Query 029950
Match_columns 185
No_of_seqs 115 out of 1621
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 09:37:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029950.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029950hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j8k_A NP275-NP276; pentapepti 99.9 4.3E-26 1.5E-30 176.7 1.6 57 125-181 134-190 (201)
2 2j8k_A NP275-NP276; pentapepti 99.9 3.3E-26 1.1E-30 177.3 0.8 74 109-182 123-196 (201)
3 2w7z_A EFSQNR, pentapeptide re 99.9 3.8E-27 1.3E-31 183.8 -5.2 157 20-184 42-198 (214)
4 2xt2_A ALBG, MCBG-like protein 99.9 1.1E-26 3.9E-31 178.8 -2.6 172 5-184 5-183 (200)
5 2bm5_A MFPA, RV3361C, pentapep 99.9 5.5E-27 1.9E-31 179.3 -4.6 149 23-184 20-168 (186)
6 2xty_A QNRB1; cell cycle, pent 99.9 1.6E-25 5.3E-30 174.9 -0.5 66 118-183 134-199 (217)
7 3du1_X ALL3740 protein, HETL; 99.9 9.7E-25 3.3E-29 174.2 2.7 48 136-183 203-250 (257)
8 3pss_A QNR; pentapeptide repea 99.9 4.5E-25 1.5E-29 171.7 -1.4 25 158-182 173-197 (216)
9 3pss_A QNR; pentapeptide repea 99.9 6.5E-24 2.2E-28 165.1 4.4 51 22-75 29-85 (216)
10 2xt2_A ALBG, MCBG-like protein 99.9 2.7E-25 9.3E-30 171.0 -4.3 66 109-174 118-183 (200)
11 2w7z_A EFSQNR, pentapeptide re 99.9 2.9E-25 1E-29 173.1 -5.3 144 25-181 32-175 (214)
12 2bm5_A MFPA, RV3361C, pentapep 99.9 2.2E-23 7.4E-28 159.2 4.4 142 22-181 14-155 (186)
13 2o6w_A Repeat five residue (RF 99.9 8.8E-23 3E-27 151.2 7.5 90 91-182 58-147 (150)
14 2o6w_A Repeat five residue (RF 99.8 1.4E-21 4.7E-26 144.7 7.1 89 92-182 54-142 (150)
15 2f3l_A RFR-domain; beta helix, 99.8 2.3E-21 7.9E-26 148.1 5.5 68 114-181 90-157 (184)
16 2f3l_A RFR-domain; beta helix, 99.8 7.5E-21 2.6E-25 145.2 4.2 82 97-180 80-161 (184)
17 3n90_A P15, thylakoid lumenal 99.8 2E-20 6.7E-25 138.7 4.0 116 26-179 4-120 (152)
18 3nb2_A Secreted effector prote 99.8 1.2E-19 4.1E-24 159.4 7.7 124 20-172 29-155 (613)
19 3nb2_A Secreted effector prote 99.8 2.6E-19 9E-24 157.2 7.1 88 91-181 64-154 (613)
20 3n90_A P15, thylakoid lumenal 99.8 1.3E-19 4.3E-24 134.3 3.8 113 23-168 6-119 (152)
21 2qyu_A Secreted effector prote 99.6 9.7E-16 3.3E-20 133.4 8.0 15 44-58 41-55 (627)
No 1
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.91 E-value=4.3e-26 Score=176.68 Aligned_cols=57 Identities=25% Similarity=0.313 Sum_probs=21.6
Q ss_pred cccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950 125 KENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT 181 (185)
Q Consensus 125 ~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~ 181 (185)
+++|++++|.+|+|.+|+|++++|.+++|.+++|.+++|++++|+++++++++|+++
T Consensus 134 ~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga 190 (201)
T 2j8k_A 134 HANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGT 190 (201)
T ss_dssp TCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTS
T ss_pred CCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcC
Confidence 333333333333333333333333333333333333333333333333334444333
No 2
>2j8k_A NP275-NP276; pentapeptide repeat protein, PRP, right handed quadrilateral beta helix, RHQBH, toxin; HET: MES; 1.5A {Nostoc punctiforme} SCOP: b.80.8.1 PDB: 2j8i_A
Probab=99.91 E-value=3.3e-26 Score=177.29 Aligned_cols=74 Identities=27% Similarity=0.329 Sum_probs=34.9
Q ss_pred ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT 182 (185)
Q Consensus 109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~ 182 (185)
.+++|.+++|++++|.+++|++++|.+|+|++|+|.+++|.+++|++++|.+++|++++|++++|+++.+.+..
T Consensus 123 ~~a~l~~a~l~~a~l~~a~l~~a~l~~a~L~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~~~ 196 (201)
T 2j8k_A 123 KAANLEQAILSHANIREADLSEANLEAADLSGADLAIADLHQANLHQAALERANLTGANLEDANLEGTILEGGN 196 (201)
T ss_dssp TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTSTTTTC-
T ss_pred ccccccCCEEeCCEeeecCcCcCCCCCCCCCCCCcCCCEeCCCCcCCCCCCCCCCCCCCcCCCEECcCCCCCCc
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444443
No 3
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.91 E-value=3.8e-27 Score=183.79 Aligned_cols=157 Identities=6% Similarity=-0.020 Sum_probs=110.7
Q ss_pred CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950 20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA 99 (185)
Q Consensus 20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
++..++++++|+++.|.+|+|++++|++++|.++.|.+|+ +..+.|.++.+.++.|..+.+. .+.|.++++.++
T Consensus 42 l~~~~l~~~~l~~~~f~~~~~~~~~~~~a~l~~~~f~~~~---l~~~~f~~a~l~~~~f~~~~l~---~a~f~~a~l~~~ 115 (214)
T 2w7z_A 42 LPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACD---FSNVEWLSGSFHRVTFLRCNLT---GTNFADSYLXDC 115 (214)
T ss_dssp CCSCEEESCEEEEEEEEEEECTTCEEETCEEEEEEEESCB---CTTCBCTTCEEEEEEEESCBCT---TCBCTTCEEEEE
T ss_pred eecCcccCCEeccCEEEcCEEeCCccCCCEecCCEEEeeE---CcCCCccCCEEEeeEEeCCeee---CCCcCCCEeeee
Confidence 3445566666666667777777777766666666666666 4455454444444333332211 333555666666
Q ss_pred cccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEee
Q 029950 100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKL 179 (185)
Q Consensus 100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~ 179 (185)
.+.++++ .+++|++++|+++.|.+|+|++++|.+|+|++++|.+++|.+++|.+++|++++|++++|.+++|.+++|+
T Consensus 116 ~f~~~~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~~l~~a~l~~~~~~~a~l~ 193 (214)
T 2w7z_A 116 LFEDCXA--DYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLS 193 (214)
T ss_dssp EEESCBC--TTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTCBCTTSBCSCCBCCGGGCT
T ss_pred EEeCCCC--CCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccCCcccCCcCceEcCHHHcC
Confidence 6666666 77888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred eeecC
Q 029950 180 VTTTN 184 (185)
Q Consensus 180 ~~~~~ 184 (185)
|+++.
T Consensus 194 ga~~~ 198 (214)
T 2w7z_A 194 GLXVT 198 (214)
T ss_dssp TCEEC
T ss_pred CcccC
Confidence 87664
No 4
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.91 E-value=1.1e-26 Score=178.76 Aligned_cols=172 Identities=14% Similarity=0.089 Sum_probs=113.8
Q ss_pred cCCcccccceeeccC-CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhh
Q 029950 5 SISPLSIKSLNFCSS-SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVAS 83 (185)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~ 83 (185)
.+.+..+.+..|... ++...+.++.|++|.|.+|+|++++|+++.|.+|.|.+|+ +..+.|.++.+.++.+..+.+
T Consensus 5 ~l~~~~~~~~~f~~~~l~~~~l~~~~~~~~~f~~~~~~~~~l~~~~~~~~~f~~~~---l~~a~~~~a~l~~~~f~~~~l 81 (200)
T 2xt2_A 5 TLESKDYCGESFVSEDRSGQSLESIRFEDCTFRQCNFTEAELNRCKFRECEFVDCN---LSLISIPQTSFMEVRFVDCKM 81 (200)
T ss_dssp CCCCSEEESCEEESCBCTTCEEESCEEESCEEESCBCTTCEEESCEEEEEEEESCB---CTTCBCTTCEEEEEEEESCBC
T ss_pred CcccchhcCCEeecCccccCccccCEEccCEEEeeeccCCeecCCEEEecEeeecc---cccCccccCeeeeeEEEcCEe
Confidence 344555666666553 3444577777777777777777777777777777777777 555555555544443333221
Q ss_pred ccCCchhhhccc------cccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCce
Q 029950 84 CSSNISALADLN------KYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAV 157 (185)
Q Consensus 84 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~ 157 (185)
. ...+.+++ +.++.+.++.+ .+++|.+++|+++.|.+|+|++++|.+|+|++++|.+++|.+++|.+++
T Consensus 82 ~---~a~f~~a~~~~~~~l~~~~f~~~~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~ 156 (200)
T 2xt2_A 82 L---GVNWTSAQWPSVKMEGALSFERCIL--NDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTK 156 (200)
T ss_dssp T---TCBGGGSCCCSSCCTTSEEEESCBC--TTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCB
T ss_pred c---CCccccCcccccccccceEEEcCcc--cccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCCc
Confidence 1 12233333 44445555556 6677777777777777777777777777777777777777777777777
Q ss_pred eeCcEEcCCccCCCcccCeEeeeeecC
Q 029950 158 AYKANFTGADLSDTLMDRMVKLVTTTN 184 (185)
Q Consensus 158 l~~a~l~~a~l~~a~~~~~~l~~~~~~ 184 (185)
|.+++|++++|.+++++++++++++++
T Consensus 157 l~~a~f~~a~l~~~~~~~~~l~ga~~~ 183 (200)
T 2xt2_A 157 LTGASFIDAVNYHIDIFHNDIKRARFS 183 (200)
T ss_dssp CTTCBCTTCBSCCCCTTSSBCTTCEEC
T ss_pred cccCCcCCCCccccccccccccCcEEC
Confidence 777777777777777777777777654
No 5
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.91 E-value=5.5e-27 Score=179.30 Aligned_cols=149 Identities=14% Similarity=0.144 Sum_probs=85.3
Q ss_pred CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029950 23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR 102 (185)
Q Consensus 23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (185)
.++++++|+++.|.+|+|++++|++++|.+|.|.+|. +..+.|.++.+.+|.+.+ +.+..+++.++.+.
T Consensus 20 ~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~~~~~~---f~~~~l~~a~f~~~~l~~--------~~f~~~~l~~~~f~ 88 (186)
T 2bm5_A 20 EDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCT---FERTTLWHSTFAQCSMLG--------SVFVACRLRPLTLD 88 (186)
T ss_dssp CBCTTCEEESCEEESCBCTTCBCTTCEEESCEEESCE---EESCBCTTCEEEEEECTT--------CEEESCBCCSCEEE
T ss_pred CccCCCEecCCEeCCCCcCCCCCCCCEecCCCcCCcC---cCCceeCCCCcCCCCcCC--------CcccCCeeccCEEe
Confidence 3445555555555555555555555555555554444 333333333322222221 12444444444444
Q ss_pred CcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeee
Q 029950 103 GEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTT 182 (185)
Q Consensus 103 ~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~ 182 (185)
++.+ .+++|.+++|++++|.+|+|++++|.+|+|++++|.+++|.+++|.+++|.+++|++++|.++++.+++|++++
T Consensus 89 ~~~l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~~~~~a~l~ga~ 166 (186)
T 2bm5_A 89 DVDF--TLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTASLVGAR 166 (186)
T ss_dssp EEEC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHHHHHHSBCTTCB
T ss_pred ccCc--CcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeeccccccCeecccC
Confidence 4444 56666666777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred cC
Q 029950 183 TN 184 (185)
Q Consensus 183 ~~ 184 (185)
++
T Consensus 167 ~~ 168 (186)
T 2bm5_A 167 VD 168 (186)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 6
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance, handed quadrilateral beta-helix; 1.80A {Klebsiella pneumoniae} PDB: 2xtw_A 2xtx_A
Probab=99.90 E-value=1.6e-25 Score=174.91 Aligned_cols=66 Identities=21% Similarity=0.187 Sum_probs=26.9
Q ss_pred ecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeeec
Q 029950 118 LRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTT 183 (185)
Q Consensus 118 L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~~ 183 (185)
|++++|.+|+|.+++|.+|+|++++|++++|.+++|.+++|++++|++++|.++++++++|+++.+
T Consensus 134 l~~~~l~~~~~~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~~adl~~a~l~~~~l~~a~l~ga~~ 199 (217)
T 2xty_A 134 LEKCELWENRWIGAQVLGATFSGSDLSGGEFSTFDWEAANFTHCDLTNSELGDLDIRGVDLQGVKL 199 (217)
T ss_dssp CTTCBCCSCBCTTCBCTTCBCTTCBCTTCBCTTCCTTSSBCTTCBCTTCBCTTCCTTTSCCTTCEE
T ss_pred cccCcccCCCcCCCeeCcCEECCCccCCCCCCCCCcCCCcCCCCcCCCCCcCCCcCCCCccCcCEe
Confidence 333333333333333333333333333334444444444444444444444444444444444443
No 7
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five residue fold, pentape repeat protein, structural protein; 2.00A {Nostoc SP}
Probab=99.89 E-value=9.7e-25 Score=174.17 Aligned_cols=48 Identities=29% Similarity=0.400 Sum_probs=26.4
Q ss_pred ceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeeeec
Q 029950 136 ADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVTTT 183 (185)
Q Consensus 136 a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~~~ 183 (185)
++|++++|.+++|++|+|++++|.+++|++++|.+++|++++|+|+++
T Consensus 203 adl~~a~l~~a~l~~a~l~~a~l~~a~l~~a~l~ga~l~~a~l~ga~~ 250 (257)
T 3du1_X 203 ADLSGASLQGADLSYANLESAILRKANLQGADLTGAILKDAELKGAIM 250 (257)
T ss_dssp CBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC
T ss_pred cccCCCccCCCcCCCCcCCCCcCCCCCCCCCCccCCEeCCCcccccCC
Confidence 444455555555555555555555555555555555555555555544
No 8
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.89 E-value=4.5e-25 Score=171.69 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=9.6
Q ss_pred eeCcEEcCCccCCCcccCeEeeeee
Q 029950 158 AYKANFTGADLSDTLMDRMVKLVTT 182 (185)
Q Consensus 158 l~~a~l~~a~l~~a~~~~~~l~~~~ 182 (185)
|++++|++++|.++++.+++|++++
T Consensus 173 l~~a~l~~a~l~~~~l~~~~l~ga~ 197 (216)
T 3pss_A 173 LQGCDLRQCDLPGLDLRRVNLDGVQ 197 (216)
T ss_dssp CTTCBCTTCCCTTCCTTTSCCTTCE
T ss_pred cCCCCccCCEecCcccccCcccCcE
Confidence 3333333333333333344444443
No 9
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB: 3psz_A
Probab=99.88 E-value=6.5e-24 Score=165.10 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=28.6
Q ss_pred CCCcccccccCceecceecc------CCCCCCcccCCcccccCCCCccccccHHHHHHHH
Q 029950 22 KGPYQLHALSKPLWVACQIS------SKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTA 75 (185)
Q Consensus 22 ~~~~~~a~l~~~~f~~c~~~------~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~ 75 (185)
..+|++++|.++.|.+|.|. +++|++++|.++.|.+|+ +..+.|.++.+.+
T Consensus 29 ~~~f~~a~l~~~~f~~~~f~~~~~l~~~~f~~a~l~~~~f~~~~---l~~~~f~~a~l~~ 85 (216)
T 3pss_A 29 GCNFSWLDLAECRFVDCSFYDRESEQSCLLQGCDLREASFLRCD---LTMADCSRSQCLG 85 (216)
T ss_dssp SCBCTTCBCTTCEEESCBCCBTTTTBCCBCTTCBCTTCEEESCB---CTTCBCTTCBCTT
T ss_pred ccccccCcccCCEEEEeEeccCCccCCcEeCCCCccCCCcCccC---CCCCccCCCCccc
Confidence 33455555555555555554 666666666666666666 4555454444433
No 10
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=99.88 E-value=2.7e-25 Score=171.01 Aligned_cols=66 Identities=21% Similarity=0.391 Sum_probs=26.3
Q ss_pred ccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCccc
Q 029950 109 SAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMD 174 (185)
Q Consensus 109 ~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~ 174 (185)
.+++|.+++|++++|.+++|++++|.+|+|.+++|.+++|.+++|+++++.+++|++++|+++.+.
T Consensus 118 ~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~~~~~~~~l~ga~~~ 183 (200)
T 2xt2_A 118 AGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHIDIFHNDIKRARFS 183 (200)
T ss_dssp TTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSCBCTTCBCTTCBSCCCCTTSSBCTTCEEC
T ss_pred CCCEecCCEeecccCCCCccccCCccCcccCCCCccCCccccCCcCCCCccccccccccccCcEEC
Confidence 333334444444444444444444444444444444444444444444333333333333333333
No 11
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase inhibitor, cyclic pentylation, chemic modification; HET: LP6; 1.60A {Enterococcus faecalis}
Probab=99.88 E-value=2.9e-25 Score=173.08 Aligned_cols=144 Identities=10% Similarity=-0.050 Sum_probs=83.5
Q ss_pred cccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCc
Q 029950 25 YQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGE 104 (185)
Q Consensus 25 ~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (185)
+.++.|+++.|.+++|++++|+++.|.+|.|.+|+ +..+.|.++.+.+|.+... .+.++++.++.|.++
T Consensus 32 l~~~~~~~~~l~~~~l~~~~l~~~~f~~~~~~~~~---~~~a~l~~~~f~~~~l~~~--------~f~~a~l~~~~f~~~ 100 (214)
T 2w7z_A 32 LENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQ---FASFDCSNVRFEACDFSNV--------EWLSGSFHRVTFLRC 100 (214)
T ss_dssp EESSEEEEEECCSCEEESCEEEEEEEEEEECTTCE---EETCEEEEEEEESCBCTTC--------BCTTCEEEEEEEESC
T ss_pred ccCCEEecceeecCcccCCEeccCEEEcCEEeCCc---cCCCEecCCEEEeeECcCC--------CccCCEEEeeEEeCC
Confidence 55555555555555555555555555555555555 4444444444444444432 255666666666666
Q ss_pred ccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950 105 FGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT 181 (185)
Q Consensus 105 ~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~ 181 (185)
++ .+++|++++|.++.|.+|+|.+++|.+++|.++.|.+++|.+++|.+++|++++|.+++|++++|.+++|+++
T Consensus 101 ~l--~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~L~~a~f~~~~L~~a~f~~a~l~~~ 175 (214)
T 2w7z_A 101 NL--TGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGL 175 (214)
T ss_dssp BC--TTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCEEEEEEEESCBCTTCBCTTCCCTTC
T ss_pred ee--eCCCcCCCEeeeeEEeCCCCCCCcCCcCccCceEEEecccCCCCccCCEEEEEEEEecccccCEecCCeeccC
Confidence 66 6677777777777777777666666666666666666666666555555555555555555555555555444
No 12
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=99.87 E-value=2.2e-23 Score=159.24 Aligned_cols=142 Identities=16% Similarity=0.069 Sum_probs=66.2
Q ss_pred CCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccc
Q 029950 22 KGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAET 101 (185)
Q Consensus 22 ~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (185)
...|.+++|+++.|.++.|.+++|++++|.++.|.+|+ +..+.|.++.+ . .+.+..+++.++.|
T Consensus 14 ~~~f~~~~l~~~~l~~~~f~~~~f~~~~l~~a~l~~~~---~~~~~f~~~~l-----~--------~a~f~~~~l~~~~f 77 (186)
T 2bm5_A 14 GRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSA---FRNCTFERTTL-----W--------HSTFAQCSMLGSVF 77 (186)
T ss_dssp SCBCTTCBCTTCEEESCEEESCBCTTCBCTTCEEESCE---EESCEEESCBC-----T--------TCEEEEEECTTCEE
T ss_pred CCCcccCccCCCEecCCEeCCCCcCCCCCCCCEecCCC---cCCcCcCCcee-----C--------CCCcCCCCcCCCcc
Confidence 33455555555555555555555555555555555555 23222222111 1 11133333333334
Q ss_pred cCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950 102 RGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT 181 (185)
Q Consensus 102 ~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~ 181 (185)
.++++ .+++|.+++|.+++|.+++|++++|.+|+|.+++|.+++|.+++|++++|.+++|.+++|++++|+++.+.++
T Consensus 78 ~~~~l--~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~L~~a~f~~~~l~~a~f~~a~L~~adl~~a~l~~~ 155 (186)
T 2bm5_A 78 VACRL--RPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPV 155 (186)
T ss_dssp ESCBC--CSCEEEEEECTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCHH
T ss_pred cCCee--ccCEEeccCcCcCccCCCccCCCeeccCEEecCccCCCccCCCCcCCCccCCCEecCCccCCcccCCCEeecc
Confidence 33333 4444444445555555555555555555555555555555555555555555555555555555444444433
No 13
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.87 E-value=8.8e-23 Score=151.15 Aligned_cols=90 Identities=21% Similarity=0.199 Sum_probs=59.9
Q ss_pred hhccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCC
Q 029950 91 LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSD 170 (185)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~ 170 (185)
+.++++.++.+.++++ .+++|.+++|.+++|.+++|++++|.+|+|++++|.+++|.+++|.+++|.+++|.+++|++
T Consensus 58 l~~a~l~~a~l~~a~l--~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a~l~~ 135 (150)
T 2o6w_A 58 LTRANLSNANLYQSDL--SSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGVNLEE 135 (150)
T ss_dssp CTTCBCTTCBCTTCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTT
T ss_pred eCCCCCCCCCccCCCC--CCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCCCCCC
Confidence 4444455555555555 56666666777777777777777777777777777777777777777777777777777777
Q ss_pred CcccCeEeeeee
Q 029950 171 TLMDRMVKLVTT 182 (185)
Q Consensus 171 a~~~~~~l~~~~ 182 (185)
++|+++.+++.+
T Consensus 136 a~l~ga~~~~~t 147 (150)
T 2o6w_A 136 THLKGIETDKNT 147 (150)
T ss_dssp CBCTTCBCCTTC
T ss_pred CCcCCCEecCCc
Confidence 777776666554
No 14
>2o6w_A Repeat five residue (RFR) protein or pentapeptide repeat protein; beta helix, unknown function; 2.40A {Cyanothece}
Probab=99.85 E-value=1.4e-21 Score=144.70 Aligned_cols=89 Identities=18% Similarity=0.181 Sum_probs=38.1
Q ss_pred hccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCC
Q 029950 92 ADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDT 171 (185)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a 171 (185)
.++++.++++.++.+ .+++|.+++|++++|.+++|.+++|.+++|.+|+|++++|.+|+|.+++|.+++|++++|.++
T Consensus 54 ~~~~l~~a~l~~a~l--~~a~l~~a~~~~a~l~~a~l~~a~l~~a~~~~a~L~~a~l~~a~L~~a~~~~a~L~~a~l~~a 131 (150)
T 2o6w_A 54 KPVDLTRANLSNANL--YQSDLSSIILENAILVETNLSETDLENAILIGANLQGANLENANLQGANLENANLRGAILTGV 131 (150)
T ss_dssp CCCBCTTCBCTTCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTC
T ss_pred CCCEeCCCCCCCCCc--cCCCCCCCCcCCCCCCCCEecCCCCCCCEecCCCCCCCCCCCceecccEECCCCcCcCCccCC
Confidence 334444444433333 334444444444444444444444444444444444444444444444444444444444444
Q ss_pred cccCeEeeeee
Q 029950 172 LMDRMVKLVTT 182 (185)
Q Consensus 172 ~~~~~~l~~~~ 182 (185)
++++++|+++.
T Consensus 132 ~l~~a~l~ga~ 142 (150)
T 2o6w_A 132 NLEETHLKGIE 142 (150)
T ss_dssp BCTTCBCTTCB
T ss_pred CCCCCCcCCCE
Confidence 44444444443
No 15
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.83 E-value=2.3e-21 Score=148.10 Aligned_cols=68 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred ccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCeEeeee
Q 029950 114 GSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRMVKLVT 181 (185)
Q Consensus 114 ~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~~l~~~ 181 (185)
.+++|.+++|.+++|++++|.+++|.+|+|.+++|.+|+|.+++|.+++|.+++|++++|+++.|+++
T Consensus 90 ~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~ 157 (184)
T 2f3l_A 90 RGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVY 157 (184)
T ss_dssp TTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHH
T ss_pred cEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcC
Confidence 33333333333333333333333334444444444444444444444444444444555554444444
No 16
>2f3l_A RFR-domain; beta helix, unknown function; 2.11A {Cyanothece SP} SCOP: b.80.8.1 PDB: 2g0y_A
Probab=99.81 E-value=7.5e-21 Score=145.24 Aligned_cols=82 Identities=16% Similarity=0.103 Sum_probs=51.3
Q ss_pred ccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeCceeeCcEEcCCccCCCcccCe
Q 029950 97 YEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEKAVAYKANFTGADLSDTLMDRM 176 (185)
Q Consensus 97 ~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~a~l~~a~l~~a~l~~a~~~~~ 176 (185)
.+++|.++++ .+++|.+++|++++|.+++|+++.|.+++|++|+|++++|.+|+|.+++|.+++|++++|++++++++
T Consensus 80 ~~a~f~~a~L--~~a~f~~a~l~~a~l~~a~L~~a~l~~a~f~~a~L~~a~l~~a~l~~a~f~~a~L~gadf~~a~l~~~ 157 (184)
T 2f3l_A 80 TDSNFSEADL--RGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMRTKFDDAKITGADFSLAVLDVY 157 (184)
T ss_dssp TTCBCTTCBC--TTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEECHH
T ss_pred ccCCcCCCCC--cEeEEeeeccCCCeEEEeecccceecCcEeCccEeCCCEeeCCEECCCEEeCCEecCCEecCCCCCcC
Confidence 3344444444 55666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred Eeee
Q 029950 177 VKLV 180 (185)
Q Consensus 177 ~l~~ 180 (185)
++++
T Consensus 158 ~l~~ 161 (184)
T 2f3l_A 158 EVDK 161 (184)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6554
No 17
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.80 E-value=2e-20 Score=138.69 Aligned_cols=116 Identities=20% Similarity=0.190 Sum_probs=65.4
Q ss_pred ccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccccccCcc
Q 029950 26 QLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETRGEF 105 (185)
Q Consensus 26 ~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (185)
.++.|.++.|.+++|.+++|++++|.++.|.+|++ .++.|.+++
T Consensus 4 ~g~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l------------------------------------~~a~f~~a~ 47 (152)
T 3n90_A 4 GGGPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSIL------------------------------------RQANFKGAK 47 (152)
T ss_dssp GGCCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBC------------------------------------TTCBCTTCB
T ss_pred CCCcccCceEcCCCccCCcCCCCCcCcCccCCCee------------------------------------CCCEeCCCC
Confidence 45555666666666666666666666666666662 222333333
Q ss_pred cccccceeccceecccccccccccCceeccceecCeeecCceecCceeeC-ceeeCcEEcCCccCCCcccCeEee
Q 029950 106 GIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK-AVAYKANFTGADLSDTLMDRMVKL 179 (185)
Q Consensus 106 ~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~-a~l~~a~l~~a~l~~a~~~~~~l~ 179 (185)
+ .+++|.+++|++++|.+|+|++++|.+|+|++++|.+++|.+++|.+ ++|.+++|++++|++++|++++++
T Consensus 48 l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l~ 120 (152)
T 3n90_A 48 L--LGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQRV 120 (152)
T ss_dssp C--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHHH
T ss_pred C--CCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEecCCEecCCccCcHHHH
Confidence 3 44555556666666666666666666666666666666666666652 555555555555555555554443
No 18
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.79 E-value=1.2e-19 Score=159.41 Aligned_cols=124 Identities=20% Similarity=0.139 Sum_probs=58.2
Q ss_pred CCCCCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhccccccc
Q 029950 20 SSKGPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEA 99 (185)
Q Consensus 20 ~~~~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (185)
+.+.+|++++|.++.|.+|+|.+++|++|.|.+|.|.+|++ ..+.+.++++.++
T Consensus 29 f~~~dfsgadLsgadfsg~dLs~a~fsgA~L~~a~f~~anL--------------------------sgA~L~gA~L~~a 82 (613)
T 3nb2_A 29 AEELNYSGCDLSGLSLVGLNLSSVNFSGAVLDDTDLRMSDL--------------------------SQAVLENCSFKNS 82 (613)
T ss_dssp TTTTBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBC--------------------------TTCBCTTCEEEEE
T ss_pred cCCCeeCCCEecCCCcCCCcCCCCcccCCeeeEEEecCCEe--------------------------CCCCCCCCEeCCC
Confidence 34444555555555555555555555555555555555552 1222334444444
Q ss_pred cccCcccccccceeccceecccccccccccCceeccceecCeeecC--ceecCceeeCcee-eCcEEcCCccCCCc
Q 029950 100 ETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG--SKFNGAYLEKAVA-YKANFTGADLSDTL 172 (185)
Q Consensus 100 ~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~--a~L~~a~f~~a~l-~~a~l~~a~l~~a~ 172 (185)
.+.++++ .+++|++++|+ +.|.+|+|++|+|.+|+|++|+|.+ |+|.+|+|++|++ .+++|++|+|.+++
T Consensus 83 ~L~~anL--~~AnL~~A~L~-a~L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~Ll~gAdLsgA~L~~a~ 155 (613)
T 3nb2_A 83 ILNECNF--CYANLSNCIIR-ALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAIIIPGMVLSGAILGDVK 155 (613)
T ss_dssp ECTTCBC--TTCBCTTCEEE-EECTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEECTTCCCTTCBCCCCS
T ss_pred ccCCCcc--CCCccccCccc-ceeccCEecCCeecccEEeccEEecCccceeccccCCCeeCCCceecCCCccCCe
Confidence 4444444 34444444422 2244444444444444444444443 4444444444444 44444444444444
No 19
>3nb2_A Secreted effector protein; pentapeptide, HECT domain, HECT E ubiquitin ligase, ligase; HET: MES; 2.10A {Escherichia coli} PDB: 3naw_A* 3sqv_A
Probab=99.77 E-value=2.6e-19 Score=157.23 Aligned_cols=88 Identities=15% Similarity=0.141 Sum_probs=36.2
Q ss_pred hhccccccccccCcccccccceeccceecccccccccccCceeccceecCeeecCceecCceeeC--ceeeCcEEcCCcc
Q 029950 91 LADLNKYEAETRGEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSGSKFNGAYLEK--AVAYKANFTGADL 168 (185)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~a~L~~a~f~~--a~l~~a~l~~a~l 168 (185)
+.++++.++.+.++.+ .+++|.+|+|.+++|.+++++ +.|.+|+|++|+|.+++|.+|+|.+ ++|.+++|++|+|
T Consensus 64 f~~anLsgA~L~gA~L--~~a~L~~anL~~AnL~~A~L~-a~L~~A~LsgAdL~~AdL~gA~f~~~~adL~gAdL~gA~L 140 (613)
T 3nb2_A 64 LRMSDLSQAVLENCSF--KNSILNECNFCYANLSNCIIR-ALFENSNFSNSNLKNASFKGSSYIQYPPILNEADLTGAII 140 (613)
T ss_dssp CTTCBCTTCBCTTCEE--EEEECTTCBCTTCBCTTCEEE-EECTTCBCTTCBCTTCBCTTCBCSSSCCBCTTCBCTTCEE
T ss_pred ecCCEeCCCCCCCCEe--CCCccCCCccCCCccccCccc-ceeccCEecCCeecccEEeccEEecCccceeccccCCCee
Confidence 3344444444443333 334444444444444444411 1144444444444444444444443 4444444444444
Q ss_pred -CCCcccCeEeeee
Q 029950 169 -SDTLMDRMVKLVT 181 (185)
Q Consensus 169 -~~a~~~~~~l~~~ 181 (185)
.+++|++++|+++
T Consensus 141 l~gAdLsgA~L~~a 154 (613)
T 3nb2_A 141 IPGMVLSGAILGDV 154 (613)
T ss_dssp CTTCCCTTCBCCCC
T ss_pred CCCceecCCCccCC
Confidence 4444444444444
No 20
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=99.77 E-value=1.3e-19 Score=134.32 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=57.2
Q ss_pred CCcccccccCceecceeccCCCCCCcccCCcccccCCCCccccccHHHHHHHHHHHHHHhhccCCchhhhcccccccccc
Q 029950 23 GPYQLHALSKPLWVACQISSKTESDGQFPDCSNNQCAGPYAKLKNWRVFVSTALAAAVVASCSSNISALADLNKYEAETR 102 (185)
Q Consensus 23 ~~~~~a~l~~~~f~~c~~~~~~f~~a~l~~~~F~~c~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (185)
..|.++.|.++.|.+++|++++|.+++|.+|.|.+++ +.++++.++.|.
T Consensus 6 ~~~~~~~~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~-------------------------------f~~a~l~~a~f~ 54 (152)
T 3n90_A 6 GPYGQGVTRGQDLSGKDFSGQTLIRQDFKTSILRQAN-------------------------------FKGAKLLGASFF 54 (152)
T ss_dssp CCCCHHHHTTCBCTTCBCTTCBCTTCBCTTCBCTTCB-------------------------------CTTCBCTTCBCT
T ss_pred CcccCceEcCCCccCCcCCCCCcCcCccCCCeeCCCE-------------------------------eCCCCCCCCCcc
Confidence 3445555555555555555555555555555555555 222233334444
Q ss_pred CcccccccceeccceecccccccccccCceeccceecCeeecC-ceecCceeeCceeeCcEEcCCcc
Q 029950 103 GEFGIGSAAQFGSADLRKAVHVKENFRRANFTSADMRESDFSG-SKFNGAYLEKAVAYKANFTGADL 168 (185)
Q Consensus 103 ~~~~~~~~~~f~~a~L~~~~f~~~~l~~a~f~~a~l~~a~f~~-a~L~~a~f~~a~l~~a~l~~a~l 168 (185)
++++ .+++|++++|++++|.+|+|++++|.+|+|.++.|.+ ++|.+++|.+++|.+++|+++++
T Consensus 55 ~a~l--~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~~~g~~~~~~a~l~~a~~~~a~l~~~~l 119 (152)
T 3n90_A 55 DADL--TGADLSEADLRGADFSLANVTKVNLTNANLEGATMMGNTSFKGSNITGADFTDVPLRDDQR 119 (152)
T ss_dssp TCBC--TTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCCSSCBCTTCBCTTCBCTTCCCCHHHH
T ss_pred ccCc--CCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCEEcCCceECCCEecCCEecCCccCcHHH
Confidence 4444 4455555555555555555555555555555555552 55555555555555554444443
No 21
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P; 2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Probab=99.61 E-value=9.7e-16 Score=133.43 Aligned_cols=15 Identities=13% Similarity=0.198 Sum_probs=6.1
Q ss_pred CCCCcccCCcccccC
Q 029950 44 TESDGQFPDCSNNQC 58 (185)
Q Consensus 44 ~f~~a~l~~~~F~~c 58 (185)
+|++++|.++.|.++
T Consensus 41 DFsg~DLsgadLs~a 55 (627)
T 2qyu_A 41 DFSNADFRNITFSKI 55 (627)
T ss_dssp BCTTCBCTTCBGGGT
T ss_pred cCCCCCCCCCccccc
Confidence 344444444444433
Done!