BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 029950
(185 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8H1Q1|TL225_ARATH Thylakoid lumenal protein At1g12250, chloroplastic OS=Arabidopsis
thaliana GN=At1g12250 PE=1 SV=1
Length = 280
Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 110/180 (61%), Positives = 134/180 (74%), Gaps = 8/180 (4%)
Query: 1 MALSSISPLSIKSLNFCSSSSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQ--- 57
MA SS+SPL +KSL+ SSS + + L Q+SS+ S+ + D SN +
Sbjct: 1 MAFSSLSPLPMKSLDISRSSSSVSRSPYHFQRYLLRRLQLSSR--SNLEIKDSSNTREGC 58
Query: 58 CAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSAD 117
C+ A+ W+ +S A+AAAV+AS SS + A+A+LN++EA+TRGEFGIGSAAQ+GSAD
Sbjct: 59 CSS--AESNTWKRILSAAMAAAVIAS-SSGVPAMAELNRFEADTRGEFGIGSAAQYGSAD 115
Query: 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMV 177
L K VH ENFRRANFTSADMRESDFSGS FNGAYLEKAVAYKANF+GADLSDTLMDRMV
Sbjct: 116 LSKTVHSNENFRRANFTSADMRESDFSGSTFNGAYLEKAVAYKANFSGADLSDTLMDRMV 175
>sp|P74297|SPKB_SYNY3 Serine/threonine-protein kinase B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=spkB PE=1 SV=1
Length = 574
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Query: 71 FVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRR 130
V LA A V + + L + N +AE + A FG A L+ + N
Sbjct: 456 LVGIVLAKAFVPGINCYQANLTNANFEQAEL-------TRADFGKARLKNVIFKGANLSD 508
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
A F AD+R +D G+ NG + A ANF+GADL
Sbjct: 509 AYFGYADLRGADLRGANLNGVNFKYANLQGANFSGADL 546
>sp|Q55837|Y516_SYNY3 Uncharacterized protein slr0516 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr0516 PE=4 SV=1
Length = 166
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 127 NFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
+ R N +A + SD SG+ +G L +A+ +AN TGA+LS+T
Sbjct: 49 DLREFNLENARLNRSDLSGANLSGVNLRRALLDRANLTGANLSET 93
Score = 36.6 bits (83), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRES-----DFSGSKFNGAYLEKAVAYKANF 163
S A +LR+A+ + N AN + D+ E+ + +G+ +GA LE++ +
Sbjct: 66 SGANLSGVNLRRALLDRANLTGANLSETDLTEAALTEANLAGADLSGANLERSFLRDVDL 125
Query: 164 TGADL 168
TGA+L
Sbjct: 126 TGANL 130
>sp|P73063|Y1851_SYNY3 Uncharacterized protein slr1851 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1851 PE=4 SV=1
Length = 162
Score = 37.0 bits (84), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 131 ANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
AN AD+ +D SG+K GA L KA +A+ GADL
Sbjct: 88 ANLVGADLTNADLSGAKLGGADLRKANLSEASLRGADL 125
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A+ G ADLRKA N + A +R +D G A L +A+ TGA +
Sbjct: 101 SGAKLGGADLRKA----------NLSEASLRGADLRGVNLIEANLTNTDFSEADLTGAYI 150
Query: 169 SDTLMDRMVKL 179
SD + +V L
Sbjct: 151 SDGAVINVVNL 161
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 25/58 (43%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
AQ SA L+ A N AD+ +D SG+ GA L A A GADL
Sbjct: 53 AQLDSATLKNANLALANMTEVCLIYADLSNADLSGANLVGADLTNADLSGAKLGGADL 110
>sp|Q8ZMM8|PIPB2_SALTY Secreted effector protein pipB2 OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB2 PE=1 SV=1
Length = 350
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
G +L+ AV AN TS ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT 202
>sp|P05530|MCBG_ECOLX Protein McbG OS=Escherichia coli GN=mcbG PE=4 SV=1
Length = 187
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 13/127 (10%)
Query: 50 FPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEFGIGS 109
F DC +C +KN + L + C L +N + F + +
Sbjct: 38 FRDCEFEKCRFVNCSIKNLK------LNFFKLIDCEFKDCLLQGVNAADIMFPCTFSLVN 91
Query: 110 A----AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT- 164
F S L+K++ + FR F D+R+SDF+GS+FN + +F+
Sbjct: 92 CDLRFVDFISLRLQKSIFLSCRFRDCLFEETDLRKSDFTGSEFNNTEFRHSDLSHCDFSM 151
Query: 165 --GADLS 169
G D++
Sbjct: 152 TEGLDIN 158
>sp|P73709|Y1819_SYNY3 Uncharacterized protein slr1819 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1819 PE=4 SV=1
Length = 331
Score = 35.8 bits (81), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
Query: 100 ETRGEFGIGSAAQFGSADLR----KAVHVKE------NFRRANFTSADMRESDFSGSKFN 149
E +G + AA G ADL+ K V + N + AN D+R++D S +
Sbjct: 140 EKKGYYTNLQAAILGRADLQGANMKGVDLSRADLSYANLKEANLRDVDLRKADLSYANLK 199
Query: 150 GAYLEKAVAYKANFTGADLSD 170
GA L A A GADL +
Sbjct: 200 GALLTDANLSGAKLNGADLQN 220
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 98 EAETRGE---FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLE 154
EA+ RG F + A G A+L V N A+ AD+ +D + F+GA L+
Sbjct: 39 EADLRGANLLFCYLNRANLGQANL-----VAANLSGASLNQADLAGADLRSANFHGAMLQ 93
Query: 155 KAVAYKANFTGADLSDT 171
A+ ++ T A L DT
Sbjct: 94 GAILRDSDMTLATLQDT 110
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A A+LR K + AN A + +++ SG+K NGA L+ A +A + A++
Sbjct: 174 SYANLKEANLRDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEM 233
Query: 169 S 169
+
Sbjct: 234 T 234
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 113 FGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTL 172
ADLR A + RAN A++ ++ SG+ N A L A ANF GA L +
Sbjct: 37 LNEADLRGANLLFCYLNRANLGQANLVAANLSGASLNQADLAGADLRSANFHGAMLQGAI 96
Query: 173 M 173
+
Sbjct: 97 L 97
>sp|Q5PEX4|PIPB2_SALPA Secreted effector protein pipB2 OS=Salmonella paratyphi A (strain
ATCC 9150 / SARB42) GN=pipB2 PE=3 SV=1
Length = 350
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT 202
>sp|Q57KZ6|PIPB2_SALCH Secreted effector protein pipB2 OS=Salmonella choleraesuis (strain
SC-B67) GN=pipB2 PE=3 SV=1
Length = 350
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS T
Sbjct: 150 GGMNLKGAV-----LTGANLTAENLCDADLSGANLEGAVLFMADCEGANFKGANLSGT 202
>sp|Q52118|YMO3_ERWST Uncharacterized protein in mobD 3'region OS=Erwinia stewartii PE=4
SV=1
Length = 295
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTG 165
S A +ADL++A N AN T+ D++ +D S + GA L N TG
Sbjct: 230 SNANLSNADLKRADLSDANLSDANLTNVDLKRADLSNAILKGANLLHINVEGTNMTG 286
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A DL N AN T A + E+D S + + A L++A AN +GADL++
Sbjct: 137 ANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTN 196
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A +ADL++A N A+ T+A++ ++D +GA L A A + ADL
Sbjct: 170 SNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNLSGANLAHANLTMAYLSEADL 229
Query: 169 SD 170
S+
Sbjct: 230 SN 231
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
S A A+L A + + AN ++AD++ +D S + +GA L A + + +L
Sbjct: 150 SGANLAHANLTMAYLSEADLSNANLSNADLKRADLSNANLSGADLTNANLNQTDLPNVNL 209
Query: 169 S 169
S
Sbjct: 210 S 210
Score = 30.0 bits (66), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170
A DL N AN T A + E+D S + + A L++A AN + A+L++
Sbjct: 197 ANLNQTDLPNVNLSGANLAHANLTMAYLSEADLSNANLSNADLKRADLSDANLSDANLTN 256
Query: 171 TLMDR 175
+ R
Sbjct: 257 VDLKR 261
>sp|Q9SE95|FIP2_ARATH FH protein interacting protein FIP2 OS=Arabidopsis thaliana GN=FIP2
PE=1 SV=1
Length = 298
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 111 AQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
A+F +AD ++ R FTSA++R + +G+ A L+ A +F GADL
Sbjct: 171 AKFRNADAEGSIFHNAILRECEFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADL 228
Score = 33.9 bits (76), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 112 QFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADL 168
+F SA+LR A+ N + AN A + F G+ A+L+ A AN GA+L
Sbjct: 192 EFTSANLRGALLAGTNLQSANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANL 248
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 99 AETRGEFGIGSAAQFGSADLRKAVHVKENF-----RRANFTSADMRESDFSGSKFNGAYL 153
A RG G+ Q SA+L+ A V +F R A+ +AD+ ++ G+ GA L
Sbjct: 196 ANLRGALLAGTNLQ--SANLQDACLVGCSFCGADLRTAHLQNADLTNANLEGANLEGANL 253
Query: 154 EKAVAYKANFTGADL 168
+ A ANF GA+L
Sbjct: 254 KGAKLSNANFKGANL 268
>sp|P81760|TL17_ARATH Thylakoid lumenal 17.4 kDa protein, chloroplastic OS=Arabidopsis
thaliana GN=At5g53490 PE=1 SV=2
Length = 236
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 110 AAQFGSADLR-----KAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFT 164
A+F AD+ KA V+ +F+ NFT+A + +F S GA V + F
Sbjct: 138 GAKFDGADMTEVVMSKAYAVEASFKGVNFTNAVIDRVNFGKSNLKGAVFRNTVLSGSTFE 197
Query: 165 GADLSDTLMDRMV 177
A+L D + + +
Sbjct: 198 EANLEDVVFEDTI 210
>sp|P85304|TL18_SPIOL Thylakoid lumenal 18.3 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 18
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 15/18 (83%), Positives = 16/18 (88%)
Query: 93 DLNKYEAETRGEFGIGSA 110
DLNK+EAE RGEFGI SA
Sbjct: 1 DLNKFEAEMRGEFGIXSA 18
>sp|Q8Z4G9|PIPB2_SALTI Secreted effector protein pipB2 OS=Salmonella typhi GN=pipB2 PE=3
SV=1
Length = 350
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
Query: 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
G +L+ AV AN T+ ++ ++D SG+ GA L A ANF GA+LS
Sbjct: 150 GGMNLKGAV-----LTGANLTAENLCDADLSGADLEGAILFMADCDGANFKGANLS 200
>sp|P37497|YYBG_BACSU Uncharacterized protein YybG OS=Bacillus subtilis (strain 168)
GN=yybG PE=4 SV=1
Length = 279
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 115 SADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGA-YLEKAVAYKAN 162
+ADLR A + R +F ADMR++D SG+ G+ +L +A AN
Sbjct: 218 AADLRNA-----DLRMTDFIGADMRDADLSGADLTGSIFLTQAQVNAAN 261
>sp|O22160|TL15A_ARATH Thylakoid lumenal 15 kDa protein 1, chloroplastic OS=Arabidopsis
thaliana GN=At2g44920 PE=1 SV=2
Length = 224
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 110 AAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKA-NFTGADL 168
A F ADL A + + R A+F+ A++ + + + + GA + ++K N TGAD
Sbjct: 130 GASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVTGNTSFKGSNITGADF 189
Query: 169 SDTLM--DRMVKL 179
+D + D+ V L
Sbjct: 190 TDVPLRDDQRVYL 202
Score = 30.4 bits (67), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLS 169
A+ + A + +F A+ T AD+ E+D G+ F+ A + K AN GA ++
Sbjct: 121 ANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATVT 174
>sp|Q8ZQ59|PIPB_SALTY Secreted effector protein PipB OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=pipB PE=2 SV=1
Length = 291
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 116 ADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-AVAYKANFTGADLS 169
A+L A N N T+A + SD + +K NGA L+K A+ TGADL+
Sbjct: 214 ANLTHADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLT 268
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.125 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,258,606
Number of Sequences: 539616
Number of extensions: 2248172
Number of successful extensions: 4982
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4849
Number of HSP's gapped (non-prelim): 105
length of query: 185
length of database: 191,569,459
effective HSP length: 110
effective length of query: 75
effective length of database: 132,211,699
effective search space: 9915877425
effective search space used: 9915877425
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)