Query 029951
Match_columns 185
No_of_seqs 235 out of 1191
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iue_A Ferredoxin; electron tr 99.9 9.8E-24 3.4E-28 154.6 10.4 95 62-158 2-96 (98)
2 1czp_A Ferredoxin I; [2Fe-2S] 99.9 1.1E-23 3.7E-28 154.2 10.2 96 62-158 2-98 (98)
3 1frr_A Ferredoxin I; electron 99.9 1.2E-23 4.2E-28 152.4 9.9 94 62-157 1-94 (95)
4 1frd_A Heterocyst [2Fe-2S] fer 99.9 1.5E-23 5.2E-28 153.1 10.4 96 62-157 2-97 (98)
5 1a70_A Ferredoxin; iron-sulfur 99.9 1.6E-23 5.3E-28 153.3 10.0 95 62-158 2-96 (97)
6 1awd_A Ferredoxin; electron tr 99.9 2.4E-23 8.2E-28 151.3 10.8 94 63-158 1-94 (94)
7 1wri_A Ferredoxin II, ferredox 99.9 5E-23 1.7E-27 149.5 10.0 92 62-156 1-92 (93)
8 1jq4_A Methane monooxygenase c 99.9 1.1E-22 3.8E-27 148.6 5.7 92 61-153 3-96 (98)
9 3lxf_A Ferredoxin; iron, iron- 99.8 5.8E-22 2E-26 147.2 5.4 91 64-155 2-104 (104)
10 3hui_A Ferredoxin; cytochrome 99.8 7.1E-22 2.4E-26 152.1 5.9 97 58-155 17-125 (126)
11 2y5c_A Adrenodoxin-like protei 99.8 1.4E-21 4.8E-26 145.6 5.0 94 61-155 4-108 (109)
12 3ah7_A [2Fe-2S]ferredoxin; [2F 99.8 2.5E-21 8.6E-26 144.9 6.4 93 62-155 1-104 (113)
13 1xlq_A Putidaredoxin, PDX; [2F 99.8 2.1E-21 7.2E-26 143.7 5.5 91 64-155 2-105 (106)
14 2bt6_A Adrenodoxin 1; rutheniu 99.8 1.9E-21 6.6E-26 144.5 5.1 91 61-152 5-108 (108)
15 1uwm_A Ferredoxin VI, FDVI; el 99.8 2.5E-21 8.7E-26 143.2 4.5 91 64-155 2-105 (106)
16 2wlb_A ETP1-FD, electron trans 99.8 5.9E-21 2E-25 140.6 6.3 91 61-152 2-103 (103)
17 1krh_A Benzoate 1,2-dioxygenas 99.8 2.5E-20 8.5E-25 160.7 10.9 95 60-155 1-99 (338)
18 1b9r_A Protein (terpredoxin); 99.8 1E-21 3.5E-26 145.1 1.2 90 64-154 2-104 (105)
19 1doi_A 2Fe-2S ferredoxin; halo 99.8 1.8E-20 6E-25 144.5 6.0 87 62-152 27-116 (128)
20 1i7h_A Ferredoxin; 2Fe-2S,elec 99.8 5.9E-20 2E-24 137.2 7.3 92 63-155 2-104 (111)
21 2pia_A Phthalate dioxygenase r 99.8 1.1E-19 3.9E-24 156.3 9.3 101 45-151 215-321 (321)
22 3zyy_X Iron-sulfur cluster bin 99.8 8.4E-20 2.9E-24 171.8 8.9 96 60-159 1-97 (631)
23 1l5p_A Ferredoxin; [2Fe-2S] cl 99.8 1.7E-19 5.9E-24 130.9 5.9 83 64-150 2-92 (93)
24 3n9z_C Adrenodoxin; cytochrome 99.7 1.6E-19 5.3E-24 138.4 -2.0 95 60-155 3-110 (123)
25 1t3q_A Quinoline 2-oxidoreduct 98.8 2.3E-08 7.8E-13 79.7 8.1 68 64-151 11-82 (168)
26 3i9v_3 NADH-quinone oxidoreduc 98.7 1E-08 3.6E-13 98.1 7.1 85 63-153 2-97 (783)
27 3c8y_A Iron hydrogenase 1; dit 98.5 2.7E-07 9.3E-12 85.7 8.3 68 65-153 2-76 (574)
28 1kf6_B Fumarate reductase iron 98.5 2.4E-07 8.2E-12 76.6 6.5 60 75-152 25-93 (243)
29 1rm6_C 4-hydroxybenzoyl-COA re 98.3 1.5E-06 5.3E-11 68.8 7.5 67 64-150 4-74 (161)
30 2bs2_B Quinol-fumarate reducta 98.3 4.7E-07 1.6E-11 74.9 4.5 59 75-151 25-93 (241)
31 3hrd_D Nicotinate dehydrogenas 98.3 1.9E-06 6.5E-11 68.5 7.4 51 61-113 2-54 (160)
32 1n62_A Carbon monoxide dehydro 98.2 2.9E-06 9.9E-11 67.7 7.5 65 60-144 1-67 (166)
33 1ffv_A CUTS, iron-sulfur prote 98.2 3E-06 1E-10 67.5 7.5 64 61-144 2-67 (163)
34 2wdq_B Succinate dehydrogenase 98.1 2.4E-06 8.3E-11 70.3 4.5 41 76-117 23-70 (238)
35 2h88_B Succinate dehydrogenase 97.9 8.3E-06 2.8E-10 68.0 4.8 59 75-151 32-101 (252)
36 3vr8_B Iron-sulfur subunit of 97.3 0.0002 6.8E-09 61.4 4.9 42 75-117 56-104 (282)
37 3nvw_A Xanthine dehydrogenase/ 97.1 0.00058 2E-08 54.4 5.4 43 72-114 10-55 (164)
38 2w3s_A Xanthine dehydrogenase; 97.1 0.0007 2.4E-08 61.5 6.4 47 65-113 3-51 (462)
39 1vlb_A Aldehyde oxidoreductase 97.0 0.0011 3.7E-08 64.8 7.4 50 64-116 3-54 (907)
40 1dgj_A Aldehyde oxidoreductase 96.8 0.0013 4.6E-08 64.1 6.0 50 64-116 3-54 (907)
41 1y56_A Hypothetical protein PH 95.7 0.017 5.7E-07 51.7 6.4 45 64-113 15-66 (493)
42 3unc_A Xanthine dehydrogenase/ 94.5 0.039 1.3E-06 56.0 5.7 49 64-114 5-56 (1332)
43 2gag_A Heterotetrameric sarcos 91.9 0.35 1.2E-05 47.1 7.5 47 64-114 22-79 (965)
44 3zyv_A AOH1; oxidoreductase, m 91.2 0.25 8.6E-06 50.1 5.9 50 63-114 8-60 (1335)
45 1ep3_B Dihydroorotate dehydrog 54.5 5.1 0.00018 32.2 1.8 29 85-114 205-239 (262)
46 1uh6_A Ubiquitin-like 5; beta- 54.3 18 0.00062 25.9 4.5 40 57-97 23-66 (100)
47 3u30_A Ubiquitin, linear DI-ub 41.6 1.1E+02 0.0036 22.8 8.4 37 60-97 18-58 (172)
48 2l32_A Small archaeal modifier 39.0 58 0.002 21.6 4.9 24 75-98 12-35 (74)
49 1wia_A Hypothetical ubiquitin- 38.1 62 0.0021 21.7 5.1 34 58-92 3-36 (95)
50 2k02_A Ferrous iron transport 38.0 11 0.00038 26.4 1.1 26 85-110 35-65 (87)
51 3ny5_A Serine/threonine-protei 37.4 44 0.0015 24.0 4.2 50 60-115 11-60 (96)
52 3u7z_A Putative metal binding 37.3 46 0.0016 23.9 4.4 34 60-94 6-40 (101)
53 1v86_A DNA segment, CHR 7, way 37.1 75 0.0026 21.6 5.5 36 60-97 15-54 (95)
54 3plu_A Ubiquitin-like modifier 36.6 41 0.0014 23.8 4.0 29 60-89 19-47 (93)
55 1c1y_B Proto-onkogene serine/t 32.5 54 0.0019 22.5 3.9 44 65-114 4-47 (77)
56 1xn7_A Hypothetical protein YH 32.1 19 0.00065 24.4 1.5 26 85-110 35-65 (78)
57 2uyz_B Small ubiquitin-related 32.0 62 0.0021 20.7 4.1 29 60-89 1-29 (79)
58 3v6c_B Ubiquitin; structural g 31.2 97 0.0033 20.5 5.2 37 60-97 15-55 (91)
59 2k5p_A THis protein, thiamine- 31.2 44 0.0015 22.4 3.3 27 64-96 2-30 (78)
60 1wh3_A 59 kDa 2'-5'-oligoadeny 30.5 97 0.0033 20.0 5.0 36 60-96 5-44 (87)
61 1tyg_B YJBS; alpha beta barrel 29.1 48 0.0016 22.9 3.2 29 62-96 20-49 (87)
62 1rrb_A RAF-1 RBD, RAF proto-on 28.4 52 0.0018 24.0 3.4 45 64-114 20-64 (107)
63 1v5t_A 8430435I17RIK protein; 27.1 58 0.002 21.8 3.4 35 61-97 6-45 (90)
64 2kmm_A Guanosine-3',5'-BIS(dip 27.0 60 0.0021 20.5 3.3 23 72-96 9-31 (73)
65 2l05_A Serine/threonine-protei 26.8 72 0.0025 22.8 3.8 45 64-114 19-63 (95)
66 2hj1_A Hypothetical protein; s 26.8 29 0.001 24.6 1.8 34 63-96 15-48 (97)
67 3dbh_I NEDD8; cell cycle, acti 26.5 1.3E+02 0.0045 19.3 5.4 37 60-97 10-50 (88)
68 2wyq_A HHR23A, UV excision rep 26.1 1.1E+02 0.0039 19.5 4.7 28 61-89 4-31 (85)
69 1wgg_A Ubiquitin carboxyl-term 25.6 98 0.0034 21.1 4.4 37 60-98 5-46 (96)
70 2kl0_A Putative thiamin biosyn 25.5 75 0.0026 20.9 3.6 27 64-97 2-28 (73)
71 3phx_B Ubiquitin-like protein 25.3 1.1E+02 0.0038 19.4 4.5 29 61-90 3-31 (79)
72 1wxm_A A-RAF proto-oncogene se 24.8 84 0.0029 22.0 3.8 45 64-114 9-53 (86)
73 3mtn_B UBA80, ubcep1, ubiquiti 24.3 1.1E+02 0.0037 19.4 4.3 27 62-89 3-29 (85)
74 4dwf_A HLA-B-associated transc 23.7 1.1E+02 0.0037 20.0 4.2 29 61-90 4-32 (90)
75 1wgd_A Homocysteine-responsive 23.4 1.1E+02 0.0036 20.4 4.2 29 60-89 5-35 (93)
76 1e0g_A Membrane-bound lytic mu 22.5 36 0.0012 19.6 1.4 22 76-97 3-24 (48)
77 1v2y_A 3300001G02RIK protein; 22.2 1.6E+02 0.0054 20.9 5.0 28 61-89 6-33 (105)
78 2hj8_A Interferon-induced 17 k 20.5 1.4E+02 0.0048 19.6 4.3 29 61-90 3-31 (88)
79 1j8c_A Ubiquitin-like protein 20.5 2.4E+02 0.0082 20.1 6.7 29 60-90 30-58 (125)
80 1f0z_A THis protein; ubiquitin 20.1 63 0.0022 20.5 2.3 27 64-96 2-28 (66)
81 2lg4_A Aurelin; antimicrobial 25.4 22 0.00075 21.5 0.0 17 92-109 24-40 (40)
No 1
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=99.90 E-value=9.8e-24 Score=154.59 Aligned_cols=95 Identities=35% Similarity=0.675 Sum_probs=86.3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.++|+|.. +|..++|++++|+|||++++++|+.+|++|+.|.||+|+|+|++|.+.+.+...|++.++++|+||+||+
T Consensus 2 ~~~v~~~~--~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (98)
T 1iue_A 2 FYNITLRT--NDGEKKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTC 79 (98)
T ss_dssp EEEEEEEE--TTEEEEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGC
T ss_pred cEEEEEEe--CCCeEEEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeEC
Confidence 57888885 2435789999999999999999999999999999999999999999988887889988899999999999
Q ss_pred EECCCeEEEcCCcchhh
Q 029951 142 YPSSDVEVETQDEDEVY 158 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~~~ 158 (185)
++.+|++|++++.+.++
T Consensus 80 ~~~~d~~i~~~~~~~~~ 96 (98)
T 1iue_A 80 YPKSDCVIETHKEDELH 96 (98)
T ss_dssp EESSCEEEECCCHHHHH
T ss_pred EECCCeEEEeCChHhhc
Confidence 99999999999887765
No 2
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=99.90 E-value=1.1e-23 Score=154.19 Aligned_cols=96 Identities=42% Similarity=0.797 Sum_probs=85.9
Q ss_pred ceEEEEEeCCCCc-EEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeee
Q 029951 62 THKVTVHDRFRGV-VHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCV 140 (185)
Q Consensus 62 ~~~Vtv~~~~~G~-~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCq 140 (185)
.++|+|.+. +|. .++|++++|+|||++++++|+.+|++|+.|.||+|+++|++|++.+.+...|++.++++|+||+||
T Consensus 2 ~~~V~~~~~-~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq 80 (98)
T 1czp_A 2 TFKVTLINE-AEGTKHEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCV 80 (98)
T ss_dssp EEEEEEEET-TTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGG
T ss_pred ceEEEEEeC-CCCCcEEEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeee
Confidence 478999763 332 489999999999999999999999999999999999999999998877778998888999999999
Q ss_pred eEECCCeEEEcCCcchhh
Q 029951 141 GYPSSDVEVETQDEDEVY 158 (185)
Q Consensus 141 a~p~sDl~Iel~~~~~~~ 158 (185)
+++.+|++|++++.+.+|
T Consensus 81 ~~~~~d~~v~~~~~~~~~ 98 (98)
T 1czp_A 81 AYPTSDVVIQTHKEEDLY 98 (98)
T ss_dssp CEESSCEEEECCCTTTTC
T ss_pred CEECCCEEEEeccccccC
Confidence 999999999999877653
No 3
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.90 E-value=1.2e-23 Score=152.37 Aligned_cols=94 Identities=33% Similarity=0.637 Sum_probs=84.6
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
+++|+|... +| .++|++++|+|||++|+++||++|++|+.|.||+|+|+|.+|.+.+.+...|+++++++|+||+||+
T Consensus 1 ~~~v~~~~~-~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~ 78 (95)
T 1frr_A 1 AYKTVLKTP-SG-EFTLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIA 78 (95)
T ss_dssp CEEEEEEET-TE-EEEEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTC
T ss_pred CeEEEEEeC-CC-cEEEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeEC
Confidence 368888732 45 5789999999999999999999999999999999999999999988888889988889999999999
Q ss_pred EECCCeEEEcCCcchh
Q 029951 142 YPSSDVEVETQDEDEV 157 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~~ 157 (185)
++.+|++|++++.+.+
T Consensus 79 ~~~~~~~v~~~~~~~~ 94 (95)
T 1frr_A 79 IPESDLVIETHKEEEL 94 (95)
T ss_dssp EESSCEEEECCCTTTT
T ss_pred EECCCEEEEEcchhhc
Confidence 9999999999887654
No 4
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=99.90 E-value=1.5e-23 Score=153.09 Aligned_cols=96 Identities=31% Similarity=0.642 Sum_probs=85.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
+++|+|.....+..++|++++|+|||++|+++||.+|++|+.|.||+|+++|++|.+.+.+...|++.++++|+||+||+
T Consensus 2 ~~~V~~~~~~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~ 81 (98)
T 1frd_A 2 SYQVRLINKKQDIDTTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVT 81 (98)
T ss_dssp EEEEEEEETTTTEEEEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGC
T ss_pred ceEEEEEeCCCCCCEEEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeEC
Confidence 47899986322114899999999999999999999999999999999999999999988887889988889999999999
Q ss_pred EECCCeEEEcCCcchh
Q 029951 142 YPSSDVEVETQDEDEV 157 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~~ 157 (185)
++.+|++|++++++.+
T Consensus 82 ~~~~d~~v~~~~~~~~ 97 (98)
T 1frd_A 82 YPRSNCTIKTHQEPYL 97 (98)
T ss_dssp EESSSEEEECCCGGGC
T ss_pred EECCCEEEEecchhhc
Confidence 9999999999887654
No 5
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=99.90 E-value=1.6e-23 Score=153.26 Aligned_cols=95 Identities=39% Similarity=0.758 Sum_probs=85.4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.++|+|... +| .++|++++|+|||++|+++|+.++++|+.|.||+|+|+|++|.+.+.+...|++.++++|+||+||+
T Consensus 2 ~~~v~~~~~-~~-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~ 79 (97)
T 1a70_A 2 AYKVTLVTP-TG-NVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAA 79 (97)
T ss_dssp EEEEEEEET-TE-EEEEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGC
T ss_pred eEEEEEEeC-Cc-eEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeEC
Confidence 478888742 23 5789999999999999999999999999999999999999999988887889988888999999999
Q ss_pred EECCCeEEEcCCcchhh
Q 029951 142 YPSSDVEVETQDEDEVY 158 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~~~ 158 (185)
++.+|++|++++.+.+|
T Consensus 80 ~~~~d~~v~~~~~~~~~ 96 (97)
T 1a70_A 80 YPVSDVTIETHKKEELT 96 (97)
T ss_dssp EESSCEEEECCCGGGCC
T ss_pred EECCCEEEEeCchhhcc
Confidence 99999999999877754
No 6
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=99.90 E-value=2.4e-23 Score=151.30 Aligned_cols=94 Identities=39% Similarity=0.770 Sum_probs=84.4
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeE
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGY 142 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~ 142 (185)
|+|+|... +| .++|++++|+|||++|+++|+.+|++|+.|.||+|+|+|++|.+.+.+...|+++++++|+||+||++
T Consensus 1 ~~v~~~~~-~g-~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~ 78 (94)
T 1awd_A 1 YKVTLKTP-SG-EETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAY 78 (94)
T ss_dssp CEEEEEET-TE-EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCE
T ss_pred CEEEEEeC-CC-cEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECE
Confidence 57888642 34 57899999999999999999999999999999999999999999888878899888899999999999
Q ss_pred ECCCeEEEcCCcchhh
Q 029951 143 PSSDVEVETQDEDEVY 158 (185)
Q Consensus 143 p~sDl~Iel~~~~~~~ 158 (185)
+.+|++|++++++.+|
T Consensus 79 ~~~d~~i~~~~~~~~~ 94 (94)
T 1awd_A 79 PTSDVTILTHQEAALY 94 (94)
T ss_dssp ESSCEEEECCCGGGGC
T ss_pred ECCCEEEEecchhccC
Confidence 9999999999877653
No 7
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=99.89 E-value=5e-23 Score=149.48 Aligned_cols=92 Identities=33% Similarity=0.586 Sum_probs=82.9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
+++|+|... |..++|++++|+|||++|+++| .++++|+.|.||+|+|+|++|.+.+.+...|++.++++|+||+||+
T Consensus 1 ~~~V~~~~~--~~~~~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~ 77 (93)
T 1wri_A 1 AYKVTLKTP--DGDITFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIA 77 (93)
T ss_dssp CEEEEEEET--TEEEEEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTC
T ss_pred CEEEEEEEC--CCeEEEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeC
Confidence 378888742 3257899999999999999999 9999999999999999999999988887889988889999999999
Q ss_pred EECCCeEEEcCCcch
Q 029951 142 YPSSDVEVETQDEDE 156 (185)
Q Consensus 142 ~p~sDl~Iel~~~~~ 156 (185)
+|.+|++|+++++++
T Consensus 78 ~~~~d~~v~~~~~~~ 92 (93)
T 1wri_A 78 IPESDVVIETHKEDE 92 (93)
T ss_dssp EESSCEEEECCCGGG
T ss_pred EECCCEEEEeccccc
Confidence 999999999998765
No 8
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=99.87 E-value=1.1e-22 Score=148.62 Aligned_cols=92 Identities=28% Similarity=0.495 Sum_probs=82.0
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCC--cccCCCChhhhcCCeEEe
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ--PEALGISAELKSKGYALL 138 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~--~e~~~Ls~~e~~~g~rLa 138 (185)
.+++|+|... +|..++|++++|+|||++|+++|+.++++|+.|.||+|+|+|++|.+.+ .+...|++.++++|+||+
T Consensus 3 ~~~~v~~~~~-~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~La 81 (98)
T 1jq4_A 3 RVHTITAVTE-DGESLRFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLL 81 (98)
T ss_dssp CEEEEEEEET-TTEEEEEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCT
T ss_pred CcEEEEEEec-CCCcEEEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEE
Confidence 3688999853 3555899999999999999999999999999999999999999999875 466778888888999999
Q ss_pred eeeEECCCeEEEcCC
Q 029951 139 CVGYPSSDVEVETQD 153 (185)
Q Consensus 139 Cqa~p~sDl~Iel~~ 153 (185)
||+++.+|++|++++
T Consensus 82 Cq~~~~~d~~v~~~~ 96 (98)
T 1jq4_A 82 CRTYPKTDLEIELPY 96 (98)
T ss_dssp TTCCSSCCSEEECSC
T ss_pred eeCEECCCEEEEecC
Confidence 999999999999875
No 9
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=99.85 E-value=5.8e-22 Score=147.24 Aligned_cols=91 Identities=20% Similarity=0.290 Sum_probs=79.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCccCC------cccCCCCh-hhhcCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKSKG 134 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e~~~g 134 (185)
+|+|... +|..++|++++|+|||++++++|++ |+++|+ .|.||+|+|+|++|++.. .+...|+. .++++|
T Consensus 2 ~vt~~~~-~G~~~~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g 80 (104)
T 3lxf_A 2 AILVTTR-DGTRTEIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPH 80 (104)
T ss_dssp EEEEECT-TSCEEEEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTT
T ss_pred EEEEEeC-CCCEEEEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCC
Confidence 6888764 6888999999999999999999999 999999 999999999999997642 13445665 678899
Q ss_pred eEEeeeeEECCC---eEEEcCCcc
Q 029951 135 YALLCVGYPSSD---VEVETQDED 155 (185)
Q Consensus 135 ~rLaCqa~p~sD---l~Iel~~~~ 155 (185)
|||+||+++.+| ++|++|+.+
T Consensus 81 ~rLaCq~~~~~dl~gl~v~ip~~~ 104 (104)
T 3lxf_A 81 SRLSCQITINDKLEGLEVEIAPED 104 (104)
T ss_dssp EEEGGGCBCCGGGTTCEEEECCCC
T ss_pred cEEEeeCEEccCCCCEEEEecCCC
Confidence 999999999999 999998753
No 10
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=99.85 E-value=7.1e-22 Score=152.13 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=82.8
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCccC------CcccCCCC-h
Q 029951 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIK------QPEALGIS-A 128 (185)
Q Consensus 58 ~~~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~------~~e~~~Ls-~ 128 (185)
+...|++|+|... +|..++|++++|+|||++|+++||+ |+++|+ .|.||+|+|+|.+|++. ..+...|+ .
T Consensus 17 ~~~~M~~Vt~~~~-~G~~~~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~ 95 (126)
T 3hui_A 17 RGSHMAKINFVDH-TGETRTVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFG 95 (126)
T ss_dssp TTCSEEEEEEECT-TSCEEEEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTS
T ss_pred CCCCceEEEEEeC-CCCEEEEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCch
Confidence 3367899999842 6878899999999999999999999 999999 99999999999999743 22445676 3
Q ss_pred hhhcCCeEEeeeeEECCC---eEEEcCCcc
Q 029951 129 ELKSKGYALLCVGYPSSD---VEVETQDED 155 (185)
Q Consensus 129 ~e~~~g~rLaCqa~p~sD---l~Iel~~~~ 155 (185)
.++++||||+||+++.+| ++|++|+.+
T Consensus 96 ~e~~~g~RLaCQ~~~~~dldgl~V~lp~~~ 125 (126)
T 3hui_A 96 YDVRPNSRLSCQIKVSNELDGLIVTTPERQ 125 (126)
T ss_dssp SSCCTTEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred hhccCCeEEeeeCEECcCCCcEEEEecCcC
Confidence 678899999999999999 999999764
No 11
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=99.84 E-value=1.4e-21 Score=145.58 Aligned_cols=94 Identities=19% Similarity=0.240 Sum_probs=77.7
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCC------cccCCCCh-hhhc
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-ELKS 132 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e~~ 132 (185)
.+++|+|... +|..++|++++|+|||++|+++||+||++|+ .|.||+|+|+|.+|++.. .+...|+. .+++
T Consensus 4 ~m~~v~~~~~-~g~~~~~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~ 82 (109)
T 2y5c_A 4 DVVNVVFVDR-SGQRIPVSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQ 82 (109)
T ss_dssp CEEEEEEECT-TSCEEEEEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCC
T ss_pred CcEEEEEEcC-CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCC
Confidence 4678888642 6877789999999999999999999999999 599999999999996432 13344552 4678
Q ss_pred CCeEEeeeeEECCC---eEEEcCCcc
Q 029951 133 KGYALLCVGYPSSD---VEVETQDED 155 (185)
Q Consensus 133 ~g~rLaCqa~p~sD---l~Iel~~~~ 155 (185)
+||||+||+++.+| ++|++|+.+
T Consensus 83 ~g~rLaCq~~~~~d~~~~~v~ip~~~ 108 (109)
T 2y5c_A 83 ENSRLGCQIVLTPELEGAEFTLPKIT 108 (109)
T ss_dssp TTEEEGGGCBCCGGGTTCEEECCSCC
T ss_pred CCcEeeEEeEEecCCCeEEEEecCCC
Confidence 99999999999997 999998653
No 12
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=99.84 E-value=2.5e-21 Score=144.92 Aligned_cols=93 Identities=19% Similarity=0.200 Sum_probs=76.3
Q ss_pred ceEEEEEeCCCC---cEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCc-----ccCCCChh-hh
Q 029951 62 THKVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP-----EALGISAE-LK 131 (185)
Q Consensus 62 ~~~Vtv~~~~~G---~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~-----e~~~Ls~~-e~ 131 (185)
|++|+|.+. +| ..++|++++|+|||++|+++||+||++|+ .|.||+|+|+|++|..... +...|+.. ++
T Consensus 1 M~~vt~~~~-~g~~~~~~~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~ 79 (113)
T 3ah7_A 1 MPLVTFLPH-EKFCPEGLTVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGL 79 (113)
T ss_dssp CCEEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTC
T ss_pred CCEEEEEcC-CCcCCCCeEEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhccccc
Confidence 357888763 23 34899999999999999999999999999 7999999999999974331 23446654 67
Q ss_pred cCCeEEeeeeEEC-CCeEEEcCCcc
Q 029951 132 SKGYALLCVGYPS-SDVEVETQDED 155 (185)
Q Consensus 132 ~~g~rLaCqa~p~-sDl~Iel~~~~ 155 (185)
++|+||+||+++. +|++|+++..+
T Consensus 80 ~~g~rLaCq~~~~~~dl~v~~~~~~ 104 (113)
T 3ah7_A 80 EAQSRLGCQVFVADEDLTIEIPKYS 104 (113)
T ss_dssp CTTEEEGGGCBCCSSCEEEECCSCC
T ss_pred CCCcEEeeeCEEeCCCEEEEECchh
Confidence 8999999999998 89999998654
No 13
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=99.83 E-value=2.1e-21 Score=143.67 Aligned_cols=91 Identities=19% Similarity=0.281 Sum_probs=75.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCccC------CcccCCCChhh-h-cC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIK------QPEALGISAEL-K-SK 133 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~------~~e~~~Ls~~e-~-~~ 133 (185)
+|+|.. .+|..++|++++|+|||++|+++||+ |+++|+ .|.||+|+|+|.+|.+. ..+...|+..+ . ++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1xlq_A 2 KVVYVS-HDGTRRELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKP 80 (106)
T ss_dssp EEEEEC-TTSCEEEEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 678843 26877899999999999999999999 999996 89999999999999432 23444566554 6 89
Q ss_pred CeEEeeeeEECC---CeEEEcCCcc
Q 029951 134 GYALLCVGYPSS---DVEVETQDED 155 (185)
Q Consensus 134 g~rLaCqa~p~s---Dl~Iel~~~~ 155 (185)
|+||+||+++.+ |++|++|+.+
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1xlq_A 81 NSRLCCQIIMTPELDGIVVDVPDRQ 105 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CcEeeeeeEeecCCCCEEEEecCcc
Confidence 999999999998 6899998643
No 14
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=99.83 E-value=1.9e-21 Score=144.48 Aligned_cols=91 Identities=14% Similarity=0.152 Sum_probs=76.2
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCC--CCCC-cccccCceEEEecCccCC------cccCCCCh-hh
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-EL 130 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip--~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~e 130 (185)
.+++|+|... +|..++|++++|+|||++|+++||+|+ +.|+ .|.||+|+|+|.+|.+.. .+...|+. .+
T Consensus 5 ~m~~V~~~~~-~g~~~~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~ 83 (108)
T 2bt6_A 5 DKITVHFINR-DGETLTTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYG 83 (108)
T ss_dssp CEEEEEEECT-TSCEEEEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTT
T ss_pred ceEEEEEECC-CCCEEEEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCccc
Confidence 4688999842 687789999999999999999999999 9998 699999999999995432 23455664 56
Q ss_pred hcCCeEEeeeeEECC---CeEEEcC
Q 029951 131 KSKGYALLCVGYPSS---DVEVETQ 152 (185)
Q Consensus 131 ~~~g~rLaCqa~p~s---Dl~Iel~ 152 (185)
+++||||+||+++.+ |++|++|
T Consensus 84 ~~~g~rLaCq~~~~~d~d~~~V~~p 108 (108)
T 2bt6_A 84 LTDRSRLGCQICLTKAMDNMTVRVP 108 (108)
T ss_dssp CCTTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCCCcEeeEEEEecCCCCCEEEEcC
Confidence 789999999999998 5999875
No 15
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=99.83 E-value=2.5e-21 Score=143.23 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCccCC------cccCCCChh-hhc-C
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQ------PEALGISAE-LKS-K 133 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~~-e~~-~ 133 (185)
+|+|.. .+|..++|++++|+|||++|+++||+ |+++|+ .|.||+|+|+|++|++.. .+...|+.. +++ +
T Consensus 2 ~v~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (106)
T 1uwm_A 2 KIIFIE-HNGTRHEVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPA 80 (106)
T ss_dssp EEEEEC-TTCCEEEEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTT
T ss_pred EEEEEe-CCCCEEEEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCC
Confidence 677843 26777899999999999999999999 999996 899999999999995432 244467665 577 9
Q ss_pred CeEEeeeeEECC---CeEEEcCCcc
Q 029951 134 GYALLCVGYPSS---DVEVETQDED 155 (185)
Q Consensus 134 g~rLaCqa~p~s---Dl~Iel~~~~ 155 (185)
|+||+||+++.+ |++|++|..+
T Consensus 81 g~rLaCq~~~~~d~~~l~v~~p~~~ 105 (106)
T 1uwm_A 81 TSRLTCQIKVTSLLDGLVVHLPEKQ 105 (106)
T ss_dssp TEEEGGGCBCCGGGTTEEEECCSCC
T ss_pred CcEecccCEEccCCCCEEEEecCCC
Confidence 999999999998 5999998643
No 16
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=99.83 E-value=5.9e-21 Score=140.59 Aligned_cols=91 Identities=22% Similarity=0.178 Sum_probs=76.4
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCc------ccCCCCh-hhhc
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQP------EALGISA-ELKS 132 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~------e~~~Ls~-~e~~ 132 (185)
++++|+|.. .+|..++|++++|+|||++|+++|++++++|+ .|.||+|+|+|.+|++.+. +...|+. .+.+
T Consensus 2 ~~~~v~~~~-~~g~~~~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~ 80 (103)
T 2wlb_A 2 TGIKVFFVT-PEGREIMIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLE 80 (103)
T ss_dssp CCEEEEEEC-TTCCEEEEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCC
T ss_pred CceEEEEEe-CCCCEEEEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCC
Confidence 357888882 16877899999999999999999999999999 8999999999999976532 2234554 3578
Q ss_pred CCeEEeeeeEECCC---eEEEcC
Q 029951 133 KGYALLCVGYPSSD---VEVETQ 152 (185)
Q Consensus 133 ~g~rLaCqa~p~sD---l~Iel~ 152 (185)
+|+||+||+++.+| ++|++|
T Consensus 81 ~g~rLaCq~~~~~d~~~l~v~lp 103 (103)
T 2wlb_A 81 ETSRLGCQVLLRKDLDGIRVRIP 103 (103)
T ss_dssp TTEEEGGGCBCCGGGTTEEEECC
T ss_pred CCcEeeEeeEeCCCCCcEEEEcC
Confidence 99999999999999 999875
No 17
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.82 E-value=2.5e-20 Score=160.66 Aligned_cols=95 Identities=25% Similarity=0.468 Sum_probs=84.0
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCC----cccCCCChhhhcCCe
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQ----PEALGISAELKSKGY 135 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~----~e~~~Ls~~e~~~g~ 135 (185)
|++++|+|... +|..++|++++|+|||++|+++||+|+++|+.|.||+|+++|++|++.+ .+...|+++++++|+
T Consensus 1 m~~~~v~~~~~-~~~~~~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~ 79 (338)
T 1krh_A 1 MSNHQVALQFE-DGVTRFICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGY 79 (338)
T ss_dssp -CCEEEEEECT-TSCEEEEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTE
T ss_pred CCceEEEEEEc-CCCcEEEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCe
Confidence 56789999853 4556899999999999999999999999999999999999999998865 266789988899999
Q ss_pred EEeeeeEECCCeEEEcCCcc
Q 029951 136 ALLCVGYPSSDVEVETQDED 155 (185)
Q Consensus 136 rLaCqa~p~sDl~Iel~~~~ 155 (185)
||+||+++.+|++|+++...
T Consensus 80 ~LaCq~~~~~~~~v~~~~~~ 99 (338)
T 1krh_A 80 VLACQCRPTSDAVFQIQASS 99 (338)
T ss_dssp EETTTCEESSSEEEEESSCT
T ss_pred EEEEeCEECCCeEEEEeccc
Confidence 99999999999999998753
No 18
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=99.82 E-value=1e-21 Score=145.15 Aligned_cols=90 Identities=16% Similarity=0.235 Sum_probs=75.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCc------cCCcccCCCC--hhhhcC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQ------IKQPEALGIS--AELKSK 133 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~------v~~~e~~~Ls--~~e~~~ 133 (185)
+|+|.. .+|..++|++++|+|||++|+++||+ |+++|+ .|.||+|+|+|.+|+ +...+...|+ ..++++
T Consensus 2 ~V~~~~-~~g~~~~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~ 80 (105)
T 1b9r_A 2 RVVFID-EQSGEYAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTA 80 (105)
T ss_dssp EEEECC-TTTSCEEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCT
T ss_pred EEEEEe-CCCCEEEEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCC
Confidence 577732 25767899999999999999999999 999999 799999999999994 3334445666 467889
Q ss_pred CeEEeeeeEECC---CeEEEcCCc
Q 029951 134 GYALLCVGYPSS---DVEVETQDE 154 (185)
Q Consensus 134 g~rLaCqa~p~s---Dl~Iel~~~ 154 (185)
|+||+||+++.+ |++|++|+.
T Consensus 81 g~rLaCq~~~~~~~~~l~v~~p~~ 104 (105)
T 1b9r_A 81 GTRLSCQVFIDPSMDGLIVRVPLP 104 (105)
T ss_dssp TBSCGGGCCCCTTSTTEEEECCSC
T ss_pred CcEeeeeCEecCCCCcEEEEecCC
Confidence 999999999999 799998753
No 19
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=99.81 E-value=1.8e-20 Score=144.52 Aligned_cols=87 Identities=32% Similarity=0.599 Sum_probs=76.0
Q ss_pred ceEEEEEeCCCCcEE-EEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccCCcccCCCChhh-hcCCeEEee
Q 029951 62 THKVTVHDRFRGVVH-EFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAEL-KSKGYALLC 139 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~-~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e-~~~g~rLaC 139 (185)
+.+|+|.. +| + ++++++|+|||++|+++|+.+|++|+.|.||+|+++|++|.+.+.+...|++.+ .++|+||+|
T Consensus 27 m~~i~i~~--~g--~~~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaC 102 (128)
T 1doi_A 27 ASDMDLDD--ED--YGSLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTC 102 (128)
T ss_dssp HHHSCCCT--TT--EEEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGG
T ss_pred ccEEEEEe--CC--cEEEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEE
Confidence 34555654 56 5 899999999999999999999999999999999999999999887777898755 689999999
Q ss_pred eeEECCC-eEEEcC
Q 029951 140 VGYPSSD-VEVETQ 152 (185)
Q Consensus 140 qa~p~sD-l~Iel~ 152 (185)
|++|.+| ++|++.
T Consensus 103 q~~~~~d~i~i~~~ 116 (128)
T 1doi_A 103 IGSPDADEVKIVYN 116 (128)
T ss_dssp GEEECSSEEEEEEC
T ss_pred EeEEcCCeEEEEec
Confidence 9999999 777654
No 20
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=99.80 E-value=5.9e-20 Score=137.18 Aligned_cols=92 Identities=20% Similarity=0.255 Sum_probs=73.5
Q ss_pred eEEEEEeCCCC---cEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCccc-----CCCChh-hhc
Q 029951 63 HKVTVHDRFRG---VVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEA-----LGISAE-LKS 132 (185)
Q Consensus 63 ~~Vtv~~~~~G---~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e~-----~~Ls~~-e~~ 132 (185)
.+|+|... +| ..++|++++|+|||++|+++|+.+|++|+ .|.||+|+|+|.+|.+.+... ..|+.. +..
T Consensus 2 ~~i~~~~~-~g~~~~~~~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~ 80 (111)
T 1i7h_A 2 PKIVILPH-QDLCPDGAVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLE 80 (111)
T ss_dssp CEEEECCB-TTTBTTCEEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCC
T ss_pred CEEEEEeC-CCcCCCCeEEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccC
Confidence 46777653 22 33899999999999999999999999995 999999999999998765321 223321 456
Q ss_pred CCeEEeeeeEEC-CCeEEEcCCcc
Q 029951 133 KGYALLCVGYPS-SDVEVETQDED 155 (185)
Q Consensus 133 ~g~rLaCqa~p~-sDl~Iel~~~~ 155 (185)
+|+||+||+++. +|++|+++..+
T Consensus 81 ~g~rLaCq~~~~~~dl~v~~~~~~ 104 (111)
T 1i7h_A 81 PESRLSCQARVTDEDLVVEIPRYT 104 (111)
T ss_dssp TTEEETTTCBCCSSCEEEECCSCC
T ss_pred CCcEEEEEEEEeCCCEEEEEChHH
Confidence 899999999996 89999998643
No 21
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.80 E-value=1.1e-19 Score=156.31 Aligned_cols=101 Identities=20% Similarity=0.382 Sum_probs=83.3
Q ss_pred ccccccccccCCCCC-----CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEecCccC
Q 029951 45 ELQTTAGVNGSYSPS-----IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKSGQIK 119 (185)
Q Consensus 45 ~~~~~~~~~~~~~~~-----~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~G~v~ 119 (185)
|....++.+.|..+. ...++|+|.+ +| ++|++++|+|||++++++|+++|++|+.|.||+|+++|++|++.
T Consensus 215 ~~~~~i~~E~F~~~~~~~~~~~~~~v~~~~--~~--~~~~~~~~~~ll~a~~~~g~~~~~~C~~G~Cg~C~~~v~~G~~~ 290 (321)
T 2pia_A 215 WPSGTVHFESFGATNTNARENTPFTVRLSR--SG--TSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEAD 290 (321)
T ss_dssp SCTTCEEEECCCCCCCCCSCCCCEEEEETT--TC--CEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEE
T ss_pred CCHhhEEEEecCCCCCCCCCCccEEEEEeC--CC--eEEEECCCCcHHHHHHHcCCCCCCCCCCCCCCCCEEEEecCccc
Confidence 555556665553221 2457788754 46 78999999999999999999999999999999999999999998
Q ss_pred CcccCCCChhhhcCCeEEeeeeEECCC-eEEEc
Q 029951 120 QPEALGISAELKSKGYALLCVGYPSSD-VEVET 151 (185)
Q Consensus 120 ~~e~~~Ls~~e~~~g~rLaCqa~p~sD-l~Iel 151 (185)
+.+ ..|+++++ +|++|+||++|.+| ++|++
T Consensus 291 ~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l 321 (321)
T 2pia_A 291 HRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL 321 (321)
T ss_dssp CCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred ccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence 766 57888888 99999999999998 88864
No 22
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=99.80 E-value=8.4e-20 Score=171.84 Aligned_cols=96 Identities=24% Similarity=0.437 Sum_probs=87.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-cccccCceEEEecCccCCcccCCCChhhhcCCeEEe
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALL 138 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLa 138 (185)
|.+++|+|.+ +| ++|++++|+|||++++++|++++++|+ +|.||+|+++|++|++.+.+...|+++++++|+||+
T Consensus 1 M~m~~V~~~~--sg--~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLa 76 (631)
T 3zyy_X 1 MAEYKVLFKP--DQ--KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLA 76 (631)
T ss_dssp --CEEEEEET--TT--EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEET
T ss_pred CCceEEEEec--CC--eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEe
Confidence 5689999986 57 899999999999999999999999999 999999999999999988888889998999999999
Q ss_pred eeeEECCCeEEEcCCcchhhh
Q 029951 139 CVGYPSSDVEVETQDEDEVYW 159 (185)
Q Consensus 139 Cqa~p~sDl~Iel~~~~~~~~ 159 (185)
||+++.+|++|++++.++++.
T Consensus 77 Cqa~~~sDl~Ielp~~~~~~~ 97 (631)
T 3zyy_X 77 CQTYPESDLIIEIPFDSRLTQ 97 (631)
T ss_dssp TTEEECSSEEEECCTTSSCSS
T ss_pred eeCEECCCEEEEecchhhhhh
Confidence 999999999999998877543
No 23
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=99.78 E-value=1.7e-19 Score=130.87 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=70.4
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC-CCCCCC-cccccCceEEEecCccCCc---ccCCCChhhhcCCeEEe
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT-LPFACR-HGCCTSCAVRIKSGQIKQP---EALGISAELKSKGYALL 138 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~-ip~~C~-~G~CGtC~V~v~~G~v~~~---e~~~Ls~~e~~~g~rLa 138 (185)
+|+|.+ +|..++|++++|+|||++|+++|++ ++++|+ .|.||+|+|+|.+|.+.+. +...|+ ++++|+||+
T Consensus 2 ~v~i~~--~g~~~~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLa 77 (93)
T 1l5p_A 2 TITAVK--GGVKKQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLA 77 (93)
T ss_dssp EEEEEE--TTEEEEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEG
T ss_pred eEEEEe--CCcEEEEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEe
Confidence 466766 5866799999999999999999999 999999 9999999999999987642 334555 678999999
Q ss_pred eeeEECCC---eEEE
Q 029951 139 CVGYPSSD---VEVE 150 (185)
Q Consensus 139 Cqa~p~sD---l~Ie 150 (185)
||+++.+| ++|+
T Consensus 78 Cq~~~~~d~~g~~v~ 92 (93)
T 1l5p_A 78 CAITLSGENDGAVFE 92 (93)
T ss_dssp GGCEECGGGTTCEEE
T ss_pred eECEECCCCCceEEE
Confidence 99999987 4554
No 24
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=99.72 E-value=1.6e-19 Score=138.43 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=20.0
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCC--CCCC-cccccCceEEEecCccCC------cccCCCCh-h
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLP--FACR-HGCCTSCAVRIKSGQIKQ------PEALGISA-E 129 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip--~~C~-~G~CGtC~V~v~~G~v~~------~e~~~Ls~-~ 129 (185)
+.+++|+|... +|..++|++++|+|||++|+++||+|+ +.|+ .|.||+|+|+|.+|.... .|...|+. .
T Consensus 3 ~~~v~Vtf~~~-~G~~~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~ 81 (123)
T 3n9z_C 3 EDKITVHFINR-DGETLTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAY 81 (123)
T ss_dssp -----------------------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--
T ss_pred CCcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccc
Confidence 46788888742 577789999999999999999999999 9999 899999999999754321 13444553 4
Q ss_pred hhcCCeEEeeeeEECC---CeEEEcCCcc
Q 029951 130 LKSKGYALLCVGYPSS---DVEVETQDED 155 (185)
Q Consensus 130 e~~~g~rLaCqa~p~s---Dl~Iel~~~~ 155 (185)
++.+++||+||+++.+ |++|++|...
T Consensus 82 ~~~~~~RLaCQ~~v~~~ld~l~V~ip~~~ 110 (123)
T 3n9z_C 82 GLTDRSRLGCQICLTKSMDNMTVRVPETV 110 (123)
T ss_dssp ------CBCC-------------------
T ss_pred cccCCeEEeeEeEEccCCCCEEEEECccc
Confidence 5678999999999998 7999998765
No 25
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=98.75 E-value=2.3e-08 Score=79.74 Aligned_cols=68 Identities=21% Similarity=0.425 Sum_probs=54.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CCC-CCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NIT-LPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI~-ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.|+|.. +|+.+++++++|+|||++++++ |+. ++++|+.|.||+|.|.| +|. .+++|.+
T Consensus 11 ~i~~~i--ng~~~~~~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG~-----------------~v~sC~~ 70 (168)
T 1t3q_A 11 RISATI--NGKPRVFYVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGA-----------------PMRSCLT 70 (168)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CCC-----------------Eeechhh
Confidence 455554 6877888899999999999996 997 99999999999999998 542 3778888
Q ss_pred EECC--CeEEEc
Q 029951 142 YPSS--DVEVET 151 (185)
Q Consensus 142 ~p~s--Dl~Iel 151 (185)
.+.. +..|.+
T Consensus 71 ~~~~~~G~~v~T 82 (168)
T 1t3q_A 71 LAVQAEGCSIET 82 (168)
T ss_dssp BGGGGTTCEEEC
T ss_pred HHHHhCCCeEEE
Confidence 7664 555544
No 26
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=98.75 E-value=1e-08 Score=98.15 Aligned_cols=85 Identities=20% Similarity=0.273 Sum_probs=60.3
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCC------CcccccCceEEEecCccCCcccCCCChhh-----h
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC------RHGCCTSCAVRIKSGQIKQPEALGISAEL-----K 131 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C------~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e-----~ 131 (185)
++|+| +| +++++++|+|||+|++++||.||+.| +.|.|+.|.|+|..+.........++++. .
T Consensus 2 v~i~i----dg--~~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~ 75 (783)
T 3i9v_3 2 VRVKV----ND--RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQW 75 (783)
T ss_dssp EEEEC----SS--CEEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCB
T ss_pred eEEEE----CC--EEEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEeccccccccccccccccccccccc
Confidence 44555 57 68999999999999999999999999 58999999999953221111111111111 1
Q ss_pred cCCeEEeeeeEECCCeEEEcCC
Q 029951 132 SKGYALLCVGYPSSDVEVETQD 153 (185)
Q Consensus 132 ~~g~rLaCqa~p~sDl~Iel~~ 153 (185)
..+.+++|++.+..+|+|++..
T Consensus 76 ~~~~~~aC~t~v~~gm~v~t~~ 97 (783)
T 3i9v_3 76 QPKLAASCVTAVADGMVVDTLS 97 (783)
T ss_dssp CSSCEETTTCBCCSSEEEESSS
T ss_pred CCCcccccCCCCCCCCEEEECC
Confidence 2468899999999999999864
No 27
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=98.48 E-value=2.7e-07 Score=85.69 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=57.5
Q ss_pred EEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCC-------cccccCceEEEecCccCCcccCCCChhhhcCCeEE
Q 029951 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACR-------HGCCTSCAVRIKSGQIKQPEALGISAELKSKGYAL 137 (185)
Q Consensus 65 Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~-------~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rL 137 (185)
|+|.. +| +.+++++|+|||++++++|+.+|+.|+ .|.||.|.|.| +|. . .++
T Consensus 2 v~~~i--ng--~~v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~ 60 (574)
T 3c8y_A 2 KTIII--NG--VQFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVT 60 (574)
T ss_dssp EEEEE--TT--EEEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEE
T ss_pred eEEEE--CC--EEEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccc
Confidence 44444 67 789999999999999999999999998 89999999987 221 1 789
Q ss_pred eeeeEECCCeEEEcCC
Q 029951 138 LCVGYPSSDVEVETQD 153 (185)
Q Consensus 138 aCqa~p~sDl~Iel~~ 153 (185)
+|++.+..+++|.+.+
T Consensus 61 aC~t~v~~gm~V~T~~ 76 (574)
T 3c8y_A 61 ACDTLIEDGMIINTNS 76 (574)
T ss_dssp GGGCBCCTTCEEESSC
T ss_pred cCCCCcccceeEEecc
Confidence 9999999999998755
No 28
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=98.46 E-value=2.4e-07 Score=76.62 Aligned_cols=60 Identities=18% Similarity=0.364 Sum_probs=49.3
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECCC--
Q 029951 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSSD-- 146 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~sD-- 146 (185)
.+++++++|+|||++|+++| +...++|+.|.||+|.|+| +|. .+|+|++.+...
T Consensus 25 ~~~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~ 86 (243)
T 1kf6_B 25 FYEVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTD 86 (243)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTT
T ss_pred EEEEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCC
Confidence 37888999999999999998 3467799999999999996 553 388999888776
Q ss_pred -eEEEcC
Q 029951 147 -VEVETQ 152 (185)
Q Consensus 147 -l~Iel~ 152 (185)
++|+-.
T Consensus 87 ~~~i~~l 93 (243)
T 1kf6_B 87 GMKVEAL 93 (243)
T ss_dssp CEEEECC
T ss_pred cEEEEec
Confidence 787753
No 29
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=98.30 E-value=1.5e-06 Score=68.82 Aligned_cols=67 Identities=22% Similarity=0.410 Sum_probs=52.7
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeee
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVG 141 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa 141 (185)
.|+|.. ||+.++++++++++||+++++. |+ ..+++|+.|.||+|.|.| +|. .+++|.+
T Consensus 4 ~i~~~v--NG~~~~v~~~~~~tLL~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~sC~~ 63 (161)
T 1rm6_C 4 ILRLTL--NGRAREDLVPDNMLLLDYLRETVGLTGTKQGCDGGECGACTVLV-DDR-----------------PRLACST 63 (161)
T ss_dssp EEEEEE--TTEEEEEEEETTCBHHHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTE-----------------EEEGGGS
T ss_pred eEEEEE--CCEEEEEecCCcCcHHHHHHHcCCCcccccCCCCCCCCCCEEEE-CCc-----------------EEechHH
Confidence 455655 6977888889999999999997 75 589999999999999987 442 4788888
Q ss_pred EECC--CeEEE
Q 029951 142 YPSS--DVEVE 150 (185)
Q Consensus 142 ~p~s--Dl~Ie 150 (185)
.+.. +..|.
T Consensus 64 ~~~~~~G~~v~ 74 (161)
T 1rm6_C 64 LAHQVAGKKVE 74 (161)
T ss_dssp BGGGGTTSEEE
T ss_pred HHHHhCCceEE
Confidence 7654 44444
No 30
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=98.30 E-value=4.7e-07 Score=74.86 Aligned_cols=59 Identities=20% Similarity=0.419 Sum_probs=45.1
Q ss_pred EEEEEeCCCchHHHHHHHCC------CCCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECC---
Q 029951 75 VHEFLVPEDQYILHTAESQN------ITLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS--- 145 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~G------I~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~s--- 145 (185)
++++++++|+||||+|++.| +...++|+.|.||+|.|+| +|.. +|+|++.+..
T Consensus 25 ~~~v~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~-----------------~~aC~~~~~~~~g 86 (241)
T 2bs2_B 25 EYKIEEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLTKDFED 86 (241)
T ss_dssp EEEEECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBGGGCTT
T ss_pred EEEEeCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe-----------------ecchhCcHhHcCC
Confidence 36788899999999998764 4566799999999999998 7753 4777776654
Q ss_pred C-eEEEc
Q 029951 146 D-VEVET 151 (185)
Q Consensus 146 D-l~Iel 151 (185)
+ ++|+.
T Consensus 87 ~~~~ie~ 93 (241)
T 2bs2_B 87 GVITLLP 93 (241)
T ss_dssp SEEEEEC
T ss_pred CeEEEec
Confidence 2 55554
No 31
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=98.27 E-value=1.9e-06 Score=68.50 Aligned_cols=51 Identities=14% Similarity=0.386 Sum_probs=43.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEE
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v 113 (185)
.+..|+|.. +|+.++++++++++||+++++. |+ ...++|+.|.||+|.|.|
T Consensus 2 ~~~~i~~~v--NG~~~~v~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v 54 (160)
T 3hrd_D 2 NKITINLNL--NGEARSIVTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF 54 (160)
T ss_dssp CCEEEEEEE--TTEEEEEEECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE
T ss_pred CcceEEEEE--CCEEEEEecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE
Confidence 344566665 6888889999999999999986 87 589999999999999987
No 32
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=98.23 E-value=2.9e-06 Score=67.73 Aligned_cols=65 Identities=20% Similarity=0.414 Sum_probs=49.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEE
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYAL 137 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rL 137 (185)
|+..+|+|.. +|+.++++++++++||+++++. |+ ..+++|+.|.||+|.|.| +|. .++
T Consensus 1 M~~~~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG~-----------------~v~ 60 (166)
T 1n62_A 1 MAKAHIELTI--NGHPVEALVEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DGM-----------------SVK 60 (166)
T ss_dssp --CEEEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE-----------------EEE
T ss_pred CCCceEEEEE--CCEEEEEecCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CCc-----------------EEe
Confidence 3344566665 6888888999999999999984 65 478999999999999987 442 377
Q ss_pred eeeeEEC
Q 029951 138 LCVGYPS 144 (185)
Q Consensus 138 aCqa~p~ 144 (185)
+|.+.+.
T Consensus 61 SC~~~~~ 67 (166)
T 1n62_A 61 SCTMFAV 67 (166)
T ss_dssp GGGSBGG
T ss_pred chhhhHH
Confidence 8887663
No 33
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=98.22 E-value=3e-06 Score=67.46 Aligned_cols=64 Identities=22% Similarity=0.431 Sum_probs=49.8
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEe
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALL 138 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLa 138 (185)
+...|+|.. +|+.++++++++++||+++++. |+ ..+++|+.|.||+|.|.| +|. .+++
T Consensus 2 ~~~~i~~~v--NG~~~~~~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG~-----------------~v~s 61 (163)
T 1ffv_A 2 AKKIITVNV--NGKAQEKAVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGR-----------------SVKS 61 (163)
T ss_dssp -CEEEEEEE--TTEEEEEEECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTE-----------------EEEG
T ss_pred CCceEEEEE--CCEEEEEecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CCc-----------------Eecc
Confidence 334566655 6888888999999999999984 65 479999999999999987 442 4777
Q ss_pred eeeEEC
Q 029951 139 CVGYPS 144 (185)
Q Consensus 139 Cqa~p~ 144 (185)
|.+.+.
T Consensus 62 C~~~~~ 67 (163)
T 1ffv_A 62 CTHLAV 67 (163)
T ss_dssp GGSBGG
T ss_pred hHhhHH
Confidence 877655
No 34
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=98.09 E-value=2.4e-06 Score=70.31 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=35.5
Q ss_pred EEEEeCC--CchHHHHHHHCC-----CCCCCCCCcccccCceEEEecCc
Q 029951 76 HEFLVPE--DQYILHTAESQN-----ITLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 76 ~~~~v~~--g~tLLdaa~~~G-----I~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
+++++++ |+|||++|++.| +...++|+.|.||+|.|.| +|.
T Consensus 23 ~~v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~ 70 (238)
T 2wdq_B 23 YTLEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK 70 (238)
T ss_dssp EEEECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred EEeecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence 6778888 999999999987 5677899999999999987 553
No 35
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=97.92 E-value=8.3e-06 Score=68.04 Aligned_cols=59 Identities=24% Similarity=0.412 Sum_probs=44.9
Q ss_pred EEEEEeCC-CchHHHHHHHCCC------CCCCCCCcccccCceEEEecCccCCcccCCCChhhhcCCeEEeeeeEECC--
Q 029951 75 VHEFLVPE-DQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQIKQPEALGISAELKSKGYALLCVGYPSS-- 145 (185)
Q Consensus 75 ~~~~~v~~-g~tLLdaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~v~~~e~~~Ls~~e~~~g~rLaCqa~p~s-- 145 (185)
.+++++++ |+|||++|++.|+ ...++|+.|.||+|.|.| +|. .+|+|++.+..
T Consensus 32 ~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~~~ 93 (252)
T 2h88_B 32 TYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDPDL 93 (252)
T ss_dssp EEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCCCT
T ss_pred EEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhHcC
Confidence 35677777 9999999999862 356699999999999986 543 47788887654
Q ss_pred --CeEEEc
Q 029951 146 --DVEVET 151 (185)
Q Consensus 146 --Dl~Iel 151 (185)
.++|+-
T Consensus 94 g~~~~iep 101 (252)
T 2h88_B 94 SKTTKIYP 101 (252)
T ss_dssp TSCEEEEC
T ss_pred CCceEEec
Confidence 266664
No 36
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=97.32 E-value=0.0002 Score=61.41 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=33.4
Q ss_pred EEEEEeCC-CchHHHHHHHCCC------CCCCCCCcccccCceEEEecCc
Q 029951 75 VHEFLVPE-DQYILHTAESQNI------TLPFACRHGCCTSCAVRIKSGQ 117 (185)
Q Consensus 75 ~~~~~v~~-g~tLLdaa~~~GI------~ip~~C~~G~CGtC~V~v~~G~ 117 (185)
.+++++++ |.+||+++++.+. ....+|+.|.||+|.|.| +|.
T Consensus 56 ~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~ 104 (282)
T 3vr8_B 56 KFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGE 104 (282)
T ss_pred EEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCE
Confidence 46677777 9999999998664 245789999999999986 554
No 37
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=97.12 E-value=0.00058 Score=54.40 Aligned_cols=43 Identities=19% Similarity=0.385 Sum_probs=36.5
Q ss_pred CCcEE-EEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEe
Q 029951 72 RGVVH-EFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 72 ~G~~~-~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
+|+.+ .++++++++||+.+++. |+ ....+|+.|.||.|.|.|-
T Consensus 10 NG~~~~~~~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd 55 (164)
T 3nvw_A 10 NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 55 (164)
T ss_dssp TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CCEEEEEecCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence 58553 45789999999999985 76 6899999999999999874
No 38
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.10 E-value=0.0007 Score=61.53 Aligned_cols=47 Identities=19% Similarity=0.369 Sum_probs=39.9
Q ss_pred EEEEeCCCCcEEEE-EeCCCchHHHHHHHCCC-CCCCCCCcccccCceEEE
Q 029951 65 VTVHDRFRGVVHEF-LVPEDQYILHTAESQNI-TLPFACRHGCCTSCAVRI 113 (185)
Q Consensus 65 Vtv~~~~~G~~~~~-~v~~g~tLLdaa~~~GI-~ip~~C~~G~CGtC~V~v 113 (185)
|+|.. ||+.+++ +++++++||+++++.|+ ....+|+.|.||+|.|.|
T Consensus 3 ~~~~v--Ng~~~~~~~~~~~~~Ll~~Lr~~~l~g~k~gC~~G~CGaCtV~v 51 (462)
T 2w3s_A 3 IAFLL--NGETRRVRIEDPTQSLLEWLRAEGLTGTKEGCNEGDCGACTVMI 51 (462)
T ss_dssp EEEEE--TTEEEEEECSCTTCBHHHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred EEEEE--CCEEEEEecCCCCCcHHHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence 45544 6877777 77899999999997787 489999999999999988
No 39
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=97.04 E-value=0.0011 Score=64.78 Aligned_cols=50 Identities=18% Similarity=0.524 Sum_probs=42.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSG 116 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G 116 (185)
+|+|.. ||+.++++++++++||+++++. |. ....+|+.|.||+|.|.| +|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~g~CGaCtv~v-dg 54 (907)
T 1vlb_A 3 QKVITV--NGIEQNLFVDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DG 54 (907)
T ss_dssp EEEEEE--TTEEEEEEECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEEEE--CCEEEEEecCCCChHHHHHHHhcCCCeecCCCCCCCcCccEEEE-CC
Confidence 455554 6988899999999999999984 66 689999999999999987 44
No 40
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=96.81 E-value=0.0013 Score=64.11 Aligned_cols=50 Identities=24% Similarity=0.569 Sum_probs=42.0
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEecC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIKSG 116 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~~G 116 (185)
+|+|.. ||+.++++++++++||+++++. |+ ....+|+.|.||+|.|.| +|
T Consensus 3 ~~~~~~--ng~~~~~~~~~~~~ll~~Lr~~~~l~g~k~gC~~G~CGaCtv~v-dg 54 (907)
T 1dgj_A 3 TKTLIV--NGMARRLLVSPNDLLVDVLRSQLQLTSVKVGCGKGQCGACTVIL-DG 54 (907)
T ss_dssp EEECEE--TTBCCEEEECTTCBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHHHhcCCCccCCCCCCCCcCceEEEE-CC
Confidence 455554 6888899999999999999984 76 689999999999999987 44
No 41
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=95.70 E-value=0.017 Score=51.74 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=34.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC----CCCCC-ccc--ccCceEEE
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL----PFACR-HGC--CTSCAVRI 113 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i----p~~C~-~G~--CGtC~V~v 113 (185)
.|+|.. || +.+++.+|+||++|+.++|+++ +.. + .|. |+.|.|.|
T Consensus 15 ~v~~~~--dg--~~~~~~~g~ti~~a~~~~g~~~~~~~~~~-~p~g~~~~~~c~v~v 66 (493)
T 1y56_A 15 KVTIYF--EG--KELEAYEGEKLPVALLANEIYWLTTSNEG-RKRGAFTFGPVPMTV 66 (493)
T ss_dssp EEEEEE--TT--EEEEEETTCBHHHHHHHTTCCCCEECTTS-CEECSSSSSCCEEBS
T ss_pred eEEEEE--CC--EEEEecCCCHHHHHHHHCCCceecCCCCC-CCCccccceEEEEEE
Confidence 355555 68 7899999999999999999965 222 3 455 78899876
No 42
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=94.54 E-value=0.039 Score=55.98 Aligned_cols=49 Identities=14% Similarity=0.297 Sum_probs=39.3
Q ss_pred EEEEEeCCCCcEEEE-EeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEe
Q 029951 64 KVTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~-~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
.|+|.- ||+.+++ .++++.+||+.+++. |+ ....+|+.|.||.|.|.|-
T Consensus 5 ~i~~~v--Ng~~~~~~~~~p~~~ll~~LR~~~~ltgtk~gC~~g~CGaCtV~~~ 56 (1332)
T 3unc_A 5 ELVFFV--NGKKVVEKNADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS 56 (1332)
T ss_dssp CEEEEE--TTEEEEETTCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred cEEEEE--CCEEEEeecCCCCCCHHHHHhhhcCCCCcCCCcCCCCCCCcEEEEe
Confidence 355554 6865554 589999999999984 76 4889999999999999883
No 43
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=91.86 E-value=0.35 Score=47.11 Aligned_cols=47 Identities=4% Similarity=-0.030 Sum_probs=38.8
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCC-----------CcccccCceEEEe
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFAC-----------RHGCCTSCAVRIK 114 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C-----------~~G~CGtC~V~v~ 114 (185)
.|+|.. +| +.+++.+|+||+.|++.+|+.+...| ..|.|..|.+.+.
T Consensus 22 ~~~~~~--dG--~~~~~~~g~tv~~aL~~~Gv~~~~~s~~~~~prg~~~~~~~c~~~~v~v~ 79 (965)
T 2gag_A 22 ALSLTV--DG--AKLSAFRGDTVASALLANGVRRAGNSLYLDRPRGIFAAGVEEPNALVTVS 79 (965)
T ss_dssp EEEEEE--TT--EEEEEEETCBHHHHHHHTTCCBCSCCTTTCCCCBCCCSSTTCCSCEEEEC
T ss_pred eEEEEE--CC--EEEEecCCCHHHHHHHHcCCeEeecCCCCCCCcccccCCccCCceEEEEc
Confidence 456655 68 88999999999999999999865544 4588999999986
No 44
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=91.24 E-value=0.25 Score=50.10 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=38.3
Q ss_pred eEEEEEeCCCCcEEEE-EeCCCchHHHHHHHC-CC-CCCCCCCcccccCceEEEe
Q 029951 63 HKVTVHDRFRGVVHEF-LVPEDQYILHTAESQ-NI-TLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~-~v~~g~tLLdaa~~~-GI-~ip~~C~~G~CGtC~V~v~ 114 (185)
-.++|.. ||+.+++ .+++..|||+.++.+ |+ .-...|+.|-||.|.|.|-
T Consensus 8 ~~l~F~v--NG~~v~~~~~~p~~tLl~~LR~~~~ltGTK~gC~EG~CGACtV~v~ 60 (1335)
T 3zyv_A 8 DELIFFV--NGKKVTERNADPEVNLLFYLRKVIRLTGTKYGCGGGDCGACTVMIS 60 (1335)
T ss_dssp CCEEEEE--TTEEEEESSCCTTCBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEEE
T ss_pred CeEEEEE--CCEEEEeCCCCcCccHHHHHhccCCCcccccccCCCCCcceEEEEe
Confidence 3466665 6854443 267999999999984 65 4788999999999999874
No 45
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=54.48 E-value=5.1 Score=32.18 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=20.7
Q ss_pred hHHHHHHHCCCCC------CCCCCcccccCceEEEe
Q 029951 85 YILHTAESQNITL------PFACRHGCCTSCAVRIK 114 (185)
Q Consensus 85 tLLdaa~~~GI~i------p~~C~~G~CGtC~V~v~ 114 (185)
.+.+ +.+.|++. ...||.|.||.|.+...
T Consensus 205 ~v~~-l~~~gv~~~vs~e~~m~CG~G~C~~C~~~~~ 239 (262)
T 1ep3_B 205 AVAK-KYDQLERLYISMESRMACGIGACYACVEHDK 239 (262)
T ss_dssp HHHH-HTTTCSSEEEECCCCCSSSSSSSCTTEEEET
T ss_pred HHHH-HHhCCCCEEEEecccccCcccccccCCcccc
Confidence 3344 55567652 36899999999999863
No 46
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=54.26 E-value=18 Score=25.87 Aligned_cols=40 Identities=18% Similarity=0.100 Sum_probs=29.5
Q ss_pred CCCCCceEEEEEeCCCCcEEEEEeCCCchHHHH----HHHCCCCC
Q 029951 57 SPSIPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITL 97 (185)
Q Consensus 57 ~~~~~~~~Vtv~~~~~G~~~~~~v~~g~tLLda----a~~~GI~i 97 (185)
.+.+++++|+|... .|+..++++.+.+||.+. +.+.|++.
T Consensus 23 ~~~~~mm~I~VKtl-~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~ 66 (100)
T 1uh6_A 23 EGAATMIEVVCNDR-LGKKVRVKCNTDDTIGDLKKLIAAQTGTRW 66 (100)
T ss_dssp SSCCCEEEEEEECS-SSSCEEEEEETTSBHHHHHHHHHHHHCCCG
T ss_pred CCCCCeEEEEEECC-CCCEEEEEeCCCCcHHHHHHHHHHHhCCCH
Confidence 34477899999874 578889999999998764 23456653
No 47
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=41.62 E-value=1.1e+02 Score=22.83 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=26.5
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHH----HHHCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT----AESQNITL 97 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLda----a~~~GI~i 97 (185)
+.+++|+|... +|+...+++.+.+||.+. ....|++.
T Consensus 18 ~~~m~i~Vk~~-~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 58 (172)
T 3u30_A 18 GSHMQIFVKTL-TGKTITLEVEPSDTIENVKAKIQDKEGIPP 58 (172)
T ss_dssp -CCEEEEEEET-TTEEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCcEEEEEEeC-CCCEEEEEECCCCcHHHHHHHHHHHHCcCh
Confidence 45678888853 688889999999999873 33456543
No 48
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=38.98 E-value=58 Score=21.58 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=21.2
Q ss_pred EEEEEeCCCchHHHHHHHCCCCCC
Q 029951 75 VHEFLVPEDQYILHTAESQNITLP 98 (185)
Q Consensus 75 ~~~~~v~~g~tLLdaa~~~GI~ip 98 (185)
..++++++|.|+.|.+++.|++..
T Consensus 12 ~~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 12 TSEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEEECSTTCSHHHHHHTTCCCSS
T ss_pred ceeEEcCCCCcHHHHHHHcCCCcc
Confidence 466899999999999999999874
No 49
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=38.15 E-value=62 Score=21.69 Aligned_cols=34 Identities=3% Similarity=-0.107 Sum_probs=26.0
Q ss_pred CCCCceEEEEEeCCCCcEEEEEeCCCchHHHHHHH
Q 029951 58 PSIPTHKVTVHDRFRGVVHEFLVPEDQYILHTAES 92 (185)
Q Consensus 58 ~~~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~ 92 (185)
+.+.+++|+|... +|....+++....||.+.-.+
T Consensus 3 ~~~~~m~i~Vk~~-~g~~~~~~v~~~~TV~~LK~~ 36 (95)
T 1wia_A 3 SGSSGINVRLKFL-NDTEELAVARPEDTVGTLKSK 36 (95)
T ss_dssp CCCCSEEEEEEET-TTEEEEEEECSSSBHHHHHHH
T ss_pred CCCCeEEEEEEeC-CCCEEEEEECCCCcHHHHHHH
Confidence 3456788888763 577788999999999886554
No 50
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=37.98 E-value=11 Score=26.37 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=19.7
Q ss_pred hHHHHHHHCCCC-----CCCCCCcccccCce
Q 029951 85 YILHTAESQNIT-----LPFACRHGCCTSCA 110 (185)
Q Consensus 85 tLLdaa~~~GI~-----ip~~C~~G~CGtC~ 110 (185)
..|+.+++.|.- .+.+|..|.|++|.
T Consensus 35 rDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~ 65 (87)
T 2k02_A 35 AMLERMEAMGKVVRISETSEGCLSGSCKSCP 65 (87)
T ss_dssp HHHHHHHTTCCSEEEEEECCSSCSSSSSSCS
T ss_pred HHHHHHHHCCCEEEEecCCCCCCCCCCCCCC
Confidence 567888888863 24689888899993
No 51
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=37.38 E-value=44 Score=23.98 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=32.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEec
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKS 115 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~~ 115 (185)
|..-.|++... +++...++|.+|.||-+|+.++= .. |+=.+-.|.|....
T Consensus 11 ~~~~~irvhLP-NqQrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~~ 60 (96)
T 3ny5_A 11 MQKPIVRVFLP-NKQRTVVPARCGVTVRDSLKKAL-MM----RGLIPECCAVYRIQ 60 (96)
T ss_dssp CSSCEEEEEET-TTEEEEEECCTTCBHHHHHHHHH-HT----TTCCGGGEEEEECC
T ss_pred hhhCEEEEECC-CCceEEEEecCCcCHHHHHHHHH-HH----cCCChHHeEEEEcc
Confidence 44556666543 57667899999999999876541 00 12256778887653
No 52
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=37.34 E-value=46 Score=23.87 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCcEEEEEe-CCCchHHHHHHHCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLV-PEDQYILHTAESQN 94 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v-~~g~tLLdaa~~~G 94 (185)
+..++|+|... +|....|.+ +.+++|++++.++.
T Consensus 6 ~k~i~i~v~~~-~~~~~~~~v~t~g~tL~dvLk~~~ 40 (101)
T 3u7z_A 6 EKHITVTVIHG-DQTENVFEFDTDAKYLGEVLESEN 40 (101)
T ss_dssp CEEEEEEEECT-TSCEEEEEEEECCSBHHHHHHHTT
T ss_pred eeEEEEEEEcC-CCceeEEEEcCCccHHHHHHHHcC
Confidence 45678888764 455443333 78899999999987
No 53
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=37.13 E-value=75 Score=21.58 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=25.8
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHHH----HCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTAE----SQNITL 97 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~----~~GI~i 97 (185)
.++++|+|.. .|+.+.+++++..||.+.=. ..||+.
T Consensus 15 ~~~~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip~ 54 (95)
T 1v86_A 15 KELVDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLPP 54 (95)
T ss_dssp CCCEEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSCS
T ss_pred CceEEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCH
Confidence 4567888875 47788999999999877533 356553
No 54
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=36.58 E-value=41 Score=23.77 Aligned_cols=29 Identities=17% Similarity=0.069 Sum_probs=24.2
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
.++.+|.|+.. .|+...+.|.+.+||.+.
T Consensus 19 ~~mIqI~Vk~~-~Gkk~~v~v~p~DTI~~L 47 (93)
T 3plu_A 19 SHMIEVVVNDR-LGKKVRVKCLGEDSVGDF 47 (93)
T ss_dssp -CEEEEEEECT-TSCEEEEEEETTSBHHHH
T ss_pred CceEEEEEECC-CCCEEEEEECCcCHHHHH
Confidence 57889999874 688899999999999864
No 55
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=32.47 E-value=54 Score=22.54 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=28.4
Q ss_pred EEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEe
Q 029951 65 VTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 65 Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (185)
|++... +++...+++.+|.||-||+.++= .. |+=.+-.|.|...
T Consensus 4 irvhLP-n~QrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~V~~~ 47 (77)
T 1c1y_B 4 IRVFLP-NKQRTVVNVRNGMSLHDCLMKAL-KV----RGLQPECCAVFRL 47 (77)
T ss_dssp EEEEET-TTEEEEEECCTTCBHHHHHHHHH-HT----TTCCGGGEEEEEE
T ss_pred EEEECC-CCceEEEEecCCcCHHHHHHHHH-HH----cCCCHHHeEEEEe
Confidence 444432 56667899999999999886540 00 1235677778765
No 56
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=32.08 E-value=19 Score=24.40 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=19.1
Q ss_pred hHHHHHHHCCCC-----CCCCCCcccccCce
Q 029951 85 YILHTAESQNIT-----LPFACRHGCCTSCA 110 (185)
Q Consensus 85 tLLdaa~~~GI~-----ip~~C~~G~CGtC~ 110 (185)
.-|+.+++.|.- -...|..|.|++|.
T Consensus 35 rdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~ 65 (78)
T 1xn7_A 35 AMLQQLESMGKAVRIQEEPDGCLSGSCKSCP 65 (78)
T ss_dssp HHHHHHHHHTSEEEECCCCCCCCCSSCCCCC
T ss_pred HHHHHHHHCCCEEEecCcCCCCCCCCCCCCC
Confidence 457778888863 35678878899994
No 57
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=32.04 E-value=62 Score=20.67 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=23.0
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
|..++|+|... +|....+++.+.+|+.+.
T Consensus 1 m~~m~i~vk~~-~g~~~~~~v~~~~tv~~l 29 (79)
T 2uyz_B 1 MEYIKLKVIGQ-DSSEIHFKVKMTTHLKKL 29 (79)
T ss_dssp CCEEEEEEECT-TCCEEEEEEETTSCTHHH
T ss_pred CCeEEEEEECC-CCCEEEEEECCCChHHHH
Confidence 45678888864 688889999999988764
No 58
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=31.25 E-value=97 Score=20.47 Aligned_cols=37 Identities=14% Similarity=0.118 Sum_probs=26.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHH----HHCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITL 97 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa----~~~GI~i 97 (185)
...++|+|... +|....+++.+..|+.+.= ...|++.
T Consensus 15 ~~~m~i~Vk~~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~ 55 (91)
T 3v6c_B 15 RGSMQIFVNTL-TGTHITLEVEPSDTIENVKAKIQDKEGIPP 55 (91)
T ss_dssp CCSEEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCeEEEEEEeC-CCCEEEEEECCCCCHHHHHHHHHhhhCCCh
Confidence 45678888864 6888899999999998743 3346554
No 59
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=31.15 E-value=44 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=22.1
Q ss_pred EEEEEeCCCCcEEEEEeC--CCchHHHHHHHCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVP--EDQYILHTAESQNIT 96 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~--~g~tLLdaa~~~GI~ 96 (185)
+|+| +| ..++++ ++.||.+.+...|++
T Consensus 2 ~I~v----NG--e~~e~~~~~~~Tl~~LL~~l~~~ 30 (78)
T 2k5p_A 2 NLTV----NG--KPSTVDGAESLNVTELLSALKVA 30 (78)
T ss_dssp EEEE----TT--EEEECSSCSCEEHHHHHHHHTCS
T ss_pred EEEE----CC--EEEEcCCCCCCcHHHHHHHcCCC
Confidence 5666 57 567788 899999999999987
No 60
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.54 E-value=97 Score=20.02 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=25.9
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHH----HHCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNIT 96 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa----~~~GI~ 96 (185)
+++++|+|... +|....+++.+..|+.+.- ...|++
T Consensus 5 ~~~m~i~Vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 44 (87)
T 1wh3_A 5 SSGIQVFVKNP-DGGSYAYAINPNSFILGLKQQIEDQQGLP 44 (87)
T ss_dssp SSSEEEEEEET-TTEEEEEEECSSSBHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEEcC-CCCEEEEEeCCCChHHHHHHHHHHHhCCC
Confidence 35678888764 5777889999999987743 345554
No 61
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=29.08 E-value=48 Score=22.91 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=22.2
Q ss_pred ceEEEEEeCCCCcEEEEEeCCC-chHHHHHHHCCCC
Q 029951 62 THKVTVHDRFRGVVHEFLVPED-QYILHTAESQNIT 96 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g-~tLLdaa~~~GI~ 96 (185)
+++|+| +| ..++++++ .||.+.+...++.
T Consensus 20 ~M~I~v----NG--e~~el~~~~~Tv~dLL~~L~~~ 49 (87)
T 1tyg_B 20 RHMLQL----NG--KDVKWKKDTGTIQDLLASYQLE 49 (87)
T ss_dssp --CEEE----TT--EEECCSSSCCBHHHHHHHTTCT
T ss_pred ceEEEE----CC--EEEECCCCCCcHHHHHHHhCCC
Confidence 346777 57 67888998 9999999999865
No 62
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=28.43 E-value=52 Score=24.05 Aligned_cols=45 Identities=13% Similarity=-0.057 Sum_probs=28.9
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEe
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (185)
.|++... +++...++|.+|.||-||+.++= .. |+=.+-.|.|...
T Consensus 20 ~ir~hLP-NqQrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~ 64 (107)
T 1rrb_A 20 TIRVFLP-NKQRTVVNVRNGMSLHDCLMKAL-KV----RGLQPECCAVFRL 64 (107)
T ss_dssp EEEEECT-TTCCEEEECCTTCBHHHHHHHHH-HH----HTCCTTTEEEEEC
T ss_pred eEEEECC-CCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHceeEEc
Confidence 4555543 46667899999999999876540 00 1224667888765
No 63
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=27.06 E-value=58 Score=21.84 Aligned_cols=35 Identities=14% Similarity=0.099 Sum_probs=24.4
Q ss_pred CceEEEEEeCCCCcEEEE-EeCCCchHHHHH----HHCCCCC
Q 029951 61 PTHKVTVHDRFRGVVHEF-LVPEDQYILHTA----ESQNITL 97 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~-~v~~g~tLLdaa----~~~GI~i 97 (185)
.+++|+|.. .|+.+.+ +++++.|+.+.= ...||+.
T Consensus 6 ~~m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~ 45 (90)
T 1v5t_A 6 SGLPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLP 45 (90)
T ss_dssp CSCCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCT
T ss_pred ceEEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCH
Confidence 456777776 4777788 889999987753 3466653
No 64
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=27.01 E-value=60 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=18.0
Q ss_pred CCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 72 RGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 72 ~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+| ..++++.|.|+++.+...+..
T Consensus 9 ~g--~~~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 9 KG--EIKRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp TC--CEEEECTTCBHHHHHHHHCSH
T ss_pred CC--CEEEcCCCCcHHHHHHHHhhc
Confidence 57 467889999999999876543
No 65
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=26.83 E-value=72 Score=22.81 Aligned_cols=45 Identities=13% Similarity=-0.062 Sum_probs=28.6
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEe
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (185)
.|++... +++...++|.+|.||-||+.++= .. |+=.+-.|.|...
T Consensus 19 ~irvhLP-NqQrT~V~VrpG~tlrdAL~KaL-k~----R~L~pe~C~Vy~~ 63 (95)
T 2l05_A 19 IVRVFLP-NKQRTVVPARCGVTVRDSLKKAL-MM----RGLIPECCAVYRI 63 (95)
T ss_dssp EEEEEET-TTEEEEEECCTTCBHHHHHHHHH-HH----HTCCGGGEEEEEE
T ss_pred EEEEECC-CCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHcEEEEc
Confidence 3444432 57667899999999999886540 00 1225667777654
No 66
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=26.83 E-value=29 Score=24.59 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=22.9
Q ss_pred eEEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 63 HKVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 63 ~~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
..|.+-.........+++++|.|+.+++++.|+.
T Consensus 15 v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~ 48 (97)
T 2hj1_A 15 IEIAYAFPERYYLKSFQVDEGITVQTAITQSGIL 48 (97)
T ss_dssp EEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHH
T ss_pred EEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCC
Confidence 3444444222223456788999999999999984
No 67
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=26.52 E-value=1.3e+02 Score=19.28 Aligned_cols=37 Identities=14% Similarity=0.062 Sum_probs=26.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHH----HHCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTA----ESQNITL 97 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa----~~~GI~i 97 (185)
...++|+|... +|....+++.+..|+.+.- ...|++.
T Consensus 10 ~~~m~i~vk~~-~g~~~~~~v~~~~tV~~lK~~i~~~~gip~ 50 (88)
T 3dbh_I 10 GGSMLIKVKTL-TGKEIEIDIEPTDKVERIKERVEEKEGIPP 50 (88)
T ss_dssp CCCEEEEEECT-TSCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred CCcEEEEEEcC-CCCEEEEEECCCCCHHHHHHHHHHHHCcCH
Confidence 45678888864 6888899999999987643 3346553
No 68
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=26.12 E-value=1.1e+02 Score=19.53 Aligned_cols=28 Identities=7% Similarity=0.048 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
++++|+|... +|....+++.+..|+.+.
T Consensus 4 ~~m~i~vk~~-~g~~~~~~v~~~~TV~~l 31 (85)
T 2wyq_A 4 MAVTITLKTL-QQQTFKIRMEPDETVKVL 31 (85)
T ss_dssp CCEEEEEEET-TSCEEEEEECTTSBHHHH
T ss_pred ceEEEEEEEC-CCCEEEEEECCCCCHHHH
Confidence 3467888764 577789999999998764
No 69
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.59 E-value=98 Score=21.09 Aligned_cols=37 Identities=11% Similarity=-0.088 Sum_probs=26.7
Q ss_pred CCceEEEEEeCCCCcEE-EEEeCCCchHHHHH----HHCCCCCC
Q 029951 60 IPTHKVTVHDRFRGVVH-EFLVPEDQYILHTA----ESQNITLP 98 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~-~~~v~~g~tLLdaa----~~~GI~ip 98 (185)
..+++|+|.. .|+.+ .+++..+.|+.+.= ...||+..
T Consensus 5 ~~~m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~ 46 (96)
T 1wgg_A 5 SSGYSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPA 46 (96)
T ss_dssp CCEEEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTT
T ss_pred CcEEEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHH
Confidence 3567888886 47778 59999999987753 34676643
No 70
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=25.52 E-value=75 Score=20.92 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.1
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~i 97 (185)
+|+| +| ..+++ ++.||.+.+...|++.
T Consensus 2 ~I~v----NG--~~~e~-~~~Tl~~LL~~l~~~~ 28 (73)
T 2kl0_A 2 LVTI----NG--EQREV-QSASVAALMTELDCTG 28 (73)
T ss_dssp CEEE----TT--EEECC-CCSBHHHHHHHTTCCS
T ss_pred EEEE----CC--EEEEc-CCCcHHHHHHHcCCCC
Confidence 4556 47 56677 8899999999999873
No 71
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=25.34 E-value=1.1e+02 Score=19.38 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.5
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHH
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA 90 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa 90 (185)
+.++|+|... +|+...+++.+..|+.+.=
T Consensus 3 ~~m~i~Vk~~-~g~~~~~~v~~~~tV~~lK 31 (79)
T 3phx_B 3 EPLSILVRNN-KGRSSTYEVRLTQTVAHLK 31 (79)
T ss_dssp CCEEEEEECT-TSCEEEEEECTTSBHHHHH
T ss_pred CCEEEEEEeC-CCCEEEEEECCcChHHHHH
Confidence 3467888864 6888899999999987643
No 72
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=24.78 E-value=84 Score=22.04 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=28.3
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCCCCCCCCcccccCceEEEe
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIK 114 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ip~~C~~G~CGtC~V~v~ 114 (185)
.|++... +++...++|.+|.||-+|+.++= .. |+=.+-.|.|...
T Consensus 9 ~irvhLP-n~QrT~V~VrpG~tlrdaL~KaL-k~----R~L~pe~C~Vy~~ 53 (86)
T 1wxm_A 9 TVKVYLP-NKQRTVVTVRDGMSVYDSLDKAL-KV----RGLNQDCCVVYRL 53 (86)
T ss_dssp EEEEECS-SSCEEEEECCSSCBSHHHHHHHH-HT----TTCCSSSEEEEEE
T ss_pred eEEEECC-CCCeEEEEecCCcCHHHHHHHHH-HH----cCCCHHHeEEEEc
Confidence 4555432 56667899999999988876530 00 1224666777654
No 73
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.34 E-value=1.1e+02 Score=19.44 Aligned_cols=27 Identities=15% Similarity=0.107 Sum_probs=21.5
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 62 THKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 62 ~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
+++|+|... +|....+++++..|+.+.
T Consensus 3 ~m~i~vk~~-~g~~~~~~v~~~~tV~~l 29 (85)
T 3mtn_B 3 HMQIFVKTL-TGKTITLEVEPSDTIENV 29 (85)
T ss_dssp CEEEEEECT-TSCEEEEEECTTCBHHHH
T ss_pred eEEEEEEcC-CCCEEEEEECCCCCHHHH
Confidence 467888764 578889999999999874
No 74
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=23.71 E-value=1.1e+02 Score=20.03 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=22.8
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHH
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA 90 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa 90 (185)
.+++|+|... +|....+++.+..|+.+.-
T Consensus 4 ~~m~i~Vk~~-~g~~~~~~v~~~~tV~~lK 32 (90)
T 4dwf_A 4 DSLEVLVKTL-DSQTRTFIVGAQMNVKEFK 32 (90)
T ss_dssp CEEEEEEEET-TCCEEEEEEETTCBHHHHH
T ss_pred cEEEEEEEcC-CCCEEEEEECCCCCHHHHH
Confidence 4577888774 5888899999999988753
No 75
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.37 E-value=1.1e+02 Score=20.42 Aligned_cols=29 Identities=10% Similarity=-0.101 Sum_probs=20.6
Q ss_pred CCceEEEEEeCCCCc--EEEEEeCCCchHHHH
Q 029951 60 IPTHKVTVHDRFRGV--VHEFLVPEDQYILHT 89 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~--~~~~~v~~g~tLLda 89 (185)
|.+++|+|... +|. ..++++++..|+.+.
T Consensus 5 ~~~m~i~Vk~~-~~~~~~~~v~v~~~~TV~~l 35 (93)
T 1wgd_A 5 SSGVTLLVKSP-NQRHRDLELSGDRGWSVGHL 35 (93)
T ss_dssp SCCCEEEEECS-SSSCCCEEEECCTTSCHHHH
T ss_pred CcEEEEEEEeC-CCCeEEEEEecCCCCcHHHH
Confidence 56678888864 454 456677799998774
No 76
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=22.50 E-value=36 Score=19.61 Aligned_cols=22 Identities=9% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEEeCCCchHHHHHHHCCCCC
Q 029951 76 HEFLVPEDQYILHTAESQNITL 97 (185)
Q Consensus 76 ~~~~v~~g~tLLdaa~~~GI~i 97 (185)
....+.+|+||-..|.+.|+.+
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~ 24 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNI 24 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCH
T ss_pred EEEEEcCCCcHHHHHHHHCcCH
Confidence 3567899999999999988764
No 77
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=22.24 E-value=1.6e+02 Score=20.85 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=22.2
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHH
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHT 89 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLda 89 (185)
..++|+|... +|...++++++..|+.+.
T Consensus 6 ~~M~I~Vk~l-~g~~~~v~V~~~~TV~dL 33 (105)
T 1v2y_A 6 SGMTVRVCKM-DGEVMPVVVVQNATVLDL 33 (105)
T ss_dssp CSEEEEEECS-SSCEEEEEECTTCBHHHH
T ss_pred CcEEEEEEec-CCCEEEEEECCCChHHHH
Confidence 3478888753 688899999999998763
No 78
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=20.50 E-value=1.4e+02 Score=19.60 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=22.3
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCchHHHHH
Q 029951 61 PTHKVTVHDRFRGVVHEFLVPEDQYILHTA 90 (185)
Q Consensus 61 ~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa 90 (185)
.+++|+|... +|....+++.+..|+.+.-
T Consensus 3 ~~m~I~Vk~~-~g~~~~~~v~~~~TV~~LK 31 (88)
T 2hj8_A 3 EPLSILVRNN-KGRSSTYEVRLTQTVAHLK 31 (88)
T ss_dssp CEEEEEEEET-TSCEEEEEEESSSBHHHHH
T ss_pred ccEEEEEECC-CCCEEEEEECCCCcHHHHH
Confidence 4578888864 5777889999999987743
No 79
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.47 E-value=2.4e+02 Score=20.13 Aligned_cols=29 Identities=31% Similarity=0.306 Sum_probs=22.6
Q ss_pred CCceEEEEEeCCCCcEEEEEeCCCchHHHHH
Q 029951 60 IPTHKVTVHDRFRGVVHEFLVPEDQYILHTA 90 (185)
Q Consensus 60 ~~~~~Vtv~~~~~G~~~~~~v~~g~tLLdaa 90 (185)
+.+++|+|... |....+++..+.||.+.-
T Consensus 30 ~~~m~I~Vk~~--g~~~~l~v~~~~TV~~LK 58 (125)
T 1j8c_A 30 PKIIKVTVKTP--KEKEEFAVPENSSVQQFK 58 (125)
T ss_dssp CCCEEEEEECS--SCEEEEEECTTCCHHHHH
T ss_pred CCcEEEEEEeC--CeEEEEEECCCCcHHHHH
Confidence 45688888863 777889999999987643
No 80
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=20.07 E-value=63 Score=20.46 Aligned_cols=27 Identities=7% Similarity=0.096 Sum_probs=21.2
Q ss_pred EEEEEeCCCCcEEEEEeCCCchHHHHHHHCCCC
Q 029951 64 KVTVHDRFRGVVHEFLVPEDQYILHTAESQNIT 96 (185)
Q Consensus 64 ~Vtv~~~~~G~~~~~~v~~g~tLLdaa~~~GI~ 96 (185)
+|++ +| ..++++++.|+.+.+...++.
T Consensus 2 ~i~v----Ng--~~~~~~~~~tv~~ll~~l~~~ 28 (66)
T 1f0z_A 2 QILF----ND--QAMQCAAGQTVHELLEQLDQR 28 (66)
T ss_dssp CEEE----SS--CEECCCTTCCHHHHHHHHTCC
T ss_pred EEEE----CC--EEEEcCCCCcHHHHHHHcCCC
Confidence 4556 46 567789999999999998765
No 81
>2lg4_A Aurelin; antimicrobial protein; NMR {Aurelia aurita}
Probab=25.38 E-value=22 Score=21.54 Aligned_cols=17 Identities=24% Similarity=0.759 Sum_probs=14.1
Q ss_pred HCCCCCCCCCCcccccCc
Q 029951 92 SQNITLPFACRHGCCTSC 109 (185)
Q Consensus 92 ~~GI~ip~~C~~G~CGtC 109 (185)
++|..+.+.|.+ .||.|
T Consensus 24 ~ng~~~r~~C~k-TCG~C 40 (40)
T 2lg4_A 24 RNGVKLRANCKK-TCGLC 40 (40)
Confidence 678889999986 68877
Done!