Query 029952
Match_columns 185
No_of_seqs 160 out of 723
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:13:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/029952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4005 Transcription factor X 99.5 3.4E-13 7.3E-18 116.8 15.2 85 74-158 65-149 (292)
2 smart00338 BRLZ basic region l 99.5 5.7E-13 1.2E-17 92.8 9.5 62 75-136 2-63 (65)
3 PF00170 bZIP_1: bZIP transcri 99.4 1.9E-12 4.1E-17 90.0 9.4 61 76-136 3-63 (64)
4 KOG4343 bZIP transcription fac 99.3 4.5E-12 9.8E-17 119.4 10.6 98 69-166 272-374 (655)
5 PF07716 bZIP_2: Basic region 99.2 2.6E-10 5.7E-15 77.2 8.8 51 76-127 3-53 (54)
6 KOG3584 cAMP response element 99.0 4.7E-10 1E-14 99.6 7.2 54 77-130 290-343 (348)
7 KOG0709 CREB/ATF family transc 98.9 2.7E-09 5.9E-14 99.3 6.6 72 73-151 246-317 (472)
8 PF03131 bZIP_Maf: bZIP Maf tr 98.0 6E-08 1.3E-12 72.2 -6.3 56 74-129 26-81 (92)
9 KOG0837 Transcriptional activa 98.0 3.6E-05 7.9E-10 67.8 8.3 50 80-129 208-257 (279)
10 KOG4571 Activating transcripti 97.9 8.4E-05 1.8E-09 66.3 9.8 55 74-128 222-277 (294)
11 KOG3119 Basic region leucine z 97.8 0.00039 8.5E-09 61.0 12.5 50 74-123 190-239 (269)
12 KOG4196 bZIP transcription fac 97.4 0.0019 4.2E-08 51.8 10.0 67 77-157 52-118 (135)
13 PF06156 DUF972: Protein of un 97.1 0.0037 8E-08 48.3 8.6 53 103-155 5-57 (107)
14 COG3074 Uncharacterized protei 97.0 0.0072 1.6E-07 44.1 8.2 55 100-154 19-73 (79)
15 PRK13169 DNA replication intia 96.9 0.0074 1.6E-07 47.0 8.5 53 103-155 5-57 (110)
16 PF06005 DUF904: Protein of un 96.9 0.021 4.6E-07 41.2 10.1 58 100-157 5-69 (72)
17 PF06005 DUF904: Protein of un 96.7 0.045 9.8E-07 39.5 10.7 49 101-149 20-68 (72)
18 PRK15422 septal ring assembly 96.7 0.016 3.5E-07 42.8 8.3 57 100-156 19-75 (79)
19 KOG3863 bZIP transcription fac 96.5 0.0053 1.1E-07 59.6 6.4 64 80-157 492-555 (604)
20 TIGR02449 conserved hypothetic 96.5 0.048 1E-06 38.9 9.5 59 101-159 2-60 (65)
21 COG4467 Regulator of replicati 96.3 0.023 5E-07 44.5 7.4 47 106-152 8-54 (114)
22 TIGR02894 DNA_bind_RsfA transc 96.2 0.053 1.2E-06 44.9 9.6 60 100-159 88-150 (161)
23 PF02183 HALZ: Homeobox associ 96.2 0.025 5.3E-07 37.5 6.2 42 110-151 2-43 (45)
24 PF07989 Microtub_assoc: Micro 96.2 0.086 1.9E-06 38.3 9.6 60 101-160 2-69 (75)
25 PF14197 Cep57_CLD_2: Centroso 96.1 0.092 2E-06 37.6 9.1 57 98-154 11-67 (69)
26 TIGR02449 conserved hypothetic 96.0 0.081 1.7E-06 37.8 8.5 57 99-155 7-63 (65)
27 PF06156 DUF972: Protein of un 95.9 0.054 1.2E-06 41.8 7.9 50 99-148 8-57 (107)
28 PRK10884 SH3 domain-containing 95.9 0.15 3.3E-06 43.4 11.4 10 111-120 137-146 (206)
29 PRK13169 DNA replication intia 95.8 0.063 1.4E-06 41.8 7.9 49 99-147 8-56 (110)
30 KOG4005 Transcription factor X 95.5 0.34 7.4E-06 42.9 12.3 56 105-160 89-144 (292)
31 PF14662 CCDC155: Coiled-coil 95.3 0.16 3.4E-06 43.3 9.1 60 101-160 3-62 (193)
32 PF07888 CALCOCO1: Calcium bin 95.0 0.79 1.7E-05 44.5 14.2 82 80-161 152-233 (546)
33 PF04880 NUDE_C: NUDE protein, 94.7 0.053 1.1E-06 45.0 4.7 53 101-158 2-54 (166)
34 PF08614 ATG16: Autophagy prot 94.7 1.1 2.4E-05 37.1 12.5 52 99-150 130-181 (194)
35 PF10224 DUF2205: Predicted co 94.5 0.42 9.1E-06 35.3 8.5 45 110-154 20-64 (80)
36 PF11559 ADIP: Afadin- and alp 94.4 2 4.4E-05 33.9 13.8 81 80-160 47-127 (151)
37 PF05377 FlaC_arch: Flagella a 94.4 0.33 7.2E-06 33.6 7.2 44 122-165 9-54 (55)
38 PF11559 ADIP: Afadin- and alp 94.2 1 2.2E-05 35.6 10.8 64 94-157 47-110 (151)
39 PRK11637 AmiB activator; Provi 94.1 2 4.3E-05 39.5 13.9 68 93-160 62-129 (428)
40 PRK13729 conjugal transfer pil 94.0 0.64 1.4E-05 44.4 10.8 52 97-148 74-125 (475)
41 PRK10884 SH3 domain-containing 94.0 1.6 3.5E-05 37.1 12.3 40 118-157 123-162 (206)
42 PF09726 Macoilin: Transmembra 93.8 1.5 3.2E-05 43.7 13.3 42 101-142 540-581 (697)
43 PRK15422 septal ring assembly 93.7 0.81 1.8E-05 33.9 8.6 56 99-154 4-59 (79)
44 PF07106 TBPIP: Tat binding pr 93.6 0.5 1.1E-05 38.1 8.2 54 101-154 81-136 (169)
45 KOG3119 Basic region leucine z 93.5 0.61 1.3E-05 41.0 9.2 62 100-161 195-256 (269)
46 COG4026 Uncharacterized protei 93.4 1.1 2.4E-05 39.6 10.3 56 98-153 141-196 (290)
47 PF11932 DUF3450: Protein of u 93.2 2.6 5.7E-05 36.1 12.4 50 97-146 54-103 (251)
48 PF02183 HALZ: Homeobox associ 93.1 0.51 1.1E-05 31.2 6.2 41 117-157 2-42 (45)
49 PF10224 DUF2205: Predicted co 93.1 1 2.2E-05 33.3 8.4 47 102-148 19-65 (80)
50 KOG0612 Rho-associated, coiled 93.1 4 8.7E-05 43.2 15.3 15 14-30 390-404 (1317)
51 PF12325 TMF_TATA_bd: TATA ele 93.0 1.9 4E-05 34.0 10.3 12 145-156 100-111 (120)
52 PF06785 UPF0242: Uncharacteri 92.8 0.7 1.5E-05 42.7 8.6 58 93-150 121-178 (401)
53 PF10805 DUF2730: Protein of u 92.7 2 4.4E-05 32.7 9.9 66 97-162 33-100 (106)
54 PF09304 Cortex-I_coil: Cortex 92.7 2.8 6.1E-05 32.7 10.7 53 81-133 19-71 (107)
55 COG3883 Uncharacterized protei 92.6 1.9 4E-05 38.4 10.8 62 97-158 36-97 (265)
56 PF08614 ATG16: Autophagy prot 92.6 3 6.5E-05 34.5 11.5 70 80-149 118-187 (194)
57 PF00170 bZIP_1: bZIP transcri 92.5 2.4 5.2E-05 29.0 9.5 38 120-157 26-63 (64)
58 PRK04406 hypothetical protein; 92.5 1.8 3.8E-05 31.4 8.8 52 102-153 7-58 (75)
59 PF05266 DUF724: Protein of un 92.3 6 0.00013 33.3 13.1 83 78-160 89-178 (190)
60 smart00338 BRLZ basic region l 92.3 0.74 1.6E-05 31.6 6.4 37 121-157 27-63 (65)
61 PRK02119 hypothetical protein; 92.2 1.8 4E-05 31.1 8.6 52 102-153 5-56 (73)
62 smart00340 HALZ homeobox assoc 92.0 0.36 7.7E-06 32.0 4.2 27 122-148 7-33 (44)
63 KOG1853 LIS1-interacting prote 91.9 3.7 8E-05 37.0 11.8 77 80-156 26-120 (333)
64 TIGR03752 conj_TIGR03752 integ 91.9 1.7 3.6E-05 41.6 10.3 61 100-160 74-135 (472)
65 TIGR00219 mreC rod shape-deter 91.8 0.48 1E-05 41.9 6.2 35 107-141 67-105 (283)
66 KOG0977 Nuclear envelope prote 91.8 2 4.3E-05 41.8 10.7 68 92-159 35-138 (546)
67 PF11932 DUF3450: Protein of u 91.7 6.3 0.00014 33.7 12.9 58 98-155 41-98 (251)
68 COG4467 Regulator of replicati 91.7 0.72 1.6E-05 36.2 6.3 47 99-145 8-54 (114)
69 PRK04325 hypothetical protein; 91.5 2 4.4E-05 30.9 8.2 46 101-153 11-56 (74)
70 KOG1414 Transcriptional activa 91.4 0.016 3.5E-07 53.3 -3.6 52 72-123 148-203 (395)
71 PRK11637 AmiB activator; Provi 91.3 5.8 0.00013 36.5 13.0 74 83-156 59-132 (428)
72 PRK02793 phi X174 lysis protei 91.3 2.3 4.9E-05 30.5 8.2 50 104-153 6-55 (72)
73 PF12329 TMF_DNA_bd: TATA elem 91.2 4.3 9.3E-05 29.2 9.7 61 97-157 10-70 (74)
74 PF10473 CENP-F_leu_zip: Leuci 91.0 7.2 0.00016 31.5 13.2 81 78-158 31-111 (140)
75 KOG0982 Centrosomal protein Nu 90.8 6.5 0.00014 37.6 12.8 62 99-160 297-358 (502)
76 PRK00295 hypothetical protein; 90.8 3 6.5E-05 29.6 8.3 47 100-153 6-52 (68)
77 PRK09039 hypothetical protein; 90.7 6.1 0.00013 35.9 12.4 47 107-153 138-184 (343)
78 KOG4343 bZIP transcription fac 90.7 1.3 2.8E-05 43.2 8.3 33 123-155 305-337 (655)
79 KOG3650 Predicted coiled-coil 90.6 1.9 4.2E-05 33.6 7.7 41 120-160 70-110 (120)
80 PF09755 DUF2046: Uncharacteri 90.6 2.1 4.5E-05 38.9 9.1 55 102-156 23-77 (310)
81 PRK00846 hypothetical protein; 90.3 3.2 6.9E-05 30.5 8.3 52 103-154 10-61 (77)
82 PF13747 DUF4164: Domain of un 90.3 6 0.00013 29.4 11.7 68 77-144 10-77 (89)
83 PF12325 TMF_TATA_bd: TATA ele 90.2 6 0.00013 31.1 10.4 16 133-148 95-110 (120)
84 PF07106 TBPIP: Tat binding pr 90.0 3.5 7.6E-05 33.2 9.3 52 97-148 84-137 (169)
85 PF04102 SlyX: SlyX; InterPro 90.0 2.7 5.8E-05 29.7 7.6 49 99-154 4-52 (69)
86 PF09744 Jnk-SapK_ap_N: JNK_SA 90.0 8 0.00017 31.8 11.4 59 101-159 91-149 (158)
87 KOG2391 Vacuolar sorting prote 89.9 16 0.00036 33.9 16.0 56 97-152 223-278 (365)
88 PF09728 Taxilin: Myosin-like 89.8 4.3 9.4E-05 36.4 10.5 65 99-163 244-308 (309)
89 KOG0977 Nuclear envelope prote 89.7 2.4 5.3E-05 41.2 9.4 62 90-151 132-193 (546)
90 KOG4571 Activating transcripti 89.6 3.8 8.2E-05 37.0 9.9 44 118-161 246-289 (294)
91 PF12718 Tropomyosin_1: Tropom 89.6 4.8 0.0001 32.3 9.6 50 101-150 16-65 (143)
92 PF08317 Spc7: Spc7 kinetochor 89.6 4.1 8.9E-05 36.4 10.2 60 99-158 209-268 (325)
93 PF12808 Mto2_bdg: Micro-tubul 89.3 1.2 2.6E-05 30.5 5.1 50 96-148 1-50 (52)
94 PF15294 Leu_zip: Leucine zipp 89.2 2.2 4.7E-05 38.3 8.0 48 104-151 130-177 (278)
95 PF10186 Atg14: UV radiation r 89.1 13 0.00028 31.5 14.2 26 97-122 82-107 (302)
96 PF14197 Cep57_CLD_2: Centroso 88.7 3.4 7.5E-05 29.5 7.4 40 106-145 26-65 (69)
97 PF04102 SlyX: SlyX; InterPro 88.7 3.3 7.1E-05 29.2 7.2 50 104-160 2-51 (69)
98 COG3883 Uncharacterized protei 88.5 7.1 0.00015 34.8 10.8 66 101-166 47-114 (265)
99 PF04156 IncA: IncA protein; 88.2 12 0.00027 30.2 13.2 61 96-156 127-187 (191)
100 PF05278 PEARLI-4: Arabidopsis 88.2 14 0.00031 33.0 12.4 56 98-153 206-261 (269)
101 PF04849 HAP1_N: HAP1 N-termin 88.1 7.9 0.00017 35.2 10.9 64 98-161 233-296 (306)
102 PRK00888 ftsB cell division pr 88.1 2 4.4E-05 32.8 6.2 25 99-123 34-58 (105)
103 COG1579 Zn-ribbon protein, pos 88.0 18 0.00038 31.8 13.2 50 80-129 33-82 (239)
104 PRK13922 rod shape-determining 88.0 3 6.4E-05 36.0 7.9 17 109-125 72-88 (276)
105 PF14662 CCDC155: Coiled-coil 87.9 6.8 0.00015 33.5 9.8 56 99-154 67-129 (193)
106 PF13851 GAS: Growth-arrest sp 87.7 16 0.00034 30.8 14.4 86 78-163 72-165 (201)
107 PF10186 Atg14: UV radiation r 87.6 16 0.00035 30.9 14.0 17 141-157 126-142 (302)
108 TIGR03752 conj_TIGR03752 integ 87.6 2 4.3E-05 41.1 7.1 58 102-159 83-141 (472)
109 PF07407 Seadorna_VP6: Seadorn 87.6 2.6 5.7E-05 39.0 7.6 33 106-140 32-64 (420)
110 KOG4797 Transcriptional regula 87.5 4.8 0.0001 31.8 8.0 24 118-141 72-95 (123)
111 PF08172 CASP_C: CASP C termin 87.5 4.3 9.4E-05 35.5 8.7 22 101-122 95-116 (248)
112 PRK00736 hypothetical protein; 87.3 7 0.00015 27.7 8.2 47 99-152 5-51 (68)
113 PF10174 Cast: RIM-binding pro 87.2 6.2 0.00013 39.9 10.7 69 94-162 296-364 (775)
114 PF01166 TSC22: TSC-22/dip/bun 86.6 1 2.2E-05 31.7 3.4 24 118-141 19-42 (59)
115 COG4942 Membrane-bound metallo 86.4 12 0.00026 35.5 11.4 69 78-146 38-106 (420)
116 KOG1962 B-cell receptor-associ 86.2 11 0.00025 32.6 10.4 47 104-150 163-209 (216)
117 PF15058 Speriolin_N: Sperioli 86.1 1.6 3.6E-05 37.3 5.1 34 101-142 7-40 (200)
118 TIGR02894 DNA_bind_RsfA transc 85.7 11 0.00023 31.5 9.6 36 119-154 103-138 (161)
119 PF12718 Tropomyosin_1: Tropom 85.4 12 0.00026 29.9 9.7 58 97-158 33-90 (143)
120 PF10211 Ax_dynein_light: Axon 85.3 21 0.00045 29.8 11.7 39 101-139 122-160 (189)
121 COG4026 Uncharacterized protei 85.3 7 0.00015 34.7 8.7 56 99-154 135-190 (290)
122 PF09726 Macoilin: Transmembra 85.2 13 0.00028 37.2 11.6 15 103-117 549-563 (697)
123 TIGR02169 SMC_prok_A chromosom 85.2 28 0.0006 35.0 14.0 35 123-157 451-485 (1164)
124 PF07888 CALCOCO1: Calcium bin 85.1 33 0.00071 33.6 14.0 19 134-152 199-217 (546)
125 KOG1318 Helix loop helix trans 85.1 35 0.00076 32.3 16.4 34 74-107 225-258 (411)
126 PF11365 DUF3166: Protein of u 85.1 2.9 6.3E-05 32.0 5.6 47 109-155 4-50 (96)
127 COG3074 Uncharacterized protei 85.1 13 0.00028 27.3 8.7 27 101-127 6-32 (79)
128 PHA02562 46 endonuclease subun 84.9 25 0.00054 32.8 12.9 30 103-132 362-391 (562)
129 PF14915 CCDC144C: CCDC144C pr 84.8 21 0.00046 32.5 11.8 75 87-161 181-255 (305)
130 PF15035 Rootletin: Ciliary ro 84.8 13 0.00028 31.1 9.9 46 105-150 73-118 (182)
131 PF04977 DivIC: Septum formati 84.8 6.3 0.00014 27.2 6.9 29 97-125 22-50 (80)
132 PRK00888 ftsB cell division pr 84.8 3.8 8.3E-05 31.3 6.2 40 117-156 31-70 (105)
133 PF10506 MCC-bdg_PDZ: PDZ doma 84.6 12 0.00027 26.7 8.7 56 103-158 2-57 (67)
134 PRK10803 tol-pal system protei 84.4 8.1 0.00018 33.7 8.9 47 99-145 54-100 (263)
135 PF07798 DUF1640: Protein of u 84.0 8.6 0.00019 31.4 8.4 21 130-150 76-96 (177)
136 TIGR02209 ftsL_broad cell divi 83.9 7.6 0.00016 27.5 7.2 34 115-148 26-59 (85)
137 PRK02119 hypothetical protein; 83.7 11 0.00024 27.1 7.8 48 99-146 9-56 (73)
138 PF04999 FtsL: Cell division p 83.5 7.8 0.00017 28.3 7.2 46 110-156 32-77 (97)
139 PF04111 APG6: Autophagy prote 83.4 29 0.00063 31.2 12.2 66 95-160 60-125 (314)
140 KOG0250 DNA repair protein RAD 83.0 24 0.00053 37.0 12.7 33 116-148 397-429 (1074)
141 PF08172 CASP_C: CASP C termin 83.0 7.8 0.00017 33.9 8.1 41 104-151 91-131 (248)
142 KOG4643 Uncharacterized coiled 82.9 18 0.00039 38.0 11.6 72 83-154 502-588 (1195)
143 PF10482 CtIP_N: Tumour-suppre 82.8 12 0.00026 29.7 8.3 62 89-150 4-65 (120)
144 PF03962 Mnd1: Mnd1 family; I 82.5 21 0.00045 29.8 10.2 16 129-144 112-127 (188)
145 PF04899 MbeD_MobD: MbeD/MobD 82.4 16 0.00034 26.3 9.9 55 104-158 12-66 (70)
146 KOG2077 JNK/SAPK-associated pr 82.3 6.2 0.00013 39.2 7.8 54 102-155 325-378 (832)
147 PF05266 DUF724: Protein of un 82.1 29 0.00064 29.2 12.5 57 102-158 127-183 (190)
148 PF12711 Kinesin-relat_1: Kine 82.1 11 0.00024 28.2 7.6 40 110-149 21-66 (86)
149 PF15035 Rootletin: Ciliary ro 81.9 19 0.00041 30.1 9.8 44 115-158 76-119 (182)
150 PF09738 DUF2051: Double stran 81.8 16 0.00034 33.1 9.8 85 72-159 86-172 (302)
151 PF04977 DivIC: Septum formati 81.8 6.3 0.00014 27.2 5.9 31 117-147 21-51 (80)
152 PF04728 LPP: Lipoprotein leuc 81.5 15 0.00033 25.5 8.8 47 101-154 5-51 (56)
153 PF15233 SYCE1: Synaptonemal c 81.4 24 0.00053 28.5 9.7 63 100-162 7-69 (134)
154 PRK09039 hypothetical protein; 81.4 27 0.00058 31.7 11.3 7 147-153 171-177 (343)
155 KOG1962 B-cell receptor-associ 81.4 6.8 0.00015 34.0 7.1 50 104-153 149-198 (216)
156 PF15397 DUF4618: Domain of un 81.4 28 0.00062 30.9 11.1 69 104-175 177-245 (258)
157 PRK02793 phi X174 lysis protei 81.3 14 0.00031 26.4 7.7 48 99-146 8-55 (72)
158 PRK10803 tol-pal system protei 81.2 19 0.0004 31.5 9.9 41 118-158 59-99 (263)
159 PF05700 BCAS2: Breast carcino 81.1 9.8 0.00021 32.3 8.0 40 121-160 176-215 (221)
160 PF05667 DUF812: Protein of un 81.1 19 0.00041 35.4 10.8 57 97-153 326-382 (594)
161 PF05812 Herpes_BLRF2: Herpesv 81.1 3.1 6.7E-05 33.0 4.5 28 97-124 1-28 (118)
162 PF13935 Ead_Ea22: Ead/Ea22-li 80.7 16 0.00035 28.9 8.6 23 131-153 116-138 (139)
163 PF07558 Shugoshin_N: Shugoshi 80.6 2.1 4.6E-05 28.3 2.9 31 111-141 12-42 (46)
164 KOG1414 Transcriptional activa 80.6 0.27 5.8E-06 45.3 -1.9 46 74-119 281-326 (395)
165 PF02403 Seryl_tRNA_N: Seryl-t 80.5 21 0.00045 26.4 10.8 75 85-159 9-92 (108)
166 KOG0161 Myosin class II heavy 80.5 38 0.00082 37.9 13.6 29 127-155 1512-1540(1930)
167 PF08826 DMPK_coil: DMPK coile 80.2 18 0.00038 25.4 7.9 40 107-153 19-58 (61)
168 PF00038 Filament: Intermediat 80.0 27 0.00058 30.3 10.5 44 108-151 211-254 (312)
169 PRK00295 hypothetical protein; 79.9 19 0.0004 25.5 8.0 51 104-161 3-53 (68)
170 PF04340 DUF484: Protein of un 79.8 10 0.00022 31.8 7.6 50 100-153 41-90 (225)
171 KOG0250 DNA repair protein RAD 79.7 25 0.00053 37.0 11.4 61 97-157 370-431 (1074)
172 PF07558 Shugoshin_N: Shugoshi 79.7 2.3 5E-05 28.1 2.9 38 113-150 7-44 (46)
173 COG4942 Membrane-bound metallo 79.6 57 0.0012 31.0 13.6 72 85-156 38-109 (420)
174 PF15070 GOLGA2L5: Putative go 79.5 55 0.0012 32.4 13.4 41 96-136 119-183 (617)
175 PF09738 DUF2051: Double stran 79.3 17 0.00036 32.9 9.1 54 107-160 113-166 (302)
176 PF12777 MT: Microtubule-bindi 79.1 21 0.00046 32.1 9.8 54 104-157 233-286 (344)
177 PF10146 zf-C4H2: Zinc finger- 78.9 15 0.00033 31.9 8.5 44 106-149 60-103 (230)
178 PF12709 Kinetocho_Slk19: Cent 78.8 13 0.00028 28.0 7.0 20 104-123 47-66 (87)
179 KOG1103 Predicted coiled-coil 78.8 33 0.00073 32.4 11.1 61 96-156 129-189 (561)
180 PF11180 DUF2968: Protein of u 78.7 41 0.00089 28.8 13.2 81 82-169 109-189 (192)
181 KOG0804 Cytoplasmic Zn-finger 78.7 39 0.00086 32.5 11.7 77 82-158 368-452 (493)
182 PRK13729 conjugal transfer pil 78.6 12 0.00027 35.9 8.5 59 97-155 67-125 (475)
183 COG2433 Uncharacterized conser 78.2 10 0.00022 37.6 7.9 29 99-127 436-464 (652)
184 PRK04325 hypothetical protein; 78.2 22 0.00048 25.5 7.9 53 101-160 4-56 (74)
185 PF04136 Sec34: Sec34-like fam 78.2 27 0.00058 28.3 9.3 59 99-157 21-79 (157)
186 PF10226 DUF2216: Uncharacteri 78.1 43 0.00094 28.7 11.1 55 78-132 23-81 (195)
187 PF05103 DivIVA: DivIVA protei 77.9 1.3 2.9E-05 33.5 1.6 43 99-141 25-67 (131)
188 KOG0995 Centromere-associated 77.9 24 0.00052 34.7 10.2 47 104-150 278-324 (581)
189 PF09789 DUF2353: Uncharacteri 77.7 27 0.00059 31.9 10.1 40 105-144 71-110 (319)
190 PF01166 TSC22: TSC-22/dip/bun 77.7 3.8 8.2E-05 28.8 3.6 28 121-148 15-42 (59)
191 PF07058 Myosin_HC-like: Myosi 77.7 10 0.00022 34.9 7.2 51 108-158 2-52 (351)
192 PF08647 BRE1: BRE1 E3 ubiquit 77.4 27 0.00059 26.0 11.9 75 81-155 6-80 (96)
193 PF14988 DUF4515: Domain of un 77.3 41 0.00088 28.6 10.5 42 107-148 157-198 (206)
194 PHA03162 hypothetical protein; 77.3 1.8 3.9E-05 35.0 2.2 27 96-122 10-36 (135)
195 PRK04406 hypothetical protein; 77.3 24 0.00051 25.5 7.8 40 100-139 12-51 (75)
196 PF04849 HAP1_N: HAP1 N-termin 77.1 30 0.00064 31.5 10.1 29 115-143 236-264 (306)
197 PF07716 bZIP_2: Basic region 76.9 11 0.00024 25.0 5.7 28 121-148 26-53 (54)
198 KOG1853 LIS1-interacting prote 76.4 40 0.00087 30.5 10.5 28 136-163 159-186 (333)
199 PF05837 CENP-H: Centromere pr 76.3 15 0.00033 27.9 6.9 56 99-155 17-72 (106)
200 KOG4001 Axonemal dynein light 76.3 34 0.00075 30.0 9.8 53 87-139 169-225 (259)
201 PRK13922 rod shape-determining 76.2 37 0.00081 29.2 10.2 27 97-123 67-93 (276)
202 PF10211 Ax_dynein_light: Axon 76.2 44 0.00096 27.8 10.4 58 98-155 126-184 (189)
203 PRK00736 hypothetical protein; 75.9 25 0.00054 24.8 7.9 50 104-160 3-52 (68)
204 PF13942 Lipoprotein_20: YfhG 75.8 22 0.00049 30.0 8.3 37 123-159 126-162 (179)
205 PF00769 ERM: Ezrin/radixin/mo 75.7 53 0.0011 28.5 12.4 59 101-159 63-121 (246)
206 PRK14127 cell division protein 75.6 10 0.00022 29.5 5.9 27 129-155 39-65 (109)
207 PRK04863 mukB cell division pr 75.6 76 0.0016 34.6 14.1 18 80-97 323-340 (1486)
208 PF01486 K-box: K-box region; 75.2 13 0.00029 27.5 6.3 46 99-144 49-99 (100)
209 smart00787 Spc7 Spc7 kinetocho 75.1 37 0.0008 30.6 10.2 58 100-157 205-262 (312)
210 KOG4360 Uncharacterized coiled 74.9 25 0.00054 34.5 9.4 49 103-151 202-250 (596)
211 KOG4196 bZIP transcription fac 74.8 44 0.00095 27.1 9.8 60 98-158 46-105 (135)
212 PF10146 zf-C4H2: Zinc finger- 74.8 56 0.0012 28.3 11.0 39 96-134 29-67 (230)
213 PF04642 DUF601: Protein of un 74.7 3.6 7.7E-05 36.9 3.5 57 99-155 217-273 (311)
214 PF11180 DUF2968: Protein of u 74.7 54 0.0012 28.1 11.2 63 100-162 113-175 (192)
215 PF09789 DUF2353: Uncharacteri 74.7 10 0.00022 34.7 6.5 30 90-119 21-50 (319)
216 PF06632 XRCC4: DNA double-str 74.4 33 0.00072 31.5 9.8 38 102-139 140-177 (342)
217 KOG0288 WD40 repeat protein Ti 74.4 75 0.0016 30.4 12.2 27 98-124 47-73 (459)
218 COG2900 SlyX Uncharacterized p 74.3 31 0.00068 25.2 8.2 47 100-153 9-55 (72)
219 PRK10963 hypothetical protein; 74.1 14 0.00031 31.3 7.0 42 105-150 43-84 (223)
220 PRK10636 putative ABC transpor 73.8 37 0.00079 33.0 10.5 63 98-160 562-631 (638)
221 KOG3650 Predicted coiled-coil 73.5 21 0.00046 27.9 7.1 39 110-148 67-105 (120)
222 PF09730 BicD: Microtubule-ass 73.4 25 0.00054 35.4 9.4 48 101-148 71-118 (717)
223 PF06818 Fez1: Fez1; InterPro 73.3 20 0.00044 30.8 7.7 60 95-154 76-158 (202)
224 PF07889 DUF1664: Protein of u 73.2 45 0.00098 26.5 9.6 50 99-148 68-117 (126)
225 PF12329 TMF_DNA_bd: TATA elem 73.1 31 0.00068 24.7 10.1 60 101-160 7-66 (74)
226 PHA03011 hypothetical protein; 73.0 33 0.00071 26.9 8.0 55 98-152 63-117 (120)
227 KOG4674 Uncharacterized conser 72.9 29 0.00063 38.4 10.2 69 90-158 1234-1302(1822)
228 PRK02224 chromosome segregatio 72.9 72 0.0016 31.8 12.5 40 137-176 415-462 (880)
229 PF07407 Seadorna_VP6: Seadorn 72.2 5.3 0.00012 37.1 4.1 31 100-130 33-63 (420)
230 KOG0161 Myosin class II heavy 72.2 87 0.0019 35.2 13.6 49 109-157 953-1001(1930)
231 PF05667 DUF812: Protein of un 72.1 27 0.00058 34.3 9.1 47 98-144 334-380 (594)
232 PF10205 KLRAQ: Predicted coil 72.0 44 0.00095 25.9 10.1 58 102-159 15-72 (102)
233 TIGR00606 rad50 rad50. This fa 71.7 92 0.002 33.1 13.4 73 85-157 843-918 (1311)
234 PRK10722 hypothetical protein; 71.7 17 0.00037 32.2 7.0 34 126-159 175-208 (247)
235 PF13815 Dzip-like_N: Iguana/D 71.6 20 0.00043 27.5 6.7 39 110-148 77-115 (118)
236 PF06428 Sec2p: GDP/GTP exchan 71.6 12 0.00026 28.6 5.3 18 128-145 45-62 (100)
237 PF05377 FlaC_arch: Flagella a 71.6 20 0.00043 24.9 5.9 28 102-129 10-37 (55)
238 PF02403 Seryl_tRNA_N: Seryl-t 71.5 38 0.00083 25.0 8.8 56 105-160 42-100 (108)
239 KOG1029 Endocytic adaptor prot 71.5 1E+02 0.0022 32.1 13.0 23 135-157 431-453 (1118)
240 PHA03155 hypothetical protein; 71.3 5.9 0.00013 31.3 3.6 26 99-124 8-33 (115)
241 KOG0243 Kinesin-like protein [ 71.2 59 0.0013 34.2 11.6 59 101-159 443-501 (1041)
242 PF13805 Pil1: Eisosome compon 71.2 23 0.0005 31.7 7.8 64 82-149 131-194 (271)
243 PF06810 Phage_GP20: Phage min 71.2 54 0.0012 26.6 9.5 15 99-113 34-48 (155)
244 PF07200 Mod_r: Modifier of ru 71.1 48 0.001 25.9 9.1 49 83-132 40-88 (150)
245 PF10473 CENP-F_leu_zip: Leuci 71.0 54 0.0012 26.5 12.9 29 125-153 71-99 (140)
246 PF00038 Filament: Intermediat 70.9 69 0.0015 27.7 13.3 27 100-126 224-250 (312)
247 PF09730 BicD: Microtubule-ass 70.7 64 0.0014 32.7 11.5 49 107-155 98-149 (717)
248 KOG0980 Actin-binding protein 70.7 73 0.0016 33.2 11.9 27 89-115 456-482 (980)
249 KOG1319 bHLHZip transcription 70.7 71 0.0015 27.7 10.7 70 79-148 59-140 (229)
250 COG4372 Uncharacterized protei 70.6 1E+02 0.0022 29.5 12.8 31 113-143 144-174 (499)
251 KOG3433 Protein involved in me 70.6 65 0.0014 27.7 9.9 46 87-132 104-149 (203)
252 PF05837 CENP-H: Centromere pr 70.5 45 0.00096 25.3 9.1 17 144-160 68-84 (106)
253 PRK05431 seryl-tRNA synthetase 70.2 94 0.002 29.0 12.2 33 131-163 70-102 (425)
254 KOG0946 ER-Golgi vesicle-tethe 70.2 59 0.0013 33.6 11.1 56 90-145 662-717 (970)
255 PF03980 Nnf1: Nnf1 ; InterPr 70.1 8.7 0.00019 28.8 4.3 29 97-125 78-106 (109)
256 COG1579 Zn-ribbon protein, pos 70.0 77 0.0017 27.9 11.8 29 101-129 91-119 (239)
257 PF03961 DUF342: Protein of un 69.9 47 0.001 30.9 9.9 27 133-159 381-407 (451)
258 PF04871 Uso1_p115_C: Uso1 / p 69.6 55 0.0012 26.0 9.5 55 104-158 39-94 (136)
259 PF13815 Dzip-like_N: Iguana/D 69.2 49 0.0011 25.3 8.5 35 118-152 78-112 (118)
260 PF05529 Bap31: B-cell recepto 69.2 57 0.0012 26.6 9.3 33 114-146 155-187 (192)
261 KOG0288 WD40 repeat protein Ti 69.0 83 0.0018 30.1 11.2 42 103-144 31-72 (459)
262 TIGR02209 ftsL_broad cell divi 68.8 24 0.00052 24.9 6.2 31 96-126 28-58 (85)
263 PRK14872 rod shape-determining 68.7 11 0.00023 34.7 5.3 16 110-125 61-76 (337)
264 COG1196 Smc Chromosome segrega 68.4 1.5E+02 0.0032 31.2 13.9 29 125-153 735-763 (1163)
265 PF10481 CENP-F_N: Cenp-F N-te 68.2 88 0.0019 28.5 10.7 80 79-158 19-105 (307)
266 PRK05431 seryl-tRNA synthetase 68.2 90 0.002 29.1 11.4 65 99-163 28-95 (425)
267 KOG0804 Cytoplasmic Zn-finger 68.2 43 0.00093 32.3 9.2 45 112-156 381-425 (493)
268 PF05335 DUF745: Protein of un 68.1 73 0.0016 26.9 10.9 65 95-159 63-127 (188)
269 PF12709 Kinetocho_Slk19: Cent 68.0 50 0.0011 24.9 8.4 41 103-143 31-72 (87)
270 PF11544 Spc42p: Spindle pole 67.8 47 0.001 24.5 9.5 48 102-149 8-55 (76)
271 PF14645 Chibby: Chibby family 67.6 30 0.00064 27.0 6.9 38 102-139 74-111 (116)
272 PF07200 Mod_r: Modifier of ru 67.1 58 0.0013 25.4 9.3 21 102-122 30-50 (150)
273 KOG2129 Uncharacterized conser 66.8 16 0.00035 35.1 6.1 50 102-151 46-95 (552)
274 PF10168 Nup88: Nuclear pore c 66.7 95 0.0021 31.2 11.8 29 99-127 579-607 (717)
275 PF07412 Geminin: Geminin; In 66.7 30 0.00064 29.8 7.2 43 113-159 125-167 (200)
276 PF02388 FemAB: FemAB family; 66.6 47 0.001 30.5 9.1 57 99-159 242-298 (406)
277 PF10828 DUF2570: Protein of u 66.5 55 0.0012 24.8 9.3 48 101-148 34-81 (110)
278 PF06216 RTBV_P46: Rice tungro 66.4 54 0.0012 29.8 9.1 46 84-132 66-111 (389)
279 PF11500 Cut12: Spindle pole b 66.4 66 0.0014 26.5 9.0 54 77-130 83-136 (152)
280 COG1792 MreC Cell shape-determ 66.3 23 0.00049 31.4 6.7 14 128-141 91-104 (284)
281 KOG3335 Predicted coiled-coil 66.2 15 0.00032 31.2 5.2 38 78-121 91-128 (181)
282 PRK00846 hypothetical protein; 65.8 51 0.0011 24.2 7.8 40 101-140 15-54 (77)
283 PF09486 HrpB7: Bacterial type 65.3 77 0.0017 26.1 9.7 56 99-154 79-134 (158)
284 KOG3156 Uncharacterized membra 65.1 50 0.0011 28.8 8.3 36 116-151 104-140 (220)
285 PF00261 Tropomyosin: Tropomyo 64.9 88 0.0019 26.6 13.8 68 91-158 161-228 (237)
286 PRK11147 ABC transporter ATPas 64.8 45 0.00098 32.2 9.0 55 101-155 570-630 (635)
287 KOG1103 Predicted coiled-coil 64.7 39 0.00085 32.0 8.1 65 88-152 227-291 (561)
288 COG2433 Uncharacterized conser 64.6 1.6E+02 0.0035 29.5 12.8 33 100-132 430-462 (652)
289 PF08961 DUF1875: Domain of un 64.5 2.2 4.7E-05 37.4 0.0 42 98-139 121-162 (243)
290 PF10212 TTKRSYEDQ: Predicted 64.4 69 0.0015 31.3 10.0 21 133-153 454-474 (518)
291 PF05557 MAD: Mitotic checkpoi 64.3 49 0.0011 32.7 9.3 31 100-130 504-534 (722)
292 KOG0946 ER-Golgi vesicle-tethe 64.3 74 0.0016 33.0 10.5 59 95-153 660-718 (970)
293 PF00769 ERM: Ezrin/radixin/mo 64.2 97 0.0021 26.9 11.9 49 104-152 73-121 (246)
294 PF14817 HAUS5: HAUS augmin-li 64.1 69 0.0015 31.9 10.2 62 93-154 73-134 (632)
295 KOG0957 PHD finger protein [Ge 64.0 41 0.00088 33.2 8.3 61 100-160 439-499 (707)
296 PTZ00454 26S protease regulato 63.9 35 0.00077 31.5 7.8 17 105-121 28-44 (398)
297 PF10805 DUF2730: Protein of u 63.9 62 0.0013 24.5 9.7 32 98-129 48-81 (106)
298 PF09763 Sec3_C: Exocyst compl 63.9 34 0.00073 33.6 8.0 66 99-164 37-102 (701)
299 KOG2264 Exostosin EXT1L [Signa 63.7 69 0.0015 32.2 9.9 58 98-155 92-149 (907)
300 PF12777 MT: Microtubule-bindi 63.5 43 0.00092 30.1 8.1 73 82-154 225-311 (344)
301 KOG4370 Ral-GTPase effector RL 63.5 29 0.00064 33.3 7.2 49 116-164 409-457 (514)
302 PF12711 Kinesin-relat_1: Kine 63.4 31 0.00066 25.9 6.0 41 107-149 45-85 (86)
303 PF06419 COG6: Conserved oligo 63.4 56 0.0012 32.0 9.4 66 98-163 44-109 (618)
304 PF08826 DMPK_coil: DMPK coile 63.4 49 0.0011 23.2 7.7 33 100-132 26-58 (61)
305 KOG0249 LAR-interacting protei 63.3 91 0.002 32.0 10.8 37 118-154 221-257 (916)
306 PRK13182 racA polar chromosome 63.3 67 0.0015 26.7 8.6 22 140-161 124-145 (175)
307 cd07429 Cby_like Chibby, a nuc 62.9 25 0.00055 27.4 5.7 24 104-127 77-100 (108)
308 TIGR00219 mreC rod shape-deter 62.8 34 0.00073 30.2 7.2 42 116-160 69-110 (283)
309 KOG4643 Uncharacterized coiled 62.7 1.7E+02 0.0037 31.1 12.8 76 78-153 373-448 (1195)
310 PF15290 Syntaphilin: Golgi-lo 62.6 1.1E+02 0.0023 28.0 10.2 27 125-151 106-134 (305)
311 TIGR02132 phaR_Bmeg polyhydrox 62.6 60 0.0013 27.7 8.2 60 99-158 79-138 (189)
312 TIGR02231 conserved hypothetic 61.9 1.4E+02 0.0031 28.1 12.0 44 117-160 128-171 (525)
313 COG4372 Uncharacterized protei 61.7 1.5E+02 0.0034 28.4 12.4 70 86-155 131-200 (499)
314 KOG0933 Structural maintenance 61.6 2E+02 0.0044 30.7 13.1 36 104-139 820-855 (1174)
315 KOG0995 Centromere-associated 61.2 36 0.00077 33.6 7.5 46 98-143 279-324 (581)
316 PF07889 DUF1664: Protein of u 61.2 82 0.0018 25.1 10.7 51 110-160 58-108 (126)
317 KOG4797 Transcriptional regula 61.2 21 0.00045 28.3 4.9 30 119-148 66-95 (123)
318 PF09727 CortBP2: Cortactin-bi 61.1 1.1E+02 0.0023 26.2 11.8 50 108-157 136-185 (192)
319 PF09304 Cortex-I_coil: Cortex 61.0 78 0.0017 24.7 14.2 69 90-158 7-75 (107)
320 cd07596 BAR_SNX The Bin/Amphip 60.7 84 0.0018 25.0 12.6 74 82-158 114-195 (218)
321 PF04728 LPP: Lipoprotein leuc 60.7 54 0.0012 22.8 8.6 23 102-124 13-35 (56)
322 PF12808 Mto2_bdg: Micro-tubul 60.7 15 0.00033 25.1 3.6 31 97-127 20-50 (52)
323 PF09755 DUF2046: Uncharacteri 60.5 1.2E+02 0.0026 27.8 10.3 28 130-157 264-291 (310)
324 PF05529 Bap31: B-cell recepto 60.4 69 0.0015 26.1 8.2 16 137-152 157-172 (192)
325 PF10498 IFT57: Intra-flagella 59.8 1.4E+02 0.0031 27.5 10.9 55 106-160 266-320 (359)
326 PTZ00454 26S protease regulato 59.7 49 0.0011 30.6 7.9 10 112-121 28-37 (398)
327 KOG1265 Phospholipase C [Lipid 59.6 2.3E+02 0.0051 30.0 13.0 46 76-121 1026-1071(1189)
328 PF12999 PRKCSH-like: Glucosid 59.2 92 0.002 26.2 8.8 29 95-123 142-170 (176)
329 PF09728 Taxilin: Myosin-like 59.2 1.4E+02 0.0029 26.9 12.6 28 133-160 127-154 (309)
330 KOG4807 F-actin binding protei 59.1 1.3E+02 0.0027 29.1 10.5 21 132-152 461-481 (593)
331 COG4985 ABC-type phosphate tra 59.0 1.2E+02 0.0026 27.2 9.8 63 100-162 187-249 (289)
332 PF14916 CCDC92: Coiled-coil d 58.7 16 0.00034 25.7 3.5 34 139-172 26-59 (60)
333 KOG2189 Vacuolar H+-ATPase V0 58.5 1.3E+02 0.0027 31.1 10.9 64 97-160 54-132 (829)
334 KOG4360 Uncharacterized coiled 58.4 1E+02 0.0022 30.4 9.9 62 99-160 219-294 (596)
335 KOG0982 Centrosomal protein Nu 58.4 1.8E+02 0.0039 28.1 12.2 46 94-148 280-325 (502)
336 PF01486 K-box: K-box region; 58.3 31 0.00067 25.5 5.3 23 100-122 76-98 (100)
337 PF15619 Lebercilin: Ciliary p 58.3 1.1E+02 0.0024 25.7 9.3 20 132-151 169-188 (194)
338 PF03980 Nnf1: Nnf1 ; InterPr 58.2 26 0.00057 26.2 4.9 31 118-148 78-108 (109)
339 TIGR02231 conserved hypothetic 58.2 1.7E+02 0.0036 27.7 13.2 46 109-154 127-172 (525)
340 PRK13182 racA polar chromosome 58.1 1.1E+02 0.0024 25.5 9.1 60 99-160 92-151 (175)
341 PF07334 IFP_35_N: Interferon- 58.1 22 0.00048 26.1 4.3 26 130-155 3-28 (76)
342 KOG3088 Secretory carrier memb 57.9 1.5E+02 0.0033 27.1 10.4 21 2-22 1-21 (313)
343 TIGR00414 serS seryl-tRNA synt 57.8 1.1E+02 0.0024 28.5 9.9 65 99-163 37-105 (418)
344 PRK03992 proteasome-activating 57.6 51 0.0011 30.0 7.6 6 144-149 39-44 (389)
345 PF04880 NUDE_C: NUDE protein, 57.5 22 0.00047 29.6 4.7 12 111-122 29-40 (166)
346 KOG0243 Kinesin-like protein [ 57.5 2.6E+02 0.0057 29.7 13.5 63 97-159 446-522 (1041)
347 PF10226 DUF2216: Uncharacteri 57.5 1.1E+02 0.0024 26.2 9.0 23 119-141 54-76 (195)
348 TIGR00606 rad50 rad50. This fa 57.3 1.6E+02 0.0034 31.4 12.0 61 97-157 1026-1091(1311)
349 PRK03992 proteasome-activating 57.3 43 0.00092 30.6 7.0 33 104-136 13-45 (389)
350 PF10883 DUF2681: Protein of u 56.8 48 0.001 24.9 6.0 38 108-150 32-69 (87)
351 PF06210 DUF1003: Protein of u 56.8 89 0.0019 24.1 8.0 49 83-136 55-103 (108)
352 PF12795 MscS_porin: Mechanose 56.7 98 0.0021 26.2 8.8 54 104-157 83-136 (240)
353 PF13870 DUF4201: Domain of un 56.5 1E+02 0.0023 24.8 10.7 30 128-157 85-114 (177)
354 PF00435 Spectrin: Spectrin re 56.5 60 0.0013 22.0 10.3 25 136-160 75-99 (105)
355 PF15397 DUF4618: Domain of un 56.5 1.5E+02 0.0032 26.5 11.1 45 82-126 64-108 (258)
356 COG3879 Uncharacterized protei 56.3 61 0.0013 28.7 7.5 18 105-122 63-80 (247)
357 KOG0933 Structural maintenance 56.1 2.4E+02 0.0052 30.1 12.6 40 113-152 822-861 (1174)
358 PRK13923 putative spore coat p 55.5 1.2E+02 0.0027 25.3 9.8 41 119-159 110-150 (170)
359 PF13874 Nup54: Nucleoporin co 55.1 51 0.0011 26.0 6.4 60 98-157 64-123 (141)
360 KOG0837 Transcriptional activa 55.0 1E+02 0.0022 27.8 8.7 41 118-158 225-265 (279)
361 PF05384 DegS: Sensor protein 55.0 1.2E+02 0.0026 25.0 12.0 75 84-158 19-122 (159)
362 KOG1029 Endocytic adaptor prot 55.0 1.6E+02 0.0035 30.7 11.0 23 132-154 435-457 (1118)
363 PF05911 DUF869: Plant protein 54.9 1.2E+02 0.0026 30.9 10.3 52 99-150 92-164 (769)
364 KOG2751 Beclin-like protein [S 54.9 1.4E+02 0.003 28.7 10.0 67 89-155 154-225 (447)
365 cd07429 Cby_like Chibby, a nuc 54.8 32 0.00069 26.8 5.0 19 130-148 82-100 (108)
366 PF03670 UPF0184: Uncharacteri 54.5 89 0.0019 23.4 7.5 37 100-143 34-70 (83)
367 KOG0999 Microtubule-associated 54.4 72 0.0016 31.9 8.3 33 113-145 156-188 (772)
368 KOG0249 LAR-interacting protei 54.2 2.5E+02 0.0055 29.0 12.1 52 106-157 216-267 (916)
369 COG1340 Uncharacterized archae 53.7 1.7E+02 0.0038 26.5 13.8 69 83-151 31-100 (294)
370 PF04375 HemX: HemX; InterPro 53.7 1.1E+02 0.0024 27.9 9.1 11 102-112 63-73 (372)
371 PRK14160 heat shock protein Gr 53.6 1.2E+02 0.0026 26.2 8.7 39 101-139 56-94 (211)
372 KOG0709 CREB/ATF family transc 53.5 33 0.00072 33.0 5.8 27 122-148 274-300 (472)
373 PF04899 MbeD_MobD: MbeD/MobD 53.4 82 0.0018 22.6 7.7 45 109-153 24-68 (70)
374 KOG0483 Transcription factor H 53.2 29 0.00062 29.6 4.9 47 113-159 105-151 (198)
375 PRK10929 putative mechanosensi 53.1 1.5E+02 0.0033 31.5 10.9 53 108-160 260-312 (1109)
376 TIGR01010 BexC_CtrB_KpsE polys 53.0 1.3E+02 0.0027 26.9 9.2 16 104-119 175-190 (362)
377 KOG0239 Kinesin (KAR3 subfamil 53.0 2.2E+02 0.0047 28.6 11.6 10 104-113 246-255 (670)
378 PF08961 DUF1875: Domain of un 52.7 4.6 9.9E-05 35.4 0.0 46 101-146 117-162 (243)
379 PF10174 Cast: RIM-binding pro 52.7 1.6E+02 0.0035 30.1 10.7 46 97-142 306-351 (775)
380 PRK10920 putative uroporphyrin 52.6 1.9E+02 0.004 27.2 10.5 21 129-149 101-121 (390)
381 PF04599 Pox_G5: Poxvirus G5 p 52.5 1.8E+02 0.0039 27.8 10.4 93 73-171 77-189 (425)
382 KOG0976 Rho/Rac1-interacting s 52.4 1.1E+02 0.0023 32.2 9.3 56 101-156 353-408 (1265)
383 PHA02562 46 endonuclease subun 52.2 2E+02 0.0044 26.8 13.5 56 98-153 336-391 (562)
384 PF10359 Fmp27_WPPW: RNA pol I 52.1 92 0.002 29.5 8.5 60 100-164 171-230 (475)
385 PF14257 DUF4349: Domain of un 51.5 1.3E+02 0.0029 25.6 8.8 62 99-160 132-195 (262)
386 PF15070 GOLGA2L5: Putative go 51.4 2.2E+02 0.0047 28.3 11.2 13 100-112 51-63 (617)
387 KOG0976 Rho/Rac1-interacting s 51.4 1.9E+02 0.0041 30.4 10.9 30 101-130 108-137 (1265)
388 PF05622 HOOK: HOOK protein; 51.4 5 0.00011 39.5 0.0 35 95-129 321-355 (713)
389 PF15369 KIAA1328: Uncharacter 51.4 2E+02 0.0044 26.6 10.8 41 87-127 15-61 (328)
390 PF04859 DUF641: Plant protein 51.3 65 0.0014 25.8 6.4 37 103-139 91-127 (131)
391 KOG4673 Transcription factor T 51.3 87 0.0019 32.1 8.4 39 101-139 720-758 (961)
392 PF03962 Mnd1: Mnd1 family; I 51.2 1.4E+02 0.0031 24.8 9.7 25 101-125 71-95 (188)
393 PF07926 TPR_MLP1_2: TPR/MLP1/ 51.1 1.1E+02 0.0025 23.6 10.4 24 133-156 97-120 (132)
394 PF05278 PEARLI-4: Arabidopsis 51.0 1.9E+02 0.004 26.0 13.1 21 133-153 220-240 (269)
395 COG3167 PilO Tfp pilus assembl 50.9 76 0.0017 27.5 7.0 55 99-157 42-96 (211)
396 PF08232 Striatin: Striatin fa 50.8 1.2E+02 0.0027 23.9 9.4 27 132-158 37-63 (134)
397 PRK12705 hypothetical protein; 50.8 2.4E+02 0.0053 27.3 13.0 34 118-151 86-119 (508)
398 KOG4674 Uncharacterized conser 50.7 2.4E+02 0.0052 31.8 12.1 69 93-161 655-723 (1822)
399 smart00340 HALZ homeobox assoc 50.7 43 0.00093 22.3 4.3 26 101-126 7-32 (44)
400 KOG2991 Splicing regulator [RN 50.7 1.2E+02 0.0026 27.6 8.5 54 101-154 238-291 (330)
401 KOG2129 Uncharacterized conser 50.5 1.6E+02 0.0034 28.6 9.7 35 102-136 281-315 (552)
402 PLN02678 seryl-tRNA synthetase 50.5 1.5E+02 0.0033 28.2 9.7 29 132-160 76-104 (448)
403 KOG2010 Double stranded RNA bi 50.2 1.3E+02 0.0027 28.3 8.8 42 99-140 154-195 (405)
404 PF14775 NYD-SP28_assoc: Sperm 50.2 83 0.0018 21.8 7.5 32 108-140 22-53 (60)
405 COG4420 Predicted membrane pro 50.1 1.1E+02 0.0024 26.2 7.9 45 114-158 135-179 (191)
406 PF06103 DUF948: Bacterial pro 50.0 93 0.002 22.3 9.0 58 98-155 32-89 (90)
407 PF13094 CENP-Q: CENP-Q, a CEN 49.9 1.3E+02 0.0028 23.9 9.6 39 99-137 41-79 (160)
408 PF10883 DUF2681: Protein of u 49.8 62 0.0013 24.3 5.7 24 129-152 32-55 (87)
409 PF07111 HCR: Alpha helical co 49.8 3E+02 0.0066 28.1 13.2 76 79-154 481-569 (739)
410 PF02344 Myc-LZ: Myc leucine z 49.8 47 0.001 20.7 4.1 24 131-154 5-28 (32)
411 PF11365 DUF3166: Protein of u 49.7 1.2E+02 0.0025 23.3 8.7 31 99-129 15-45 (96)
412 PF06698 DUF1192: Protein of u 49.6 71 0.0015 22.3 5.6 24 101-124 23-46 (59)
413 PRK11546 zraP zinc resistance 49.6 1.2E+02 0.0026 24.7 7.7 19 128-146 90-108 (143)
414 KOG0483 Transcription factor H 49.5 32 0.0007 29.3 4.6 44 109-152 108-151 (198)
415 PF06548 Kinesin-related: Kine 49.3 1.7E+02 0.0037 28.4 9.7 54 98-151 384-472 (488)
416 PF05600 DUF773: Protein of un 48.9 1.8E+02 0.0039 28.1 10.0 64 98-161 431-494 (507)
417 PF11544 Spc42p: Spindle pole 48.8 88 0.0019 23.1 6.2 15 113-127 5-19 (76)
418 PHA03065 Hypothetical protein; 48.8 2.1E+02 0.0046 27.4 10.2 93 73-171 79-191 (438)
419 PRK14872 rod shape-determining 48.8 62 0.0013 29.8 6.6 24 100-123 58-81 (337)
420 KOG0971 Microtubule-associated 48.8 1.3E+02 0.0028 31.8 9.4 65 99-163 375-439 (1243)
421 KOG3564 GTPase-activating prot 48.7 2.8E+02 0.0061 27.4 11.4 67 93-159 40-109 (604)
422 COG1792 MreC Cell shape-determ 48.0 64 0.0014 28.6 6.4 37 109-149 69-105 (284)
423 PF14282 FlxA: FlxA-like prote 48.0 1.2E+02 0.0026 22.9 7.3 51 113-163 19-73 (106)
424 PF04568 IATP: Mitochondrial A 47.9 1.2E+02 0.0027 23.1 7.5 44 83-126 53-96 (100)
425 KOG4673 Transcription factor T 47.9 3.4E+02 0.0073 28.1 12.6 33 95-127 533-565 (961)
426 PF07334 IFP_35_N: Interferon- 47.5 44 0.00095 24.6 4.4 21 109-129 3-23 (76)
427 PRK04778 septation ring format 47.4 2.6E+02 0.0057 26.9 11.0 62 100-161 377-438 (569)
428 TIGR01000 bacteriocin_acc bact 47.0 2.4E+02 0.0052 26.1 10.4 67 97-163 234-313 (457)
429 PF11382 DUF3186: Protein of u 47.0 58 0.0012 29.1 6.1 27 100-126 33-59 (308)
430 KOG4807 F-actin binding protei 46.9 2E+02 0.0042 27.9 9.7 52 96-147 390-455 (593)
431 KOG1937 Uncharacterized conser 46.8 2.3E+02 0.005 27.6 10.2 68 74-143 408-518 (521)
432 KOG0239 Kinesin (KAR3 subfamil 46.7 3.2E+02 0.0069 27.5 12.1 44 109-152 244-287 (670)
433 PRK09413 IS2 repressor TnpA; R 46.7 56 0.0012 24.9 5.2 7 134-140 92-98 (121)
434 PF07047 OPA3: Optic atrophy 3 46.7 50 0.0011 26.0 5.0 38 76-119 95-132 (134)
435 COG1730 GIM5 Predicted prefold 46.6 1.3E+02 0.0028 24.5 7.5 17 99-115 115-131 (145)
436 PF07851 TMPIT: TMPIT-like pro 46.5 1.8E+02 0.0038 26.8 9.2 8 147-154 74-81 (330)
437 KOG1691 emp24/gp25L/p24 family 46.3 1.8E+02 0.004 25.2 8.7 51 97-147 132-182 (210)
438 COG1340 Uncharacterized archae 46.0 2.3E+02 0.0051 25.7 12.6 52 106-157 41-92 (294)
439 TIGR03007 pepcterm_ChnLen poly 45.9 2.2E+02 0.0049 26.3 10.0 19 137-155 214-232 (498)
440 PF05701 WEMBL: Weak chloropla 45.5 2.7E+02 0.0058 26.7 10.6 10 139-148 342-351 (522)
441 KOG0994 Extracellular matrix g 45.4 2.1E+02 0.0046 31.3 10.4 75 80-162 1678-1752(1758)
442 PF11853 DUF3373: Protein of u 45.3 19 0.00042 34.7 2.9 25 100-124 32-56 (489)
443 COG3159 Uncharacterized protei 45.3 92 0.002 27.2 6.8 41 107-151 46-86 (218)
444 KOG3091 Nuclear pore complex, 45.2 2.1E+02 0.0045 28.0 9.7 36 115-150 357-392 (508)
445 PF08232 Striatin: Striatin fa 45.2 1.5E+02 0.0033 23.4 8.3 44 82-125 15-58 (134)
446 PF06632 XRCC4: DNA double-str 44.9 2.1E+02 0.0046 26.3 9.5 25 103-127 148-172 (342)
447 PF06008 Laminin_I: Laminin Do 44.8 2E+02 0.0043 24.6 10.5 61 100-160 46-106 (264)
448 PF15058 Speriolin_N: Sperioli 44.6 31 0.00066 29.7 3.7 26 123-148 8-33 (200)
449 PF00261 Tropomyosin: Tropomyo 44.6 2E+02 0.0043 24.5 11.4 12 141-152 176-187 (237)
450 PF04999 FtsL: Cell division p 44.4 47 0.001 24.1 4.3 27 100-126 43-69 (97)
451 PF06305 DUF1049: Protein of u 44.2 35 0.00076 23.0 3.4 7 102-108 58-64 (68)
452 PF10018 Med4: Vitamin-D-recep 44.2 1.8E+02 0.0039 23.9 10.4 68 102-170 12-127 (188)
453 cd07599 BAR_Rvs167p The Bin/Am 44.2 1.8E+02 0.004 24.0 10.4 64 91-154 116-187 (216)
454 PF04340 DUF484: Protein of un 43.9 1E+02 0.0022 25.8 6.9 15 103-117 51-65 (225)
455 PRK15396 murein lipoprotein; P 43.8 1.3E+02 0.0028 22.1 8.0 31 100-130 26-56 (78)
456 COG5185 HEC1 Protein involved 43.7 1.4E+02 0.0031 29.3 8.4 56 98-153 486-545 (622)
457 cd07596 BAR_SNX The Bin/Amphip 43.7 1.6E+02 0.0035 23.3 7.9 25 94-118 112-136 (218)
458 KOG4010 Coiled-coil protein TP 43.5 81 0.0017 27.2 6.1 29 103-131 48-76 (208)
459 PF09006 Surfac_D-trimer: Lung 43.4 74 0.0016 21.4 4.7 22 102-123 2-23 (46)
460 PRK11519 tyrosine kinase; Prov 43.2 3E+02 0.0065 27.3 10.9 25 89-113 264-288 (719)
461 PF05600 DUF773: Protein of un 43.1 1.4E+02 0.0031 28.7 8.4 50 96-145 443-492 (507)
462 KOG0996 Structural maintenance 43.1 3.3E+02 0.0072 29.5 11.4 25 131-155 567-591 (1293)
463 PF14712 Snapin_Pallidin: Snap 43.1 1.2E+02 0.0026 21.6 9.7 60 100-159 15-82 (92)
464 PF10779 XhlA: Haemolysin XhlA 43.1 1.1E+02 0.0025 21.3 7.5 30 104-133 18-47 (71)
465 PRK11091 aerobic respiration c 43.1 3.2E+02 0.007 26.5 13.4 56 102-157 106-161 (779)
466 TIGR02680 conserved hypothetic 43.0 4.6E+02 0.01 28.3 13.2 30 95-124 878-907 (1353)
467 KOG4603 TBP-1 interacting prot 43.0 2.2E+02 0.0047 24.5 9.1 22 133-154 122-143 (201)
468 PRK06975 bifunctional uroporph 42.7 2.6E+02 0.0056 27.7 10.3 29 102-130 381-409 (656)
469 PF04871 Uso1_p115_C: Uso1 / p 42.7 1.7E+02 0.0037 23.2 10.6 54 100-153 56-110 (136)
470 PF09766 FimP: Fms-interacting 42.6 92 0.002 28.4 6.8 41 94-134 103-143 (355)
471 PF07246 Phlebovirus_NSM: Phle 42.6 2.5E+02 0.0055 25.2 10.2 36 128-163 203-238 (264)
472 KOG0980 Actin-binding protein 42.4 4.4E+02 0.0094 27.8 16.9 13 12-24 254-266 (980)
473 PLN02939 transferase, transfer 42.2 3.2E+02 0.0068 28.9 11.1 34 125-158 224-257 (977)
474 PF10205 KLRAQ: Predicted coil 42.2 1.6E+02 0.0035 22.8 8.9 42 110-151 30-71 (102)
475 PF14988 DUF4515: Domain of un 42.2 2.1E+02 0.0047 24.2 11.0 37 121-157 150-186 (206)
476 PLN02678 seryl-tRNA synthetase 42.0 3.1E+02 0.0068 26.1 12.0 65 99-163 33-100 (448)
477 COG5481 Uncharacterized conser 41.9 1.3E+02 0.0028 21.5 7.1 52 104-157 9-61 (67)
478 PF13805 Pil1: Eisosome compon 41.9 2.6E+02 0.0057 25.1 9.6 51 79-129 145-195 (271)
479 PF14916 CCDC92: Coiled-coil d 41.8 69 0.0015 22.5 4.6 20 99-118 3-22 (60)
480 PF09766 FimP: Fms-interacting 41.8 2.5E+02 0.0054 25.6 9.4 57 105-161 90-149 (355)
481 TIGR03545 conserved hypothetic 41.8 2.4E+02 0.0053 27.5 9.8 86 75-160 167-252 (555)
482 PF11382 DUF3186: Protein of u 41.7 98 0.0021 27.6 6.7 43 101-143 34-76 (308)
483 PF13118 DUF3972: Protein of u 41.4 1.5E+02 0.0032 23.8 6.9 50 98-147 77-126 (126)
484 PF05531 NPV_P10: Nucleopolyhe 41.4 1.4E+02 0.0031 21.9 7.2 56 98-157 10-65 (75)
485 PRK11281 hypothetical protein; 41.3 4.7E+02 0.01 27.9 12.7 89 77-165 159-258 (1113)
486 PF12128 DUF3584: Protein of u 41.2 3.1E+02 0.0066 29.1 11.1 67 91-157 468-534 (1201)
487 TIGR01005 eps_transp_fam exopo 41.1 3.6E+02 0.0079 26.5 11.3 79 80-158 182-268 (754)
488 KOG0612 Rho-associated, coiled 40.8 3.9E+02 0.0085 29.1 11.5 82 73-154 472-556 (1317)
489 KOG4378 Nuclear protein COP1 [ 40.8 3.8E+02 0.0083 26.7 12.0 126 19-155 535-671 (673)
490 PF14645 Chibby: Chibby family 40.7 1.5E+02 0.0034 23.0 6.9 47 111-157 69-115 (116)
491 COG3879 Uncharacterized protei 40.7 2.6E+02 0.0057 24.8 9.1 73 83-157 29-105 (247)
492 PF04136 Sec34: Sec34-like fam 40.6 1.9E+02 0.0042 23.3 10.6 65 95-159 10-74 (157)
493 cd07591 BAR_Rvs161p The Bin/Am 40.4 2.3E+02 0.005 24.1 10.1 70 94-163 118-195 (224)
494 KOG4687 Uncharacterized coiled 40.4 3E+02 0.0065 25.4 10.4 74 81-154 33-117 (389)
495 PF13949 ALIX_LYPXL_bnd: ALIX 40.3 2.3E+02 0.0051 24.1 9.8 61 101-161 24-97 (296)
496 cd07611 BAR_Amphiphysin_I_II T 40.3 1.7E+02 0.0037 25.2 7.7 53 94-146 113-169 (211)
497 TIGR03513 GldL_gliding gliding 40.3 2.4E+02 0.0053 24.3 13.6 83 78-160 113-198 (202)
498 PF10482 CtIP_N: Tumour-suppre 40.2 1.5E+02 0.0033 23.6 6.7 53 105-157 13-65 (120)
499 PRK05892 nucleoside diphosphat 40.2 2E+02 0.0043 23.3 8.2 61 98-158 10-71 (158)
500 smart00150 SPEC Spectrin repea 40.1 1.2E+02 0.0025 20.5 9.8 63 99-161 31-97 (101)
No 1
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.53 E-value=3.4e-13 Score=116.78 Aligned_cols=85 Identities=28% Similarity=0.375 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
.-|||-.|||++||.+|+.+|.|||+++++++.+|.+|..||+.|+.+++.|+...+.|..+|..|+.++..|++.|..+
T Consensus 65 S~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 65 SWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 34788899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHH
Q 029952 154 RQILL 158 (185)
Q Consensus 154 ~~il~ 158 (185)
.+.-.
T Consensus 145 ~~~~~ 149 (292)
T KOG4005|consen 145 KQQQQ 149 (292)
T ss_pred HHHHH
Confidence 87543
No 2
>smart00338 BRLZ basic region leucin zipper.
Probab=99.46 E-value=5.7e-13 Score=92.83 Aligned_cols=62 Identities=34% Similarity=0.543 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 75 IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 75 ~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
.|+|+.+|+++||+||++||.||+.|+.+|+.+|..|+.+|..|..++..|..++..|..+|
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999999999999998876666555554443
No 3
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.41 E-value=1.9e-12 Score=90.05 Aligned_cols=61 Identities=36% Similarity=0.579 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
+.++.+|+++||+||+++|.||+.|+++|+.+|..|..+|..|..++..|...+..|..+|
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567899999999999999999999999999999999999999999998888888888777
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.35 E-value=4.5e-12 Score=119.39 Aligned_cols=98 Identities=23% Similarity=0.321 Sum_probs=84.2
Q ss_pred CCCcchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 029952 69 NQTVSVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT---- 144 (185)
Q Consensus 69 ~~~~~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~---- 144 (185)
++..+..--||..|||+|||||..||+|||+|+..||.++..|.+||+.|+.++..|+.++..++.||..|+--..
T Consensus 272 ~~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvpsp~~~~ 351 (655)
T KOG4343|consen 272 NVGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPSPKGRN 351 (655)
T ss_pred CCccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCCCcccc
Confidence 3344556667888999999999999999999999999999999999999999999999999999999999964333
Q ss_pred -HHHHHHHHHHHHHHHHHhhccC
Q 029952 145 -ILRRRLSEIRQILLYRQLQQVT 166 (185)
Q Consensus 145 -~Lr~rL~~l~~il~~~~~~~~~ 166 (185)
.-++++-++.-+|+|+.+.-.+
T Consensus 352 qKk~Rkvvaimv~maFi~f~~~~ 374 (655)
T KOG4343|consen 352 QKKKRKVVAIMVVMAFIIFNYGS 374 (655)
T ss_pred cccchhhhhHHHHHHHHHHhccC
Confidence 2357888999999998777554
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.17 E-value=2.6e-10 Score=77.19 Aligned_cols=51 Identities=37% Similarity=0.563 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
|+++.||+ +||+||++||.||+.++.+|+.+|..|..+|..|..++..|..
T Consensus 3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777888 9999999999999999999999999999999999888876653
No 6
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=99.04 E-value=4.7e-10 Score=99.63 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=49.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
-||+-|+++|||+||.+|+|||+|+..||.+|+.|+.+|..|-++|..|++-|.
T Consensus 290 rKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 290 RKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred hHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 345679999999999999999999999999999999999999999988887553
No 7
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.89 E-value=2.7e-09 Score=99.30 Aligned_cols=72 Identities=24% Similarity=0.362 Sum_probs=60.1
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+...-||.||||+|++||+.||+|||.|++.||.+|.....+|++|.+++ +.|+.+|..|-+++..|...+.
T Consensus 246 EEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV-------~~Le~~N~sLl~qL~klQt~v~ 317 (472)
T KOG0709|consen 246 EERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKV-------EELELSNRSLLAQLKKLQTLVI 317 (472)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHH-------HHHhhccHHHHHHHHHHHHHHh
Confidence 33444577999999999999999999999999999999999999998876 4566677777777777766554
No 8
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.05 E-value=6e-08 Score=72.15 Aligned_cols=56 Identities=29% Similarity=0.444 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..+-|..||.++||.+|+.+|.||..++.+|+.++..|+.+...|..++..+...+
T Consensus 26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457789999999999999999999999999999888777766666555444433
No 9
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=97.95 E-value=3.6e-05 Score=67.79 Aligned_cols=50 Identities=28% Similarity=0.496 Sum_probs=43.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
.|..++||++|.+||.||.+++..||.+|..|..+|..|...+..|+++.
T Consensus 208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v 257 (279)
T KOG0837|consen 208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQV 257 (279)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Confidence 35578999999999999999999999999999999999988776555544
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.91 E-value=8.4e-05 Score=66.26 Aligned_cols=55 Identities=27% Similarity=0.315 Sum_probs=43.3
Q ss_pred hhHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKR-RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 74 ~~deRk~-RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
..++++. |..+.|..+|-|.|+||++..+.|+-++..|+++|.+|+.+++.+..+
T Consensus 222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE 277 (294)
T KOG4571|consen 222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE 277 (294)
T ss_pred CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455554 446777778999999999999999999999999998888877654443
No 11
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=97.82 E-value=0.00039 Score=60.97 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
..+.+-..|+.+|=++|||||.+.+...+++..+|..|+.||..|+.++.
T Consensus 190 ~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 190 KKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred cCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666899999999999999998888888887776666655543
No 12
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.42 E-value=0.0019 Score=51.79 Aligned_cols=67 Identities=21% Similarity=0.427 Sum_probs=50.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
-|.+||-++||-.|.-+|-|+-.+-.+||.+-..|..+. +.|..||.+++.|...|+.+...+..-
T Consensus 52 lKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv--------------~~L~~e~s~~~~E~da~k~k~e~l~~~ 117 (135)
T KOG4196|consen 52 LKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQV--------------EKLKEENSRLRRELDAYKSKYEALQNS 117 (135)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345788999999999999999988888776665554443 444567888888888888888776554
Q ss_pred H
Q 029952 157 L 157 (185)
Q Consensus 157 l 157 (185)
.
T Consensus 118 ~ 118 (135)
T KOG4196|consen 118 A 118 (135)
T ss_pred h
Confidence 3
No 13
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=97.13 E-value=0.0037 Score=48.29 Aligned_cols=53 Identities=32% Similarity=0.423 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+|=.++..|+..-..|..++..|+..+..|..||..|+.|+..||.+|..+.+
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45566777777777788888888888889999999999999999999988876
No 14
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0072 Score=44.12 Aligned_cols=55 Identities=22% Similarity=0.388 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
-+.-|.-+|+.|+.+|..|..+.+.+.+....|+.||.+|+.+......||.+|-
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL 73 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL 73 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999999999999999999999999999999988764
No 15
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.91 E-value=0.0074 Score=46.97 Aligned_cols=53 Identities=25% Similarity=0.298 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+|=.++..|+..-..|..++..|+..+..|..||..|+.|+..||.+|..+.+
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~ 57 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA 57 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45556777777777778888888888888888999999999999999887643
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.89 E-value=0.021 Score=41.23 Aligned_cols=58 Identities=26% Similarity=0.436 Sum_probs=36.5
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNR-------LRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 100 ~l~eLe~qV~~-------L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.++.|+.+|.. |+.++.+|+.++..+......|..||.+|+.+......||..|-.-|
T Consensus 5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555554 55555555555555555677777777777777777777777665433
No 17
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.70 E-value=0.045 Score=39.52 Aligned_cols=49 Identities=12% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
+.-|+.++..|+.+|..|..+...|......|..|-......+..|=+|
T Consensus 20 i~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k 68 (72)
T PF06005_consen 20 IALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555555555555554444444444444333
No 18
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=96.68 E-value=0.016 Score=42.80 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
-+.-|.-+|+.|+.+|..|..+++.+......|..||..|+.+......||..|---
T Consensus 19 tI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567788888888888888888888888889999999999999999998877543
No 19
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=96.54 E-value=0.0053 Score=59.59 Aligned_cols=64 Identities=30% Similarity=0.419 Sum_probs=51.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.||+=+||.||+++|+||-.-+.+||.+|..|+.+-.+|..+- ..+...+..++++|..|.+-+
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er--------------~~~d~~L~~~kqqls~L~~~V 555 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRER--------------DELDSTLGVMKQQLSELYQEV 555 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999999999999999888876543 344555666777777776543
No 20
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.51 E-value=0.048 Score=38.93 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+..|+.+|..|=.....|+.++..|.++...+..|+..|...+..=+.|++.|-.-|.-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~ 60 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKA 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 56677888888777777888888888888888888888888888888888777655543
No 21
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=96.29 E-value=0.023 Score=44.45 Aligned_cols=47 Identities=30% Similarity=0.321 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.+|..|+...-.|..+++.+++++..+..||..|+-|+..||.||+.
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45666666666778888888999999999999999999999999998
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.20 E-value=0.053 Score=44.90 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRN---QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 100 ~l~eLe~---qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
++..|.. ....++.||..|..++..|..++..|+.||..|..++..+......|-.||..
T Consensus 88 fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~R 150 (161)
T TIGR02894 88 FLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDR 150 (161)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 57788899999999999999999999999999999999999999999888864
No 23
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=96.19 E-value=0.025 Score=37.48 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+|+.+...|+...+.|...+..|..||..|++++..|+.++.
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~ 43 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ 43 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466677777777788888888888888888888888887763
No 24
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=96.19 E-value=0.086 Score=38.30 Aligned_cols=60 Identities=28% Similarity=0.400 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQR--------VRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~--------L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+.+.+.+++.|+.||-.|+-+|-.|.+++.. +..+|-.|+.++..|+..|......|...
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a 69 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEA 69 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999999887774 58899999999999999999998887654
No 25
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=96.08 E-value=0.092 Score=37.61 Aligned_cols=57 Identities=25% Similarity=0.404 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.+++.+..++.....+|..|..+-+....++.....+|..|++|+..|++.|....
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999988888999999999999999999998876543
No 26
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=96.02 E-value=0.081 Score=37.77 Aligned_cols=57 Identities=25% Similarity=0.319 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
..++.|-.....|+.+|..|+.++..+..+-..|...|..=+..+..+=.||.+|++
T Consensus 7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 467888889999999999999999999999999999999999999999999988875
No 27
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=95.93 E-value=0.054 Score=41.84 Aligned_cols=50 Identities=32% Similarity=0.448 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
..+.+|+.++..|-.+-..|+..+..|.++.+.|..||..||..+.++..
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999999999988765
No 28
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.91 E-value=0.15 Score=43.35 Aligned_cols=10 Identities=50% Similarity=0.757 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 029952 111 LRMENRELSN 120 (185)
Q Consensus 111 L~~eN~~L~~ 120 (185)
|+.+|++|..
T Consensus 137 L~~~n~~L~~ 146 (206)
T PRK10884 137 LKEENQKLKN 146 (206)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 29
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=95.80 E-value=0.063 Score=41.80 Aligned_cols=49 Identities=29% Similarity=0.355 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
..+..|+.++..|-.+-..|+..+..+.++.+.|..||..||..+.++.
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~ 56 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELE 56 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678999999999999999999999999999999999999999999873
No 30
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=95.55 E-value=0.34 Score=42.92 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+.+.++.+...|..+...|..++..|.+.|..|..+..+|..+|+.+++-|+-.
T Consensus 89 KaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~ 144 (292)
T KOG4005|consen 89 KARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 35677788888888888888888888888888888888888888888888887766
No 31
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.31 E-value=0.16 Score=43.29 Aligned_cols=60 Identities=22% Similarity=0.289 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+|-..|++|+.-|++|..++..|...+..++..|++|..++..|+..+..+.+.+.+.
T Consensus 3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a 62 (193)
T PF14662_consen 3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA 62 (193)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788899999999999999999999999999999999999999999999998888765
No 32
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.05 E-value=0.79 Score=44.45 Aligned_cols=82 Identities=12% Similarity=0.250 Sum_probs=68.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+..+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.|+..|.+-+..
T Consensus 152 ~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~ 231 (546)
T PF07888_consen 152 KEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKT 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666777777777788888888888888888888998888888888899999999999999999999999887765
Q ss_pred HH
Q 029952 160 RQ 161 (185)
Q Consensus 160 ~~ 161 (185)
+.
T Consensus 232 l~ 233 (546)
T PF07888_consen 232 LT 233 (546)
T ss_pred HH
Confidence 53
No 33
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=94.74 E-value=0.053 Score=45.03 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|+++|.+.++-=..|.-|..+|+ +-..|..++++||.|+.+|++.| .+.+.+.
T Consensus 2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl-~V~ek~~ 54 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL-IVQEKLR 54 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH----------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 78999999999999999999983 45678889999999999999988 6666554
No 34
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.71 E-value=1.1 Score=37.14 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..+.+|+..+......+..|..++..|.-++..++.....|..|..+|-.|+
T Consensus 130 ~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 130 EKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444445554444
No 35
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=94.49 E-value=0.42 Score=35.34 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.|..+-..|+..+..|..++..+..||..|+.|...|..-+++|.
T Consensus 20 ~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm 64 (80)
T PF10224_consen 20 ELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLM 64 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555556666666666666677777777763
No 36
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.37 E-value=2 Score=33.90 Aligned_cols=81 Identities=22% Similarity=0.313 Sum_probs=63.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..|=...||..-....++...++.|...+..|+.++..+..++..+......+..++..+...+..++..+..+...+..
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~ 126 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ 126 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667888888888888888888888888888888888888888888888888877777777777777776666655
Q ss_pred H
Q 029952 160 R 160 (185)
Q Consensus 160 ~ 160 (185)
+
T Consensus 127 ~ 127 (151)
T PF11559_consen 127 R 127 (151)
T ss_pred H
Confidence 4
No 37
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=94.36 E-value=0.33 Score=33.64 Aligned_cols=44 Identities=9% Similarity=0.170 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcc
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR--QLQQV 165 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~--~~~~~ 165 (185)
+..+.-.+..+..||..|+.++..|.+.+..|-.++... +++||
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~Vs~~iNPF 54 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVVSNQINPF 54 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 333444456677788899999999999998888888776 44444
No 38
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.21 E-value=1 Score=35.63 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
|.|-..+.+.|..++..+..++..|...+..|+.++..++.+...+......|..++..+...+
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~ 110 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKL 110 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666666666666666666666666666665555555555555554444
No 39
>PRK11637 AmiB activator; Provisional
Probab=94.05 E-value=2 Score=39.53 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.....+..+.+++.+++.+..+...+..++..+..++..+..+=..|..++..++.+|......|..+
T Consensus 62 ~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 62 SVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666666666666666666666666666666666666666666666666666655444
No 40
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=93.99 E-value=0.64 Score=44.36 Aligned_cols=52 Identities=17% Similarity=0.179 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
-+....+||.+++.|+.|.+.|..+...+.+++..++.||..|+.++..++.
T Consensus 74 qQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 74 MQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3457889999999999999999999999999999999999999888754444
No 41
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.99 E-value=1.6 Score=37.13 Aligned_cols=40 Identities=8% Similarity=0.259 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
|..++.........|..||+.|+.++..++.++..++.-+
T Consensus 123 l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 123 MQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555444433
No 42
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.80 E-value=1.5 Score=43.70 Aligned_cols=42 Identities=19% Similarity=0.275 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE 142 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae 142 (185)
-+-+..+..+|+.|...|+.++....+++..++.|...||..
T Consensus 540 ~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 540 AESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888888888888888877767654
No 43
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=93.73 E-value=0.81 Score=33.91 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.-++.||.+|...-....-|+-++..|+++...|..|+..++.....|.+.-..+.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34688999999888888888888888888888888887775555555555544443
No 44
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.60 E-value=0.5 Score=38.14 Aligned_cols=54 Identities=24% Similarity=0.394 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHC--QRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~--~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.+|+.++..|+.++..|..++..|.... ..|..+-..|+.++..|..||..|.
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555554444332 3344444555555555555555544
No 45
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=93.53 E-value=0.61 Score=40.99 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
|.+-.++....++..-..=+.+...+.++.+.|+.||..||.++..|+..|..|.+++....
T Consensus 195 y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~ 256 (269)
T KOG3119|consen 195 YKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLP 256 (269)
T ss_pred HHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333333333333333334444667777889999999999999999999999999987643
No 46
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.36 E-value=1.1 Score=39.57 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+..++++..+-..|..++.+|..++..+++++..++.||.+|......|-..+..|
T Consensus 141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L 196 (290)
T COG4026 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL 196 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 34466666777777777777888888888888999999999877655444333333
No 47
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=93.16 E-value=2.6 Score=36.05 Aligned_cols=50 Identities=10% Similarity=0.187 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
-.+.+..|..+++.|+..|..|...+.........|..+-..+..-..+|
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l 103 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQEL 103 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555554544444444444333333
No 48
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.15 E-value=0.51 Score=31.21 Aligned_cols=41 Identities=20% Similarity=0.349 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.|......|+..+..|.++|..|..|...|+..+..+...+
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35667788899999999999999999999999988887654
No 49
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=93.13 E-value=1 Score=33.33 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
++|..++..|+..-..|..++..+++.+..|..||..|..=+..|..
T Consensus 19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888999999999999999999999999988888865
No 50
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.05 E-value=4 Score=43.15 Aligned_cols=15 Identities=33% Similarity=0.310 Sum_probs=8.4
Q ss_pred ccCCCCCCCCCCCCCCC
Q 029952 14 MFGNPFPDFESEFTPWD 30 (185)
Q Consensus 14 ~~~~~~~~~~~g~~~w~ 30 (185)
|-||..|- +|||+-.
T Consensus 390 f~Gn~LPF--IGfTy~~ 404 (1317)
T KOG0612|consen 390 FSGNHLPF--IGFTYTH 404 (1317)
T ss_pred CcCCcCCe--eeeeecc
Confidence 34555553 5676665
No 51
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.04 E-value=1.9 Score=34.00 Aligned_cols=12 Identities=17% Similarity=0.542 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 029952 145 ILRRRLSEIRQI 156 (185)
Q Consensus 145 ~Lr~rL~~l~~i 156 (185)
+|+..+.++..+
T Consensus 100 EL~~Dv~DlK~m 111 (120)
T PF12325_consen 100 ELRADVQDLKEM 111 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 52
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=92.82 E-value=0.7 Score=42.73 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
-=+|-+.+...||.-+..++.||+.|..+++.+.++|...+.|++.|..|+++-.+..
T Consensus 121 vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layq 178 (401)
T PF06785_consen 121 VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQ 178 (401)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Confidence 3456667778888889999999999999999999999999999998877766644333
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=92.73 E-value=2 Score=32.67 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFA--LHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L--~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
|+..++.|+.++......-..+..++..+ ...++.|..+=..++.++..|..+|..+..++....-
T Consensus 33 ~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 33 KREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667666666666666666666666 6677777777788888888888888888887776643
No 54
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=92.71 E-value=2.8 Score=32.71 Aligned_cols=53 Identities=21% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
.-+..-.|..+-|+..=...-++|+..+..|+.++.....++..|..++..+.
T Consensus 19 a~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~ 71 (107)
T PF09304_consen 19 ASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEAR 71 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555444444444555555555555555555544444444433
No 55
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.57 E-value=1.9 Score=38.43 Aligned_cols=62 Identities=15% Similarity=0.333 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+...+.+++..+..++.+...|..++..+..+...+..++..+.+++..|...|..+..-|.
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556656666666666666666665555555555555555555555555555544443
No 56
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.57 E-value=3 Score=34.52 Aligned_cols=70 Identities=10% Similarity=0.084 Sum_probs=45.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.+.+...+..-+.-.......+.++..-+..|..|...|.-++..+..++..|..||..|-...+..+.+
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~~ 187 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKAQ 187 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555566666777777777777777777777777777777777777776666655443
No 57
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=92.52 E-value=2.4 Score=29.04 Aligned_cols=38 Identities=11% Similarity=0.266 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..+..|...+..|..+|..|+.++..|...+..|...+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555666666777777777777777777776665543
No 58
>PRK04406 hypothetical protein; Provisional
Probab=92.47 E-value=1.8 Score=31.44 Aligned_cols=52 Identities=8% Similarity=0.099 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.++.++.+|+.....+...++.|...+..-..+-..|+.++..|..||..+
T Consensus 7 ~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~ 58 (75)
T PRK04406 7 EQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666666666666666666666655555556667777777777766653
No 59
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.34 E-value=6 Score=33.32 Aligned_cols=83 Identities=10% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRL-------RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L-------~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
+-.+.++....+-+-.+.+...+...++.++..- +.+-..|..++..|+.+.+.+..++..--+++..|+..+
T Consensus 89 ~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~ 168 (190)
T PF05266_consen 89 KFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEA 168 (190)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777777777777777777777755 444445555555555554444444555555566666666
Q ss_pred HHHHHHHHHH
Q 029952 151 SEIRQILLYR 160 (185)
Q Consensus 151 ~~l~~il~~~ 160 (185)
..+.+-+.-.
T Consensus 169 ~~l~~~~~~~ 178 (190)
T PF05266_consen 169 EALKEEIENA 178 (190)
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 60
>smart00338 BRLZ basic region leucin zipper.
Probab=92.29 E-value=0.74 Score=31.64 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+..|..++..|..+|..|+.++..|+..+..|.+++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777788888888888888777777665
No 61
>PRK02119 hypothetical protein; Provisional
Probab=92.22 E-value=1.8 Score=31.12 Aligned_cols=52 Identities=17% Similarity=0.199 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
..++.++..|+.........++.|...+..-..+-..|+.++..|..||..+
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444455555555544555555555544444555566666666666666653
No 62
>smart00340 HALZ homeobox associated leucin zipper.
Probab=92.01 E-value=0.36 Score=32.00 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
-+.|+..|..|..||.+|..|+.+||.
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999999999999986
No 63
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.94 E-value=3.7 Score=36.95 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=48.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-----------HHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL-------H-----------HCQRVRTDNDRLRS 141 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~-------~-----------~~~~L~~EN~~Lra 141 (185)
..+-+.-|+--+....--.++-.+|+.++.+++..|..|..+++.|+ + +...|+.+|.++++
T Consensus 26 kq~f~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~a 105 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHA 105 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556655555555555555555555555555555544444443 2 34567888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 142 EHTILRRRLSEIRQI 156 (185)
Q Consensus 142 e~~~Lr~rL~~l~~i 156 (185)
....|+.++..|+|.
T Consensus 106 ikeql~kyiReLEQa 120 (333)
T KOG1853|consen 106 IKEQLRKYIRELEQA 120 (333)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888888887764
No 64
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.93 E-value=1.7 Score=41.60 Aligned_cols=61 Identities=20% Similarity=0.270 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQR-VRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~-L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++..|..+-+.|..||..|+++...+.+++.. |..+...|..+...|+..+..+...|...
T Consensus 74 ~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 74 RLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777777777777766666555544 33555555555555555555555544444
No 65
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=91.81 E-value=0.48 Score=41.86 Aligned_cols=35 Identities=29% Similarity=0.379 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQR----VRTDNDRLRS 141 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~----L~~EN~~Lra 141 (185)
.+.+|..||.+|+.++..+..+... ++.||++||.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888777665443332 4555555443
No 66
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.77 E-value=2 Score=41.80 Aligned_cols=68 Identities=24% Similarity=0.348 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHHHHH
Q 029952 92 RSRMRKQKHLENLR-------NQLNRLRMENRELSNRLRFALH-----------------------------HCQRVRTD 135 (185)
Q Consensus 92 RSR~RKk~~l~eLe-------~qV~~L~~eN~~L~~~l~~L~~-----------------------------~~~~L~~E 135 (185)
.+|.|-|++|.+|- .+|..|+.+|..|...++.++. ..+.++.+
T Consensus 35 ~sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~e 114 (546)
T KOG0977|consen 35 DSREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIE 114 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666655 5788999999999999888773 44556777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 136 NDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 136 N~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
=..|+.|+.+|+.++.........
T Consensus 115 i~kl~~e~~elr~~~~~~~k~~~~ 138 (546)
T KOG0977|consen 115 ITKLREELKELRKKLEKAEKERRG 138 (546)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhh
Confidence 778888888888888777555443
No 67
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.72 E-value=6.3 Score=33.74 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
++.++++..+...|..+...|..++..|......+...-..++.++..|.+++..+..
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555555555555555553
No 68
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=91.67 E-value=0.72 Score=36.20 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
..+.+|+.++..|-++...|+..+..+.+....|.-||..||..+.+
T Consensus 8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 46789999999999999999999999999999999999999998876
No 69
>PRK04325 hypothetical protein; Provisional
Probab=91.54 E-value=2 Score=30.93 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.+||.++..++.-...|... +..-..+-..|+.++..|..||..+
T Consensus 11 i~~LE~klAfQE~tIe~LN~v-------v~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNAT-------VARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555555555554444443 3333444456666666666666653
No 70
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=91.36 E-value=0.016 Score=53.26 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=44.6
Q ss_pred cchhHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 029952 72 VSVIDERKRRRMISNRESARR---SRMRKQKHLENLRNQLNRLR-MENRELSNRLR 123 (185)
Q Consensus 72 ~~~~deRk~RR~lsNRESARR---SR~RKk~~l~eLe~qV~~L~-~eN~~L~~~l~ 123 (185)
....++|+..|+++|+.+|.+ +|.||+.+...|..+|+.|+ .+|..|..++.
T Consensus 148 ~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is 203 (395)
T KOG1414|consen 148 TPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQIS 203 (395)
T ss_pred CCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccc
Confidence 456788899999999999999 99999999999999999999 77766555443
No 71
>PRK11637 AmiB activator; Provisional
Probab=91.34 E-value=5.8 Score=36.49 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=53.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
+.+.....+.....-...+..|+.++..+..+...+..++..+..++..+..+=..++.++..++..|...-..
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555667788888888888888888888888888888888888777777777766666554433
No 72
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.26 E-value=2.3 Score=30.52 Aligned_cols=50 Identities=14% Similarity=0.093 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
++.++.+|+.........++.|.+.+..-..+-..|..++..|..||..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444444444444444444444444445566666667777766664
No 73
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=91.15 E-value=4.3 Score=29.17 Aligned_cols=61 Identities=15% Similarity=0.267 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
|...+..|-.+-..|......+...|..|+.+...++.+...|+..+..+...+..+...+
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5666777777777777777777777777777777777777777766666666666666554
No 74
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=91.03 E-value=7.2 Score=31.55 Aligned_cols=81 Identities=16% Similarity=0.166 Sum_probs=50.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
|-..-...|++.+-.--.-+++.+..|+.++..+..+...|...+..+...-..|..+=...+.++.+|.....++...|
T Consensus 31 reLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l 110 (140)
T PF10473_consen 31 RELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLL 110 (140)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34455677777777777777777777777777777777777777666655544444444444444444444444444444
Q ss_pred H
Q 029952 158 L 158 (185)
Q Consensus 158 ~ 158 (185)
.
T Consensus 111 ~ 111 (140)
T PF10473_consen 111 Q 111 (140)
T ss_pred H
Confidence 3
No 75
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.76 E-value=6.5 Score=37.58 Aligned_cols=62 Identities=19% Similarity=0.167 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
-..+.|+.++.+|..+|.+|+..+..|+..+..|..|-+++-.++..|+.+|.+..+.-..+
T Consensus 297 le~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm 358 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRM 358 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778899999999999999999999999999999999999999999998876655443
No 76
>PRK00295 hypothetical protein; Provisional
Probab=90.75 E-value=3 Score=29.58 Aligned_cols=47 Identities=17% Similarity=0.179 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
++.+||.++..++.-...|...+. .-..+-..|+.++..|..||..+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~-------~Qq~~I~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLV-------EQQRVIERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 467777777776666655555443 33334456666666666666664
No 77
>PRK09039 hypothetical protein; Validated
Probab=90.73 E-value=6.1 Score=35.85 Aligned_cols=47 Identities=17% Similarity=0.123 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+|..|+.+...|+.++..+...+..++.+....+.++..|..+|...
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444455555555444443
No 78
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=90.70 E-value=1.3 Score=43.22 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
..|+..+++|..||+.||.|.+.|+++|..|..
T Consensus 305 ~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 305 LGLEARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 345556677888888888888888888887753
No 79
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=90.60 E-value=1.9 Score=33.60 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+..|.++...+..||-.||+|...|-+-+++|...-.+.
T Consensus 70 nTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMSaSSVF 110 (120)
T KOG3650|consen 70 NTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMSASSVF 110 (120)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhhhhhh
Confidence 34444445555566667777777777777777776554443
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.56 E-value=2.1 Score=38.94 Aligned_cols=55 Identities=24% Similarity=0.452 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
++|...++.|+.+|..|+.++...+.++..|..||..||.....+..+...-+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~ 77 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF 77 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888888888888888888888888888888888877777766554443
No 81
>PRK00846 hypothetical protein; Provisional
Probab=90.32 E-value=3.2 Score=30.52 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.++.++..|+.........++.|...+.....+-..|+.++..|..||..+.
T Consensus 10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555555555555555556666677777777777776654
No 82
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=90.30 E-value=6 Score=29.42 Aligned_cols=68 Identities=18% Similarity=0.289 Sum_probs=55.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
-++..+.+.+=|++=..|.-+.....+++.++..|...-..|-.++.....++..|+.-|..+...+.
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888888877777777779999999999999999999999888888888888866654444
No 83
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=90.16 E-value=6 Score=31.12 Aligned_cols=16 Identities=19% Similarity=0.358 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRR 148 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~ 148 (185)
..++..|++.+..|+.
T Consensus 95 ~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 95 SEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 84
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=90.05 E-value=3.5 Score=33.22 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRL--RFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l--~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
-+..+.+|+.++..|+.+-..|.... ..|......+..|+..|...+..|+.
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666666666665555543 44555555666666666666665554
No 85
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=90.03 E-value=2.7 Score=29.69 Aligned_cols=49 Identities=27% Similarity=0.347 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.++.+||.++..++.-...|...+..-.. +-..|+.++..|..||..+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~-------~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQR-------QIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhc
Confidence 45677777777776666666655544444 44455555566666666654
No 86
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=90.01 E-value=8 Score=31.78 Aligned_cols=59 Identities=25% Similarity=0.341 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..+|..+|..|+.+|..|...+..+..+...+......|+.+...|..|-..+..-+.-
T Consensus 91 ~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~e~l~~~~e 149 (158)
T PF09744_consen 91 RKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERERELLRKLKE 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888888888888888888888888888888888888888777666555543
No 87
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.90 E-value=16 Score=33.85 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.+++++.+....+.|+.--++|..-.+.|......|+.+-..|.+.+..|..+...
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44455555555555555555555555555555555555555555555555555544
No 88
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=89.79 E-value=4.3 Score=36.42 Aligned_cols=65 Identities=14% Similarity=0.302 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..++.+..++..|+.+|..++.+.......+..+..|+..+..++..++.++..|..+...+|-+
T Consensus 244 ~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 244 KEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 66788888999999999999999999999999999999999999999999999999988777643
No 89
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=89.72 E-value=2.4 Score=41.17 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
|.+.|..-...+.++...+..++++...++.++..+......|..||.+|+.++..++..|.
T Consensus 132 ~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 132 AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444455566667777788888888888888888888888888888888888776443
No 90
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=89.65 E-value=3.8 Score=37.04 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
=+.+-+.|.-+|+.|+.+|.+||.++.+|...+..|.|+|.-+.
T Consensus 246 kRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 246 KRAEKEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788899999999999999999999999999887553
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.61 E-value=4.8 Score=32.25 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
++.++.++..|+.++..+..+|..|..++..++.+=..+...+..+...+
T Consensus 16 ~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 16 AEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433333333333
No 92
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.56 E-value=4.1 Score=36.40 Aligned_cols=60 Identities=18% Similarity=0.213 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.++..|..++..+..+...++..+..++.++..+..+-..+.++..++...+..+..++.
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~ 268 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIRE 268 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666666666666666666666665554
No 93
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=89.34 E-value=1.2 Score=30.49 Aligned_cols=50 Identities=30% Similarity=0.331 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
|+...+++|+.++..=+ |...+ .-......+..++.||..|++++.-++.
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~--d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSL--DRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccC--CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35567777777665533 22221 2244566777888888888888876553
No 94
>PF15294 Leu_zip: Leucine zipper
Probab=89.23 E-value=2.2 Score=38.27 Aligned_cols=48 Identities=21% Similarity=0.365 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
|..++..|+.||..|+.++..+..+|-....|+..|..++.+|+...+
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~ 177 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQG 177 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999988888887333
No 95
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.07 E-value=13 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l 122 (185)
.++.++.+..++..++..+......+
T Consensus 82 ~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 82 LRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 96
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=88.71 E-value=3.4 Score=29.49 Aligned_cols=40 Identities=25% Similarity=0.310 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
.....|..|+.....+++.....+..|..||..|+.++..
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444433
No 97
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.69 E-value=3.3 Score=29.23 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
|+.++..|+.....+...+..|.. .-.....++..|+..|..|..-|.-+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~-------~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELND-------VVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566655555555444433332 22334455556666666666555543
No 98
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.53 E-value=7.1 Score=34.79 Aligned_cols=66 Identities=17% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccC
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR--QLQQVT 166 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~--~~~~~~ 166 (185)
..+++.+|..|..+...+..++..+..++..+..|=..|..++.+|+.+|..-..+|.-+ -.|..+
T Consensus 47 ~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG 114 (265)
T COG3883 47 KKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG 114 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345666666666666666666666666666677777777777777777777777777654 444444
No 99
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.22 E-value=12 Score=30.20 Aligned_cols=61 Identities=23% Similarity=0.429 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
..+..++.++..+..+..+-..|...+...+..+..+..+-..+......|...+.+...+
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333444444444444444444444444444333
No 100
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=88.17 E-value=14 Score=32.98 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.+++.+..++...+.+-..+..++...+.++..++.+=.+|...+..++.++..+
T Consensus 206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666667777777777777777777777766666666666666666666554
No 101
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=88.11 E-value=7.9 Score=35.18 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
+..+..|-.++.+|+...+.+..+...|..++.....-...|.+|+.+|+.|...+...|+-.|
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQ 296 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQ 296 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455555555555555555555555544444445566777777777777776666554
No 102
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.11 E-value=2 Score=32.80 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
+++.+++.++..|+.+|..|..++.
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 103
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=88.01 E-value=18 Score=31.79 Aligned_cols=50 Identities=22% Similarity=0.297 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
.+++..-.+.+++.=.-++..+++|+.+|..++.+.+.++.++..+....
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777888888888888888888888888777766544
No 104
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=87.96 E-value=3 Score=35.99 Aligned_cols=17 Identities=41% Similarity=0.329 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFA 125 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L 125 (185)
.+|.+||.+|++++..|
T Consensus 72 ~~l~~en~~L~~e~~~l 88 (276)
T PRK13922 72 FDLREENEELKKELLEL 88 (276)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 105
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.93 E-value=6.8 Score=33.48 Aligned_cols=56 Identities=25% Similarity=0.401 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRE-------LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~-------L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..+++|..-+..|+.+|.. |..+.+.|...++.|..||..|..+...|..+...|.
T Consensus 67 eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 67 EELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 3444444444444443333 3444455555566666666666666666666666653
No 106
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.74 E-value=16 Score=30.84 Aligned_cols=86 Identities=17% Similarity=0.272 Sum_probs=58.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL--------RSEHTILRRR 149 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L--------rae~~~Lr~r 149 (185)
...++.+.+-+.-+.+=..-+..+..++.++..|+.++..|..++..+......|..--... --...-|..+
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkK 151 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKK 151 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888877777777788888888888888888888888777776666654222111 1123346777
Q ss_pred HHHHHHHHHHHHhh
Q 029952 150 LSEIRQILLYRQLQ 163 (185)
Q Consensus 150 L~~l~~il~~~~~~ 163 (185)
|..|...|.....|
T Consensus 152 l~~l~~~lE~keaq 165 (201)
T PF13851_consen 152 LQALSEQLEKKEAQ 165 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776544
No 107
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=87.63 E-value=16 Score=30.87 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 141 SEHTILRRRLSEIRQIL 157 (185)
Q Consensus 141 ae~~~Lr~rL~~l~~il 157 (185)
.+...++.++..+...+
T Consensus 126 ~~~~~~~~~l~~l~~~l 142 (302)
T PF10186_consen 126 NELEERKQRLSQLQSQL 142 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444433333
No 108
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=87.61 E-value=2 Score=41.13 Aligned_cols=58 Identities=19% Similarity=0.357 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFAL-HHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~-~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+.|..+-+.|+.....+..+++... ....++..|-++|+.+...|+..|..|..-|.-
T Consensus 83 ~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 83 EALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466666677776666666665544 334456667777777777777777777666643
No 109
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=87.59 E-value=2.6 Score=39.03 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
.+...|+.||..|+++++.|+.+.++| ||.+|+
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 355677888888888888888888777 666665
No 110
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=87.52 E-value=4.8 Score=31.81 Aligned_cols=24 Identities=17% Similarity=0.278 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
|+.+|..|.++...|+.||..||.
T Consensus 72 Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 72 LKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444445556666666654
No 111
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=87.46 E-value=4.3 Score=35.49 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l 122 (185)
..+||.++..+..+...|+.++
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666666666555555554443
No 112
>PRK00736 hypothetical protein; Provisional
Probab=87.26 E-value=7 Score=27.67 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.++.+||.++..++.-...|...+..-. .+-..|..++..|..||..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq-------~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQW-------KTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3477888888877766666655543322 2334555556666666655
No 113
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.25 E-value=6.2 Score=39.92 Aligned_cols=69 Identities=23% Similarity=0.318 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
=.||+..+..|..++..+..++..++..+..++..+.....++..|.+++..|+.+|..-...|...+-
T Consensus 296 L~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~ 364 (775)
T PF10174_consen 296 LSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQA 364 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356777889999999999999999999999999999999999999999999999999998888876653
No 114
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=86.55 E-value=1 Score=31.72 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
|+.+|..|.++...|+.||..||.
T Consensus 19 LK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 19 LKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444455556655554
No 115
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.39 E-value=12 Score=35.48 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=35.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
++++-..++=+.-.++....+.....|+.+++.++.+...+..++.........+...+..+...+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 344444444444444445555556666666666666666655555544444444444444444444333
No 116
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.18 E-value=11 Score=32.58 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
|+.+++....+-..+..+...|+.+...+..|-++|.++...|+.++
T Consensus 163 L~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 163 LETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444433
No 117
>PF15058 Speriolin_N: Speriolin N terminus
Probab=86.08 E-value=1.6 Score=37.29 Aligned_cols=34 Identities=41% Similarity=0.602 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE 142 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae 142 (185)
.+.|..+++.|..||.+|++.+. |..||.+||.-
T Consensus 7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksa 40 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSA 40 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHH
Confidence 46788999999999999988764 45567666543
No 118
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=85.69 E-value=11 Score=31.45 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..++..+..+...|..+|..|..++..|..++..+.
T Consensus 103 ~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~ 138 (161)
T TIGR02894 103 QKENERLKNQNESLQKRNEELEKELEKLRQRLSTIE 138 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444333
No 119
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=85.42 E-value=12 Score=29.92 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+-..+..|..++..|+.+...+..++..+..... +.......+..|.+|+.-|..-|.
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~le----e~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLE----ESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHhHHHHHhhHHHHHHHHH
Confidence 3344444444444444444444444443333322 222222333355555555554443
No 120
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=85.30 E-value=21 Score=29.84 Aligned_cols=39 Identities=18% Similarity=0.441 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
..+|+.++..|+.++..|..++..+..++..++..+..+
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~ 160 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEEL 160 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888899999888888888888888877666554
No 121
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=85.29 E-value=7 Score=34.67 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
...+++..++..+..+|..|..++..+...+..+..+=..|+.++..|...+..+.
T Consensus 135 e~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 135 EDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 44455566666666666666666666666665555555555555555555444443
No 122
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=85.20 E-value=13 Score=37.18 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRE 117 (185)
Q Consensus 103 eLe~qV~~L~~eN~~ 117 (185)
+||.++..|+.|-..
T Consensus 549 ~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 549 QLESELKKLRRELKQ 563 (697)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444433333
No 123
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=85.16 E-value=28 Score=35.03 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..+......+..+...+..++..++..+..+..-+
T Consensus 451 ~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~l 485 (1164)
T TIGR02169 451 KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKEL 485 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444454444433
No 124
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=85.10 E-value=33 Score=33.61 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 134 TDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 134 ~EN~~Lrae~~~Lr~rL~~ 152 (185)
..+..|..+...|..++..
T Consensus 199 ~~~e~l~~E~~~L~~q~~e 217 (546)
T PF07888_consen 199 ESSEELKEERESLKEQLAE 217 (546)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333344444443333
No 125
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=85.10 E-value=35 Score=32.30 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQ 107 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~q 107 (185)
.-++|.+||+...-|-=||-|..=...+.+|..-
T Consensus 225 ~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~l 258 (411)
T KOG1318|consen 225 TALERDRRKRDNHNEVERRRRENINDRIKELGQL 258 (411)
T ss_pred chhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777888888888888777777777653
No 126
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=85.08 E-value=2.9 Score=31.96 Aligned_cols=47 Identities=11% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+|+.+-+-...+...+...+..++.+|..|+.|+..++.+.+.+..
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~ 50 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS 50 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 34444444455555566666777888888888888877776655443
No 127
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.07 E-value=13 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.031 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
++.|+.+|.+.-.-..-|.-++..|++
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKE 32 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKE 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655543333333333333333
No 128
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.86 E-value=25 Score=32.79 Aligned_cols=30 Identities=10% Similarity=0.197 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
.|+.++..|+.++..+..++..+..++..+
T Consensus 362 ~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 362 KVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 129
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=84.80 E-value=21 Score=32.50 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 87 RESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 87 RESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
-|+++|-....+.++.+++.-...=+..-.....+-..+.+++..+..||-.|+.++.....+...-..++.-+|
T Consensus 181 lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ 255 (305)
T PF14915_consen 181 LESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQ 255 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 567777777777777777766655555556666677888999999999999999999999998888776666555
No 130
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.80 E-value=13 Score=31.08 Aligned_cols=46 Identities=22% Similarity=0.261 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..+...|..-|.-|+.+++........|..|+..|..+...|+..|
T Consensus 73 qqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL 118 (182)
T PF15035_consen 73 QQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDEL 118 (182)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333333333333333333333333333
No 131
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=84.80 E-value=6.3 Score=27.16 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
.++.+.+|+.+++.++.+|..|..++..+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555555555555555555555444
No 132
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.80 E-value=3.8 Score=31.25 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
++..++..++++...+..+|..|+.++..|+..-..++.+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 3444444444444455556666666666665543444433
No 133
>PF10506 MCC-bdg_PDZ: PDZ domain of MCC-2 bdg protein for Usher syndrome; InterPro: IPR019536 The entry represents a protein that has a high homology to the tumour suppressor Usher syndrome type-1C protein-binding protein 1, or known as MCC2 (mutated in colon cancer). MCC2 protein binds the first PDZ domain of AIE-75 with its C-terminal amino acids -DTFL. A possible role of MCC2 as a tumour suppressor has been put forward. The carboxyl terminus of the predicted protein was DTFL which matched the consensus motif X-S/T-X-phi (phi: hydrophobic amino acid residue) for binding to the PDZ domain of AIE-75 [, ].
Probab=84.56 E-value=12 Score=26.70 Aligned_cols=56 Identities=21% Similarity=0.256 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.|..+++.|+..|..|...++..+.++..+.....+-.+....|+-++..-.+++.
T Consensus 2 rL~~~ie~L~~~n~~L~~~le~~k~~se~Ls~~lgk~es~~~alrlal~ys~r~~e 57 (67)
T PF10506_consen 2 RLKRRIEELKSQNEMLSSTLEERKQQSEELSMDLGKYESNATALRLALKYSERCKE 57 (67)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 47778889999999999999999999998888888877777777766655444433
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=84.37 E-value=8.1 Score=33.69 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
+-+-+|..++++|+.|..+|+.+++.+.+++..+......|-.++..
T Consensus 54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578888999999998888888888888777776666665555544
No 135
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=84.02 E-value=8.6 Score=31.43 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..+..++..|+.++..|+++|
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 136
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=83.95 E-value=7.6 Score=27.45 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
...+..++..+..+...+..||..|+.|...|..
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 26 TRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444455555555556666666666666666554
No 137
>PRK02119 hypothetical protein; Provisional
Probab=83.68 E-value=11 Score=27.08 Aligned_cols=48 Identities=8% Similarity=0.034 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
.++.+||.++..++.-...|...+..-...+..|..+-..|..++..+
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555555555555555555555555555555544443
No 138
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=83.46 E-value=7.8 Score=28.32 Aligned_cols=46 Identities=28% Similarity=0.355 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
....+...+..+++.+..+...+..||..|+.|...|.. ...++++
T Consensus 32 ~~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~-~~rIe~i 77 (97)
T PF04999_consen 32 YSRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSS-PSRIERI 77 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-HHHHHHH
Confidence 344556677777888888888889999999999887765 4444444
No 139
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.37 E-value=29 Score=31.17 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.+..+++.+|+.+...|..+-..|..+...+.+.-.....+...+..+...+......+...+...
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555555444555555555555555555555555444443
No 140
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=83.03 E-value=24 Score=37.04 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.+...++..|..+...++..+..|+.+..+++.
T Consensus 397 ~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~ 429 (1074)
T KOG0250|consen 397 EERENKLEQLKKEVEKLEEQINSLREELNEVKE 429 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444333
No 141
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.96 E-value=7.8 Score=33.93 Aligned_cols=41 Identities=17% Similarity=0.273 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
...++.+|+.|...+..++..|+.++ ..|++.+..|-.|+.
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev-------~~L~~DN~kLYEKiR 131 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREV-------ESLRADNVKLYEKIR 131 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 44555555555555555554444444 444444455555544
No 142
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.95 E-value=18 Score=38.01 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=52.6
Q ss_pred HHHhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRK------------QKHLENLRNQLNRLRMENRELSNRLRFALH---HCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 83 ~lsNRESARRSR~RK------------k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~---~~~~L~~EN~~Lrae~~~Lr 147 (185)
+.-+|-.|+....+. .+++++|+..+-.|+.||+.|..+|..|.. ....|+..|..|.....+++
T Consensus 502 ~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elk 581 (1195)
T KOG4643|consen 502 LELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELK 581 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHH
Confidence 455666666665543 378899999999999999999999999876 44456777777766666666
Q ss_pred HHHHHHH
Q 029952 148 RRLSEIR 154 (185)
Q Consensus 148 ~rL~~l~ 154 (185)
.-+..|.
T Consensus 582 k~idaL~ 588 (1195)
T KOG4643|consen 582 KYIDALN 588 (1195)
T ss_pred HHHHHHH
Confidence 6555554
No 143
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=82.80 E-value=12 Score=29.71 Aligned_cols=62 Identities=23% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 89 SARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 89 SARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
+..+-+.=-...+.+|+.++..|..+--.=..++..+-.+.+.|..++..|..-+..|..||
T Consensus 4 ~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 4 LLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444556677777777777666554455555555555555555555555555555554
No 144
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.50 E-value=21 Score=29.84 Aligned_cols=16 Identities=13% Similarity=0.297 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHT 144 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~ 144 (185)
+..|..++..|+.++.
T Consensus 112 l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 112 LEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 145
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=82.45 E-value=16 Score=26.33 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|+.-=......-+........|...+.....+|..|++++..|..++..|..-+.
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455556677777777788888888999999999999999988877654
No 146
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=82.26 E-value=6.2 Score=39.19 Aligned_cols=54 Identities=17% Similarity=0.203 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+|-.+|.+|.-|+.-|+.++...++.-..|+..+..|..|+..+++++...++
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~ 378 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQ 378 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889999999999999999998888888888888888888888887776644
No 147
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.12 E-value=29 Score=29.17 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..++.++..|+...-+|+.+...+.........|..+|++....|.+.+.+++.-+.
T Consensus 127 ~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~ 183 (190)
T PF05266_consen 127 KELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQ 183 (190)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777777777777888888898888888888888776544
No 148
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=82.09 E-value=11 Score=28.22 Aligned_cols=40 Identities=28% Similarity=0.323 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALH------HCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~------~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.+..+|..|..++..|+. .+.....||.+|+.++..|+.-
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f 66 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSF 66 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666665553 3445678888888888766653
No 149
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=81.86 E-value=19 Score=30.10 Aligned_cols=44 Identities=18% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|..|..-+..|++++......|..|..++..|+..+..+.+-|.
T Consensus 76 ~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~ 119 (182)
T PF15035_consen 76 SEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE 119 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444333
No 150
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=81.84 E-value=16 Score=33.07 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=49.5
Q ss_pred cchhHHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 72 VSVIDERKRRRMISNRESARRSRMR--KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 72 ~~~~deRk~RR~lsNRESARRSR~R--Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
....+||-++=|++| |+--=.| =.-+++-|..++..|+.....|..++......+..+......|+.+...|+..
T Consensus 86 l~evEekyrkAMv~n---aQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~ 162 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSN---AQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQ 162 (302)
T ss_pred HHHHHHHHHHHHHHH---hhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777778887 2221111 12345555566666666666666665555555555566666667777777777
Q ss_pred HHHHHHHHHH
Q 029952 150 LSEIRQILLY 159 (185)
Q Consensus 150 L~~l~~il~~ 159 (185)
|....++|.-
T Consensus 163 L~~rdeli~k 172 (302)
T PF09738_consen 163 LKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHH
Confidence 7666666643
No 151
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=81.80 E-value=6.3 Score=27.16 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
.+..++..+..+...+..+|..|+.++..|+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444445555555556666666666666663
No 152
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.51 E-value=15 Score=25.51 Aligned_cols=47 Identities=21% Similarity=0.376 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
++.|..+|..|..+...|...+ ..+..+-...+.|.+.--.||.++.
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv-------~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDV-------NALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4444444444444444444444 4444444455555555556665544
No 153
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=81.45 E-value=24 Score=28.54 Aligned_cols=63 Identities=25% Similarity=0.320 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
++++|-.+++.|+..-.....+++........|..|=+.|..|...|..=|..-..++..+|+
T Consensus 7 ~iE~LInrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~l~iLql 69 (134)
T PF15233_consen 7 QIEDLINRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQETLRILQL 69 (134)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666666666666666666666666666666666555555555444443
No 154
>PRK09039 hypothetical protein; Validated
Probab=81.43 E-value=27 Score=31.75 Aligned_cols=7 Identities=0% Similarity=0.619 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 029952 147 RRRLSEI 153 (185)
Q Consensus 147 r~rL~~l 153 (185)
+.++..+
T Consensus 171 ~~~i~~L 177 (343)
T PRK09039 171 QAKIADL 177 (343)
T ss_pred HHHHHHH
Confidence 3333333
No 155
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=81.42 E-value=6.8 Score=33.98 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
|+.+...+..+-..|..+++.....+..+..++..|+.+...+......+
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 44444444444445555555555555555555555555555554444333
No 156
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=81.40 E-value=28 Score=30.90 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAV 175 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~~~~~~~~~~~~ 175 (185)
+..-+-....+|+.+..++..-++....++.+...|++++..|+....+.+.++ |..+ +--..-|++-|
T Consensus 177 ~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i-F~dv--ll~rpKCTPDm 245 (258)
T PF15397_consen 177 MQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI-FADV--LLRRPKCTPDM 245 (258)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh-hHHH--hcCCCCCCCCc
Confidence 344566677899999999999999999999999999999999999998776654 2222 22334598854
No 157
>PRK02793 phi X174 lysis protein; Provisional
Probab=81.26 E-value=14 Score=26.38 Aligned_cols=48 Identities=15% Similarity=0.110 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
+++.+||.++..++.-...|...+..-..++..|..+=..|..++..+
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355666666666666666666665555555555555555555555443
No 158
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=81.21 E-value=19 Score=31.46 Aligned_cols=41 Identities=12% Similarity=0.051 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|..+|+.|+.++..|..+++++.-++..+.+|-.++.+-|.
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld 99 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQID 99 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444443333
No 159
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=81.13 E-value=9.8 Score=32.28 Aligned_cols=40 Identities=10% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++..|..+...+...|-.+...+..|+..+..+.+-..-.
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666655544433
No 160
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=81.10 E-value=19 Score=35.35 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
.++.+++|+.++..|..+...+..++..+...+..+..|....+.+..+|...+.-.
T Consensus 326 ~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 326 QEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665555555555555555555555555555555554444433
No 161
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=81.07 E-value=3.1 Score=32.98 Aligned_cols=28 Identities=39% Similarity=0.661 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
|..-+++|..++..|+.||..|+.++..
T Consensus 1 k~~t~EeLaaeL~kLqmENk~LKkkl~~ 28 (118)
T PF05812_consen 1 KDMTMEELAAELQKLQMENKALKKKLRQ 28 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4567899999999999999999998764
No 162
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=80.69 E-value=16 Score=28.89 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
....++......+..+..|+..|
T Consensus 116 ~~~~~~~~~e~~~~~~~~riaEl 138 (139)
T PF13935_consen 116 ELAEQAEAYEGEIADYAKRIAEL 138 (139)
T ss_pred HHhHHHHHHHHHHHHHHHHHHhc
Confidence 33444444555556666665544
No 163
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=80.57 E-value=2.1 Score=28.25 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 111 LRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 111 L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
|-..|..|..++..+...+..|..||..||+
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~ 42 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRE 42 (46)
T ss_dssp ------------------HHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443
No 164
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=80.55 E-value=0.27 Score=45.34 Aligned_cols=46 Identities=35% Similarity=0.440 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELS 119 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~ 119 (185)
..|+|++|=.++||.||-++|.|||.....|+.+...+..+|..|.
T Consensus 281 ~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 281 DPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 3466664448999999999999999999999999999999988876
No 165
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=80.49 E-value=21 Score=26.43 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=35.8
Q ss_pred HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 029952 85 SNRESARRSRMRKQ------KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT---DNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 85 sNRESARRSR~RKk------~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~---EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.|.+..+.+-.+|. ..+.+|..+...+..+-..|+.+-..+..++..+.. +-..|+++...|+.++..+..
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555442 334444455555555555555554444444444333 234455555555555555544
Q ss_pred HHHH
Q 029952 156 ILLY 159 (185)
Q Consensus 156 il~~ 159 (185)
.+.-
T Consensus 89 ~~~~ 92 (108)
T PF02403_consen 89 QLKE 92 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 166
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=80.49 E-value=38 Score=37.86 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
...+.|+..+..|-.++.+|+..|..+..
T Consensus 1512 k~v~elek~~r~le~e~~elQ~aLeElE~ 1540 (1930)
T KOG0161|consen 1512 KRVHELEKEKRRLEQEKEELQAALEELEA 1540 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544
No 167
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=80.23 E-value=18 Score=25.44 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
++...+..|..+..++.. .+..|..|..++..|+.++..+
T Consensus 19 EL~kvk~~n~~~e~kLqe-------aE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 19 ELTKVKSANLAFESKLQE-------AEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555544 4444555555555555544443
No 168
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=80.05 E-value=27 Score=30.28 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+..++.++..++..++.|..++..+...|..|...+.+|..++.
T Consensus 211 ~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~ 254 (312)
T PF00038_consen 211 LESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLD 254 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHH
Confidence 44444555555555555555555555555555555554444433
No 169
>PRK00295 hypothetical protein; Provisional
Probab=79.87 E-value=19 Score=25.48 Aligned_cols=51 Identities=6% Similarity=-0.008 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
++.++.+|+.....+...++ .|-..=.....++..|+.+|..|.+-|.-+.
T Consensus 3 ~e~Ri~~LE~kla~qE~tie-------~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQ-------ALNDVLVEQQRVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666555544443332 2222333334555777777777777666654
No 170
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=79.76 E-value=10 Score=31.83 Aligned_cols=50 Identities=24% Similarity=0.274 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
-+.=.|.|+..|+.+|+.|+.+++.|.. ...+|..+-.....|.-+|-..
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~----~Ar~Ne~~~~~~~~l~l~LL~a 90 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIE----NARENEAIFQRLHRLVLALLAA 90 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHC-
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcC
Confidence 3455667888888888888888876655 3468888888888777766443
No 171
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.69 E-value=25 Score=36.99 Aligned_cols=61 Identities=20% Similarity=0.377 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMEN-RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN-~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
++..++.|+.++..++.+- ..+..++.....++..|..|+..|..++..|+..+..+..-+
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566665555544 556666666666666666666666666666666666555433
No 172
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=79.68 E-value=2.3 Score=28.06 Aligned_cols=38 Identities=26% Similarity=0.301 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.+|.+|......+.-++..++.+...|..|...||.++
T Consensus 7 ~qn~~laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 7 RQNRELAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp -----------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 45666666666677777777777777777777776654
No 173
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=79.63 E-value=57 Score=30.97 Aligned_cols=72 Identities=14% Similarity=0.175 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 85 SNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 85 sNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
+++...++--.++...+.+-..+...|+.+...+..++..+..++.....++..++..+..+..+|..+...
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555555555555555666666666666666666666666666666666666666666666555443
No 174
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=79.47 E-value=55 Score=32.39 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRM------------------------ENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~------------------------eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
.++.++.+|+.++..++. +|..|+.++..|...+..|..+|
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777766555543 46677777777777777777776
No 175
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=79.34 E-value=17 Score=32.90 Aligned_cols=54 Identities=26% Similarity=0.331 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+|..|+.....|...+..+...+.....+=.+++.....|+..+..|...|..+
T Consensus 113 qvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 113 QVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444555666666777777777666655
No 176
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.12 E-value=21 Score=32.11 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+.++...+.+-..+..++..|..++.....|...|..++.....||.....++
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li 286 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLI 286 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHH
Confidence 333444444444444444444445555555555555555555555555555544
No 177
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=78.93 E-value=15 Score=31.87 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
+.++.|+.....+..+.....+....+..|-..|+.++.+++..
T Consensus 60 ~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 60 QDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444445555555555555444
No 178
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=78.78 E-value=13 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~ 123 (185)
.+.+|..|+.+|..|..++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e 66 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENE 66 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 179
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=78.77 E-value=33 Score=32.45 Aligned_cols=61 Identities=13% Similarity=0.257 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
++.++..+-..-+..|+.|-..|..++.+-.++....+.+...|..++.+=+.|-+.+.-.
T Consensus 129 ~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHeqis~m 189 (561)
T KOG1103|consen 129 AHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHEQISLM 189 (561)
T ss_pred HHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444567789999999999999999988888999999988888777776655443
No 180
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=78.73 E-value=41 Score=28.77 Aligned_cols=81 Identities=14% Similarity=0.192 Sum_probs=43.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
++..-.+-..|.-..-+.+...|...+...+.+-+... ..-+....|-..|..+....+.+|..|...+...+
T Consensus 109 ~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va-------~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq 181 (192)
T PF11180_consen 109 QLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVA-------ARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQ 181 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443333 33444555666666666777777777777777776
Q ss_pred hhccCCCC
Q 029952 162 LQQVTSAW 169 (185)
Q Consensus 162 ~~~~~~~~ 169 (185)
.+.....|
T Consensus 182 ~q~~~~~~ 189 (192)
T PF11180_consen 182 RQANEPIP 189 (192)
T ss_pred HHhcCCCC
Confidence 66655444
No 181
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=78.66 E-value=39 Score=32.54 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=41.5
Q ss_pred HHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKH----LENLRNQLNRLRMENRELSNRLRFALHHCQR----VRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~----l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~----L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
-..+|=++++.+=.||.++ ++.++.+...++.+|..|.........++.. +...+.....++..|..+|.+|
T Consensus 368 ~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 368 QESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445566666666666543 4456666666666676666655444444333 2334444445555566555555
Q ss_pred HHHHH
Q 029952 154 RQILL 158 (185)
Q Consensus 154 ~~il~ 158 (185)
.-.|.
T Consensus 448 mf~le 452 (493)
T KOG0804|consen 448 MFFLE 452 (493)
T ss_pred heehh
Confidence 44443
No 182
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=78.58 E-value=12 Score=35.85 Aligned_cols=59 Identities=8% Similarity=0.180 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
-+..+.+-+.++++|+++-..|+.+++.+..+...++..=+.|.+|+..|+.+++.+..
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44556788888888888888888877777776666666666777777777776644333
No 183
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=78.21 E-value=10 Score=37.60 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.+..+|+.++..|+.++..|..++..+..
T Consensus 436 ~e~~~L~~~~ee~k~eie~L~~~l~~~~r 464 (652)
T COG2433 436 EENSELKRELEELKREIEKLESELERFRR 464 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554443
No 184
>PRK04325 hypothetical protein; Provisional
Probab=78.18 E-value=22 Score=25.51 Aligned_cols=53 Identities=9% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+..++.++..|+.....+...+ ..|-..=.....++..|+.+|..|..-|.-+
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tI-------e~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~ 56 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLI-------DGLNATVARQQQTLDLLQAQLRLLYQQMRDA 56 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666655444443332 2222222222334466677776666655443
No 185
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=78.16 E-value=27 Score=28.32 Aligned_cols=59 Identities=14% Similarity=0.286 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..+++....++.|...-.....+-..+...|..|..|..+|..-...+..+|.-+..+=
T Consensus 21 ~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld 79 (157)
T PF04136_consen 21 DQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELD 79 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHH
Confidence 34455555666666666666666777777788888888888887888888777766553
No 186
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=78.11 E-value=43 Score=28.70 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=33.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQK----HLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~----~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
||.||-...+.++=.-+-+=.+ ++...-.++..|+..|++|...++.|+.-|..|
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFL 81 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFL 81 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4567777776666544433322 333344566777777888777777777655544
No 187
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=77.93 E-value=1.3 Score=33.54 Aligned_cols=43 Identities=26% Similarity=0.455 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
.||+.|...+..|..+|..|..++..|..++..+...+..|+.
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~ 67 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQR 67 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 5778888888888888888877777666665555544444443
No 188
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.89 E-value=24 Score=34.74 Aligned_cols=47 Identities=9% Similarity=0.352 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
++.=|..++..++.+...+..+...+...+.|+..|+.+...|+..+
T Consensus 278 ~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 278 FQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555555555555555554433
No 189
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.71 E-value=27 Score=31.91 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
..-+.+.+.+|..|..++..|++.+..+..+|..||..++
T Consensus 71 a~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la 110 (319)
T PF09789_consen 71 AQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLA 110 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3334444444444444444444444444444444444333
No 190
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=77.70 E-value=3.8 Score=28.84 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+++.|++++..|+..|..|..|+..|++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk~ 42 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLKQ 42 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 191
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=77.68 E-value=10 Score=34.89 Aligned_cols=51 Identities=14% Similarity=0.249 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|++|+.+|++|..++..-.++..-|+.-|++=-.|+..|.+-+..|+..+.
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiL 52 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAIL 52 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888888877654
No 192
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=77.44 E-value=27 Score=25.99 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=58.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
-++...++.....=..|...+..|+.++..|..+-..-..+.-.+......+..||..|+..+..=..-+..|.+
T Consensus 6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456666777777778899999999999999999999988888888888889999998888776654444444433
No 193
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=77.34 E-value=41 Score=28.61 Aligned_cols=42 Identities=17% Similarity=0.328 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
-...+..||..|...+..+...+..|...+..|..+...|..
T Consensus 157 ~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 157 FTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555555554444
No 194
>PHA03162 hypothetical protein; Provisional
Probab=77.30 E-value=1.8 Score=34.96 Aligned_cols=27 Identities=26% Similarity=0.636 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l 122 (185)
+++.-+++|..++..|+.||..|+.++
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKI 36 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 466779999999999999999999998
No 195
>PRK04406 hypothetical protein; Provisional
Probab=77.29 E-value=24 Score=25.52 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
++.+||.++..++.-...|...+..-..++..|..+=..|
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L 51 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433333334443333333
No 196
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=77.10 E-value=30 Score=31.55 Aligned_cols=29 Identities=14% Similarity=0.311 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 115 NRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
...|..++-.+..++..+..||..|...+
T Consensus 236 It~LlsqivdlQ~r~k~~~~EnEeL~q~L 264 (306)
T PF04849_consen 236 ITSLLSQIVDLQQRCKQLAAENEELQQHL 264 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33344455555555555555555554443
No 197
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.89 E-value=11 Score=25.00 Aligned_cols=28 Identities=29% Similarity=0.359 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.+..+...+..|..+|..|+.++..|..
T Consensus 26 ~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 26 REEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555666666677777666666653
No 198
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.41 E-value=40 Score=30.53 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 136 NDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 136 N~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
...|-..+..|+....+|+|-|++++-|
T Consensus 159 ke~llesvqRLkdEardlrqelavr~kq 186 (333)
T KOG1853|consen 159 KEVLLESVQRLKDEARDLRQELAVRTKQ 186 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445556666888888888888888765
No 199
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=76.30 E-value=15 Score=27.89 Aligned_cols=56 Identities=23% Similarity=0.335 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+.+.+++.+--.+...|++|..++..+..+...-.. +..++.++..+...+..-.+
T Consensus 17 ~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r~ 72 (106)
T PF05837_consen 17 EKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSRQ 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666665555544433222 33444444444444444433
No 200
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=76.28 E-value=34 Score=29.99 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 87 RESARRSRMRKQKHLE----NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 87 RESARRSR~RKk~~l~----eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
=+|+-..-+||.-+.+ .++.+++.|+.++..|...+..++.++..-+.-|..+
T Consensus 169 yeSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~ 225 (259)
T KOG4001|consen 169 YESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEE 225 (259)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4778888889876554 4678899999999999999998888777655444433
No 201
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=76.19 E-value=37 Score=29.19 Aligned_cols=27 Identities=33% Similarity=0.401 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
.-....+|..+.+.|+.||.+|+.++.
T Consensus 67 ~~~~~~~l~~en~~L~~e~~~l~~~~~ 93 (276)
T PRK13922 67 SLASLFDLREENEELKKELLELESRLQ 93 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666655543
No 202
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.19 E-value=44 Score=27.84 Aligned_cols=58 Identities=14% Similarity=0.295 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQR-VRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~-L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
...+..|+.+...|+.+-..|..+.+.+...... ...++.....|+..|+..-..|..
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666555543 344455555555555554444433
No 203
>PRK00736 hypothetical protein; Provisional
Probab=75.90 E-value=25 Score=24.83 Aligned_cols=50 Identities=12% Similarity=0.150 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++.++..|+.....+...++.|.. .=..-..++..|+.+|..|.+-|.-+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~-------~v~~Qq~~i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSD-------QLAEQWKTVEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666665555544443332 22233445577777777777766554
No 204
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=75.77 E-value=22 Score=30.03 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+.-..++..|..++..|+.++..-++||++|++|=..
T Consensus 126 qssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQ 162 (179)
T PF13942_consen 126 QSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQ 162 (179)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3344577788889999999999999999999998543
No 205
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=75.67 E-value=53 Score=28.46 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
...|+.+......+...|..++..+......|..+...-..+...|+.+|.....-+..
T Consensus 63 ~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 63 KQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455556666666777777777777777777777777888877777765554
No 206
>PRK14127 cell division protein GpsB; Provisional
Probab=75.57 E-value=10 Score=29.52 Aligned_cols=27 Identities=15% Similarity=0.391 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+..+..||..|+.++..|+.+|..+..
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444
No 207
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.56 E-value=76 Score=34.62 Aligned_cols=18 Identities=6% Similarity=-0.057 Sum_probs=9.8
Q ss_pred HHHHHHhHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRK 97 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RK 97 (185)
.+.+.+.++.|++.+.-+
T Consensus 323 L~kLEkQaEkA~kyleL~ 340 (1486)
T PRK04863 323 ESDLEQDYQAASDHLNLV 340 (1486)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555666666655443
No 208
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.18 E-value=13 Score=27.47 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRM-----ENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~-----eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
..+..||.++..--. .++.|..++..++.+...+..+|..|+.++.
T Consensus 49 ~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~ 99 (100)
T PF01486_consen 49 KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555554443222 3444666666666666667777766665543
No 209
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.10 E-value=37 Score=30.63 Aligned_cols=58 Identities=17% Similarity=0.228 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
++..+..++..+..++...+..+..++.++..+...=.....+..++...+..++.++
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444555555554444444444444444444444444433
No 210
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=74.87 E-value=25 Score=34.47 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.+.+++.++..+-..+..+++....+......||..|.+++..|..++.
T Consensus 202 ~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k 250 (596)
T KOG4360|consen 202 DCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIK 250 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3333333333333334444444444444444444444444444444433
No 211
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=74.83 E-value=44 Score=27.12 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
++.+-.|.++-..|+..-=....++..+.+ -+.|+.+|..|..|+..|+..+..+..=+.
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~Q-k~eLE~~k~~L~qqv~~L~~e~s~~~~E~d 105 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQQ-KHELEKEKAELQQQVEKLKEENSRLRRELD 105 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554433334444554443 346777777777777766666666554443
No 212
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.77 E-value=56 Score=28.34 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT 134 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~ 134 (185)
....+|.+++.+.+.|..|-.....+|..+.+.+..|+.
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~ 67 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888777777777776666655555543
No 213
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=74.71 E-value=3.6 Score=36.91 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
..|.++|.+|+.|+.-|..|..++..-...|..+..--.++|+++..+..||.-|..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE 273 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEE 273 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccH
Confidence 457789999999999999999999887777777766666899999999999887754
No 214
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=74.67 E-value=54 Score=28.07 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
.-..++..+..-+..-..|...+.....+-..+...-...+.|...|..+-......|...|-
T Consensus 113 Qka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~ 175 (192)
T PF11180_consen 113 QKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQR 175 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555566666666666666777777777777777777777777766665543
No 215
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=74.66 E-value=10 Score=34.65 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELS 119 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~ 119 (185)
.|.-|..=|.-++.|+.+...|+.....+.
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~ 50 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELI 50 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344334444555555455544444433
No 216
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=74.44 E-value=33 Score=31.50 Aligned_cols=38 Identities=16% Similarity=0.241 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
..|..++..|..+|..|..++..+..++..+..+-..+
T Consensus 140 ~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~ 177 (342)
T PF06632_consen 140 SRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEH 177 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555554444333
No 217
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=74.42 E-value=75 Score=30.42 Aligned_cols=27 Identities=30% Similarity=0.359 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
++++.+.|.+++.|+.||..|..+.-.
T Consensus 47 ~a~~~~~E~~l~~Lq~e~~~l~e~~v~ 73 (459)
T KOG0288|consen 47 KAKLQEKELELNRLQEENTQLNEERVR 73 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888887776544
No 218
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.32 E-value=31 Score=25.18 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
++.+||.+++.-+.- |+.|...+......=.+++.++..|..|+.++
T Consensus 9 Ri~eLE~r~AfQE~t-------ieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~ 55 (72)
T COG2900 9 RIIELEIRLAFQEQT-------IEELNDALAEQQLVIDKLQAQLRLLTEKLKDL 55 (72)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555544433 33344434333444445555666666665554
No 219
>PRK10963 hypothetical protein; Provisional
Probab=74.13 E-value=14 Score=31.29 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
|.|+..|+.+|..|..++..|.. ...+|..+-.....|.-+|
T Consensus 43 ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~L 84 (223)
T PRK10963 43 EWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRL 84 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555543333 2346666666555555544
No 220
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=73.82 E-value=37 Score=33.05 Aligned_cols=63 Identities=11% Similarity=0.083 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFA-------LHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L-------~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++.++.||.++..|+.+-.+|..++..- ......+..|=..++.++.++..++..+...|.-.
T Consensus 562 ~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~~~~~~ 631 (638)
T PRK10636 562 RKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQEQLEQM 631 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888888888888888877432 11466677778888888999999999888877544
No 221
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=73.52 E-value=21 Score=27.89 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.|+.--..|..++..++++...|..||+.|-.=+..|..
T Consensus 67 ELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 67 ELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 333334445566666666667777788777766666654
No 222
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.39 E-value=25 Score=35.45 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.+.|+.+...|+.+..+++.+=..+...|..|+.||-.|..++..|++
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555566666666655555554443
No 223
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.29 E-value=20 Score=30.76 Aligned_cols=60 Identities=35% Similarity=0.406 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFAL-----------------------HHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~-----------------------~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.|++...+-|..++..|+.+...|+..+..+. .....|..+-.+|++++..++++..
T Consensus 76 qr~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e 155 (202)
T PF06818_consen 76 QRKKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRRE 155 (202)
T ss_pred HHHhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHH
Confidence 34555566677777777778888777777651 1233455566677777776666665
Q ss_pred HHH
Q 029952 152 EIR 154 (185)
Q Consensus 152 ~l~ 154 (185)
...
T Consensus 156 ~q~ 158 (202)
T PF06818_consen 156 EQR 158 (202)
T ss_pred HHH
Confidence 443
No 224
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=73.18 E-value=45 Score=26.53 Aligned_cols=50 Identities=8% Similarity=0.218 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
++++.|..++++...-....+.++..+......+..+=..+..-...|..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333333333333333333
No 225
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=73.15 E-value=31 Score=24.68 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+.+=..++++|..|-..|....-.+...+..|...|..+..++..|+.++..+..-+.-.
T Consensus 7 l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 7 LAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556788888888888888777777888888888888888888888887777655443
No 226
>PHA03011 hypothetical protein; Provisional
Probab=72.98 E-value=33 Score=26.94 Aligned_cols=55 Identities=22% Similarity=0.174 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
+..+++|..+-+.|-.|-+-+..++..+..-.+.-..|=.-|++|...|+..+..
T Consensus 63 ~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn~d~I~~LraeIDkLK~niaN 117 (120)
T PHA03011 63 IEILDELIAQYNELLDEYNLIENEIKDLEIIIQDNDDEIHFLRAEIDKLKENIAN 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhc
Confidence 3567777778888877777777777766665555555556677777777766544
No 227
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=72.91 E-value=29 Score=38.42 Aligned_cols=69 Identities=17% Similarity=0.265 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
=|..+.+.-..+.+|..+++.|+.+-..|...+..+..++....+++..|+.+....+.|..+|..-+.
T Consensus 1234 LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k 1302 (1822)
T KOG4674|consen 1234 LREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYK 1302 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566677788888888888888888888888888888888888888888888888888888776543
No 228
>PRK02224 chromosome segregation protein; Provisional
Probab=72.90 E-value=72 Score=31.76 Aligned_cols=40 Identities=25% Similarity=0.371 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----hh---ccCCCCCCCcccc
Q 029952 137 DRLRSEHTILRRRLSEIRQILLYRQ-----LQ---QVTSAWPCNSAVT 176 (185)
Q Consensus 137 ~~Lrae~~~Lr~rL~~l~~il~~~~-----~~---~~~~~~~~~~~~~ 176 (185)
..|..++..|+.++..+...+.+.. .. .-..-|-|..-+.
T Consensus 415 ~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~~~ 462 (880)
T PRK02224 415 EELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVE 462 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcCC
Confidence 4444445555555445444444332 11 2335577876443
No 229
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=72.23 E-value=5.3 Score=37.08 Aligned_cols=31 Identities=19% Similarity=0.119 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
+.-.|+.+-..|++||.+|+.++..|+....
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445666666666666666666666655444
No 230
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=72.21 E-value=87 Score=35.19 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..++.+...+..++..|...+..+...|..|-.+...|..++..+...|
T Consensus 953 ~k~~~Ek~~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l 1001 (1930)
T KOG0161|consen 953 QKLELEKNAAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDL 1001 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444444444444333
No 231
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.13 E-value=27 Score=34.34 Aligned_cols=47 Identities=23% Similarity=0.367 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
+..+++|..++..+..+...|...+..+..+......++..|..++.
T Consensus 334 ~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 334 QEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888888888888878777777777777766
No 232
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=71.97 E-value=44 Score=25.87 Aligned_cols=58 Identities=19% Similarity=0.280 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.-|..=|-+-+..+..|...+..-...+..++.||+.|.=.+..|..|+..|..-|..
T Consensus 15 ~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~ 72 (102)
T PF10205_consen 15 QVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEE 72 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566667777777767777777778888877778888888877777663
No 233
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.71 E-value=92 Score=33.07 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 85 SNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRL---RFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 85 sNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l---~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+..+..+..+.+++..+..|+.++..+..+...+...+ ..+..++..+..++..|+.++..+...+..+..-+
T Consensus 843 ~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 843 SKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 44455566666667777777666666655555544433 23444555555555555555555555555554433
No 234
>PRK10722 hypothetical protein; Provisional
Probab=71.68 E-value=17 Score=32.15 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 126 LHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 126 ~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..++..+..++..|+.++..+.+||++|++|=..
T Consensus 175 D~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERq 208 (247)
T PRK10722 175 DSELDALRQQQQRLQYQLELTTRKLENLTDIERQ 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888889999999999999998543
No 235
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=71.62 E-value=20 Score=27.49 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.|...+..|..++..+..++..+...+..+..++..|+.
T Consensus 77 ~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 77 YLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444443
No 236
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.60 E-value=12 Score=28.63 Aligned_cols=18 Identities=11% Similarity=0.182 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~ 145 (185)
..+.++..|..|..++.+
T Consensus 45 e~~~~e~k~~~le~~l~e 62 (100)
T PF06428_consen 45 ERAALEEKNEQLEKQLKE 62 (100)
T ss_dssp HHHHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444455555444444
No 237
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=71.59 E-value=20 Score=24.88 Aligned_cols=28 Identities=18% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..++..++.++.+|+.++..++.+.+..
T Consensus 10 ~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 10 PRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555444433
No 238
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.54 E-value=38 Score=25.00 Aligned_cols=56 Identities=23% Similarity=0.333 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALH---HCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~---~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+++.|+.+-..+..+++.+.. ....+..+-..|+.++..|...+..+..-+...
T Consensus 42 ~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 42 QQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433 355566666666677777776666666655443
No 239
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.53 E-value=1e+02 Score=32.12 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
++-.|++....|..+|+.|+.-+
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~ 453 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKL 453 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555544443
No 240
>PHA03155 hypothetical protein; Provisional
Probab=71.27 E-value=5.9 Score=31.30 Aligned_cols=26 Identities=31% Similarity=0.599 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
.-+++|+.++..|+.||..|+.++..
T Consensus 8 ~tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 8 ADVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45799999999999999999998854
No 241
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=71.22 E-value=59 Score=34.23 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
......++..|+.+.+.+..++..+.+.+......|..|+.+...|..+|.....-|..
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~ 501 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELES 501 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666666666666666666666666666666666666655555443
No 242
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=71.19 E-value=23 Score=31.71 Aligned_cols=64 Identities=17% Similarity=0.331 Sum_probs=37.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.-++|+|..=...+++++.+. .++..|+.... -..++..|++++..+++||....+++..++++
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~---d~I~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~ 194 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQ---DEIAKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ 194 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHH---HHHHHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH
Confidence 457888876554444444332 33344443322 13456777888888888887777777666543
No 243
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.18 E-value=54 Score=26.58 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRM 113 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~ 113 (185)
..|.+...++..|+.
T Consensus 34 ~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 34 TQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHh
Confidence 334444444444443
No 244
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=71.11 E-value=48 Score=25.90 Aligned_cols=49 Identities=27% Similarity=0.307 Sum_probs=21.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
+..|+.-|.+.=. ++..++++..++..+-.+-..|..+...+..++..+
T Consensus 40 ~~~n~~lAe~nL~-~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l 88 (150)
T PF07200_consen 40 LAENEELAEQNLS-LEPELEELRSQLQELYEELKELESEYQEKEQQQDEL 88 (150)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345554443322 234444455555544444444444444444444443
No 245
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=71.05 E-value=54 Score=26.52 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 125 ALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 125 L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
|...+..+..|+..|..++...+.++..|
T Consensus 71 L~~EL~~l~sEk~~L~k~lq~~q~kv~eL 99 (140)
T PF10473_consen 71 LELELDTLRSEKENLDKELQKKQEKVSEL 99 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333334444433
No 246
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=70.90 E-value=69 Score=27.70 Aligned_cols=27 Identities=30% Similarity=0.465 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
.+..|+.++..|+..|..|...+..+.
T Consensus 224 ~~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 224 QIQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhccccchhhhhhhHHHHH
Confidence 334444444444444444444444333
No 247
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=70.73 E-value=64 Score=32.65 Aligned_cols=49 Identities=20% Similarity=0.326 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALH---HCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~---~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
....|+.||-.|...+..|+. .+..+..|+.+|..|+..|+..|..+..
T Consensus 98 dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r 149 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR 149 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666654 4555666666666666666666655443
No 248
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=70.73 E-value=73 Score=33.17 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 89 SARRSRMRKQKHLENLRNQLNRLRMEN 115 (185)
Q Consensus 89 SARRSR~RKk~~l~eLe~qV~~L~~eN 115 (185)
+|+.+.....+...+|..++..+..+-
T Consensus 456 ~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 456 SAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 249
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=70.71 E-value=71 Score=27.71 Aligned_cols=70 Identities=16% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH------HH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMEN---REL------SN---RLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN---~~L------~~---~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
|.||+...-.+-|+-|.-=+.=.++|..-|-.-+... .+| .. -++.|..+...-+.|-..|+.+...|
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L~k~vtAL 138 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTLRKDVTAL 138 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566655555545444444444455554443322111 011 11 13344444445555666666666665
Q ss_pred HH
Q 029952 147 RR 148 (185)
Q Consensus 147 r~ 148 (185)
+-
T Consensus 139 ~i 140 (229)
T KOG1319|consen 139 KI 140 (229)
T ss_pred HH
Confidence 54
No 250
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=70.64 E-value=1e+02 Score=29.54 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
.+-+.|..++..|..+...|.++-+.|.++.
T Consensus 144 ~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~ 174 (499)
T COG4372 144 KQAQDLQTRLKTLAEQRRQLEAQAQSLQASQ 174 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 251
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=70.60 E-value=65 Score=27.72 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 87 RESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 87 RESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
=|.+.+.|....+.-++|+.+.+.|+.+-..|+.++..+++.--.+
T Consensus 104 ~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k~~e~dpqv 149 (203)
T KOG3433|consen 104 IENRKAGREETEERTDELTKKLNSLKKILESLRWELAKIQETDPQV 149 (203)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 3444555555555556666666666665555555555554433333
No 252
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=70.46 E-value=45 Score=25.31 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 144 TILRRRLSEIRQILLYR 160 (185)
Q Consensus 144 ~~Lr~rL~~l~~il~~~ 160 (185)
..-+++..-+..|+..+
T Consensus 68 k~~r~~~~v~k~v~q~l 84 (106)
T PF05837_consen 68 KKSRQRWRVMKNVFQAL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 253
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=70.24 E-value=94 Score=28.98 Aligned_cols=33 Identities=21% Similarity=0.216 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
.+..+-..|+.++.+|..++..+..-+...-+.
T Consensus 70 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 70 ALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555666666666666666666655554333
No 254
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=59 Score=33.64 Aligned_cols=56 Identities=20% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
-+--+.+-...++.|.+.+..|+.+|.+|..+++.......++..++.-|+.++..
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~ 717 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGI 717 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33344445556666666666677777776666666666666666666666555553
No 255
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=70.10 E-value=8.7 Score=28.80 Aligned_cols=29 Identities=31% Similarity=0.436 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
|+.+++.|...++.++.+|..|..++..+
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~ 106 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQ 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46666777777777777777776666543
No 256
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=70.03 E-value=77 Score=27.86 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
+..|..++..++..-..|..++..+....
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~ 119 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEI 119 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333333333333333333333333
No 257
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=69.92 E-value=47 Score=30.88 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
...-..|..++.+|..++..|..-+..
T Consensus 381 ~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 381 KEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444444433
No 258
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=69.59 E-value=55 Score=26.02 Aligned_cols=55 Identities=13% Similarity=0.236 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH-TILRRRLSEIRQILL 158 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~-~~Lr~rL~~l~~il~ 158 (185)
|+.++..|..........+..+...+..|...+..|+.+. ..++..+.+|--+|.
T Consensus 39 l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~ 94 (136)
T PF04871_consen 39 LEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLG 94 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 3333444444333333344455555555666666666554 455555555544443
No 259
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=69.22 E-value=49 Score=25.32 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
|...+..+.+++..+..++..|+..+..+..++..
T Consensus 78 L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~ 112 (118)
T PF13815_consen 78 LSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKK 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444433
No 260
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=69.20 E-value=57 Score=26.64 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 114 ENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 114 eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
++..+..+++.+++++...+.|...|+.+...|
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555554454444444
No 261
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=69.03 E-value=83 Score=30.13 Aligned_cols=42 Identities=29% Similarity=0.391 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
.+..|...|+.+-..+...++...-.+..|..||.+|..+..
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555554443
No 262
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=68.85 E-value=24 Score=24.85 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
.....+..++.++..++.+|..|..++..+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~ 58 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELS 58 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4556777888888888888888888777654
No 263
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=68.68 E-value=11 Score=34.70 Aligned_cols=16 Identities=31% Similarity=0.333 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFA 125 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L 125 (185)
.|..||++|+.++..|
T Consensus 61 ~L~~EN~~Lk~Ena~L 76 (337)
T PRK14872 61 VLETENFLLKERIALL 76 (337)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 264
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=68.37 E-value=1.5e+02 Score=31.21 Aligned_cols=29 Identities=21% Similarity=0.321 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 125 ALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 125 L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+..++..+..+-..|..+...|..++..+
T Consensus 735 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 763 (1163)
T COG1196 735 LQSRLEELEEELEELEEELEELQERLEEL 763 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 265
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=68.22 E-value=88 Score=28.49 Aligned_cols=80 Identities=14% Similarity=0.270 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLR-------NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe-------~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
|..-++.+-+--++-|.-|+-+|+.|| ++|+.-+.+...|..++..|.+.|..|+.-+..|--++..=...+.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Q ss_pred HHHHHHH
Q 029952 152 EIRQILL 158 (185)
Q Consensus 152 ~l~~il~ 158 (185)
.++-.|.
T Consensus 99 ~lEgQl~ 105 (307)
T PF10481_consen 99 FLEGQLN 105 (307)
T ss_pred HHHHHHH
No 266
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.18 E-value=90 Score=29.12 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD---NDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~E---N~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..+-.|..+...|..+-..|+.+...+..++..+... -..|+++..+|+.++..+...+....-+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 95 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAE 95 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666665555543222 2357778888888888888777766443
No 267
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.17 E-value=43 Score=32.31 Aligned_cols=45 Identities=18% Similarity=0.345 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 112 RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 112 ~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
+..-.++..++..+..+...+..+|..|+.....++.+|..+.+.
T Consensus 381 e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~ 425 (493)
T KOG0804|consen 381 ERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEER 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333444555556666666667777777777666666666555443
No 268
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=68.09 E-value=73 Score=26.89 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..|+.-|+.|+.+|.+.+.-.++....|............-...-+.++..|+.-|.....-+..
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~ 127 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLAN 127 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999988888887777776666666555555555666665555555544443
No 269
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=68.01 E-value=50 Score=24.90 Aligned_cols=41 Identities=7% Similarity=0.218 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENR-ELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 103 eLe~qV~~L~~eN~-~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
.=+.+|..|..-.. ....++..|..+...+..||..|+.++
T Consensus 31 KHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l 72 (87)
T PF12709_consen 31 KHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKL 72 (87)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666653221 233344444444444444444444333
No 270
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=67.82 E-value=47 Score=24.51 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.+|..++..-+.|...|..-++.|+.++.....-|..|..+...++..
T Consensus 8 k~L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~~~~~ 55 (76)
T PF11544_consen 8 KELKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLNLQRS 55 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455566666666666666666666666666666666666666666554
No 271
>PF14645 Chibby: Chibby family
Probab=67.59 E-value=30 Score=27.01 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
..|..+..+|+.||.-|+-+++.|..-+....+|-..+
T Consensus 74 ~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ 111 (116)
T PF14645_consen 74 QRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLL 111 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666665555544444333
No 272
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=67.13 E-value=58 Score=25.39 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l 122 (185)
.++...+..+..+|..|...+
T Consensus 30 ~~~~~~~~~l~~~n~~lAe~n 50 (150)
T PF07200_consen 30 QELQQEREELLAENEELAEQN 50 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444333
No 273
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=66.82 E-value=16 Score=35.07 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+.|..+|..|..+|..|+.+++.++-.|..+..||.-|+.-..++..|..
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~Asv~IQarae 95 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLLASVEIQARAE 95 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhhhhhHHhhccc
Confidence 56778888899999999999999999999999999999888888888877
No 274
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.73 E-value=95 Score=31.25 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
..+.+|+.+.+.|+..-..|..+++.+.+
T Consensus 579 ~~L~~l~e~~~~l~~~ae~LaeR~e~a~d 607 (717)
T PF10168_consen 579 KELQELQEERKSLRESAEKLAERYEEAKD 607 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555554444444444444433
No 275
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=66.66 E-value=30 Score=29.76 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.||..|+.++..+.+.+..|..||..|+.- ...+..|..+|..
T Consensus 125 ~ENe~Lh~~ie~~~eEi~~lk~en~~L~el----ae~~~~la~~ie~ 167 (200)
T PF07412_consen 125 EENEKLHKEIEQKDEEIAKLKEENEELKEL----AEHVQYLAEVIER 167 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 578889999988888888888888777653 3444444444443
No 276
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=66.64 E-value=47 Score=30.55 Aligned_cols=57 Identities=21% Similarity=0.363 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+|++.|+.+++.|+.+-.+|..++.... .....-..|..++..+..++..+.+++..
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~----k~~~k~~~~~~q~~~~~k~~~~~~~~~~~ 298 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNP----KKKNKLKELEEQLASLEKRIEEAEELIAE 298 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-T----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCc----chhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777777776654333 22333344666677777777777776554
No 277
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=66.53 E-value=55 Score=24.84 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.+.+...+...+..|..|...+..-+.........+..++.+..+.+.
T Consensus 34 n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e 81 (110)
T PF10828_consen 34 NKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRE 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777778888887777777777777777777777665544
No 278
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=66.41 E-value=54 Score=29.82 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=30.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 84 ISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 84 lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
+=|.|+-+.+ -+..++.|..||..|+..|..++.++...++.+..|
T Consensus 66 ~y~~e~e~~s---y~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~egl 111 (389)
T PF06216_consen 66 IYNKEFERQS---YSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGL 111 (389)
T ss_pred HHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455555444 345667777777777777777777777766666655
No 279
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=66.37 E-value=66 Score=26.51 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=42.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
++..+++++.|-.|+-.=++|-....+|..++..-+.....+...|..+..++.
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999999888887777777777766555443
No 280
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=66.31 E-value=23 Score=31.44 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRS 141 (185)
Q Consensus 128 ~~~~L~~EN~~Lra 141 (185)
+...++.||.+|+.
T Consensus 91 ~~~~l~~EN~~Lr~ 104 (284)
T COG1792 91 EVESLEEENKRLKE 104 (284)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555553
No 281
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=66.23 E-value=15 Score=31.15 Aligned_cols=38 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~ 121 (185)
.|.+|...++ -+..++++.+|+.+|..|+.+.+.+...
T Consensus 91 ~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~ 128 (181)
T KOG3335|consen 91 WRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKF 128 (181)
T ss_pred HHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555655554 3555667777777777766544444433
No 282
>PRK00846 hypothetical protein; Provisional
Probab=65.80 E-value=51 Score=24.19 Aligned_cols=40 Identities=25% Similarity=0.066 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
+++||.++...+.-...|...+......+..|..+=..|.
T Consensus 15 i~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~ 54 (77)
T PRK00846 15 LVELETRLSFQEQALTELSEALADARLTGARNAELIRHLL 54 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333333333333333333333333333
No 283
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=65.29 E-value=77 Score=26.13 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.|.+.|..++..++.+...|...+.....++..+...=..+...+...+.|+..|.
T Consensus 79 ~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~ 134 (158)
T PF09486_consen 79 RYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLR 134 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433
No 284
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=65.08 E-value=50 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.330 Sum_probs=24.8
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 116 RELSNRLRFA-LHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 116 ~~L~~~l~~L-~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.+++.++..+ ..+.+.|.+||+.|+.++..|+..|.
T Consensus 104 ~kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 104 AKIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445554444 45777888888888888888877664
No 285
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=64.85 E-value=88 Score=26.61 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 91 RRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 91 RRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+-.+--...+.++.++..|.........+...+...+..|..++..|..++...+.+...+..=|.
T Consensus 161 E~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld 228 (237)
T PF00261_consen 161 EASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD 228 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344556777788888888888888888888888888888888888888888877777766554
No 286
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=64.77 E-value=45 Score=32.25 Aligned_cols=55 Identities=25% Similarity=0.260 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFA---L---HHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L---~---~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
++.||.++..|+.+-.+|..++..- . .....+..|=..++.++.+|..++..+..
T Consensus 570 ~~~~e~~i~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 630 (635)
T PRK11147 570 LEQLPQLLEDLEAEIEALQAQVADADFFSQPHEQTQKVLADLADAEQELEVAFERWEELEA 630 (635)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999988888887432 1 15667777777888888888888887773
No 287
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=64.66 E-value=39 Score=31.99 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 88 ESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 88 ESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
++|-.-|+|..+.-...+..+..+..|-..|+.++........-|..||..|+.-+..|..-+..
T Consensus 227 ee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 227 EEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred HHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 45555666666666666777777777777788777777777777777777777666665554443
No 288
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=64.63 E-value=1.6e+02 Score=29.55 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
.++.|+.++..|+.++.+|+.++..|..++..+
T Consensus 430 ~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~ 462 (652)
T COG2433 430 TVERLEEENSELKRELEELKREIEKLESELERF 462 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555543
No 289
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=64.53 E-value=2.2 Score=37.41 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
|..+++...++.+|+.....|..+++.|++....|.+||.+|
T Consensus 121 KT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 121 KTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666777666666666665555555444555555555
No 290
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=64.43 E-value=69 Score=31.25 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.+...|..++..+.+++..|
T Consensus 454 E~ek~~l~eeL~~a~~~i~~L 474 (518)
T PF10212_consen 454 EKEKESLEEELKEANQNISRL 474 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 291
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=64.35 E-value=49 Score=32.68 Aligned_cols=31 Identities=23% Similarity=0.335 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
.+..|..++..|+.++..|..++..|..++.
T Consensus 504 ~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~ 534 (722)
T PF05557_consen 504 ELNELQKEIEELERENERLRQELEELESELE 534 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666666666665554443
No 292
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.26 E-value=74 Score=32.98 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
.+=|..+.+|.-+++.|+..+.+|..+...|.+++.....+-.+|+.+...|+.+|+..
T Consensus 660 ~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg~~ 718 (970)
T KOG0946|consen 660 QKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLGII 718 (970)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44445555555666666666666666666666666666666666666666666666633
No 293
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=64.19 E-value=97 Score=26.85 Aligned_cols=49 Identities=18% Similarity=0.197 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
....-..|..+...+...+..|.........|...|+.++..-+..+..
T Consensus 73 ~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 73 QEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555555544444443
No 294
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=64.07 E-value=69 Score=31.88 Aligned_cols=62 Identities=18% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
++..-.++-.+|+.+|+.|+.++..|..+|..+..++...+.+=.+-..++.+++.|---|.
T Consensus 73 ~~e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~ 134 (632)
T PF14817_consen 73 SRENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLE 134 (632)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 295
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=64.00 E-value=41 Score=33.19 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.+.+.......+...+..|.++-..|..++..+..+|+.+++-...|..+...+..+|..+
T Consensus 439 rm~~i~~~m~e~~s~~~~le~eq~~l~~ey~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi 499 (707)
T KOG0957|consen 439 RMSGISSFMQERDSQIIPLEEEQLRLSREYLAETEANQEKKSSQKHLVERFSANEELLGQI 499 (707)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhHHHHHHhh
Confidence 3444555555555555555555555666666777777777777777777777766666554
No 296
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=63.93 E-value=35 Score=31.54 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNR 121 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~ 121 (185)
+.++..|+.++..|..+
T Consensus 28 ~~~~~~~~~~~~~~~~~ 44 (398)
T PTZ00454 28 EKELEFLDIQEEYIKEE 44 (398)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444333
No 297
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=63.89 E-value=62 Score=24.52 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRL--RMENRELSNRLRFALHHC 129 (185)
Q Consensus 98 k~~l~eLe~qV~~L--~~eN~~L~~~l~~L~~~~ 129 (185)
..++..+|.++..| ..+-+.|.-++..+.-.+
T Consensus 48 ~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~ 81 (106)
T PF10805_consen 48 DRRLQALETKLEHLPTRDDVHDLQLELAELRGEL 81 (106)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHH
Confidence 34445555555555 444444444444433333
No 298
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=63.88 E-value=34 Score=33.59 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ 164 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~ 164 (185)
.++++...+++.++..-......+..+.+.+..++.+|..|..+....+.-+..|..+|..+.+.+
T Consensus 37 ~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~i~~ 102 (701)
T PF09763_consen 37 EYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLSIPE 102 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcCCCH
Confidence 566777778888888888888888889999999999999999999999999999999988776543
No 299
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=63.70 E-value=69 Score=32.22 Aligned_cols=58 Identities=19% Similarity=0.252 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
..++.+||.+-..|..+..++..+++.+++.+.....|=.+|+-++..-...++.+.+
T Consensus 92 s~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 92 SLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3577788888888888888888888888887777777777777776665555555543
No 300
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.54 E-value=43 Score=30.14 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=41.8
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH--------------CQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~--------------~~~L~~EN~~Lrae~~~Lr 147 (185)
....+-+.++..=..++..+.+++.++..|+.+......+...+... +..|..|+.+....+..|.
T Consensus 225 ~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~~~~~l~ 304 (344)
T PF12777_consen 225 EAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSEQIEELE 304 (344)
T ss_dssp HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHHHHHHHH
Confidence 34444445555555666677777777777666655544443333322 2234566666677777777
Q ss_pred HHHHHHH
Q 029952 148 RRLSEIR 154 (185)
Q Consensus 148 ~rL~~l~ 154 (185)
.++..+.
T Consensus 305 ~~~~~l~ 311 (344)
T PF12777_consen 305 EQLKNLV 311 (344)
T ss_dssp HHHHHHH
T ss_pred HHhcccH
Confidence 7766654
No 301
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=63.53 E-value=29 Score=33.34 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029952 116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ 164 (185)
Q Consensus 116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~ 164 (185)
.+|...+..|..++..|+..|..|++.+.+++.++..+.+++...+.+.
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~eer~~v~~lkql~~~~q~e~ 457 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEERERVIELKQLVNLLQEEN 457 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3566677778888888888889999999999999999999998887764
No 302
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=63.43 E-value=31 Score=25.90 Aligned_cols=41 Identities=29% Similarity=0.372 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
+|.....||..|+.++..++.=+ ...|-..|-.++..|+..
T Consensus 45 evtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 45 EVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 45567778888888888777655 666777888888888764
No 303
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=63.42 E-value=56 Score=31.96 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
.++++.++..|+.|......+..++...+.....+..+=..|+.+...+..|-.-+...+...++.
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls 109 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLS 109 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888888888888888888888888888777777666655544
No 304
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.39 E-value=49 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
-...++.++.+.+..|..|..++..|..++..+
T Consensus 26 ~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 26 ANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788888888888888887766666443
No 305
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=63.35 E-value=91 Score=32.03 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
|..++..+++++..+..+-.+|+.....|++.+..|+
T Consensus 221 L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 221 LEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444444
No 306
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=63.35 E-value=67 Score=26.71 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 140 RSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 140 rae~~~Lr~rL~~l~~il~~~~ 161 (185)
|.|+.++..+|..|++-|....
T Consensus 124 r~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 124 RREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777778888887777753
No 307
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=62.92 E-value=25 Score=27.38 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
|..+..+|+.||.-|+-+++.|..
T Consensus 77 lkkk~~~LeEENNlLklKievLLD 100 (108)
T cd07429 77 LKKKNQQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455555555555555544443
No 308
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=62.78 E-value=34 Score=30.24 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..|.+++..|+++...+ |.+|.....+|++....|+.+|.+.
T Consensus 69 ~~l~~EN~~Lr~e~~~l---~~~~~~~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 69 NNLEYENYKLRQELLKK---NQQLEILTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34555555555444333 1122222222444455555555554
No 309
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=62.70 E-value=1.7e+02 Score=31.14 Aligned_cols=76 Identities=16% Similarity=0.186 Sum_probs=51.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
|..+=.+.||+--..--+++-..++++..+.-.|+.++..|..++..|.+.+..+...+..|+..-..|......|
T Consensus 373 ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 373 RALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888877777777777888888888888887777777777777766666665555554444444444333
No 310
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=62.64 E-value=1.1e+02 Score=28.00 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 029952 125 ALHHCQRVRTDND--RLRSEHTILRRRLS 151 (185)
Q Consensus 125 L~~~~~~L~~EN~--~Lrae~~~Lr~rL~ 151 (185)
+.++||+++++=+ .-|.|+..|++-++
T Consensus 106 IEEECHRVEAQLALKEARkEIkQLkQvie 134 (305)
T PF15290_consen 106 IEEECHRVEAQLALKEARKEIKQLKQVIE 134 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777665542 12344444544443
No 311
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=62.63 E-value=60 Score=27.72 Aligned_cols=60 Identities=15% Similarity=0.243 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+..||.+|..|+..-..+-..+..-.++.-.+..+-..|+..+..|-.++..+-++|.
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666777777665555554444433344444555555555566666666655555555
No 312
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.86 E-value=1.4e+02 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.217 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.+..-+..+.+++..+..+-..|..++.+|+.+|..++.-|...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 128 EWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555666666666666666666666666666655443
No 313
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=61.70 E-value=1.5e+02 Score=28.38 Aligned_cols=70 Identities=21% Similarity=0.296 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 86 NRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 86 NRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
|..+|..--.|-.++..+|..++..|-.+-+.|..+.+.|...-..|..--.+|+.+..+|..+-..++|
T Consensus 131 n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ 200 (499)
T COG4372 131 NLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQ 200 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444555566666666666666666666666655555555555666666666555444443
No 314
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=61.63 E-value=2e+02 Score=30.67 Aligned_cols=36 Identities=17% Similarity=0.208 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
|.-++++|+.+-..+...+..+...+..+..|+..|
T Consensus 820 l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l 855 (1174)
T KOG0933|consen 820 LQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNL 855 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 315
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=61.18 E-value=36 Score=33.57 Aligned_cols=46 Identities=11% Similarity=0.257 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
+.|+.+++.+...+...-..|..++....+++..|..+|..|+..+
T Consensus 279 ~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 279 QAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666666666666666665443
No 316
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.16 E-value=82 Score=25.05 Aligned_cols=51 Identities=18% Similarity=0.183 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.|.....+|..+|+.|-.++.+..+=....+.++.+++..+..+...+..+
T Consensus 58 ~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v 108 (126)
T PF07889_consen 58 SLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSV 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344445556666666666666666666666666666666666665555444
No 317
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=61.15 E-value=21 Score=28.31 Aligned_cols=30 Identities=13% Similarity=0.310 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+++++-|++++..|+..|.+|+.|..-|+.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666555554
No 318
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=61.07 E-value=1.1e+02 Score=26.24 Aligned_cols=50 Identities=20% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..-|+.|-..|...+..-+.....++.|+..+...+.+=+.|+..+.-.|
T Consensus 136 t~lLEkEReRLkq~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 136 TNLLEKERERLKQQLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56688888889999988888999999999988877777666666665444
No 319
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=60.96 E-value=78 Score=24.74 Aligned_cols=69 Identities=19% Similarity=0.199 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.-.||.-.+..+..|+..++.+.....+|..+-..|......|..+|..+-..+.+|..+|..+..-|.
T Consensus 7 l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 7 LEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666666666666666666666666666666666665554443
No 320
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=60.72 E-value=84 Score=24.98 Aligned_cols=74 Identities=20% Similarity=0.323 Sum_probs=39.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLR-------NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR-RLSEI 153 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe-------~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~-rL~~l 153 (185)
+++..-+.+...-.+|+..++.|+ .+|..|+.+...+..++..+...+..+ +..++.|+..+.. +..+|
T Consensus 114 ~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i---~~~~~~El~~f~~~~~~dl 190 (218)
T cd07596 114 DALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEI---SERLKEELKRFHEERARDL 190 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 444555666666666666666654 255555555566665555555444333 3345555555433 44444
Q ss_pred HHHHH
Q 029952 154 RQILL 158 (185)
Q Consensus 154 ~~il~ 158 (185)
..+|.
T Consensus 191 k~~l~ 195 (218)
T cd07596 191 KAALK 195 (218)
T ss_pred HHHHH
Confidence 44443
No 321
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=60.71 E-value=54 Score=22.79 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
..|..+|.+|..+...|+..+..
T Consensus 13 q~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 13 QTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 322
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=60.65 E-value=15 Score=25.09 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
....-.....++..|+.||..|+.++..++.
T Consensus 20 R~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 20 RSLDRSAARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334466778888999999999998876543
No 323
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=60.53 E-value=1.2e+02 Score=27.82 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..+..||.+|+..+..-..|..+|...|
T Consensus 264 k~ireEN~rLqr~L~~E~erreal~R~l 291 (310)
T PF09755_consen 264 KEIREENRRLQRKLQREVERREALCRHL 291 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444444444444433
No 324
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=60.43 E-value=69 Score=26.14 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 137 DRLRSEHTILRRRLSE 152 (185)
Q Consensus 137 ~~Lrae~~~Lr~rL~~ 152 (185)
..+..|+.+|+.+|..
T Consensus 157 ~~~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEK 172 (192)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3333333333333333
No 325
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=59.81 E-value=1.4e+02 Score=27.47 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.++..|..+-+..+.++..+++++..+..-...+..++.+|..+|..+.+-+.-+
T Consensus 266 ~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeer 320 (359)
T PF10498_consen 266 NQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEER 320 (359)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666666667777777777777777777777777777777666665544
No 326
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=59.69 E-value=49 Score=30.65 Aligned_cols=10 Identities=20% Similarity=-0.021 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 029952 112 RMENRELSNR 121 (185)
Q Consensus 112 ~~eN~~L~~~ 121 (185)
+.++..|..+
T Consensus 28 ~~~~~~~~~~ 37 (398)
T PTZ00454 28 EKELEFLDIQ 37 (398)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 327
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=59.58 E-value=2.3e+02 Score=30.01 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~ 121 (185)
|-..+-|-+.||.-.+-++++..++-++.+.+-.+|+.+.+.|+.=
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl 1071 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKL 1071 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677887777788888888888887777777777666543
No 328
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=59.23 E-value=92 Score=26.21 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
.+|++++.+...+...++.+..+|..++.
T Consensus 142 ~~r~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 142 KIRQELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555544443
No 329
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=59.18 E-value=1.4e+02 Score=26.91 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
...|..|..+...|+.+|..|-..+..+
T Consensus 127 ~~~~~k~~~eN~~L~eKlK~l~eQye~r 154 (309)
T PF09728_consen 127 SERNIKLREENEELREKLKSLIEQYELR 154 (309)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666665555544
No 330
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=59.14 E-value=1.3e+02 Score=29.12 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
-..||+.|.+.+.+|..||..
T Consensus 461 CQrEnQELnaHNQELnnRLaa 481 (593)
T KOG4807|consen 461 CQRENQELNAHNQELNNRLAA 481 (593)
T ss_pred HHHhhHHHHHHHHHHhhHHHH
Confidence 344555566666666666654
No 331
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=59.05 E-value=1.2e+02 Score=27.19 Aligned_cols=63 Identities=24% Similarity=0.307 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
.+..+..+++.|+-+.++|.-.-+.=.+-.+.+.+|-.+|..+.+.|..+|..|++-+....+
T Consensus 187 qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~~e~~r~~l 249 (289)
T COG4985 187 QVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALRAELERQFL 249 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhceE
Confidence 344444555555555444433322222344556778888888888888888888877765443
No 332
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=58.72 E-value=16 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 029952 139 LRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCN 172 (185)
Q Consensus 139 Lrae~~~Lr~rL~~l~~il~~~~~~~~~~~~~~~ 172 (185)
|-+|+..|+++-.+|.--|.+..-......|-|+
T Consensus 26 LH~EIe~Lq~~~~dL~~kL~m~~~~~~~~~~s~~ 59 (60)
T PF14916_consen 26 LHAEIERLQKRNKDLTFKLIMKQPSSSQDGSSSS 59 (60)
T ss_pred HHHHHHHHHHhccccceeeeecCCCCCCcccccc
Confidence 4556666666666666555555555544555443
No 333
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=58.45 E-value=1.3e+02 Score=31.10 Aligned_cols=64 Identities=9% Similarity=0.180 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRE---------------LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~---------------L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.-++++++|+++.-|+.|..+ ...++..+..+...++.|=.++.+-...|+.....|.+....+
T Consensus 54 evrRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E~~~vl 132 (829)
T KOG2189|consen 54 EVRRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLELKYVL 132 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 556788888888888888776 2566777788888888888888888888887777766655544
No 334
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.41 E-value=1e+02 Score=30.40 Aligned_cols=62 Identities=23% Similarity=0.283 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL--------------RSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L--------------rae~~~Lr~rL~~l~~il~~~ 160 (185)
+.+..+..+.+.+..+|.+|..+|..++++..-+..||..| .+|..+|..+-..+.+-++-.
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~Ea 294 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEA 294 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666667777777777777777666666666544 455555666655555555544
No 335
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=58.38 E-value=1.8e+02 Score=28.13 Aligned_cols=46 Identities=22% Similarity=0.292 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+.|+.+.+...-.+++.|+.||-.++ .+.|+.||..||..++.|+.
T Consensus 280 e~rrhrEil~k~eReasle~Enlqmr---------~qqleeentelRs~~arlks 325 (502)
T KOG0982|consen 280 EERRHREILIKKEREASLEKENLQMR---------DQQLEEENTELRSLIARLKS 325 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666666666664443 34455666666665555543
No 336
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=58.34 E-value=31 Score=25.46 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l 122 (185)
.++.|..++..|..+|..|..++
T Consensus 76 ~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 76 QIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555556666655555543
No 337
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=58.28 E-value=1.1e+02 Score=25.71 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+..++..|..++..|..+|.
T Consensus 169 ~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 169 AQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 338
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.25 E-value=26 Score=26.17 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+......|...+..+..+|..|..++..+++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556677778888889999999888887764
No 339
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=58.21 E-value=1.7e+02 Score=27.67 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..+..-...+..++..+..+...+..+=..|+.++..|+.+|..+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 127 KEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444555555555555555555555555555555554443
No 340
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=58.12 E-value=1.1e+02 Score=25.46 Aligned_cols=60 Identities=13% Similarity=0.235 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.|.+.++.++++|+..-..+...+. ..++..=..|=..+.+.+..|.+++..++++..--
T Consensus 92 ~~~~~l~~ri~eLe~~l~~kad~vv--sYqll~hr~e~ee~~~~l~~le~~~~~~e~~~~~~ 151 (175)
T PRK13182 92 AQLNTITRRLDELERQLQQKADDVV--SYQLLQHRREMEEMLERLQKLEARLKKLEPIYITP 151 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 3444455555555554444444432 22333335677778999999999999988877653
No 341
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=58.08 E-value=22 Score=26.12 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+.+..||.+|+.++..|...|..+..
T Consensus 3 ~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666655555555443
No 342
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.86 E-value=1.5e+02 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=14.4
Q ss_pred CCCCCCccccCcccCCCCCCC
Q 029952 2 LSACPAIFSSEMMFGNPFPDF 22 (185)
Q Consensus 2 ~s~~~~~~~~~~~~~~~~~~~ 22 (185)
||-.-..-+.||-+.|||++=
T Consensus 1 ~s~~d~NPFadp~~~NPF~dp 21 (313)
T KOG3088|consen 1 MSRYDPNPFAEPELVNPFADP 21 (313)
T ss_pred CCCCCCCCCCCcccCCCCCCc
Confidence 344455557888888998864
No 343
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=57.78 E-value=1.1e+02 Score=28.51 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHH----CQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~----~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+...+|..+++.|+.+-..+.+++..+... ...+..+-..|+.++.+|...+..+..-+...-+.
T Consensus 37 ~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 344
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=57.63 E-value=51 Score=30.05 Aligned_cols=6 Identities=17% Similarity=0.246 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029952 144 TILRRR 149 (185)
Q Consensus 144 ~~Lr~r 149 (185)
..|+.+
T Consensus 39 ~~~~~~ 44 (389)
T PRK03992 39 ERLKSE 44 (389)
T ss_pred HHHHHH
Confidence 333333
No 345
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=57.53 E-value=22 Score=29.62 Aligned_cols=12 Identities=42% Similarity=0.576 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHH
Q 029952 111 LRMENRELSNRL 122 (185)
Q Consensus 111 L~~eN~~L~~~l 122 (185)
|+.++|.|+.++
T Consensus 29 L~~~~QRLkDE~ 40 (166)
T PF04880_consen 29 LREEVQRLKDEL 40 (166)
T ss_dssp HHHCH-------
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 346
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=57.51 E-value=2.6e+02 Score=29.69 Aligned_cols=63 Identities=17% Similarity=0.210 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENR--------------ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~--------------~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+...+++|+.++..++.+-. .|..+...++..++....|=..+..++.+++..|..-..|+..
T Consensus 446 ~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~ 522 (1041)
T KOG0243|consen 446 MAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQ 522 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555544443 3444444444444444444444555555555555444444433
No 347
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.45 E-value=1.1e+02 Score=26.25 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
..+|..|++..+.|..||..||.
T Consensus 54 l~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 54 LNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555556655543
No 348
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.28 E-value=1.6e+02 Score=31.38 Aligned_cols=61 Identities=7% Similarity=0.146 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRE-----LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~-----L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+..+.+++.++..|..++.. +..+...+..++..+..++..|..+...|...+..+..-|
T Consensus 1026 ~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL 1091 (1311)
T TIGR00606 1026 RENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKEL 1091 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665543 3444444555555555555555555555555555544444
No 349
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=57.28 E-value=43 Score=30.57 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
++.++..|+..+..|..++..+..+...+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (389)
T PRK03992 13 LEEQIRQLELKLRDLEAENEKLERELERLKSEL 45 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443333333
No 350
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=56.80 E-value=48 Score=24.91 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.+.|..||+.|..+.. ....+.+|...+..+.+=..++
T Consensus 32 ~~kL~~en~qlk~Ek~-----~~~~qvkn~~vrqknee~~~~~ 69 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKA-----VAETQVKNAKVRQKNEENTRRL 69 (87)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHhhccC
Confidence 4444444444444433 2333456777777666654444
No 351
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=56.78 E-value=89 Score=24.06 Aligned_cols=49 Identities=20% Similarity=0.173 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
|-.||.+++-.++-...|-..|. -+.++..|..+++.+..+......+.
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~-----ae~ei~~l~~~l~~l~~~~~~~~~~~ 103 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLK-----AEQEIERLHRKLDALREKLGELLERD 103 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 45677776643322222222222 22344555555555555544444333
No 352
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=56.69 E-value=98 Score=26.21 Aligned_cols=54 Identities=26% Similarity=0.376 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
|+.++.....+-..+...+..+...+..+..-=.++...+.+.+.++..+...|
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L 136 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQL 136 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333444455555555555555444
No 353
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=56.53 E-value=1e+02 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..+.+..++..++.++......+..++.-|
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l 114 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREEL 114 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444443333
No 354
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=56.46 E-value=60 Score=22.01 Aligned_cols=25 Identities=16% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 136 NDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 136 N~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
...++..+..|..++..|...+.-+
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r 99 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEER 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666777776666665544
No 355
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=56.45 E-value=1.5e+02 Score=26.46 Aligned_cols=45 Identities=16% Similarity=0.297 Sum_probs=31.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
++..-+..=+.-..+-..++..|+.+|.+|.+.......++..|.
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555566677888888888888888888887777765
No 356
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.34 E-value=61 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.577 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRL 122 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l 122 (185)
+.++..|..|-..|.+.+
T Consensus 63 Q~~~~~L~~ev~~~~~~~ 80 (247)
T COG3879 63 QKKVNTLAAEVEDLENKL 80 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 357
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=56.09 E-value=2.4e+02 Score=30.14 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.|..+|..++...+.++..+..+=..|..++..|..++..
T Consensus 822 lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~ 861 (1174)
T KOG0933|consen 822 LEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDK 861 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444444444444433
No 358
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=55.48 E-value=1.2e+02 Score=25.34 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..++..+.++...|..+|..|+.+...+..-...|-.|+..
T Consensus 110 ~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eDy~~Li~Im~r 150 (170)
T PRK13923 110 SEQIGKLQEEEEKLSWENQTLKQELAITEEDYRALIVIMNR 150 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666654
No 359
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=55.12 E-value=51 Score=26.02 Aligned_cols=60 Identities=32% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+.|-.+...++..++..+..|..++=.+....+-+..-+..|..+-..|+.+|..|...|
T Consensus 64 ~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l 123 (141)
T PF13874_consen 64 QKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQL 123 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
No 360
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=55.04 E-value=1e+02 Score=27.84 Aligned_cols=41 Identities=20% Similarity=0.304 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+..++..|+++...+..+|..|-.++..|+..+..+.|-++
T Consensus 225 kLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~~V~ 265 (279)
T KOG0837|consen 225 KLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQKVM 265 (279)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666667777777777777766666665443
No 361
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=55.00 E-value=1.2e+02 Score=24.99 Aligned_cols=75 Identities=24% Similarity=0.342 Sum_probs=45.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH----------------------HHHHHHH
Q 029952 84 ISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSN-------RLRFALH----------------------HCQRVRT 134 (185)
Q Consensus 84 lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~-------~l~~L~~----------------------~~~~L~~ 134 (185)
..=.|+||....+-+..++++..+|...-.+...|.. ++..+.. ++.-+..
T Consensus 19 f~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re 98 (159)
T PF05384_consen 19 FEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLRE 98 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346788888888888888888766555555444443 3333222 1222344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+=..|+.....|..+|..+..++.
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tie 122 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIE 122 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777766665
No 362
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.98 E-value=1.6e+02 Score=30.75 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.+.|..|..|+..|..++..|.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls 457 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLS 457 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333344444444444444333
No 363
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=54.92 E-value=1.2e+02 Score=30.92 Aligned_cols=52 Identities=25% Similarity=0.349 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRL---------------------RFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l---------------------~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.++.++..++..+..||..|...+ ..|..++..++.||..|+-|+..|...|
T Consensus 92 ~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 92 AKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888888888777633 3444555555566655555555554444
No 364
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=54.88 E-value=1.4e+02 Score=28.71 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 89 SARRSRMRKQKHLENLRN-----QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 89 SARRSR~RKk~~l~eLe~-----qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
-|-+-+..=+++++.|+. +.+++..+-..|..+-..|.+++..++.++..|-.++.+++.+-..+.+
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~~e 225 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERLNE 225 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666677777764 4556666666666666677777777777777777776666666555544
No 365
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=54.82 E-value=32 Score=26.82 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~ 148 (185)
..|+.||..|+-++..|-.
T Consensus 82 ~~LeEENNlLklKievLLD 100 (108)
T cd07429 82 QQLEEENNLLKLKIEVLLD 100 (108)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555444444433
No 366
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=54.46 E-value=89 Score=23.36 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
.|+.|..-+..|+..|..|..++ ..|...|++.|.+.
T Consensus 34 ~LD~Lns~LD~LE~rnD~l~~~L-------~~LLesnrq~R~e~ 70 (83)
T PF03670_consen 34 MLDQLNSCLDHLEQRNDHLHAQL-------QELLESNRQIRLEF 70 (83)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHHHHHHH
Confidence 34555555555555555555554 34444555555443
No 367
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.45 E-value=72 Score=31.91 Aligned_cols=33 Identities=18% Similarity=0.110 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
.+..+++-+-..|...|..|+.||-.|..++..
T Consensus 156 ~elKe~KfRE~RllseYSELEEENIsLQKqVs~ 188 (772)
T KOG0999|consen 156 DELKEYKFREARLLSEYSELEEENISLQKQVSN 188 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 333333333333444444444444444444333
No 368
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=54.16 E-value=2.5e+02 Score=28.98 Aligned_cols=52 Identities=35% Similarity=0.379 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+.+.|..+-..+++++..+...-..+..++..||.++..|+.......+.+
T Consensus 216 e~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~~~~~~~~~m 267 (916)
T KOG0249|consen 216 EDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRRSSLEKEQEL 267 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 3567788888999999999999999999999999999999997555544443
No 369
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=53.75 E-value=1.7e+02 Score=26.53 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=30.8
Q ss_pred HHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMR-KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 83 ~lsNRESARRSR~R-Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
-+.+..++-++... +-+.+.+|..++..|..+-.++..+++.++..-..+-..=..|+.++..|+....
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444443322 2244445555555555555555555555444444444444444444444444333
No 370
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=53.69 E-value=1.1e+02 Score=27.92 Aligned_cols=11 Identities=36% Similarity=0.667 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 029952 102 ENLRNQLNRLR 112 (185)
Q Consensus 102 ~eLe~qV~~L~ 112 (185)
..|+.++..+.
T Consensus 63 ~~L~~ql~~~~ 73 (372)
T PF04375_consen 63 QALQQQLQQLQ 73 (372)
T ss_pred HHHHHHHHHHH
Confidence 33344443333
No 371
>PRK14160 heat shock protein GrpE; Provisional
Probab=53.58 E-value=1.2e+02 Score=26.17 Aligned_cols=39 Identities=28% Similarity=0.446 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
+..|+.++..|+.++..|..++..++.++..+.+|..-.
T Consensus 56 ~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~ 94 (211)
T PRK14160 56 IEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNY 94 (211)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555556666665555555554444333
No 372
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=53.52 E-value=33 Score=32.98 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
++.|..++..-.+||..|..++.+|..
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~ 300 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELEL 300 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhh
Confidence 344444444445555555555544433
No 373
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=53.38 E-value=82 Score=22.63 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
...+..-..|+..+.....+...|.+.+..|-.++..|...+..|
T Consensus 24 ~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 24 QEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333344444444444444444444555555555555555554443
No 374
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=53.24 E-value=29 Score=29.63 Aligned_cols=47 Identities=23% Similarity=0.342 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..+.+|...-+.|+.++..|..+|..|..++.+|+..+..+...+..
T Consensus 105 wK~kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 105 WKTKQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred ccchhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 34445666667777788888888888888888888887776666555
No 375
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=53.08 E-value=1.5e+02 Score=31.53 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+.++-..|++|..++....++...+..+|.+.+.....+++.+..+++.+...
T Consensus 260 i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~~l 312 (1109)
T PRK10929 260 IVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQSQWL 312 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444669999999999999999999999999999999888888888776544
No 376
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=53.04 E-value=1.3e+02 Score=26.90 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELS 119 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~ 119 (185)
++.++..++.+-....
T Consensus 175 l~~ql~~~~~~l~~ae 190 (362)
T TIGR01010 175 AENEVKEAEQRLNATK 190 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 377
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=52.96 E-value=2.2e+02 Score=28.57 Aligned_cols=10 Identities=30% Similarity=0.640 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 029952 104 LRNQLNRLRM 113 (185)
Q Consensus 104 Le~qV~~L~~ 113 (185)
|..++..|+.
T Consensus 246 l~~~l~~l~~ 255 (670)
T KOG0239|consen 246 LQQELEELKA 255 (670)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 378
>PF08961 DUF1875: Domain of unknown function (DUF1875); InterPro: IPR015056 MIT can be found in the Nuclear receptor-binding factor 2, it has no known function. ; PDB: 2CRB_A.
Probab=52.69 E-value=4.6 Score=35.43 Aligned_cols=46 Identities=20% Similarity=0.373 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
-.+....++.....+..|+.-++.|..+...|..||.+|+++.+.|
T Consensus 117 pKDdKT~IEEQ~T~I~dLrrlVe~L~aeNErLr~EnkqL~ae~arL 162 (243)
T PF08961_consen 117 PKDDKTRIEEQATKIADLRRLVEFLLAENERLRRENKQLKAENARL 162 (243)
T ss_dssp ----------------------------------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666677766666666666666666666666665
No 379
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=52.69 E-value=1.6e+02 Score=30.12 Aligned_cols=46 Identities=26% Similarity=0.309 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE 142 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae 142 (185)
.+..++.+..+..+++.....|+..+....+++..|.+++..|+.+
T Consensus 306 ~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~r 351 (775)
T PF10174_consen 306 LQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFR 351 (775)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3333344444444444444444444444444444444444333333
No 380
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=52.64 E-value=1.9e+02 Score=27.17 Aligned_cols=21 Identities=10% Similarity=0.194 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~r 149 (185)
...++.+...|..++..|..+
T Consensus 101 l~~~e~~~~~l~~q~~~Lq~~ 121 (390)
T PRK10920 101 LDQANRQQAALAKQLDELQQK 121 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 381
>PF04599 Pox_G5: Poxvirus G5 protein; InterPro: IPR007678 Protein G5 is found in a number of Poxviruses.
Probab=52.52 E-value=1.8e+02 Score=27.83 Aligned_cols=93 Identities=18% Similarity=0.323 Sum_probs=54.3
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRE-------LSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~-------L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
..++.-|.|| |.|-+-.-.||+.+++.|+...+.|..++.. +..+++.+.- +---+++..++.-+.+
T Consensus 77 ~iK~~lReKR----r~a~k~~~~RK~~~i~~l~~~~~~ld~~d~~yeEikt~~~lki~K~~F--~~fla~~~n~k~~l~~ 150 (425)
T PF04599_consen 77 NIKEPLREKR----RKALKNTIKRKREEIENLEDCIKNLDVDDEFYEEIKTDLELKIQKLSF--QLFLANSNNLKTILES 150 (425)
T ss_pred chhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH--HHHhcchhhHHHHHHH
Confidence 3444445555 6677777888999999988877755543332 3333333333 2234455556665555
Q ss_pred HHHHH-------------HHHHHHHHHHHhhccCCCCCC
Q 029952 146 LRRRL-------------SEIRQILLYRQLQQVTSAWPC 171 (185)
Q Consensus 146 Lr~rL-------------~~l~~il~~~~~~~~~~~~~~ 171 (185)
+=.++ ..+.--...+.+-..++.||-
T Consensus 151 ~L~~~~~~V~IvyCDgvDAEFvMC~~Ak~~a~~~g~WPl 189 (425)
T PF04599_consen 151 SLSRLKEDVEIVYCDGVDAEFVMCARAKKLAAKNGRWPL 189 (425)
T ss_pred HHHhccCCceEEEECCcChhHHHHHHHHHHHHhcCCCce
Confidence 55555 233444455566677799994
No 382
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.40 E-value=1.1e+02 Score=32.18 Aligned_cols=56 Identities=13% Similarity=0.121 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
+++||.+-..+....+.+.....-..+..+.|..+-+.+..++.+|+.++-.++++
T Consensus 353 ~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 353 LNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 34444444444444444444444444445555555555555555555555555544
No 383
>PHA02562 46 endonuclease subunit; Provisional
Probab=52.16 E-value=2e+02 Score=26.78 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+..+.+++.++..++..-..+..+...++.....|+.++..+..++..|..+|..+
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~ 391 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKI 391 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444433
No 384
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=52.14 E-value=92 Score=29.46 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQ 164 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~ 164 (185)
++.+|+.++..++.....+.. ...-..+..+=..|..++..|++++..|...|.......
T Consensus 171 Rl~~L~~qi~~~~~~l~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 171 RLDELEEQIEKHEEKLGELEL-----NPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred HHHHHHHHHHHHHHhhhcccc-----ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345566666665554444332 112223334444566666777777777777776664443
No 385
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=51.45 E-value=1.3e+02 Score=25.61 Aligned_cols=62 Identities=23% Similarity=0.299 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFA--LHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L--~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+.+++.+++.|+.+-.+|..-+... .+.+..++.|=.+.+.++..++.++..|.+...+-
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~~s 195 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVDYS 195 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhceE
Confidence 334455666666665555555444322 23344555555566777777777777777666554
No 386
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.43 E-value=2.2e+02 Score=28.31 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLR 112 (185)
Q Consensus 100 ~l~eLe~qV~~L~ 112 (185)
++.+|+.++..|+
T Consensus 51 ~V~eLE~sL~eLk 63 (617)
T PF15070_consen 51 RVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 387
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=51.42 E-value=1.9e+02 Score=30.43 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
+..|+.+...|+.+-+.|...+..+..+..
T Consensus 108 iriLQn~c~~lE~ekq~lQ~ti~~~q~d~k 137 (1265)
T KOG0976|consen 108 IRILQNKCLRLEMEKQKLQDTIQGAQDDKK 137 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443333
No 388
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=51.36 E-value=5 Score=39.53 Aligned_cols=35 Identities=23% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
++|-..+++|..+|..|+..|..|...+..|.+++
T Consensus 321 KkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel 355 (713)
T PF05622_consen 321 KKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEEL 355 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888887776655555433
No 389
>PF15369 KIAA1328: Uncharacterised protein KIAA1328
Probab=51.36 E-value=2e+02 Score=26.56 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=21.6
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 87 RESARRSRMRK------QKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 87 RESARRSR~RK------k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+|-||-+-.|- +.+-+.+|.++..|+.+|.-+..+-..|..
T Consensus 15 ~~la~~~~~~e~~~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~ 61 (328)
T PF15369_consen 15 KELARVSEEKEVTEERLKAEQESFEKKIRQLEEQNELIIKEREDLQQ 61 (328)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 35566554432 334455556666666666655555444443
No 390
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=51.31 E-value=65 Score=25.82 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
..|.-++.|+.+...=-.++..|++++..+...|..|
T Consensus 91 ~yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 91 TYEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444444444433
No 391
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=51.26 E-value=87 Score=32.10 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
++.-.++...++.+|..++.+++.+..++..++.|-+.+
T Consensus 720 le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 720 LEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444444444433
No 392
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=51.24 E-value=1.4e+02 Score=24.80 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
++.|..++..++.+...|..++...
T Consensus 71 ~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 71 LEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 393
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=51.06 E-value=1.1e+02 Score=23.63 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
..+-..|..++..+..|+.+|...
T Consensus 97 ~~qk~~le~e~~~~~~r~~dL~~Q 120 (132)
T PF07926_consen 97 EEQKEQLEKELSELEQRIEDLNEQ 120 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888888888777643
No 394
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.03 E-value=1.9e+02 Score=26.03 Aligned_cols=21 Identities=19% Similarity=0.408 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.+-..++..+.+.++||..+
T Consensus 220 Eke~~e~~~~i~e~~~rl~~l 240 (269)
T PF05278_consen 220 EKEVKEIKERITEMKGRLGEL 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444333
No 395
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=50.86 E-value=76 Score=27.47 Aligned_cols=55 Identities=18% Similarity=0.232 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
-|+..-..++..++.|-.+|+...+.-..+...|+ .||+++.+++.++..|...|
T Consensus 42 f~~s~k~eel~~~~~eEe~LKs~~q~K~~~aanL~----~lr~Ql~emee~~~~llrQL 96 (211)
T COG3167 42 FYLSGKLEELEELEAEEEELKSTYQQKAIQAANLE----ALRAQLAEMEERFDILLRQL 96 (211)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHHHHHHHHHHHhC
Confidence 34444455666666666667666554444333332 57777777777777665443
No 396
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=50.84 E-value=1.2e+02 Score=23.91 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|+.|+..++.-...|..|+..|+..|.
T Consensus 37 LEGE~r~~e~l~~dL~rrIkMLE~aLk 63 (134)
T PF08232_consen 37 LEGERRGQENLKKDLKRRIKMLEYALK 63 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444444444444443
No 397
>PRK12705 hypothetical protein; Provisional
Probab=50.83 E-value=2.4e+02 Score=27.34 Aligned_cols=34 Identities=12% Similarity=0.112 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
|..+-..|..+...|......|......|..+..
T Consensus 86 l~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 86 LVQKEEQLDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433333333
No 398
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=50.75 E-value=2.4e+02 Score=31.79 Aligned_cols=69 Identities=14% Similarity=0.282 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
.-...++.++.|..+|..++.++..+.....+.++++..|...=..++.++..|+.|-..|...|....
T Consensus 655 ~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~ 723 (1822)
T KOG4674|consen 655 NLKKLQEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQE 723 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566788999999999999999999999999999999998888999999999999999999888763
No 399
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.68 E-value=43 Score=22.27 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
++-|..=.+.|..||+.|+.++..|+
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLr 32 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELR 32 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777788888877776554
No 400
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.66 E-value=1.2e+02 Score=27.60 Aligned_cols=54 Identities=20% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.+|+.+++--+..+.+|+.....|...+..|..+-....+.+-.|.++|..-+
T Consensus 238 ia~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr 291 (330)
T KOG2991|consen 238 IAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETR 291 (330)
T ss_pred HHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555554444555555555444
No 401
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=50.48 E-value=1.6e+02 Score=28.57 Aligned_cols=35 Identities=20% Similarity=0.112 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDN 136 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN 136 (185)
..+..+-.+.+.+|..|+..+..-.++-..|...|
T Consensus 281 ~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~l 315 (552)
T KOG2129|consen 281 MQYRAEEVDHREENERLQRKLINELERREALCRML 315 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555556666666665544444443343333
No 402
>PLN02678 seryl-tRNA synthetase
Probab=50.45 E-value=1.5e+02 Score=28.16 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+..+=..|+.++..|...+..+.+-|...
T Consensus 76 l~~~~~~Lk~ei~~le~~~~~~~~~l~~~ 104 (448)
T PLN02678 76 LIAETKELKKEITEKEAEVQEAKAALDAK 104 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555556666666555555555544
No 403
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=50.23 E-value=1.3e+02 Score=28.25 Aligned_cols=42 Identities=29% Similarity=0.358 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
..|++++.+++.-..+|..+..++..+++.|..|...-+.|+
T Consensus 154 D~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elK 195 (405)
T KOG2010|consen 154 DVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELK 195 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777777766665555555554
No 404
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=50.19 E-value=83 Score=21.75 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
...|+.-|..|..+.. +..++..|+.+|..|+
T Consensus 22 ~~~l~rY~~vL~~R~~-l~~e~~~L~~qN~eLr 53 (60)
T PF14775_consen 22 ENFLKRYNKVLLDRAA-LIQEKESLEQQNEELR 53 (60)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3455666666666643 2223344444444443
No 405
>COG4420 Predicted membrane protein [Function unknown]
Probab=50.09 E-value=1.1e+02 Score=26.18 Aligned_cols=45 Identities=20% Similarity=0.146 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 114 ENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 114 eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+-..|..++..|.....-+..|+..||..++++...+........
T Consensus 135 e~~~l~~kLd~lr~~lg~~~~~l~~lre~l~~i~~~~~~~~~~~~ 179 (191)
T COG4420 135 EVAALHEKLDELRLDLGYVRDELDDLRELLAEIEPELADEEALRR 179 (191)
T ss_pred HHHHHHHHHHHHHHhcchhhhchHHHHHHHHHhCcccccHHHHHH
Confidence 445566666666666556666777777777776666666555443
No 406
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=50.02 E-value=93 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+.++.++.++..+..|-..+..+.+.+.+........=+.+-....++-.-+..+.+
T Consensus 32 ~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l~~ 89 (90)
T PF06103_consen 32 NKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSELNS 89 (90)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhc
No 407
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=49.86 E-value=1.3e+02 Score=23.88 Aligned_cols=39 Identities=10% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~ 137 (185)
..++.|+.++...+.....-...+..|+..+..+..++.
T Consensus 41 ~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~ 79 (160)
T PF13094_consen 41 HQLELLQEEIEKEEAALERDYEYLQELEKNAKALERERE 79 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666665555566655555555554443
No 408
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=49.82 E-value=62 Score=24.30 Aligned_cols=24 Identities=13% Similarity=0.476 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
...|..||.+|+.|.+.-...+..
T Consensus 32 ~~kL~~en~qlk~Ek~~~~~qvkn 55 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKAVAETQVKN 55 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455666666666655555544
No 409
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=49.79 E-value=3e+02 Score=28.11 Aligned_cols=76 Identities=21% Similarity=0.223 Sum_probs=47.5
Q ss_pred HHHHHHHhHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESAR-------------RSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 79 k~RR~lsNRESAR-------------RSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
++-|-++||..|. ++|.+-...+..|.....+|+.+...-...+..+..++......-.....+...
T Consensus 481 qqLReERdRl~aeLqlSa~liqqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~ 560 (739)
T PF07111_consen 481 QQLREERDRLDAELQLSARLIQQEVGRAREQGEAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAE 560 (739)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4556667776665 667777777777777777777777776666666666555554444444444555
Q ss_pred HHHHHHHHH
Q 029952 146 LRRRLSEIR 154 (185)
Q Consensus 146 Lr~rL~~l~ 154 (185)
|+..|..-.
T Consensus 561 lR~EL~~QQ 569 (739)
T PF07111_consen 561 LRRELTQQQ 569 (739)
T ss_pred HHHHHHHHH
Confidence 555444433
No 410
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=49.78 E-value=47 Score=20.71 Aligned_cols=24 Identities=21% Similarity=0.587 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.|.+|-..||.....|+.+|+.|+
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlr 28 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLR 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666665553
No 411
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=49.74 E-value=1.2e+02 Score=23.27 Aligned_cols=31 Identities=29% Similarity=0.360 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
+..+-|.+++..|+.+|..|..+++.++..+
T Consensus 15 EEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 15 EEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455677888999999999999988887655
No 412
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=49.63 E-value=71 Score=22.33 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
+++|+.++..|+.|...+...+..
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777777777666543
No 413
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.63 E-value=1.2e+02 Score=24.73 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~L 146 (185)
.+..|..|...|+.++.++
T Consensus 90 kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 90 KINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444544444444433
No 414
>KOG0483 consensus Transcription factor HEX, contains HOX and HALZ domains [Transcription]
Probab=49.50 E-value=32 Score=29.32 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.+|+.+...|+..+..|......|..|+..|++++..+......
T Consensus 108 kqlE~d~~~Lk~~~~~l~~~~~~Lq~e~~eL~~~~~~~~~~~~~ 151 (198)
T KOG0483|consen 108 KQLEKDYESLKRQLESLRSENDRLQSEVQELVAELSSLKREMQK 151 (198)
T ss_pred hhhhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhcc
Confidence 45666666777777777777778888888888887776665544
No 415
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=49.31 E-value=1.7e+02 Score=28.39 Aligned_cols=54 Identities=20% Similarity=0.381 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRM-----------ENRELSNRLRFALHH------------------------CQRVRTDNDRLRSE 142 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~-----------eN~~L~~~l~~L~~~------------------------~~~L~~EN~~Lrae 142 (185)
.+.+..|..++..|+. ||..|+.++...-+. ...++.||..|+.+
T Consensus 384 ~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kq 463 (488)
T PF06548_consen 384 SRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQ 463 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544 888888776554433 33457788888888
Q ss_pred HHHHHHHHH
Q 029952 143 HTILRRRLS 151 (185)
Q Consensus 143 ~~~Lr~rL~ 151 (185)
+..|+.+-.
T Consensus 464 iekLK~kh~ 472 (488)
T PF06548_consen 464 IEKLKRKHK 472 (488)
T ss_pred HHHHHHHHH
Confidence 888887543
No 416
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=48.92 E-value=1.8e+02 Score=28.05 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
.+|++-|...+.+....-.++...+..+.++...+..+=..|.-++..|..+-..|...+..-.
T Consensus 431 prYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I 494 (507)
T PF05600_consen 431 PRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEADI 494 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777888888888777777888888888887777777777777777777777777776665533
No 417
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=48.83 E-value=88 Score=23.07 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALH 127 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~ 127 (185)
.+|..|..++..-.+
T Consensus 5 ~qNk~L~~kL~~K~e 19 (76)
T PF11544_consen 5 KQNKELKKKLNDKQE 19 (76)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHH
Confidence 344444444433333
No 418
>PHA03065 Hypothetical protein; Provisional
Probab=48.80 E-value=2.1e+02 Score=27.43 Aligned_cols=93 Identities=17% Similarity=0.305 Sum_probs=54.2
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRM-------ENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~-------eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
.+++.-|.||+ ++-+..-.||+..++.|+..++.|.. .-..+..+++.+.- +-..+++..|+.-+.+
T Consensus 79 ~IK~~lReKRr----~a~~~~~kRK~~ei~~l~~~i~~ld~~d~~yEEikt~~~lrI~Kl~F--~~fLa~~~nlk~~l~~ 152 (438)
T PHA03065 79 PIKQSLREKRR----KASKNTIKRKREEIEKLEDDIKNLDVDDEMYEEIKTDLELKIDKLSF--QLFLANSNNLKRLLES 152 (438)
T ss_pred chhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH--HHHHcchhhHHHHHHH
Confidence 44454455554 33344448899999999987764322 22234444444433 3345667778877776
Q ss_pred HHHHH-------------HHHHHHHHHHHhhccCCCCCC
Q 029952 146 LRRRL-------------SEIRQILLYRQLQQVTSAWPC 171 (185)
Q Consensus 146 Lr~rL-------------~~l~~il~~~~~~~~~~~~~~ 171 (185)
.=.++ ..+.--...+.+...++.||-
T Consensus 153 ~L~~~~~~v~I~yCdgvDAEfvMC~~ak~~a~~~g~WPl 191 (438)
T PHA03065 153 ALARLGENVEIVYCDGVDAEFVMCARAKELAATTGEWPL 191 (438)
T ss_pred HHHhccCCceEEEECCcchhHHHHHHHHHHHhhcCCCce
Confidence 55555 233333444566778899995
No 419
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=48.79 E-value=62 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.189 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
+.-.|..+-+.|+.||..|..++.
T Consensus 58 ~y~~L~~EN~~Lk~Ena~L~~~l~ 81 (337)
T PRK14872 58 HALVLETENFLLKERIALLEERLK 81 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666655555543
No 420
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=48.77 E-value=1.3e+02 Score=31.83 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+|=..|..-+-.|+.-+..=+...+.+...+.....||..|+.....|.+++..++.+|+-.+-|
T Consensus 375 qqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQ 439 (1243)
T KOG0971|consen 375 QQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQ 439 (1243)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 421
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=48.72 E-value=2.8e+02 Score=27.40 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=50.7
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQ---KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 93 SR~RKk---~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+.++++ ..+.+.+..+...+.+-..|--++.-...++..+..+|.+++.+...|..++..+.+.|..
T Consensus 40 ~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~l~~ 109 (604)
T KOG3564|consen 40 FEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDMLKC 109 (604)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Confidence 444444 4445555666666666677777777888888888999999999999999999999888765
No 422
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=48.02 E-value=64 Score=28.62 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
..+..+|+.|+.++..+. .+..+...|++|+..|+.-
T Consensus 69 ~~~~~en~~Lk~~l~~~~----~~~~~~~~l~~EN~~Lr~l 105 (284)
T COG1792 69 KDLALENEELKKELAELE----QLLEEVESLEEENKRLKEL 105 (284)
T ss_pred HHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 334455666666554333 3344555666666655553
No 423
>PF14282 FlxA: FlxA-like protein
Probab=47.96 E-value=1.2e+02 Score=22.94 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 113 MENRELSNRLRFALHHCQRVRT----DNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~----EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
.....|..++..|.+++..|.. ....-......|...|..|..-|..++.+
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 424
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=47.93 E-value=1.2e+02 Score=23.15 Aligned_cols=44 Identities=18% Similarity=0.236 Sum_probs=22.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
-..-||.|+...-=++.+.+.|+.--..|..+...-+.+|+.+.
T Consensus 53 ~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~i~~le 96 (100)
T PF04568_consen 53 AFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKEIDELE 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777766555555555544444444444433444444433
No 425
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=47.92 E-value=3.4e+02 Score=28.11 Aligned_cols=33 Identities=15% Similarity=0.009 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.|.+.|..++...+..|+..+..+...++.+..
T Consensus 533 ~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~ 565 (961)
T KOG4673|consen 533 TRQKDYYSNSRALAAALEAQALAEQATNDEARS 565 (961)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 344556666666666666666666555555444
No 426
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=47.46 E-value=44 Score=24.60 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..|..||..|..+++.|..++
T Consensus 3 ~ei~eEn~~Lk~eiqkle~EL 23 (76)
T PF07334_consen 3 HEIQEENARLKEEIQKLEAEL 23 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456667777766665544433
No 427
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=47.44 E-value=2.6e+02 Score=26.91 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
-..+++.++..+..+...+..+...+...+..+..+-...+..+..++..|..+...+.-..
T Consensus 377 ~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~ 438 (569)
T PRK04778 377 AYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSN 438 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 35566666666666666666666666666667766666677777777777776666655543
No 428
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=47.02 E-value=2.4e+02 Score=26.13 Aligned_cols=67 Identities=13% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFA------------LHHCQRVRTDND-RLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L------------~~~~~~L~~EN~-~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+...+.+++.++..|+.+-.++..++..+ ..+...+..+.. .+..++.+++.+|..+..-|...+.+
T Consensus 234 ~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 234 KSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 429
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=46.98 E-value=58 Score=29.10 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
-.+.|+.++..|+.+|..|+.+++.+.
T Consensus 33 l~~~l~~~~~~lr~e~~~l~~~~~~~~ 59 (308)
T PF11382_consen 33 LIDSLEDQFDSLREENDELRAELDALQ 59 (308)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666655555444333
No 430
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=46.94 E-value=2e+02 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRL--------------RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L--------------~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
=|++|-++|+.++..- ..+.+.++.+++-|.+++....-||..|...+.+=+
T Consensus 390 MKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaer 455 (593)
T KOG4807|consen 390 MKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAER 455 (593)
T ss_pred HHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888888776532 234556777778888888888888876655444433
No 431
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.76 E-value=2.3e+02 Score=27.64 Aligned_cols=68 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH-------------------------------------------HHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQ-------------------------------------------KHLENLRNQLNR 110 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk-------------------------------------------~~l~eLe~qV~~ 110 (185)
+-+++|.-+++.|++|++--|---- +.+.+|+.++..
T Consensus 408 il~etreLqkq~ns~se~L~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~ 487 (521)
T KOG1937|consen 408 ILEETRELQKQENSESEALNRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYV 487 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 111 LRMENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 111 L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
.+-......++.+...+..+..||+.|..++
T Consensus 488 --E~~k~~l~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 488 --EEQKQYLKSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred --HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
No 432
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.74 E-value=3.2e+02 Score=27.46 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
..|+.+-..|..++..+...+..+..++..+...+..+...|..
T Consensus 244 ~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~ 287 (670)
T KOG0239|consen 244 QALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLES 287 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444443333333
No 433
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=46.69 E-value=56 Score=24.89 Aligned_cols=7 Identities=29% Similarity=0.624 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 029952 134 TDNDRLR 140 (185)
Q Consensus 134 ~EN~~Lr 140 (185)
.||+.|+
T Consensus 92 ~E~diLK 98 (121)
T PRK09413 92 MENELLK 98 (121)
T ss_pred HHHHHHH
Confidence 3443333
No 434
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=46.69 E-value=50 Score=26.03 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELS 119 (185)
Q Consensus 76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~ 119 (185)
|-.|..|+.++|+.+ .++.+++|+.+++.|+.+...+.
T Consensus 95 E~~Rs~~ke~~Ke~~------~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 95 EYWRSARKEAKKEEE------LQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHhhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 334555555544443 23456666777776666655543
No 435
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=46.58 E-value=1.3e+02 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMEN 115 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN 115 (185)
+.+.+|..+...+..++
T Consensus 115 ~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 115 QALAELAQRIEQLEQEA 131 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 436
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=46.46 E-value=1.8e+02 Score=26.83 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 029952 147 RRRLSEIR 154 (185)
Q Consensus 147 r~rL~~l~ 154 (185)
+..+....
T Consensus 74 ~~~Ik~r~ 81 (330)
T PF07851_consen 74 EEDIKERR 81 (330)
T ss_pred HHHHHHHH
Confidence 33333333
No 437
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.34 E-value=1.8e+02 Score=25.21 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
|+..++-+|.++..|+.--..+.+++.-|+++-..+...|+.--+..+-+.
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~~fS 182 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVAWFS 182 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 788999999999999999999999999999999999888877766666443
No 438
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=45.98 E-value=2.3e+02 Score=25.73 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+...|..+..+|...++.+..+...+-.+-..|+.+..++..++..+.+.+
T Consensus 41 ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~ 92 (294)
T COG1340 41 EKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEY 92 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444554444443
No 439
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.89 E-value=2.2e+02 Score=26.28 Aligned_cols=19 Identities=11% Similarity=0.100 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 137 DRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 137 ~~Lrae~~~Lr~rL~~l~~ 155 (185)
..++.+...+..++..+..
T Consensus 214 ~~~~~~l~~~~a~~~~l~~ 232 (498)
T TIGR03007 214 EAARLELNEAIAQRDALKR 232 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 440
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=45.45 E-value=2.7e+02 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.295 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 029952 139 LRSEHTILRR 148 (185)
Q Consensus 139 Lrae~~~Lr~ 148 (185)
|..++..++.
T Consensus 342 L~~eL~~~r~ 351 (522)
T PF05701_consen 342 LEAELNKTRS 351 (522)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 441
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.39 E-value=2.1e+02 Score=31.30 Aligned_cols=75 Identities=20% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.+|++.+ .--+++.+.|..+.+.|-.+-+.....+..|...+..-+..=..+.++++-|..|+..+.+.|..
T Consensus 1678 ~~r~~g~--------~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl~~I~~ 1749 (1758)
T KOG0994|consen 1678 EKRMEGS--------QAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVLDHINE 1749 (1758)
T ss_pred HHHhhcc--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHHHHHhh
Q ss_pred HHh
Q 029952 160 RQL 162 (185)
Q Consensus 160 ~~~ 162 (185)
+..
T Consensus 1750 rv~ 1752 (1758)
T KOG0994|consen 1750 RVL 1752 (1758)
T ss_pred hhh
No 442
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=45.30 E-value=19 Score=34.71 Aligned_cols=25 Identities=28% Similarity=0.574 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
++++|++|+++|+++...|..+++.
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k 56 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDK 56 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccch
Confidence 4555555555555555555444443
No 443
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.27 E-value=92 Score=27.19 Aligned_cols=41 Identities=34% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+++.++..|.+|..+++.|.+ ...+|.+|-.++..|..+|-
T Consensus 46 ql~r~R~~~~~Le~~l~~L~~----~A~~N~~lf~r~~~lq~~Ll 86 (218)
T COG3159 46 QLARLRNRIRELEEELAALME----NARANERLFYRLHALQLDLL 86 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444443332 23466666666666655554
No 444
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.21 E-value=2.1e+02 Score=28.02 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 115 NRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 115 N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
...+.+++..|.++.......=.++|...++|..|+
T Consensus 357 i~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~Ri 392 (508)
T KOG3091|consen 357 INAIGERVTELQKHHADAVAKIEEAKNRHVELSHRI 392 (508)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333333344444444443
No 445
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=45.19 E-value=1.5e+02 Score=23.37 Aligned_cols=44 Identities=14% Similarity=0.222 Sum_probs=18.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
|.+..|-.+---|.==+.++..||-+++.++.-+..|..+|..|
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkML 58 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKML 58 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333334444444444444444444444333
No 446
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=44.91 E-value=2.1e+02 Score=26.31 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.|..+...|+.+...+..++..+..
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~ 172 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVN 172 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555444443
No 447
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.84 E-value=2e+02 Score=24.63 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.++.++.++..|..+-..|..+..........+...=.........|...+..+..-+..+
T Consensus 46 ~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 46 QLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555544555555555555555555444433
No 448
>PF15058 Speriolin_N: Speriolin N terminus
Probab=44.63 E-value=31 Score=29.71 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+-+++++.+|..||+.||.++.-|+.
T Consensus 8 eGlrhqierLv~ENeeLKKlVrLirE 33 (200)
T PF15058_consen 8 EGLRHQIERLVRENEELKKLVRLIRE 33 (200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44667778888889888876655543
No 449
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=44.59 E-value=2e+02 Score=24.46 Aligned_cols=12 Identities=25% Similarity=0.291 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 029952 141 SEHTILRRRLSE 152 (185)
Q Consensus 141 ae~~~Lr~rL~~ 152 (185)
..+..|..+|..
T Consensus 176 ~~i~~L~~~lke 187 (237)
T PF00261_consen 176 EKIRDLEEKLKE 187 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 450
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=44.43 E-value=47 Score=24.14 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
+++.++.+...|+.||..|.-++..+.
T Consensus 43 ~l~~l~~~~~~l~~e~~~L~lE~~~l~ 69 (97)
T PF04999_consen 43 ELQQLEKEIDQLQEENERLRLEIATLS 69 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 366777777777777777776665553
No 451
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=44.22 E-value=35 Score=23.00 Aligned_cols=7 Identities=29% Similarity=0.615 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 029952 102 ENLRNQL 108 (185)
Q Consensus 102 ~eLe~qV 108 (185)
+.++.++
T Consensus 58 ~~le~e~ 64 (68)
T PF06305_consen 58 KKLEKEL 64 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 452
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=44.21 E-value=1.8e+02 Score=23.92 Aligned_cols=68 Identities=22% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR---------------------QILLYR 160 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~---------------------~il~~~ 160 (185)
++|..-+..| .+-+.+..+|..|......+...=..+..++...+..|..+. .||.+.
T Consensus 12 ~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~~~~~~~~~~~~~~~~~~v~~~eLL~YA 90 (188)
T PF10018_consen 12 DELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLPDQADEKLKSIPKAEKRPVDYEELLSYA 90 (188)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccCCCCHHHHHHHH
Q ss_pred -HhhccCCC--------------------------CC
Q 029952 161 -QLQQVTSA--------------------------WP 170 (185)
Q Consensus 161 -~~~~~~~~--------------------------~~ 170 (185)
-|..+|++ ||
T Consensus 91 ~rISk~t~~p~~~~~~~~~P~~~~~~~~~~~~~~PwP 127 (188)
T PF10018_consen 91 HRISKFTSAPPTFPSGSIAPNNWQPGPPSGDFFRPWP 127 (188)
T ss_pred HHHHHhcCCCCCCCCCCcCCcccccccccccccCCCC
No 453
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=44.21 E-value=1.8e+02 Score=24.03 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 91 RRSRMRKQKHLENLRNQLNR-LRM-------ENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 91 RRSR~RKk~~l~eLe~qV~~-L~~-------eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
=+-|.+|+-..+.+..++.. +.. ++.+|..--..+...-...+.-|..|+.++..|-.....+-
T Consensus 116 IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l~~~~~~~~ 187 (216)
T cd07599 116 IKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAKEEYEALNELLKSELPKLLALADEFL 187 (216)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34567777778888888877 543 34455554455555555667789999999988766555443
No 454
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=43.91 E-value=1e+02 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.341 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRE 117 (185)
Q Consensus 103 eLe~qV~~L~~eN~~ 117 (185)
.|+.++..|+.+...
T Consensus 51 ~LR~~~~~L~~~l~~ 65 (225)
T PF04340_consen 51 RLRERNRQLEEQLEE 65 (225)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 455
>PRK15396 murein lipoprotein; Provisional
Probab=43.76 E-value=1.3e+02 Score=22.10 Aligned_cols=31 Identities=19% Similarity=0.305 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
.++.|..+|..|..+-..|...+..++....
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~ 56 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQ 56 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544444333
No 456
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.72 E-value=1.4e+02 Score=29.29 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL----RSEHTILRRRLSEI 153 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L----rae~~~Lr~rL~~l 153 (185)
++++++++.-++.|..++..+..++......|..+..+|..+ +.|...|...|..+
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 467888999999999999999999999988888887777655 45666666665554
No 457
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.70 E-value=1.6e+02 Score=23.28 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENREL 118 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L 118 (185)
|.++..+++.++..+...+.+-.+|
T Consensus 112 R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 112 RADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 458
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=43.52 E-value=81 Score=27.21 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQR 131 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~ 131 (185)
+|..++..++.|...|+.-|..-..||..
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~E 76 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAE 76 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666666666555555543
No 459
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=43.42 E-value=74 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
+.|.++|..|+.+.+.|...+.
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~fs 23 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAFS 23 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666665555443
No 460
>PRK11519 tyrosine kinase; Provisional
Probab=43.23 E-value=3e+02 Score=27.29 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 89 SARRSRMRKQKHLENLRNQLNRLRM 113 (185)
Q Consensus 89 SARRSR~RKk~~l~eLe~qV~~L~~ 113 (185)
.|++...==.+++.+++.+++..+.
T Consensus 264 ~a~~a~~fL~~ql~~l~~~L~~aE~ 288 (719)
T PRK11519 264 EASKSLAFLAQQLPEVRSRLDVAEN 288 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444333333
No 461
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=43.15 E-value=1.4e+02 Score=28.72 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
.|+.+.+.+...+..+.....++..++..+..++..|...-+.|+.++..
T Consensus 443 qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 443 QKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666666677777766666666666666666655543
No 462
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.09 E-value=3.3e+02 Score=29.54 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+..+-..|+..+..+++|+..+.+
T Consensus 567 ~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 567 KLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555444444
No 463
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=43.08 E-value=1.2e+02 Score=21.64 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND--------RLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~--------~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.++.+..++..|...-..|...+..+...+..+..-+. .-...+..++.++..+...+.-
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~ 82 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQK 82 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777766666666666666665554443111 1233344455555555555443
No 464
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=43.07 E-value=1.1e+02 Score=21.29 Aligned_cols=30 Identities=3% Similarity=0.224 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
++..+..|+..+..+...+..+.+++..+.
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334333333333333333333333
No 465
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=43.05 E-value=3.2e+02 Score=26.52 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..|+.++..|..+..+.......+......|..+...++....+|++.-..+..++
T Consensus 106 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il 161 (779)
T PRK11091 106 VQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFL 161 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444333322222233333344444444433344444444444444
No 466
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=42.99 E-value=4.6e+02 Score=28.31 Aligned_cols=30 Identities=3% Similarity=-0.018 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
..-+.++++++..+...+.+-..+..++..
T Consensus 878 ~~a~~~le~ae~~l~~~~~e~~~~~~e~~~ 907 (1353)
T TIGR02680 878 AEQRARAARAESDAREAAEDAAEARAEAEE 907 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433333
No 467
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.95 E-value=2.2e+02 Score=24.45 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..+-+.|+.+++..+.||..+.
T Consensus 122 Qe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 122 QEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666665554
No 468
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=42.75 E-value=2.6e+02 Score=27.66 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
.+++.++..|+.+-.++..+...|.+.+.
T Consensus 381 ~~~~~~l~~le~~l~~~~~~~~~L~~~~~ 409 (656)
T PRK06975 381 HQLDSQFAQLDGKLADAQSAQQALEQQYQ 409 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 469
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=42.70 E-value=1.7e+02 Score=23.20 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRL-RFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l-~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
.+..+..++..|+..+..|..+. ..++.....|..==.-|-..+..++.||..+
T Consensus 56 ~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~L 110 (136)
T PF04871_consen 56 ELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEKRKKYKERLKEL 110 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 34555555555555555554332 2233333333222233334444455555444
No 470
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=42.63 E-value=92 Score=28.43 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT 134 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~ 134 (185)
|.+....+++|+.+...|..+|...+..+..|..++..+..
T Consensus 103 Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~ 143 (355)
T PF09766_consen 103 RKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKK 143 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
No 471
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=42.59 E-value=2.5e+02 Score=25.16 Aligned_cols=36 Identities=17% Similarity=0.263 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
....+......||.+...|+..+..+..-+..++..
T Consensus 203 ~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~ 238 (264)
T PF07246_consen 203 LHEELEARESGLRNESKWLEHELSDAKEDMIRLRND 238 (264)
T ss_pred HHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334445555666777777777777666655555443
No 472
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=42.37 E-value=4.4e+02 Score=27.82 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.1
Q ss_pred CcccCCCCCCCCC
Q 029952 12 EMMFGNPFPDFES 24 (185)
Q Consensus 12 ~~~~~~~~~~~~~ 24 (185)
.|-|-...|||-.
T Consensus 254 IP~LP~~~Pnf~~ 266 (980)
T KOG0980|consen 254 IPTLPEDAPNFLR 266 (980)
T ss_pred CCCCCCCCccccc
Confidence 3444444555543
No 473
>PLN02939 transferase, transferring glycosyl groups
Probab=42.25 E-value=3.2e+02 Score=28.91 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 125 ALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 125 L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|..++..|..||..|+..+..|+.+|..+..+=.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEE 257 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhH
Confidence 4566777888888888888888888877665433
No 474
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=42.19 E-value=1.6e+02 Score=22.77 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.|+.+-..-...+..+.+++..|.--|.+|-..+..|...|.
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444444444444444444444
No 475
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=42.18 E-value=2.1e+02 Score=24.22 Aligned_cols=37 Identities=14% Similarity=0.156 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
....+.+.+..+..||..|+.++..|-.....|...-
T Consensus 150 A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~ 186 (206)
T PF14988_consen 150 AKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARK 186 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888999999999998888877776666543
No 476
>PLN02678 seryl-tRNA synthetase
Probab=42.00 E-value=3.1e+02 Score=26.07 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVR---TDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~---~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..+-.|..+...+..+-..|+.+...+..++..+. .+-..|.++...|+.++..++..+...+.+
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555444321 223467777788888888888777776444
No 477
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=41.94 E-value=1.3e+02 Score=21.53 Aligned_cols=52 Identities=17% Similarity=0.455 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALH-HCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~-~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
++..+..|+.|-..+-..+..+.+ .|..| .-++++...-.|+.++..+++.+
T Consensus 9 irl~~arLrqeH~D~DaaInAmi~~~cD~L--~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 9 IRLTLARLRQEHADFDAAINAMIATGCDAL--RIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhCCcHH--HHHHHHHHHHhHHHHHHHHHHhh
Confidence 455556666666655555555443 23322 33467777777888888887654
No 478
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=41.85 E-value=2.6e+02 Score=25.09 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=33.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..|+++.+....=+.+.-.-..+..|++++..++.++.....+|..++.+.
T Consensus 145 ~~r~~l~d~I~kLk~k~P~s~kl~~LeqELvraEae~lvaEAqL~n~kR~~ 195 (271)
T PF13805_consen 145 DRRRKLQDEIAKLKYKDPQSPKLVVLEQELVRAEAENLVAEAQLSNIKRQK 195 (271)
T ss_dssp HHHHHHHHHHHHHHHH-TTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhHHHHHHHHhhHHH
Confidence 345566665543332222234788899999998888888888888777654
No 479
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=41.83 E-value=69 Score=22.52 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENREL 118 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L 118 (185)
.++..++.-+..|+.+-..+
T Consensus 3 ~qv~s~e~~i~FLq~eH~~t 22 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQT 22 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666777776666553
No 480
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=41.78 E-value=2.5e+02 Score=25.62 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRE---LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 105 e~qV~~L~~eN~~---L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
+.-++.|..|..+ |..++..|..+...+..+|...+..+..|..+|..|.....-+|
T Consensus 90 ~lml~RL~~EL~~Rk~L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a~~plq 149 (355)
T PF09766_consen 90 QLMLARLEFELEQRKRLEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKAAKPLQ 149 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
No 481
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=41.76 E-value=2.4e+02 Score=27.52 Aligned_cols=86 Identities=9% Similarity=0.178 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 75 IDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 75 ~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
++-++.-....++-.++....-+++.+++++++++.++..+=+=-..+....++...|..|=...+..+..|+..|....
T Consensus 167 ~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~ 246 (555)
T TIGR03545 167 EEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDK 246 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHHHH
Q 029952 155 QILLYR 160 (185)
Q Consensus 155 ~il~~~ 160 (185)
..+...
T Consensus 247 ~~~~~~ 252 (555)
T TIGR03545 247 KQLKAD 252 (555)
T ss_pred HHHHHH
No 482
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=41.68 E-value=98 Score=27.64 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
.+.|+.++..|+.+|..|+.+++.+..+......-...+-..+
T Consensus 34 ~~~l~~~~~~lr~e~~~l~~~~~~~~~~~~~~d~f~~~~~~~l 76 (308)
T PF11382_consen 34 IDSLEDQFDSLREENDELRAELDALQAQLNAADQFIAAVAPRL 76 (308)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 483
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=41.43 E-value=1.5e+02 Score=23.81 Aligned_cols=50 Identities=24% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
.+-+.....-+..|+.||.-|+..+-.+++-+..=...=..|+.++...+
T Consensus 77 eKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~~q 126 (126)
T PF13118_consen 77 EKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKIMQ 126 (126)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
No 484
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=41.38 E-value=1.4e+02 Score=21.87 Aligned_cols=56 Identities=16% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+.+..+..||..|+..-..|...+..+.+-...+.+.+ +.+..|..++..+.++|
T Consensus 10 r~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~----~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 10 RQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQS----AQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
No 485
>PRK11281 hypothetical protein; Provisional
Probab=41.29 E-value=4.7e+02 Score=27.94 Aligned_cols=89 Identities=15% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRK-----------QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTI 145 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RK-----------k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~ 145 (185)
||.+.|+-.|+.-...-+.+- ......|+.+...|+.+|..++.++........-+...=+.++.++..
T Consensus 159 ERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~ 238 (1113)
T PRK11281 159 ERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQR 238 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 029952 146 LRRRLSEIRQILLYRQLQQV 165 (185)
Q Consensus 146 Lr~rL~~l~~il~~~~~~~~ 165 (185)
+..++..|...+...-.+..
T Consensus 239 ~~~~~~~lq~~in~kr~~~s 258 (1113)
T PRK11281 239 LEHQLQLLQEAINSKRLTLS 258 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 486
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=41.23 E-value=3.1e+02 Score=29.07 Aligned_cols=67 Identities=19% Similarity=0.237 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 91 RRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 91 RRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
..........++..+.++.....+...+..+...++........+-..++.++..++.++..|...|
T Consensus 468 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L 534 (1201)
T PF12128_consen 468 KEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL 534 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 487
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=41.14 E-value=3.6e+02 Score=26.55 Aligned_cols=79 Identities=13% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 80 RRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRF--------ALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 80 ~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~--------L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.......++++++...=-..++.+|+.++...+.+-...+.+... ..+++..+..+=...+++....+.++.
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~ 261 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTAD 261 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH
Q 029952 152 EIRQILL 158 (185)
Q Consensus 152 ~l~~il~ 158 (185)
.+...+.
T Consensus 262 ~l~~~l~ 268 (754)
T TIGR01005 262 SVKKALQ 268 (754)
T ss_pred HHHHHHh
No 488
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=40.81 E-value=3.9e+02 Score=29.11 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRES---ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 73 ~~~deRk~RR~lsNRES---ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
...+.++.++-.-+|+- ++.+-....+.+.+.+.+...|..+++.+..++..+++....+.-+++.+-+...+|...
T Consensus 472 e~i~~lk~~~~el~~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 472 ETIEKLKSEESELQREQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q ss_pred HHHHH
Q 029952 150 LSEIR 154 (185)
Q Consensus 150 L~~l~ 154 (185)
..++.
T Consensus 552 ~~d~~ 556 (1317)
T KOG0612|consen 552 ELDMR 556 (1317)
T ss_pred hhhhh
No 489
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=40.77 E-value=3.8e+02 Score=26.71 Aligned_cols=126 Identities=18% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCcccccCCCCCCCCCCCCcchhHHHHHHHHHHhHHHHHHHHHHHH
Q 029952 19 FPDFESEFTPWDLPDPFPAPNQSPIPAVSSSSSDEPNQIQTNSNSGSDEPNQTVSVIDERKRRRMISNRESARRSRMRKQ 98 (185)
Q Consensus 19 ~~~~~~g~~~w~~~~~~~~~~~s~~~~~s~sg~~~~~~~~~~s~s~sd~~~~~~~~~deRk~RR~lsNRESARRSR~RKk 98 (185)
|..+..-+++-.+..+ ..+.|...+|+||. -+.+--+ ....+...+-+.-..+...+|.-+--+----+
T Consensus 535 s~~~~~~i~~~s~~~~---L~~~p~i~ksss~n-~p~~~~a-------~~ag~~s~l~~~v~qs~~~~~q~~~~~~fs~q 603 (673)
T KOG4378|consen 535 STPHHANITPQSSNPL---LKPQPLIAKSSSGN-LPAQMDA-------DWAGEFSELRDFVDQSCEKVEQELEYVTFSNQ 603 (673)
T ss_pred CCcccccCCCcccCcc---ccCCcccccCCCCC-Cchhhhh-------hhhhhhHHHHHHHHhhhhhHHhhcccchhHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRE--------LSNRLRFALHHCQRVR---TDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~--------L~~~l~~L~~~~~~L~---~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.....++.-+.+.+.+|.. |..+......+++.|. .||+.|++|+..||..=..|++
T Consensus 604 ~~q~~~~~tlddfq~~~hrdirNl~~ell~Qfhm~~~Ems~llery~eNe~l~aelk~lreenq~lr~ 671 (673)
T KOG4378|consen 604 RLQANKMTTLDDFQVENHRDIRNLALELLLQFHMFMREMSRLLERYNENEMLKAELKFLREENQTLRC 671 (673)
T ss_pred HHHHHhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhhhc
No 490
>PF14645 Chibby: Chibby family
Probab=40.74 E-value=1.5e+02 Score=22.99 Aligned_cols=47 Identities=13% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 111 LRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 111 L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
...++..|+.++..|.++..-|.-+++.|..-+++-+.+...+..-|
T Consensus 69 ~~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek~l 115 (116)
T PF14645_consen 69 DGEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEKEL 115 (116)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 491
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.66 E-value=2.6e+02 Score=24.80 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR----SEHTILRRRLSEIRQIL 157 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr----ae~~~Lr~rL~~l~~il 157 (185)
.+.+-..|...-..|..+...-+.. .|..++..++++...|..+...++..=...+ .....|..||..+..++
T Consensus 29 ~l~~~~~a~~~q~~k~~~~~~~r~~--~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s~~~~~~t~~~~ie~~l~~l~~~a 105 (247)
T COG3879 29 LLAGVMLAAVFQTSKGESVRRARDL--DLVKELRSLQKKVNTLAAEVEDLENKLDSVRRSVLTDDAALEDRLEKLRMLA 105 (247)
T ss_pred HHHHHHHHHHHhhccCcchhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHh
No 492
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=40.58 E-value=1.9e+02 Score=23.27 Aligned_cols=65 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
..-..+++.+-.+++.....-..|......+..+...+...-..|-.+...|..-.+.+...|.+
T Consensus 10 ~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~y 74 (157)
T PF04136_consen 10 QQYREECDQLLDQTDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQY 74 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
No 493
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=40.43 E-value=2.3e+02 Score=24.10 Aligned_cols=70 Identities=20% Similarity=0.142 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Q 029952 94 RMRKQKHLENLRNQLNRLRMEN----RELSNRLRFALHHCQRVRTDNDRLRSEHTILRR----RLSEIRQILLYRQLQ 163 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN----~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~----rL~~l~~il~~~~~~ 163 (185)
|.+|+--.+.+..+++.|...- .+|...-..+...-..-+.=|..|+.|+..|-. -+..+-+-+..+|+.
T Consensus 118 R~~KllDYD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~Lk~ELP~l~~~r~~~l~~~f~s~~~iQ~~ 195 (224)
T cd07591 118 RNHKLLDYDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQLKTELPQLVDLRIPYLDPSFEAFVKIQLR 195 (224)
T ss_pred HHhhHhhHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=40.43 E-value=3e+02 Score=25.40 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL-------SNRL----RFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L-------~~~l----~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
|++-..-|--+--|..=+...+.|+..+..|+.+-+-| ..++ +.|...++....||..|+.+..+|.++
T Consensus 33 riL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq 112 (389)
T KOG4687|consen 33 RILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQ 112 (389)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHH
Q ss_pred HHHHH
Q 029952 150 LSEIR 154 (185)
Q Consensus 150 L~~l~ 154 (185)
+.+|.
T Consensus 113 ~adLh 117 (389)
T KOG4687|consen 113 KADLH 117 (389)
T ss_pred HHHHh
No 495
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=40.32 E-value=2.3e+02 Score=24.10 Aligned_cols=61 Identities=21% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH-------------TILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~-------------~~Lr~rL~~l~~il~~~~ 161 (185)
+..|+..+..|..-.......+..+...+.....++..+|... ..|+..|..+...|....
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~~W~r~~S~~~~~~l~~~l~~~~~~L~~A~ 97 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGERWTRPPSSELNASLRKELQKYREYLEQAS 97 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCGSS-HHHHCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcHhhHHHHHHHHHHHHHHHHHHH
No 496
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=40.30 E-value=1.7e+02 Score=25.17 Aligned_cols=53 Identities=19% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRME----NRELSNRLRFALHHCQRVRTDNDRLRSEHTIL 146 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~e----N~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~L 146 (185)
|.+|+.-.+....+++.|+.. -.+|...-..+...-..-+.-|..|+.|+..|
T Consensus 113 R~hKllDYD~~r~~~~kL~~k~~kDe~KL~kAe~el~~Ak~~ye~lN~~Lk~ELP~L 169 (211)
T cd07611 113 RSRKLVDYDSARHHLEALQTSKRKDEGRIAKAEEEFQKAQKVFEEFNVDLQEELPSL 169 (211)
T ss_pred HHHHHhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=40.29 E-value=2.4e+02 Score=24.28 Aligned_cols=83 Identities=12% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQR---VRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~---L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
|..++.-+.=...-.+-.+-++|-++|+.--+.|..-|.-...+++...++... +..+=..|+.|...|...|..|+
T Consensus 113 ~~~~~aa~~i~~~~~~~~~~~~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ~~kLa~NL~sLN 192 (202)
T TIGR03513 113 NNFEGAAKTLAPMTDSYAQQKKYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEEMEKMAANLTSLN 192 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHH
Q 029952 155 QILLYR 160 (185)
Q Consensus 155 ~il~~~ 160 (185)
.|+..|
T Consensus 193 ~VYg~M 198 (202)
T TIGR03513 193 EVYGGM 198 (202)
T ss_pred HHHHHH
No 498
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=40.19 E-value=1.5e+02 Score=23.59 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+.+|..|+....+|..+--.=.+.+..+-.-|.+|+.+...|..-+.-|+.-|
T Consensus 13 e~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RL 65 (120)
T PF10482_consen 13 EKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRL 65 (120)
T ss_pred HHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH
No 499
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=40.18 E-value=2e+02 Score=23.30 Aligned_cols=61 Identities=18% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHC-QRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~-~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
++-++.|+.+++.|+.+-.++..++.....+- .+--+|-..-+.+...|..|+..|...|.
T Consensus 10 ~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 10 PAARDHLEAELARLRARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
No 500
>smart00150 SPEC Spectrin repeats.
Probab=40.06 E-value=1.2e+02 Score=20.52 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT----DNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~----EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
..++.+-.+...++.+-......+..+......|.. +...+...+..|..++..|...+..+.
T Consensus 31 ~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~ 97 (101)
T smart00150 31 ESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGHPDAEEIEERLEELNERWEELKELAEERR 97 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!