCEEEEEECccHHHHH
Confidence 44444455454443 78999999999999999998876554
No 133
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=62.10 E-value=14 Score=28.27 Aligned_cols=42 Identities=29% Similarity=0.121 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecC
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIP 72 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~ 72 (185)
.-.-+|+..|+++||+||+.+.....+... ..+.+++...+|
T Consensus 21 T~ve~L~~~l~~~g~~v~Vyc~~~~~~~~~--------~~y~gv~l~~i~ 62 (185)
T PF09314_consen 21 TFVEELAPRLVSKGIDVTVYCRSDYYPYKE--------FEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHHHhcCCceEEEEEccCCCCCCC--------cccCCeEEEEeC
Confidence 455678999999999999998765432211 123457776665
No 134
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=61.82 E-value=12 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.289 Sum_probs=25.2
Q ss_pred CCceEEE-eCCccc-hHHHHHHHhCCCcEEEcccc
Q 029948 115 PQVTCVV-SDGIMG-FGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 115 ~~~D~vI-~D~~~~-~~~~vA~~lgiP~i~~~~~~ 147 (185)
+.||+|| .|+... .+.--|.++|||.|++.=+.
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDTn 190 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDTN 190 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeCC
Confidence 4689877 688663 36788999999999876544
No 135
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=61.27 E-value=11 Score=29.49 Aligned_cols=19 Identities=32% Similarity=0.419 Sum_probs=16.6
Q ss_pred HHHHHHHHhCCCeEEEEcC
Q 029948 26 MQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~ 44 (185)
..|+++|.++|++|+++..
T Consensus 30 ~aLA~~L~~~G~~V~li~r 48 (229)
T PRK06732 30 KIIAETFLAAGHEVTLVTT 48 (229)
T ss_pred HHHHHHHHhCCCEEEEEEC
Confidence 5788999999999999864
No 136
>PRK14098 glycogen synthase; Provisional
Probab=60.97 E-value=18 Score=31.71 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.0
Q ss_pred CCceEEEEcCCC------CCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 7 TKQHVIVLPYPS------QGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 7 ~~~~il~~~~p~------~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+-+||++++.-. .|=-.-+-.|.++|+++||+|.++.+.
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~ 48 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPK 48 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCC
Confidence 348888887532 144467789999999999999999874
No 137
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=60.69 E-value=9.9 Score=28.93 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCCChHH------------HHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITP------------MMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P------------~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+|++..+|+.=++.| -..||+++..||++||++..+.
T Consensus 4 k~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 4 KKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp -EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 3555555555555533 3689999999999999998774
No 138
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=59.35 E-value=16 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=27.1
Q ss_pred CCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 18 SQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 18 ~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
..|+-.-+..+++.|.+.||+|++++.....
T Consensus 13 ~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~ 43 (377)
T cd03798 13 NGGGGIFVKELARALAKRGVEVTVLAPGPWG 43 (377)
T ss_pred CchHHHHHHHHHHHHHHCCCceEEEecCCCC
Confidence 4688899999999999999999999876543
No 139
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=59.20 E-value=20 Score=28.48 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=30.2
Q ss_pred eEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++.++++ +|.|-......|+.+|+.+|+.|.++-.+
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~D 40 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFD 40 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecC
Confidence 5666666 67799999999999999999999998544
No 140
>CHL00067 rps2 ribosomal protein S2
Probab=58.61 E-value=18 Score=28.55 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=26.4
Q ss_pred CCceEEE-eCCccc-hHHHHHHHhCCCcEEEcccchH
Q 029948 115 PQVTCVV-SDGIMG-FGAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 115 ~~~D~vI-~D~~~~-~~~~vA~~lgiP~i~~~~~~~~ 149 (185)
+.||+|| .|+-.. -+.--|.++|||.|++.=+.+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn~~ 196 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTNCD 196 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCCCC
Confidence 4688777 687664 3677899999999988765543
No 141
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=58.25 E-value=15 Score=29.45 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=23.3
Q ss_pred CceEEE-eCCccch-HHHHHHHhCCCcEEEcc
Q 029948 116 QVTCVV-SDGIMGF-GAKAARILGIPDVQLWT 145 (185)
Q Consensus 116 ~~D~vI-~D~~~~~-~~~vA~~lgiP~i~~~~ 145 (185)
.||+|| .|+...- +.--|.++|||+|.++=
T Consensus 118 ~P~llIV~Dp~~d~qAI~EA~~lnIPvIal~D 149 (249)
T PTZ00254 118 EPRLLIVTDPRTDHQAIREASYVNIPVIALCD 149 (249)
T ss_pred CCCEEEEeCCCcchHHHHHHHHhCCCEEEEec
Confidence 577666 7986643 67789999999998873
No 142
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=58.17 E-value=16 Score=27.63 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=30.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
||++.-+++ +...-...+.++|.++|++|.++.++...+.+
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~A~~fi 42 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQAATQFI 42 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChHHHhhc
Confidence 566666665 44556679999999999999999888765443
No 143
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=57.47 E-value=14 Score=29.09 Aligned_cols=34 Identities=32% Similarity=0.493 Sum_probs=27.5
Q ss_pred EEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 11 VIVL-PYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 11 il~~-~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
++++ -+|+.|-..-.-+|+++|.+++|+|-.++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~k 37 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEK 37 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccch
Confidence 4444 458999999999999999999998876543
No 144
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=57.46 E-value=14 Score=28.99 Aligned_cols=34 Identities=24% Similarity=0.288 Sum_probs=26.0
Q ss_pred CCceEEE-eCCcc-chHHHHHHHhCCCcEEEcccch
Q 029948 115 PQVTCVV-SDGIM-GFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 115 ~~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
+.||+|| .|+.- ..+.--|.++|||.|++.=+.+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDTn~ 189 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDTNC 189 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeCCC
Confidence 4689777 68765 4467889999999998776554
No 145
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=57.08 E-value=16 Score=29.89 Aligned_cols=34 Identities=18% Similarity=0.232 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+++|+++-.++.| .-+|..|++.||+|+++.-..
T Consensus 5 ~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 3789999777655 457889999999999997654
No 146
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=56.91 E-value=16 Score=27.67 Aligned_cols=44 Identities=23% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchH--HHHHHHhCCCcEEEcccchH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFG--AKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~--~~vA~~lgiP~i~~~~~~~~ 149 (185)
.++.+++.. .++.-+|.|+|++.+ ..+|.++|..+|.+-...-+
T Consensus 180 l~~~lI~~~------t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y 225 (231)
T PF01555_consen 180 LIERLIKAS------TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEY 225 (231)
T ss_dssp HHHHHHHHH------S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHH
T ss_pred HHHHHHHhh------hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHH
Confidence 445566554 245678999999765 67889999999887655433
No 147
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=56.84 E-value=27 Score=26.80 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=33.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
.+..|.+++..|.|=....+.++-+.+.+|++|.++
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~iv 56 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVV 56 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 356899999999999999999999999999999887
No 148
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=56.32 E-value=1.3e+02 Score=25.65 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=21.6
Q ss_pred CChHHHHHHHHHHHh--CCCeEE---EEcCCcc
Q 029948 20 GHITPMMQLAKLLHS--KGFHVT---FVNTEFN 47 (185)
Q Consensus 20 GH~~P~l~La~~La~--rGh~Vt---~it~~~~ 47 (185)
|==.--+.++++|.+ .|++|. ++.+...
T Consensus 8 ged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~ 40 (396)
T TIGR03492 8 GEDLIAARIAKALLQLSPDLNLEALPLVGEGRA 40 (396)
T ss_pred hHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHH
Confidence 333567889999998 699999 8877654
No 149
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=56.23 E-value=22 Score=28.18 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=26.1
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
...|.-..+..|++.|.+.||+|.+++...
T Consensus 10 ~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 10 DVGGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred cCccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 446899999999999999999999998654
No 150
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=55.81 E-value=17 Score=29.66 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=38.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
|||+++-..+.|++.-..++.+.|.++ +.+||+++.+.+.+.+
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~~~~l~ 45 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEGFAQIP 45 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHHHHHHH
Confidence 589999999999999999999999997 8999999988765433
No 151
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.26 E-value=14 Score=31.80 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=29.3
Q ss_pred CceEEEEcCC-CC--CChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 8 KQHVIVLPYP-SQ--GHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 8 ~~~il~~~~p-~~--GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+..+++=|++ .- ||+.|+..| +.|++.||+|+++..+..
T Consensus 34 ~~Y~GfDPTa~slHlGhlv~l~kL-~~fQ~aGh~~ivLigd~t 75 (401)
T COG0162 34 RVYIGFDPTAPSLHLGHLVPLMKL-RRFQDAGHKPIVLIGDAT 75 (401)
T ss_pred eEEEeeCCCCCccchhhHHHHHHH-HHHHHCCCeEEEEecccc
Confidence 4556666666 22 899999877 579999999999876543
No 152
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=55.05 E-value=39 Score=22.45 Aligned_cols=36 Identities=22% Similarity=0.251 Sum_probs=26.1
Q ss_pred CceEEE--eCCccch----HHHHHHHhCCCcEEEcccchHHH
Q 029948 116 QVTCVV--SDGIMGF----GAKAARILGIPDVQLWTASACGF 151 (185)
Q Consensus 116 ~~D~vI--~D~~~~~----~~~vA~~lgiP~i~~~~~~~~~~ 151 (185)
+.|+|| .|..... +...|++.|+|++..-..+...+
T Consensus 48 ~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~~l 89 (97)
T PF10087_consen 48 KADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVSSL 89 (97)
T ss_pred CCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 578876 6775533 35688999999999886666543
No 153
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.02 E-value=67 Score=27.38 Aligned_cols=59 Identities=22% Similarity=0.303 Sum_probs=45.6
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc--hhhhhcccCCCCCCCCCCeeEEecCC
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN--HNRFIRNKGPDSLKGLPDFRFETIPD 73 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~--~~~~~~~~~~~~~~~~~~i~~~~l~~ 73 (185)
..+.|+.++..+-.||-==|--=|.-|+..|++|+++.-... .+.+ .+.|+|+++.++.
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l---------~~hprI~ih~m~~ 70 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEEL---------LNHPRIRIHGMPN 70 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHH---------hcCCceEEEeCCC
Confidence 456788999999999988888889999999999999974432 2222 2357899999874
No 154
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=54.65 E-value=34 Score=23.32 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=32.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
++....++..|-....-++..|.++|++|.++......+
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~ 40 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGVDVPPE 40 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCCCCCHH
Confidence 567778888999999999999999999999986554433
No 155
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=54.62 E-value=14 Score=29.00 Aligned_cols=25 Identities=28% Similarity=0.604 Sum_probs=20.1
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 21 HITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 21 H~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|+..|...+.+|.++|++|+++...
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999876
No 156
>PRK12342 hypothetical protein; Provisional
Probab=54.07 E-value=27 Score=27.99 Aligned_cols=31 Identities=13% Similarity=0.173 Sum_probs=23.6
Q ss_pred CceEEEeCCccc------hHHHHHHHhCCCcEEEccc
Q 029948 116 QVTCVVSDGIMG------FGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 116 ~~D~vI~D~~~~------~~~~vA~~lgiP~i~~~~~ 146 (185)
+||+|+..-... .+..+|+.||+|++++...
T Consensus 109 ~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 109 GFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred CCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 599999744332 2578999999999987754
No 157
>PRK05920 aromatic acid decarboxylase; Validated
Probab=53.83 E-value=24 Score=27.36 Aligned_cols=42 Identities=10% Similarity=0.135 Sum_probs=32.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.||++--.++ +...=...+.|+|.+.|++|+++.+....+.+
T Consensus 4 krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~A~~fv 45 (204)
T PRK05920 4 KRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKAAQKVL 45 (204)
T ss_pred CEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChhHHHHH
Confidence 5777766665 44467889999999999999999988765543
No 158
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=53.43 E-value=45 Score=24.80 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHH-HhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC---C-------CCCCC-------C-
Q 029948 20 GHITPMMQLAKLL-HSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD---G-------LPPSD-------R- 80 (185)
Q Consensus 20 GH~~P~l~La~~L-a~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~---~-------~~~~~-------~- 80 (185)
+.+.-.++.++++ .+.|.+|-+--.. +...+.+. .+++++.++. + ..... .
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~---------~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~ 86 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKH---------VSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYP 86 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC----------SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEES
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHh---------CCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecc
Confidence 5667778899999 7888888764332 34444222 2355555542 0 00000 0
Q ss_pred CCCCCHHHHHHHHHH-------hCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHHH
Q 029948 81 DATQDLPALCSSIRK-------TCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFLA 153 (185)
Q Consensus 81 ~~~~~~~~~~~~~~~-------~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~~ 153 (185)
....+...+...+.. .....++..++++.. .++|+||-+.. +...|+++|+|++.+.+.--+....
T Consensus 87 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~~~~----~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi~~A 159 (176)
T PF06506_consen 87 NIIPGLESIEELLGVDIKIYPYDSEEEIEAAIKQAKA----EGVDVIVGGGV---VCRLARKLGLPGVLIESGEESIRRA 159 (176)
T ss_dssp S-SCCHHHHHHHHT-EEEEEEESSHHHHHHHHHHHHH----TT--EEEESHH---HHHHHHHTTSEEEESS--HHHHHHH
T ss_pred cccHHHHHHHHHhCCceEEEEECCHHHHHHHHHHHHH----cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHHHHHH
Confidence 001223222222210 013466667766654 36999998863 4789999999999888855444333
No 159
>PLN02939 transferase, transferring glycosyl groups
Probab=53.11 E-value=28 Score=33.36 Aligned_cols=40 Identities=23% Similarity=0.272 Sum_probs=31.1
Q ss_pred CCCceEEEEcCCC-----C-CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 6 VTKQHVIVLPYPS-----Q-GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 6 ~~~~~il~~~~p~-----~-GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
...+||+++++-. . |=-.-.-.|.++|+++||+|.++++.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~ 524 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPK 524 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4579999887522 2 33366778999999999999999875
No 160
>PRK06849 hypothetical protein; Provisional
Probab=52.65 E-value=33 Score=28.86 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
++++|++.-.. ....++++|.|.++||+|.++.+..
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 35677766322 2358999999999999999987654
No 161
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=52.62 E-value=36 Score=25.66 Aligned_cols=36 Identities=17% Similarity=0.413 Sum_probs=28.3
Q ss_pred ceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+|++.++. ++.|=-.-...||+.|+++|++|.++=.
T Consensus 17 ~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~ 54 (204)
T TIGR01007 17 IKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDG 54 (204)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 55555543 5668888999999999999999988743
No 162
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=52.41 E-value=24 Score=22.32 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCc
Q 029948 24 PMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 24 P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.-+++|..|+++|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45899999999999999996543
No 163
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=52.08 E-value=2e+02 Score=26.71 Aligned_cols=38 Identities=16% Similarity=0.383 Sum_probs=30.5
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+.+++++++ |+.|=-.-...||..|+..|.+|-++=.+
T Consensus 530 ~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D 569 (726)
T PRK09841 530 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD 569 (726)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 456666665 56688889999999999999999988544
No 164
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=51.42 E-value=85 Score=25.00 Aligned_cols=51 Identities=16% Similarity=0.018 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEcccchHHHHHH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWTASACGFLAA 154 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~~~~~~~~~ 154 (185)
.++++.+.+++ .+..||+.+...+- +..+|++.|+|.+.+.+..-..+.++
T Consensus 205 ~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~~~~~y~~~m 257 (266)
T cd01018 205 DLKRLIDLAKE----KGVRVVFVQPQFSTKSAEAIAREIGAKVVTIDPLAADWEENL 257 (266)
T ss_pred HHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHcCCeEEEeCCcHHHHHHHH
Confidence 55666666654 46889999887754 45799999999988876654333333
No 165
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=50.82 E-value=41 Score=25.35 Aligned_cols=30 Identities=17% Similarity=0.073 Sum_probs=21.2
Q ss_pred CCceEEEeCCccch-------HHHHHHHhCCCcEEEcc
Q 029948 115 PQVTCVVSDGIMGF-------GAKAARILGIPDVQLWT 145 (185)
Q Consensus 115 ~~~D~vI~D~~~~~-------~~~vA~~lgiP~i~~~~ 145 (185)
++| ++|++..... ...+++++|+|++....
T Consensus 35 KrP-lIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRP-LLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCc-EEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 466 6776654433 56799999999996554
No 166
>PRK13604 luxD acyl transferase; Provisional
Probab=49.75 E-value=44 Score=27.65 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
+...+++..+..++..-+..+|+.|+++|+.|..+
T Consensus 36 ~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrf 70 (307)
T PRK13604 36 KNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRY 70 (307)
T ss_pred CCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEe
Confidence 34566666666677777999999999999988664
No 167
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=49.73 E-value=25 Score=30.65 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.8
Q ss_pred ceEEEEcCCCC--CC-hHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQ--GH-ITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~--GH-~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+++++|.-|. .+ .+...+|++.|.+||.+|.|...+-
T Consensus 307 ~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 307 HSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred CcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 57888887665 22 3889999999999999999987664
No 168
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=49.47 E-value=25 Score=21.84 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.5
Q ss_pred HHHHHHHHhCCCeEEEEc
Q 029948 26 MQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it 43 (185)
+..|..|+++|++|+++=
T Consensus 9 l~aA~~L~~~g~~v~v~E 26 (68)
T PF13450_consen 9 LAAAYYLAKAGYRVTVFE 26 (68)
T ss_dssp HHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHCCCcEEEEe
Confidence 567889999999999983
No 169
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=49.42 E-value=28 Score=27.60 Aligned_cols=37 Identities=24% Similarity=0.167 Sum_probs=30.9
Q ss_pred EEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 11 VIVLP-YPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 11 il~~~-~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
++++. -||.|--.....+|..++++|++|-++..+..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 44444 47889999999999999999999999987654
No 170
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=49.32 E-value=35 Score=27.39 Aligned_cols=32 Identities=16% Similarity=0.184 Sum_probs=24.2
Q ss_pred CceEEEeCCccc------hHHHHHHHhCCCcEEEcccc
Q 029948 116 QVTCVVSDGIMG------FGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 116 ~~D~vI~D~~~~------~~~~vA~~lgiP~i~~~~~~ 147 (185)
.||+|+...... .+..+|+.||+|++++....
T Consensus 112 ~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~l 149 (256)
T PRK03359 112 GFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSKI 149 (256)
T ss_pred CCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEEE
Confidence 599999754432 35789999999999877653
No 171
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=49.10 E-value=34 Score=28.31 Aligned_cols=44 Identities=5% Similarity=0.070 Sum_probs=39.0
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
.++|+++-.-+.|++.-..++.+.|.++ +.+|++++.+.+.+-+
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~ 50 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPIL 50 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHh
Confidence 4689999999999999999999999998 7999999988776543
No 172
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=48.99 E-value=60 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
+.++.|--.-.+.|++.|+++|.+|.++
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~ 32 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYY 32 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEE
Confidence 4467788899999999999999999886
No 173
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=48.94 E-value=41 Score=27.25 Aligned_cols=43 Identities=16% Similarity=0.202 Sum_probs=33.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
+...|.+.-.||.|--.-.-.|++.|.++|++|-+++.++.+.
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp 70 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSP 70 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCC
Confidence 3467888888999999999999999999999999998776554
No 174
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=48.93 E-value=37 Score=24.15 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCC--CCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 1 MGSI--GVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 1 m~~~--~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
|+.+ ...+++|.|+-.+=.| ..|++.|.+.||+|+-+.+.+.
T Consensus 1 ~~~~~~~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~srs~ 44 (127)
T PF10727_consen 1 MNTPATQAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYSRSP 44 (127)
T ss_dssp -----------EEEEECTSCCC-----CHHHHHHHHTTSEEEEESSCHH
T ss_pred CCccccCCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCCc
Confidence 5554 4667899999776655 4789999999999988876653
No 175
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=48.86 E-value=31 Score=24.26 Aligned_cols=39 Identities=23% Similarity=0.096 Sum_probs=23.6
Q ss_pred HHHHHHhhCCCCCCceEEEeCCccc------hHHHHHHHhCCCcEEEcc
Q 029948 103 ELLGKLNSAGNVPQVTCVVSDGIMG------FGAKAARILGIPDVQLWT 145 (185)
Q Consensus 103 ~ll~~l~~~~~~~~~D~vI~D~~~~------~~~~vA~~lgiP~i~~~~ 145 (185)
++.+.+.++ ++| ++|++.... ....+++++|+|++....
T Consensus 3 ~~~~~L~~A---~rP-~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 3 EAADLLSSA---KRP-VILAGRGARRSGAAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp HHHHHHHH----SSE-EEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGG
T ss_pred HHHHHHHhC---CCE-EEEEcCCcChhhHHHHHHHHHHHHCCCEEecCc
Confidence 344444444 477 777665432 135799999999987554
No 176
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=48.30 E-value=22 Score=28.54 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
++|+++-.+..| ..+|..|++.||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEEC
Confidence 466666665554 5688899999999999976
No 177
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=48.14 E-value=24 Score=28.59 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=37.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
||+++-....|++.-..++.+.|.++ +.+||+++.+.+.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~~~~~ 44 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGFADIV 44 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhHhhhh
Confidence 58899999999999999999999998 8999999988776544
No 178
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=47.73 E-value=42 Score=27.96 Aligned_cols=39 Identities=21% Similarity=0.185 Sum_probs=33.0
Q ss_pred ceEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+||++|++ +|.|=-.--..+|..|++.|..|-+++++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA 41 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA 41 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 58898888 7779999999999999999988777766654
No 179
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=47.46 E-value=26 Score=26.72 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHh-CCCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHS-KGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~-rGh~Vt~it~~~~~~~~ 51 (185)
||++.-+++.| ..=..++.++|.+ .|++|+++.++...+.+
T Consensus 3 ~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~A~~fv 44 (185)
T PRK06029 3 RLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQAARQTL 44 (185)
T ss_pred EEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHHHHHHH
Confidence 67777777766 5558899999999 49999999998876554
No 180
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=47.28 E-value=41 Score=26.62 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
|.|.+.-=+|.|--.-...||..|+++|++|-++=.
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~ 36 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGC 36 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 456777668889999999999999999999988743
No 181
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=46.78 E-value=66 Score=24.51 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=28.4
Q ss_pred ce-EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QH-VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~-il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+ |+|+..++.-|---+.+++++|.+.|..|.+++-.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 35 66777787777766778888888888888888643
No 182
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=46.76 E-value=47 Score=25.00 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=22.0
Q ss_pred CCceEEE-eCCc-cchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVV-SDGI-MGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI-~D~~-~~~~~~vA~~lgiP~i~~ 143 (185)
.++|.|+ .+.- ...+..+|.++|+|++..
T Consensus 52 ~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~v 82 (179)
T COG0503 52 DGIDKIVTIEARGIPLAAAVALELGVPFVPV 82 (179)
T ss_pred cCCCEEEEEccccchhHHHHHHHhCCCEEEE
Confidence 3689999 4443 355789999999999864
No 183
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=46.60 E-value=31 Score=26.03 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=24.8
Q ss_pred CChHH-HHHHHHHHHh-CCCeEEEEcCCcchh
Q 029948 20 GHITP-MMQLAKLLHS-KGFHVTFVNTEFNHN 49 (185)
Q Consensus 20 GH~~P-~l~La~~La~-rGh~Vt~it~~~~~~ 49 (185)
||... ..++.++|.+ +|++|.++.++...+
T Consensus 10 g~~l~e~v~~l~~L~~~~g~eV~vv~S~~A~~ 41 (174)
T TIGR02699 10 GDKLPETYSIMKDVKNRYGDEIDVFLSKAGEQ 41 (174)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEECHhHHH
Confidence 78866 8899999985 599999998887654
No 184
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=46.35 E-value=52 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=25.6
Q ss_pred CCCceEE-EEcCCCC-CChHHHHHHHHHHHhCCCe---EEEEcCC
Q 029948 6 VTKQHVI-VLPYPSQ-GHITPMMQLAKLLHSKGFH---VTFVNTE 45 (185)
Q Consensus 6 ~~~~~il-~~~~p~~-GH~~P~l~La~~La~rGh~---Vt~it~~ 45 (185)
+++.|++ +++-+|. ||++=+..|++.+.++|.. |+.++..
T Consensus 27 ~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~~V~vH~f~DG 71 (223)
T PF06415_consen 27 GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVKKVYVHAFTDG 71 (223)
T ss_dssp T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-SEEEEEEEE-S
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCCEEEEEEecCC
Confidence 4568887 5554444 9999999999999999954 5666643
No 185
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=46.11 E-value=1.3e+02 Score=23.04 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.-+.++++.|.+.|+++ +++.+..+.+
T Consensus 11 ~~l~~lAk~L~~lGf~I--~AT~GTAk~L 37 (187)
T cd01421 11 TGLVEFAKELVELGVEI--LSTGGTAKFL 37 (187)
T ss_pred ccHHHHHHHHHHCCCEE--EEccHHHHHH
Confidence 44789999999999887 4666676655
No 186
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=45.97 E-value=48 Score=26.92 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|+|+++-=+|.|=......||..|+++|++|-++=.+
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~D 37 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCD 37 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEecc
Confidence 5688888899999999999999999999999888444
No 187
>PF08026 Antimicrobial_5: Bee antimicrobial peptide; InterPro: IPR012524 This entry represents antimicrobial peptides produced by bees. These peptides have strong antimicrobial and some anti-fungal activity and has homology to abaecin which is the largest proline-rich antimicrobial peptide isolated from European bumblebee Bombus pascuorum [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region
Probab=45.94 E-value=2.7 Score=22.86 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=16.3
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCC
Q 029948 13 VLPYPSQGHITPMMQLAKLLHSKG 36 (185)
Q Consensus 13 ~~~~p~~GH~~P~l~La~~La~rG 36 (185)
|=+||++|-+||-+.+---|-+.|
T Consensus 15 FPTFPGqGP~NPKir~Pyplpn~g 38 (39)
T PF08026_consen 15 FPTFPGQGPFNPKIRWPYPLPNPG 38 (39)
T ss_pred CCcCCCCCCCCccccccccCCCCC
Confidence 457899999998776654444444
No 188
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=45.93 E-value=45 Score=26.35 Aligned_cols=34 Identities=18% Similarity=0.083 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
|.|.++-=+|.|=..-...||..|+++|++|-++
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLli 34 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQI 34 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 4577775678888899999999999999999888
No 189
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=45.91 E-value=54 Score=25.99 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.4
Q ss_pred EEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 12 IVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 12 l~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
.+..+ +|.|=..-.+.||.+|+++|-.|+++=.+.+.+
T Consensus 5 tf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~p 43 (231)
T PF07015_consen 5 TFASSKGGAGKTTAAMALASELAARGARVALIDADPNQP 43 (231)
T ss_pred EEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCc
Confidence 34444 788999999999999999999999997666654
No 190
>TIGR02845 spore_V_AD stage V sporulation protein AD. Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.
Probab=45.58 E-value=1e+02 Score=25.76 Aligned_cols=52 Identities=25% Similarity=0.235 Sum_probs=33.1
Q ss_pred CceEEEe-CCcc--chHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHHHCCCCC
Q 029948 116 QVTCVVS-DGIM--GFGAKAARILGIPDVQLWTASACGFLAASQFPELVNRGIVP 167 (185)
Q Consensus 116 ~~D~vI~-D~~~--~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 167 (185)
..|++|. |... ..+..+++++|+|..-+...+............++..|..+
T Consensus 71 DID~IIvGdl~~Q~~~As~vA~~LGIP~fdV~~ACSTf~~AL~lAa~lI~SG~ad 125 (327)
T TIGR02845 71 DVDFFLAGDLLNQIITANFVARDLGIPFLGLYGACSTSMETLALGAMLVDGGFAD 125 (327)
T ss_pred HCCEEEEeCCCCcccHHHHHHHHhCCCEEEEeccCHHHHHHHHHHHHHHhCCCCC
Confidence 4788874 5331 23567999999999776666655555444445566666533
No 191
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=45.54 E-value=1.2e+02 Score=26.17 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+.+||+++-.++.-| +|+++|.+.++-..+++.+.+
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 358999999999877 689999998866566555544
No 192
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=44.78 E-value=52 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=24.2
Q ss_pred CCceEEE-eCCc-cchHHHHHHHhCCCcEEEccc
Q 029948 115 PQVTCVV-SDGI-MGFGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI-~D~~-~~~~~~vA~~lgiP~i~~~~~ 146 (185)
.++|+|+ .+.- .+.+..+|.++|+|++..--.
T Consensus 49 ~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~vRK~ 82 (189)
T PRK09219 49 EGITKILTIEASGIAPAVMAALALGVPVVFAKKK 82 (189)
T ss_pred CCCCEEEEEccccHHHHHHHHHHHCCCEEEEEEC
Confidence 3689998 4543 356788999999999887654
No 193
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=44.40 E-value=63 Score=23.24 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=38.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRN 54 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~ 54 (185)
.+|++-+..+-+|-.=---+++.|.+.|++|..+...-..+.+.++
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~a 47 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKA 47 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
Confidence 5788999999999999999999999999999999876555544433
No 194
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=44.38 E-value=54 Score=25.79 Aligned_cols=47 Identities=19% Similarity=0.039 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchH--H-HHHHHhCCCcEEEcccchHH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFG--A-KAARILGIPDVQLWTASACG 150 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~--~-~vA~~lgiP~i~~~~~~~~~ 150 (185)
.+.+.-+++.+ .+.|+|+.|++.... . .+++..|+|++...+..+..
T Consensus 166 ~l~~Aa~~L~~----~gadlIvLDCmGYt~~~r~~~~~~~g~PVlLsr~lvAr~ 215 (221)
T PF07302_consen 166 ELAAAARELAE----QGADLIVLDCMGYTQEMRDIVQRALGKPVLLSRTLVARL 215 (221)
T ss_pred HHHHHHHHHHh----cCCCEEEEECCCCCHHHHHHHHHHhCCCEEeHHHHHHHH
Confidence 33444444443 478999999976443 3 58889999999876655443
No 195
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=44.31 E-value=29 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCceEEE-eCCcc-chHHHHHHHhCCCcEEEcccch
Q 029948 115 PQVTCVV-SDGIM-GFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 115 ~~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
+.||+|| .|+-. ..+..-|.++|||.|++.-+.+
T Consensus 142 ~~P~~vii~~~~~~~~~i~Ea~~l~IP~i~i~Dtn~ 177 (211)
T PF00318_consen 142 KLPDLVIILDPNKNKNAIREANKLNIPTIAIVDTNC 177 (211)
T ss_dssp SSBSEEEESSTTTTHHHHHHHHHTTS-EEEEESTTS
T ss_pred ccCcEEEEecccccchhHHHHHhcCceEEEeecCCC
Confidence 4589877 68765 4467789999999998876554
No 196
>PRK08304 stage V sporulation protein AD; Validated
Probab=44.06 E-value=1e+02 Score=25.97 Aligned_cols=66 Identities=23% Similarity=0.231 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEe-CCc--cchHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHHHCCC
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVS-DGI--MGFGAKAARILGIPDVQLWTASACGFLAASQFPELVNRGI 165 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~-D~~--~~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~~ 165 (185)
.+.+++.+++..-.. ...|++|+ |.. ...+..+++++|+|..-+...+.........-..+...|.
T Consensus 61 ~eAa~~ALekAGI~~--~DID~lI~Gdll~Q~~sAs~vA~~LGIPa~dV~gACST~~~AL~lAa~lI~SG~ 129 (337)
T PRK08304 61 EDAIQQALQKANLKK--SDIDYLLAGDLLNQIISANFAARELGIPFLGLYGACSTMMESLALGSMLIDGGF 129 (337)
T ss_pred HHHHHHHHHHcCCCH--HHCCEEEEECCCCCcchHHHHHHHhCCcEEEEeccCHHHHHHHHHHHHHHhcCC
Confidence 345555554421011 25888874 443 2335678999999988776665554444444444555654
No 197
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=43.97 E-value=35 Score=25.23 Aligned_cols=39 Identities=15% Similarity=0.042 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEcc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWT 145 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~ 145 (185)
+.++.++. -+||+||......- ....-++.|||++.+..
T Consensus 60 ~n~E~ll~--------l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVA--------LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhc--------cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 45566654 37999997543322 34455789999988753
No 198
>PLN02891 IMP cyclohydrolase
Probab=43.91 E-value=87 Score=28.05 Aligned_cols=45 Identities=20% Similarity=0.252 Sum_probs=30.3
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCC--CCCC
Q 029948 21 HITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPD--GLPP 77 (185)
Q Consensus 21 H~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~--~~~~ 77 (185)
+-.=+.+||+.|.+.| |.++++.++.+.+ +. .++.+..+.+ +.|+
T Consensus 31 DKtgi~~fAk~L~~~g--veIiSTgGTak~L-~e---------~Gi~v~~Vsd~TgfPE 77 (547)
T PLN02891 31 DKTDLALLANGLQELG--YTIVSTGGTASAL-EA---------AGVSVTKVEELTNFPE 77 (547)
T ss_pred cccCHHHHHHHHHHCC--CEEEEcchHHHHH-HH---------cCCceeeHHhccCCch
Confidence 4445889999999987 5567888887666 33 2466666654 4554
No 199
>PLN00016 RNA-binding protein; Provisional
Probab=43.86 E-value=35 Score=28.53 Aligned_cols=36 Identities=28% Similarity=0.347 Sum_probs=24.1
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
..+|+++.. ++.|-+ -..|++.|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 356776611 333433 356889999999999998754
No 200
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=43.80 E-value=37 Score=29.92 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCCChHHH------------HHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPYPSQGHITPM------------MQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~------------l~La~~La~rGh~Vt~it~~~ 46 (185)
..||++..+|+.=-+.|. ..||+++..||++||+++.+.
T Consensus 256 gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~ 306 (475)
T PRK13982 256 GRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPV 306 (475)
T ss_pred CCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCc
Confidence 358899888988888776 478999999999999998553
No 201
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=43.80 E-value=71 Score=24.70 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccch
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
.++.+++.+........+.+||+|-..-.+..-|++.|||...+..-..
T Consensus 13 Nlqaiida~~~~~~~a~i~~Visd~~~A~~lerA~~~gIpt~~~~~k~~ 61 (200)
T COG0299 13 NLQAIIDAIKGGKLDAEIVAVISDKADAYALERAAKAGIPTVVLDRKEF 61 (200)
T ss_pred cHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHcCCCEEEeccccC
Confidence 3455555543210002477899998777789999999999998877665
No 202
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=43.63 E-value=50 Score=25.74 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.9
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+++.+|.+-..||.|-..-|+.=|++|.++|.+|.+-..+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 5678999999999999999999999999999998875433
No 203
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=43.44 E-value=35 Score=27.10 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=35.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCcchhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKG--FHVTFVNTEFNHNR 50 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~~ 50 (185)
||+++-..+.|++.-+.++.++|.++. -+|++++.+...+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l 43 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPL 43 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHH
Confidence 588888999999999999999999985 89999998876543
No 204
>PRK09620 hypothetical protein; Provisional
Probab=43.06 E-value=28 Score=27.35 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCCChHHH------------HHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPM------------MQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~------------l~La~~La~rGh~Vt~it~~ 45 (185)
.+|++..+|+.=.+.|. ..||++|.++|++|+++...
T Consensus 4 k~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 4 KKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46666666654444333 57899999999999998753
No 205
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=43.03 E-value=38 Score=29.00 Aligned_cols=42 Identities=14% Similarity=0.110 Sum_probs=32.7
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNR 50 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 50 (185)
..||++.-.++ +...-...+.+.|.++|++|+++.++...+.
T Consensus 3 ~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~A~~f 44 (390)
T TIGR00521 3 NKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEAAKKF 44 (390)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHhHHHH
Confidence 35787777776 4456689999999999999999988865543
No 206
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=42.95 E-value=77 Score=19.79 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=27.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+++...+|.|=-.-...|++.|+++|++|.++-
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 345555677888899999999999999998775
No 207
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=42.91 E-value=23 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.375 Sum_probs=26.7
Q ss_pred ceEEEEcCC-CC--CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYP-SQ--GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p-~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.-+++=|++ .. ||+.|+..+ +.|++.||++.++..+.
T Consensus 33 vy~G~dPTg~~lHlGh~v~l~~l-~~lq~~G~~~~iligd~ 72 (377)
T TIGR00234 33 LYVGFDPTAPSLHLGHLVPLLKL-RDFQQAGHEVIVLLGDA 72 (377)
T ss_pred EEEeeCCCCCCccHHHHHHHHHH-HHHHHCCCcEEEEEecc
Confidence 344566665 33 999997665 68999999998887543
No 208
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=42.88 E-value=44 Score=25.25 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|+|.++ |.||+- +.+|..|+++||+|+.+=...
T Consensus 1 M~I~Vi---GlGyvG--l~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVI---GLGYVG--LPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE-----STTH--HHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEE---CCCcch--HHHHHHHHhCCCEEEEEeCCh
Confidence 466666 445543 778999999999999985443
No 209
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=42.75 E-value=58 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.145 Sum_probs=25.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.+.++++..+.| --..++++|+++|++|.++.-
T Consensus 9 ~~k~vlVtGas~g---iG~~ia~~l~~~G~~V~~~~r 42 (278)
T PRK08277 9 KGKVAVITGGGGV---LGGAMAKELARAGAKVAILDR 42 (278)
T ss_pred CCCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 4466777776642 347899999999999988753
No 210
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=42.56 E-value=1.5e+02 Score=22.54 Aligned_cols=29 Identities=21% Similarity=0.241 Sum_probs=24.8
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.++.|-..-.+.|++.|.++|++|-++-
T Consensus 7 t~t~~GKT~vs~~L~~~l~~~g~~v~~~K 35 (222)
T PRK00090 7 TDTDVGKTVVTAALAQALREAGYSVAGYK 35 (222)
T ss_pred CCCCcCHHHHHHHHHHHHHHcCCceEEEe
Confidence 34566999999999999999999998864
No 211
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=42.54 E-value=31 Score=27.76 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+||+++-.+..| ..+|..|+++||+|+++..+
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r~ 32 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVRP 32 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEecH
Confidence 467777666655 45788999999999998763
No 212
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=42.51 E-value=70 Score=23.44 Aligned_cols=42 Identities=21% Similarity=0.149 Sum_probs=24.1
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEe-CCccchH-HH-HH--HHh-CCCcEEEccc
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVS-DGIMGFG-AK-AA--RIL-GIPDVQLWTA 146 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~-D~~~~~~-~~-vA--~~l-giP~i~~~~~ 146 (185)
...+.+++++ .+||+||+ -++.... .. +. ..+ ++|.+++.|=
T Consensus 78 ~~~l~~~l~~-------~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD 125 (169)
T PF06925_consen 78 ARRLIRLLRE-------FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTD 125 (169)
T ss_pred HHHHHHHHhh-------cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcC
Confidence 3456666655 48999995 4443333 32 21 223 5788777664
No 213
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=42.42 E-value=41 Score=28.69 Aligned_cols=31 Identities=32% Similarity=0.376 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
++|.++-.+..| ..+|..|+++||+|+.+-.
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDI 31 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEEC
Confidence 367777555555 6889999999999998854
No 214
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=42.22 E-value=31 Score=30.26 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=29.4
Q ss_pred ceEEEEcCCCC--C-ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQ--G-HITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~--G-H~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+++++|.-|. . =.++..+|++.|.+||.+|.|...+-
T Consensus 308 ~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 308 KKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 58888887654 2 24899999999999999999987663
No 215
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=42.17 E-value=44 Score=23.72 Aligned_cols=41 Identities=15% Similarity=0.221 Sum_probs=36.6
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
..+..|-+.|..|.+-+.|.-++.+.|.+.-.++.++|+..
T Consensus 44 ~g~Lql~i~pasGrrkLspt~emi~~l~~geIel~VLttqp 84 (144)
T PF10657_consen 44 YGKLQLTISPASGRRKLSPTPEMIDKLISGEIELFVLTTQP 84 (144)
T ss_pred CCceEEEEecCCCccccCCcHHHHHHHhcCceEEEEEccCC
Confidence 34678889999999999999999999999999999998764
No 216
>PRK04940 hypothetical protein; Provisional
Probab=42.15 E-value=73 Score=24.20 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=27.5
Q ss_pred CceEEEeCC-ccchHHHHHHHhCCCcEEEcccchHHHHH
Q 029948 116 QVTCVVSDG-IMGFGAKAARILGIPDVQLWTASACGFLA 153 (185)
Q Consensus 116 ~~D~vI~D~-~~~~~~~vA~~lgiP~i~~~~~~~~~~~~ 153 (185)
++.++|--. -..|+..+|+++|+|.|.+.|..--...+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv~P~~~L 98 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNLFPEENM 98 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCCChHHHH
Confidence 345666433 33668889999999999999977654433
No 217
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=41.82 E-value=75 Score=21.96 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=32.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
||++..-++.|=-.....+++.|+++|.+|-++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4777888888999999999999999999998887665
No 218
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=41.81 E-value=86 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.113 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEE-eCCccchHHHHH---HHhC--CCcEEEcccchHHH
Q 029948 99 APFLELLGKLNSAGNVPQVTCVV-SDGIMGFGAKAA---RILG--IPDVQLWTASACGF 151 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI-~D~~~~~~~~vA---~~lg--iP~i~~~~~~~~~~ 151 (185)
...+++++.+.+ .+||++| +|..-+ -..++ ++.| +|.|.|..-...+|
T Consensus 72 k~~~~~~~~i~~----~kpD~~i~IDsPdF-nl~vak~lrk~~p~i~iihYV~PsVWAW 125 (381)
T COG0763 72 KIRRELVRYILA----NKPDVLILIDSPDF-NLRVAKKLRKAGPKIKIIHYVSPSVWAW 125 (381)
T ss_pred HHHHHHHHHHHh----cCCCEEEEeCCCCC-chHHHHHHHHhCCCCCeEEEECcceeee
Confidence 344555555543 4799888 787442 33333 4556 99987766655543
No 219
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=41.29 E-value=38 Score=28.76 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCChHHHHHHHHHHHh-CCCeEEEEcCCc
Q 029948 19 QGHITPMMQLAKLLHS-KGFHVTFVNTEF 46 (185)
Q Consensus 19 ~GH~~P~l~La~~La~-rGh~Vt~it~~~ 46 (185)
+|++-..-.|||.|++ +|++|++...+.
T Consensus 11 yGDIGV~WRLArqLa~e~g~~VrLwvDdl 39 (371)
T TIGR03837 11 YGDIGVCWRLARQLAAEHGHQVRLWVDDL 39 (371)
T ss_pred CcchHHHHHHHHHHHHHhCCEEEEEECCH
Confidence 5889999999999997 699999998764
No 220
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=40.96 E-value=85 Score=21.43 Aligned_cols=33 Identities=21% Similarity=0.248 Sum_probs=24.5
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 12 IVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 12 l~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+++.. +.+.-.-+..+++.|+++|+.|..+..+
T Consensus 3 v~~HG-~~~~~~~~~~~~~~l~~~G~~v~~~~~~ 35 (145)
T PF12695_consen 3 VLLHG-WGGSRRDYQPLAEALAEQGYAVVAFDYP 35 (145)
T ss_dssp EEECT-TTTTTHHHHHHHHHHHHTTEEEEEESCT
T ss_pred EEECC-CCCCHHHHHHHHHHHHHCCCEEEEEecC
Confidence 34444 4456777999999999999998887443
No 221
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=40.70 E-value=40 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.422 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
-|.+.|++.|.++|.+|.+.=+--
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP~v 40 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDPYV 40 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-TTS
T ss_pred CHHHHHHHHHHHCCCEEEEECCcc
Confidence 689999999999999988864443
No 222
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=40.39 E-value=65 Score=25.44 Aligned_cols=43 Identities=21% Similarity=0.208 Sum_probs=36.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.-+++.-.||.|...-..+++...+++|..|.+++.......+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l 66 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL 66 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence 3566777799999999999999999999999999987765544
No 223
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=40.20 E-value=48 Score=26.06 Aligned_cols=32 Identities=19% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCh-HHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 20 GHI-TPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 20 GH~-~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
|+. .=...|.+.|.++ |++|.++.+....+.+
T Consensus 10 ~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~a~~~i 44 (234)
T TIGR02700 10 GHLLVESFQVMKELKREIEELRVSTFVSRAGEEVV 44 (234)
T ss_pred cHhHHHHHHHHHHHHhhcCCCeEEEEEChhHHhHH
Confidence 455 5788999999999 9999999888765544
No 224
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=40.14 E-value=49 Score=24.27 Aligned_cols=32 Identities=25% Similarity=0.233 Sum_probs=23.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+++++-.+- .-...++.|.+.|++||++...
T Consensus 14 ~~vlVvGGG~-----va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 14 KVVVIIGGGK-----IAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred CEEEEECCCH-----HHHHHHHHHHhCCCEEEEEcCc
Confidence 4566664443 3377899999999999999644
No 225
>PRK12404 stage V sporulation protein AD; Provisional
Probab=40.14 E-value=1.2e+02 Score=25.49 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=34.7
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEe-CCcc--chHHHHHHHhCCCcEEEcccchHHHHHHhhHHHHHHCCC
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVS-DGIM--GFGAKAARILGIPDVQLWTASACGFLAASQFPELVNRGI 165 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~-D~~~--~~~~~vA~~lgiP~i~~~~~~~~~~~~~~~~~~l~~~~~ 165 (185)
.+.++..+++..-.. ...|+++. |... ..+..+++++|||.+-+...+......+.--..+...|.
T Consensus 59 ~EA~~~AL~kAGI~~--~DID~i~vGdL~nQ~ipssfvar~LGIP~~gV~gACSTg~eAL~lAa~~VaSG~ 127 (334)
T PRK12404 59 EEACSRAIEKAKLRK--EDIQFFLAGDLMNQITPTSFAARTLGIPYLGLFGACSTSMEGLALAALIVNSGG 127 (334)
T ss_pred HHHHHHHHHHcCCCH--HHCCEEEEEecCCCcCcHHHHHHHhCCCccceeecCHHHHHHHHHHHHHHHcCC
Confidence 455555555421111 34788885 5442 234588999999997555544433222222233445554
No 226
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=40.12 E-value=55 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.316 Sum_probs=31.1
Q ss_pred CCCCceEE-EEcCCCC-CChHHHHHHHHHHHhCC---CeEEEEcCC
Q 029948 5 GVTKQHVI-VLPYPSQ-GHITPMMQLAKLLHSKG---FHVTFVNTE 45 (185)
Q Consensus 5 ~~~~~~il-~~~~p~~-GH~~P~l~La~~La~rG---h~Vt~it~~ 45 (185)
++++.|++ +++-++. ||+.-+-.|.+++++|| ..|.+++..
T Consensus 121 ~~g~lHlvGlvSDGGVHShidhl~allka~~erg~~ei~vH~~tDG 166 (531)
T KOG4513|consen 121 EDGTLHLVGLVSDGGVHSHIDHLQALLKALAERGAKEIRVHILTDG 166 (531)
T ss_pred cCCeEEEEEEecCCchhhhHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 34567776 5555554 99999999999999998 557777654
No 227
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=39.92 E-value=34 Score=25.37 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=25.8
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
....+|++++.++- -=-=-+.+||.|.++|++|+++.
T Consensus 23 ~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~ 59 (169)
T PF03853_consen 23 PKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYL 59 (169)
T ss_dssp CTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEE
Confidence 34578888888862 11234778999999999999954
No 228
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=39.88 E-value=1.9e+02 Score=22.87 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=28.6
Q ss_pred CceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 8 KQHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 8 ~~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
..+++.+++ +|.|=-.-...||..|++.|.+|-++=.
T Consensus 102 ~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~ 140 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDA 140 (274)
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 345554444 6668888899999999999999998843
No 229
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=39.86 E-value=53 Score=28.22 Aligned_cols=27 Identities=11% Similarity=0.161 Sum_probs=21.0
Q ss_pred CceEEEeCCccchHHHHHHHhCCCcEEEcc
Q 029948 116 QVTCVVSDGIMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 116 ~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~ 145 (185)
+||++|.+. ....+|+++|+|.+.+..
T Consensus 370 ~pdliig~~---~~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 370 EPELIFGTQ---MERHIGKRLDIPCAVISA 396 (430)
T ss_pred CCCEEEecc---hhhHHHHHcCCCEEEEeC
Confidence 688888876 456679999999986633
No 230
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.63 E-value=84 Score=25.32 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=31.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
-|+++..+|.|=..-...||..|+++|+.|.++..+.+
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 45566667779999999999999999999999987753
No 231
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=39.39 E-value=46 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=24.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+.|=-.-+..+++.|.+.||+|++++...
T Consensus 10 ~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 10 YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 444667788899999999999999987644
No 232
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=39.39 E-value=1.4e+02 Score=26.62 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
.=+.+|++.|.+.|+++ +++.++.+.+
T Consensus 11 ~~iv~lAk~L~~lGfeI--iATgGTak~L 37 (511)
T TIGR00355 11 TGIVEFAQGLVERGVEL--LSTGGTAKLL 37 (511)
T ss_pred ccHHHHHHHHHHCCCEE--EEechHHHHH
Confidence 44689999999999887 4677777665
No 233
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=39.36 E-value=53 Score=22.72 Aligned_cols=35 Identities=14% Similarity=0.365 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
..++.+++++.. +...++.++.|.+.|.+++++..
T Consensus 9 g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 9 GADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp SSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 457888888776 46779999999999999888743
No 234
>PRK11524 putative methyltransferase; Provisional
Probab=38.38 E-value=43 Score=27.05 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=31.9
Q ss_pred CceEEEeCCccchH--HHHHHHhCCCcEEEcccchHHHHHHhhH
Q 029948 116 QVTCVVSDGIMGFG--AKAARILGIPDVQLWTASACGFLAASQF 157 (185)
Q Consensus 116 ~~D~vI~D~~~~~~--~~vA~~lgiP~i~~~~~~~~~~~~~~~~ 157 (185)
...=+|.|+|++.+ ..+|+++|--+|.+-...-+.-.+...+
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 45567999999775 5689999999999998887664444433
No 235
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=38.35 E-value=1.1e+02 Score=23.06 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
+.-|.+++..|.|=..-.+.+|-+.+.+|++|.++
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~iv 39 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVI 39 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEE
Confidence 45788999999999999999999999999999654
No 236
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.17 E-value=50 Score=25.73 Aligned_cols=39 Identities=26% Similarity=0.388 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHhhCCCCCCce-EEEeCCccchHHHHHHHhCCCc
Q 029948 98 LAPFLELLGKLNSAGNVPQVT-CVVSDGIMGFGAKAARILGIPD 140 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D-~vI~D~~~~~~~~vA~~lgiP~ 140 (185)
.+.+++++..+.+ +..+ .+|+..|-..+..||.+||||.
T Consensus 90 T~Gi~eLv~~L~~----~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 90 TPGIRELVSRLHA----RGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCCHHHHHHHHHH----cCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 4677888887765 3445 4556777777889999999998
No 237
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=38.13 E-value=65 Score=26.51 Aligned_cols=38 Identities=8% Similarity=0.086 Sum_probs=27.9
Q ss_pred ceEEEEcC--CC-CCChHHHHHHHHHHHhC--CCeEEEEcCCc
Q 029948 9 QHVIVLPY--PS-QGHITPMMQLAKLLHSK--GFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~--p~-~GH~~P~l~La~~La~r--Gh~Vt~it~~~ 46 (185)
|||+++.. +. .|=-.-+..+++.|.++ ||+|++++...
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~ 43 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRND 43 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCC
Confidence 56776654 22 24447789999999999 89999887654
No 238
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=38.02 E-value=37 Score=27.89 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+||.|+-.+..| ..+|..|+++||+|+++....
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecHH
Confidence 578888666655 468899999999999987543
No 239
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=37.79 E-value=32 Score=26.90 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCCeEEEEcCCc
Q 029948 26 MQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~~ 46 (185)
..+|+.|+++||+|+.+-...
T Consensus 13 ~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 13 RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred HHHHHHHHhCCCceEEEEcCH
Confidence 679999999999999986543
No 240
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=37.71 E-value=36 Score=24.83 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=20.7
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
++.|++- ..+++.|.++||+|+.++-..
T Consensus 5 GatG~vG--~~l~~~L~~~~~~V~~~~R~~ 32 (183)
T PF13460_consen 5 GATGFVG--RALAKQLLRRGHEVTALVRSP 32 (183)
T ss_dssp TTTSHHH--HHHHHHHHHTTSEEEEEESSG
T ss_pred CCCChHH--HHHHHHHHHCCCEEEEEecCc
Confidence 3344443 458999999999999998554
No 241
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=37.45 E-value=72 Score=28.27 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=30.6
Q ss_pred eEEEEcCCCCCCh---HHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHI---TPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~---~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
+..|++.+-.|=+ .....|++.|.+||++||.+-.+.+.
T Consensus 2 KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPYl 43 (533)
T COG0504 2 KYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPYL 43 (533)
T ss_pred eEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccce
Confidence 5667776655444 77889999999999999999777654
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.21 E-value=65 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=31.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
-|+++-..|.|=..-...||..+..+|..|.+++.+.++
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R 41 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR 41 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence 355666677799999999999999999999999987653
No 243
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.06 E-value=68 Score=25.58 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+|.|=..-...||..|+++|.+|..|=
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID 37 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAID 37 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 788999999999999999999998883
No 244
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.97 E-value=66 Score=28.02 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 6 VTKQHVIVLPYPSQ--GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 6 ~~~~~il~~~~p~~--GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+...+|++++.|+- |.-+- .||.|+..||.++++...
T Consensus 264 ~~~P~V~Ilcgpgnnggdg~v---~gRHL~~~G~~~vi~~pk 302 (453)
T KOG2585|consen 264 HQWPLVAILCGPGNNGGDGLV---CGRHLAQHGYTPVIYYPK 302 (453)
T ss_pred CCCceEEEEeCCCCccchhHH---HHHHHHHcCceeEEEeec
Confidence 44567999999986 33333 999999999999888644
No 245
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=36.93 E-value=56 Score=26.77 Aligned_cols=31 Identities=23% Similarity=0.256 Sum_probs=24.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+|.|+-.+.+| .++++.|.++||+|++..-.
T Consensus 2 kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 2 KIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred eEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 56676666665 57899999999999998633
No 246
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=36.85 E-value=46 Score=25.31 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHI-TPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~-~P~l~La~~La~rGh~Vt~it 43 (185)
=+++.++|+.=|+ .|..+++..|.+.|.++..+.
T Consensus 35 V~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lv 69 (194)
T TIGR03264 35 VVAVAMSPGRRHITKPVCEITYALREAGIQTSVLV 69 (194)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3567888999998 899999999999998865553
No 247
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=36.80 E-value=34 Score=27.65 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.+-+++++.+.| --.++++.|++||++|.++.
T Consensus 5 ~~~~~lITGASsG---IG~~~A~~lA~~g~~liLva 37 (265)
T COG0300 5 KGKTALITGASSG---IGAELAKQLARRGYNLILVA 37 (265)
T ss_pred CCcEEEEECCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 3456677776655 34789999999999999986
No 248
>PLN02293 adenine phosphoribosyltransferase
Probab=36.67 E-value=97 Score=23.52 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=21.4
Q ss_pred CceEEE-eCCc-cchHHHHHHHhCCCcEEEc
Q 029948 116 QVTCVV-SDGI-MGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 116 ~~D~vI-~D~~-~~~~~~vA~~lgiP~i~~~ 144 (185)
++|+|+ .+.- ..++..+|.++|+|++..-
T Consensus 62 ~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~~r 92 (187)
T PLN02293 62 GISVVAGIEARGFIFGPPIALAIGAKFVPLR 92 (187)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHCCCEEEEE
Confidence 578888 4543 3567889999999987543
No 249
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=36.57 E-value=49 Score=29.16 Aligned_cols=43 Identities=19% Similarity=0.190 Sum_probs=33.6
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
..||++...++.+= .=...|.++|.++|++|.++.+++..+.+
T Consensus 70 ~k~IllgVtGsIAa-yka~~lvr~L~k~G~~V~VvmT~sA~~fv 112 (475)
T PRK13982 70 SKRVTLIIGGGIAA-YKALDLIRRLKERGAHVRCVLTKAAQQFV 112 (475)
T ss_pred CCEEEEEEccHHHH-HHHHHHHHHHHhCcCEEEEEECcCHHHHh
Confidence 36788877776443 47889999999999999999888765544
No 250
>PLN02650 dihydroflavonol-4-reductase
Probab=36.53 E-value=78 Score=25.95 Aligned_cols=36 Identities=28% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
|+|++. +| ++++. .|.+ -..|+++|.++|++|+.+.
T Consensus 1 ~~~~~k---~i-LVTGa-tGfI--Gs~l~~~L~~~G~~V~~~~ 36 (351)
T PLN02650 1 MGSQKE---TV-CVTGA-SGFI--GSWLVMRLLERGYTVRATV 36 (351)
T ss_pred CCCCCC---EE-EEeCC-cHHH--HHHHHHHHHHCCCEEEEEE
Confidence 777762 33 33333 3443 3467899999999998765
No 251
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.52 E-value=98 Score=24.13 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=28.0
Q ss_pred CCCCCCCCceEEEEcCCCCC-ChHHHHHHHHHHHhCCCeEEEEc
Q 029948 1 MGSIGVTKQHVIVLPYPSQG-HITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~G-H~~P~l~La~~La~rGh~Vt~it 43 (185)
|+....-+.|+++++..+.| - -=.+++++|+++|++|.+..
T Consensus 2 ~~~~~~~~~k~~lItGas~g~G--IG~a~a~~la~~G~~v~l~~ 43 (258)
T PRK07533 2 MQPLLPLAGKRGLVVGIANEQS--IAWGCARAFRALGAELAVTY 43 (258)
T ss_pred CCcccccCCCEEEEECCCCCCc--HHHHHHHHHHHcCCEEEEEe
Confidence 33333334578888887631 2 23889999999999987764
No 252
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=36.38 E-value=57 Score=25.97 Aligned_cols=29 Identities=10% Similarity=-0.128 Sum_probs=23.8
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.|--.-+..|+++|+++||.|++++....
T Consensus 15 gG~~~~~~~l~~~L~~~~~~v~~~~~~~~ 43 (365)
T cd03809 15 TGIGRYARELLRALLKLDPEEVLLLLPGA 43 (365)
T ss_pred CcHHHHHHHHHHHHHhcCCceEEEEecCc
Confidence 35556689999999999999999986654
No 253
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=36.38 E-value=44 Score=28.65 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=32.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNR 50 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~ 50 (185)
..||++.-.++. ...=...+.++|.++|++|.++.+++..+.
T Consensus 6 ~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~A~~f 47 (399)
T PRK05579 6 GKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEAAKKF 47 (399)
T ss_pred CCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHhHHHH
Confidence 457888777764 455778999999999999999988765543
No 254
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=36.30 E-value=1.1e+02 Score=22.43 Aligned_cols=40 Identities=30% Similarity=0.152 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEe--CCccchHHHHHHHhCCCcE
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVS--DGIMGFGAKAARILGIPDV 141 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~--D~~~~~~~~vA~~lgiP~i 141 (185)
..++++.+++.+. .++|+||. -.-+..+..+++++|+|.+
T Consensus 17 ~~i~~la~~I~~~---~~~d~vvgv~~GG~~fa~~L~~~L~~~~v 58 (156)
T PRK09177 17 RDARALAWRLLPA---GQWKGIIAVTRGGLVPAAILARELGIRLV 58 (156)
T ss_pred HHHHHHHHHHHhh---CCCCEEEEEecCCeehHHHHHHHcCCCce
Confidence 3445555555432 24787773 3344568899999999975
No 255
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=35.79 E-value=1.1e+02 Score=23.18 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=30.3
Q ss_pred CCceEEEEcC--CCCCChHHHHHHHHHHHh-CCCeEEEEcCC
Q 029948 7 TKQHVIVLPY--PSQGHITPMMQLAKLLHS-KGFHVTFVNTE 45 (185)
Q Consensus 7 ~~~~il~~~~--p~~GH~~P~l~La~~La~-rGh~Vt~it~~ 45 (185)
..++++.++. +|.|=-.-...||..|+. +|++|.++=.+
T Consensus 33 ~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D 74 (207)
T TIGR03018 33 KNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDAD 74 (207)
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3456665554 788988999999999997 69999998544
No 256
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=35.78 E-value=84 Score=22.83 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=26.3
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+-||.|=-.-...||..|+++|++|.++=.+
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3377888999999999999999999998443
No 257
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=35.74 E-value=3.1e+02 Score=24.11 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
...|=-.-...|++.|.++|.+|..+-+-
T Consensus 8 t~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 8 SSAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 34577788899999999999999988654
No 258
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=35.58 E-value=51 Score=26.88 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+++|.|+-.+..| ..+|+.|+++||+|+++...
T Consensus 4 ~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 4788888666555 57899999999999988644
No 259
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=35.46 E-value=85 Score=21.34 Aligned_cols=38 Identities=11% Similarity=0.347 Sum_probs=29.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
.++++-. ..|.-..+.+..+.+.++|..|..+|.....
T Consensus 55 d~vi~is-~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~ 92 (131)
T PF01380_consen 55 DLVIIIS-YSGETRELIELLRFAKERGAPVILITSNSES 92 (131)
T ss_dssp EEEEEEE-SSSTTHHHHHHHHHHHHTTSEEEEEESSTTS
T ss_pred ceeEeee-ccccchhhhhhhHHHHhcCCeEEEEeCCCCC
Confidence 3443333 5588899999999999999999888866544
No 260
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=35.39 E-value=48 Score=28.22 Aligned_cols=28 Identities=25% Similarity=0.340 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHHHhC-CCeEEEEcCCc
Q 029948 19 QGHITPMMQLAKLLHSK-GFHVTFVNTEF 46 (185)
Q Consensus 19 ~GH~~P~l~La~~La~r-Gh~Vt~it~~~ 46 (185)
.|++-..-.|||.|+++ |++|++.+.+.
T Consensus 11 fGDIGVcWRLArqLa~e~g~~VrLwvDdl 39 (374)
T PF10093_consen 11 FGDIGVCWRLARQLAAEHGQQVRLWVDDL 39 (374)
T ss_pred CcchHHHHHHHHHHHHHhCCeEEEEECCH
Confidence 48899999999999998 99999998764
No 261
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=35.32 E-value=39 Score=23.97 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCcc
Q 029948 26 MQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~~~ 47 (185)
.-+|..|++.||+|++++....
T Consensus 11 ~~~a~~L~~~g~~V~l~~r~~~ 32 (151)
T PF02558_consen 11 SLYAARLAQAGHDVTLVSRSPR 32 (151)
T ss_dssp HHHHHHHHHTTCEEEEEESHHH
T ss_pred HHHHHHHHHCCCceEEEEcccc
Confidence 3478999999999999987763
No 262
>PRK10481 hypothetical protein; Provisional
Probab=35.23 E-value=78 Score=24.94 Aligned_cols=45 Identities=13% Similarity=0.058 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccch--H-HHHHHHhCCCcEEEcccch
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGF--G-AKAARILGIPDVQLWTASA 148 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~-~~vA~~lgiP~i~~~~~~~ 148 (185)
.+.+..+++.. .+.|+||.|+.... . ..+.+.+|+|++......+
T Consensus 170 ~l~~aa~~L~~----~gaD~Ivl~C~G~~~~~~~~le~~lg~PVI~~n~a~a 217 (224)
T PRK10481 170 ELIDAGKELLD----QGADVIVLDCLGYHQRHRDLLQKALDVPVLLSNVLVA 217 (224)
T ss_pred HHHHHHHHhhc----CCCCEEEEeCCCcCHHHHHHHHHHHCcCEEcHHHHHH
Confidence 34444444433 47899999986643 2 3588899999998766544
No 263
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=35.20 E-value=46 Score=25.97 Aligned_cols=23 Identities=22% Similarity=0.120 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCCeEEEEcCCcch
Q 029948 26 MQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~~~~ 48 (185)
-.|+++|+..||+|++.++....
T Consensus 14 ~alA~~~a~ag~eV~igs~r~~~ 36 (211)
T COG2085 14 SALALRLAKAGHEVIIGSSRGPK 36 (211)
T ss_pred HHHHHHHHhCCCeEEEecCCChh
Confidence 57899999999999999776553
No 264
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=35.12 E-value=83 Score=26.21 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=29.7
Q ss_pred eEEE--EcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIV--LPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~--~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
-|.+ ++.+|.|=.--...|++.|.++|++|.+++
T Consensus 51 vIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ils 86 (325)
T PRK00652 51 VIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVS 86 (325)
T ss_pred EEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEEC
Confidence 4555 788999999999999999999999999986
No 265
>PRK13699 putative methylase; Provisional
Probab=35.05 E-value=1.7e+02 Score=22.79 Aligned_cols=42 Identities=17% Similarity=0.093 Sum_probs=30.9
Q ss_pred ceEEEeCCccchH--HHHHHHhCCCcEEEcccchHHHHHHhhHH
Q 029948 117 VTCVVSDGIMGFG--AKAARILGIPDVQLWTASACGFLAASQFP 158 (185)
Q Consensus 117 ~D~vI~D~~~~~~--~~vA~~lgiP~i~~~~~~~~~~~~~~~~~ 158 (185)
+.=+|.|+|++.+ ...|.++|.-++.+-....+.-...-.+-
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~ 206 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLA 206 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHH
Confidence 4457999999775 56779999999999887766554444443
No 266
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=34.95 E-value=1.1e+02 Score=26.64 Aligned_cols=41 Identities=22% Similarity=0.416 Sum_probs=34.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
+..|+++-.+|.|=..-...||+.|.++|++|.+++.+.+.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 34566777788899999999999999999999999877653
No 267
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=34.94 E-value=1.8e+02 Score=21.09 Aligned_cols=24 Identities=13% Similarity=0.221 Sum_probs=18.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcch
Q 029948 25 MMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
..++-+.|.++|+.+.++|.....
T Consensus 92 ~~~~L~~L~~~g~~~~i~s~~~~~ 115 (185)
T TIGR01990 92 IKNLLDDLKKNNIKIALASASKNA 115 (185)
T ss_pred HHHHHHHHHHCCCeEEEEeCCccH
Confidence 467788899999999998865433
No 268
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=34.77 E-value=60 Score=24.67 Aligned_cols=33 Identities=15% Similarity=0.144 Sum_probs=23.5
Q ss_pred CceEEEeCCcc--chHHHHHHHhCCCcEEEcccch
Q 029948 116 QVTCVVSDGIM--GFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 116 ~~D~vI~D~~~--~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
+||+||..... .....-..+.++|++.+.....
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 79999976655 3345566788999999888764
No 269
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=34.72 E-value=1.8e+02 Score=21.98 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=25.4
Q ss_pred eEEEeCCcc-chHHHHHHHhCCCcEEEcccchHHHHH
Q 029948 118 TCVVSDGIM-GFGAKAARILGIPDVQLWTASACGFLA 153 (185)
Q Consensus 118 D~vI~D~~~-~~~~~vA~~lgiP~i~~~~~~~~~~~~ 153 (185)
.++|-..+. .++..+|+++|+|.+.+.|..-....+
T Consensus 61 ~~liGSSlGG~~A~~La~~~~~~avLiNPav~p~~~l 97 (187)
T PF05728_consen 61 VVLIGSSLGGFYATYLAERYGLPAVLINPAVRPYELL 97 (187)
T ss_pred eEEEEEChHHHHHHHHHHHhCCCEEEEcCCCCHHHHH
Confidence 355544444 446789999999999999877655443
No 270
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=34.57 E-value=91 Score=26.31 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=21.0
Q ss_pred CCceEEEeCCccchH----------HHHHHHhCCCcEE
Q 029948 115 PQVTCVVSDGIMGFG----------AKAARILGIPDVQ 142 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~----------~~vA~~lgiP~i~ 142 (185)
-+||++|+.+.+..+ ..|.++++||.++
T Consensus 79 ~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vt 116 (349)
T PF07355_consen 79 LKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVT 116 (349)
T ss_pred cCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEE
Confidence 379999998866431 2466799999985
No 271
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=34.53 E-value=56 Score=27.28 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEe--CCccchH-HHHHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVS--DGIMGFG-AKAARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~--D~~~~~~-~~vA~~lgiP~i~~~~~ 146 (185)
..+.+++++. +||+||+ |-+...+ ...|..++||++-+-..
T Consensus 57 ~~~~~~~~~~-------~Pd~Vlv~GD~~~~la~alaA~~~~ipv~HieaG 100 (346)
T PF02350_consen 57 IELADVLERE-------KPDAVLVLGDRNEALAAALAAFYLNIPVAHIEAG 100 (346)
T ss_dssp HHHHHHHHHH-------T-SEEEEETTSHHHHHHHHHHHHTT-EEEEES--
T ss_pred HHHHHHHHhc-------CCCEEEEEcCCchHHHHHHHHHHhCCCEEEecCC
Confidence 4566666653 6898874 7766554 67889999998876655
No 272
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=34.34 E-value=90 Score=23.62 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=35.0
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
...++|++.-.||.|-..-...++..|.+.|++|-=+.++.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~E 43 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPE 43 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeee
Confidence 34689999999999999999999999999999996554444
No 273
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=34.25 E-value=1e+02 Score=26.83 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=33.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
.-|+++-.+|.|=..-...||..|..+|++|.+++.+.++
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 3456666788899999999999999999999999987654
No 274
>PRK07773 replicative DNA helicase; Validated
Probab=34.21 E-value=2.8e+02 Score=26.55 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=33.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchhhhh
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHNRFI 52 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~~ 52 (185)
+++..-|+.|=..-.+.++...+.+ |..|.+++.+.....+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~ql~ 262 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQLV 262 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHHHH
Confidence 4556668999999999999998865 78999998876655543
No 275
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=34.15 E-value=71 Score=28.37 Aligned_cols=26 Identities=12% Similarity=0.162 Sum_probs=21.1
Q ss_pred CceEEEeCCccchHHHHHHHhCCCcEEEc
Q 029948 116 QVTCVVSDGIMGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 116 ~~D~vI~D~~~~~~~~vA~~lgiP~i~~~ 144 (185)
+||+||.+. +...+|+++|||++.+.
T Consensus 374 ~pdliiGs~---~er~ia~~lgiP~~~is 399 (513)
T CHL00076 374 EPSAIFGTQ---MERHIGKRLDIPCGVIS 399 (513)
T ss_pred CCCEEEECc---hhhHHHHHhCCCEEEee
Confidence 699999886 56677999999997644
No 276
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=33.87 E-value=3.1e+02 Score=23.57 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=60.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCC-CeEEEEcCCcchh-hhhcccCCCCCCCCCCeeEEec--CC-CCCCCCCCCCCCH
Q 029948 12 IVLPYPSQGHITPMMQLAKLLHSKG-FHVTFVNTEFNHN-RFIRNKGPDSLKGLPDFRFETI--PD-GLPPSDRDATQDL 86 (185)
Q Consensus 12 l~~~~p~~GH~~P~l~La~~La~rG-h~Vt~it~~~~~~-~~~~~~~~~~~~~~~~i~~~~l--~~-~~~~~~~~~~~~~ 86 (185)
+++-+++.=-+.=|.++.+++.+.+ .+..++.+.-..+ ..... -++...+ |+ ++.. .......
T Consensus 6 v~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~----------~le~~~i~~pdy~L~i--~~~~~tl 73 (383)
T COG0381 6 VLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQ----------VLELFGIRKPDYDLNI--MKPGQTL 73 (383)
T ss_pred EEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHH----------HHHHhCCCCCCcchhc--cccCCCH
Confidence 3445677788889999999999997 6666665554331 22111 0111111 11 0100 0011222
Q ss_pred HHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEe--CCccchH-HHHHHHhCCCcEEEcc
Q 029948 87 PALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVS--DGIMGFG-AKAARILGIPDVQLWT 145 (185)
Q Consensus 87 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~--D~~~~~~-~~vA~~lgiP~i~~~~ 145 (185)
...... +-..+.+++++. +||+|++ |.....+ ..+|-+.+||+.-.-.
T Consensus 74 ~~~t~~----~i~~~~~vl~~~-------kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEA 124 (383)
T COG0381 74 GEITGN----IIEGLSKVLEEE-------KPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEA 124 (383)
T ss_pred HHHHHH----HHHHHHHHHHhh-------CCCEEEEeCCcchHHHHHHHHHHhCCceEEEec
Confidence 221111 235667777763 7998874 7766555 6678899999976543
No 277
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=33.72 E-value=60 Score=26.11 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.+++++..+. | +.|++.+++.|.++|.+|+++-....
T Consensus 99 ~~~llIaGGi-G-iaPl~~l~~~l~~~~~~v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVGGGV-G-IAPVYPIAKALKEAGNKVITIIGARN 135 (281)
T ss_pred CeEEEEeCcC-c-HHHHHHHHHHHHHCCCeEEEEEecCC
Confidence 4677776443 3 89999999999999999998865544
No 278
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=33.64 E-value=56 Score=26.86 Aligned_cols=42 Identities=5% Similarity=0.104 Sum_probs=37.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
||+++-..+.|++.-..++.+.|.++ +.+|++++.+.+.+-+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~ 44 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPIL 44 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHH
Confidence 58899999999999999999999997 7899999998776544
No 279
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=33.50 E-value=44 Score=31.09 Aligned_cols=34 Identities=24% Similarity=0.076 Sum_probs=28.3
Q ss_pred CCceEEEeCCccch--HHHHHHHhCCCcEEEcccch
Q 029948 115 PQVTCVVSDGIMGF--GAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 115 ~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~~~ 148 (185)
.-+|+||+|..+.. ...+|+++|.+.|.+++-..
T Consensus 264 G~~D~~vvD~qCi~~~I~eiA~kyG~g~I~tt~r~~ 299 (731)
T cd01916 264 GIADVVVVDEQCIRADILEEAQKLGIPVIATNDKIM 299 (731)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEechhhh
Confidence 36899999998854 57899999999999887554
No 280
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=33.32 E-value=76 Score=26.03 Aligned_cols=36 Identities=17% Similarity=0.048 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCC-----hHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGH-----ITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH-----~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|||++++.....+ -.-+..|+++|.++ |+|++++..
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~ 41 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFG 41 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCC
Confidence 4677665433222 25577999999987 788777654
No 281
>PLN02778 3,5-epimerase/4-reductase
Probab=33.27 E-value=1.4e+02 Score=24.12 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=24.1
Q ss_pred CCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 4 IGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 4 ~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.+..+++|++.-.. |.+- ..|++.|.++||+|++..
T Consensus 5 ~~~~~~kiLVtG~t--GfiG--~~l~~~L~~~g~~V~~~~ 40 (298)
T PLN02778 5 AGSATLKFLIYGKT--GWIG--GLLGKLCQEQGIDFHYGS 40 (298)
T ss_pred CCCCCCeEEEECCC--CHHH--HHHHHHHHhCCCEEEEec
Confidence 35666787765433 4332 357889999999998653
No 282
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=33.21 E-value=84 Score=23.69 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=24.7
Q ss_pred eEEEEcCC----CCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYP----SQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p----~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+|.++.+- ...+..-..+|++.|+++||.+..=.
T Consensus 2 ~i~V~~~s~~~~~~~~~~~A~~lG~~la~~g~~lV~GG 39 (178)
T TIGR00730 2 TVCVYCGSSPGGNAAYKELAAELGAYLAGQGWGLVYGG 39 (178)
T ss_pred EEEEECcCCCCCCcHHHHHHHHHHHHHHHCCCEEEECC
Confidence 56666653 33556788899999999998876533
No 283
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.12 E-value=69 Score=24.89 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch--HHH-HHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAK-AARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~-vA~~lgiP~i~~~~~ 146 (185)
..++++++ -+||+||....... ... +.+..|+|++.+...
T Consensus 65 ~n~E~i~~--------l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 65 PNYEKIAA--------LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CCHHHHHh--------cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 45666664 27999997654432 233 444589999887754
No 284
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=33.10 E-value=1.1e+02 Score=22.93 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=34.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
...++++-.+|.|=-.-...+++++..+|+.|.+++.......+
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45788888889988888999999999999999999877655554
No 285
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=32.90 E-value=60 Score=27.71 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=26.5
Q ss_pred CCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 5 GVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 5 ~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.+++.||+++-.+..| +..++.|...+++||++....+
T Consensus 7 ~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred CCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCCC
Confidence 4566788887665544 3457888766899999976543
No 286
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=32.72 E-value=1.3e+02 Score=21.33 Aligned_cols=44 Identities=16% Similarity=0.170 Sum_probs=36.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+.||++-+..+-+|=.=--=++..|.+.|++|.........+.+
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~ 45 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEI 45 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHH
Confidence 57899999999999998888899999999999998765443333
No 287
>PTZ00445 p36-lilke protein; Provisional
Probab=32.62 E-value=48 Score=26.01 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=23.6
Q ss_pred CChHH-HHHHHHHHHhCCCeEEEEcCCcc
Q 029948 20 GHITP-MMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 20 GH~~P-~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+|..| +..+.++|.++|..|+++|-...
T Consensus 74 ~~~tpefk~~~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 74 TSVTPDFKILGKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred ccCCHHHHHHHHHHHHCCCeEEEEEccch
Confidence 45667 88999999999999999986554
No 288
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=32.58 E-value=78 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.055 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch-HHHHHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF-GAKAARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~-~~~vA~~lgiP~i~~~~~ 146 (185)
..++++++ -+||+||....... ..+--++.|+|++.+...
T Consensus 51 ~n~E~l~~--------l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 51 PNVEKIVA--------LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CCHHHHhc--------cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 45666654 27999997553322 345557889998877643
No 289
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=32.57 E-value=66 Score=20.57 Aligned_cols=30 Identities=30% Similarity=0.281 Sum_probs=20.5
Q ss_pred CceEEEeCCcc--chHHHHHHHhCCCcEEEcc
Q 029948 116 QVTCVVSDGIM--GFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 116 ~~D~vI~D~~~--~~~~~vA~~lgiP~i~~~~ 145 (185)
+...||.+.-. +-+..+|+++|||++.-..
T Consensus 30 ~~~Giv~~~Gg~~SH~aIlAr~~giP~ivg~~ 61 (80)
T PF00391_consen 30 RVAGIVTEEGGPTSHAAILARELGIPAIVGVG 61 (80)
T ss_dssp TSSEEEESSSSTTSHHHHHHHHTT-EEEESTT
T ss_pred heEEEEEEcCCccchHHHHHHHcCCCEEEeec
Confidence 45677765533 4467899999999987554
No 290
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=32.47 E-value=83 Score=27.84 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.2
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~ 143 (185)
.+||+||.+. +...+|+++|||++.+
T Consensus 363 ~~pdliiG~~---~er~~a~~lgip~~~i 388 (511)
T TIGR01278 363 LEPELVLGTQ---MERHSAKRLDIPCGVI 388 (511)
T ss_pred cCCCEEEECh---HHHHHHHHcCCCEEEe
Confidence 3689999886 5677899999999855
No 291
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=32.46 E-value=51 Score=29.13 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
||+++-.+..| +.=|.+|+++||+||++=....
T Consensus 2 rVai~GaG~Ag-----L~~a~~La~~g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAG-----LAAAYELADAGYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHH-----HHHHHHHHhCCCceEEEeccCc
Confidence 55555444433 6678999999999999855443
No 292
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=32.45 E-value=1.1e+02 Score=23.43 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+.++++++..+. ---..++++|+++|++|+++....
T Consensus 4 ~~~~ilITGas~---GiG~aia~~l~~~G~~v~~~~~~~ 39 (251)
T COG1028 4 SGKVALVTGASS---GIGRAIARALAREGARVVVAARRS 39 (251)
T ss_pred CCCEEEEeCCCC---HHHHHHHHHHHHCCCeEEEEcCCC
Confidence 457788888776 356789999999999988887553
No 293
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=32.14 E-value=37 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 24 PMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 24 P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
-.+-|+..|.++||+|++..++...+.+
T Consensus 15 ~alYl~~~Lk~~G~~v~Va~npAA~kLl 42 (139)
T PF09001_consen 15 SALYLSYKLKKKGFEVVVAGNPAALKLL 42 (139)
T ss_dssp HHHHHHHHHHCTTEEEEEEE-HHHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEecCHHHHhHh
Confidence 4578999999999999999988766554
No 294
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=31.94 E-value=66 Score=26.16 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=27.4
Q ss_pred eEEEEcCCCCCCh---HHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 10 HVIVLPYPSQGHI---TPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 10 ~il~~~~p~~GH~---~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
|..|++++-.|=+ .-...|++.|.+||++|+.+-.+.+.
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPYl 43 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPYL 43 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-SS
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecccc
Confidence 5667777665544 67889999999999999999766654
No 295
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=31.89 E-value=50 Score=25.81 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=16.1
Q ss_pred HHHHHHHHhCCCeEEEEc
Q 029948 26 MQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it 43 (185)
..+|++|+++|++|+++.
T Consensus 29 ~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 29 KIITETFLSAGHEVTLVT 46 (227)
T ss_pred HHHHHHHHHCCCEEEEEc
Confidence 678999999999999875
No 296
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=31.83 E-value=1.3e+02 Score=22.46 Aligned_cols=30 Identities=10% Similarity=-0.123 Sum_probs=20.1
Q ss_pred CCceEEEeCCccc--h----HHHHHHHhCCCcEEEcc
Q 029948 115 PQVTCVVSDGIMG--F----GAKAARILGIPDVQLWT 145 (185)
Q Consensus 115 ~~~D~vI~D~~~~--~----~~~vA~~lgiP~i~~~~ 145 (185)
++| ++|+..... . ...+++++|+|++....
T Consensus 28 KRP-vIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 28 KRP-LLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CCc-EEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 467 666665442 2 24688999999997664
No 297
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.72 E-value=1e+02 Score=24.14 Aligned_cols=34 Identities=12% Similarity=0.082 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.|+++++..+.|. ---.+++++|+++|++|.+..
T Consensus 8 ~k~~lITGas~~~-GIG~a~a~~la~~G~~v~~~~ 41 (260)
T PRK06603 8 GKKGLITGIANNM-SISWAIAQLAKKHGAELWFTY 41 (260)
T ss_pred CcEEEEECCCCCc-chHHHHHHHHHHcCCEEEEEe
Confidence 4788999887621 134688999999999988764
No 298
>PRK06835 DNA replication protein DnaC; Validated
Probab=31.67 E-value=71 Score=26.62 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=34.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
..++++-.+|.|=.+=...+|++|.++|+.|.+++.......+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 4677777788888888889999999999999999876654433
No 299
>PLN02686 cinnamoyl-CoA reductase
Probab=31.67 E-value=1.1e+02 Score=25.48 Aligned_cols=34 Identities=9% Similarity=0.140 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.+.+++++.+ | .--..|+++|+++||+|+++..
T Consensus 52 ~~k~VLVTGat-G--fIG~~lv~~L~~~G~~V~~~~r 85 (367)
T PLN02686 52 EARLVCVTGGV-S--FLGLAIVDRLLRHGYSVRIAVD 85 (367)
T ss_pred CCCEEEEECCc-h--HHHHHHHHHHHHCCCEEEEEeC
Confidence 34555666554 4 2346788999999999987643
No 300
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=31.60 E-value=61 Score=26.75 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+.+|+++-.+-.| +..|..|+++|++|+++-..
T Consensus 3 ~~~~vvVIGgGi~G-----ls~A~~La~~G~~V~vie~~ 36 (387)
T COG0665 3 MKMDVVIIGGGIVG-----LSAAYYLAERGADVTVLEAG 36 (387)
T ss_pred CcceEEEECCcHHH-----HHHHHHHHHcCCEEEEEecC
Confidence 35688888766667 88999999999999998543
No 301
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=31.59 E-value=1.3e+02 Score=25.02 Aligned_cols=48 Identities=17% Similarity=0.067 Sum_probs=0.0
Q ss_pred HHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccch----HHHHHHHh------CCCcEEEcc
Q 029948 89 LCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGF----GAKAARIL------GIPDVQLWT 145 (185)
Q Consensus 89 ~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~----~~~vA~~l------giP~i~~~~ 145 (185)
....+...+...+.+++++ .+||+||+ ..++ ...++.++ ++|+++..+
T Consensus 80 ~~~~~~~~~~~~l~~~i~~-------~~pDvIi~--thp~~~~~~~~~l~~~~~~~~~~~p~~~~~t 137 (382)
T PLN02605 80 YFAATSAFVAREVAKGLMK-------YKPDIIVS--VHPLMQHVPLRVLRWQGKELGKKIPFTTVVT 137 (382)
T ss_pred HHHHHHHHHHHHHHHHHHh-------cCcCEEEE--eCcCcccCHHHHHHHHhhccCCCCCEEEEEC
No 302
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=31.52 E-value=1.1e+02 Score=24.92 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=22.6
Q ss_pred CCceEEE-eCCc-cchHHHHHHHhCCCcEEEc
Q 029948 115 PQVTCVV-SDGI-MGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 115 ~~~D~vI-~D~~-~~~~~~vA~~lgiP~i~~~ 144 (185)
.++|+|+ .+.- .+.|..+|.++|+|++..=
T Consensus 127 ~~iD~VvgvetkGIpLA~avA~~L~vp~vivR 158 (268)
T TIGR01743 127 REIDAVMTVATKGIPLAYAVASVLNVPLVIVR 158 (268)
T ss_pred CCCCEEEEEccchHHHHHHHHHHHCCCEEEEE
Confidence 3689998 4443 3667889999999988754
No 303
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=31.39 E-value=39 Score=26.83 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 27 QLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 27 ~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
-+|..|++.||+||++.-....+.+
T Consensus 5 ~~a~~L~~~G~~V~l~~r~~~~~~i 29 (293)
T TIGR00745 5 LYGAYLARAGHDVTLLARGEQLEAL 29 (293)
T ss_pred HHHHHHHhCCCcEEEEecHHHHHHH
Confidence 4788999999999999865333333
No 304
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=31.10 E-value=70 Score=23.84 Aligned_cols=25 Identities=8% Similarity=0.116 Sum_probs=19.2
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
-|++. +|+++|.++|.+|.+++.+.
T Consensus 115 D~DF~---~Lv~~lre~G~~V~v~g~~~ 139 (160)
T TIGR00288 115 DADFL---PVINKAKENGKETIVIGAEP 139 (160)
T ss_pred cHhHH---HHHHHHHHCCCEEEEEeCCC
Confidence 35655 56788889999999998654
No 305
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=31.02 E-value=50 Score=26.28 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=27.4
Q ss_pred ceEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQ--GHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~--GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+|++++.+|- |+ -+.+||.|.++|++|+++..
T Consensus 61 ~~V~VlcG~GNNGGD---Glv~AR~L~~~G~~V~v~~~ 95 (246)
T PLN03050 61 PRVLLVCGPGNNGGD---GLVAARHLAHFGYEVTVCYP 95 (246)
T ss_pred CeEEEEECCCCCchh---HHHHHHHHHHCCCeEEEEEc
Confidence 58999999875 44 36789999999999999873
No 306
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=30.68 E-value=89 Score=25.58 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=26.7
Q ss_pred eEE-EEcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVI-VLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il-~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+|+ +++.... |--+-+..|++.|.++||++++++..
T Consensus 3 ~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~ 40 (374)
T TIGR03088 3 LIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALT 40 (374)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcC
Confidence 444 4444443 55599999999999999999888743
No 307
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=30.65 E-value=41 Score=26.71 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.8
Q ss_pred CceEEE-eCCccch-HHHHHHHhCCCcEEEcccchH
Q 029948 116 QVTCVV-SDGIMGF-GAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 116 ~~D~vI-~D~~~~~-~~~vA~~lgiP~i~~~~~~~~ 149 (185)
.+|||| .|..-.. +..-|.+++||.|...=+.+.
T Consensus 173 ~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDtN~~ 208 (251)
T KOG0832|consen 173 TPDLVVVLNPEENHSAILEAAKMAIPTIGIVDTNCN 208 (251)
T ss_pred CcceeEecCcccccHHHHHHHHhCCCeEEEecCCCC
Confidence 468877 5887644 677899999999987766653
No 308
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=30.58 E-value=60 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.058 Sum_probs=32.0
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+.||++...++.+=+-- ..|.|.|. +|++|.++.+++..+.+
T Consensus 19 ~k~IllgVtGSIAAyk~-~~lvr~L~-~g~~V~VvmT~~A~~FI 60 (209)
T PLN02496 19 KPRILLAASGSVAAIKF-GNLCHCFS-EWAEVRAVVTKASLHFI 60 (209)
T ss_pred CCEEEEEEeCHHHHHHH-HHHHHHhc-CCCeEEEEEChhHhhhc
Confidence 56888888777655543 66899998 59999999888776555
No 309
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=30.55 E-value=49 Score=27.40 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=23.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+..++++.+.| ---+.|++||+||.+|.+++
T Consensus 50 ~WAVVTGaTDG---IGKayA~eLAkrG~nvvLIs 80 (312)
T KOG1014|consen 50 SWAVVTGATDG---IGKAYARELAKRGFNVVLIS 80 (312)
T ss_pred CEEEEECCCCc---chHHHHHHHHHcCCEEEEEe
Confidence 66677776654 23578999999999988876
No 310
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=30.55 E-value=45 Score=26.92 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
||+.| +...+.|++.||++.++..
T Consensus 16 Gh~~~-l~~~~~lq~~g~~~~~~I~ 39 (273)
T cd00395 16 GHLIG-LLTFRRFQHAGHRPIFLIG 39 (273)
T ss_pred HHHHH-HHHHHHHHHCCCCEEEEEe
Confidence 99999 7777889999999887654
No 311
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=30.52 E-value=1.3e+02 Score=22.71 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEE
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTF 41 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~ 41 (185)
...+++-.-..|--.....+|+.|+++|+.|.+
T Consensus 14 ~~~Vvv~~d~~G~~~~~~~~ad~lA~~Gy~v~~ 46 (218)
T PF01738_consen 14 RPAVVVIHDIFGLNPNIRDLADRLAEEGYVVLA 46 (218)
T ss_dssp EEEEEEE-BTTBS-HHHHHHHHHHHHTT-EEEE
T ss_pred CCEEEEEcCCCCCchHHHHHHHHHHhcCCCEEe
Confidence 344444455668778888999999999976665
No 312
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=30.46 E-value=2.4e+02 Score=25.20 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 22 ITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 22 ~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
-.=+.+|++.|.+.|+++ +++.++.+.+
T Consensus 14 K~~iv~lAk~L~~lGfeI--~AT~GTak~L 41 (513)
T PRK00881 14 KTGIVEFAKALVELGVEI--LSTGGTAKLL 41 (513)
T ss_pred cccHHHHHHHHHHCCCEE--EEcchHHHHH
Confidence 445789999999999887 4667777665
No 313
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=30.43 E-value=1.3e+02 Score=22.81 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=22.3
Q ss_pred CceEEEe-C-CccchHHHHHHHhCCCcEEEcc
Q 029948 116 QVTCVVS-D-GIMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 116 ~~D~vI~-D-~~~~~~~~vA~~lgiP~i~~~~ 145 (185)
++|+|+. + .-.+.+..+|+.+|+|++...-
T Consensus 64 ~~d~Ivgi~~gG~~~A~~la~~L~~~~~~~rk 95 (202)
T PRK00455 64 EFDVVAGPATGGIPLAAAVARALDLPAIFVRK 95 (202)
T ss_pred CCCEEEecccCcHHHHHHHHHHhCCCEEEEec
Confidence 6888883 3 3446678899999999986543
No 314
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=30.39 E-value=54 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.3
Q ss_pred HHHHHHHHhCCCeEEEEcCC
Q 029948 26 MQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~ 45 (185)
+..|..|+++|++|+++-..
T Consensus 12 ~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 12 LSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp HHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHCCCeEEEEeec
Confidence 56889999999999999655
No 315
>CHL00194 ycf39 Ycf39; Provisional
Probab=30.39 E-value=1.2e+02 Score=24.62 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+|++. ++.|.+ -..|+++|.++||+|+.++-
T Consensus 2 kIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 2 SLLVI--GATGTL--GRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred EEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEc
Confidence 44443 344533 35688999999999998863
No 316
>PRK08939 primosomal protein DnaI; Reviewed
Probab=30.36 E-value=89 Score=25.69 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
..+.++-.+|.|=-.=+..+|++|.++|..|++++.+.....+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 4678887888888888999999999999999999776544433
No 317
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=30.18 E-value=1.4e+02 Score=23.96 Aligned_cols=44 Identities=14% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~ 146 (185)
..+.++.+.+++ .+..||+++...+- +..+|++.|++.+.+.+.
T Consensus 207 ~~l~~l~~~ik~----~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l 252 (282)
T cd01017 207 KQLAELVEFVKK----SDVKYIFFEENASSKIAETLAKETGAKLLVLNPL 252 (282)
T ss_pred HHHHHHHHHHHH----cCCCEEEEeCCCChHHHHHHHHHcCCcEEEeccc
Confidence 355666666654 46789999887754 356999999998876653
No 318
>PRK06523 short chain dehydrogenase; Provisional
Probab=30.11 E-value=1.4e+02 Score=23.01 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=23.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.++++..+.| --..++++|+++|++|.++.-
T Consensus 10 k~vlItGas~g---IG~~ia~~l~~~G~~v~~~~r 41 (260)
T PRK06523 10 KRALVTGGTKG---IGAATVARLLEAGARVVTTAR 41 (260)
T ss_pred CEEEEECCCCc---hhHHHHHHHHHCCCEEEEEeC
Confidence 55666665432 337899999999999887753
No 319
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=30.07 E-value=72 Score=25.08 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEccc
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWTA 146 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~ 146 (185)
.++++.+.+.+ .+..+|+.+....- +..+|++.|+|.+.+.+.
T Consensus 187 ~l~~l~~~ik~----~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 187 DLAELIKLIKE----NKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHHHHHHHH----TT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHHHHHHhhh----cCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 45566666554 46889999887655 356899999999887777
No 320
>PRK06114 short chain dehydrogenase; Provisional
Probab=29.96 E-value=1e+02 Score=23.74 Aligned_cols=33 Identities=18% Similarity=0.165 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+.++++..+.| --..++++|+++|++|.++..
T Consensus 8 ~k~~lVtG~s~g---IG~~ia~~l~~~G~~v~~~~r 40 (254)
T PRK06114 8 GQVAFVTGAGSG---IGQRIAIGLAQAGADVALFDL 40 (254)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCEEEEEeC
Confidence 467777776654 567899999999999988753
No 321
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=29.86 E-value=99 Score=26.52 Aligned_cols=27 Identities=15% Similarity=0.047 Sum_probs=21.4
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEEc
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~ 144 (185)
.++|++|.. +.+..+|+++|||.+-+.
T Consensus 349 ~~pDl~Ig~---s~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 349 YRPDLAIGT---TPLVQYAKEKGIPALYYT 375 (416)
T ss_pred cCCCEEEeC---ChhhHHHHHhCCCEEEec
Confidence 379999976 346779999999997544
No 322
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=29.82 E-value=1e+02 Score=26.59 Aligned_cols=26 Identities=23% Similarity=0.635 Sum_probs=20.9
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~ 143 (185)
.++|++|.+. +...+|+++|||++-.
T Consensus 371 ~~~dliiG~s---~~~~~a~~~~ip~~~~ 396 (429)
T cd03466 371 LKIDVLIGNS---YGRRIAEKLGIPLIRI 396 (429)
T ss_pred cCCCEEEECc---hhHHHHHHcCCCEEEe
Confidence 3689999876 3578999999999854
No 323
>PLN02775 Probable dihydrodipicolinate reductase
Probab=29.70 E-value=1.2e+02 Score=24.86 Aligned_cols=28 Identities=21% Similarity=0.350 Sum_probs=13.6
Q ss_pred CceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEE
Q 029948 8 KQHVIVLPYPSQ-GHITPMMQLAKLLHSKGFHVT 40 (185)
Q Consensus 8 ~~~il~~~~p~~-GH~~P~l~La~~La~rGh~Vt 40 (185)
..+|++.-.+|. |+ ..++...+.|.++.
T Consensus 11 ~i~V~V~Ga~G~MG~-----~~~~av~~~~~~Lv 39 (286)
T PLN02775 11 AIPIMVNGCTGKMGH-----AVAEAAVSAGLQLV 39 (286)
T ss_pred CCeEEEECCCChHHH-----HHHHHHhcCCCEEE
Confidence 346666555553 32 34444444555543
No 324
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=29.66 E-value=1.4e+02 Score=26.05 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=35.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
...|+++-.+|.|=..-+..||..|..+|..|.+++.+.++
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 35677888888899999999999999999999999887653
No 325
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=29.64 E-value=1.4e+02 Score=23.14 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=23.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+.++++..+.| --..+++.|+++|++|.++..
T Consensus 9 ~k~vlItG~s~g---IG~~la~~l~~~G~~v~~~~~ 41 (266)
T PRK06171 9 GKIIIVTGGSSG---IGLAIVKELLANGANVVNADI 41 (266)
T ss_pred CCEEEEeCCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 356777765532 236789999999999988753
No 326
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.63 E-value=76 Score=25.13 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=20.8
Q ss_pred CCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 19 QGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 19 ~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.|-+- ..|+++|.++||+|..+....
T Consensus 9 tGfiG--~~l~~~L~~~g~~V~~~~r~~ 34 (314)
T COG0451 9 AGFIG--SHLVERLLAAGHDVRGLDRLR 34 (314)
T ss_pred cccHH--HHHHHHHHhCCCeEEEEeCCC
Confidence 45554 889999999999999987543
No 327
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.53 E-value=80 Score=22.49 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEEcC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGF-HVTFVNT 44 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh-~Vt~it~ 44 (185)
.+++++.+++...+|.--+-.+.++|.++|. ++.++..
T Consensus 52 ~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivG 90 (132)
T TIGR00640 52 ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVG 90 (132)
T ss_pred cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEe
Confidence 4678888888888999999999999999986 5666554
No 328
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=29.49 E-value=29 Score=33.04 Aligned_cols=75 Identities=20% Similarity=0.286 Sum_probs=47.3
Q ss_pred CCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEE
Q 029948 63 LPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQ 142 (185)
Q Consensus 63 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~ 142 (185)
+|.++|-++|++-.+.+ ...++..+-+++.+...+.+++-++++++ .|.|+.|+|...- -+.+.+.-|...++
T Consensus 686 ~PpFRFGTVpngSTE~n--iR~Nyp~MHeYM~kyNq~~v~dal~sLK~----gKLDAFIyDaAVL-nY~agkDegCKLvT 758 (1258)
T KOG1053|consen 686 YPPFRFGTVPNGSTERN--IRSNYPEMHEYMVKYNQPGVEDALESLKN----GKLDAFIYDAAVL-NYMAGKDEGCKLVT 758 (1258)
T ss_pred CCCcccccCCCCchhhh--HHhccHHHHHHHHHhccCchHHHHHHHhc----ccchhHHHHHHHH-HHhhccCCCceEEE
Confidence 45688888776543322 13455556566666667889999999876 4799999997441 23444555555554
Q ss_pred Ec
Q 029948 143 LW 144 (185)
Q Consensus 143 ~~ 144 (185)
+-
T Consensus 759 IG 760 (1258)
T KOG1053|consen 759 IG 760 (1258)
T ss_pred ec
Confidence 33
No 329
>PRK10566 esterase; Provisional
Probab=29.42 E-value=1.3e+02 Score=23.03 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=25.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+++..+..|.-..+..+++.|+++|+.|...-.
T Consensus 29 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~d~ 62 (249)
T PRK10566 29 TVFFYHGFTSSKLVYSYFAVALAQAGFRVIMPDA 62 (249)
T ss_pred EEEEeCCCCcccchHHHHHHHHHhCCCEEEEecC
Confidence 4444455567767788899999999999887643
No 330
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=29.36 E-value=1.2e+02 Score=21.29 Aligned_cols=34 Identities=21% Similarity=0.187 Sum_probs=28.3
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 12 IVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 12 l~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+|++..+.|=..-...|++.|.++|.+|.++-+.
T Consensus 3 ~~~~~~~~Gkt~~~~~l~~~l~~~~~~v~~~kp~ 36 (134)
T cd03109 3 GFGTGTDIGKTVATAILARALKEKGYRVAPLKPV 36 (134)
T ss_pred EEeCCCCcCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4667777788888999999999999999987433
No 331
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=29.32 E-value=64 Score=27.80 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=25.6
Q ss_pred eEEEEcCCC---CCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 10 HVIVLPYPS---QGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 10 ~il~~~~p~---~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
-+++=|++. -||+.|+.. .+.|++.||++.++..+.
T Consensus 37 y~G~dPT~~sLHlGhlv~l~~-l~~lq~~G~~~~~ligd~ 75 (410)
T PRK13354 37 YLGFDPTAPSLHIGHLVPLMK-LKRFQDAGHRPVILIGGF 75 (410)
T ss_pred EEcccCCCCCcchhhHHHHHH-HHHHHHcCCeEEEEEccc
Confidence 344566643 299999655 568899999998887443
No 332
>PRK08309 short chain dehydrogenase; Provisional
Probab=29.27 E-value=1e+02 Score=23.00 Aligned_cols=19 Identities=32% Similarity=0.588 Sum_probs=16.4
Q ss_pred HHHHHHHHhCCCeEEEEcC
Q 029948 26 MQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~ 44 (185)
..++++|+++|++|++++-
T Consensus 13 g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 13 KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred HHHHHHHHHCcCEEEEEEC
Confidence 4699999999999998753
No 333
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=29.26 E-value=1.6e+02 Score=23.35 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
++..|+|+.+.+.+.. -...+++.|.++|++|..+--++
T Consensus 17 ~~p~vvliHG~~~~~~-~w~~~~~~L~~~g~~vi~~dl~g 55 (273)
T PLN02211 17 QPPHFVLIHGISGGSW-CWYKIRCLMENSGYKVTCIDLKS 55 (273)
T ss_pred CCCeEEEECCCCCCcC-cHHHHHHHHHhCCCEEEEecccC
Confidence 3467888888776544 45777888999999998875443
No 334
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=29.22 E-value=1.3e+02 Score=21.84 Aligned_cols=35 Identities=20% Similarity=0.423 Sum_probs=28.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+.++-+.+.|=..-+..|+++|..+|++|.++-..
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 34556677788888899999999999999988643
No 335
>PRK06196 oxidoreductase; Provisional
Probab=29.20 E-value=1.1e+02 Score=24.65 Aligned_cols=32 Identities=13% Similarity=0.148 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.+.+++++.+ |-+ =..++++|+++|++|.++.
T Consensus 26 ~k~vlITGas-ggI--G~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 26 GKTAIVTGGY-SGL--GLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEe
Confidence 3567777765 433 5788999999999998865
No 336
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=29.10 E-value=1.3e+02 Score=22.93 Aligned_cols=31 Identities=19% Similarity=0.134 Sum_probs=23.0
Q ss_pred CceEEE-eCCcc-chHHHHHHHhCCCcEEEccc
Q 029948 116 QVTCVV-SDGIM-GFGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 116 ~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~~ 146 (185)
++|+|+ .+.-. +.+..+|.++|+|++..--.
T Consensus 50 ~~d~Vv~~ea~Gi~la~~lA~~Lg~p~v~vRK~ 82 (191)
T TIGR01744 50 GITKIVTIEASGIAPAIMTGLKLGVPVVFARKK 82 (191)
T ss_pred CCCEEEEEccccHHHHHHHHHHHCCCEEEEEeC
Confidence 689998 44432 45778999999999986554
No 337
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=29.05 E-value=34 Score=21.72 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=15.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcch
Q 029948 25 MMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
--+|.+.|.++|+.||=.|.....
T Consensus 22 Q~eL~~~L~~~Gi~vTQaTiSRDL 45 (70)
T PF01316_consen 22 QEELVELLEEEGIEVTQATISRDL 45 (70)
T ss_dssp HHHHHHHHHHTT-T--HHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchhHHHHHH
Confidence 457999999999998877654433
No 338
>PRK07454 short chain dehydrogenase; Provisional
Probab=28.94 E-value=1.3e+02 Score=22.86 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+++.++++..+ |. --..++++|+++|++|.++.-
T Consensus 5 ~~k~vlItG~s-g~--iG~~la~~l~~~G~~V~~~~r 38 (241)
T PRK07454 5 SMPRALITGAS-SG--IGKATALAFAKAGWDLALVAR 38 (241)
T ss_pred CCCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 34566666543 43 346789999999999988764
No 339
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=28.91 E-value=1.6e+02 Score=21.37 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+++.-.||.|=-.....+++.|+++|.+|.++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 4566678889999999999999999999999987654
No 340
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=28.86 E-value=1.1e+02 Score=25.74 Aligned_cols=38 Identities=24% Similarity=0.468 Sum_probs=29.8
Q ss_pred CceEEEEc-C-CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLP-Y-PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~-~-p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++++..+. . +|.|=-.-...||..|+.+|++|-++=.+
T Consensus 103 ~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 142 (387)
T TIGR03453 103 HLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLD 142 (387)
T ss_pred CceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34555443 3 78899999999999999999999888444
No 341
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.83 E-value=1.2e+02 Score=23.98 Aligned_cols=34 Identities=18% Similarity=0.155 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.|+++++..+.++= -=..++++|+++|++|.+..
T Consensus 7 ~k~~lVTGas~~~G-IG~aiA~~la~~Ga~V~~~~ 40 (271)
T PRK06505 7 GKRGLIMGVANDHS-IAWGIAKQLAAQGAELAFTY 40 (271)
T ss_pred CCEEEEeCCCCCCc-HHHHHHHHHHhCCCEEEEec
Confidence 47888888774111 35789999999999998864
No 342
>PRK10125 putative glycosyl transferase; Provisional
Probab=28.71 E-value=1.1e+02 Score=25.99 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=28.0
Q ss_pred ceEEEE--cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVL--PYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~--~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|||+.+ .....|-=.-++.|++.|.++||+|.++....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~ 40 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYG 40 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecC
Confidence 456633 33444666789999999999999999986543
No 343
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=28.62 E-value=1.3e+02 Score=22.86 Aligned_cols=32 Identities=3% Similarity=-0.087 Sum_probs=19.9
Q ss_pred CCceEEEeC----CccchHHHHHHHh-----CCCcEEEccc
Q 029948 115 PQVTCVVSD----GIMGFGAKAARIL-----GIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI~D----~~~~~~~~vA~~l-----giP~i~~~~~ 146 (185)
.+||+||.| ...+.+.++.+++ +++++.++..
T Consensus 46 ~~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~~iivlt~~ 86 (207)
T PRK15411 46 LRPSVVFINEDCFIHDASNSQRIKQIINQHPNTLFIVFMAI 86 (207)
T ss_pred cCCCEEEEeCcccCCCCChHHHHHHHHHHCCCCeEEEEECC
Confidence 368999999 4344444555433 4667777654
No 344
>PRK14974 cell division protein FtsY; Provisional
Probab=28.60 E-value=1.7e+02 Score=24.55 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=33.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
..|+|+-.+|.|=..-...|+..|.++|++|.+++.+.+
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 456677778889999999999999999999999887643
No 345
>PRK04148 hypothetical protein; Provisional
Probab=28.60 E-value=64 Score=23.26 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
..+++.+-.+ .| ..+|..|++.||+|+.+=
T Consensus 17 ~~kileIG~G-fG-----~~vA~~L~~~G~~ViaID 46 (134)
T PRK04148 17 NKKIVELGIG-FY-----FKVAKKLKESGFDVIVID 46 (134)
T ss_pred CCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEE
Confidence 3567766655 33 346889999999999883
No 346
>PRK10037 cell division protein; Provisional
Probab=28.57 E-value=1.1e+02 Score=24.02 Aligned_cols=35 Identities=17% Similarity=0.066 Sum_probs=27.7
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 11 VIVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 11 il~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|.+... +|.|=-.-...||..|+++|++|-++=.+
T Consensus 4 iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D 39 (250)
T PRK10037 4 LGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDAC 39 (250)
T ss_pred EEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 334444 77788899999999999999999998333
No 347
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=28.57 E-value=1.5e+02 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.088 Sum_probs=19.9
Q ss_pred CceEEEeCCccchH--HHHHHHhCCCcEEEccc
Q 029948 116 QVTCVVSDGIMGFG--AKAARILGIPDVQLWTA 146 (185)
Q Consensus 116 ~~D~vI~D~~~~~~--~~vA~~lgiP~i~~~~~ 146 (185)
++|+||........ ...+.+.|||++.+...
T Consensus 55 ~~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 55 RVDGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred CcCEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 67877765544333 35567778888877554
No 348
>PRK08265 short chain dehydrogenase; Provisional
Probab=28.51 E-value=1.2e+02 Score=23.64 Aligned_cols=32 Identities=19% Similarity=0.164 Sum_probs=24.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.++++..+.| --..++++|+++|++|.++.-
T Consensus 7 k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATL---IGAAVARALVAAGARVAIVDI 38 (261)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCEEEEEeC
Confidence 56677766532 557899999999999988753
No 349
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=28.50 E-value=1.1e+02 Score=27.21 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=20.5
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~ 143 (185)
.+||+||.+. ....+|+++|||++.+
T Consensus 361 ~~PdliiG~~---~er~~a~~lgiP~~~i 386 (519)
T PRK02910 361 AAPELVLGTQ---MERHSAKRLGIPCAVI 386 (519)
T ss_pred cCCCEEEEcc---hHHHHHHHcCCCEEEe
Confidence 3689999765 4567899999999755
No 350
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=28.38 E-value=72 Score=27.96 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=20.8
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQ 142 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~ 142 (185)
.++|++|.. ++...+|+++|||++-
T Consensus 392 ~~pDliig~---s~~~~~a~k~giP~~~ 416 (475)
T PRK14478 392 AKADIMLSG---GRSQFIALKAGMPWLD 416 (475)
T ss_pred cCCCEEEec---CchhhhhhhcCCCEEE
Confidence 368999986 5677899999999983
No 351
>PRK09213 pur operon repressor; Provisional
Probab=28.30 E-value=1.3e+02 Score=24.43 Aligned_cols=31 Identities=16% Similarity=0.185 Sum_probs=22.9
Q ss_pred CCceEEE-eCCcc-chHHHHHHHhCCCcEEEcc
Q 029948 115 PQVTCVV-SDGIM-GFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 115 ~~~D~vI-~D~~~-~~~~~vA~~lgiP~i~~~~ 145 (185)
.++|+|+ .+.-. +.+..+|..+|+|++..=-
T Consensus 129 ~~iD~Vvtvet~GIplA~~vA~~L~vp~vivRK 161 (271)
T PRK09213 129 KKIDAVMTVETKGIPLAYAVANYLNVPFVIVRR 161 (271)
T ss_pred cCCCEEEEEccccHHHHHHHHHHHCCCEEEEEE
Confidence 3689988 45433 6678899999999887543
No 352
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=28.30 E-value=61 Score=21.37 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 25 MMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+++++++|.+.|++ ++++.+..+.+
T Consensus 2 ~~~~a~~l~~lG~~--i~AT~gTa~~L 26 (95)
T PF02142_consen 2 IVPLAKRLAELGFE--IYATEGTAKFL 26 (95)
T ss_dssp HHHHHHHHHHTTSE--EEEEHHHHHHH
T ss_pred HHHHHHHHHHCCCE--EEEChHHHHHH
Confidence 57899999999954 56666666655
No 353
>PRK10490 sensor protein KdpD; Provisional
Probab=28.07 E-value=1e+02 Score=29.33 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=34.5
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+++.||.+-..||.|=..-|+.=|++|.++|++|.+=-
T Consensus 22 ~g~l~i~~g~~~gvgkt~~ml~~a~~~~~~g~dvv~g~ 59 (895)
T PRK10490 22 RGKLKIFFGACAGVGKTYAMLQEAQRLRAQGLDVLVGV 59 (895)
T ss_pred CCcEEEEeecCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57889999999999999999999999999999997643
No 354
>PRK06924 short chain dehydrogenase; Provisional
Probab=28.03 E-value=1.3e+02 Score=23.09 Aligned_cols=32 Identities=22% Similarity=0.219 Sum_probs=21.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.+++++.+ | .--..++++|+++|++|.++.-
T Consensus 2 k~vlItGas-g--giG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 2 RYVIITGTS-Q--GLGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred cEEEEecCC-c--hHHHHHHHHHHhcCCEEEEEeC
Confidence 344555433 3 2346789999999999987753
No 355
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=27.99 E-value=89 Score=27.02 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=19.1
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDV 141 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i 141 (185)
.++|++|... +...+|+++|||++
T Consensus 372 ~~~dliig~s---~~k~~A~~l~ip~i 395 (432)
T TIGR01285 372 AGADLLITNS---HGRALAQRLALPLV 395 (432)
T ss_pred cCCCEEEECc---chHHHHHHcCCCEE
Confidence 3688888665 45789999999997
No 356
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.92 E-value=68 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|+|.++-.+..| ..++..|++.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 356666665544 46899999999999988753
No 357
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=27.92 E-value=71 Score=26.06 Aligned_cols=33 Identities=21% Similarity=0.161 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++||+++-.++.|= -+|..|++.|++||++.-.
T Consensus 2 ~m~I~IiGaGaiG~-----~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGS-----LWACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHH-----HHHHHHHhCCCCeEEEEec
Confidence 57889888888764 3677788999999999754
No 358
>PLN02327 CTP synthase
Probab=27.92 E-value=1.2e+02 Score=27.44 Aligned_cols=40 Identities=15% Similarity=0.183 Sum_probs=32.0
Q ss_pred eEEEEcCCCCCCh---HHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 10 HVIVLPYPSQGHI---TPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 10 ~il~~~~p~~GH~---~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
|..|++++-.|=+ .-...|++.|.+||++||.+-.+.+..
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYlN 44 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKACGLRVTSIKIDPYLN 44 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHHCCCceeeeecccccc
Confidence 6677777766444 788899999999999999998777643
No 359
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=27.78 E-value=1.4e+02 Score=24.16 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=30.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhC-C-CeEEEEcCCcc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSK-G-FHVTFVNTEFN 47 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~r-G-h~Vt~it~~~~ 47 (185)
-++|+-..|.|=..-...|+..++.+ | +.|.+++.+.+
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 45555556779999999999999987 6 99999998765
No 360
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=27.63 E-value=1.3e+02 Score=23.43 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=23.4
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.+++++.+.| -=..+++.|+++|++|.++.
T Consensus 6 k~vlItGas~g---IG~~ia~~l~~~G~~V~~~~ 36 (262)
T TIGR03325 6 EVVLVTGGASG---LGRAIVDRFVAEGARVAVLD 36 (262)
T ss_pred cEEEEECCCCh---HHHHHHHHHHHCCCEEEEEe
Confidence 56677766543 34788999999999998764
No 361
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=27.56 E-value=1.4e+02 Score=24.12 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=28.2
Q ss_pred EEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 11 VIVLPYPSQG---HITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 11 il~~~~p~~G---H~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
..|++.+-.| -=.-...+++.|.+||++||.+-.+.+.
T Consensus 2 yi~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYl 42 (255)
T cd03113 2 YIFVTGGVVSSLGKGITAASLGRLLKARGLKVTAQKLDPYL 42 (255)
T ss_pred EEEEeCCcccCcchHHHHHHHHHHHHHCCCeEEEEeecccc
Confidence 3455555443 3377788999999999999999777664
No 362
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=27.54 E-value=1.7e+02 Score=22.64 Aligned_cols=31 Identities=23% Similarity=0.200 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
++|+++-..| .--..+++.|.++||+|+.++
T Consensus 18 ~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 18 KTVFVAGATG----RTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CeEEEECCCc----HHHHHHHHHHHhCCCEEEEEe
Confidence 4555544322 334678889999999998765
No 363
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=27.51 E-value=68 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
++|+++-..+. -..|+++|.++||+|+..+....
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~~ 34 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTSE 34 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccCC
Confidence 35666554443 46899999999999988765544
No 364
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=27.50 E-value=1.2e+02 Score=23.45 Aligned_cols=34 Identities=12% Similarity=0.074 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+.+++++.+ |.+ -..+++.|+++|++|.++...
T Consensus 15 ~k~vlItGas-~gI--G~~ia~~l~~~G~~v~~~~~~ 48 (258)
T PRK06935 15 GKVAIVTGGN-TGL--GQGYAVALAKAGADIIITTHG 48 (258)
T ss_pred CCEEEEeCCC-chH--HHHHHHHHHHCCCEEEEEeCC
Confidence 4666777665 444 378999999999999888654
No 365
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=27.49 E-value=1.3e+02 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=24.9
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+|.|=-.-...||..|+++|++|-++=.+
T Consensus 10 GGvGKTt~a~~LA~~la~~g~~VlliD~D 38 (251)
T TIGR01969 10 GGTGKTTITANLGVALAKLGKKVLALDAD 38 (251)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 67788888999999999999999888433
No 366
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.49 E-value=1.1e+02 Score=26.11 Aligned_cols=32 Identities=28% Similarity=0.501 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+++++ |.|. .- +.+|+.|+++|++|+++...
T Consensus 6 k~v~ii---G~g~-~G-~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 6 KKVLVV---GAGV-SG-LALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CEEEEE---CCCH-HH-HHHHHHHHHCCCEEEEEeCC
Confidence 355555 2344 33 49999999999999998654
No 367
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=27.48 E-value=1.4e+02 Score=19.04 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=26.2
Q ss_pred eEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQ--GHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~--GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+++++|.... .+..-...++..|.+.|..|.+-.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~ 38 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDD 38 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEEC
Confidence 6778886643 456678899999999999998753
No 368
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.46 E-value=72 Score=22.61 Aligned_cols=19 Identities=32% Similarity=0.573 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCeEEEEc
Q 029948 25 MMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it 43 (185)
++..|++|++||.+|+..-
T Consensus 25 ~~~VA~~L~e~g~dv~atD 43 (129)
T COG1255 25 FLDVAKRLAERGFDVLATD 43 (129)
T ss_pred HHHHHHHHHHcCCcEEEEe
Confidence 6889999999998887753
No 369
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=27.46 E-value=69 Score=25.76 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=25.3
Q ss_pred EEEEcCC-CC--CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 11 VIVLPYP-SQ--GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 11 il~~~~p-~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.++=|++ .. ||+.|+. ..+.|.+.||++.++..+.
T Consensus 5 ~G~~PTg~~lHLG~~~~~~-~~~~lq~~g~~~~ilI~D~ 42 (269)
T cd00805 5 IGFDPTAPSLHLGHLVPLM-KLRDFQQAGHEVIVLIGDA 42 (269)
T ss_pred EeeCCCCCcccHHHHHHHH-HHHHHHHCCCeEEEEECCC
Confidence 3455554 22 9999976 6788888899998887654
No 370
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=27.44 E-value=1.4e+02 Score=25.39 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.8
Q ss_pred ceEE-EEcC-CCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVI-VLPY-PSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il-~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+++. +... +|.|=-.....||..|+.+|++|-++=
T Consensus 106 ~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 106 PVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred ceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 4454 4444 888999999999999999999998874
No 371
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=27.40 E-value=15 Score=21.26 Aligned_cols=10 Identities=40% Similarity=1.318 Sum_probs=8.0
Q ss_pred CCCCCChHHH
Q 029948 16 YPSQGHITPM 25 (185)
Q Consensus 16 ~p~~GH~~P~ 25 (185)
+||-||+.|.
T Consensus 35 ~PGn~hlQP~ 44 (45)
T PF08384_consen 35 FPGNGHLQPL 44 (45)
T ss_pred cCCCcccCCC
Confidence 5888999874
No 372
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=27.38 E-value=53 Score=27.46 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=25.4
Q ss_pred EcCCCC-CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 14 LPYPSQ-GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 14 ~~~p~~-GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+|+|.. |.-.=+..++++|+++ |+||+++-..
T Consensus 8 ~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~ 40 (397)
T TIGR03087 8 IPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVD 40 (397)
T ss_pred CCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCC
Confidence 455544 8888899999999776 8999998653
No 373
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=27.36 E-value=1.6e+02 Score=23.05 Aligned_cols=41 Identities=17% Similarity=0.345 Sum_probs=33.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchhhh
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~~~ 51 (185)
+++...|+.|--.-++.++..++.+ |+.|.+++.+-..+.+
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l 63 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEEL 63 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHH
Confidence 4466678889999999999999998 6999999998766554
No 374
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=27.30 E-value=84 Score=27.10 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=20.8
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~ 143 (185)
.++|++|... -...+|+++|||.+-+
T Consensus 354 ~~pDllig~s---~~~~~A~k~gIP~vr~ 379 (422)
T TIGR02015 354 FEPDLAIGTT---PLVQFAKEHGIPALYF 379 (422)
T ss_pred CCCCEEEcCC---cchHHHHHcCCCEEEe
Confidence 3799999773 4567899999999863
No 375
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=27.28 E-value=88 Score=24.72 Aligned_cols=26 Identities=8% Similarity=0.267 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 22 ITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 22 ~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+-+.+.+.+.|.++|+.|-++|....
T Consensus 122 ip~al~l~~~l~~~G~~Vf~lTGR~e 147 (229)
T TIGR01675 122 LPEGLKLYQKIIELGIKIFLLSGRWE 147 (229)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCCh
Confidence 45789999999999999999998764
No 376
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=27.19 E-value=1.7e+02 Score=22.63 Aligned_cols=46 Identities=24% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcc
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~ 145 (185)
.++++++.+.+..-.-..-+||+|--.-.+...|+++|||+..+..
T Consensus 12 n~~al~~~~~~~~l~~~i~~visn~~~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 12 NFRAIHDACLDGRVNGDVVVVVTNKPGCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred hHHHHHHHHHcCCCCeEEEEEEEeCCCChHHHHHHHhCCCEEEecc
Confidence 4555666554321001345777885444578899999999987544
No 377
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=27.18 E-value=1e+02 Score=23.53 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+++++-.+..| ...++.|.++|++||++....
T Consensus 11 k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 11 KRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCCC
Confidence 467776555433 567899999999999997543
No 378
>PRK12474 hypothetical protein; Provisional
Probab=27.16 E-value=1.4e+02 Score=26.26 Aligned_cols=41 Identities=7% Similarity=-0.017 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch------HHHHHHHhCCCcEEE
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF------GAKAARILGIPDVQL 143 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~------~~~vA~~lgiP~i~~ 143 (185)
+.++++++.+.++ ++| +||.+.-... ...+|+++|+|++..
T Consensus 189 ~~i~~~~~~L~~A---~rP-vil~G~g~~~~~a~~~l~~lae~~g~PV~~t 235 (518)
T PRK12474 189 ETVERIAALLRNG---KKS-ALLLRGSALRGAPLEAAGRIQAKTGVRLYCD 235 (518)
T ss_pred HHHHHHHHHHHcC---CCc-EEEECCccchhhHHHHHHHHHHHHCCCEEEe
Confidence 3466666666654 467 6666554321 246899999999853
No 379
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=27.13 E-value=1.3e+02 Score=22.99 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=22.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.++++.. .|.+- ..+++.|.++|++|.++...
T Consensus 3 ~vlItGa-~g~lG--~~l~~~l~~~g~~v~~~~r~ 34 (255)
T TIGR01963 3 TALVTGA-ASGIG--LAIALALAAAGANVVVNDLG 34 (255)
T ss_pred EEEEcCC-cchHH--HHHHHHHHHCCCEEEEEeCC
Confidence 3455543 36663 68899999999999887654
No 380
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=27.07 E-value=1.7e+02 Score=22.27 Aligned_cols=32 Identities=19% Similarity=0.056 Sum_probs=23.7
Q ss_pred CCceEEE-eCC-ccchHHHHHHHhCCCcEEEccc
Q 029948 115 PQVTCVV-SDG-IMGFGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI-~D~-~~~~~~~vA~~lgiP~i~~~~~ 146 (185)
.++|+|+ .+. -.+.+..+|+++|+|+..+...
T Consensus 84 ~~~D~Ivgi~~gG~~~A~~lA~~L~~~~~~~~~~ 117 (200)
T PRK02277 84 EEVDVVVGIAKSGVPLATLVADELGKDLAIYHPK 117 (200)
T ss_pred CCCCEEEeeccCCHHHHHHHHHHhCCCcEEEecc
Confidence 4689998 343 3466789999999998776543
No 381
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=27.03 E-value=1.2e+02 Score=25.45 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=26.5
Q ss_pred ceEEEEcC-CCCCChHHHHHHHHHHHhCCC---eEEEE
Q 029948 9 QHVIVLPY-PSQGHITPMMQLAKLLHSKGF---HVTFV 42 (185)
Q Consensus 9 ~~il~~~~-p~~GH~~P~l~La~~La~rGh---~Vt~i 42 (185)
+||++++. -|.||...--+|.++|.++|. +|.++
T Consensus 6 ~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~ 43 (391)
T PRK13608 6 KKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH 43 (391)
T ss_pred ceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 57887765 566999999999999998864 45544
No 382
>PRK10565 putative carbohydrate kinase; Provisional
Probab=26.99 E-value=85 Score=27.83 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=27.5
Q ss_pred ceEEEEcCCCC--CChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQ--GHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~--GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+|++++.+|- |+= +.+||.|.++|++|+++..
T Consensus 61 ~~v~vl~G~GNNGGDG---~v~AR~L~~~G~~V~v~~~ 95 (508)
T PRK10565 61 RHWLVLCGHGNNGGDG---YVVARLAQAAGIDVTLLAQ 95 (508)
T ss_pred CeEEEEEcCCCchHHH---HHHHHHHHHCCCceEEEEE
Confidence 47999999886 554 7899999999999999864
No 383
>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long. This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.
Probab=26.95 E-value=3.4e+02 Score=22.67 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEe-CCccc--hHHHHHHHhCCCcEEEcccch
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVS-DGIMG--FGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~-D~~~~--~~~~vA~~lgiP~i~~~~~~~ 148 (185)
+..++..+++..-.. ...|+++. |...- .....|+.++||++..+..+.
T Consensus 56 ~~A~~~al~Ka~l~~--~dId~~~aGDLlnQ~i~s~f~ar~l~iPf~GlygACS 107 (329)
T PF07451_consen 56 KEAVELALKKAGLKK--EDIDYLFAGDLLNQIISSSFAARDLGIPFLGLYGACS 107 (329)
T ss_dssp HHHHHHHHHHTT--G--GG-SEEEEEETTCCCCHHHHHHHHHT--EEEB--CCC
T ss_pred HHHHHHHHHHcCCCH--HHCeEEEehhhhhhhHHHHHHHHhcCCCccchhhHHH
Confidence 455665665532211 36899994 77653 356789999999997665543
No 384
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=26.93 E-value=1.2e+02 Score=26.01 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcc
Q 029948 101 FLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWT 145 (185)
Q Consensus 101 ~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~ 145 (185)
..++.+.+.+ .++|++|.+. ....+|+++|+|++.+..
T Consensus 360 ~~el~~~i~~----~~pdliig~~---~~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 360 LWDLESLAKE----EPVDLLIGNS---HGRYLARDLGIPLVRVGF 397 (428)
T ss_pred HHHHHHHhhc----cCCCEEEECc---hhHHHHHhcCCCEEEecC
No 385
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=26.92 E-value=1.6e+02 Score=20.08 Aligned_cols=28 Identities=29% Similarity=0.158 Sum_probs=18.9
Q ss_pred CCceEEEeCCccc---hHHHHHHHhCCCcEE
Q 029948 115 PQVTCVVSDGIMG---FGAKAARILGIPDVQ 142 (185)
Q Consensus 115 ~~~D~vI~D~~~~---~~~~vA~~lgiP~i~ 142 (185)
.++|++|+.+=.+ ...|..++.|||++.
T Consensus 61 ~~idlvvvGPE~pL~~Gl~D~l~~~gi~vfG 91 (100)
T PF02844_consen 61 NKIDLVVVGPEAPLVAGLADALRAAGIPVFG 91 (100)
T ss_dssp TTESEEEESSHHHHHTTHHHHHHHTT-CEES
T ss_pred cCCCEEEECChHHHHHHHHHHHHHCCCcEEC
Confidence 4799999876443 346777788888753
No 386
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=26.91 E-value=1.4e+02 Score=23.39 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=29.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.|.++.=+|.|=-.-...||..|+++|++|-++=
T Consensus 3 ~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD 36 (270)
T cd02040 3 QIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG 36 (270)
T ss_pred EEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 4666655788999999999999999999999984
No 387
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=26.73 E-value=1.6e+02 Score=22.55 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=23.0
Q ss_pred CCceEEEeCCccc----hHHHHHHHhCCCcEEEccc
Q 029948 115 PQVTCVVSDGIMG----FGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI~D~~~~----~~~~vA~~lgiP~i~~~~~ 146 (185)
.++|.||..+..+ -...-+.+-|||++.+...
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 4799999765443 2345677779999998766
No 388
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=26.66 E-value=1.4e+02 Score=25.64 Aligned_cols=37 Identities=30% Similarity=0.453 Sum_probs=29.5
Q ss_pred ceEE-EEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVI-VLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il-~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+++. +... +|.|=-.....||..|+.+|++|-++=.+
T Consensus 121 ~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlD 159 (405)
T PRK13869 121 LQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLD 159 (405)
T ss_pred ceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCC
Confidence 4544 4443 88899999999999999999999888433
No 389
>PRK12747 short chain dehydrogenase; Provisional
Probab=26.61 E-value=1.4e+02 Score=22.96 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=24.1
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.++++..+.| --..++++|+++|++|.+..
T Consensus 5 k~~lItGas~g---IG~~ia~~l~~~G~~v~~~~ 35 (252)
T PRK12747 5 KVALVTGASRG---IGRAIAKRLANDGALVAIHY 35 (252)
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCCeEEEEc
Confidence 56777776653 46789999999999998864
No 390
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=26.61 E-value=1.3e+02 Score=21.28 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHhCCCeE-EEEc
Q 029948 22 ITPMMQLAKLLHSKGFHV-TFVN 43 (185)
Q Consensus 22 ~~P~l~La~~La~rGh~V-t~it 43 (185)
..--+.+|+.+.++||+| +++-
T Consensus 17 ~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 17 ASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred HHHHHHHHHHHHhCCCCeeEEEE
Confidence 367788999999999994 6654
No 391
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=26.58 E-value=1.2e+02 Score=23.38 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=29.0
Q ss_pred EEEEc-CCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 11 VIVLP-YPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 11 il~~~-~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
|.+.. -+|.|=-.-...||..|+++|.+|-++=.+.
T Consensus 4 I~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~ 40 (246)
T TIGR03371 4 IAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDP 40 (246)
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 33433 4788999999999999999999999986554
No 392
>PRK06180 short chain dehydrogenase; Provisional
Probab=26.53 E-value=1.4e+02 Score=23.43 Aligned_cols=33 Identities=15% Similarity=-0.027 Sum_probs=23.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+.+++++.+ |. --..+++.|+++|++|.++.-.
T Consensus 5 ~~vlVtGas-gg--iG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVS-SG--FGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCC-Ch--HHHHHHHHHHhCcCEEEEEeCC
Confidence 345555554 53 3578899999999999887643
No 393
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=26.52 E-value=2.5e+02 Score=20.25 Aligned_cols=40 Identities=5% Similarity=0.080 Sum_probs=28.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhC--CCeEEEEcCCcchhhh
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSK--GFHVTFVNTEFNHNRF 51 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~r--Gh~Vt~it~~~~~~~~ 51 (185)
+++|++.. .-++-.-++++++.|.+. |+++ +.+.+..+.+
T Consensus 4 ~~~v~lsv--~d~dK~~l~~~a~~l~~ll~Gf~l--~AT~gTa~~L 45 (142)
T PRK05234 4 RKRIALIA--HDHKKDDLVAWVKAHKDLLEQHEL--YATGTTGGLI 45 (142)
T ss_pred CcEEEEEE--eccchHHHHHHHHHHHHHhcCCEE--EEeChHHHHH
Confidence 44555544 446678899999999999 9984 4666666655
No 394
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=26.34 E-value=72 Score=29.96 Aligned_cols=35 Identities=20% Similarity=0.073 Sum_probs=28.9
Q ss_pred CCceEEEeCCccch--HHHHHHHhCCCcEEEcccchH
Q 029948 115 PQVTCVVSDGIMGF--GAKAARILGIPDVQLWTASAC 149 (185)
Q Consensus 115 ~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~~~~ 149 (185)
.-+|++|+|..+.. ...+|+++|.+.|...+-...
T Consensus 301 GavD~~VvD~QCi~p~L~eiA~~ygt~lItTs~k~~~ 337 (781)
T PRK00941 301 GIPDVIVVDEQCVRTDILEEAKKLGIPVIATNDKICL 337 (781)
T ss_pred CCCcEEEEecccCcccHHHHHHHhCCCEEEecccccc
Confidence 36899999998844 578999999999998876543
No 395
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=26.26 E-value=1.7e+02 Score=24.38 Aligned_cols=49 Identities=6% Similarity=0.127 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccchH---HHHHHHhCCCcEEEcccchHHHH
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGFG---AKAARILGIPDVQLWTASACGFL 152 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~---~~vA~~lgiP~i~~~~~~~~~~~ 152 (185)
+.+++...++.+ +.|.|++=+..+.. ..+.+++++|++.|..++-+++-
T Consensus 229 eAlre~~~D~~E-----GAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaMi 280 (323)
T PRK09283 229 EALREVALDIEE-----GADMVMVKPALPYLDIIRRVKDEFNLPVAAYQVSGEYAMI 280 (323)
T ss_pred HHHHHHHhhHHh-----CCCEEEEcCCchHHHHHHHHHhcCCCCEEEEEccHHHHHH
Confidence 345555555543 67999988877653 56778899999999999987643
No 396
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=26.09 E-value=1e+02 Score=19.53 Aligned_cols=33 Identities=21% Similarity=0.160 Sum_probs=19.5
Q ss_pred CCceEEEeCCccchHHHHH--HHhCCCcEEEcccc
Q 029948 115 PQVTCVVSDGIMGFGAKAA--RILGIPDVQLWTAS 147 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA--~~lgiP~i~~~~~~ 147 (185)
.++|++++|.+..-...|+ ++.|.-+|++...+
T Consensus 25 ~~~~v~~iD~~~~~~~~I~~L~~~G~~vicY~s~G 59 (74)
T PF03537_consen 25 PDVDVVVIDLFDFSKEEIARLKAQGKKVICYFSIG 59 (74)
T ss_dssp SS-SEEEE-SBS--HHHHHHHHHTT-EEEEEEESS
T ss_pred CCCCEEEECCccCCHHHHHHHHHCCCEEEEEEeCc
Confidence 3789999999875544443 57787777766554
No 397
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=26.07 E-value=2e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=24.5
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
|..+.|=..-...|++.|.++|++|..+-+
T Consensus 7 T~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 7 TSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred CCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 334457788899999999999999998853
No 398
>PRK05973 replicative DNA helicase; Provisional
Probab=26.06 E-value=1.5e+02 Score=23.54 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=34.6
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
=+++..-||.|=-.-.++++...+.+|..|.+++.+...+.+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i 107 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDV 107 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH
Confidence 345566689999999999999999999999999988765544
No 399
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=26.06 E-value=1.1e+02 Score=25.66 Aligned_cols=32 Identities=9% Similarity=-0.050 Sum_probs=18.9
Q ss_pred CCceEEEeCCccchHHHHH--HHhCCCcEEEccc
Q 029948 115 PQVTCVVSDGIMGFGAKAA--RILGIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA--~~lgiP~i~~~~~ 146 (185)
.+||+||.....+....+. ..+++|.+.+.+-
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATVMTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEEeCC
Confidence 4799999865443222222 3458998765443
No 400
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=26.05 E-value=1.8e+02 Score=24.26 Aligned_cols=42 Identities=17% Similarity=0.198 Sum_probs=35.6
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
+...|.+.-.||.|=-.-.-.|++.|.++|++|.+++.+...
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 345677888899999999999999999999999999876543
No 401
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=26.00 E-value=1.6e+02 Score=24.57 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=24.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+++|++. ++.|.+ =..|++.|.++||+|+.+.-
T Consensus 20 ~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 20 EKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 45677765 333443 35789999999999998863
No 402
>CHL00175 minD septum-site determining protein; Validated
Probab=25.99 E-value=1.7e+02 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.414 Sum_probs=28.9
Q ss_pred ceEEEEcC--CCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPY--PSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~--p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.++..+.. ||.|=-.-...||..|+++|.+|-++=.+
T Consensus 15 ~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D 53 (281)
T CHL00175 15 SRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDAD 53 (281)
T ss_pred ceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 35554444 77788899999999999999998887433
No 403
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=25.98 E-value=82 Score=25.82 Aligned_cols=33 Identities=33% Similarity=0.279 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.++|.++-.+..| ..+++.|+++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 4688888666655 46889999999999998764
No 404
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=25.92 E-value=1.5e+02 Score=21.53 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=62.1
Q ss_pred EcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHH
Q 029948 14 LPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSI 93 (185)
Q Consensus 14 ~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 93 (185)
-.-+|.|=-.-...||+.|+++|++|.++-.+...... .... .. ...+..+.... .....++.......
T Consensus 5 ~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~-~~~~--------~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 73 (195)
T PF01656_consen 5 SGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNL-SILF--------GV-YDILREGLENA-NAILKNFESQDIYQ 73 (195)
T ss_dssp ESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHH-HHHT--------TC-HHHHTTSSHGH-HCHHESCCHHHHHH
T ss_pred cCCCCccHHHHHHHHHhccccccccccccccCcccccH-HHHh--------cc-hhhccccceeh-hhhhhccchhhhhh
Confidence 34477788899999999999999999999654432211 1100 00 00000000000 00000000000000
Q ss_pred H--HhCcHHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEcccchHHHH
Q 029948 94 R--KTCLAPFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTASACGFL 152 (185)
Q Consensus 94 ~--~~~~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~~~~~~~ 152 (185)
. ......++++++.+.+ ..+|.||+|.-......+...+...-..+.+......+
T Consensus 74 ~~~~~~~~~l~~~l~~l~~----~~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~ 130 (195)
T PF01656_consen 74 GEEYLDPELLREILESLIK----SDYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSS 130 (195)
T ss_dssp HCHCHHHHHHHHHHHHHHH----TTSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHH
T ss_pred hhhhhHHHHHHHHHHHhhh----ccccceeecccccccHHHHHHHHhCceeeeecCCcHHH
Confidence 0 0112345666666543 24999999987766555666666666666665544333
No 405
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.92 E-value=1.8e+02 Score=23.77 Aligned_cols=44 Identities=20% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~ 144 (185)
..++++++...+..-....-+||+|- +.+..+|+++|||++.+.
T Consensus 101 ~nl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~ 144 (286)
T PRK13011 101 HCLNDLLYRWRIGELPMDIVGVVSNH--PDLEPLAAWHGIPFHHFP 144 (286)
T ss_pred ccHHHHHHHHHcCCCCcEEEEEEECC--ccHHHHHHHhCCCEEEeC
Confidence 45777887664321002455777874 346667999999998864
No 406
>PRK12367 short chain dehydrogenase; Provisional
Probab=25.89 E-value=1.2e+02 Score=23.71 Aligned_cols=37 Identities=19% Similarity=0.074 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 6 VTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 6 ~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+-+.+.+++++.+.| --..++++|+++|++|.++...
T Consensus 11 ~l~~k~~lITGas~g---IG~ala~~l~~~G~~Vi~~~r~ 47 (245)
T PRK12367 11 TWQGKRIGITGASGA---LGKALTKAFRAKGAKVIGLTHS 47 (245)
T ss_pred hhCCCEEEEEcCCcH---HHHHHHHHHHHCCCEEEEEECC
Confidence 334467777776643 3378899999999999887543
No 407
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.82 E-value=1.3e+02 Score=24.05 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=23.8
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
|++++ ..+.++++..++|-+- -+|++++++.|++|.-.
T Consensus 1 ~e~~~--~~k~VlItgcs~GGIG--~ala~ef~~~G~~V~At 38 (289)
T KOG1209|consen 1 SELQS--QPKKVLITGCSSGGIG--YALAKEFARNGYLVYAT 38 (289)
T ss_pred CCccc--CCCeEEEeecCCcchh--HHHHHHHHhCCeEEEEE
Confidence 45554 3345555554444332 37899999999998653
No 408
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=25.71 E-value=68 Score=26.32 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHHHHHHHhCCCeEEEEcCC
Q 029948 26 MQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it~~ 45 (185)
..|..+|...||+||+++=.
T Consensus 12 ~~L~~~L~~~gh~v~iltR~ 31 (297)
T COG1090 12 RALTARLRKGGHQVTILTRR 31 (297)
T ss_pred HHHHHHHHhCCCeEEEEEcC
Confidence 46778888999999999843
No 409
>TIGR03274 methan_mark_7 putative methanogenesis marker protein 7. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=25.69 E-value=81 Score=25.74 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=28.7
Q ss_pred eEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHI-TPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~-~P~l~La~~La~rGh~Vt~it 43 (185)
=+++.++|+.=|+ .|..+++..|.+.|.++..+.
T Consensus 72 V~vVamSpgrrHlpkpvCdIt~~LR~~G~~tn~l~ 106 (302)
T TIGR03274 72 IAVVSPSLARHHLPHAACDIAEYLRRYGAKTNMIG 106 (302)
T ss_pred EEEEecCcccccCCCcHHHHHHHHHhcCCccceEE
Confidence 4567889999998 899999999999998765554
No 410
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=25.68 E-value=1.8e+02 Score=22.17 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=31.9
Q ss_pred CceEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 8 KQHVI-VLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 8 ~~~il-~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+.++. +.-.|+.|--.-.++++...+.+|..|.+++++
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34554 556688899999999999999999999999887
No 411
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=25.66 E-value=1.3e+02 Score=24.23 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.+++++.+ |-+ -..|+++|.++||+|.++.
T Consensus 6 k~vlVtG~~-G~I--G~~l~~~L~~~G~~V~~~~ 36 (325)
T PLN02989 6 KVVCVTGAS-GYI--ASWIVKLLLFRGYTINATV 36 (325)
T ss_pred CEEEEECCc-hHH--HHHHHHHHHHCCCEEEEEE
Confidence 344555433 433 5678999999999998764
No 412
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=25.53 E-value=94 Score=24.62 Aligned_cols=38 Identities=29% Similarity=0.434 Sum_probs=28.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCC--CeEEEEcCCcchh
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKG--FHVTFVNTEFNHN 49 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rG--h~Vt~it~~~~~~ 49 (185)
+++++..+. | +.|+.++++++.++| .+|+++......+
T Consensus 109 ~vlliagGt-G-~aPl~~i~~~~~~~~~~~~V~~~~G~~~~~ 148 (252)
T COG0543 109 PVLLIAGGT-G-IAPLYAIAKELKEKGDANKVTLLYGARTAK 148 (252)
T ss_pred cEEEEeccc-C-HhHHHHHHHHHHhcCCCceEEEEEeccChh
Confidence 355555443 4 679999999999999 9999998665443
No 413
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=25.46 E-value=1.2e+02 Score=19.33 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=29.2
Q ss_pred eEEEEcCCCCCChHHH-HHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPYPSQGHITPM-MQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~-l~La~~La~rGh~Vt~it~~ 45 (185)
||++++..|.|.-.-+ ..+=+.+.++|.+++.....
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~ 37 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS 37 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec
Confidence 6889999998888777 88888899999777766544
No 414
>PRK05802 hypothetical protein; Provisional
Probab=25.45 E-value=92 Score=25.73 Aligned_cols=37 Identities=19% Similarity=0.205 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
.+++++..+. | +.|++.+++.|.++|.+|+++-....
T Consensus 173 ~~~llIaGGi-G-IaPl~~l~~~l~~~~~~v~li~g~r~ 209 (320)
T PRK05802 173 GKSLVIARGI-G-QAPGVPVIKKLYSNGNKIIVIIDKGP 209 (320)
T ss_pred CeEEEEEeEE-e-HHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4677766443 3 89999999999999988998865443
No 415
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=25.40 E-value=90 Score=26.95 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
|||.++-.+..| +..+..|++.||+|+++=..
T Consensus 1 MkI~viGtGYVG-----Lv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 1 MKITVIGTGYVG-----LVTGACLAELGHEVVCVDID 32 (414)
T ss_pred CceEEECCchHH-----HHHHHHHHHcCCeEEEEeCC
Confidence 567777776666 45577899999999998543
No 416
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=25.34 E-value=1.9e+02 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCCChHHHH---HHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMM---QLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l---~La~~La~rGh~Vt~it 43 (185)
++|++++....|-.+.++ .|.++-.++||++++=+
T Consensus 3 mkivaVtacp~GiAht~lAAeaL~kAA~~~G~~i~VE~ 40 (114)
T PRK10427 3 AYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVKIET 40 (114)
T ss_pred ceEEEEeeCCCcHHHHHHHHHHHHHHHHHCCCeEEEEe
Confidence 678888887778887776 57777777899999865
No 417
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=25.33 E-value=2.4e+02 Score=19.64 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCcc
Q 029948 25 MMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+.++.+.|.++|+.+.++|....
T Consensus 82 ~~~~L~~l~~~~~~~~i~Sn~~~ 104 (176)
T PF13419_consen 82 VRELLERLKAKGIPLVIVSNGSR 104 (176)
T ss_dssp HHHHHHHHHHTTSEEEEEESSEH
T ss_pred hhhhhhhcccccceeEEeecCCc
Confidence 56788899999999999987754
No 418
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=25.32 E-value=1.6e+02 Score=25.64 Aligned_cols=30 Identities=13% Similarity=0.191 Sum_probs=21.7
Q ss_pred CCceEEEeCCccchH----------HHHHHHhCCCcEEEc
Q 029948 115 PQVTCVVSDGIMGFG----------AKAARILGIPDVQLW 144 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~----------~~vA~~lgiP~i~~~ 144 (185)
.+||++|..+.+..+ ..|.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 75 KEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 479999998866431 236678999998644
No 419
>PRK08177 short chain dehydrogenase; Provisional
Probab=25.30 E-value=1.5e+02 Score=22.34 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
+.+++++.+ | .--..+++.|+++|++|.++.-.
T Consensus 2 k~vlItG~s-g--~iG~~la~~l~~~G~~V~~~~r~ 34 (225)
T PRK08177 2 RTALIIGAS-R--GLGLGLVDRLLERGWQVTATVRG 34 (225)
T ss_pred CEEEEeCCC-c--hHHHHHHHHHHhCCCEEEEEeCC
Confidence 344555544 2 33456899999999999887643
No 420
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=25.27 E-value=1.2e+02 Score=19.85 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHh--CCCeEEEEcCCc
Q 029948 22 ITPMMQLAKLLHS--KGFHVTFVNTEF 46 (185)
Q Consensus 22 ~~P~l~La~~La~--rGh~Vt~it~~~ 46 (185)
+.|++.+.+.+.+ .+.+|+++-...
T Consensus 8 IaP~~s~l~~~~~~~~~~~v~l~~~~r 34 (109)
T PF00175_consen 8 IAPFLSMLRYLLERNDNRKVTLFYGAR 34 (109)
T ss_dssp GHHHHHHHHHHHHHTCTSEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEEEEc
Confidence 7899999999995 468898885433
No 421
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=25.26 E-value=1.6e+02 Score=25.31 Aligned_cols=43 Identities=26% Similarity=0.163 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccch-----HHHHHHHhCCCcEEEcc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGF-----GAKAARILGIPDVQLWT 145 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~-----~~~vA~~lgiP~i~~~~ 145 (185)
..++++.+.+.++ ++| +||++.-... ...+|+++|+|++....
T Consensus 199 ~~i~~~~~~l~~A---krP-vi~~G~g~~~~a~~~l~~lae~~~~PV~tt~~ 246 (432)
T TIGR00173 199 ESLDELWDRLNQA---KRG-VIVAGPLPPAEDAEALAALAEALGWPLLADPL 246 (432)
T ss_pred hhHHHHHHHHhhc---CCc-EEEEcCCCcHHHHHHHHHHHHhCCCeEEEeCC
Confidence 3466666666654 467 6666654321 24689999999996433
No 422
>PRK10867 signal recognition particle protein; Provisional
Probab=25.22 E-value=1.8e+02 Score=25.36 Aligned_cols=41 Identities=22% Similarity=0.282 Sum_probs=33.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhC-CCeEEEEcCCcchh
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSK-GFHVTFVNTEFNHN 49 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~it~~~~~~ 49 (185)
.-|+++-.+|.|=..-...||..|..+ |..|.+++.+.+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 345566667889999999999999999 99999998876543
No 423
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=25.16 E-value=1.6e+02 Score=25.62 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred CCceEEEeCCccchH----------HHHHHHhCCCcEEEc
Q 029948 115 PQVTCVVSDGIMGFG----------AKAARILGIPDVQLW 144 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~----------~~vA~~lgiP~i~~~ 144 (185)
.+||++|..+.+..+ ..|.+++|||.++-.
T Consensus 75 ~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 75 ANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred cCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 479999998866431 236678999998644
No 424
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=25.15 E-value=1.4e+02 Score=24.76 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=18.2
Q ss_pred CCceEEEeCCccchHHHHH--HHhCCCcEEEcc
Q 029948 115 PQVTCVVSDGIMGFGAKAA--RILGIPDVQLWT 145 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA--~~lgiP~i~~~~ 145 (185)
.+||+||.+........+. ..+++|.+...+
T Consensus 103 ~~pD~Vi~~~~~~~~~~~~~~~~~~ip~~~~~t 135 (380)
T PRK13609 103 EKPDIVINTFPIIAVPELKKQTGISIPTYNVLT 135 (380)
T ss_pred hCcCEEEEcChHHHHHHHHHhcCCCCCeEEEeC
Confidence 4799999875443332222 345689875443
No 425
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=25.15 E-value=1e+02 Score=25.59 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=28.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
|+=++.+|.|=.=-...|++.|.++|++|.+++=
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSR 73 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQARGYRPAILSR 73 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhcCCceEEEcC
Confidence 4446778889888889999999999999999864
No 426
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=25.10 E-value=1.3e+02 Score=23.79 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCceEEEe-CC-ccchHHHHHHHhCCCcEEE
Q 029948 115 PQVTCVVS-DG-IMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 115 ~~~D~vI~-D~-~~~~~~~vA~~lgiP~i~~ 143 (185)
.++|+|+. +. -.+.+..+|.++|+|++..
T Consensus 110 ~~~D~Vvtv~~~GI~lA~~lA~~L~~p~vi~ 140 (238)
T PRK08558 110 LRVDVVLTAATDGIPLAVAIASYFGADLVYA 140 (238)
T ss_pred CCCCEEEEECcccHHHHHHHHHHHCcCEEEE
Confidence 36899883 33 3466788999999999874
No 427
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=25.06 E-value=1.6e+02 Score=22.24 Aligned_cols=46 Identities=24% Similarity=0.210 Sum_probs=29.9
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEeCCccc-hHHHHHHHhCCCcEEEcccc
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVSDGIMG-FGAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~D~~~~-~~~~vA~~lgiP~i~~~~~~ 147 (185)
.+.+++++.++.++ ..-++|..-..- =....++++|+|.|.----+
T Consensus 48 tpe~~~W~~e~k~~----gi~v~vvSNn~e~RV~~~~~~l~v~fi~~A~KP 94 (175)
T COG2179 48 TPELRAWLAELKEA----GIKVVVVSNNKESRVARAAEKLGVPFIYRAKKP 94 (175)
T ss_pred CHHHHHHHHHHHhc----CCEEEEEeCCCHHHHHhhhhhcCCceeecccCc
Confidence 57788888888764 355555433222 24568899999998654433
No 428
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=25.05 E-value=97 Score=26.55 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=27.9
Q ss_pred eEEEEcCCCCC---ChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 10 HVIVLPYPSQG---HITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 10 ~il~~~~p~~G---H~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
.+.++|.-|.- -.+|..++++.|.++|.+|.+...+-
T Consensus 310 sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPV 349 (463)
T COG1282 310 SVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPV 349 (463)
T ss_pred eEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeeccc
Confidence 55566554442 24899999999999999999987653
No 429
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=25.05 E-value=1.6e+02 Score=22.69 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+|.|=-.-...||..|+++|.+|-++=.
T Consensus 11 GGvGKTt~a~~lA~~la~~g~~vlliD~ 38 (261)
T TIGR01968 11 GGVGKTTTTANLGTALARLGKKVVLIDA 38 (261)
T ss_pred CCccHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 7778889999999999999999988843
No 430
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=24.99 E-value=1.1e+02 Score=25.11 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 21 HITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 21 H~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+......|..+..+|||+|.++.....
T Consensus 16 ~~~st~~L~~aa~~rG~~v~~~~~~~l 42 (312)
T TIGR01380 16 GKDTTFALMEEAQKRGHELFFYEPGDL 42 (312)
T ss_pred CcChHHHHHHHHHHcCCEEEEEehhhe
Confidence 445678899999999999999987654
No 431
>PHA02857 monoglyceride lipase; Provisional
Probab=24.94 E-value=1.5e+02 Score=23.03 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
..++++.-+..+|..-...+++.|+++|++|..+=
T Consensus 25 ~~~v~llHG~~~~~~~~~~~~~~l~~~g~~via~D 59 (276)
T PHA02857 25 KALVFISHGAGEHSGRYEELAENISSLGILVFSHD 59 (276)
T ss_pred CEEEEEeCCCccccchHHHHHHHHHhCCCEEEEcc
Confidence 35666666667888899999999999999988763
No 432
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=24.88 E-value=1.6e+02 Score=20.75 Aligned_cols=33 Identities=30% Similarity=0.416 Sum_probs=24.8
Q ss_pred cCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 15 PYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 15 ~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+.++.|=-.-.+.||+.|+++|++|-++-....
T Consensus 8 ~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 8 PKGGVGKTTLALNLAAALARKGKKVLLIDFDFF 40 (157)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SS
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCC
Confidence 467778888899999999999999777755443
No 433
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=24.85 E-value=84 Score=30.49 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=25.2
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+..||+++-.+-.| +..|+.|+.+||+||++=.
T Consensus 382 tgKKVaVVGaGPAG-----LsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 382 TNYNILVTGLGPAG-----FSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCeEEEECcCHHH-----HHHHHHHHhCCCeEEEEcc
Confidence 34577777665434 7899999999999999853
No 434
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=24.84 E-value=1.5e+02 Score=22.54 Aligned_cols=32 Identities=16% Similarity=0.084 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.+++++.+.| --..++++|+++|++|.++..
T Consensus 6 k~vlItGas~g---IG~~ia~~l~~~G~~vi~~~r 37 (248)
T TIGR01832 6 KVALVTGANTG---LGQGIAVGLAEAGADIVGAGR 37 (248)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEcC
Confidence 55666666532 367899999999999988764
No 435
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.76 E-value=85 Score=25.22 Aligned_cols=32 Identities=28% Similarity=0.264 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+|.++-.+..| ..+|..|+.+||+|+++...
T Consensus 4 ~kIaViGaG~mG-----~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLG-----SQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHH-----HHHHHHHHhcCCeEEEEeCC
Confidence 368888666666 56888999999999998644
No 436
>PRK07677 short chain dehydrogenase; Provisional
Probab=24.76 E-value=1.5e+02 Score=22.84 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=22.5
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.+++++.+.| --..+++.|+++|++|.++.
T Consensus 2 k~~lItG~s~g---iG~~ia~~l~~~G~~Vi~~~ 32 (252)
T PRK07677 2 KVVIITGGSSG---MGKAMAKRFAEEGANVVITG 32 (252)
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCCEEEEEe
Confidence 34556666544 55778999999999987764
No 437
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=24.65 E-value=93 Score=26.77 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=21.3
Q ss_pred CCceEEEeCCccchHHHHHHHhCCCcEEEc
Q 029948 115 PQVTCVVSDGIMGFGAKAARILGIPDVQLW 144 (185)
Q Consensus 115 ~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~ 144 (185)
.+||++|.... ...+|+++|||+.-+.
T Consensus 368 ~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 368 LKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred hCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 37999998764 5668999999997554
No 438
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=24.61 E-value=81 Score=26.69 Aligned_cols=32 Identities=25% Similarity=0.198 Sum_probs=20.6
Q ss_pred CCceEEEe--CCccchH-HH----------HHHHhCCCcEEEccc
Q 029948 115 PQVTCVVS--DGIMGFG-AK----------AARILGIPDVQLWTA 146 (185)
Q Consensus 115 ~~~D~vI~--D~~~~~~-~~----------vA~~lgiP~i~~~~~ 146 (185)
.+||+||. |..++.. .+ =+...||||++.+..
T Consensus 99 E~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 99 EKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred cCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 48999884 5544321 12 235679999988763
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=24.58 E-value=2.1e+02 Score=20.77 Aligned_cols=41 Identities=17% Similarity=0.144 Sum_probs=33.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+++.-.||.|=-.-.++++...+..|..|.+++.+...+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~ 42 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEEL 42 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHH
Confidence 45666788899999999999999999999999987665544
No 440
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=24.54 E-value=1.1e+02 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=24.3
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++|.++-.+..| ..+|..|+++||+|+.+-..
T Consensus 4 ~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 577777555444 57899999999999988543
No 441
>PF00590 TP_methylase: Tetrapyrrole (Corrin/Porphyrin) Methylases Note this Prosite entry does not include all members of this family.; InterPro: IPR000878 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including cobalamin (vitamin B12), haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. This entry represents several tetrapyrrole methylases, which consist of two non-similar domains. These enzymes catalyse the methylation of their substrates using S-adenosyl-L-methionine as a methyl source. Enzymes in this family include: Uroporphyrinogen III methyltransferase (2.1.1.107 from EC) (SUMT), which catalyses the conversion of uroporphyrinogen III to precorrin-2 at the first branch-point of the tetrapyrrole synthesis pathway, directing the pathway towards cobalamin or sirohaem synthesis []. Precorrin-2 C20-methyltransferase CobI/CbiL (2.1.1.130 from EC), which introduces a methyl group at C-20 on precorrin-2 to produce precorrin-3A during cobalamin biosynthesis. This reaction is key to the conversion of a porphyrin-type tetrapyrrole ring to a corrin ring []. In some species, this enzyme is part of a bifunctional protein. Precorrin-4 C11-methyltransferase CobM/CbiF (2.1.1.133 from EC), which introduces a methyl group at C-11 on precorrin-4 to produce precorrin-5 during cobalamin biosynthesis []. Sirohaem synthase CysG (2.1.1.107 from EC), domains 4 and 5, which synthesizes sirohaem from uroporphyrinogen III, at the first branch-point in the tetrapyrrole biosynthetic pathway, directing the pathway towards sirohaem synthesis []. Diphthine synthase (2.1.1.98 from EC), which carries out the methylation step during the modification of a specific histidine residue of elongation factor 2 (EF-2) during diphthine synthesis. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 2ZVC_A 2ZVB_A 1WDE_A 3ND1_A 2E0K_A 2E0N_B 1VA0_B 1V9A_A 3I4T_A 3NDC_B ....
Probab=24.53 E-value=1.3e+02 Score=22.46 Aligned_cols=48 Identities=17% Similarity=0.184 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHh--CCCeEEEEcCCcchhhhhcccC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHS--KGFHVTFVNTEFNHNRFIRNKG 56 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~--rGh~Vt~it~~~~~~~~~~~~~ 56 (185)
.+++++..+-.+-+.+...+.+.|.+ +|.+|.++-.-+.........|
T Consensus 77 ~~V~~l~~GDP~~~~~~~~l~~~l~~~~~gi~v~iiPGiSs~~~a~a~~g 126 (210)
T PF00590_consen 77 KDVVVLVSGDPLFFSTGSYLVRALRAEERGIEVEIIPGISSFQAAAARLG 126 (210)
T ss_dssp SEEEEEESBSTTSSSSHHHHHHHHHHHHTTCEEEEE--TTHHHHHHHHCT
T ss_pred CCEEEeCCCCCCcccHHHHHHHHHHhhcCCCceEEEecCcHHHHHHHHHc
Confidence 46888888888888899999999998 8999988866555444433333
No 442
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=24.42 E-value=1.5e+02 Score=23.13 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+|.|=-...+.||..|+++|.+|.++=.+.
T Consensus 11 GGvGKTT~a~nLA~~la~~G~~VlliD~Dp 40 (231)
T PRK13849 11 GGAGKTTALMGLCAALASDGKRVALFEADE 40 (231)
T ss_pred CCccHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 777889999999999999999999986554
No 443
>PRK06182 short chain dehydrogenase; Validated
Probab=24.36 E-value=1.6e+02 Score=23.02 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=22.3
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.+++++.+ |. --..++++|+++|++|..+.-
T Consensus 4 k~vlItGas-gg--iG~~la~~l~~~G~~V~~~~r 35 (273)
T PRK06182 4 KVALVTGAS-SG--IGKATARRLAAQGYTVYGAAR 35 (273)
T ss_pred CEEEEECCC-Ch--HHHHHHHHHHHCCCEEEEEeC
Confidence 445555544 33 356799999999999987653
No 444
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=24.35 E-value=1.3e+02 Score=21.39 Aligned_cols=26 Identities=8% Similarity=0.221 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
-...+..++|.++||.|.++|.....
T Consensus 27 ~~~ie~L~~l~~~G~~IiiaTGR~~~ 52 (126)
T TIGR01689 27 LAVIEKLRHYKALGFEIVISSSRNMR 52 (126)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCch
Confidence 35667777778999999999987654
No 445
>PRK00784 cobyric acid synthase; Provisional
Probab=24.24 E-value=1.5e+02 Score=25.98 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=26.5
Q ss_pred EEEE-cCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 11 VIVL-PYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 11 il~~-~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
|.+. |..+.|=..-...|++.|.++|++|..+-+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4444 334568889999999999999999987754
No 446
>PRK09186 flagellin modification protein A; Provisional
Probab=24.21 E-value=1.5e+02 Score=22.60 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=23.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
+.++++..+.| --..+++.|+++|++|.++..
T Consensus 5 k~vlItGas~g---iG~~~a~~l~~~g~~v~~~~r 36 (256)
T PRK09186 5 KTILITGAGGL---IGSALVKAILEAGGIVIAADI 36 (256)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCEEEEEec
Confidence 55666666532 446789999999999988753
No 447
>PRK03094 hypothetical protein; Provisional
Probab=24.15 E-value=79 Score=20.70 Aligned_cols=21 Identities=24% Similarity=0.526 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCCeEEEEcCC
Q 029948 25 MMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~ 45 (185)
+..+...|.++|++|.=+.+.
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~~ 30 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRSE 30 (80)
T ss_pred cHHHHHHHHHCCCEEEecCcc
Confidence 457899999999999876543
No 448
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=24.12 E-value=99 Score=21.84 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=21.0
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
.+++++. -|++.| +++.|.++|.+|.+++..
T Consensus 102 ~ivLvSg--D~Df~~---~i~~lr~~G~~V~v~~~~ 132 (149)
T cd06167 102 TIVLVSG--DSDFVP---LVERLRELGKRVIVVGFE 132 (149)
T ss_pred EEEEEEC--CccHHH---HHHHHHHcCCEEEEEccC
Confidence 4555554 455555 556666779999999877
No 449
>PHA02518 ParA-like protein; Provisional
Probab=24.08 E-value=1.2e+02 Score=22.64 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+|.|=-.-...||..|+++|++|.++=.+.
T Consensus 10 GGvGKTT~a~~la~~la~~g~~vlliD~D~ 39 (211)
T PHA02518 10 GGAGKTTVATNLASWLHADGHKVLLVDLDP 39 (211)
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 777888999999999999999999986553
No 450
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=23.98 E-value=83 Score=25.22 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=16.2
Q ss_pred HHHHHHHHhCCCeEEEEc
Q 029948 26 MQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 26 l~La~~La~rGh~Vt~it 43 (185)
+.+|..|+++|++|+++=
T Consensus 14 l~~A~~L~~~G~~v~i~E 31 (356)
T PF01494_consen 14 LAAALALARAGIDVTIIE 31 (356)
T ss_dssp HHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHhcccccccch
Confidence 678999999999999983
No 451
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=23.93 E-value=85 Score=23.26 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCcchhhhhc
Q 029948 23 TPMMQLAKLLHSKGFHVTFVNTEFNHNRFIR 53 (185)
Q Consensus 23 ~P~l~La~~La~rGh~Vt~it~~~~~~~~~~ 53 (185)
.-...+++.+..++.+||++|++...+....
T Consensus 81 ~~Ie~~v~~~~~~~~~v~VVTSD~~iq~~~~ 111 (166)
T PF05991_consen 81 DYIERLVRELKNRPRQVTVVTSDREIQRAAR 111 (166)
T ss_pred HHHHHHHHHhccCCCeEEEEeCCHHHHHHHh
Confidence 3456777777777889999999887665543
No 452
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.87 E-value=1.5e+02 Score=20.13 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCC-eEEEE
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGF-HVTFV 42 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh-~Vt~i 42 (185)
+..++.+++....|+....++++.+.+++. ++.++
T Consensus 50 ~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~ 85 (119)
T cd02067 50 DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVL 85 (119)
T ss_pred CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEE
Confidence 445555555555666666666666666654 45444
No 453
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=23.82 E-value=87 Score=22.80 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=20.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+|.|+-.+-+| ..+++.|.++||+|++..
T Consensus 3 ~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 3 KIGFIGLGNMG-----SAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp EEEEE--SHHH-----HHHHHHHHHTTTEEEEEE
T ss_pred EEEEEchHHHH-----HHHHHHHHhcCCeEEeec
Confidence 55666555444 578999999999999875
No 454
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=23.81 E-value=1.6e+02 Score=24.33 Aligned_cols=33 Identities=30% Similarity=0.424 Sum_probs=23.1
Q ss_pred CceEEEe-CC--ccchHHHHHHHhCCCcEEEcccch
Q 029948 116 QVTCVVS-DG--IMGFGAKAARILGIPDVQLWTASA 148 (185)
Q Consensus 116 ~~D~vI~-D~--~~~~~~~vA~~lgiP~i~~~~~~~ 148 (185)
++|+||. .. ....+..+|...|+|+|.+-|+..
T Consensus 78 ~~d~iIaiGGGs~~D~aK~~a~~~~~p~i~iPTT~~ 113 (339)
T cd08173 78 GADFVIGVGGGRVIDVAKVAAYKLGIPFISVPTAAS 113 (339)
T ss_pred CCCEEEEeCCchHHHHHHHHHHhcCCCEEEecCccc
Confidence 6899983 33 223356677788999999887764
No 455
>PRK12744 short chain dehydrogenase; Provisional
Probab=23.73 E-value=2.1e+02 Score=22.06 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=22.2
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.++++..+.| --..+++.|+++|++|.++.
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCcEEEEe
Confidence 45666665543 45679999999999976664
No 456
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=23.71 E-value=1.8e+02 Score=23.77 Aligned_cols=35 Identities=29% Similarity=0.499 Sum_probs=23.7
Q ss_pred CceEEEe-CC--ccchHHHHHHHh--CCCcEEEcccchHH
Q 029948 116 QVTCVVS-DG--IMGFGAKAARIL--GIPDVQLWTASACG 150 (185)
Q Consensus 116 ~~D~vI~-D~--~~~~~~~vA~~l--giP~i~~~~~~~~~ 150 (185)
++|+||. .. ....+..+|..+ ++|++.+-|+....
T Consensus 78 ~~d~IIaiGGGs~~D~aK~ia~~~~~~~p~i~iPTt~~tg 117 (332)
T cd07766 78 EVDAVIAVGGGSTLDTAKAVAALLNRGLPIIIVPTTAATG 117 (332)
T ss_pred CcCEEEEeCCchHHHHHHHHHHHhcCCCCEEEEeCCCchh
Confidence 6899983 32 223355666666 99999988876554
No 457
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=23.66 E-value=83 Score=27.85 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=27.9
Q ss_pred CCCCCCCCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 1 MGSIGVTKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 1 m~~~~~~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
|.+.. ..+|.|+-.+.+| ..+|+.|+++||+|++..
T Consensus 1 ~~~~~--~~~IG~IGLG~MG-----~~mA~nL~~~G~~V~V~N 36 (493)
T PLN02350 1 MASAA--LSRIGLAGLAVMG-----QNLALNIAEKGFPISVYN 36 (493)
T ss_pred CCCCC--CCCEEEEeeHHHH-----HHHHHHHHhCCCeEEEEC
Confidence 44444 4578888777666 578999999999999985
No 458
>PRK07060 short chain dehydrogenase; Provisional
Probab=23.60 E-value=2.2e+02 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCeEEEEcC
Q 029948 25 MMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~ 44 (185)
-..+++.|+++|++|.++..
T Consensus 22 G~~~a~~l~~~g~~V~~~~r 41 (245)
T PRK07060 22 GRACAVALAQRGARVVAAAR 41 (245)
T ss_pred HHHHHHHHHHCCCEEEEEeC
Confidence 45678899999999888764
No 459
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=23.60 E-value=2.5e+02 Score=24.36 Aligned_cols=40 Identities=25% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCceEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 7 TKQHVIVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 7 ~~~~il~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
...-++++|+ .+.||-.=++.|+.+++++|++|.++...+
T Consensus 124 ~~P~vvilpGltg~S~~~YVr~lv~~a~~~G~r~VVfN~RG 164 (409)
T KOG1838|consen 124 TDPIVVILPGLTGGSHESYVRHLVHEAQRKGYRVVVFNHRG 164 (409)
T ss_pred CCcEEEEecCCCCCChhHHHHHHHHHHHhCCcEEEEECCCC
Confidence 4467788887 555888999999999999999999997766
No 460
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.58 E-value=1.7e+02 Score=22.53 Aligned_cols=33 Identities=15% Similarity=0.013 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.|.++++..+. .--..++++|+++|++|.++..
T Consensus 8 ~k~~lItGas~---gIG~aia~~l~~~G~~vv~~~~ 40 (251)
T PRK12481 8 GKVAIITGCNT---GLGQGMAIGLAKAGADIVGVGV 40 (251)
T ss_pred CCEEEEeCCCc---hHHHHHHHHHHHCCCEEEEecC
Confidence 36777777664 3457889999999999987643
No 461
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.57 E-value=2.3e+02 Score=23.59 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
..|.+..-+|.|=-.-...|+..|+++|.+|-++-.+
T Consensus 32 ~ii~v~gkgG~GKSt~a~nLa~~la~~g~rVllid~D 68 (329)
T cd02033 32 QIIAIYGKGGIGKSFTLANLSYMMAQQGKRVLLIGCD 68 (329)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEee
Confidence 3455666678888899999999999999999998544
No 462
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=23.55 E-value=93 Score=25.15 Aligned_cols=32 Identities=31% Similarity=0.350 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTE 45 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~ 45 (185)
++|+|+-.+..| ..+++.|+++||+|+++...
T Consensus 2 mkI~iiG~G~mG-----~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 2 MKIAVLGAGSWG-----TALAIVLARNGHDVTLWARD 33 (325)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCEEEEEECC
Confidence 467777665555 46788999999999998654
No 463
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=23.51 E-value=1e+02 Score=21.89 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=25.6
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhC-CCeEEE
Q 029948 12 IVLPYPSQGHITPMMQLAKLLHSK-GFHVTF 41 (185)
Q Consensus 12 l~~~~p~~GH~~P~l~La~~La~r-Gh~Vt~ 41 (185)
+.++.-...|..-...||..|.+. |.+|.+
T Consensus 5 I~Ys~d~~~h~~~V~~la~~L~~~~g~~V~l 35 (150)
T PF08357_consen 5 ISYSHDSEEHKEWVLALAEFLRQNCGIDVIL 35 (150)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHhccCCceee
Confidence 356666779999999999999999 999875
No 464
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.46 E-value=1.6e+02 Score=22.91 Aligned_cols=32 Identities=13% Similarity=0.221 Sum_probs=23.9
Q ss_pred ceEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYP--SQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p--~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.+.++++.. +.| --.++++.|+++|++|.+..
T Consensus 7 ~k~~lItGa~~s~G---IG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 7 GKRILVTGVITDSS---IAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred CCEEEEeCCCCcch---HHHHHHHHHHHCCCEEEEec
Confidence 357778776 333 44678999999999998764
No 465
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=23.45 E-value=1.1e+02 Score=23.24 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEE
Q 029948 8 KQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFV 42 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~i 42 (185)
.++++++-++..| ..+++.|.+.|++|++.
T Consensus 28 gk~v~I~G~G~vG-----~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 28 GKTVAVQGLGKVG-----YKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCEEEEECCCHHH-----HHHHHHHHHCCCEEEEE
Confidence 3577777665433 67899999999999954
No 466
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=23.35 E-value=2.1e+02 Score=19.13 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=50.3
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCcchhhhhcccCCCCCCCCCCeeEEecCCCCCCCCCCCCCCHHHHHHHHHHhCcH
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTEFNHNRFIRNKGPDSLKGLPDFRFETIPDGLPPSDRDATQDLPALCSSIRKTCLA 99 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
++-.=+.++++.|.+.|+++ +++++..+.+ +. .++.+..+.. ... ..+
T Consensus 10 ~~k~~~~~~~~~l~~~G~~l--~aT~gT~~~l-~~---------~gi~~~~v~~--~~~------------------~~~ 57 (110)
T cd01424 10 RDKPEAVEIAKRLAELGFKL--VATEGTAKYL-QE---------AGIPVEVVNK--VSE------------------GRP 57 (110)
T ss_pred CcHhHHHHHHHHHHHCCCEE--EEchHHHHHH-HH---------cCCeEEEEee--cCC------------------Cch
Confidence 45667889999999999888 3555665554 22 2344433311 000 123
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCc-------cchHHHHHHHhCCCcEE
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGI-------MGFGAKAARILGIPDVQ 142 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~-------~~~~~~vA~~lgiP~i~ 142 (185)
.+.+++++ .++|+||.-+- ..+....|-++|||+++
T Consensus 58 ~i~~~i~~-------~~id~vIn~~~~~~~~~~~~~iRR~Av~~~ipl~T 100 (110)
T cd01424 58 NIVDLIKN-------GEIQLVINTPSGKRAIRDGFSIRRAALEYKVPYFT 100 (110)
T ss_pred hHHHHHHc-------CCeEEEEECCCCCccCccHHHHHHHHHHhCCCEEe
Confidence 34444543 47999986321 12345678999999984
No 467
>PRK08303 short chain dehydrogenase; Provisional
Probab=23.33 E-value=1.6e+02 Score=23.87 Aligned_cols=32 Identities=19% Similarity=0.170 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.++++++..+.| --.+++++|+++|++|.++.
T Consensus 8 ~k~~lITGgs~G---IG~aia~~la~~G~~Vv~~~ 39 (305)
T PRK08303 8 GKVALVAGATRG---AGRGIAVELGAAGATVYVTG 39 (305)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCEEEEEe
Confidence 367888887754 45899999999999998864
No 468
>PF14626 RNase_Zc3h12a_2: Zc3h12a-like Ribonuclease NYN domain
Probab=23.32 E-value=1e+02 Score=21.87 Aligned_cols=30 Identities=7% Similarity=0.206 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHhCCCeEEEEcCCcchhhh
Q 029948 22 ITPMMQLAKLLHSKGFHVTFVNTEFNHNRF 51 (185)
Q Consensus 22 ~~P~l~La~~La~rGh~Vt~it~~~~~~~~ 51 (185)
+.|+.++.-.+.-|||++|++-+.-+.+.+
T Consensus 9 Vk~L~eIll~FilrGHKT~vyLP~yY~~~~ 38 (122)
T PF14626_consen 9 VKALVEILLHFILRGHKTVVYLPKYYKNYV 38 (122)
T ss_pred HHHHHHHHHHHHhccCeeEEEChHHHhccc
Confidence 367888888899999999999887665543
No 469
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=23.31 E-value=6e+02 Score=23.49 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=26.9
Q ss_pred eEEEEcC-CCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPY-PSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~-p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.|.+.+. ++.|=-.-.+.|++.|.++|.+|.++-
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fK 38 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFK 38 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeC
Confidence 4555533 456888899999999999999999864
No 470
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=23.30 E-value=1.6e+02 Score=22.26 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=21.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.++++..+ |++ -..+++.|+++|++|.++..
T Consensus 2 ~~lItG~s-g~i--G~~la~~l~~~G~~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGM-GGI--GTAICQRLAKDGYRVAANCG 32 (242)
T ss_pred EEEEECCC-ChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34555443 555 46779999999999877654
No 471
>PRK08862 short chain dehydrogenase; Provisional
Probab=23.27 E-value=2e+02 Score=22.07 Aligned_cols=31 Identities=6% Similarity=0.095 Sum_probs=23.7
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.++++..+. . --..++++|+++|++|.++.
T Consensus 6 k~~lVtGas~-G--IG~aia~~la~~G~~V~~~~ 36 (227)
T PRK08862 6 SIILITSAGS-V--LGRTISCHFARLGATLILCD 36 (227)
T ss_pred eEEEEECCcc-H--HHHHHHHHHHHCCCEEEEEc
Confidence 5677777664 2 35789999999999988864
No 472
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. This protein is about double in length of, and devoid of homology to the form of phosphoglycerate mutase that uses 2,3-bisphosphoglycerate as a cofactor.
Probab=23.26 E-value=1.7e+02 Score=26.09 Aligned_cols=39 Identities=18% Similarity=0.356 Sum_probs=29.2
Q ss_pred CCCceEE-EEcCCC-CCChHHHHHHHHHHHhCCC-e--EEEEcC
Q 029948 6 VTKQHVI-VLPYPS-QGHITPMMQLAKLLHSKGF-H--VTFVNT 44 (185)
Q Consensus 6 ~~~~~il-~~~~p~-~GH~~P~l~La~~La~rGh-~--Vt~it~ 44 (185)
+++.|++ +++-++ .||++=+..|.+...++|. + |++++.
T Consensus 105 ~~~lHl~GL~SdGgVHsh~~hl~~l~~~a~~~g~~~v~vH~~~D 148 (501)
T TIGR01307 105 NGKLHLMGLVSDGGVHSHIDHLIALIELAAERGIEKVVLHAFTD 148 (501)
T ss_pred CCceEEEEeccCCCCcchHHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 4567887 444444 4999999999999999997 3 455553
No 473
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=23.25 E-value=1.4e+02 Score=23.90 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 7 TKQHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 7 ~~~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
-..++++++..+.|== .++|++|++.|.+|++.....
T Consensus 6 l~gkvalVTG~s~GIG---~aia~~la~~Ga~v~i~~r~~ 42 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIG---KAIALLLAKAGAKVVITGRSE 42 (270)
T ss_pred CCCcEEEEECCCChHH---HHHHHHHHHCCCEEEEEeCCH
Confidence 3568899998877422 899999999999999986543
No 474
>PF07972 Flavodoxin_NdrI: NrdI Flavodoxin like ; InterPro: IPR004465 Ribonucleotide reductases (RNRs) are enzymes that provide the precursors of DNA synthesis. The three characterised classes of RNRs differ by their metal cofactor and their stable organic radical. Class Ib RNR is encoded in four different genes: nrdH, nrdI, nrdE and nrdF []. The exact function of NrdI within the ribonucleotide reductases has not yet been fully characterised.; PDB: 1RLJ_A 3N39_C 3N3B_D 3N3A_C 2XOE_A 2XOD_A 2X2P_A 2X2O_A.
Probab=23.22 E-value=62 Score=22.91 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHhhCCCCCCceEEEe-------CCccchHHHHHHHhCCCcEE
Q 029948 98 LAPFLELLGKLNSAGNVPQVTCVVS-------DGIMGFGAKAARILGIPDVQ 142 (185)
Q Consensus 98 ~~~~~~ll~~l~~~~~~~~~D~vI~-------D~~~~~~~~vA~~lgiP~i~ 142 (185)
...+.++|+.-.+. ...-.||. +.|+..+..+|+++++|++.
T Consensus 58 p~~v~~FL~~~~N~---~~l~GVigSGNrNfg~~f~~aa~~ia~ky~VPll~ 106 (122)
T PF07972_consen 58 PKQVIRFLENPDNR---KLLRGVIGSGNRNFGDNFCLAADKIAEKYGVPLLY 106 (122)
T ss_dssp -HHHHHHHHSHHHG---GGEEEEEEEE-GGGGGGTTHHHHHHHHHHT--EEE
T ss_pred CHHHHHHHHHHHHH---hhheeEEecCCcHHHHHHHHHHHHHHHHcCCCEEE
Confidence 45666777633222 23445553 34444466799999999985
No 475
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=23.21 E-value=2.2e+02 Score=21.10 Aligned_cols=27 Identities=15% Similarity=0.271 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCe
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFH 38 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~ 38 (185)
|||+|+.++.. ..+..+..+|.+++++
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~ 27 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHN 27 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCC
Confidence 58888866664 4566677899999987
No 476
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=23.19 E-value=1.6e+02 Score=23.83 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=22.9
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.+++++.+.| --.+++++|+++|++|.++.
T Consensus 7 k~vlVTGas~g---IG~~~a~~L~~~G~~V~~~~ 37 (322)
T PRK07453 7 GTVIITGASSG---VGLYAAKALAKRGWHVIMAC 37 (322)
T ss_pred CEEEEEcCCCh---HHHHHHHHHHHCCCEEEEEE
Confidence 55667765532 34678999999999998875
No 477
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=23.17 E-value=2.5e+02 Score=23.41 Aligned_cols=47 Identities=4% Similarity=0.085 Sum_probs=34.6
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchH---HHHHHHhCCCcEEEcccchHHH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFG---AKAARILGIPDVQLWTASACGF 151 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~---~~vA~~lgiP~i~~~~~~~~~~ 151 (185)
.+++...++.+ +.|.|++=+..+.. ..+.+++++|.+.|..++-+++
T Consensus 222 Alre~~~D~~E-----GAD~lMVKPal~YLDIi~~~k~~~~~PvaaYqVSGEYaM 271 (314)
T cd00384 222 ALREVELDIEE-----GADILMVKPALAYLDIIRDVRERFDLPVAAYNVSGEYAM 271 (314)
T ss_pred HHHHHHhhHHh-----CCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHH
Confidence 44545444443 67999988876653 5688899999999999997764
No 478
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=23.15 E-value=81 Score=20.60 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEcCCc
Q 029948 25 MMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 25 ~l~La~~La~rGh~Vt~it~~~ 46 (185)
+-.+...|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 5578899999999999887554
No 479
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=23.11 E-value=1.8e+02 Score=26.04 Aligned_cols=41 Identities=22% Similarity=0.278 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccchHHHHHHHhCCCcEEEccc
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMGFGAKAARILGIPDVQLWTA 146 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~~~vA~~lgiP~i~~~~~ 146 (185)
..++..++++.+ .++++||-|. -+..+|+++|++.+.....
T Consensus 132 ~e~~~~~~~l~~----~G~~~viG~~---~~~~~A~~~gl~~ili~s~ 172 (526)
T TIGR02329 132 EDARSCVNDLRA----RGIGAVVGAG---LITDLAEQAGLHGVFLYSA 172 (526)
T ss_pred HHHHHHHHHHHH----CCCCEEECCh---HHHHHHHHcCCceEEEecH
Confidence 466667777765 4799999987 3468999999999988764
No 480
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=23.00 E-value=2e+02 Score=20.54 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=25.8
Q ss_pred eEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
.|.++-+-..|=-.-+..|.+.|.++|++|.++-
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 4556666667888889999999999999998664
No 481
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=23.00 E-value=88 Score=25.33 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=26.4
Q ss_pred EEcCCCC--CChHHHHHHHHHHHhCCCeEEEEcCCc
Q 029948 13 VLPYPSQ--GHITPMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 13 ~~~~p~~--GH~~P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+-|++.. ||+.+.+.....|++.|+++.++..+.
T Consensus 6 ~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ 41 (280)
T cd00806 6 IQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADL 41 (280)
T ss_pred eCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecch
Confidence 3444433 999998889999999999998886654
No 482
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=22.95 E-value=1.6e+02 Score=26.30 Aligned_cols=40 Identities=18% Similarity=0.298 Sum_probs=31.7
Q ss_pred eEEEEcCCCCCCh---HHHHHHHHHHHhCCCeEEEEcCCcchh
Q 029948 10 HVIVLPYPSQGHI---TPMMQLAKLLHSKGFHVTFVNTEFNHN 49 (185)
Q Consensus 10 ~il~~~~p~~GH~---~P~l~La~~La~rGh~Vt~it~~~~~~ 49 (185)
|..|++++-.|=+ .-...|++.|.+||++||.+-.+.+..
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~~g~~v~~~K~DpYlN 44 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKARGLKVTIIKIDPYIN 44 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHhCCCceEEEeeccccc
Confidence 5677777665444 778899999999999999998776643
No 483
>PRK06197 short chain dehydrogenase; Provisional
Probab=22.91 E-value=2.2e+02 Score=22.75 Aligned_cols=33 Identities=24% Similarity=0.187 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+.+++++.+ |- --..+++.|+++|++|.++.-
T Consensus 16 ~k~vlItGas-~g--IG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 16 GRVAVVTGAN-TG--LGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred CCEEEEcCCC-Cc--HHHHHHHHHHHCCCEEEEEeC
Confidence 4667777765 32 246789999999999877653
No 484
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=22.89 E-value=1.2e+02 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=27.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEc
Q 029948 11 VIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 11 il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it 43 (185)
|+=++.+|.|=.=-.+.|++.|.++|+++.+++
T Consensus 61 VGNitvGGTGKTP~v~~La~~l~~~G~~~~IlS 93 (338)
T PRK01906 61 VGNVTVGGTGKTPTVIALVDALRAAGFTPGVVS 93 (338)
T ss_pred ECCccCCCCChHHHHHHHHHHHHHcCCceEEEe
Confidence 334677888888888899999999999998875
No 485
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=22.82 E-value=1.4e+02 Score=24.77 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=26.8
Q ss_pred EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 13 VLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 13 ~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
=++.+|.|=.=-...|++.|.++|+++.+++=
T Consensus 35 NitvGGTGKTP~v~~La~~l~~~G~~~~IlSR 66 (311)
T TIGR00682 35 NLSVGGTGKTPVVVWLAELLKDRGLRVGVLSR 66 (311)
T ss_pred ccccCCcChHHHHHHHHHHHHHCCCEEEEECC
Confidence 35578888888888999999999999998763
No 486
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=22.77 E-value=1.7e+02 Score=24.71 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred eEE--EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 10 HVI--VLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 10 ~il--~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
||+ +-.||..||..-..++ .+|.++||+|++++....
T Consensus 2 ~ia~~~~~~P~~setFi~~ei-~~l~~~G~~v~~~s~~~~ 40 (406)
T PRK15427 2 KVGFFLLKFPLSSETFVLNQI-TAFIDMGFEVEIVALQKG 40 (406)
T ss_pred eEEEEeccCCccchhhHHHHH-HHHHHcCceEEEEEccCC
Confidence 444 4467888998877665 568899999999986543
No 487
>PRK10985 putative hydrolase; Provisional
Probab=22.76 E-value=2.5e+02 Score=22.81 Aligned_cols=39 Identities=8% Similarity=0.032 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCCChH-HHHHHHHHHHhCCCeEEEEcCCc
Q 029948 8 KQHVIVLPYPSQGHIT-PMMQLAKLLHSKGFHVTFVNTEF 46 (185)
Q Consensus 8 ~~~il~~~~p~~GH~~-P~l~La~~La~rGh~Vt~it~~~ 46 (185)
+.-|+++.+.+.++-. -+..+++.|+++|++|..+--.+
T Consensus 58 ~p~vll~HG~~g~~~~~~~~~~~~~l~~~G~~v~~~d~rG 97 (324)
T PRK10985 58 KPRLVLFHGLEGSFNSPYAHGLLEAAQKRGWLGVVMHFRG 97 (324)
T ss_pred CCEEEEeCCCCCCCcCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3456666654433222 35679999999999988875443
No 488
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=22.69 E-value=2.4e+02 Score=23.51 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccchH---HHHHHHhCCCcEEEcccchHHHH
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGFG---AKAARILGIPDVQLWTASACGFL 152 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~~---~~vA~~lgiP~i~~~~~~~~~~~ 152 (185)
.+++...++.+ +.|.|++=+..+.. ..+.+++++|.+.|..++-+++-
T Consensus 227 Alre~~~Di~E-----GAD~lMVKPal~YLDIi~~~k~~~~lPvaaYqVSGEYaMi 277 (320)
T cd04823 227 ALREVALDIAE-----GADMVMVKPGMPYLDIIRRVKDEFGVPTFAYQVSGEYAML 277 (320)
T ss_pred HHHHHHhhHHh-----CCCEEEEcCCchHHHHHHHHHHhcCCCEEEEEccHHHHHH
Confidence 44555445443 67999988876553 56778899999999999987643
No 489
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=22.66 E-value=2.2e+02 Score=23.39 Aligned_cols=44 Identities=16% Similarity=0.087 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhCCCCCCceEEEeCCccch--HHHHHHHhCCCcEEEcccc
Q 029948 100 PFLELLGKLNSAGNVPQVTCVVSDGIMGF--GAKAARILGIPDVQLWTAS 147 (185)
Q Consensus 100 ~~~~ll~~l~~~~~~~~~D~vI~D~~~~~--~~~vA~~lgiP~i~~~~~~ 147 (185)
.+.++.+.+++ .+..||+.+...+- +..++++.|++.+.+-+..
T Consensus 240 ~l~~l~~~ik~----~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldpl~ 285 (311)
T PRK09545 240 RLHEIRTQLVE----QKATCVFAEPQFRPAVIESVAKGTSVRMGTLDPLG 285 (311)
T ss_pred HHHHHHHHHHH----cCCCEEEecCCCChHHHHHHHHhcCCeEEEecccc
Confidence 45556666554 46889999987755 3579999999887765443
No 490
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=22.55 E-value=2e+02 Score=22.27 Aligned_cols=34 Identities=15% Similarity=0.114 Sum_probs=24.7
Q ss_pred CceEEEEcCCCC-CChHHHHHHHHHHHhCCCeEEEEc
Q 029948 8 KQHVIVLPYPSQ-GHITPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 8 ~~~il~~~~p~~-GH~~P~l~La~~La~rGh~Vt~it 43 (185)
+.|+++++..+. +- -=..++++|+++|++|.+..
T Consensus 6 ~~k~~lItGas~~~g--IG~a~a~~la~~G~~Vi~~~ 40 (252)
T PRK06079 6 SGKKIVVMGVANKRS--IAWGCAQAIKDQGATVIYTY 40 (252)
T ss_pred CCCEEEEeCCCCCCc--hHHHHHHHHHHCCCEEEEec
Confidence 346778887762 11 23889999999999988764
No 491
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=22.50 E-value=1.7e+02 Score=21.20 Aligned_cols=30 Identities=23% Similarity=0.009 Sum_probs=19.5
Q ss_pred CceEEEeCCccch---HHHHHHHhCCCcEEEcc
Q 029948 116 QVTCVVSDGIMGF---GAKAARILGIPDVQLWT 145 (185)
Q Consensus 116 ~~D~vI~D~~~~~---~~~vA~~lgiP~i~~~~ 145 (185)
+||+|+.-..... +..+|.++|.|++.-.+
T Consensus 90 ~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~ 122 (164)
T PF01012_consen 90 GPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVT 122 (164)
T ss_dssp T-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEE
T ss_pred CCCEEEEcCcCCCCcHHHHHHHHhCCCccceEE
Confidence 6899886543322 46799999999987544
No 492
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=22.48 E-value=1.6e+02 Score=23.89 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCCChHHHHHHHHHHHhCCCeEEEEcCCcc
Q 029948 17 PSQGHITPMMQLAKLLHSKGFHVTFVNTEFN 47 (185)
Q Consensus 17 p~~GH~~P~l~La~~La~rGh~Vt~it~~~~ 47 (185)
+|.|=-.-...||-+|+..|+.|-++=.+..
T Consensus 10 GGvGKSTva~~lA~aLa~~G~kVg~lD~Di~ 40 (261)
T PF09140_consen 10 GGVGKSTVAVNLAVALARMGKKVGLLDLDIR 40 (261)
T ss_dssp TTTTHHHHHHHHHHHHHCTT--EEEEE--TT
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6778889999999999999999999865543
No 493
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=22.48 E-value=2.1e+02 Score=21.90 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCCChHHHHHHHHHHHhCCCeEEEEcC
Q 029948 9 QHVIVLPYPSQGHITPMMQLAKLLHSKGFHVTFVNT 44 (185)
Q Consensus 9 ~~il~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~ 44 (185)
.+.++++..+ |.+ -..++++|+++|++|.++.-
T Consensus 7 ~~~vlItGas-g~i--G~~la~~l~~~G~~v~~~~r 39 (262)
T PRK13394 7 GKTAVVTGAA-SGI--GKEIALELARAGAAVAIADL 39 (262)
T ss_pred CCEEEEECCC-ChH--HHHHHHHHHHCCCeEEEEeC
Confidence 3556666555 433 45689999999999987654
No 494
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=22.46 E-value=2.6e+02 Score=24.21 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=31.6
Q ss_pred ceEE-EEcCCCCCChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 9 QHVI-VLPYPSQGHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 9 ~~il-~~~~p~~GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
.+++ ++-..|.|=..-+..||..+..+|++|.+++.+.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 4454 444456688899999999999999999999987653
No 495
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=22.41 E-value=1.9e+02 Score=21.87 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCceEEEeCCccch--HHHHHHHhC---CCcEEEcccc
Q 029948 115 PQVTCVVSDGIMGF--GAKAARILG---IPDVQLWTAS 147 (185)
Q Consensus 115 ~~~D~vI~D~~~~~--~~~vA~~lg---iP~i~~~~~~ 147 (185)
.++|+++.|..++. +.++++++. .|.+.|.+..
T Consensus 46 ~~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~vt~~ 83 (238)
T PRK11697 46 LKPDVVFLDIQMPRISGLELVGMLDPEHMPYIVFVTAF 83 (238)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEEEecc
Confidence 36899999986643 567777664 3555555543
No 496
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=22.28 E-value=1.6e+02 Score=26.31 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=19.6
Q ss_pred CceEEEeCCccchHHHHHHHhCCCcEEE
Q 029948 116 QVTCVVSDGIMGFGAKAARILGIPDVQL 143 (185)
Q Consensus 116 ~~D~vI~D~~~~~~~~vA~~lgiP~i~~ 143 (185)
++|++|.+. .+..+|+++|||.+-+
T Consensus 437 ~~DlliG~s---~~k~~a~~~giPlir~ 461 (515)
T TIGR01286 437 PVDFLIGNS---YGKYIQRDTLVPLIRI 461 (515)
T ss_pred CCCEEEECc---hHHHHHHHcCCCEEEe
Confidence 688888664 4678899999999743
No 497
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=22.27 E-value=1e+02 Score=24.94 Aligned_cols=34 Identities=18% Similarity=0.440 Sum_probs=28.4
Q ss_pred eEEEEcCCCCCCh-HHHHHHHHHHHhCCCeEEEEc
Q 029948 10 HVIVLPYPSQGHI-TPMMQLAKLLHSKGFHVTFVN 43 (185)
Q Consensus 10 ~il~~~~p~~GH~-~P~l~La~~La~rGh~Vt~it 43 (185)
=+++.++|+.=|+ .|..+++..|.+.|.+..++.
T Consensus 73 V~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~ 107 (268)
T PF04609_consen 73 VAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIG 107 (268)
T ss_pred EEEEeCCcccccCCCcHHHHHHHHHHcCCccceEE
Confidence 3567888999998 899999999999997765553
No 498
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.27 E-value=1.9e+02 Score=25.91 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEeCCccc--h----HHHHHHHhCCCcEEE
Q 029948 99 APFLELLGKLNSAGNVPQVTCVVSDGIMG--F----GAKAARILGIPDVQL 143 (185)
Q Consensus 99 ~~~~~ll~~l~~~~~~~~~D~vI~D~~~~--~----~~~vA~~lgiP~i~~ 143 (185)
..++++++.+.++ ++| +||++.-.. . ...+|+++|+|++..
T Consensus 209 ~~i~~~~~~L~~A---krP-vil~G~g~~~~~a~~~l~~lae~~g~pv~tt 255 (587)
T PRK06965 209 GQIRKAVSLLLSA---KRP-YIYTGGGVILANASRELRQLADLLGYPVTNT 255 (587)
T ss_pred HHHHHHHHHHHhc---CCC-EEEECCCccccchHHHHHHHHHHhCCCEEEc
Confidence 3466666666654 467 777665442 1 246899999998854
No 499
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=22.26 E-value=1.4e+02 Score=21.93 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=21.1
Q ss_pred eEEEEcCC--CCCChHHHHHHHHHHHhCCCeEEE
Q 029948 10 HVIVLPYP--SQGHITPMMQLAKLLHSKGFHVTF 41 (185)
Q Consensus 10 ~il~~~~p--~~GH~~P~l~La~~La~rGh~Vt~ 41 (185)
+|.++.+- ..-+..-..+|++.|+++||.|..
T Consensus 3 ~I~V~gss~~~~~~~~~A~~lg~~La~~g~~lv~ 36 (159)
T TIGR00725 3 QIGVIGSSNKSEELYEIAYRLGKELAKKGHILIN 36 (159)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEc
Confidence 45555443 334556678899999999984433
No 500
>COG4081 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.25 E-value=82 Score=22.75 Aligned_cols=29 Identities=34% Similarity=0.444 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHhCCCeEEEEcCCcch
Q 029948 20 GHITPMMQLAKLLHSKGFHVTFVNTEFNH 48 (185)
Q Consensus 20 GH~~P~l~La~~La~rGh~Vt~it~~~~~ 48 (185)
--+-..+-++.+|-++|.+||+..++...
T Consensus 16 ~qissaiYls~klkkkgf~v~VaateAa~ 44 (148)
T COG4081 16 PQISSAIYLSHKLKKKGFDVTVAATEAAL 44 (148)
T ss_pred ccchHHHHHHHHhhccCccEEEecCHhhh
Confidence 33455678999999999999999877644
Done!