Query 029951
Match_columns 185
No_of_seqs 235 out of 1191
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00134 petF ferredoxin; Vali 99.9 7.1E-25 1.5E-29 163.3 11.9 99 60-158 1-99 (99)
2 TIGR02008 fdx_plant ferredoxin 99.9 7.1E-24 1.5E-28 157.1 11.4 96 62-158 2-97 (97)
3 PLN03136 Ferredoxin; Provision 99.9 1E-23 2.2E-28 168.0 12.5 109 47-157 34-147 (148)
4 PTZ00038 ferredoxin; Provision 99.9 1.3E-22 2.8E-27 167.4 12.6 98 60-159 93-190 (191)
5 PRK10713 2Fe-2S ferredoxin Yfa 99.9 1.3E-21 2.8E-26 141.6 9.8 83 62-151 1-84 (84)
6 PRK07609 CDP-6-deoxy-delta-3,4 99.8 7.2E-20 1.6E-24 160.3 12.0 116 63-182 3-124 (339)
7 PRK11872 antC anthranilate dio 99.8 1.8E-18 3.8E-23 152.5 12.1 93 63-156 3-97 (340)
8 cd00207 fer2 2Fe-2S iron-sulfu 99.8 2.4E-18 5.1E-23 121.8 9.4 78 73-150 7-84 (84)
9 PRK05713 hypothetical protein; 99.8 2.5E-18 5.4E-23 149.7 11.0 104 76-181 9-112 (312)
10 COG0633 Fdx Ferredoxin [Energy 99.8 1.6E-18 3.4E-23 129.9 7.8 79 76-154 15-98 (102)
11 PRK10684 HCP oxidoreductase, N 99.8 4.3E-18 9.4E-23 149.2 10.7 85 62-150 248-332 (332)
12 TIGR02160 PA_CoA_Oxy5 phenylac 99.8 5.9E-18 1.3E-22 148.9 11.5 89 61-151 261-351 (352)
13 TIGR01941 nqrF NADH:ubiquinone 99.8 5.6E-18 1.2E-22 152.6 11.4 93 60-153 27-122 (405)
14 TIGR02007 fdx_isc ferredoxin, 99.7 1.4E-17 3.1E-22 126.0 9.3 81 76-156 16-104 (110)
15 PLN02593 adrenodoxin-like ferr 99.7 1.2E-17 2.5E-22 128.2 8.4 92 64-156 2-105 (117)
16 PTZ00490 Ferredoxin superfamil 99.7 5.6E-17 1.2E-21 128.6 9.2 95 60-155 33-139 (143)
17 PF00111 Fer2: 2Fe-2S iron-sul 99.7 2.8E-17 6.1E-22 115.6 6.2 72 72-144 4-78 (78)
18 PRK05464 Na(+)-translocating N 99.7 1.6E-16 3.5E-21 143.3 11.1 78 76-153 46-126 (409)
19 COG2871 NqrF Na+-transporting 99.5 2.1E-14 4.6E-19 125.5 6.2 91 61-154 35-128 (410)
20 COG3894 Uncharacterized metal- 99.5 4E-14 8.7E-19 130.5 5.8 108 63-176 2-116 (614)
21 PRK07569 bidirectional hydroge 99.1 4.2E-10 9.1E-15 95.1 7.5 73 60-154 1-79 (234)
22 KOG3309 Ferredoxin [Energy pro 99.0 1.1E-09 2.3E-14 87.6 7.8 94 62-156 43-147 (159)
23 PF13510 Fer2_4: 2Fe-2S iron-s 99.0 9.6E-10 2.1E-14 79.3 5.0 68 64-152 3-80 (82)
24 PRK08166 NADH dehydrogenase su 98.8 6.9E-09 1.5E-13 101.6 7.3 75 63-154 2-82 (847)
25 PTZ00305 NADH:ubiquinone oxido 98.6 1.8E-07 3.9E-12 82.0 7.3 77 56-154 62-145 (297)
26 PRK06259 succinate dehydrogena 98.6 1.7E-07 3.8E-12 86.3 7.5 60 76-153 23-88 (486)
27 PRK12814 putative NADPH-depend 98.3 1.1E-06 2.5E-11 84.0 7.1 73 60-154 1-79 (652)
28 PRK09130 NADH dehydrogenase su 98.2 3.6E-06 7.9E-11 81.3 7.1 70 63-153 2-77 (687)
29 COG1034 NuoG NADH dehydrogenas 98.1 4.5E-06 9.7E-11 80.7 6.8 70 62-153 1-76 (693)
30 TIGR01973 NuoG NADH-quinone ox 98.1 5.2E-06 1.1E-10 78.7 6.3 65 72-153 4-74 (603)
31 PRK08493 NADH dehydrogenase su 98.1 7.9E-06 1.7E-10 80.5 7.3 67 63-153 2-74 (819)
32 PF13085 Fer2_3: 2Fe-2S iron-s 98.1 4.9E-06 1.1E-10 63.5 4.3 52 76-145 21-78 (110)
33 PRK09129 NADH dehydrogenase su 98.0 1.3E-05 2.7E-10 78.1 6.7 70 63-154 2-77 (776)
34 PRK11433 aldehyde oxidoreducta 98.0 2E-05 4.4E-10 66.6 6.9 53 62-117 49-103 (217)
35 PRK07860 NADH dehydrogenase su 98.0 1.8E-05 3.9E-10 77.6 7.4 69 62-152 4-78 (797)
36 PRK08640 sdhB succinate dehydr 97.9 7.1E-06 1.5E-10 70.5 3.2 42 75-117 24-78 (249)
37 PRK13552 frdB fumarate reducta 97.9 8.4E-06 1.8E-10 69.6 3.0 42 75-117 25-72 (239)
38 PRK12577 succinate dehydrogena 97.8 3E-05 6.4E-10 69.0 5.9 41 76-117 21-67 (329)
39 PRK09908 xanthine dehydrogenas 97.8 6.3E-05 1.4E-09 60.9 6.8 52 63-117 7-59 (159)
40 PRK12386 fumarate reductase ir 97.8 2.6E-05 5.6E-10 67.2 4.4 42 75-117 21-68 (251)
41 PRK07570 succinate dehydrogena 97.7 2E-05 4.4E-10 67.8 2.8 42 76-118 22-74 (250)
42 PRK12385 fumarate reductase ir 97.6 8.1E-05 1.8E-09 63.7 4.7 40 76-116 27-72 (244)
43 PLN00129 succinate dehydrogena 97.6 6.2E-05 1.3E-09 65.8 3.5 51 76-144 62-121 (276)
44 PRK12576 succinate dehydrogena 97.5 0.00015 3.3E-09 63.1 5.6 41 76-117 27-73 (279)
45 PRK12575 succinate dehydrogena 97.5 7.4E-05 1.6E-09 63.7 3.4 58 76-151 23-91 (235)
46 TIGR03193 4hydroxCoAred 4-hydr 97.5 0.00029 6.3E-09 56.4 6.1 45 72-117 7-53 (148)
47 COG0479 FrdB Succinate dehydro 97.4 0.00011 2.4E-09 62.8 2.9 41 76-117 22-68 (234)
48 PRK05950 sdhB succinate dehydr 97.4 0.00019 4.1E-09 60.7 4.1 42 76-118 20-68 (232)
49 TIGR00384 dhsB succinate dehyd 97.3 0.00023 5E-09 59.6 3.5 41 76-117 17-63 (220)
50 TIGR03198 pucE xanthine dehydr 97.1 0.0012 2.7E-08 52.9 6.2 45 72-117 9-55 (151)
51 COG2080 CoxS Aerobic-type carb 97.1 0.0018 3.9E-08 52.3 6.7 46 72-118 9-56 (156)
52 COG3383 Uncharacterized anaero 97.0 0.0025 5.4E-08 62.5 7.6 49 62-117 5-59 (978)
53 TIGR02963 xanthine_xdhA xanthi 96.3 0.0066 1.4E-07 56.5 5.2 42 72-113 6-50 (467)
54 PRK09800 putative hypoxanthine 96.1 0.012 2.5E-07 59.4 6.5 50 65-117 3-54 (956)
55 TIGR03311 Se_dep_Molyb_1 selen 95.7 0.019 4.1E-07 57.2 5.7 43 72-117 6-50 (848)
56 TIGR03313 Se_sel_red_Mo probab 95.3 0.025 5.3E-07 57.1 5.3 45 72-117 4-50 (951)
57 PLN00192 aldehyde oxidase 94.9 0.056 1.2E-06 56.4 6.4 47 65-113 6-55 (1344)
58 TIGR02969 mam_aldehyde_ox alde 94.2 0.076 1.6E-06 55.4 5.4 43 72-114 8-53 (1330)
59 KOG2282 NADH-ubiquinone oxidor 93.0 0.14 3.1E-06 48.7 4.6 42 72-115 38-85 (708)
60 TIGR01372 soxA sarcosine oxida 90.8 0.94 2E-05 45.8 7.9 73 64-153 12-95 (985)
61 KOG3049 Succinate dehydrogenas 89.1 0.4 8.6E-06 41.2 3.2 32 82-113 75-112 (288)
62 COG4630 XdhA Xanthine dehydrog 81.1 3.9 8.4E-05 38.0 5.7 50 62-113 6-58 (493)
63 PLN02906 xanthine dehydrogenas 80.2 1.7 3.7E-05 45.5 3.6 32 83-114 1-33 (1319)
64 PRK00054 dihydroorotate dehydr 78.0 1.5 3.3E-05 36.8 2.0 31 85-115 195-231 (250)
65 cd06219 DHOD_e_trans_like1 FAD 74.8 2.8 6.1E-05 35.1 2.9 29 85-113 194-228 (248)
66 PRK08345 cytochrome-c3 hydroge 74.7 1.9 4.1E-05 37.2 1.8 33 84-116 225-266 (289)
67 cd06218 DHOD_e_trans FAD/NAD b 71.8 4.2 9.1E-05 34.1 3.2 31 85-115 194-230 (246)
68 PF10418 DHODB_Fe-S_bind: Iron 71.8 2.3 5E-05 26.6 1.2 18 99-116 4-21 (40)
69 cd06220 DHOD_e_trans_like2 FAD 71.1 3.2 7E-05 34.3 2.3 30 85-114 181-216 (233)
70 cd06221 sulfite_reductase_like 65.6 4.3 9.3E-05 34.2 2.0 28 85-112 204-240 (253)
71 PRK06222 ferredoxin-NADP(+) re 65.0 5.6 0.00012 34.1 2.6 28 86-113 196-229 (281)
72 PRK05659 sulfur carrier protei 64.9 13 0.00029 24.7 4.0 28 64-97 2-29 (66)
73 PRK01777 hypothetical protein; 64.1 22 0.00048 26.2 5.4 23 76-98 19-41 (95)
74 PRK05802 hypothetical protein; 61.2 5.8 0.00012 35.1 2.1 28 86-113 269-304 (320)
75 PRK08221 anaerobic sulfite red 59.8 5.7 0.00012 33.8 1.7 28 85-112 206-242 (263)
76 PRK12778 putative bifunctional 55.3 9.6 0.00021 37.3 2.7 28 86-113 196-229 (752)
77 PRK07440 hypothetical protein; 53.8 38 0.00082 23.3 4.8 30 62-97 4-33 (70)
78 PRK08364 sulfur carrier protei 53.8 29 0.00062 23.7 4.2 36 60-97 2-37 (70)
79 TIGR02911 sulfite_red_B sulfit 53.1 5.5 0.00012 33.8 0.6 27 86-112 205-240 (261)
80 KOG0430 Xanthine dehydrogenase 49.9 27 0.00059 36.6 4.9 35 80-114 17-53 (1257)
81 PRK05863 sulfur carrier protei 49.9 40 0.00088 22.6 4.4 28 64-97 2-29 (65)
82 cd06192 DHOD_e_trans_like FAD/ 48.8 10 0.00022 31.4 1.5 16 98-113 213-228 (243)
83 cd01760 RBD Ubiquitin-like dom 48.3 32 0.00069 24.1 3.7 22 72-93 8-29 (72)
84 PRK06083 sulfur carrier protei 47.1 47 0.001 23.9 4.6 32 59-96 15-46 (84)
85 PRK06944 sulfur carrier protei 41.6 52 0.0011 21.6 3.9 27 64-96 2-28 (65)
86 PF03990 DUF348: Domain of unk 40.7 81 0.0018 19.4 4.4 31 65-98 2-32 (43)
87 PF03658 Ub-RnfH: RnfH family 40.1 30 0.00065 25.2 2.6 22 75-96 15-36 (84)
88 PRK12779 putative bifunctional 39.1 26 0.00055 35.8 2.9 29 85-113 861-895 (944)
89 PRK08053 sulfur carrier protei 35.4 92 0.002 20.8 4.4 28 64-97 2-29 (66)
90 COG2104 ThiS Sulfur transfer p 34.1 1E+02 0.0022 21.3 4.5 38 72-121 8-45 (68)
91 smart00455 RBD Raf-like Ras-bi 32.5 98 0.0021 21.3 4.2 22 72-93 8-29 (70)
92 PRK06567 putative bifunctional 30.3 23 0.00049 36.6 0.9 34 97-147 970-1004(1028)
93 cd01813 UBP_N UBP ubiquitin pr 27.1 1.2E+02 0.0027 20.8 3.9 24 64-89 2-25 (74)
94 PF02196 RBD: Raf-like Ras-bin 26.1 1.8E+02 0.0038 20.0 4.6 22 72-93 9-30 (71)
95 cd01817 RGS12_RBD Ubiquitin do 25.2 89 0.0019 22.2 2.9 37 72-117 8-48 (73)
96 PF14451 Ub-Mut7C: Mut7-C ubiq 24.9 1.2E+02 0.0026 21.6 3.7 24 75-98 24-47 (81)
97 PRK12775 putative trifunctiona 24.7 56 0.0012 33.6 2.5 28 86-113 196-229 (1006)
98 cd01791 Ubl5 UBL5 ubiquitin-li 23.6 1.7E+02 0.0037 20.1 4.1 27 62-89 1-27 (73)
99 PRK07696 sulfur carrier protei 22.7 1.9E+02 0.0042 19.5 4.2 28 64-97 2-30 (67)
100 PF10531 SLBB: SLBB domain; I 22.4 67 0.0014 20.9 1.8 24 76-99 12-35 (59)
101 TIGR01683 thiS thiamine biosyn 21.9 1.4E+02 0.003 19.7 3.3 23 72-96 4-26 (64)
102 PRK06437 hypothetical protein; 21.2 1.7E+02 0.0036 19.8 3.6 24 73-96 10-33 (67)
103 COG1018 Hmp Flavodoxin reducta 20.9 77 0.0017 27.4 2.3 19 71-91 248-266 (266)
104 PF02824 TGS: TGS domain; Int 20.6 1.6E+02 0.0034 19.4 3.3 36 72-117 7-42 (60)
105 cd00565 ThiS ThiaminS ubiquiti 20.5 2E+02 0.0044 18.9 3.9 23 72-96 5-27 (65)
No 1
>CHL00134 petF ferredoxin; Validated
Probab=99.92 E-value=7.1e-25 Score=163.35 Aligned_cols=99 Identities=36% Similarity=0.723 Sum_probs=88.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEee
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaC 139 (185)
|..|+|+|.+.++|..+.|++++|+|||++|+++||++|++|+.|.||+|++++++|.+.+.+...|+++++++||+|+|
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C 80 (99)
T CHL00134 1 MATYKVTLLSEEEGIDVTIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTC 80 (99)
T ss_pred CCeEEEEEEecCCCCeEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEe
Confidence 56789999764456667899999999999999999999999999999999999999999886666689889999999999
Q ss_pred eeEECCCeEEEcCCcchhh
Q 029951 140 VGYPSSDVEVETQDEDEVY 158 (185)
Q Consensus 140 qa~p~sDl~Iel~~~~~~~ 158 (185)
+++|.+|++|+++..+.+|
T Consensus 81 ~~~~~~d~~i~~~~~~~~~ 99 (99)
T CHL00134 81 VAYPTSDCTILTHQEEELY 99 (99)
T ss_pred eCEECCCeEEEeccccccC
Confidence 9999999999999887653
No 2
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=99.91 E-value=7.1e-24 Score=157.11 Aligned_cols=96 Identities=39% Similarity=0.779 Sum_probs=85.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.++|+|.+. +|..++|.+++|+||||+++++||+||++|++|.||+|+++|++|.+.+.+...|+++++++|++|+||+
T Consensus 2 ~~~v~~~~~-~~~~~~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~ 80 (97)
T TIGR02008 2 TYKVTLVNP-DGGEETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVA 80 (97)
T ss_pred eEEEEEEEC-CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeC
Confidence 478888532 4666899999999999999999999999999999999999999999987655568888899999999999
Q ss_pred EECCCeEEEcCCcchhh
Q 029951 142 YPSSDVEVETQDEDEVY 158 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~~~ 158 (185)
++.+|++|++++.+.+|
T Consensus 81 ~~~~di~v~~~~~~~~~ 97 (97)
T TIGR02008 81 YPTSDCTIETHKEEDLY 97 (97)
T ss_pred EECCCeEEEeccccccC
Confidence 99999999999877654
No 3
>PLN03136 Ferredoxin; Provisional
Probab=99.91 E-value=1e-23 Score=167.95 Aligned_cols=109 Identities=39% Similarity=0.684 Sum_probs=93.5
Q ss_pred ccccccccC-----CCCCCCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCc
Q 029951 47 QTTAGVNGS-----YSPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121 (185)
Q Consensus 47 ~~~~~~~~~-----~~~~~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~ 121 (185)
+..||.... +...|..++|+|... +| .++|++++|++|||+++++||++||+|+.|.||+|++++++|.+.+.
T Consensus 34 ~~~~~~~~~~~~~~~~~~m~~~~V~l~~~-~~-~~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~ 111 (148)
T PLN03136 34 QSLFGLKSSTARGGRVTAMATYKVKFITP-EG-EQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQS 111 (148)
T ss_pred ccccccccccccCcccceeeeEEEEEecC-CC-cEEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccC
Confidence 456666432 245577899999532 22 37899999999999999999999999999999999999999999987
Q ss_pred ccCCCChhhhcCCeEEeeeeEECCCeEEEcCCcchh
Q 029951 122 EALGISAELKSKGYALLCVGYPSSDVEVETQDEDEV 157 (185)
Q Consensus 122 e~~~Ls~~e~~~g~rLaCqa~p~sDl~Iel~~~~~~ 157 (185)
+...|++++.++||+|+||++|.+|++|+++.++++
T Consensus 112 ~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~~l 147 (148)
T PLN03136 112 DQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAI 147 (148)
T ss_pred cccCCCHHHhcCCEEEEeEeEECCCcEEecCChhhc
Confidence 777799999999999999999999999999988765
No 4
>PTZ00038 ferredoxin; Provisional
Probab=99.89 E-value=1.3e-22 Score=167.37 Aligned_cols=98 Identities=35% Similarity=0.632 Sum_probs=88.2
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEee
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaC 139 (185)
+..|+|+|.....+ +++++++|+||||+|+++||++|++|+.|.||+|+++|++|++.+.+...|+++++++||+|+|
T Consensus 93 ~~~~~Vt~~~~~g~--~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaC 170 (191)
T PTZ00038 93 PLFYNITLQTPDGE--KVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLC 170 (191)
T ss_pred CceEEEEEEeCCCc--EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEe
Confidence 46799999743223 7899999999999999999999999999999999999999999988777899999999999999
Q ss_pred eeEECCCeEEEcCCcchhhh
Q 029951 140 VGYPSSDVEVETQDEDEVYW 159 (185)
Q Consensus 140 qa~p~sDl~Iel~~~~~~~~ 159 (185)
|++|.+|++|+++++++++.
T Consensus 171 qa~p~sDi~Ie~p~e~~~~~ 190 (191)
T PTZ00038 171 TCYPKSDCTIETHKEDELHD 190 (191)
T ss_pred eCEECCCeEEecCChHHhcc
Confidence 99999999999999887643
No 5
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=99.86 E-value=1.3e-21 Score=141.57 Aligned_cols=83 Identities=28% Similarity=0.539 Sum_probs=70.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCC-CchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPE-DQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCV 140 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~-g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCq 140 (185)
|++|+|.+ +| +.|++++ ++|||++++++|+++||+|++|.||+|++++++|++++.+.. ..+.++|++|+|+
T Consensus 1 ~~~v~~~~--~~--~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~ 73 (84)
T PRK10713 1 MARVTLRI--TG--TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCC 73 (84)
T ss_pred CCEEEEEe--CC--cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEee
Confidence 35677765 46 7899986 599999999999999999999999999999999999874332 2356789999999
Q ss_pred eEECCCeEEEc
Q 029951 141 GYPSSDVEVET 151 (185)
Q Consensus 141 a~p~sDl~Iel 151 (185)
++|.+|++|++
T Consensus 74 ~~p~sd~~ie~ 84 (84)
T PRK10713 74 CRAKGDIEIEM 84 (84)
T ss_pred CEECCCEEEeC
Confidence 99999999874
No 6
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.82 E-value=7.2e-20 Score=160.29 Aligned_cols=116 Identities=31% Similarity=0.517 Sum_probs=93.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCc--ccCCCChhhhcCCeEEeee
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP--EALGISAELKSKGYALLCV 140 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~--e~~~Ls~~e~~~g~rLaCq 140 (185)
++|+|.+ .| ++|++++|+|||++++++||.++++|++|.||+|++++++|.+.+. +...|++.++++|++|+||
T Consensus 3 ~~v~~~~--~~--~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 78 (339)
T PRK07609 3 FQVTLQP--SG--RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCC 78 (339)
T ss_pred EEEEEec--CC--eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEee
Confidence 6788876 45 7899999999999999999999999999999999999999999775 5667898899999999999
Q ss_pred eEECCCeEEEcCCcchhhhhhhcccc----cCCCccccceeeeecc
Q 029951 141 GYPSSDVEVETQDEDEVYWLQFGRYF----ARGPVERDDYALELAL 182 (185)
Q Consensus 141 a~p~sDl~Iel~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 182 (185)
++|.+|++|+++..+.+...+...+. ...++..+-+.|.|..
T Consensus 79 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~V~~~~~~~~d~~~l~l~~ 124 (339)
T PRK07609 79 AKPLSDLVLEAREVPALGDIPVKKLPCRVASLERVAGDVMRLKLRL 124 (339)
T ss_pred CEECCCEEEEeccccccccccceEEEEEEEEEEcCCCcEEEEEEEc
Confidence 99999999999876654333333221 2344555556666653
No 7
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.78 E-value=1.8e-18 Score=152.49 Aligned_cols=93 Identities=28% Similarity=0.400 Sum_probs=80.5
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCC--cccCCCChhhhcCCeEEeee
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYALLCV 140 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~g~rLaCq 140 (185)
++|++.+. +|....|++++|+||||+++++|+.+|++|+.|.||+|++++++|.+.. .+...|++.++++|++|+||
T Consensus 3 ~~v~~~~~-~~~~~~~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~ 81 (340)
T PRK11872 3 HKVALSFA-DGKTLFFPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQ 81 (340)
T ss_pred eEEEEEec-CCcEEEEEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEee
Confidence 67777542 4766779999999999999999999999999999999999999999864 34556888888999999999
Q ss_pred eEECCCeEEEcCCcch
Q 029951 141 GYPSSDVEVETQDEDE 156 (185)
Q Consensus 141 a~p~sDl~Iel~~~~~ 156 (185)
+++.+|++|+++....
T Consensus 82 ~~~~~d~~i~~~~~~~ 97 (340)
T PRK11872 82 TRVKSDAAFYFDFDSS 97 (340)
T ss_pred CEECCceEEEecCccc
Confidence 9999999999875433
No 8
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=99.77 E-value=2.4e-18 Score=121.81 Aligned_cols=78 Identities=29% Similarity=0.615 Sum_probs=70.2
Q ss_pred CcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECCCeEEE
Q 029951 73 GVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVE 150 (185)
Q Consensus 73 G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~sDl~Ie 150 (185)
|..+++++++|++||++++++|+.++++|+.|.||+|+++|.+|.+.+.....+...+..+++||+||+++.+|++|+
T Consensus 7 ~~~~~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~ 84 (84)
T cd00207 7 GSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE 84 (84)
T ss_pred CCCEEEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence 334899999999999999999999999999999999999999999987665666777788999999999999999874
No 9
>PRK05713 hypothetical protein; Provisional
Probab=99.77 E-value=2.5e-18 Score=149.67 Aligned_cols=104 Identities=26% Similarity=0.459 Sum_probs=81.8
Q ss_pred EEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECCCeEEEcCCcc
Q 029951 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEVETQDED 155 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~sDl~Iel~~~~ 155 (185)
++|++++|+||||+|+++||.+|++|++|.||+|++++++|.+.......|+++++++|+||+||+++.+|++|++++..
T Consensus 9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~~~~ 88 (312)
T PRK05713 9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVFDPQ 88 (312)
T ss_pred eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEecCcc
Confidence 78999999999999999999999999999999999999999987655567888889999999999999999999987322
Q ss_pred hhhhhhhcccccCCCccccceeeeec
Q 029951 156 EVYWLQFGRYFARGPVERDDYALELA 181 (185)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (185)
....+ .+-....++..|-+.|+|.
T Consensus 89 -~~~~~-~~V~~~~~~t~dv~~l~l~ 112 (312)
T PRK05713 89 -RDGLP-ARVVALDWLGGDVLRLRLE 112 (312)
T ss_pred -cCcCC-eEEEEEecCCCCEEEEEEc
Confidence 21111 2222234445555555554
No 10
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=99.76 E-value=1.6e-18 Score=129.92 Aligned_cols=79 Identities=28% Similarity=0.495 Sum_probs=63.5
Q ss_pred EEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecC--ccCCcc---cCCCChhhhcCCeEEeeeeEECCCeEEE
Q 029951 76 HEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSG--QIKQPE---ALGISAELKSKGYALLCVGYPSSDVEVE 150 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G--~v~~~e---~~~Ls~~e~~~g~rLaCqa~p~sDl~Ie 150 (185)
..+.++.|+|||++|+++||+++|+||.|.||+|+|+|++| .+.+.+ ...|.+.....++||+||+++.+|+.|+
T Consensus 15 ~~~~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i~ 94 (102)
T COG0633 15 VTEAVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIE 94 (102)
T ss_pred eEEeccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcceE
Confidence 55666669999999999999999999999999999999999 665532 2233334456779999999999998876
Q ss_pred cCCc
Q 029951 151 TQDE 154 (185)
Q Consensus 151 l~~~ 154 (185)
+-..
T Consensus 95 ~~~~ 98 (102)
T COG0633 95 VVEE 98 (102)
T ss_pred EEec
Confidence 5443
No 11
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.75 E-value=4.3e-18 Score=149.16 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=76.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.++|++.. .| +++.+++|+|||++|+++||++|++|+.|.||+|++++++|.+.+.....|+++++++|++|+||+
T Consensus 248 ~~~v~~~~--~~--~~~~~~~~~~lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~ 323 (332)
T PRK10684 248 GLTFTKLQ--PA--REFYAPVGTTLLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSC 323 (332)
T ss_pred ceEEEEec--CC--EEEEeCCCChHHHHHHHcCCCccCCCCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeC
Confidence 46666654 45 789999999999999999999999999999999999999999998766779999999999999999
Q ss_pred EECCCeEEE
Q 029951 142 YPSSDVEVE 150 (185)
Q Consensus 142 ~p~sDl~Ie 150 (185)
+|.+|++|+
T Consensus 324 ~~~~d~~i~ 332 (332)
T PRK10684 324 HPQGDLVLA 332 (332)
T ss_pred EECCCeEEC
Confidence 999998873
No 12
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.75 E-value=5.9e-18 Score=148.89 Aligned_cols=89 Identities=30% Similarity=0.572 Sum_probs=77.8
Q ss_pred CceEEEEEeCCCCcEEE-EEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEee
Q 029951 61 PTHKVTVHDRFRGVVHE-FLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLC 139 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~-~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaC 139 (185)
..++|+|.. +|.... +.+++|+|||++++++||+++++|+.|.||+|++++++|.+.+.+...|+++++++|++|+|
T Consensus 261 ~~~~v~~~~--~~~~~~~~~~~~~~slL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C 338 (352)
T TIGR02160 261 DVSKVTVTL--DGRSTETSSLSRDESVLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTC 338 (352)
T ss_pred CceEEEEEE--CCceEEEEecCCCCcHHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEe
Confidence 346888876 464443 67899999999999999999999999999999999999999987766789989999999999
Q ss_pred eeEECCC-eEEEc
Q 029951 140 VGYPSSD-VEVET 151 (185)
Q Consensus 140 qa~p~sD-l~Iel 151 (185)
|++|.+| ++|++
T Consensus 339 ~~~~~~~~~~~~~ 351 (352)
T TIGR02160 339 QAYPLSDKLVVDY 351 (352)
T ss_pred eEEECCCcEEEec
Confidence 9999987 77764
No 13
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.75 E-value=5.6e-18 Score=152.62 Aligned_cols=93 Identities=24% Similarity=0.384 Sum_probs=80.2
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCC--cccCCCChhhhcCCeE
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYA 136 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~g~r 136 (185)
|.+++|+|... +|..+++++++|+|||++++++|+++++.|+ .|.||+|+|++.+|.+.. .+...|++.+.++|+|
T Consensus 27 ~~~~~v~v~~~-~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~r 105 (405)
T TIGR01941 27 VSSGDITIGIN-DDEEKSITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWR 105 (405)
T ss_pred cccccEEEEEc-CCCceEEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcE
Confidence 55666777652 4556899999999999999999999999999 699999999999998764 3456788888999999
Q ss_pred EeeeeEECCCeEEEcCC
Q 029951 137 LLCVGYPSSDVEVETQD 153 (185)
Q Consensus 137 LaCqa~p~sDl~Iel~~ 153 (185)
|+||+.+.+|++|+++.
T Consensus 106 LaCq~~~~~d~~i~~~~ 122 (405)
T TIGR01941 106 LSCQVKVKQDMSIEIPE 122 (405)
T ss_pred EEeeCEECCCEEEEECc
Confidence 99999999999999974
No 14
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=99.73 E-value=1.4e-17 Score=126.04 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=66.4
Q ss_pred EEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCccc-----CCCChh-hhcCCeEEeeeeEEC-CCe
Q 029951 76 HEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEA-----LGISAE-LKSKGYALLCVGYPS-SDV 147 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e~-----~~Ls~~-e~~~g~rLaCqa~p~-sDl 147 (185)
++|++.+|+|||++++++|++|+++|+ .|.||+|+++|.+|....... ..|+.. +..++|||+||+++. +|+
T Consensus 16 ~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~~~dl 95 (110)
T TIGR02007 16 AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVADEDL 95 (110)
T ss_pred eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEcCCCE
Confidence 889999999999999999999999999 899999999999996543322 223222 346789999999988 599
Q ss_pred EEEcCCcch
Q 029951 148 EVETQDEDE 156 (185)
Q Consensus 148 ~Iel~~~~~ 156 (185)
+|+++....
T Consensus 96 ~v~~~~~~~ 104 (110)
T TIGR02007 96 VVEIPKYTI 104 (110)
T ss_pred EEEECchhh
Confidence 999986543
No 15
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=99.73 E-value=1.2e-17 Score=128.17 Aligned_cols=92 Identities=20% Similarity=0.260 Sum_probs=74.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccC-------CcccCCCC-hhhhcCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIK-------QPEALGIS-AELKSKG 134 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~-------~~e~~~Ls-~~e~~~g 134 (185)
+|+|... +|..+++.+..|+|||++++++|+++++.|+ .|.||+|+|+|+++... ..|...|+ ..+..++
T Consensus 2 ~V~fi~~-~G~~~~v~~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~ 80 (117)
T PLN02593 2 SVTFVDK-DGEERTVKAPVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTET 80 (117)
T ss_pred EEEEEcC-CCCEEEEEECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCC
Confidence 6777542 6888899999999999999999999999999 79999999999654321 12334555 3456789
Q ss_pred eEEeeeeEECC---CeEEEcCCcch
Q 029951 135 YALLCVGYPSS---DVEVETQDEDE 156 (185)
Q Consensus 135 ~rLaCqa~p~s---Dl~Iel~~~~~ 156 (185)
+||+||+.+.+ +++|++|+.+.
T Consensus 81 sRLaCQ~~v~~~~~~~~v~ip~~~~ 105 (117)
T PLN02593 81 SRLGCQVIAKPELDGMRLALPAATR 105 (117)
T ss_pred eEecceeEeecCCCCEEEEcCchhc
Confidence 99999999984 69999998653
No 16
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=99.70 E-value=5.6e-17 Score=128.60 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=79.4
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CCCCCCCCC-cccccCceEEEecCccCC------cccCCCChh-h
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-L 130 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~~-e 130 (185)
...++|+|.. .+|..++++++.|+|||+++.++ |++|++.|+ .|.||+|+|+|.+|+... .|...|+.. +
T Consensus 33 ~g~v~I~~~~-~dG~~~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~ 111 (143)
T PTZ00490 33 PGKVKVCVKK-RDGTHCDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALD 111 (143)
T ss_pred CCcEEEEEEc-CCCCEEEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhcccc
Confidence 3578899987 47888999999999999999995 799999999 999999999999875432 244566655 6
Q ss_pred hcCCeEEeeeeEECC---CeEEEcCCcc
Q 029951 131 KSKGYALLCVGYPSS---DVEVETQDED 155 (185)
Q Consensus 131 ~~~g~rLaCqa~p~s---Dl~Iel~~~~ 155 (185)
..+++||+||+.+.. +++|++|+..
T Consensus 112 ~~~gsRLaCQi~v~~~ldgl~V~vp~~~ 139 (143)
T PTZ00490 112 VKETSRLACQVDLTPEMDGLEVELPSYV 139 (143)
T ss_pred CCCCcEEeeeEEEecCCCCEEEEeCccc
Confidence 789999999999986 4699998754
No 17
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=99.70 E-value=2.8e-17 Score=115.61 Aligned_cols=72 Identities=26% Similarity=0.497 Sum_probs=61.4
Q ss_pred CCcEEEEEeCCCch-HHHHHHHC-CCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCe-EEeeeeEEC
Q 029951 72 RGVVHEFLVPEDQY-ILHTAESQ-NITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGY-ALLCVGYPS 144 (185)
Q Consensus 72 ~G~~~~~~v~~g~t-LLdaa~~~-GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~-rLaCqa~p~ 144 (185)
+|+.++|++++|++ ||++++++ |+.++++|+.|.||+|+++|++|++ +.....++.++.++++ ||+||++|+
T Consensus 4 ~g~~~~~~~~~~~~~ll~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t 78 (78)
T PF00111_consen 4 NGKGVTVEVPPGETLLLDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT 78 (78)
T ss_dssp TTEEEEEEEETTSBBHHHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred CCeEEEEEeCCCccHHHHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence 57778999999999 99999999 9999999998889999999999998 4334456666666665 799999874
No 18
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.69 E-value=1.6e-16 Score=143.28 Aligned_cols=78 Identities=28% Similarity=0.447 Sum_probs=71.0
Q ss_pred EEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCc--ccCCCChhhhcCCeEEeeeeEECCCeEEEcC
Q 029951 76 HEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP--EALGISAELKSKGYALLCVGYPSSDVEVETQ 152 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~--e~~~Ls~~e~~~g~rLaCqa~p~sDl~Iel~ 152 (185)
+++++++|+|||++++++|++++++|+ +|.||+|+|++++|.+... +...|++.++++|+||+||+++.+|++|+++
T Consensus 46 ~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~~ie~~ 125 (409)
T PRK05464 46 KTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDMKIEVP 125 (409)
T ss_pred EEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCEEEEEC
Confidence 789999999999999999999999999 6999999999999987543 4556888888999999999999999999987
Q ss_pred C
Q 029951 153 D 153 (185)
Q Consensus 153 ~ 153 (185)
.
T Consensus 126 ~ 126 (409)
T PRK05464 126 E 126 (409)
T ss_pred c
Confidence 4
No 19
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.51 E-value=2.1e-14 Score=125.52 Aligned_cols=91 Identities=25% Similarity=0.403 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccC--CcccCCCChhhhcCCeEE
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIK--QPEALGISAELKSKGYAL 137 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~--~~e~~~Ls~~e~~~g~rL 137 (185)
...+|.|+. ...+++.++.|.+||.++..+||.|++.|| .|.||.|+|+|++|.-+ ..+...++..+.++||||
T Consensus 35 gd~ti~IN~---d~e~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RL 111 (410)
T COG2871 35 GDITIKING---DPEKTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRL 111 (410)
T ss_pred CceEEEeCC---ChhhceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceE
Confidence 446666653 335899999999999999999999999999 99999999999998654 356677888889999999
Q ss_pred eeeeEECCCeEEEcCCc
Q 029951 138 LCVGYPSSDVEVETQDE 154 (185)
Q Consensus 138 aCqa~p~sDl~Iel~~~ 154 (185)
+||+.+..||.|+++++
T Consensus 112 sCQ~~Vk~dm~levpEe 128 (410)
T COG2871 112 SCQVNVKHDMDLEVPEE 128 (410)
T ss_pred EEEecccccceeechHH
Confidence 99999999999999874
No 20
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=99.47 E-value=4e-14 Score=130.47 Aligned_cols=108 Identities=24% Similarity=0.342 Sum_probs=84.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCcc-cCCCChhhhcCCeEEeee
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPE-ALGISAELKSKGYALLCV 140 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e-~~~Ls~~e~~~g~rLaCq 140 (185)
..|+|.| +| +..+ ++|+|||++|++.|+.|.+.|| +|.||+|.|.|.+|...... ... ....++.||||+||
T Consensus 2 p~v~f~p--sg--kr~~-~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~ 75 (614)
T COG3894 2 PLVTFMP--SG--KRGE-DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQ 75 (614)
T ss_pred ceeEeec--CC--CcCC-CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeee
Confidence 5689998 58 5666 9999999999999999999999 99999999999999854321 111 11235679999999
Q ss_pred eEECCCeEEEcCCcchh-----hhhhhcccccCCCccccce
Q 029951 141 GYPSSDVEVETQDEDEV-----YWLQFGRYFARGPVERDDY 176 (185)
Q Consensus 141 a~p~sDl~Iel~~~~~~-----~~~~~~~~~~~~~~~~~~~ 176 (185)
+.+.+|++|.+|+++.+ ...-+.|...++|+-|..|
T Consensus 76 ~~v~gd~~i~ip~es~l~~q~v~k~~~~~~~e~n~av~~~y 116 (614)
T COG3894 76 AQVLGDLVIFIPPESRLERQKVRKDAIERVIERNPAVRKCY 116 (614)
T ss_pred hhhcCceEEEcCchhhHHHHHHHHHhhhhhhhcCCceeEee
Confidence 99999999999998765 3344555555777766555
No 21
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.06 E-value=4.2e-10 Score=95.12 Aligned_cols=73 Identities=23% Similarity=0.441 Sum_probs=61.3
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSK 133 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~ 133 (185)
|.+++|+| +| +.|++++|+|||+||+++|+.||+.|. .|.|+.|+|+| +|. .
T Consensus 1 m~~v~i~i----dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~ 58 (234)
T PRK07569 1 MSVKTLTI----DD--QLVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------N 58 (234)
T ss_pred CceEEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------C
Confidence 45566666 57 779999999999999999999999998 89999999998 332 2
Q ss_pred CeEEeeeeEECCCeEEEcCCc
Q 029951 134 GYALLCVGYPSSDVEVETQDE 154 (185)
Q Consensus 134 g~rLaCqa~p~sDl~Iel~~~ 154 (185)
+.+.+|++.+..+|+|.+...
T Consensus 59 ~~~~aC~t~v~~Gm~v~t~~~ 79 (234)
T PRK07569 59 KLLPACVTPVAEGMVVQTNTP 79 (234)
T ss_pred ccccCcCCCCCCCCEEEECCH
Confidence 456799999999999988754
No 22
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=99.02 E-value=1.1e-09 Score=87.63 Aligned_cols=94 Identities=18% Similarity=0.210 Sum_probs=74.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCC------cccCCCCh-hhhcC
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKSK 133 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e~~~ 133 (185)
..+|+|... +|.++.+.+..|+|||++|.++||+++..|. .-.|.+|+|.|.+-..+. .|...|+- -.+.+
T Consensus 43 ~i~Itfv~~-dG~~~~i~g~vGdtlLd~ah~n~idleGACEgslACSTCHViv~~~~yekl~ep~DeE~DmLDlA~gLt~ 121 (159)
T KOG3309|consen 43 DIKITFVDP-DGEEIKIKGKVGDTLLDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPEPEDEENDMLDLAFGLTE 121 (159)
T ss_pred eEEEEEECC-CCCEEEeeeecchHHHHHHHHcCCCccccccccccccceEEEEcHHHHhcCCCCcchHHHHHHhhhcccc
Confidence 488999874 7999999999999999999999999999999 889999999997654432 12333331 23567
Q ss_pred CeEEeeeeEECCC---eEEEcCCcch
Q 029951 134 GYALLCVGYPSSD---VEVETQDEDE 156 (185)
Q Consensus 134 g~rLaCqa~p~sD---l~Iel~~~~~ 156 (185)
.+||.||....-+ |+|.+|..-+
T Consensus 122 tSRLGCQI~l~keldG~~v~vP~atr 147 (159)
T KOG3309|consen 122 TSRLGCQIVLTKELDGMRVAVPEATR 147 (159)
T ss_pred ccccceEEEeccccCCcEEECccccc
Confidence 8999999988654 8899987544
No 23
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.96 E-value=9.6e-10 Score=79.27 Aligned_cols=68 Identities=31% Similarity=0.500 Sum_probs=47.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCc----------ccccCceEEEecCccCCcccCCCChhhhcC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRH----------GCCTSCAVRIKSGQIKQPEALGISAELKSK 133 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~----------G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~ 133 (185)
.|+|.. +| +.+++++|+|||+|+.++|+.||+.|.. |.|+.|.|.|- | .
T Consensus 3 ~v~i~i--dG--~~v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~ 61 (82)
T PF13510_consen 3 MVTITI--DG--KPVEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------E 61 (82)
T ss_dssp EEEEEE--TT--EEEEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------E
T ss_pred EEEEEE--CC--EEEEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------C
Confidence 345544 68 8899999999999999999999999987 99999999983 1 1
Q ss_pred CeEEeeeeEECCCeEEEcC
Q 029951 134 GYALLCVGYPSSDVEVETQ 152 (185)
Q Consensus 134 g~rLaCqa~p~sDl~Iel~ 152 (185)
..+.||++.+..+|+|...
T Consensus 62 ~~v~AC~t~v~~GM~V~T~ 80 (82)
T PF13510_consen 62 PNVRACSTPVEDGMVVETQ 80 (82)
T ss_dssp EEEETTT-B--TTEEEE--
T ss_pred cceEcccCCCcCCcEEEEe
Confidence 2368999999999999864
No 24
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.83 E-value=6.9e-09 Score=101.64 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=63.2
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCeE
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~r 136 (185)
.+|+| +| +.+++++|+|||+|++++||.||+.|. .|.|+.|+|+|.+|.+ +...+++
T Consensus 2 ~~i~i----dg--~~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~ 64 (847)
T PRK08166 2 ATIHV----DG--KEYEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLV 64 (847)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcc
Confidence 45666 57 789999999999999999999999998 6999999999998843 1234688
Q ss_pred EeeeeEECCCeEEEcCCc
Q 029951 137 LLCVGYPSSDVEVETQDE 154 (185)
Q Consensus 137 LaCqa~p~sDl~Iel~~~ 154 (185)
++|++.+..+|+|.+...
T Consensus 65 ~aC~~~v~~gm~v~t~~~ 82 (847)
T PRK08166 65 MSCMTPATDGTFISIDDP 82 (847)
T ss_pred cCcCCCCCCCCEEEeCCH
Confidence 999998888999988753
No 25
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.56 E-value=1.8e-07 Score=82.05 Aligned_cols=77 Identities=21% Similarity=0.476 Sum_probs=61.7
Q ss_pred CCCCCCceEEEEEeCCCCcEEEEEe-CCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCCh
Q 029951 56 YSPSIPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISA 128 (185)
Q Consensus 56 ~~~~~~~~~Vtv~~~~~G~~~~~~v-~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~ 128 (185)
+....+..+|+| || +.+++ ++|+|||+||+++||.||+-|. .|.|..|.|.| +|.
T Consensus 62 ~~~~~~~~~I~I----DG--k~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~----------- 123 (297)
T PTZ00305 62 YAEHKPRAIMFV----NK--RPVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT----------- 123 (297)
T ss_pred hhccCCceEEEE----CC--EEEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC-----------
Confidence 444456677777 58 89999 9999999999999999999997 57799999987 332
Q ss_pred hhhcCCeEEeeeeEECCCeEEEcCCc
Q 029951 129 ELKSKGYALLCVGYPSSDVEVETQDE 154 (185)
Q Consensus 129 ~e~~~g~rLaCqa~p~sDl~Iel~~~ 154 (185)
.+.+-+|.+.+...|+|.+..+
T Consensus 124 ----~~lv~AC~tpV~eGM~V~T~Se 145 (297)
T PTZ00305 124 ----QNLVVSCATVALPGMSIITDSR 145 (297)
T ss_pred ----cCcccccCCcCCCCCEEEeCCH
Confidence 2356689998888899987653
No 26
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=98.55 E-value=1.7e-07 Score=86.34 Aligned_cols=60 Identities=35% Similarity=0.529 Sum_probs=51.2
Q ss_pred EEEEeCCCchHHHHHHH------CCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECCCeEE
Q 029951 76 HEFLVPEDQYILHTAES------QNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDVEV 149 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~------~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~sDl~I 149 (185)
.++++++|+|||+++++ .++.++++|+.|.||+|.++| +|. .+|+|++.+.++++|
T Consensus 23 ~~v~~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i 84 (486)
T PRK06259 23 YEVPVKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMII 84 (486)
T ss_pred EEEeCCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEE
Confidence 45566799999999995 667789999999999999995 653 478999999999999
Q ss_pred EcCC
Q 029951 150 ETQD 153 (185)
Q Consensus 150 el~~ 153 (185)
+...
T Consensus 85 ~~~~ 88 (486)
T PRK06259 85 EPLD 88 (486)
T ss_pred EecC
Confidence 9775
No 27
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.32 E-value=1.1e-06 Score=83.98 Aligned_cols=73 Identities=29% Similarity=0.510 Sum_probs=60.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSK 133 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~ 133 (185)
|.+++|+| +| +.+++++|+|||++++++|+.||+.|. .|.|+.|.|++ +|. .
T Consensus 1 ~~~v~~~i----dg--~~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~ 58 (652)
T PRK12814 1 MNTISLTI----NG--RSVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------N 58 (652)
T ss_pred CCeEEEEE----CC--EEEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------c
Confidence 34566666 58 899999999999999999999999997 69999999987 331 1
Q ss_pred CeEEeeeeEECCCeEEEcCCc
Q 029951 134 GYALLCVGYPSSDVEVETQDE 154 (185)
Q Consensus 134 g~rLaCqa~p~sDl~Iel~~~ 154 (185)
+..++|++.+..+|+|.+...
T Consensus 59 ~~~~aC~t~~~~Gm~v~t~~~ 79 (652)
T PRK12814 59 RFVPACSTAVSEGMVIETENA 79 (652)
T ss_pred ceecCcCCCCCCCCEEEeCcH
Confidence 357899999999999998654
No 28
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.18 E-value=3.6e-06 Score=81.31 Aligned_cols=70 Identities=26% Similarity=0.440 Sum_probs=57.0
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCeE
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~r 136 (185)
.+|+| || +++++++|+|||+|++++||.||+-|. .|.|..|.|.|..+. ...+
T Consensus 2 ~~~~I----dg--~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~ 60 (687)
T PRK09130 2 VKLKV----DG--KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPV 60 (687)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcc
Confidence 56777 57 899999999999999999999999997 899999999984211 1234
Q ss_pred EeeeeEECCCeEEEcCC
Q 029951 137 LLCVGYPSSDVEVETQD 153 (185)
Q Consensus 137 LaCqa~p~sDl~Iel~~ 153 (185)
-+|.+.+...|+|.+..
T Consensus 61 ~sC~~~v~~gm~v~T~s 77 (687)
T PRK09130 61 ASCAMPVGEGMVIFTNT 77 (687)
T ss_pred cccCCCCCCCCEEEeCC
Confidence 57888888888888764
No 29
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.14 E-value=4.5e-06 Score=80.75 Aligned_cols=70 Identities=24% Similarity=0.508 Sum_probs=55.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCe
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGY 135 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~ 135 (185)
|.+|+| || +++++++|+|||+|++++||+||+-|- .|.|..|.|.+..+. ..
T Consensus 1 m~tI~I----DG--~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~ 58 (693)
T COG1034 1 MVTITI----DG--KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KL 58 (693)
T ss_pred CeEEEE----CC--EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------cc
Confidence 356666 68 899999999999999999999999887 578888888873321 24
Q ss_pred EEeeeeEECCCeEEEcCC
Q 029951 136 ALLCVGYPSSDVEVETQD 153 (185)
Q Consensus 136 rLaCqa~p~sDl~Iel~~ 153 (185)
+-+|.+.+..+++|.+..
T Consensus 59 ~~SC~tpv~dGM~I~T~s 76 (693)
T COG1034 59 VASCATPVTDGMVISTNS 76 (693)
T ss_pred ccccccccCCCeEEecCC
Confidence 668999777778877654
No 30
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.10 E-value=5.2e-06 Score=78.66 Aligned_cols=65 Identities=23% Similarity=0.428 Sum_probs=55.3
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 145 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~s 145 (185)
+| +++++++|+|||++++++||.||+-|. .|.|..|.|.| +|... ..+.+|.+.+..
T Consensus 4 dg--~~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~~--------------~~~~aC~~~~~~ 66 (603)
T TIGR01973 4 DG--KELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFPD--------------KPVASCATPVTD 66 (603)
T ss_pred CC--EEEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCCC--------------CcccccCCCCCC
Confidence 57 899999999999999999999999997 89999999998 33110 147799999999
Q ss_pred CeEEEcCC
Q 029951 146 DVEVETQD 153 (185)
Q Consensus 146 Dl~Iel~~ 153 (185)
+|+|.+..
T Consensus 67 gm~v~t~~ 74 (603)
T TIGR01973 67 GMKISTNS 74 (603)
T ss_pred CCEEEeCC
Confidence 99998865
No 31
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.08 E-value=7.9e-06 Score=80.47 Aligned_cols=67 Identities=25% Similarity=0.475 Sum_probs=55.6
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCeE
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~r 136 (185)
++|+| +| +.+++++|+|||+||+++||.||+-|. .|.|+.|.|.| +|. .+
T Consensus 2 v~i~I----dG--~~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~ 57 (819)
T PRK08493 2 ITITI----NG--KECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RV 57 (819)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------Ee
Confidence 45666 68 789999999999999999999998773 68899999987 331 16
Q ss_pred EeeeeEECCCeEEEcCC
Q 029951 137 LLCVGYPSSDVEVETQD 153 (185)
Q Consensus 137 LaCqa~p~sDl~Iel~~ 153 (185)
++|++.+...|+|....
T Consensus 58 ~AC~t~v~dGM~V~T~s 74 (819)
T PRK08493 58 YSCNTKAKEGMNILTNT 74 (819)
T ss_pred ccccCCCCCCCEEEecC
Confidence 79999998889998864
No 32
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=98.06 E-value=4.9e-06 Score=63.50 Aligned_cols=52 Identities=29% Similarity=0.558 Sum_probs=38.8
Q ss_pred EEEEeCCCchHHHHHHHC------CCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECC
Q 029951 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS 145 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~------GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~s 145 (185)
+++++.++.|+|+++... -+...++|+.|.||+|.++| .|. .+|||.+....
T Consensus 21 y~v~~~~~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~I-NG~-----------------~~LAC~t~v~~ 78 (110)
T PF13085_consen 21 YEVPVEPGMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRI-NGR-----------------PRLACKTQVDD 78 (110)
T ss_dssp EEEEGGSTSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEE-TTE-----------------EEEGGGSBGGG
T ss_pred EEecCCCCCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEE-CCc-----------------eecceeeEchh
Confidence 567888999999999642 46788999999999999987 332 48899887654
No 33
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=97.99 E-value=1.3e-05 Score=78.07 Aligned_cols=70 Identities=21% Similarity=0.415 Sum_probs=57.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCeE
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYA 136 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~r 136 (185)
.+|+| || +.+++++|+|||+|++++||.||+-|. .|.|..|.|++ +|. .+.+
T Consensus 2 ~~~~i----dg--~~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~ 59 (776)
T PRK09129 2 VEIEI----DG--KKVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPL 59 (776)
T ss_pred eEEEE----CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcC
Confidence 45666 68 889999999999999999999999999 58999999998 221 1236
Q ss_pred EeeeeEECCCeEEEcCCc
Q 029951 137 LLCVGYPSSDVEVETQDE 154 (185)
Q Consensus 137 LaCqa~p~sDl~Iel~~~ 154 (185)
.+|.+.+..+|+|.+...
T Consensus 60 ~aC~~~~~~gm~v~t~~~ 77 (776)
T PRK09129 60 PACATPVTDGMKVFTRSE 77 (776)
T ss_pred cccCCCCCCCCEEEcCCH
Confidence 689998888899988653
No 34
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=97.98 E-value=2e-05 Score=66.63 Aligned_cols=53 Identities=23% Similarity=0.479 Sum_probs=42.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCc
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
..+|+|.. ||+.++++++++++||++++++ |+ ...++|+.|.||.|.| +++|.
T Consensus 49 ~~~i~~~V--NG~~~~~~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~ 103 (217)
T PRK11433 49 ISPVTLKV--NGKTEQLEVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGR 103 (217)
T ss_pred CceEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCE
Confidence 44566655 6888889999999999999985 43 4889999999999999 55664
No 35
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=97.97 E-value=1.8e-05 Score=77.58 Aligned_cols=69 Identities=29% Similarity=0.527 Sum_probs=57.7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCccCCcccCCCChhhhcCCe
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGY 135 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~ 135 (185)
+++|+| || +++++++|+|||+|++++||.||+-|. .|.|..|.|.| +|. ...
T Consensus 4 ~v~~~i----dg--~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~ 61 (797)
T PRK07860 4 LVTLTI----DG--VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKP 61 (797)
T ss_pred eEEEEE----CC--EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------ccc
Confidence 456666 68 899999999999999999999999997 79999999998 332 123
Q ss_pred EEeeeeEECCCeEEEcC
Q 029951 136 ALLCVGYPSSDVEVETQ 152 (185)
Q Consensus 136 rLaCqa~p~sDl~Iel~ 152 (185)
+-+|.+.+..+|+|+..
T Consensus 62 ~~aC~t~v~~gm~V~t~ 78 (797)
T PRK07860 62 QASCTTTVTDGMVVKTQ 78 (797)
T ss_pred ccccCCCCCCCcEEEeC
Confidence 56899988889999986
No 36
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.92 E-value=7.1e-06 Score=70.45 Aligned_cols=42 Identities=14% Similarity=0.372 Sum_probs=33.3
Q ss_pred EEEEEeCCCchHHHHHHHC-------------CCCCCCCCCcccccCceEEEecCc
Q 029951 75 VHEFLVPEDQYILHTAESQ-------------NITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~-------------GI~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
++++++.++.||||++... -+...++|+.|+||+|.++| .|.
T Consensus 24 ~y~v~~~~~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~I-NG~ 78 (249)
T PRK08640 24 EFEIPYRPNMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVI-NGK 78 (249)
T ss_pred EEEecCCCCCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEE-CCc
Confidence 3556667999999999743 15678999999999999987 443
No 37
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=97.88 E-value=8.4e-06 Score=69.56 Aligned_cols=42 Identities=24% Similarity=0.524 Sum_probs=33.6
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCCCCCCCcccccCceEEEecCc
Q 029951 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
++++++.++.||||++.... +...++|+.|+||+|.++| .|.
T Consensus 25 ~y~v~~~~~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~I-NG~ 72 (239)
T PRK13552 25 TYQLEETPGMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVI-NGR 72 (239)
T ss_pred EEEecCCCCCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEE-CCe
Confidence 35666779999999997542 5678999999999999987 443
No 38
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.84 E-value=3e-05 Score=68.95 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=36.0
Q ss_pred EEEEeCCCchHHHHHHHCCCCCC------CCCCcccccCceEEEecCc
Q 029951 76 HEFLVPEDQYILHTAESQNITLP------FACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip------~~C~~G~CGtC~V~v~~G~ 117 (185)
+++++++|.||||++...++.++ .+|+.|.||+|.|+| +|.
T Consensus 21 ~~v~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~ 67 (329)
T PRK12577 21 YTLEVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR 67 (329)
T ss_pred EEEECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence 67888999999999999999885 569999999999998 454
No 39
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=97.81 E-value=6.3e-05 Score=60.89 Aligned_cols=52 Identities=15% Similarity=0.346 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCC-CCCCCCCcccccCceEEEecCc
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
..|+|.. ||+.++++++++++||+.+++.|+ ....+|+.|.||.|.|.| +|.
T Consensus 7 ~~i~~~v--NG~~~~~~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~ 59 (159)
T PRK09908 7 ITIECTI--NGMPFQLHAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGT 59 (159)
T ss_pred eeEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCc
Confidence 3455554 688889999999999999999986 699999999999999976 664
No 40
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.78 E-value=2.6e-05 Score=67.23 Aligned_cols=42 Identities=24% Similarity=0.515 Sum_probs=35.7
Q ss_pred EEEEEeCCCchHHHHHHHCCC------CCCCCCCcccccCceEEEecCc
Q 029951 75 VHEFLVPEDQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
.+++++.++.|||++++..+. ...++|+.|.||+|.+.| .|.
T Consensus 21 ~y~v~~~~~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~I-nG~ 68 (251)
T PRK12386 21 DYTVEVNEGEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEI-NGR 68 (251)
T ss_pred EEEEeCCCCCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEE-Ccc
Confidence 367788899999999999774 678999999999999987 453
No 41
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=97.72 E-value=2e-05 Score=67.78 Aligned_cols=42 Identities=24% Similarity=0.501 Sum_probs=33.0
Q ss_pred EEEE-eCCCchHHHHHHHC----------CCCCCCCCCcccccCceEEEecCcc
Q 029951 76 HEFL-VPEDQYILHTAESQ----------NITLPFACRHGCCTSCAVRIKSGQI 118 (185)
Q Consensus 76 ~~~~-v~~g~tLLdaa~~~----------GI~ip~~C~~G~CGtC~V~v~~G~v 118 (185)
++++ +.++.|||+++... .+...++|+.|+||+|.++| .|..
T Consensus 22 y~v~~~~~~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~I-NG~p 74 (250)
T PRK07570 22 YEVDDISPDMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVI-NGRP 74 (250)
T ss_pred EEecCCCCCCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEE-CCcc
Confidence 3444 45899999999742 37788999999999999987 5654
No 42
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=97.60 E-value=8.1e-05 Score=63.69 Aligned_cols=40 Identities=20% Similarity=0.456 Sum_probs=32.1
Q ss_pred EEEEeCCCchHHHHHHHC------CCCCCCCCCcccccCceEEEecC
Q 029951 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSG 116 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~------GI~ip~~C~~G~CGtC~V~v~~G 116 (185)
+.+++.++.|||+++... .+...++|+.|.||+|.++| .|
T Consensus 27 ~~v~~~~~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~I-nG 72 (244)
T PRK12385 27 YEVPYDETTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NN 72 (244)
T ss_pred EEeeCCCCCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceE-Cc
Confidence 566777999999999553 34556899999999999988 35
No 43
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=97.56 E-value=6.2e-05 Score=65.76 Aligned_cols=51 Identities=27% Similarity=0.548 Sum_probs=37.8
Q ss_pred EEEEeC---CCchHHHHHHHCC------CCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEEC
Q 029951 76 HEFLVP---EDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPS 144 (185)
Q Consensus 76 ~~~~v~---~g~tLLdaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~ 144 (185)
.+|+++ .+.||||++.... +...++|+.|+||+|.++| .|. -+|+|++.+.
T Consensus 62 ~~y~v~~~~~~~tVLd~L~~Ik~~~D~sLsfr~sCr~giCGsCam~I-NG~-----------------p~LAC~t~v~ 121 (276)
T PLN00129 62 QSYKVDLNDCGPMVLDVLIKIKNEQDPSLTFRRSCREGICGSCAMNI-DGK-----------------NTLACLTKID 121 (276)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHcCCCCeEEeccCCCCCCCCCeeEE-CCc-----------------ccccccccHh
Confidence 455555 3789999997632 4578999999999999987 443 4677777654
No 44
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.53 E-value=0.00015 Score=63.15 Aligned_cols=41 Identities=17% Similarity=0.339 Sum_probs=35.1
Q ss_pred EEEEeCCCchHHHHHHHCCCCC------CCCCCcccccCceEEEecCc
Q 029951 76 HEFLVPEDQYILHTAESQNITL------PFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v~~G~ 117 (185)
+.+++++|.|||+++...+..+ .++|+.|.||+|.|.| +|.
T Consensus 27 ~~v~~~~~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~ 73 (279)
T PRK12576 27 YKVKVDRFTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGE 73 (279)
T ss_pred EEEecCCCCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCc
Confidence 6788899999999999987654 4899999999999998 554
No 45
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=97.52 E-value=7.4e-05 Score=63.73 Aligned_cols=58 Identities=21% Similarity=0.485 Sum_probs=40.2
Q ss_pred EEEEeC--C-CchHHHHHHHCC-----CCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEEC---
Q 029951 76 HEFLVP--E-DQYILHTAESQN-----ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPS--- 144 (185)
Q Consensus 76 ~~~~v~--~-g~tLLdaa~~~G-----I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~--- 144 (185)
.+|+++ + +.|||+++..-. +...++|+.|+||+|.++| .|. -+|||++...
T Consensus 23 ~~y~v~~~~~~~tvld~L~~ik~~d~~l~fr~sCr~giCGsCa~~i-NG~-----------------~~LaC~t~~~~~~ 84 (235)
T PRK12575 23 QRYEIAPRAEDRMLLDVLGRVKAQDETLSYRRSCREGICGSDAMNI-NGR-----------------NGLACLTNMQALP 84 (235)
T ss_pred EEEEecCCCCCCcHHHHHHHHHhcCCCeeeeccCCCCCCCCCeeEE-CCe-----------------EcchhhCcHhHcC
Confidence 345554 4 468999986532 4577999999999999987 443 4777777665
Q ss_pred CCeEEEc
Q 029951 145 SDVEVET 151 (185)
Q Consensus 145 sDl~Iel 151 (185)
..++|+.
T Consensus 85 ~~i~ieP 91 (235)
T PRK12575 85 REIVLRP 91 (235)
T ss_pred CCEEEeE
Confidence 3455554
No 46
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=97.48 E-value=0.00029 Score=56.45 Aligned_cols=45 Identities=20% Similarity=0.440 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
||+.++++++++++||+.+++. |+ ....+|+.|.||+|.|.| +|.
T Consensus 7 NG~~~~~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~ 53 (148)
T TIGR03193 7 NGRWREDAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR 53 (148)
T ss_pred CCEEEEeecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence 5887889999999999999974 75 589999999999999977 554
No 47
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=97.39 E-value=0.00011 Score=62.79 Aligned_cols=41 Identities=29% Similarity=0.536 Sum_probs=32.1
Q ss_pred EEEEeCCCchHHHHHHHC------CCCCCCCCCcccccCceEEEecCc
Q 029951 76 HEFLVPEDQYILHTAESQ------NITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~------GI~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
++++..+|.+|||++..- -+.+.++||.|+||+|.+.| .|.
T Consensus 22 yev~~~~~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~I-NG~ 68 (234)
T COG0479 22 YEVPYDEGMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNI-NGK 68 (234)
T ss_pred EEecCCCCCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEE-CCc
Confidence 344455999999999653 35688999999999999987 444
No 48
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=97.38 E-value=0.00019 Score=60.66 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=35.4
Q ss_pred EEEEeC-CCchHHHHHHHCC-CCC-----CCCCCcccccCceEEEecCcc
Q 029951 76 HEFLVP-EDQYILHTAESQN-ITL-----PFACRHGCCTSCAVRIKSGQI 118 (185)
Q Consensus 76 ~~~~v~-~g~tLLdaa~~~G-I~i-----p~~C~~G~CGtC~V~v~~G~v 118 (185)
+.++++ ++.|||+++...+ ..+ .++|+.|.||+|.|+| +|..
T Consensus 20 ~~v~~~~~~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~ 68 (232)
T PRK05950 20 YEVDVDECGPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN 68 (232)
T ss_pred EEeCCCCCCCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence 677888 9999999999998 333 5899999999999998 5643
No 49
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=97.28 E-value=0.00023 Score=59.61 Aligned_cols=41 Identities=27% Similarity=0.570 Sum_probs=34.1
Q ss_pred EEEEeCCCchHHHHHHHCC------CCCCCCCCcccccCceEEEecCc
Q 029951 76 HEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
+++++++|+|||+++.+.+ +....+|+.|.||+|.|+| +|.
T Consensus 17 ~~v~~~~~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~ 63 (220)
T TIGR00384 17 YEVPADEGMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGK 63 (220)
T ss_pred EEEeCCCCCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCE
Confidence 5677889999999999865 4456899999999999986 554
No 50
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=97.14 E-value=0.0012 Score=52.95 Aligned_cols=45 Identities=20% Similarity=0.418 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
||+.+++.+.++++|++.+++. |+ ....+|+.|.||.|.|.| +|.
T Consensus 9 NG~~~~~~~~~~~~Ll~~LR~~~~ltgtK~gC~~G~CGACtVlv-dG~ 55 (151)
T TIGR03198 9 NGQAWEVAAVPTTRLSDLLRKELQLTGTKVSCGIGRCGACSVLI-DGK 55 (151)
T ss_pred CCEEEEeecCCCcHHHHHHHhccCCCCCCCCCCCCcCCccEEEE-CCc
Confidence 6887888899999999999985 75 488899999999999987 553
No 51
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=97.09 E-value=0.0018 Score=52.30 Aligned_cols=46 Identities=24% Similarity=0.466 Sum_probs=39.1
Q ss_pred CCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCcc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQI 118 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~v 118 (185)
+|+.+++++.++++||+++++. |+ ...++|+.|.||.|.|.+ +|+.
T Consensus 9 NG~~~~~~~~p~~~Ll~~LRd~l~ltgtk~GC~~g~CGACtVlv-DG~~ 56 (156)
T COG2080 9 NGEPVELDVDPRTPLLDVLRDELGLTGTKKGCGHGQCGACTVLV-DGEA 56 (156)
T ss_pred CCeEEEEEeCCCChHHHHHHHhcCCCCcCCCCCCccCCceEEEE-CCeE
Confidence 5888999999999999999954 55 478999999999999965 6653
No 52
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=96.97 E-value=0.0025 Score=62.51 Aligned_cols=49 Identities=35% Similarity=0.660 Sum_probs=40.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEecCc
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKSGQ 117 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~G~ 117 (185)
+.+|+| +| +++++++|+|||++++++||.||+-|. -|.|-+|.|.+ +|.
T Consensus 5 ~i~vti----dg--~~~~v~~G~tiL~a~~~~gI~iP~iCy~~~l~pi~sCd~ClVEi-dG~ 59 (978)
T COG3383 5 MITVTI----DG--RSIEVEEGTTILRAANRNGIEIPHICYHESLGPIGSCDTCLVEI-DGK 59 (978)
T ss_pred eEEEEE----CC--eEEecCCChHHHHHHHhcCCcccceeccCCCCcccccceEEEEe-cCc
Confidence 355565 57 899999999999999999999999998 36788888884 554
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=96.27 E-value=0.0066 Score=56.55 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCcEEEE-EeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEE
Q 029951 72 RGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 72 ~G~~~~~-~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v 113 (185)
||+.+++ +++++++||+.++++ |+ ....+|+.|.||.|.|.|
T Consensus 6 Ng~~~~~~~~~~~~~ll~~lR~~~~l~g~k~gC~~G~CGaCtv~~ 50 (467)
T TIGR02963 6 NGETVTLSDVDPTRTLLDYLREDAGLTGTKEGCAEGDCGACTVVV 50 (467)
T ss_pred CCEEEEeecCCCCCCHHHHHHHhcCCCCCCcccCCCCCCceEEEE
Confidence 5877888 699999999999974 75 599999999999999987
No 54
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=96.13 E-value=0.012 Score=59.38 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=40.5
Q ss_pred EEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCC-CCcccccCceEEEecCc
Q 029951 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFA-CRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 65 Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~-C~~G~CGtC~V~v~~G~ 117 (185)
|+|.. ||+.++++++++++||+.+++.|+. .... |+.|.||.|.|.| +|.
T Consensus 3 i~~~v--Ng~~~~~~~~~~~~l~~~LR~~~~~~~k~g~c~~g~CGaCtv~~-dg~ 54 (956)
T PRK09800 3 IHFTL--NGAPQELTVNPGENVQKLLFNMGMHSVRNSDDGFGFAGSDAIIF-NGN 54 (956)
T ss_pred EEEEE--CCEEEEEecCCCCCHHHHHHHCCCCccccCCCCcccCCCCEEEE-CCe
Confidence 44544 6888899999999999999998764 5565 7899999999976 664
No 55
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=95.70 E-value=0.019 Score=57.18 Aligned_cols=43 Identities=26% Similarity=0.570 Sum_probs=37.2
Q ss_pred CCcEEEEEeCCCchHHHHHHH-CCC-CCCCCCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAES-QNI-TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~-~GI-~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
|| ..++++++++||+.+++ .|+ ....+|+.|.||.|.|.| +|+
T Consensus 6 ng--~~~~~~~~~~l~~~lr~~~~~~~~k~gc~~g~cgactv~~-dg~ 50 (848)
T TIGR03311 6 NG--REVDVNEEKKLLEFLREDLRLTGVKNGCGEGACGACTVIV-NGK 50 (848)
T ss_pred CC--EEeeCCCCCcHHHHHHHhcCCCcCCCCCCCCCCCCcEEEE-CCe
Confidence 57 57889999999999997 486 689999999999999976 664
No 56
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=95.35 E-value=0.025 Score=57.06 Aligned_cols=45 Identities=11% Similarity=0.058 Sum_probs=38.6
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCC-CCC-CCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNIT-LPF-ACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~-ip~-~C~~G~CGtC~V~v~~G~ 117 (185)
||+.++++++++++||+.+++.|+. +.. .|+.|.||.|.|.| +|.
T Consensus 4 Ng~~~~~~~~~~~~l~~~LR~~~l~~~k~~~c~~g~CGaCtv~~-dg~ 50 (951)
T TIGR03313 4 NGAPQTLECKLGENVQTLLFNMGMHSVRNSDDGFGFAGSDAILF-NGV 50 (951)
T ss_pred CCEEEEEecCCCCCHHHHHHHCCCCCCcCCCCCcccCCCCEEEE-CCe
Confidence 5777889999999999999998864 666 68999999999976 664
No 57
>PLN00192 aldehyde oxidase
Probab=94.91 E-value=0.056 Score=56.38 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=39.6
Q ss_pred EEEEeCCCCcEEEE-EeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEE
Q 029951 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 65 Vtv~~~~~G~~~~~-~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v 113 (185)
|+|.. ||+.+++ .++++.+||+.+++. |+ ....+|+.|.||.|.|.|
T Consensus 6 i~~~v--Ng~~~~~~~~~p~~~Ll~~LR~~~~ltgtK~gC~~G~CGaCtV~v 55 (1344)
T PLN00192 6 LVFAV--NGERFELSSVDPSTTLLEFLRTQTPFKSVKLGCGEGGCGACVVLL 55 (1344)
T ss_pred EEEEE--CCEEEEeccCCCCCcHHHHHHHhhCCCCcCCCCCCCcCCCcEEEE
Confidence 55554 6877777 589999999999975 75 589999999999999988
No 58
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=94.16 E-value=0.076 Score=55.35 Aligned_cols=43 Identities=23% Similarity=0.440 Sum_probs=36.2
Q ss_pred CCcEE-EEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEe
Q 029951 72 RGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 72 ~G~~~-~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
||+.+ ...++++++||+.++.. |+ ....+|+.|.||.|.|.|-
T Consensus 8 Ng~~~~~~~~~~~~~ll~~LR~~~~l~gtk~gC~~G~CGaCtV~~~ 53 (1330)
T TIGR02969 8 NGRKVVEKNVDPETMLLPYLRKKLRLTGTKYGCGGGGCGACTVMIS 53 (1330)
T ss_pred CCEEEEeccCCCCCcHHHHHHhhcCCCCCCCCcCCCCCCCcEEEEC
Confidence 57654 45789999999999974 75 5899999999999999873
No 59
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=93.02 E-value=0.14 Score=48.74 Aligned_cols=42 Identities=19% Similarity=0.502 Sum_probs=36.5
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCCCCCCCC------cccccCceEEEec
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNITLPFACR------HGCCTSCAVRIKS 115 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~------~G~CGtC~V~v~~ 115 (185)
+| +.+.+++|.|+|+|+...|++||.-|. .|.|..|.|.|..
T Consensus 38 d~--~~v~v~pg~tvlqac~~~gv~iprfcyh~rlsvagncrmclvevek 85 (708)
T KOG2282|consen 38 DD--QSVMVEPGTTVLQACAKVGVDIPRFCYHERLSVAGNCRMCLVEVEK 85 (708)
T ss_pred CC--eeEeeCCCcHHHHHHHHhCCCcchhhhhhhhhhccceeEEEEEecc
Confidence 56 789999999999999999999999997 5778888777643
No 60
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.80 E-value=0.94 Score=45.84 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=53.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCC-----------CCCCcccccCceEEEecCccCCcccCCCChhhhc
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP-----------FACRHGCCTSCAVRIKSGQIKQPEALGISAELKS 132 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip-----------~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~ 132 (185)
.|+|.. +| +.+++.+|+||..|+..+|+.+- --|..|.|-.|.|.|-.|...
T Consensus 12 ~~~~~~--dg--~~~~~~~g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~------------- 74 (985)
T TIGR01372 12 PLRFTF--DG--KSYSGFAGDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQR------------- 74 (985)
T ss_pred eEEEEE--CC--EEeecCCCCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCC-------------
Confidence 555655 68 89999999999999999997642 136677789999998433110
Q ss_pred CCeEEeeeeEECCCeEEEcCC
Q 029951 133 KGYALLCVGYPSSDVEVETQD 153 (185)
Q Consensus 133 ~g~rLaCqa~p~sDl~Iel~~ 153 (185)
..-+.+|++.....|+|+...
T Consensus 75 ~~~~~ac~~~~~~gm~~~~~~ 95 (985)
T TIGR01372 75 EPNTRATTQELYDGLVATSQN 95 (985)
T ss_pred CCCccceeEEcccCCEEeccc
Confidence 112568999888888887754
No 61
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=89.10 E-value=0.4 Score=41.19 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=25.4
Q ss_pred CCchHHHHHHHCCC------CCCCCCCcccccCceEEE
Q 029951 82 EDQYILHTAESQNI------TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 82 ~g~tLLdaa~~~GI------~ip~~C~~G~CGtC~V~v 113 (185)
-|.-+|||+.+-.- ....+||.|+||+|...|
T Consensus 75 CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI 112 (288)
T KOG3049|consen 75 CGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI 112 (288)
T ss_pred cchHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence 45689999976432 357899999999999877
No 62
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=81.08 E-value=3.9 Score=37.97 Aligned_cols=50 Identities=18% Similarity=0.331 Sum_probs=37.5
Q ss_pred ceEEEEEeCCCCcEEE-EEeCCCchHHHHHH-HCCC-CCCCCCCcccccCceEEE
Q 029951 62 THKVTVHDRFRGVVHE-FLVPEDQYILHTAE-SQNI-TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~-~~v~~g~tLLdaa~-~~GI-~ip~~C~~G~CGtC~V~v 113 (185)
+..|+|.. +|+.++ -.+++..||||.++ +.+. .-.-.|..|-||.|.|.|
T Consensus 6 ~~~irf~l--N~~~~~l~~v~P~~TlLd~LR~d~~ltGtKEGCAEGDCGACTVlV 58 (493)
T COG4630 6 RNTIRFLL--NGETRVLSDVPPTTTLLDYLRLDRRLTGTKEGCAEGDCGACTVLV 58 (493)
T ss_pred cceeEEEe--cCceEEeecCCcchHHHHHHHHhcccccccccccCCCcCceEEEE
Confidence 34566665 464333 45789999999998 6665 367899999999999866
No 63
>PLN02906 xanthine dehydrogenase
Probab=80.20 E-value=1.7 Score=45.55 Aligned_cols=32 Identities=22% Similarity=0.535 Sum_probs=28.1
Q ss_pred CchHHHHHHHCCC-CCCCCCCcccccCceEEEe
Q 029951 83 DQYILHTAESQNI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 83 g~tLLdaa~~~GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
+++||+.+++.|+ ....+|+.|.||.|.|.|-
T Consensus 1 ~~~ll~~LR~~~l~g~k~gC~~g~CGaCtv~~~ 33 (1319)
T PLN02906 1 HQTLLEYLRDLGLTGTKLGCGEGGCGACTVMVS 33 (1319)
T ss_pred CCcHHHHHHhCCCCCCCCCcCCCCCCCeEEEEC
Confidence 4689999998775 5899999999999999885
No 64
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=78.01 E-value=1.5 Score=36.76 Aligned_cols=31 Identities=13% Similarity=0.514 Sum_probs=23.0
Q ss_pred hHHHHHHHCCCCC------CCCCCcccccCceEEEec
Q 029951 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKS 115 (185)
Q Consensus 85 tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v~~ 115 (185)
.+.+++.++|++. ...||.|.||+|.+.+..
T Consensus 195 ~v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~ 231 (250)
T PRK00054 195 KVVEILKEKKVPAYVSLERRMKCGIGACGACVCDTET 231 (250)
T ss_pred HHHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCC
Confidence 3556667788642 458999999999998643
No 65
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=74.81 E-value=2.8 Score=35.10 Aligned_cols=29 Identities=17% Similarity=0.344 Sum_probs=22.9
Q ss_pred hHHHHHHHCCCCC------CCCCCcccccCceEEE
Q 029951 85 YILHTAESQNITL------PFACRHGCCTSCAVRI 113 (185)
Q Consensus 85 tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (185)
.+.+.+.+.|++. ...||.|.|+.|.++.
T Consensus 194 ~~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~ 228 (248)
T cd06219 194 AVSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTV 228 (248)
T ss_pred HHHHHHHHcCCCEEEEecccccCccceeeeEEEEe
Confidence 3556667788863 5789999999999985
No 66
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=74.68 E-value=1.9 Score=37.22 Aligned_cols=33 Identities=15% Similarity=0.455 Sum_probs=25.8
Q ss_pred chHHHHHHHCCCC---------CCCCCCcccccCceEEEecC
Q 029951 84 QYILHTAESQNIT---------LPFACRHGCCTSCAVRIKSG 116 (185)
Q Consensus 84 ~tLLdaa~~~GI~---------ip~~C~~G~CGtC~V~v~~G 116 (185)
+.+.+.+.+.|++ -...||.|.||.|+|....|
T Consensus 225 ~~v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~ 266 (289)
T PRK08345 225 KFVFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTS 266 (289)
T ss_pred HHHHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCc
Confidence 4577778888885 35689999999999986554
No 67
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=71.83 E-value=4.2 Score=34.06 Aligned_cols=31 Identities=26% Similarity=0.591 Sum_probs=24.2
Q ss_pred hHHHHHHHCCCCC------CCCCCcccccCceEEEec
Q 029951 85 YILHTAESQNITL------PFACRHGCCTSCAVRIKS 115 (185)
Q Consensus 85 tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v~~ 115 (185)
.+.+.+++.|++. ...|+.|.||.|+....+
T Consensus 194 ~~~~~L~~~Gv~~~~~~~~~~~~~~g~c~~c~~~~~~ 230 (246)
T cd06218 194 AVAELAAERGVPCQVSLEERMACGIGACLGCVVKTKD 230 (246)
T ss_pred HHHHHHHhcCCCEEEEecccccCccceecccEEEeec
Confidence 4566677788863 568999999999998754
No 68
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=71.78 E-value=2.3 Score=26.63 Aligned_cols=18 Identities=44% Similarity=1.071 Sum_probs=13.8
Q ss_pred CCCCcccccCceEEEecC
Q 029951 99 FACRHGCCTSCAVRIKSG 116 (185)
Q Consensus 99 ~~C~~G~CGtC~V~v~~G 116 (185)
-.|+-|.|+.|.+...++
T Consensus 4 M~CG~G~C~~C~v~~~~~ 21 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDG 21 (40)
T ss_dssp -SSSSSSS-TTEEECSST
T ss_pred ccCCCcEeCCcEeeeecC
Confidence 469999999999988654
No 69
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=71.06 E-value=3.2 Score=34.30 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=23.1
Q ss_pred hHHHHHHHCCCC------CCCCCCcccccCceEEEe
Q 029951 85 YILHTAESQNIT------LPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 85 tLLdaa~~~GI~------ip~~C~~G~CGtC~V~v~ 114 (185)
.+.+++++.|++ --..|+.|.||.|.|...
T Consensus 181 ~~~~~L~~~g~~~~i~~e~f~~cg~g~C~~C~v~~~ 216 (233)
T cd06220 181 KVLEILDERGVRAQFSLERYMKCGIGICGSCCIDPT 216 (233)
T ss_pred HHHHHHHhcCCcEEEEecccccCcCCCcCccEeccC
Confidence 566677778873 235899999999999874
No 70
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=65.61 E-value=4.3 Score=34.16 Aligned_cols=28 Identities=14% Similarity=0.532 Sum_probs=22.5
Q ss_pred hHHHHHHHCCCC---C------CCCCCcccccCceEE
Q 029951 85 YILHTAESQNIT---L------PFACRHGCCTSCAVR 112 (185)
Q Consensus 85 tLLdaa~~~GI~---i------p~~C~~G~CGtC~V~ 112 (185)
.+.+++++.|++ | .-.|+.|.||+|+|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~ 240 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG 240 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC
Confidence 567788888886 2 357889999999986
No 71
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=64.98 E-value=5.6 Score=34.15 Aligned_cols=28 Identities=18% Similarity=0.402 Sum_probs=22.1
Q ss_pred HHHHHHHCCCCC------CCCCCcccccCceEEE
Q 029951 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (185)
Q Consensus 86 LLdaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (185)
+.+.+.+.|+++ .-.||.|.|+.|.+..
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~ 229 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTV 229 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEE
Confidence 556677788753 5689999999999975
No 72
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=64.88 E-value=13 Score=24.71 Aligned_cols=28 Identities=7% Similarity=0.216 Sum_probs=22.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
+|+| +| +.++++++.||.+++...|++.
T Consensus 2 ~i~v----NG--~~~~~~~~~tl~~lL~~l~~~~ 29 (66)
T PRK05659 2 NIQL----NG--EPRELPDGESVAALLAREGLAG 29 (66)
T ss_pred EEEE----CC--eEEEcCCCCCHHHHHHhcCCCC
Confidence 4566 47 6788899999999999998753
No 73
>PRK01777 hypothetical protein; Validated
Probab=64.12 E-value=22 Score=26.22 Aligned_cols=23 Identities=4% Similarity=0.068 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHCCCCCC
Q 029951 76 HEFLVPEDQYILHTAESQNITLP 98 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip 98 (185)
..+++++|.|+.+++.+.||...
T Consensus 19 ~~l~vp~GtTv~dal~~sgi~~~ 41 (95)
T PRK01777 19 QRLTLQEGATVEEAIRASGLLEL 41 (95)
T ss_pred EEEEcCCCCcHHHHHHHcCCCcc
Confidence 57889999999999999998654
No 74
>PRK05802 hypothetical protein; Provisional
Probab=61.23 E-value=5.8 Score=35.09 Aligned_cols=28 Identities=32% Similarity=0.790 Sum_probs=21.6
Q ss_pred HHHHHHH--CCCCC------CCCCCcccccCceEEE
Q 029951 86 ILHTAES--QNITL------PFACRHGCCTSCAVRI 113 (185)
Q Consensus 86 LLdaa~~--~GI~i------p~~C~~G~CGtC~V~v 113 (185)
+.+.+.+ .||.+ .-.||.|.||.|.++.
T Consensus 269 v~~~l~~~~~~i~~~~Sle~~M~CG~G~Cg~C~v~~ 304 (320)
T PRK05802 269 IIEYLDKLNEKIKLSCSNNAKMCCGEGICGACTVRY 304 (320)
T ss_pred HHHHHhhhcCCceEEEeCCCeeeCcCccCCeeEEEE
Confidence 4455555 67765 6789999999999986
No 75
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=59.79 E-value=5.7 Score=33.77 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=21.8
Q ss_pred hHHHHHHHCCCC---------CCCCCCcccccCceEE
Q 029951 85 YILHTAESQNIT---------LPFACRHGCCTSCAVR 112 (185)
Q Consensus 85 tLLdaa~~~GI~---------ip~~C~~G~CGtC~V~ 112 (185)
.+.+.+++.|++ -.-.|+.|.||+|++.
T Consensus 206 ~~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 206 FTVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 456677788885 3468999999999976
No 76
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.31 E-value=9.6 Score=37.32 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=23.2
Q ss_pred HHHHHHHCCCCC------CCCCCcccccCceEEE
Q 029951 86 ILHTAESQNITL------PFACRHGCCTSCAVRI 113 (185)
Q Consensus 86 LLdaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (185)
+.+.+.+.|++. .-.||.|.||.|.+..
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~ 229 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTV 229 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEe
Confidence 556777888886 7899999999999964
No 77
>PRK07440 hypothetical protein; Provisional
Probab=53.83 E-value=38 Score=23.32 Aligned_cols=30 Identities=7% Similarity=0.036 Sum_probs=23.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
+.+|++ +| +.++++++.||.+.+...|+..
T Consensus 4 ~m~i~v----NG--~~~~~~~~~tl~~lL~~l~~~~ 33 (70)
T PRK07440 4 PITLQV----NG--ETRTCSSGTSLPDLLQQLGFNP 33 (70)
T ss_pred ceEEEE----CC--EEEEcCCCCCHHHHHHHcCCCC
Confidence 355666 57 6788899999999999988754
No 78
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=53.77 E-value=29 Score=23.73 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
|.+.+|++... +....++++++.|+.+.+...|++.
T Consensus 2 ~~mm~v~vng~--~~~~~~~~~~~~tv~~ll~~l~~~~ 37 (70)
T PRK08364 2 MLMIRVKVIGR--GIEKEIEWRKGMKVADILRAVGFNT 37 (70)
T ss_pred ceEEEEEEecc--ccceEEEcCCCCcHHHHHHHcCCCC
Confidence 55677777531 2235788899999999999998753
No 79
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=53.08 E-value=5.5 Score=33.80 Aligned_cols=27 Identities=19% Similarity=0.489 Sum_probs=20.3
Q ss_pred HHHHHHHCCCCC---------CCCCCcccccCceEE
Q 029951 86 ILHTAESQNITL---------PFACRHGCCTSCAVR 112 (185)
Q Consensus 86 LLdaa~~~GI~i---------p~~C~~G~CGtC~V~ 112 (185)
+.+.+.+.|++- .-.|+.|.||.|+|.
T Consensus 205 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 240 (261)
T TIGR02911 205 TVQELLKKGIKEENIWVSYERKMCCGVGKCGHCKID 240 (261)
T ss_pred HHHHHHHcCCCHHHEEEEeccceeccCcCCCCcccC
Confidence 455667788752 347999999999875
No 80
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=49.92 E-value=27 Score=36.58 Aligned_cols=35 Identities=20% Similarity=0.519 Sum_probs=29.6
Q ss_pred eCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEe
Q 029951 80 VPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 80 v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
++++.||+..++.. |+ .....|+.|.||.|.|.|-
T Consensus 17 vdP~~TL~~fLR~k~~ltgtKlgC~EGGCGaCtv~ls 53 (1257)
T KOG0430|consen 17 LPPDLTLNTFLREKLGLTGTKLGCGEGGCGACTVVLS 53 (1257)
T ss_pred CCcchhHHHHHHHhcCCcceeeccCCCCccceEEEEe
Confidence 68899999999765 54 4789999999999999774
No 81
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=49.91 E-value=40 Score=22.61 Aligned_cols=28 Identities=18% Similarity=0.115 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
+|++ +| ...+++++.||.+.+...|++.
T Consensus 2 ~i~v----NG--~~~~~~~~~tl~~ll~~l~~~~ 29 (65)
T PRK05863 2 IVVV----NE--EQVEVDEQTTVAALLDSLGFPE 29 (65)
T ss_pred EEEE----CC--EEEEcCCCCcHHHHHHHcCCCC
Confidence 5666 47 5677889999999999998854
No 82
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=48.77 E-value=10 Score=31.35 Aligned_cols=16 Identities=31% Similarity=1.041 Sum_probs=14.2
Q ss_pred CCCCCcccccCceEEE
Q 029951 98 PFACRHGCCTSCAVRI 113 (185)
Q Consensus 98 p~~C~~G~CGtC~V~v 113 (185)
...|+.|.||.|.+..
T Consensus 213 ~m~Cg~G~C~~C~~~~ 228 (243)
T cd06192 213 PMCCGIGICGACTIET 228 (243)
T ss_pred cccCccccccceEEEe
Confidence 5689999999999975
No 83
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=48.26 E-value=32 Score=24.13 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=19.1
Q ss_pred CCcEEEEEeCCCchHHHHHHHC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ 93 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~ 93 (185)
+|+...+.+.+|+||.|++..+
T Consensus 8 ng~~t~V~vrpg~ti~d~L~~~ 29 (72)
T cd01760 8 NGQRTVVPVRPGMSVRDVLAKA 29 (72)
T ss_pred CCCeEEEEECCCCCHHHHHHHH
Confidence 6888899999999999988754
No 84
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=47.15 E-value=47 Score=23.90 Aligned_cols=32 Identities=3% Similarity=0.105 Sum_probs=25.0
Q ss_pred CCCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 59 SIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 59 ~~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
.|.+.+|+| +| ...+++++.||.+.+...+++
T Consensus 15 ~~~~m~I~V----NG--~~~~~~~~~tl~~LL~~l~~~ 46 (84)
T PRK06083 15 AMVLITISI----ND--QSIQVDISSSLAQIIAQLSLP 46 (84)
T ss_pred CCceEEEEE----CC--eEEEcCCCCcHHHHHHHcCCC
Confidence 356677877 47 677889999999999987764
No 85
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=41.64 E-value=52 Score=21.59 Aligned_cols=27 Identities=4% Similarity=0.203 Sum_probs=21.9
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+|+| +| ..++++++.||.+++...|+.
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~ 28 (65)
T PRK06944 2 DIQL----NQ--QTLSLPDGATVADALAAYGAR 28 (65)
T ss_pred EEEE----CC--EEEECCCCCcHHHHHHhhCCC
Confidence 4566 47 678889999999999998875
No 86
>PF03990 DUF348: Domain of unknown function (DUF348) ; InterPro: IPR007137 This domain normally occurs as tandem repeats; however it is found as a single copy in the Saccharomyces cerevisiae (Baker's yeast) DNA-binding nuclear protein YCR593 (P25357 from SWISSPROT).
Probab=40.71 E-value=81 Score=19.45 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=22.3
Q ss_pred EEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCC
Q 029951 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP 98 (185)
Q Consensus 65 Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip 98 (185)
|+|.. +|+.+.+. ....|+-+++.++||.+.
T Consensus 2 Vtv~~--dG~~~~v~-T~a~tV~~~L~~~gI~l~ 32 (43)
T PF03990_consen 2 VTVTV--DGKEKTVY-TTASTVGDALKELGITLG 32 (43)
T ss_pred EEEEE--CCEEEEEE-eCCCCHHHHHHhCCCCCC
Confidence 45554 68655554 456899999999999873
No 87
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=40.06 E-value=30 Score=25.19 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.3
Q ss_pred EEEEEeCCCchHHHHHHHCCCC
Q 029951 75 VHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
...+++++|.|+.+|+++.|+.
T Consensus 15 ~~~l~vp~GtTv~~Ai~~Sgi~ 36 (84)
T PF03658_consen 15 ILTLEVPEGTTVAQAIEASGIL 36 (84)
T ss_dssp EEEEEEETT-BHHHHHHHHTHH
T ss_pred EEEEECCCcCcHHHHHHHcCch
Confidence 3568899999999999999984
No 88
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=39.15 E-value=26 Score=35.77 Aligned_cols=29 Identities=14% Similarity=0.338 Sum_probs=23.0
Q ss_pred hHHHHHHHCCCCC------CCCCCcccccCceEEE
Q 029951 85 YILHTAESQNITL------PFACRHGCCTSCAVRI 113 (185)
Q Consensus 85 tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v 113 (185)
.+.+.+++.|++. ...|+-|.||.|.+.+
T Consensus 861 av~~~l~~~Gv~~~vSlE~~M~CG~G~C~~C~v~~ 895 (944)
T PRK12779 861 AVSDLTKPYGVKTVASLNSIMVDATGMCGACMVPV 895 (944)
T ss_pred HHHHHHHHcCCCeEEeecccccCCCeeeCeeeeee
Confidence 3556667788864 5789999999999985
No 89
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=35.42 E-value=92 Score=20.79 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=22.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
+|+| +| +.++++++.||.+.+...++..
T Consensus 2 ~i~v----Ng--~~~~~~~~~tl~~ll~~l~~~~ 29 (66)
T PRK08053 2 QILF----ND--QPMQCAAGQTVHELLEQLNQLQ 29 (66)
T ss_pred EEEE----CC--eEEEcCCCCCHHHHHHHcCCCC
Confidence 4566 47 6788899999999999887754
No 90
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=34.13 E-value=1e+02 Score=21.29 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=28.4
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQP 121 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~ 121 (185)
+| +.++++++.|+.|.+.+.|+... .+ +-.+.|++-++
T Consensus 8 ng--~~~e~~~~~tv~dLL~~l~~~~~---------~v-av~vNg~iVpr 45 (68)
T COG2104 8 NG--KEVEIAEGTTVADLLAQLGLNPE---------GV-AVAVNGEIVPR 45 (68)
T ss_pred CC--EEEEcCCCCcHHHHHHHhCCCCc---------eE-EEEECCEEccc
Confidence 46 78899999999999999998762 22 33457777653
No 91
>smart00455 RBD Raf-like Ras-binding domain.
Probab=32.48 E-value=98 Score=21.32 Aligned_cols=22 Identities=5% Similarity=-0.077 Sum_probs=18.7
Q ss_pred CCcEEEEEeCCCchHHHHHHHC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ 93 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~ 93 (185)
+|+...+.+.+|.||.|+++..
T Consensus 8 ~~~~~~V~vrpg~tl~e~L~~~ 29 (70)
T smart00455 8 DNQRTVVKVRPGKTVRDALAKA 29 (70)
T ss_pred CCCEEEEEECCCCCHHHHHHHH
Confidence 6877889999999999988653
No 92
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=30.31 E-value=23 Score=36.62 Aligned_cols=34 Identities=21% Similarity=0.691 Sum_probs=25.6
Q ss_pred CCCCCC-cccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECCCe
Q 029951 97 LPFACR-HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSDV 147 (185)
Q Consensus 97 ip~~C~-~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~sDl 147 (185)
-+-.|. +|.||.|++++ .|+ ..++++|.- +.-|+
T Consensus 970 s~M~c~m~giC~qC~~~~-~G~---------------~k~vfaC~~-~~~~~ 1004 (1028)
T PRK06567 970 SSMQCMMKGICGQCIQKV-KGE---------------QKYIFACSQ-QNQNA 1004 (1028)
T ss_pred cHHHHHhhhhhhhheEEe-cCe---------------eEEEEEecC-CCCch
Confidence 467899 99999999998 432 347899988 55443
No 93
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=27.07 E-value=1.2e+02 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=19.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
+|+|.. .|+.+.+++++++|+.+.
T Consensus 2 ~i~vk~--~g~~~~v~v~~~~Tv~~l 25 (74)
T cd01813 2 PVIVKW--GGQEYSVTTLSEDTVLDL 25 (74)
T ss_pred EEEEEE--CCEEEEEEECCCCCHHHH
Confidence 566766 588889999999999764
No 94
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=26.09 E-value=1.8e+02 Score=20.00 Aligned_cols=22 Identities=14% Similarity=0.012 Sum_probs=17.9
Q ss_pred CCcEEEEEeCCCchHHHHHHHC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQ 93 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~ 93 (185)
+|+...+.+.+|.||-|++...
T Consensus 9 ~~q~t~V~vrpg~ti~d~L~~~ 30 (71)
T PF02196_consen 9 NGQRTVVQVRPGMTIRDALSKA 30 (71)
T ss_dssp TTEEEEEEE-TTSBHHHHHHHH
T ss_pred CCCEEEEEEcCCCCHHHHHHHH
Confidence 6888889999999999988654
No 95
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=25.25 E-value=89 Score=22.21 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=25.8
Q ss_pred CCcEEEEEeCCCchHHHHHHH----CCCCCCCCCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAES----QNITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~----~GI~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
||+...+.+.+|+||-|++.+ .|+. ...|.+.+..|+
T Consensus 8 dg~~T~V~vrpG~ti~d~L~kllekRgl~---------~~~~~vf~~g~~ 48 (73)
T cd01817 8 DGSTTVVPTRPGESIRDLLSGLCEKRGIN---------YAAVDLFLVGGD 48 (73)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHHcCCC---------hhHEEEEEecCC
Confidence 688888999999999887754 4443 234667666443
No 96
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=24.89 E-value=1.2e+02 Score=21.60 Aligned_cols=24 Identities=8% Similarity=-0.014 Sum_probs=20.7
Q ss_pred EEEEEeCCCchHHHHHHHCCCCCC
Q 029951 75 VHEFLVPEDQYILHTAESQNITLP 98 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~GI~ip 98 (185)
.....+.++.||-+.+++.||+..
T Consensus 24 ~~~~~~~~~~tvkd~IEsLGVP~t 47 (81)
T PF14451_consen 24 PFTHPFDGGATVKDVIESLGVPHT 47 (81)
T ss_pred ceEEecCCCCcHHHHHHHcCCChH
Confidence 356788999999999999999864
No 97
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=24.66 E-value=56 Score=33.58 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=21.1
Q ss_pred HHHHHHHCCCC------CCCCCCcccccCceEEE
Q 029951 86 ILHTAESQNIT------LPFACRHGCCTSCAVRI 113 (185)
Q Consensus 86 LLdaa~~~GI~------ip~~C~~G~CGtC~V~v 113 (185)
+.+.++..||+ -...|+.|.||.|+|.+
T Consensus 196 v~~~~~~~gi~~~vSle~~M~cG~G~Cg~C~v~~ 229 (1006)
T PRK12775 196 CVETTRPFGVKTMVSLNAIMVDGTGMCGSCRVTV 229 (1006)
T ss_pred HHHHHHHCCCcEEECChhheeCccceeCCCEeee
Confidence 44555667873 34689999999999975
No 98
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=23.63 E-value=1.7e+02 Score=20.12 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=21.1
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
+.+|+|... .|+...++++++.|+.+.
T Consensus 1 ~~~i~vkt~-~Gk~~~~~v~~~~TV~~L 27 (73)
T cd01791 1 MIEVVCNDR-LGKKVRVKCNPDDTIGDL 27 (73)
T ss_pred CEEEEEECC-CCCEEEEEeCCCCcHHHH
Confidence 357888874 587788899999998875
No 99
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=22.68 E-value=1.9e+02 Score=19.46 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=21.0
Q ss_pred EEEEEeCCCCcEEEEEeCCC-chHHHHHHHCCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPED-QYILHTAESQNITL 97 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g-~tLLdaa~~~GI~i 97 (185)
+|++ +| ...+++++ .||.+.+...|+..
T Consensus 2 ~I~v----NG--~~~~~~~~~~tv~~lL~~l~~~~ 30 (67)
T PRK07696 2 NLKI----NG--NQIEVPESVKTVAELLTHLELDN 30 (67)
T ss_pred EEEE----CC--EEEEcCCCcccHHHHHHHcCCCC
Confidence 4556 47 56778888 68999999888753
No 100
>PF10531 SLBB: SLBB domain; InterPro: IPR019554 The soluble ligand-binding beta-grasp domain (SLBB) contains a beta-grasp fold. They are found in a diverse set of proteins that include the animal vitamin B12 uptake proteins; transcobalamin, intrinsic factor and the bacterial polysaccharide export proteins []. Some proteins may be part of a membrane complex involved in electron transport, others are probably involved in the export of the extracellular polysaccharide colanic acid from the cell to medium.; PDB: 3IAS_S 2FUG_A 3I9V_A 3M9S_1 3IAM_A 2YBB_1 2W8I_E 2W8H_E 2J58_D.
Probab=22.42 E-value=67 Score=20.95 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=18.4
Q ss_pred EEEEeCCCchHHHHHHHCCCCCCC
Q 029951 76 HEFLVPEDQYILHTAESQNITLPF 99 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~ip~ 99 (185)
-.++++.|.||.|++..+|=..+.
T Consensus 12 G~~~~~~g~tl~~~i~~AGG~~~~ 35 (59)
T PF10531_consen 12 GTYELPPGTTLSDAIAQAGGLTPR 35 (59)
T ss_dssp EEEEEETT-BHHHHHHCTTSBBTT
T ss_pred EEEEECCCCcHHHHHHHhCCCCCC
Confidence 478889999999999998855443
No 101
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=21.86 E-value=1.4e+02 Score=19.67 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=19.9
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+| +.++.+++.||.+.+...+++
T Consensus 4 Ng--~~~~~~~~~tv~~ll~~l~~~ 26 (64)
T TIGR01683 4 NG--EPVEVEDGLTLAALLESLGLD 26 (64)
T ss_pred CC--eEEEcCCCCcHHHHHHHcCCC
Confidence 46 678889999999999999876
No 102
>PRK06437 hypothetical protein; Provisional
Probab=21.21 E-value=1.7e+02 Score=19.80 Aligned_cols=24 Identities=0% Similarity=0.039 Sum_probs=20.4
Q ss_pred CcEEEEEeCCCchHHHHHHHCCCC
Q 029951 73 GVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 73 G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+..+.++++++.|+.+.+.+.|++
T Consensus 10 ~~~~~~~i~~~~tv~dLL~~Lgi~ 33 (67)
T PRK06437 10 HINKTIEIDHELTVNDIIKDLGLD 33 (67)
T ss_pred CcceEEEcCCCCcHHHHHHHcCCC
Confidence 344788999999999999999875
No 103
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=20.92 E-value=77 Score=27.37 Aligned_cols=19 Identities=42% Similarity=0.536 Sum_probs=15.9
Q ss_pred CCCcEEEEEeCCCchHHHHHH
Q 029951 71 FRGVVHEFLVPEDQYILHTAE 91 (185)
Q Consensus 71 ~~G~~~~~~v~~g~tLLdaa~ 91 (185)
.+| +.+.+.+|+||||+++
T Consensus 248 ~s~--~~~~~~~g~t~lea~~ 266 (266)
T COG1018 248 RSG--KEVRVPPGQTLLEAAE 266 (266)
T ss_pred ccc--ceEecCCCchHHHhhC
Confidence 356 7899999999999874
No 104
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=20.60 E-value=1.6e+02 Score=19.42 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=25.4
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCc
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
+| ...+.+.|.|.+|+|..-+ .+.-..|..-.+.|+
T Consensus 7 dG--~~~~~~~g~T~~d~A~~I~--------~~l~~~~~~A~Vng~ 42 (60)
T PF02824_consen 7 DG--SIKELPEGSTVLDVAYSIH--------SSLAKRAVAAKVNGQ 42 (60)
T ss_dssp TS--CEEEEETTBBHHHHHHHHS--------HHHHHCEEEEEETTE
T ss_pred CC--CeeeCCCCCCHHHHHHHHC--------HHHHhheeEEEEcCE
Confidence 68 5667999999999999875 334444445455664
No 105
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=20.49 E-value=2e+02 Score=18.89 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=19.6
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+| +.++++++.|+.+.+...++.
T Consensus 5 Ng--~~~~~~~~~tv~~ll~~l~~~ 27 (65)
T cd00565 5 NG--EPREVEEGATLAELLEELGLD 27 (65)
T ss_pred CC--eEEEcCCCCCHHHHHHHcCCC
Confidence 46 678889999999999999865
Done!