Query 029952
Match_columns 185
No_of_seqs 160 out of 723
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:40:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/029952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/029952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.6 4.6E-15 1.6E-19 100.8 6.5 52 78-129 1-52 (55)
2 2wt7_A Proto-oncogene protein 99.4 1.3E-12 4.6E-17 90.4 9.0 53 77-129 1-53 (63)
3 2dgc_A Protein (GCN4); basic d 99.3 3.5E-12 1.2E-16 88.7 6.8 51 79-129 10-60 (63)
4 1t2k_D Cyclic-AMP-dependent tr 99.3 1.2E-11 4.2E-16 84.8 8.9 50 78-127 1-50 (61)
5 1jnm_A Proto-oncogene C-JUN; B 99.2 2E-11 6.8E-16 84.1 7.5 49 79-127 2-50 (62)
6 1gd2_E Transcription factor PA 99.2 1E-10 3.5E-15 83.1 8.2 61 79-139 9-69 (70)
7 1ci6_A Transcription factor AT 99.1 5.7E-10 1.9E-14 77.3 8.0 57 78-141 2-58 (63)
8 1gu4_A CAAT/enhancer binding p 98.8 2E-08 7E-13 72.5 9.5 54 74-127 11-64 (78)
9 1hjb_A Ccaat/enhancer binding 98.8 2.4E-08 8.4E-13 73.5 9.7 52 73-124 10-61 (87)
10 3a5t_A Transcription factor MA 98.5 2.6E-09 9E-14 81.4 -3.9 69 74-156 33-101 (107)
11 2wt7_B Transcription factor MA 98.2 1.4E-05 4.9E-10 59.1 9.7 66 74-153 23-88 (90)
12 2oqq_A Transcription factor HY 97.3 0.00072 2.5E-08 43.4 6.1 38 98-142 2-39 (42)
13 2jee_A YIIU; FTSZ, septum, coi 97.0 0.0048 1.6E-07 44.7 9.1 57 100-156 21-77 (81)
14 1skn_P DNA-binding domain of S 96.3 0.0019 6.5E-08 47.8 2.6 33 73-105 57-89 (92)
15 1deb_A APC protein, adenomatou 96.0 0.029 9.8E-07 37.5 6.9 47 101-147 5-51 (54)
16 3hnw_A Uncharacterized protein 96.0 0.095 3.2E-06 40.9 11.0 62 96-157 72-133 (138)
17 3s9g_A Protein hexim1; cyclin 95.7 0.064 2.2E-06 40.3 8.6 50 99-148 37-93 (104)
18 2jee_A YIIU; FTSZ, septum, coi 95.7 0.17 5.7E-06 36.6 10.5 57 99-155 6-62 (81)
19 2w6a_A ARF GTPase-activating p 95.1 0.11 3.6E-06 35.8 7.4 41 101-141 22-62 (63)
20 1hjb_A Ccaat/enhancer binding 94.6 0.12 4E-06 37.7 6.9 39 122-160 38-76 (87)
21 1t2k_D Cyclic-AMP-dependent tr 94.3 0.14 4.6E-06 34.3 6.3 39 120-158 22-60 (61)
22 1ci6_A Transcription factor AT 94.2 0.18 6.3E-06 34.2 6.9 40 119-158 22-61 (63)
23 2wt7_A Proto-oncogene protein 94.1 0.86 2.9E-05 30.7 10.3 39 120-158 23-61 (63)
24 1go4_E MAD1 (mitotic arrest de 93.8 0.22 7.5E-06 37.2 7.0 28 100-127 13-40 (100)
25 3vmx_A Voltage-gated hydrogen 93.7 0.26 8.7E-06 32.4 6.4 37 105-141 3-39 (48)
26 3hnw_A Uncharacterized protein 93.5 1.1 3.6E-05 34.9 10.8 58 103-160 72-129 (138)
27 1gu4_A CAAT/enhancer binding p 93.3 0.14 4.8E-06 36.5 5.1 37 122-158 38-74 (78)
28 3m48_A General control protein 93.0 0.12 4.1E-06 31.5 3.7 27 101-127 2-28 (33)
29 3iv1_A Tumor susceptibility ge 92.9 1.1 3.8E-05 32.0 9.3 61 97-157 16-76 (78)
30 1jnm_A Proto-oncogene C-JUN; B 92.6 0.16 5.5E-06 34.1 4.4 39 120-158 22-60 (62)
31 2c9l_Y EB1, zebra, BZLF1 trans 92.4 0.91 3.1E-05 30.8 7.8 37 82-118 5-41 (63)
32 3cve_A Homer protein homolog 1 92.3 1.1 3.6E-05 31.7 8.4 48 102-149 3-50 (72)
33 2oxj_A Hybrid alpha/beta pepti 92.3 0.2 7E-06 30.6 4.1 28 100-127 2-29 (34)
34 1kd8_B GABH BLL, GCN4 acid bas 92.1 0.3 1E-05 30.2 4.7 29 100-128 2-30 (36)
35 3oja_B Anopheles plasmodium-re 92.1 1.5 5.3E-05 39.4 11.5 57 99-155 509-565 (597)
36 3cvf_A Homer-3, homer protein 92.1 0.5 1.7E-05 33.9 6.6 50 101-150 8-57 (79)
37 3a2a_A Voltage-gated hydrogen 91.6 0.58 2E-05 31.6 6.1 37 105-141 10-46 (58)
38 3a7p_A Autophagy protein 16; c 91.6 2.5 8.5E-05 33.7 10.8 46 99-144 89-134 (152)
39 3c3f_A Alpha/beta peptide with 90.8 0.37 1.3E-05 29.4 4.1 28 100-127 2-29 (34)
40 2v66_B Nuclear distribution pr 90.6 2.7 9.4E-05 31.7 9.8 53 101-153 37-89 (111)
41 3s4r_A Vimentin; alpha-helix, 90.6 2.9 0.0001 30.2 9.6 21 106-126 23-43 (93)
42 1kd8_A GABH AIV, GCN4 acid bas 90.4 0.33 1.1E-05 30.0 3.7 29 100-128 2-30 (36)
43 2eqb_B RAB guanine nucleotide 90.3 2.5 8.4E-05 31.4 9.1 47 102-148 15-61 (97)
44 3c3g_A Alpha/beta peptide with 90.1 0.46 1.6E-05 28.9 4.1 27 101-127 2-28 (33)
45 2dfs_A Myosin-5A; myosin-V, in 90.1 5.2 0.00018 40.1 14.0 27 99-125 984-1010(1080)
46 3he5_A Synzip1; heterodimeric 89.7 1.7 5.9E-05 27.9 6.8 44 100-150 4-47 (49)
47 1gd2_E Transcription factor PA 89.7 0.69 2.4E-05 32.3 5.4 31 122-152 38-68 (70)
48 3ra3_A P1C; coiled coil domain 89.5 0.46 1.6E-05 27.4 3.5 25 130-154 3-27 (28)
49 2bni_A General control protein 89.5 0.49 1.7E-05 28.9 3.9 28 100-127 2-29 (34)
50 3mq7_A Bone marrow stromal ant 89.4 2.4 8.1E-05 32.6 8.6 51 102-152 60-110 (121)
51 3a7p_A Autophagy protein 16; c 89.4 7 0.00024 31.1 12.7 60 93-152 76-135 (152)
52 1uo4_A General control protein 89.2 0.54 1.8E-05 28.8 3.9 28 100-127 2-29 (34)
53 2lw1_A ABC transporter ATP-bin 89.2 3.2 0.00011 29.4 8.8 59 98-156 21-85 (89)
54 2hy6_A General control protein 89.1 0.54 1.9E-05 28.7 3.9 28 100-127 2-29 (34)
55 3efg_A Protein SLYX homolog; x 89.1 1.3 4.6E-05 31.3 6.6 48 100-154 15-62 (78)
56 2v71_A Nuclear distribution pr 88.9 5.7 0.00019 32.5 11.2 21 134-154 95-115 (189)
57 2kz5_A Transcription factor NF 88.3 0.033 1.1E-06 41.1 -2.3 24 75-98 63-86 (91)
58 2wq1_A General control protein 88.2 0.76 2.6E-05 27.9 4.1 27 101-127 2-28 (33)
59 2zxx_A Geminin; coiled-coil, c 88.0 1.3 4.6E-05 31.7 6.0 35 113-147 34-68 (79)
60 2dgc_A Protein (GCN4); basic d 87.8 0.8 2.7E-05 31.1 4.5 32 120-151 30-61 (63)
61 1t6f_A Geminin; coiled-coil, c 87.5 1.3 4.3E-05 27.5 4.8 29 112-140 6-34 (37)
62 1p9i_A Cortexillin I/GCN4 hybr 87.4 0.73 2.5E-05 27.1 3.5 23 128-150 7-29 (31)
63 2xdj_A Uncharacterized protein 87.0 5.8 0.0002 28.3 8.9 37 101-137 22-58 (83)
64 3m9b_A Proteasome-associated A 86.9 1 3.5E-05 38.6 5.7 40 99-138 54-93 (251)
65 3oja_B Anopheles plasmodium-re 86.6 5.4 0.00019 35.8 10.7 57 102-158 505-561 (597)
66 3jsv_C NF-kappa-B essential mo 86.0 8.5 0.00029 28.3 10.7 72 84-155 8-82 (94)
67 1fmh_A General control protein 86.0 1.7 5.9E-05 25.8 4.7 29 101-129 3-31 (33)
68 3s9g_A Protein hexim1; cyclin 85.9 5.8 0.0002 29.6 8.6 28 98-125 64-91 (104)
69 2v4h_A NF-kappa-B essential mo 85.8 9.7 0.00033 28.8 12.8 71 84-154 30-103 (110)
70 3swf_A CGMP-gated cation chann 85.5 3.5 0.00012 29.2 7.0 49 102-160 3-51 (74)
71 3m91_A Proteasome-associated A 85.4 4.5 0.00015 26.6 7.0 29 101-129 11-39 (51)
72 2w83_C C-JUN-amino-terminal ki 85.3 8.1 0.00028 27.5 10.6 57 102-158 5-61 (77)
73 1i84_S Smooth muscle myosin he 85.3 8.9 0.00031 38.4 12.4 14 136-149 922-935 (1184)
74 3swy_A Cyclic nucleotide-gated 85.2 5.7 0.0002 25.6 7.4 43 103-155 2-44 (46)
75 1ic2_A Tropomyosin alpha chain 85.1 7.6 0.00026 27.0 8.9 53 99-151 20-72 (81)
76 3u1c_A Tropomyosin alpha-1 cha 85.0 9.2 0.00031 27.8 10.6 60 96-155 20-79 (101)
77 1go4_E MAD1 (mitotic arrest de 84.9 2.1 7.1E-05 31.9 5.8 33 120-152 12-44 (100)
78 2yy0_A C-MYC-binding protein; 84.7 2 6.9E-05 28.3 5.1 17 106-122 19-35 (53)
79 3m91_A Proteasome-associated A 84.1 6 0.0002 26.0 7.2 17 106-122 9-25 (51)
80 2wvr_A Geminin; DNA replicatio 84.1 11 0.00036 31.5 10.3 43 113-159 115-157 (209)
81 3oja_A Leucine-rich immune mol 83.9 16 0.00054 32.1 12.2 40 121-160 436-475 (487)
82 4etp_A Kinesin-like protein KA 83.8 4.6 0.00016 36.0 8.8 50 98-147 9-58 (403)
83 1wlq_A Geminin; coiled-coil; 2 83.8 10 0.00035 27.4 9.3 43 112-158 37-79 (83)
84 3he5_A Synzip1; heterodimeric 83.6 6.1 0.00021 25.3 6.8 18 127-144 10-27 (49)
85 3mq7_A Bone marrow stromal ant 83.5 7.7 0.00026 29.8 8.6 27 129-155 73-99 (121)
86 2dfs_A Myosin-5A; myosin-V, in 83.4 20 0.00068 35.9 13.9 26 96-121 988-1013(1080)
87 4h22_A Leucine-rich repeat fli 83.2 12 0.00042 27.9 10.5 13 74-86 6-18 (103)
88 2yy0_A C-MYC-binding protein; 83.1 2.8 9.6E-05 27.6 5.3 25 131-155 23-47 (53)
89 2wt7_B Transcription factor MA 83.0 11 0.00039 27.3 10.0 31 129-159 50-80 (90)
90 1i84_S Smooth muscle myosin he 82.8 11 0.00038 37.7 11.9 32 127-158 906-937 (1184)
91 2r2v_A GCN4 leucine zipper; co 82.5 2.1 7.1E-05 26.1 4.1 28 100-127 2-29 (34)
92 1nkp_B MAX protein, MYC proto- 82.4 1.9 6.5E-05 30.1 4.5 18 133-150 60-77 (83)
93 3u06_A Protein claret segregat 82.3 4.5 0.00015 36.3 8.1 48 100-147 11-58 (412)
94 2xdj_A Uncharacterized protein 81.9 12 0.0004 26.7 10.1 36 118-153 25-60 (83)
95 1dh3_A Transcription factor CR 81.8 1.6 5.5E-05 28.8 3.8 29 121-149 23-51 (55)
96 3ra3_B P2F; coiled coil domain 81.6 1.5 5E-05 25.3 3.0 21 133-153 6-26 (28)
97 1dip_A Delta-sleep-inducing pe 81.6 0.93 3.2E-05 32.3 2.6 25 117-141 19-43 (78)
98 3u59_A Tropomyosin beta chain; 81.4 13 0.00044 26.8 10.6 59 96-154 20-78 (101)
99 2oxj_A Hybrid alpha/beta pepti 81.2 2.9 0.0001 25.5 4.4 28 123-150 4-31 (34)
100 3efg_A Protein SLYX homolog; x 80.7 5.4 0.00018 28.1 6.4 31 130-160 31-61 (78)
101 3he5_B Synzip2; heterodimeric 80.7 9.2 0.00031 24.7 7.0 39 116-154 6-44 (52)
102 3i00_A HIP-I, huntingtin-inter 80.1 17 0.00059 27.5 9.6 48 94-148 35-82 (120)
103 1gk6_A Vimentin; intermediate 79.9 9.9 0.00034 25.1 7.2 49 102-150 3-51 (59)
104 2wuj_A Septum site-determining 79.5 1.7 6E-05 28.7 3.3 24 126-149 33-56 (57)
105 1nlw_A MAD protein, MAX dimeri 79.4 4.3 0.00015 28.5 5.6 21 131-151 58-78 (80)
106 3m48_A General control protein 79.3 2.4 8.1E-05 25.7 3.5 27 124-150 4-30 (33)
107 3m9b_A Proteasome-associated A 79.2 2.5 8.7E-05 36.1 5.1 32 129-160 63-94 (251)
108 1gk7_A Vimentin; intermediate 79.2 3.1 0.00011 25.8 4.2 28 117-144 10-37 (39)
109 3na7_A HP0958; flagellar bioge 79.0 20 0.00069 29.5 10.5 35 94-128 48-82 (256)
110 3bas_A Myosin heavy chain, str 77.9 16 0.00055 25.9 10.3 53 99-151 35-87 (89)
111 2v71_A Nuclear distribution pr 77.9 27 0.00092 28.5 14.5 54 101-154 90-143 (189)
112 3bas_A Myosin heavy chain, str 77.8 16 0.00055 25.9 12.5 58 100-157 29-86 (89)
113 1nkp_B MAX protein, MYC proto- 77.2 6.8 0.00023 27.1 6.1 30 128-157 48-77 (83)
114 1nkp_A C-MYC, MYC proto-oncoge 76.7 12 0.00041 26.5 7.4 18 135-152 67-84 (88)
115 3s4r_A Vimentin; alpha-helix, 75.8 6.7 0.00023 28.3 5.8 53 102-154 26-90 (93)
116 3oja_A Leucine-rich immune mol 75.6 41 0.0014 29.4 12.4 54 103-156 425-478 (487)
117 4emc_A Monopolin complex subun 75.5 16 0.00056 30.0 8.7 23 102-124 16-38 (190)
118 3o0z_A RHO-associated protein 75.5 30 0.001 27.8 14.1 61 87-154 78-138 (168)
119 2j5u_A MREC protein; bacterial 75.4 1.4 4.9E-05 36.9 2.5 15 111-125 24-38 (255)
120 1p9i_A Cortexillin I/GCN4 hybr 74.9 4.8 0.00016 23.6 3.9 27 102-128 2-28 (31)
121 3ra3_B P2F; coiled coil domain 74.7 2.7 9.4E-05 24.1 2.7 24 109-132 3-26 (28)
122 3c3f_A Alpha/beta peptide with 74.6 5.9 0.0002 24.1 4.4 28 123-150 4-31 (34)
123 3m0d_C TNF receptor-associated 74.6 17 0.00057 24.4 9.2 60 97-156 4-63 (65)
124 2xv5_A Lamin-A/C; structural p 74.6 19 0.00064 25.1 8.2 51 101-151 7-57 (74)
125 1nkp_A C-MYC, MYC proto-oncoge 74.6 7.6 0.00026 27.6 5.8 19 129-147 68-86 (88)
126 3u1c_A Tropomyosin alpha-1 cha 74.2 22 0.00076 25.7 12.9 60 95-154 40-99 (101)
127 3vkg_A Dynein heavy chain, cyt 74.2 34 0.0011 38.5 13.1 72 82-153 2018-2103(3245)
128 3ol1_A Vimentin; structural ge 74.2 24 0.00084 26.2 11.2 40 118-157 67-106 (119)
129 1nlw_A MAD protein, MAX dimeri 74.1 4.7 0.00016 28.3 4.5 23 99-121 47-69 (80)
130 1kd8_B GABH BLL, GCN4 acid bas 73.9 7.3 0.00025 24.0 4.7 29 124-152 5-33 (36)
131 3c3g_A Alpha/beta peptide with 73.9 6.4 0.00022 23.8 4.4 28 123-150 3-30 (33)
132 1ic2_A Tropomyosin alpha chain 73.8 19 0.00066 24.9 9.5 20 135-154 35-54 (81)
133 4etp_A Kinesin-like protein KA 73.8 13 0.00046 33.0 8.5 34 100-133 4-37 (403)
134 1am9_A Srebp-1A, protein (ster 73.8 5.9 0.0002 27.7 5.0 68 81-152 5-75 (82)
135 1joc_A EEA1, early endosomal a 73.6 26 0.00088 26.2 9.5 41 100-140 12-52 (125)
136 1am9_A Srebp-1A, protein (ster 73.3 9.3 0.00032 26.7 6.0 25 99-123 50-74 (82)
137 3o0z_A RHO-associated protein 73.3 34 0.0012 27.5 12.4 48 93-142 30-77 (168)
138 1uii_A Geminin; human, DNA rep 72.9 24 0.0008 25.4 8.6 29 113-141 46-74 (83)
139 2oqq_A Transcription factor HY 72.8 15 0.00053 23.3 6.4 20 101-120 19-38 (42)
140 3ra3_A P1C; coiled coil domain 72.5 2.6 9.1E-05 24.2 2.3 24 109-132 3-26 (28)
141 2wuj_A Septum site-determining 72.3 4.3 0.00015 26.8 3.7 29 99-127 27-55 (57)
142 1jcd_A Major outer membrane li 71.7 18 0.00063 23.7 7.5 28 100-127 5-32 (52)
143 1dip_A Delta-sleep-inducing pe 71.6 4.7 0.00016 28.7 4.0 26 102-127 18-43 (78)
144 3a7o_A Autophagy protein 16; c 71.5 22 0.00074 25.1 7.3 49 100-148 26-74 (75)
145 3nmd_A CGMP dependent protein 71.4 19 0.00064 25.3 7.0 27 97-123 38-64 (72)
146 1a93_B MAX protein, coiled coi 70.5 7.6 0.00026 23.6 4.2 12 131-142 18-29 (34)
147 2oa5_A Hypothetical protein BQ 70.0 2.6 9E-05 31.9 2.5 27 98-124 7-33 (110)
148 3vkg_A Dynein heavy chain, cyt 69.9 30 0.001 38.8 11.5 55 105-159 2027-2081(3245)
149 3tnu_B Keratin, type II cytosk 69.6 13 0.00045 27.8 6.4 27 101-127 45-71 (129)
150 3na7_A HP0958; flagellar bioge 69.6 45 0.0016 27.3 13.5 24 102-125 93-116 (256)
151 2ocy_A RAB guanine nucleotide 69.5 23 0.0008 28.0 8.1 31 128-158 109-139 (154)
152 1deb_A APC protein, adenomatou 69.0 13 0.00046 24.5 5.5 32 123-154 6-37 (54)
153 2j5u_A MREC protein; bacterial 68.3 2.3 8E-05 35.6 2.1 36 102-141 22-57 (255)
154 2ve7_C Kinetochore protein NUF 68.2 3.7 0.00013 34.5 3.3 40 74-113 116-155 (250)
155 1wle_A Seryl-tRNA synthetase; 68.1 44 0.0015 30.7 10.8 30 131-160 120-149 (501)
156 2bni_A General control protein 68.0 6.3 0.00022 24.0 3.4 28 123-150 4-31 (34)
157 1ses_A Seryl-tRNA synthetase; 67.7 56 0.0019 29.0 11.2 62 99-160 28-97 (421)
158 3w03_C DNA repair protein XRCC 67.5 21 0.0007 29.1 7.6 19 132-150 164-182 (184)
159 3nmd_A CGMP dependent protein 67.1 17 0.00057 25.5 6.0 23 122-144 42-64 (72)
160 3e98_A GAF domain of unknown f 66.9 17 0.00057 30.3 7.2 56 101-160 67-125 (252)
161 1joc_A EEA1, early endosomal a 66.4 19 0.00064 27.0 6.7 26 127-152 11-36 (125)
162 1g6u_A Domain swapped dimer; d 66.1 16 0.00055 23.2 5.2 27 127-153 20-46 (48)
163 2efr_A General control protein 65.9 47 0.0016 26.1 10.3 76 83-158 54-129 (155)
164 4emc_A Monopolin complex subun 65.9 54 0.0019 26.8 10.3 41 100-140 21-61 (190)
165 2oto_A M protein; helical coil 65.7 43 0.0015 25.6 9.6 32 101-132 52-83 (155)
166 2ve7_C Kinetochore protein NUF 65.6 12 0.0004 31.4 6.0 38 117-154 145-182 (250)
167 1wt6_A Myotonin-protein kinase 65.4 35 0.0012 24.4 7.9 57 86-152 14-70 (81)
168 1uo4_A General control protein 65.3 7.3 0.00025 23.7 3.3 27 123-149 4-30 (34)
169 1fmh_A General control protein 65.3 12 0.00041 22.2 4.2 27 123-149 4-30 (33)
170 1kd8_A GABH AIV, GCN4 acid bas 65.2 12 0.0004 23.0 4.3 26 126-151 7-32 (36)
171 3mq9_A Bone marrow stromal ant 65.2 62 0.0021 28.1 10.9 15 139-153 448-462 (471)
172 3qne_A Seryl-tRNA synthetase, 64.9 82 0.0028 28.9 11.9 34 130-163 74-107 (485)
173 3he4_A Synzip6; heterodimeric 64.2 3.4 0.00011 27.2 1.8 25 130-154 27-51 (56)
174 2hy6_A General control protein 63.8 14 0.00047 22.5 4.4 27 124-150 5-31 (34)
175 3q0x_A Centriole protein; cent 63.7 60 0.002 27.1 9.9 30 100-129 179-208 (228)
176 3cvf_A Homer-3, homer protein 63.7 28 0.00097 24.6 6.8 12 111-122 25-36 (79)
177 3qh9_A Liprin-beta-2; coiled-c 63.4 38 0.0013 24.2 8.9 24 99-122 26-49 (81)
178 3u59_A Tropomyosin beta chain; 63.2 39 0.0013 24.2 12.4 58 96-153 41-98 (101)
179 3tnu_B Keratin, type II cytosk 62.9 44 0.0015 24.8 10.3 18 127-144 82-99 (129)
180 3he5_B Synzip2; heterodimeric 62.3 28 0.00097 22.4 6.3 26 105-130 9-34 (52)
181 2eqb_B RAB guanine nucleotide 62.1 44 0.0015 24.5 9.8 19 108-126 42-60 (97)
182 1wle_A Seryl-tRNA synthetase; 61.3 1E+02 0.0034 28.3 13.6 65 99-163 70-145 (501)
183 1j1d_B Troponin T, TNT; THIN f 61.1 48 0.0016 24.6 9.0 45 109-153 45-89 (106)
184 3ghg_A Fibrinogen alpha chain; 60.6 1E+02 0.0034 29.1 11.6 56 117-175 114-169 (562)
185 1zme_C Proline utilization tra 60.5 10 0.00035 24.6 3.8 25 98-122 43-67 (70)
186 3u06_A Protein claret segregat 60.5 36 0.0012 30.4 8.5 35 102-143 6-40 (412)
187 1ytz_T Troponin T; muscle, THI 60.4 33 0.0011 25.5 6.9 62 92-153 21-89 (107)
188 3q8t_A Beclin-1; autophagy, AT 60.3 45 0.0015 24.0 13.1 64 98-161 24-87 (96)
189 2fxo_A Myosin heavy chain, car 60.1 51 0.0017 24.6 14.2 58 102-159 65-122 (129)
190 1x8y_A Lamin A/C; structural p 59.1 43 0.0015 23.5 10.5 54 98-151 27-80 (86)
191 1ik9_A DNA repair protein XRCC 59.1 73 0.0025 26.0 10.5 31 103-133 136-166 (213)
192 3w03_C DNA repair protein XRCC 58.3 17 0.00059 29.5 5.5 29 99-127 152-180 (184)
193 2v66_B Nuclear distribution pr 58.3 56 0.0019 24.5 14.1 43 99-141 56-98 (111)
194 1lwu_C Fibrinogen gamma chain; 57.5 34 0.0012 29.9 7.6 26 133-158 25-50 (323)
195 4b4t_K 26S protease regulatory 56.6 21 0.00071 32.0 6.3 34 124-157 53-86 (428)
196 3i00_A HIP-I, huntingtin-inter 56.5 61 0.0021 24.4 11.3 53 100-152 16-79 (120)
197 3qne_A Seryl-tRNA synthetase, 55.8 71 0.0024 29.3 9.8 64 100-163 34-100 (485)
198 1jcd_A Major outer membrane li 55.7 40 0.0014 22.0 7.7 46 106-151 4-49 (52)
199 2i1j_A Moesin; FERM, coiled-co 54.7 11 0.00037 35.1 4.2 62 99-160 335-396 (575)
200 1hlo_A Protein (transcription 52.6 31 0.0011 23.6 5.4 61 88-148 18-78 (80)
201 1fmh_B General control protein 52.6 34 0.0011 20.2 5.0 26 103-128 5-30 (33)
202 2e7s_A RAB guanine nucleotide 51.3 54 0.0018 25.4 7.0 10 111-120 44-53 (135)
203 3plt_A Sphingolipid long chain 51.2 51 0.0018 27.7 7.4 62 81-147 96-158 (234)
204 2w6b_A RHO guanine nucleotide 51.2 49 0.0017 22.1 5.8 22 102-123 13-34 (56)
205 4ati_A MITF, microphthalmia-as 51.0 45 0.0015 24.7 6.4 21 135-155 92-112 (118)
206 2r2v_A GCN4 leucine zipper; co 50.5 34 0.0012 20.7 4.5 28 124-151 5-32 (34)
207 2lz1_A Nuclear factor erythroi 50.3 0.23 7.8E-06 36.5 -6.2 22 77-98 65-86 (90)
208 3iox_A AGI/II, PA; alpha helix 49.2 62 0.0021 30.1 8.2 24 104-127 32-55 (497)
209 3trt_A Vimentin; cytoskeleton, 49.1 57 0.002 21.8 7.4 51 82-135 21-71 (77)
210 2dq0_A Seryl-tRNA synthetase; 48.7 73 0.0025 28.7 8.6 33 131-163 73-105 (455)
211 1zxa_A CGMP-dependent protein 48.4 41 0.0014 23.1 5.3 28 97-124 23-50 (67)
212 3ghg_A Fibrinogen alpha chain; 48.4 82 0.0028 29.7 8.9 37 103-139 114-150 (562)
213 3tnu_A Keratin, type I cytoske 48.3 82 0.0028 23.4 9.8 6 74-79 40-45 (131)
214 3bbp_D GRIP and coiled-coil do 48.2 20 0.00067 25.1 3.7 15 136-150 45-59 (71)
215 3iox_A AGI/II, PA; alpha helix 48.0 1E+02 0.0035 28.7 9.5 31 101-131 36-66 (497)
216 4ath_A MITF, microphthalmia-as 47.8 48 0.0017 23.7 5.8 27 100-126 50-76 (83)
217 2wq1_A General control protein 47.8 37 0.0013 20.4 4.4 24 125-148 5-28 (33)
218 2w83_C C-JUN-amino-terminal ki 47.3 73 0.0025 22.5 9.8 48 101-148 11-58 (77)
219 3he4_A Synzip6; heterodimeric 47.2 57 0.0019 21.2 5.7 33 102-134 20-52 (56)
220 3q0x_A Centriole protein; cent 46.6 1E+02 0.0035 25.6 8.6 41 119-159 177-217 (228)
221 2zvf_A Alanyl-tRNA synthetase; 46.3 20 0.00069 27.2 3.9 12 107-118 33-44 (171)
222 1deq_A Fibrinogen (alpha chain 46.3 1.4E+02 0.005 26.8 9.9 41 117-157 117-157 (390)
223 2v4h_A NF-kappa-B essential mo 46.1 92 0.0031 23.4 10.1 46 107-152 63-108 (110)
224 1ik9_A DNA repair protein XRCC 46.1 1.2E+02 0.0041 24.7 9.1 31 97-127 137-167 (213)
225 2er8_A Regulatory protein Leu3 46.0 12 0.00041 24.5 2.3 21 98-118 48-68 (72)
226 2ve7_A Kinetochore protein HEC 45.6 28 0.00097 29.9 5.2 31 105-135 184-214 (315)
227 2akf_A Coronin-1A; coiled coil 45.5 46 0.0016 19.7 4.8 24 104-127 4-27 (32)
228 1ses_A Seryl-tRNA synthetase; 45.4 72 0.0025 28.3 8.0 22 138-159 68-89 (421)
229 2ve7_A Kinetochore protein HEC 45.3 47 0.0016 28.4 6.5 29 99-127 185-213 (315)
230 1ez3_A Syntaxin-1A; three heli 44.8 62 0.0021 23.1 6.3 25 138-162 92-116 (127)
231 1wt6_A Myotonin-protein kinase 44.8 83 0.0028 22.4 10.4 38 96-133 35-72 (81)
232 3q8t_A Beclin-1; autophagy, AT 43.1 89 0.003 22.4 12.9 60 101-160 20-79 (96)
233 1m1j_B Fibrinogen beta chain; 42.8 1.8E+02 0.0063 26.6 10.3 24 137-160 171-194 (464)
234 2fic_A Bridging integrator 1; 42.6 1.3E+02 0.0043 23.9 10.7 56 90-148 149-211 (251)
235 1uix_A RHO-associated kinase; 42.5 83 0.0028 21.8 8.2 30 104-133 2-31 (71)
236 3lss_A Seryl-tRNA synthetase; 42.3 1.7E+02 0.0057 26.8 10.0 31 133-163 109-140 (484)
237 4b4t_K 26S protease regulatory 42.3 45 0.0015 29.8 6.1 20 103-122 46-65 (428)
238 1hlo_A Protein (transcription 42.2 24 0.00082 24.2 3.4 20 99-118 57-76 (80)
239 3fx0_A NF-kappa-B essential mo 41.9 12 0.00041 27.7 1.8 54 97-150 36-92 (96)
240 2zvf_A Alanyl-tRNA synthetase; 41.8 72 0.0025 24.0 6.5 25 127-151 32-56 (171)
241 3lay_A Zinc resistance-associa 40.6 94 0.0032 24.7 7.2 12 133-144 119-130 (175)
242 3viq_B Mating-type switching p 40.2 1E+02 0.0034 22.1 7.9 19 101-119 10-28 (85)
243 2dq0_A Seryl-tRNA synthetase; 40.2 2.1E+02 0.007 25.7 13.6 63 101-163 33-98 (455)
244 2dq3_A Seryl-tRNA synthetase; 40.0 1.6E+02 0.0055 26.1 9.3 61 103-163 34-104 (425)
245 3htk_A Structural maintenance 39.9 71 0.0024 20.3 7.3 31 118-148 24-54 (60)
246 1zxa_A CGMP-dependent protein 39.9 49 0.0017 22.7 4.6 31 128-158 26-56 (67)
247 1gk4_A Vimentin; intermediate 38.8 95 0.0033 21.5 11.7 55 96-150 23-77 (84)
248 3htk_A Structural maintenance 38.8 74 0.0025 20.2 9.1 41 100-140 13-53 (60)
249 3trt_A Vimentin; cytoskeleton, 38.7 86 0.0029 20.9 10.3 17 139-155 54-70 (77)
250 4dzo_A Mitotic spindle assembl 38.3 77 0.0026 23.8 6.0 22 99-120 4-25 (123)
251 2p22_A Suppressor protein STP2 37.7 1.2E+02 0.0042 24.2 7.4 60 92-151 27-87 (174)
252 3m0a_A TNF receptor-associated 37.6 84 0.0029 20.5 9.4 55 102-156 8-62 (66)
253 1a93_B MAX protein, coiled coi 37.4 60 0.0021 19.6 4.2 21 103-123 11-31 (34)
254 2xv5_A Lamin-A/C; structural p 37.1 1E+02 0.0034 21.3 8.8 55 104-158 3-57 (74)
255 3mud_A DNA repair protein XRCC 37.1 1.5E+02 0.0053 23.8 7.9 16 106-121 135-150 (175)
256 2l5g_B Putative uncharacterize 36.0 82 0.0028 19.9 5.7 30 126-155 8-37 (42)
257 2z5i_A TM, general control pro 35.8 76 0.0026 20.4 4.9 21 90-110 10-30 (52)
258 3oa7_A Head morphogenesis prot 35.6 1E+02 0.0035 25.5 6.7 38 111-148 35-72 (206)
259 3lss_A Seryl-tRNA synthetase; 35.6 2.6E+02 0.0087 25.6 10.1 24 140-163 109-133 (484)
260 3gpv_A Transcriptional regulat 35.3 1E+02 0.0034 23.2 6.3 32 124-155 99-130 (148)
261 3pdy_A Plectin; cytoskeleton, 35.1 1.6E+02 0.0053 22.9 8.5 23 138-160 181-203 (210)
262 3oa7_A Head morphogenesis prot 34.9 1.3E+02 0.0043 25.0 7.1 39 116-154 33-71 (206)
263 4ani_A Protein GRPE; chaperone 34.3 1.9E+02 0.0066 23.7 8.6 21 101-121 68-88 (213)
264 1uii_A Geminin; human, DNA rep 33.2 1.3E+02 0.0045 21.4 7.7 21 124-144 50-70 (83)
265 3bbp_D GRIP and coiled-coil do 32.3 50 0.0017 23.1 3.7 14 131-144 47-60 (71)
266 4b4t_M 26S protease regulatory 32.0 28 0.00096 31.3 3.1 17 135-151 54-70 (434)
267 2wvr_A Geminin; DNA replicatio 31.8 2.2E+02 0.0075 23.5 8.4 20 100-119 123-142 (209)
268 3gp4_A Transcriptional regulat 31.7 1.5E+02 0.005 22.2 6.7 20 137-156 98-117 (142)
269 3q4f_C DNA repair protein XRCC 31.7 1E+02 0.0035 25.1 6.0 18 101-118 163-180 (186)
270 3jsv_C NF-kappa-B essential mo 31.0 1.2E+02 0.0041 22.2 5.7 15 99-113 40-54 (94)
271 1j1d_C Troponin I, TNI; THIN f 30.9 1.8E+02 0.0061 22.3 7.9 48 108-155 60-107 (133)
272 3uul_A Utrophin; spectrin repe 30.8 1.3E+02 0.0043 20.5 10.8 21 138-158 82-102 (118)
273 2aze_A Transcription factor DP 30.7 1.8E+02 0.0063 22.9 7.3 43 81-127 8-50 (155)
274 2no2_A HIP-I, huntingtin-inter 30.3 1.6E+02 0.0055 21.5 11.2 32 122-153 70-101 (107)
275 3mov_A Lamin-B1; LMNB1, B-type 30.2 1.5E+02 0.0051 21.2 10.3 50 99-148 37-86 (95)
276 4e61_A Protein BIM1; EB1-like 30.0 1.7E+02 0.0058 21.7 9.3 18 142-159 40-57 (106)
277 2q6q_A Spindle POLE BODY compo 30.0 1.4E+02 0.0048 20.8 9.1 52 103-154 7-58 (74)
278 3a7o_A Autophagy protein 16; c 28.3 1.5E+02 0.0053 20.7 8.0 10 142-151 61-70 (75)
279 4gkw_A Spindle assembly abnorm 28.2 2.2E+02 0.0074 22.4 11.0 26 135-160 61-86 (167)
280 2xzr_A Immunoglobulin-binding 27.4 1.9E+02 0.0065 21.5 12.1 68 81-148 34-104 (114)
281 3mtu_A Tropomyosin alpha-1 cha 27.0 1.4E+02 0.0048 20.4 5.4 35 100-134 17-51 (75)
282 3kqg_A Langerin, C-type lectin 27.0 81 0.0028 23.4 4.5 20 139-158 21-40 (182)
283 1j1e_C Troponin I, TNI; THIN f 26.8 2.5E+02 0.0085 22.6 7.9 49 107-155 59-107 (180)
284 4b4t_J 26S protease regulatory 26.8 80 0.0028 28.2 5.1 19 100-118 26-44 (405)
285 2yko_A LINE-1 ORF1P; RNA-bindi 26.6 1.7E+02 0.0059 24.5 6.8 14 102-115 9-22 (233)
286 2gkw_A TNF receptor-associated 26.5 1.2E+02 0.0043 23.3 5.7 16 103-118 4-19 (192)
287 1lrz_A FEMA, factor essential 26.5 2.5E+02 0.0085 24.2 8.2 19 100-118 248-266 (426)
288 1x79_B RAB GTPase binding effe 26.4 2E+02 0.0069 21.4 10.2 6 145-150 49-54 (112)
289 3ljm_A Coil Ser L9C; de novo d 26.3 1E+02 0.0034 17.9 4.1 19 103-121 5-23 (31)
290 4ath_A MITF, microphthalmia-as 26.3 1.8E+02 0.006 20.7 7.6 40 97-147 37-76 (83)
291 1f5n_A Interferon-induced guan 25.9 4E+02 0.014 24.7 12.6 6 152-157 571-576 (592)
292 3thf_A Protein shroom; coiled- 25.9 2.7E+02 0.0092 22.7 11.5 29 95-123 15-43 (190)
293 3tul_A Cell invasion protein S 25.7 1.4E+02 0.0049 23.6 5.8 28 128-155 101-128 (158)
294 2aze_B Transcription factor E2 25.5 1.4E+02 0.0048 21.7 5.4 28 102-129 9-36 (106)
295 4h10_A ARYL hydrocarbon recept 25.5 1.6E+02 0.0055 20.0 5.7 36 76-111 3-38 (73)
296 3lay_A Zinc resistance-associa 25.4 2.5E+02 0.0086 22.2 10.5 12 139-150 118-129 (175)
297 4ati_A MITF, microphthalmia-as 25.3 46 0.0016 24.7 2.8 20 129-148 93-112 (118)
298 2xu6_A MDV1 coiled coil; prote 25.3 1.7E+02 0.006 20.3 6.3 36 119-154 34-69 (72)
299 3q4f_C DNA repair protein XRCC 25.3 1.3E+02 0.0046 24.4 5.7 28 100-127 155-182 (186)
300 3uun_A Dystrophin; triple heli 25.2 1.6E+02 0.0055 19.8 10.8 22 138-159 82-103 (119)
301 1deq_A Fibrinogen (alpha chain 25.0 2.1E+02 0.0072 25.8 7.4 41 99-139 113-153 (390)
302 3rrk_A V-type ATPase 116 kDa s 24.7 3E+02 0.01 22.9 8.9 31 98-128 225-255 (357)
303 2fxo_A Myosin heavy chain, car 24.3 2.2E+02 0.0074 21.0 14.5 56 103-158 45-100 (129)
304 3a2a_A Voltage-gated hydrogen 23.6 1.7E+02 0.0058 19.5 6.1 25 102-126 21-45 (58)
305 4b4t_M 26S protease regulatory 23.4 86 0.0029 28.1 4.6 21 133-153 45-65 (434)
306 3viq_A SWI5-dependent recombin 23.3 1.5E+02 0.0052 22.2 5.3 53 104-159 5-57 (122)
307 1a93_A Coiled coil, LZ, MYC pr 23.2 1.3E+02 0.0044 18.1 4.2 22 131-152 11-32 (34)
308 3mud_A DNA repair protein XRCC 23.2 1.9E+02 0.0063 23.3 6.1 34 90-123 133-166 (175)
309 1cun_A Protein (alpha spectrin 23.1 2.4E+02 0.0081 21.0 10.0 22 139-160 183-204 (213)
310 1gk6_A Vimentin; intermediate 22.9 1.6E+02 0.0055 19.1 7.2 48 110-157 4-51 (59)
311 1u5p_A Spectrin alpha chain, b 22.9 2.4E+02 0.0083 21.1 9.5 20 140-159 187-206 (216)
312 4ani_A Protein GRPE; chaperone 22.8 3.1E+02 0.01 22.4 7.5 26 100-125 60-85 (213)
313 1no4_A Late, head morphogenesi 22.6 2.2E+02 0.0074 20.4 7.6 43 109-151 29-71 (97)
314 3vmx_A Voltage-gated hydrogen 22.1 1.7E+02 0.0057 18.9 6.5 18 104-121 16-33 (48)
315 2oa5_A Hypothetical protein BQ 21.8 54 0.0018 24.7 2.5 13 128-140 16-28 (110)
316 3mtu_A Tropomyosin alpha-1 cha 21.6 2E+02 0.0068 19.6 6.1 21 104-124 7-27 (75)
317 1quu_A Human skeletal muscle a 21.4 2.9E+02 0.01 21.5 9.9 15 118-132 92-106 (250)
318 2avr_X Adhesion A; antiparalle 21.0 2.7E+02 0.0093 21.0 9.3 14 127-140 71-84 (119)
319 2dq3_A Seryl-tRNA synthetase; 20.7 67 0.0023 28.5 3.3 16 135-150 83-98 (425)
320 1tu3_F RAB GTPase binding effe 20.3 1.6E+02 0.0055 20.8 4.5 7 140-146 46-52 (79)
321 1gk4_A Vimentin; intermediate 20.3 2.2E+02 0.0074 19.6 9.6 48 108-155 28-75 (84)
322 2aze_B Transcription factor E2 20.2 2.5E+02 0.0087 20.3 6.3 24 131-154 17-40 (106)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.56 E-value=4.6e-15 Score=100.82 Aligned_cols=52 Identities=29% Similarity=0.464 Sum_probs=48.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
|+.+|+++||+||++||+||++|+++|+.+|..|+.+|..|..++..|.+.+
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4789999999999999999999999999999999999999999988877654
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.40 E-value=1.3e-12 Score=90.42 Aligned_cols=53 Identities=23% Similarity=0.343 Sum_probs=46.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
|||.+|+++||+||++||.||++++.+|+.+|..|+.+|..|..++..|..++
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999988876444433
No 3
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.31 E-value=3.5e-12 Score=88.74 Aligned_cols=51 Identities=27% Similarity=0.349 Sum_probs=42.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..++..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++.+
T Consensus 10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445699999999999999999999999999999999888887776654
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.30 E-value=1.2e-11 Score=84.81 Aligned_cols=50 Identities=22% Similarity=0.387 Sum_probs=44.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
||.+|+++||+||++||.||++++++|+.+|..|+.+|..|..++..|..
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~ 50 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999998887764444
No 5
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.24 E-value=2e-11 Score=84.11 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=43.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+.||+.+||+||++||.||+.++.+|+.+|..|+.+|..|..++..|..
T Consensus 2 ~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~ 50 (62)
T 1jnm_A 2 AERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE 50 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999999999888765444
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=99.17 E-value=1e-10 Score=83.12 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=50.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 79 KRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 79 k~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
..||+..||.|+|.+|.||++|+.+|+.+|..|+..+..|..++..|...+..|..||..|
T Consensus 9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4688899999999999999999999999999999999887766666666666665555544
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=99.06 E-value=5.7e-10 Score=77.34 Aligned_cols=57 Identities=25% Similarity=0.370 Sum_probs=43.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 78 RKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 78 Rk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
|+.+++.+||.||+|+|.||+.++.+|+.++..|+.+|..|..++.. |..|+..|+.
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~-------L~~E~~~Lk~ 58 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADS-------LAKEIQYLKD 58 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 56788899999999999999999999999999999999999888754 3445555544
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.84 E-value=2e-08 Score=72.54 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
..|+....|..+|.+||+|||.+++....+++.++..|+.+|..|..++..|..
T Consensus 11 k~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~ 64 (78)
T 1gu4_A 11 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR 64 (78)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777789999999999999999999999999999999888877764433
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.83 E-value=2.4e-08 Score=73.49 Aligned_cols=52 Identities=17% Similarity=0.202 Sum_probs=44.6
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
+..|++...|..+|.+||+|||.+++..-.+++.++..|+.+|..|+.+|..
T Consensus 10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777889999999999999999999999999999988888777653
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.50 E-value=2.6e-09 Score=81.43 Aligned_cols=69 Identities=26% Similarity=0.451 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
..+-|..||.++||.+|+.+|.||..++++||.++..|..+...| ..||..|+.|+..|+.++..|
T Consensus 33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L--------------~~En~~l~~E~~~lk~k~e~L 98 (107)
T 3a5t_A 33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKL--------------ASENASMKLELDALRSKYEAL 98 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTT--------------TSTTSHHHHTTTSSSSCC---
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344577899999999999999999999999998777765554444 446666666666666666665
Q ss_pred HHH
Q 029952 154 RQI 156 (185)
Q Consensus 154 ~~i 156 (185)
...
T Consensus 99 ~~~ 101 (107)
T 3a5t_A 99 QNF 101 (107)
T ss_dssp ---
T ss_pred HHH
Confidence 543
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.17 E-value=1.4e-05 Score=59.09 Aligned_cols=66 Identities=23% Similarity=0.390 Sum_probs=51.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
...-|..||.++||.+|+-+|.||.....+||.++..|..+-..|. .||..+..|...+++++..|
T Consensus 23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~--------------~e~~~~~~e~d~~k~k~~~L 88 (90)
T 2wt7_B 23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK--------------QEVSRLARERDAYKVKSEKL 88 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHh
Confidence 4556678999999999999999999999999988888766655554 45666667777777776654
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.30 E-value=0.00072 Score=43.43 Aligned_cols=38 Identities=32% Similarity=0.475 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE 142 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae 142 (185)
|+|+.+||.++++|+..|.+|..++. .|..||..||.-
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervs-------tLq~EN~mLRqv 39 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLS-------TLQNENQMLRHI 39 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHH
Confidence 68999999999999999999888775 566688888753
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=97.05 E-value=0.0048 Score=44.74 Aligned_cols=57 Identities=19% Similarity=0.344 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
.+.-|+.+++.|+.+|..|..+++.+......|..||.+|+.|......||..|-.-
T Consensus 21 tI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 21 TITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344566677778888888888888888888889999999999999999998877543
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=96.32 E-value=0.0019 Score=47.77 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 029952 73 SVIDERKRRRMISNRESARRSRMRKQKHLENLR 105 (185)
Q Consensus 73 ~~~deRk~RR~lsNRESARRSR~RKk~~l~eLe 105 (185)
.....|..||..+||.+|+++|.||....+.|+
T Consensus 57 Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~ 89 (92)
T 1skn_P 57 QRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMS 89 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhh
Confidence 345677889999999999999999999888765
No 15
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=96.02 E-value=0.029 Score=37.48 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
.+.|-.||+.|+.||..|+.++..=..++..|+.|-.-+++-+..|.
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHc
Confidence 47889999999999999999999999999888888877766555444
No 16
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=95.98 E-value=0.095 Score=40.88 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+.+...+.|+.++..+..+...|+.++..+..++..+..++..|+.++..|..++..|..-+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~ 133 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETEL 133 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456778888888888888888888888888888888888888888888888887776544
No 17
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=95.74 E-value=0.064 Score=40.29 Aligned_cols=50 Identities=30% Similarity=0.387 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSN-------RLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~-------~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+..-+|+.++..|+.+|..|+. ++..|..++..|..||..|+.|....++
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~~ 93 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3445688888888888888777 6666777777777777777777665443
No 18
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=95.71 E-value=0.17 Score=36.60 Aligned_cols=57 Identities=9% Similarity=0.112 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.-++.|+.+|..+-....-|+.++..|+++...|..+|..++.....|.+....|.+
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~ 62 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKE 62 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 357889999999999888888899999998888888888866655555555444443
No 19
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=95.15 E-value=0.11 Score=35.79 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
+..-|.+|.+|.+-|..|..++..+...++.|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 34557889999999999999999999999999999998873
No 20
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=94.56 E-value=0.12 Score=37.67 Aligned_cols=39 Identities=23% Similarity=0.311 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
...+......|+.||..|+.++..|...+..|..+|...
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 344566778888899999999999999999888887753
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=94.35 E-value=0.14 Score=34.35 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+..|...+..|..+|..|+.++..|+..+..|.++|.
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 346667777888889999999999999999999888774
No 22
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=94.23 E-value=0.18 Score=34.21 Aligned_cols=40 Identities=10% Similarity=0.299 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+...|..++..|..+|..|+.++..|+..+..|.++|.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777888889999999999999999999999998875
No 23
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=94.06 E-value=0.86 Score=30.67 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+..|..++..|..+|..|+.++..|+..+..|.++|.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677778889999999999999999999999988875
No 24
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=93.77 E-value=0.22 Score=37.24 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.+..|..+++.|+.||..|+.++..|.-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~ 40 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEA 40 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777666553
No 25
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=93.65 E-value=0.26 Score=32.42 Aligned_cols=37 Identities=22% Similarity=0.404 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
+.++..|+.-|..|..++..|...|..++.|+.+|+.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 6788999999999999999999999999999988874
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.46 E-value=1.1 Score=34.88 Aligned_cols=58 Identities=7% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.+..++..|+.+...+..++..|++++..+..++..+..++.+|+.++..|..-+.-.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~l 129 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKL 129 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666666666666666666666666666666555443
No 27
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=93.31 E-value=0.14 Score=36.52 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
...+...+..|+.||..|+.++..|+..+..|.++|.
T Consensus 38 ~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~ 74 (78)
T 1gu4_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777788888888888888888888877664
No 28
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=93.02 E-value=0.12 Score=31.50 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 567888888888888777777765554
No 29
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=92.87 E-value=1.1 Score=32.05 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
=++.+..-..++..|+.-..+|..--..|..-+..|..|-..|...+..|+.+...|..++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~~~l 76 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELSSAL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888888888888888888899999999999999999999999887654
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=92.57 E-value=0.16 Score=34.13 Aligned_cols=39 Identities=18% Similarity=0.405 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+..|...+..|..+|..|+.++..|+..+..|.++|.
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999999999988888877764
No 31
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=92.37 E-value=0.91 Score=30.77 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENREL 118 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L 118 (185)
..-+||.++|++|.|=++.++....-.+.-..||..|
T Consensus 5 kryknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 5 KRYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 3468999999999998887776654444444444444
No 32
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=92.29 E-value=1.1 Score=31.67 Aligned_cols=48 Identities=19% Similarity=0.316 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.++..++..++.+|+.|..++..+...+..-..+-..++.++..+-..
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998888877777777776655443
No 33
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=92.29 E-value=0.2 Score=30.63 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
++..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4667888888877777777766655543
No 34
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=92.13 E-value=0.3 Score=30.23 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
+|..|+.+|+.|-.+|..|..++..|+.-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 46788888888888888888777666553
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.08 E-value=1.5 Score=39.38 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+.+..++.+.+.++.+++.+.++++...+.+..++.|...|+.+..+-++++..+.+
T Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~ 565 (597)
T 3oja_B 509 KVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQ 565 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHH
Confidence 344455555555666666666666666666665556666555555544444444443
No 36
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.08 E-value=0.5 Score=33.91 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.+++..++..++.+|+.|..++..+...+..-..+-..++.|+..+-..|
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677899999999999999999999988887777777777776654433
No 37
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=91.60 E-value=0.58 Score=31.64 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
+.++..|+..|-.|..+++.|..+|...+.|+.+|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888999998888888888888888764
No 38
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.60 E-value=2.5 Score=33.71 Aligned_cols=46 Identities=7% Similarity=0.023 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
..+.+-..-+..|..|...|..++..+..+...|..||..|-...+
T Consensus 89 eel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM 134 (152)
T 3a7p_A 89 EVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWL 134 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555566666666666666666666666666655544433
No 39
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=90.76 E-value=0.37 Score=29.45 Aligned_cols=28 Identities=7% Similarity=0.099 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4667788888877777777776665543
No 40
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.63 E-value=2.7 Score=31.75 Aligned_cols=53 Identities=13% Similarity=0.146 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+..|+.++..|+..+..|...+..|......|+...+.--+-+..+..++...
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~a 89 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQA 89 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666655543
No 41
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=90.55 E-value=2.9 Score=30.25 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~ 126 (185)
.+|..|+.+|..|..++..+.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666655554444
No 42
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=90.42 E-value=0.33 Score=30.02 Aligned_cols=29 Identities=14% Similarity=0.213 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
+|..|+.+|+.|-.+|..|..++..|+.-
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46778888888888888888777666553
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.35 E-value=2.5 Score=31.39 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
..|+.++.....+...|..++..-......++.++..+..|+.+|..
T Consensus 15 ~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 15 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444433
No 44
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=90.08 E-value=0.46 Score=28.86 Aligned_cols=27 Identities=11% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 567777888777777777766665543
No 45
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.05 E-value=5.2 Score=40.09 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
..+..|+.+++.|+.+.+++..+...+
T Consensus 984 ~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 984 NRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333333
No 46
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=89.73 E-value=1.7 Score=27.86 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.+..|+.+|..|+.+|..|+.+.---+.-+. -|..|++.||.++
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdlia-------ylekeianlrkki 47 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIA-------YLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHH-------HHHHHHHHHHHHh
Confidence 4678899999999999988876533222222 3455556666554
No 47
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.72 E-value=0.69 Score=32.27 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
+..|......+..||..|+.++..|...+..
T Consensus 38 v~~le~~~~~l~~en~~Lr~~i~~L~~El~~ 68 (70)
T 1gd2_E 38 VVTLKELHSSTTLENDQLRQKVRQLEEELRI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445566676777666666666543
No 48
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=89.53 E-value=0.46 Score=27.42 Aligned_cols=25 Identities=16% Similarity=0.465 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..|+-||..|...++.|++++.+|.
T Consensus 3 dalefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHhc
Confidence 3566788888888888888877764
No 49
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=89.52 E-value=0.49 Score=28.94 Aligned_cols=28 Identities=11% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4567888888887777777777665544
No 50
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=89.42 E-value=2.4 Score=32.60 Aligned_cols=51 Identities=22% Similarity=0.331 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
+.|+.+..+-....++|..+|..|.+++....+|-.+||.+...|..|+.+
T Consensus 60 ~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~ 110 (121)
T 3mq7_A 60 ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIAD 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhh
Confidence 344444444445566777777777777777777777777777777776644
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=89.39 E-value=7 Score=31.10 Aligned_cols=60 Identities=15% Similarity=0.173 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
-+......+.+|+..+..-...++.|..++..|.-++..++.....|..|...|-+||-.
T Consensus 76 El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 76 ELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666677777777777777888888888888888888888888888888777643
No 52
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=89.20 E-value=0.54 Score=28.77 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888888888877777777765554
No 53
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=89.17 E-value=3.2 Score=29.42 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFA------LHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L------~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
++.++.|+.++..|+.+...|..++..- -..+..+..+-..+..++..+-.|+..|..+
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe~~ 85 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLEAL 85 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999988631 2456777888888888999999998887654
No 54
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=89.15 E-value=0.54 Score=28.72 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
++..|+.+|+.|-.+|..|..++..|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4677888888888888887777766554
No 55
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=89.11 E-value=1.3 Score=31.26 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
++.+||.+++.++.-...|. ..+..-..+-..|+.++..|..|+..+.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn-------~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELS-------EALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555444444 4444444455566666666666666654
No 56
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.87 E-value=5.7 Score=32.52 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 134 TDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 134 ~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.|...|+.....|+.+|..|+
T Consensus 95 ~el~~l~~~~~~l~~~ireLE 115 (189)
T 2v71_A 95 DDLSQTRAIKEQLHKYVRELE 115 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444433
No 57
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=88.32 E-value=0.033 Score=41.06 Aligned_cols=24 Identities=33% Similarity=0.238 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH
Q 029952 75 IDERKRRRMISNRESARRSRMRKQ 98 (185)
Q Consensus 75 ~deRk~RR~lsNRESARRSR~RKk 98 (185)
..-|..||.-+||.+|+++|.||.
T Consensus 63 ~lIrdiRRRgKNKvAAqnCRKRKl 86 (91)
T 2kz5_A 63 ALVRDIRRRGKNKVAAQNYRKRKL 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCCCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 345678999999999999999985
No 58
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=88.23 E-value=0.76 Score=27.91 Aligned_cols=27 Identities=7% Similarity=0.126 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
|..||.+|+.|-.+|..|..++..|+.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888888888888888777765544
No 59
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=87.98 E-value=1.3 Score=31.68 Aligned_cols=35 Identities=20% Similarity=0.265 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
.||.+|+.++..+.+.+..|..||..|+.-....+
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~ 68 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQ 68 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988864444333
No 60
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=87.78 E-value=0.8 Score=31.09 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
..+..|..++..|..+|..|+.++..|+..|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777788888888888888877653
No 61
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=87.46 E-value=1.3 Score=27.50 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 112 RMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 112 ~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
-.||.+|+..+..-.+++..|..||..|.
T Consensus 6 L~ENekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 6 LKENEKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 36899999999999999999999997775
No 62
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=87.36 E-value=0.73 Score=27.12 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
-+..|++||.+|++...+|-.++
T Consensus 7 llasleaenkqlkakveellakv 29 (31)
T 1p9i_A 7 LLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 34667888888888888776665
No 63
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=87.00 E-value=5.8 Score=28.33 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDND 137 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~ 137 (185)
+-+|..++..|+.|...|+..++.+..++..+.....
T Consensus 22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666655555544443
No 64
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=86.86 E-value=1 Score=38.58 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDR 138 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~ 138 (185)
..+.+|+.++..|...|..|...+..++.++..|..|+.+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655555444444444433
No 65
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.56 E-value=5.4 Score=35.78 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
+.++..+..++...+.+..++..+++.......+-+.|+.+..+|+.+++...+.+.
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 445555556666666666666666666666666666666666667776666666665
No 66
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=86.00 E-value=8.5 Score=28.34 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=55.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 84 ISNRESARRSRMRKQKHLENLRNQLNRLR---MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 84 lsNRESARRSR~RKk~~l~eLe~qV~~L~---~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
..|-.+|-..=..|+..+++|...+..++ ..+..|+.++......+..-.+.=.++..+...|...|..+..
T Consensus 8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq~ 82 (94)
T 3jsv_C 8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQR 82 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34556666777779999999999888888 6677788888888888887777777777777777777666544
No 67
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=85.97 E-value=1.7 Score=25.83 Aligned_cols=29 Identities=21% Similarity=0.415 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
+..|+.+|.+.+.+|-.|..++..|...|
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 44566667666666666666655554443
No 68
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.86 E-value=5.8 Score=29.63 Aligned_cols=28 Identities=29% Similarity=0.412 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
-..+.+|+.+|..|+.||+.|..+...-
T Consensus 64 ~~~v~eLe~everL~~ENq~L~~e~~~~ 91 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQLLTENELH 91 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4678889999999999998887765443
No 69
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.77 E-value=9.7 Score=28.78 Aligned_cols=71 Identities=14% Similarity=0.244 Sum_probs=52.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 84 ISNRESARRSRMRKQKHLENLRNQLNRLRM---ENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 84 lsNRESARRSR~RKk~~l~eLe~qV~~L~~---eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..|=.+|-..=..|+..+++|..++..++. ....|+.++......+..-.+.=..+-.+...|...|..|.
T Consensus 30 ~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq 103 (110)
T 2v4h_A 30 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ 103 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHH
Confidence 445566777777799999999999888888 66778888888877777666666666666666666666554
No 70
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=85.46 E-value=3.5 Score=29.18 Aligned_cols=49 Identities=18% Similarity=0.271 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++||.+|+.|+.--..|+.++..|..++.. -...|++||..|+..+.-.
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~s----------sQ~KLKqRit~LE~~~~~~ 51 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEYES----------MQQKLKQRLTKVEKFLKPL 51 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhccc
Confidence 457777777766666666665554443322 2256777777777766653
No 71
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=85.43 E-value=4.5 Score=26.58 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
+.+|..++..|...|.+|...+...+.++
T Consensus 11 ~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 11 IHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666665554443333
No 72
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=85.32 E-value=8.1 Score=27.50 Aligned_cols=57 Identities=21% Similarity=0.245 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.++..+|..|-.||.+|...-..|.-.-..|-+.-..|-.|...|+..|.++.+...
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 466778888888898887765555444444444444444444444444444444443
No 73
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=85.30 E-value=8.9 Score=38.37 Aligned_cols=14 Identities=14% Similarity=0.154 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 029952 136 NDRLRSEHTILRRR 149 (185)
Q Consensus 136 N~~Lrae~~~Lr~r 149 (185)
...|..++.+|..+
T Consensus 922 ~~~Le~~l~ele~e 935 (1184)
T 1i84_S 922 KQELEEILHEMEAR 935 (1184)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 74
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=85.19 E-value=5.7 Score=25.61 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
++|.+|+.|+.--..|..++..|..++. +-...|++||..|+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~----------ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYN----------ATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHh
Confidence 5677777776666666655554444332 222567777777764
No 75
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.13 E-value=7.6 Score=27.00 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
..++.++.++...+.....+..++..|..++..++.+=......+.....+|.
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLe 72 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555444444444444444443
No 76
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=84.96 E-value=9.2 Score=27.80 Aligned_cols=60 Identities=8% Similarity=0.041 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.-....+.++.++..++..+..+..++..|..++..++.+=..+...+.....+|..-..
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666667777777777777777777777766666666666666555555554443
No 77
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=84.86 E-value=2.1 Score=31.90 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 120 NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 120 ~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.++..++.++..|+.||..|+.++..|..+|+.
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888888998888888888887754
No 78
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=84.69 E-value=2 Score=28.25 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRL 122 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l 122 (185)
..|+.|+.||..|+.++
T Consensus 19 ~d~eaLk~E~~eLk~k~ 35 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKY 35 (53)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 34455555555544443
No 79
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=84.14 E-value=6 Score=25.95 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRL 122 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l 122 (185)
.++..|+.++..|..++
T Consensus 9 ~r~~~l~~~l~~L~~rN 25 (51)
T 3m91_A 9 RDIHQLEARIDSLAARN 25 (51)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 80
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=84.09 E-value=11 Score=31.49 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.||..|+.+|..+.+.+..|..||..|+.=.. .+..|..+|..
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae----~~q~la~vi~~ 157 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAE----HVQYMAELIER 157 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 58899999999988888888889977765444 44444444443
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=83.87 E-value=16 Score=32.13 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
......++...+..||++|+.++.++...+....+.|.-.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 3334444555555666666666666666666666555543
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=83.83 E-value=4.6 Score=35.99 Aligned_cols=50 Identities=14% Similarity=0.177 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
+.+++.|+.++..|+.+...+..++..+.+++...+.+-..|-.++.+|+
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555555444444444444444433333
No 83
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=83.78 E-value=10 Score=27.35 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 112 RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 112 ~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
-.||..|...+..+...+..+..||..|+ +|......|..+|.
T Consensus 37 L~EN~~Lh~~ie~~~eEi~~Lk~en~~L~----elA~~~q~la~~i~ 79 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDSEIARLRKENKDLA----EVAEHVQYMAEVIE 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 35788888888888888888888887775 34444555555443
No 84
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=83.57 E-value=6.1 Score=25.30 Aligned_cols=18 Identities=11% Similarity=0.386 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~ 144 (185)
.....|+.||.-|+....
T Consensus 10 nevaslenenetlkkknl 27 (49)
T 3he5_A 10 NEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcc
Confidence 334445555555554443
No 85
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=83.53 E-value=7.7 Score=29.76 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+..|..|...|..++......++.|+.
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~ 99 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRR 99 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444444444443333
No 86
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=83.36 E-value=20 Score=35.93 Aligned_cols=26 Identities=19% Similarity=0.417 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~ 121 (185)
..++.+++|+.++..+..|...|..+
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~ 1013 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEW 1013 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444333
No 87
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=83.23 E-value=12 Score=27.90 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHh
Q 029952 74 VIDERKRRRMISN 86 (185)
Q Consensus 74 ~~deRk~RR~lsN 86 (185)
..+||-++-|++|
T Consensus 6 EvEEKyrKAMVsn 18 (103)
T 4h22_A 6 EVEEKYKKAMVSN 18 (103)
T ss_dssp --CCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3456667778887
No 88
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=83.08 E-value=2.8 Score=27.55 Aligned_cols=25 Identities=4% Similarity=0.159 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.|..||..|+.++..|..++..+..
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444433
No 89
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=83.01 E-value=11 Score=27.34 Aligned_cols=31 Identities=10% Similarity=0.129 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.+.|+.||..|..++..|+..+..+..-+..
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~ 80 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDA 80 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666655555544433
No 90
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=82.80 E-value=11 Score=37.68 Aligned_cols=32 Identities=16% Similarity=0.121 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+..++.+-..|..+...|..++..+..-+.
T Consensus 906 ~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444555555555555555555443
No 91
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=82.48 E-value=2.1 Score=26.14 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
++..|+.+|+.|-.++..|..++..|++
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3567778888877777777776665543
No 92
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.38 E-value=1.9 Score=30.06 Aligned_cols=18 Identities=22% Similarity=0.553 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL 150 (185)
..|...|+.++..|+.+|
T Consensus 60 ~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 60 QQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444
No 93
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=82.33 E-value=4.5 Score=36.32 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
.+.+|+.++.+|+.++..+..++..+.+++...+.+...|-.++.+|+
T Consensus 11 el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 11 EVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 444555555555555555555555555555444444444444444444
No 94
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=81.86 E-value=12 Score=26.69 Aligned_cols=36 Identities=14% Similarity=0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
|..++..+...+..|...+..+.-++..|..+-.++
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 95
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=81.84 E-value=1.6 Score=28.79 Aligned_cols=29 Identities=14% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 121 RLRFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 121 ~l~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
.+..|..++..|..||..|+.++..|+..
T Consensus 23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 23 YVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777788888888888777654
No 96
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=81.64 E-value=1.5 Score=25.26 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l 153 (185)
...|.+|+.|++.|.-.+..|
T Consensus 6 kqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 6 KQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 334555555555555544444
No 97
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=81.60 E-value=0.93 Score=32.34 Aligned_cols=25 Identities=16% Similarity=0.313 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
.|+.+|..|.++...|+.||..||.
T Consensus 19 vLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 19 ILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555566666666654
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=81.39 E-value=13 Score=26.83 Aligned_cols=59 Identities=5% Similarity=0.058 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.-....+.++.++..++..+..+..++..|..++..++.+=..+...+.....+|..-.
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777777777777777777666666555555555555554443
No 99
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=81.16 E-value=2.9 Score=25.47 Aligned_cols=28 Identities=14% Similarity=0.018 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..|..++..|..+|..|..|...|+.-|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455666677777777777777666543
No 100
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.75 E-value=5.4 Score=28.06 Aligned_cols=31 Identities=6% Similarity=-0.129 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..|-..=.....++..|+.+|..|.+-+.-+
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333334455555666665555555443
No 101
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.66 E-value=9.2 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.-|+.++..|+....+|+.+-+.|..-++.|+..+..|+
T Consensus 6 aylrkkiarlkkdnlqlerdeqnlekiianlrdeiarle 44 (52)
T 3he5_B 6 AYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLE 44 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444455554444443
No 102
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=80.10 E-value=17 Score=27.49 Aligned_cols=48 Identities=25% Similarity=0.329 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
...-+.++.+|+.+|+.|+.+...-+.. ......||..|+.++..|+.
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~-------~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL-------RQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777777666555433 44556677788877777643
No 103
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=79.87 E-value=9.9 Score=25.14 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.++...+..|+.+.+.++..+......++.|..=.-.|-.|++..|.-|
T Consensus 3 ~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 3 KQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566677777777777777777666777777666667777777766544
No 104
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=79.53 E-value=1.7 Score=28.73 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 126 LHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 126 ~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
...+..+..||..|+.++..|..+
T Consensus 33 ~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 33 RKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444555555555555555443
No 105
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=79.41 E-value=4.3 Score=28.51 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.+..|+..|+.+...|+.+|.
T Consensus 58 ~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 58 KAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444455554443
No 106
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=79.25 E-value=2.4 Score=25.74 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.|..++..|..+|..|..|+..|+.-|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455666777778888888888776543
No 107
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=79.19 E-value=2.5 Score=36.10 Aligned_cols=32 Identities=16% Similarity=0.155 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
+..|...|..|..++..++++|..|..-|...
T Consensus 63 l~~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 63 IDSLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444443
No 108
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=79.16 E-value=3.1 Score=25.81 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
.|-.++.....++..|+.+|..|..++.
T Consensus 10 ~LNdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 10 ELNDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677778888877776654
No 109
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=78.98 E-value=20 Score=29.51 Aligned_cols=35 Identities=6% Similarity=0.061 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 94 RMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 94 R~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
-...+..+++++.++..++.+...+..++...+.+
T Consensus 48 ~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~ 82 (256)
T 3na7_A 48 ILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKK 82 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555444444444444444443
No 110
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=77.87 E-value=16 Score=25.88 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
....+|+.+...|..+...|..++..+.+.+..|......|...+.+|..||.
T Consensus 35 ~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 35 RIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44456666666666666666666666777777777777777777777766664
No 111
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=77.85 E-value=27 Score=28.47 Aligned_cols=54 Identities=13% Similarity=0.126 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+..|+.++..|+..+..|..++..|......++...+.+.+-+..+..++...-
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~ai 143 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAI 143 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444433
No 112
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=77.82 E-value=16 Score=25.87 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.+...+.....|+..+..|..+...|..++..++.-...|.+...+|-..|..+..-|
T Consensus 29 ~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 29 DLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455667777888888888888888888888888888888888888888888876654
No 113
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=77.21 E-value=6.8 Score=27.14 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
-+..|..++..|..++..|+.+...|.+-|
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 114
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=76.65 E-value=12 Score=26.52 Aligned_cols=18 Identities=28% Similarity=0.553 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~ 152 (185)
+...|+.+...|+.+|..
T Consensus 67 ~~~~L~~~n~~L~~rl~~ 84 (88)
T 1nkp_A 67 EEDLLRKRREQLKHKLEQ 84 (88)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444443
No 115
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=75.75 E-value=6.7 Score=28.32 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELS------------NRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~------------~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
-.||++-..|+.+...+. ..+..|+.++..+..||.+|..++..|..-+..+.
T Consensus 26 R~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 26 RFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555554443 33555566666666666666666666666555543
No 116
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.56 E-value=41 Score=29.44 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
+++.+.+.++.+....+.+++.++++.+.++.+...+..++.+-++++.++.+.
T Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 425 EQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
Confidence 344444445555556666666666666666666666666666666666665544
No 117
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.52 E-value=16 Score=29.96 Aligned_cols=23 Identities=26% Similarity=0.186 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
+.-..-|..|..||..|..++..
T Consensus 16 ~~ad~LV~~L~~En~~L~~ql~~ 38 (190)
T 4emc_A 16 DSADLLVANLVNENFVLSEKLDT 38 (190)
T ss_dssp ----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 118
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=75.51 E-value=30 Score=27.80 Aligned_cols=61 Identities=15% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 87 RESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 87 RESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
=+.=|+.|.+..+.+.+|+.++..|..+ +..++.....+..||..|-..+..|...-.++.
T Consensus 78 L~qEr~~r~q~se~~~elq~ri~~L~~E-------l~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 78 LEAERRDRGHDSEMIGDLQARITSLQEE-------VKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3344555555555555555555554444 444444555666666666666666555444444
No 119
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=75.37 E-value=1.4 Score=36.91 Aligned_cols=15 Identities=33% Similarity=0.326 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 111 LRMENRELSNRLRFA 125 (185)
Q Consensus 111 L~~eN~~L~~~l~~L 125 (185)
|..||++|+.++..|
T Consensus 24 l~~eN~~Lk~e~~~l 38 (255)
T 2j5u_A 24 TYTENQHLKERLEEL 38 (255)
T ss_dssp --CTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 120
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=74.88 E-value=4.8 Score=23.60 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
+.|..-+..|+.||..|+.+++.|..+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888888888887766543
No 121
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=74.66 E-value=2.7 Score=24.12 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
..|...|..|+.++..|..++..|
T Consensus 3 rrlkqknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHh
Confidence 345556666666665555554443
No 122
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=74.62 E-value=5.9 Score=24.08 Aligned_cols=28 Identities=7% Similarity=0.000 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..|..++..|..+|..|..|.+.|+.-|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4455666677777877877777776544
No 123
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=74.58 E-value=17 Score=24.43 Aligned_cols=60 Identities=18% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
|..-+.+|+.++..++.--..+..++..+.-....+..++..=+..+..|..|+..+.+.
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 344566677777776665555555555444444444344433344555566666666554
No 124
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=74.58 E-value=19 Score=25.06 Aligned_cols=51 Identities=22% Similarity=0.180 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.+++...+..|+.+.+.++..+......++.|..=.-.|-.|++..+.-|.
T Consensus 7 ~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 7 RDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555555556666555555566666555666677776665444
No 125
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=74.55 E-value=7.6 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.235 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr 147 (185)
...|..+|..|+.++..|+
T Consensus 68 ~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3345556666666665553
No 126
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=74.25 E-value=22 Score=25.71 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.++-..+..|..++..|+.+-..+...+......+......-..-.+++..|.+|+.-|.
T Consensus 40 ~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 40 KQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344444444444444444444433333333333222222233346777777776553
No 127
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=74.23 E-value=34 Score=38.49 Aligned_cols=72 Identities=7% Similarity=0.126 Sum_probs=34.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHH--------------CQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~--------------~~~L~~EN~~Lrae~~~Lr 147 (185)
...++-+.|+..=..+++.+.+|+.+++.|+.+-+++..+.+.|+.+ +..|..|+.+....+..|.
T Consensus 2018 ~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~ 2097 (3245)
T 3vkg_A 2018 QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFN 2097 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHH
Confidence 33444444444444555555555555555555444333332222222 2234555555555555555
Q ss_pred HHHHHH
Q 029952 148 RRLSEI 153 (185)
Q Consensus 148 ~rL~~l 153 (185)
.++..|
T Consensus 2098 ~~~~~L 2103 (3245)
T 3vkg_A 2098 TQMSTV 2103 (3245)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555444
No 128
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=74.19 E-value=24 Score=26.18 Aligned_cols=40 Identities=10% Similarity=0.115 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+...+..++..+.....-...|..++..|+..|..+..+.
T Consensus 67 ~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~h 106 (119)
T 3ol1_A 67 AENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLH 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444445555555555555555443
No 129
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=74.13 E-value=4.7 Score=28.31 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~ 121 (185)
.|+..|+.+...|..+...|..+
T Consensus 47 ~yI~~L~~~~~~l~~e~~~L~~e 69 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQIDQLQRE 69 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444333
No 130
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=73.94 E-value=7.3 Score=23.97 Aligned_cols=29 Identities=10% Similarity=0.160 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.|..+...|..+|..|..|...|+..|..
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 34444455555666666666666665543
No 131
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=73.87 E-value=6.4 Score=23.80 Aligned_cols=28 Identities=4% Similarity=0.063 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..|..++..|..+|..|..|++.|+.-|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455666777778888888877776644
No 132
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.80 E-value=19 Score=24.85 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.+..+..++..|..|+..+.
T Consensus 35 ~~~~~E~ev~~L~kKiq~lE 54 (81)
T 1ic2_A 35 RSKQLEDELVALQKKLKGTE 54 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 133
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=73.80 E-value=13 Score=32.97 Aligned_cols=34 Identities=9% Similarity=0.226 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
.++.|+.++..|+.+..+|..++..++.++..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766666554443
No 134
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.75 E-value=5.9 Score=27.68 Aligned_cols=68 Identities=16% Similarity=0.232 Sum_probs=35.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQKHLENLRNQLNRL---RMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L---~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.|+...-.+-|+-|.+=...+.+|..-|-.. ...-.-| ....+-+..|..++..|..+...|+.++..
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL----~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~ 75 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVL----RKAIDYIRFLQHSNQKLKQENLSLRTAVHK 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666666667777777655432 0011112 222334445555556666666666655544
No 135
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=73.63 E-value=26 Score=26.19 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
..-..+.+++.|+.++.+|+..+.........+..+|..|.
T Consensus 12 ~~~~~e~e~~~l~~~~~el~~~l~~~~~~~~e~g~~~~~lq 52 (125)
T 1joc_A 12 RCLKGEGEIEKLQTKVLELQRKLDNTTAAVQELGRENQSLQ 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 33445556777777777777777766655555555555443
No 136
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=73.35 E-value=9.3 Score=26.65 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
.|+..|+.++..|+.++..|+..++
T Consensus 50 ~YI~~Lq~~~~~L~~e~~~L~~~~~ 74 (82)
T 1am9_A 50 DYIRFLQHSNQKLKQENLSLRTAVH 74 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777777766666554
No 137
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=73.26 E-value=34 Score=27.45 Aligned_cols=48 Identities=25% Similarity=0.357 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 93 SRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSE 142 (185)
Q Consensus 93 SR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae 142 (185)
-|.||.. .++...+..++..+.+|...+..|..+...|+.|...|.++
T Consensus 30 ~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~ 77 (168)
T 3o0z_A 30 VRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAI 77 (168)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 55555556666666666666655555555555555544443
No 138
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=72.90 E-value=24 Score=25.41 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 113 MENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 113 ~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
.||..|..++..+.+.+..+..+|..|+.
T Consensus 46 ~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 46 KENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888887777766666666655553
No 139
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.84 E-value=15 Score=23.26 Aligned_cols=20 Identities=30% Similarity=0.415 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSN 120 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~ 120 (185)
..+|+.+|..|+.||+.|++
T Consensus 19 naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 19 NSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555555544
No 140
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=72.45 E-value=2.6 Score=24.19 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
..|+.||..|..++..|++++..|
T Consensus 3 dalefendaleqkiaalkqkiasl 26 (28)
T 3ra3_A 3 DALEFENDALEQKIAALKQKIASL 26 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhccHHHHHHHHHHHHHHHHh
Confidence 457788888888887777766554
No 141
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=72.26 E-value=4.3 Score=26.79 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
..++.+...+..|..+|..|+.++..+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56777888888888888888887776654
No 142
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=71.73 E-value=18 Score=23.69 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.+++|..+|..|..+...|...+..++.
T Consensus 5 ki~~Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555554444443
No 143
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=71.65 E-value=4.7 Score=28.70 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+.|..++..|...|..|..++..|+.
T Consensus 18 evLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 18 EILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 144
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=71.46 E-value=22 Score=25.08 Aligned_cols=49 Identities=12% Similarity=0.105 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
++.+=+.++..|+..-.--..-.+.|...+-.+--||..|...+..|++
T Consensus 26 eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 26 ELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 3333344444444443333334455666667777888777766665543
No 145
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=71.40 E-value=19 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
|...+.+|+.++.....+.+.|+.++.
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555555544
No 146
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=70.49 E-value=7.6 Score=23.64 Aligned_cols=12 Identities=17% Similarity=0.349 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSE 142 (185)
Q Consensus 131 ~L~~EN~~Lrae 142 (185)
.+..+|..|..+
T Consensus 18 dlkrQN~~Le~Q 29 (34)
T 1a93_B 18 DLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444443
No 147
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=69.98 E-value=2.6 Score=31.93 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
..-+++|..++..|+.||..|+.++..
T Consensus 7 ~~t~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 7 DKTYEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345899999999999999999999863
No 148
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.88 E-value=30 Score=38.84 Aligned_cols=55 Identities=5% Similarity=0.143 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+.+++..+.+-++|..++..|+.++..+..|-+.|+.++.....||.....++..
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~g 2081 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDN 2081 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555556666667777777777778888888888888888888877777654
No 149
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.56 E-value=13 Score=27.79 Aligned_cols=27 Identities=19% Similarity=0.364 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+..|+.++..|+..+..|...+..+..
T Consensus 45 iq~L~~el~~l~~~~~~LE~~l~e~e~ 71 (129)
T 3tnu_B 45 IQRLRAEIDNVKKQCANLQNAIADAEQ 71 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555555555544443
No 150
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.55 E-value=45 Score=27.32 Aligned_cols=24 Identities=4% Similarity=0.052 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
..|..++..++.+...|..++..+
T Consensus 93 ~aL~kEie~~~~~i~~lE~eile~ 116 (256)
T 3na7_A 93 RSLNIEEDIAKERSNQANREIENL 116 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333
No 151
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.46 E-value=23 Score=28.01 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+.++..|..|+.++.+-..+|..+...|.
T Consensus 109 ~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~ 139 (154)
T 2ocy_A 109 EKYAIEILNKRLTEQLREKDTLLDTLTLQLK 139 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555544443
No 152
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=69.03 E-value=13 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.|.++...|..||.-||.|+..-...|..|+
T Consensus 6 dQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE 37 (54)
T 1deb_A 6 DQLLKQVEALKMENSNLRQELEDNSNHLTKLE 37 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence 34555666777788888777766555554443
No 153
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=68.26 E-value=2.3 Score=35.62 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
..|..+.+.|+.||..|+.++. ++..++.||.+|+.
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~----~~~~l~~En~rLr~ 57 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLES----EVADLKKENKDLKE 57 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3445555566666666655543 23344555555543
No 154
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=68.16 E-value=3.7 Score=34.53 Aligned_cols=40 Identities=10% Similarity=-0.015 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 74 VIDERKRRRMISNRESARRSRMRKQKHLENLRNQLNRLRM 113 (185)
Q Consensus 74 ~~deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~ 113 (185)
..+.+|-+|.++-=.==-+.|+-|...++++-.+.+.+..
T Consensus 116 kP~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~ 155 (250)
T 2ve7_C 116 CPKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSAD 155 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888765444444555555444444443333333
No 155
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.07 E-value=44 Score=30.67 Aligned_cols=30 Identities=17% Similarity=0.373 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.|..+-..|+.++.+|..++..+..-|...
T Consensus 120 ~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 156
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=67.95 E-value=6.3 Score=23.99 Aligned_cols=28 Identities=7% Similarity=0.166 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
..|..++..|..+|..|..|++.|+.-|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3455566667777877877777776543
No 157
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=67.71 E-value=56 Score=29.04 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHC--------QRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~--------~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..+.+|..+...+..+-..|+.+.+.+..++ ..|..+-..|+.++.+|..++..+..-|...
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555444444333 3344444555555555555555555555443
No 158
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=67.48 E-value=21 Score=29.08 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 132 VRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 132 L~~EN~~Lrae~~~Lr~rL 150 (185)
|..||++|+.|......|+
T Consensus 164 LqkeNeRL~~E~n~~l~ql 182 (184)
T 3w03_C 164 LQKENERLLRDWNDVQGRF 182 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344445554444444443
No 159
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=67.06 E-value=17 Score=25.53 Aligned_cols=23 Identities=9% Similarity=-0.107 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~ 144 (185)
+..+..++.....+...|+.++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLD 64 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELD 64 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444433
No 160
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.91 E-value=17 Score=30.32 Aligned_cols=56 Identities=25% Similarity=0.303 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS---EIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~---~l~~il~~~ 160 (185)
+.=.|.+++.|+.+|..|..++..|.. ...+|..+-.....|..+|- ++.+++..+
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L 125 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLLDATSLEDVVSTV 125 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 445567788888888888888776554 45789999888888888876 344444433
No 161
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=66.38 E-value=19 Score=26.98 Aligned_cols=26 Identities=19% Similarity=0.455 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
+.+...+.|...|+.++.+|+.+|..
T Consensus 11 ~~~~~~e~e~~~l~~~~~el~~~l~~ 36 (125)
T 1joc_A 11 ERCLKGEGEIEKLQTKVLELQRKLDN 36 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555554444
No 162
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=66.11 E-value=16 Score=23.22 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+++..++.|-+.|...++.|+.+|..+
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666666666666666666554
No 163
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=65.90 E-value=47 Score=26.15 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=49.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 83 MISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 83 ~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.-.|..|--.+=.+=.+..+.++.++..|.........+.......+..|+.+...|..++..-+.+...+.+-|.
T Consensus 54 v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd 129 (155)
T 2efr_A 54 VTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMK 129 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666667777777777777777777777777777777777777776666555555555444443
No 164
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=65.89 E-value=54 Score=26.84 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
.+..|..++..|..++.....++..|+++++.+..+=..+.
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~ 61 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELK 61 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 44555555555555555555555555555555444433333
No 165
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=65.66 E-value=43 Score=25.59 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRV 132 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L 132 (185)
..+|+.++..|+..|..|..++..+..++..+
T Consensus 52 ~~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 52 AEELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888777555
No 166
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=65.64 E-value=12 Score=31.42 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
++..+.+.+..+...+..||..+++++..|+.++...+
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444445555555666666666666666666555443
No 167
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=65.37 E-value=35 Score=24.43 Aligned_cols=57 Identities=18% Similarity=0.352 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 86 NRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 86 NRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
|-.||=.+=.+-|+-+ ..++...+..|..+..++. ..+..|..|..++..|+.++..
T Consensus 14 eLQSALeaEIqAKQ~i---~EELs~vr~~ni~~eskL~-------eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSL---SREMEAIRTDNQNFASQLR-------EAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544444432 3355566666666665554 4455566666666666666655
No 168
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=65.26 E-value=7.3 Score=23.71 Aligned_cols=27 Identities=4% Similarity=0.068 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
..|..++..|..+|..|..|+..|+.-
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556666777777777777766653
No 169
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=65.25 E-value=12 Score=22.15 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 123 RFALHHCQRVRTDNDRLRSEHTILRRR 149 (185)
Q Consensus 123 ~~L~~~~~~L~~EN~~Lrae~~~Lr~r 149 (185)
..|.......++||-+|..+.+.|...
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 344555677788999998888877643
No 170
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=65.19 E-value=12 Score=23.04 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 126 LHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 126 ~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
..+...|..+|..|..|...|+.-|.
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 33444445555556666665555444
No 171
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=65.16 E-value=62 Score=28.14 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 139 LRSEHTILRRRLSEI 153 (185)
Q Consensus 139 Lrae~~~Lr~rL~~l 153 (185)
|..|+.+|.++|.++
T Consensus 448 ~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 448 LEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=64.87 E-value=82 Score=28.93 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..|..|-..|+.++.+|..++..+..-|...-+.
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 107 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566667777777777777766666554433
No 173
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=64.22 E-value=3.4 Score=27.16 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 130 QRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 130 ~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
..|+.+|..|...++.|..-+..|+
T Consensus 27 arlendnanlekdianlekdianle 51 (56)
T 3he4_A 27 ARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcccchHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544
No 174
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=63.84 E-value=14 Score=22.46 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
.|..+...|..+|..|..+...|+.-|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455556667777777777666544
No 175
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=63.73 E-value=60 Score=27.10 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
.+..|++++.+.+.|+..+...+...+++.
T Consensus 179 kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~ 208 (228)
T 3q0x_A 179 TCHDLSDDLSRTRDDRDSMVAQLAQCRQQL 208 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444333333
No 176
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=63.67 E-value=28 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 029952 111 LRMENRELSNRL 122 (185)
Q Consensus 111 L~~eN~~L~~~l 122 (185)
|+...+.|..++
T Consensus 25 Le~~v~~le~~L 36 (79)
T 3cvf_A 25 LEHQLRAMERSL 36 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 177
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=63.37 E-value=38 Score=24.22 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l 122 (185)
+.+.+|.-+|..|+.|--....++
T Consensus 26 qEi~~Lr~kv~elEnErlQyEkKL 49 (81)
T 3qh9_A 26 QELRHLKIKVEELENERNQYEWKL 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333
No 178
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=63.24 E-value=39 Score=24.22 Aligned_cols=58 Identities=16% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
++-..+..|..++..|+.+-..+..++..+...+......-..-.++++.|.+||.-|
T Consensus 41 ~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 41 QLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443333333333222222222334666677776554
No 179
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.88 E-value=44 Score=24.80 Aligned_cols=18 Identities=0% Similarity=0.124 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~ 144 (185)
..+..|+.+=..+|.+..
T Consensus 82 ~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 82 NKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHH
Confidence 333344444444444443
No 180
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=62.30 E-value=28 Score=22.38 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQ 130 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~ 130 (185)
..++..|+..|-.|...-+.|..-+.
T Consensus 9 rkkiarlkkdnlqlerdeqnlekiia 34 (52)
T 3he5_B 9 RKKIARLKKDNLQLERDEQNLEKIIA 34 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhHhhHHHHHH
Confidence 34444555555444444333333333
No 181
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.06 E-value=44 Score=24.54 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~ 126 (185)
-...+.+...+..++..|.
T Consensus 42 R~~aE~~~~~ie~ElEeLT 60 (97)
T 2eqb_B 42 RTKAEEEADKLNKEVEDLT 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444544444443
No 182
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=61.27 E-value=1e+02 Score=28.32 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT-----------DNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~-----------EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..+.+|..+...+..+-..|+.+.+.+..++..+.. +-..|+++..+|+.+|..+..-+.-.+-+
T Consensus 70 ~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~ 145 (501)
T 1wle_A 70 PGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQ 145 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666666555432 33589999999999999999888877443
No 183
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=61.07 E-value=48 Score=24.57 Aligned_cols=45 Identities=18% Similarity=0.229 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+.|+....+|...|..|...--.++..-..-.-++.+|+.|+.++
T Consensus 45 ~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (106)
T 1j1d_B 45 DQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVLRNRINDN 89 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHHHHHHHHh
Confidence 467777777888887777776677777767777888888888776
No 184
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=60.64 E-value=1e+02 Score=29.13 Aligned_cols=56 Identities=9% Similarity=0.077 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQQVTSAWPCNSAV 175 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~~~~~~~~~~~~~ 175 (185)
+|+.++..|++.+......=+.|+.-+.+++.++..|+.-|.. |-.+=-=||.-..
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdi---qirsCKgsCsr~~ 169 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDI---KIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHGGGTBSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhccccccchh
Confidence 4666666666666555555566777777777777777665554 3333334666543
No 185
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=60.48 E-value=10 Score=24.59 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l 122 (185)
..|++.|+.++..|+.....|...+
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888888888888777776544
No 186
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=60.46 E-value=36 Score=30.39 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEH 143 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~ 143 (185)
..|+.++..|+.+..+|..+ +..+..|+..+.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~-------~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRC-------NEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34444444444444444444 444444444444443
No 187
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=60.37 E-value=33 Score=25.50 Aligned_cols=62 Identities=24% Similarity=0.255 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHH------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 92 RSRMRKQKHLENLR------N-QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 92 RSR~RKk~~l~eLe------~-qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
.-|+.|+.+|.+-. . -.+.|+....+|...|..|.+.--.++..-..-.-|+.+|+.|+.++
T Consensus 21 ~e~EeKkkiLaER~~pL~id~l~~~~L~e~~keLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 21 TARETKKKVLAERRKPLNIDHLNEDKLRDKAKELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHTCCCCCCSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 34455677776511 1 23457777777888887777776677777666677888888887765
No 188
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=60.26 E-value=45 Score=23.98 Aligned_cols=64 Identities=9% Similarity=0.149 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYRQ 161 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~ 161 (185)
.+.+..|+.+-..+..+...+..+...+...-.....+-..++.+..++...+.++..-+.+-+
T Consensus 24 ~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 24 IQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444443333444444555555555555555555555443
No 189
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=60.15 E-value=51 Score=24.57 Aligned_cols=58 Identities=12% Similarity=0.137 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.+.+..+..|......|...+..+..++...+..|..|.++...|...+..|..-|.-
T Consensus 65 ~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 65 ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555556666666666666666666666666665555555554443
No 190
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=59.14 E-value=43 Score=23.46 Aligned_cols=54 Identities=20% Similarity=0.188 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
...+.++...+..|+.+...++..+......++.|..=.-.|-.|++..|.-|.
T Consensus 27 ~~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 27 ARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 446677777777777777777777777777777777777777777777776554
No 191
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=59.08 E-value=73 Score=26.04 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
.|+.++..|..+|..|...+..+..++..+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555554444444443
No 192
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=58.31 E-value=17 Score=29.55 Aligned_cols=29 Identities=14% Similarity=0.100 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
..+.+|..++.+|+.+|..|+.+.+...+
T Consensus 152 d~~~~L~~~n~~LqkeNeRL~~E~n~~l~ 180 (184)
T 3w03_C 152 DTIAENQAKNEHLQKENERLLRDWNDVQG 180 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544433
No 193
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=58.25 E-value=56 Score=24.46 Aligned_cols=43 Identities=19% Similarity=0.096 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRS 141 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lra 141 (185)
.|+-+||+.-.+|+...+.....+..+..++......|..|..
T Consensus 56 ~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE~ 98 (111)
T 2v66_B 56 KYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLES 98 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 194
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=57.48 E-value=34 Score=29.88 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
..+-..|+..+..+..+|..|.+.|.
T Consensus 25 ~~~i~~L~~~l~~~~~~i~~l~~~i~ 50 (323)
T 1lwu_C 25 DAQIQELSEMWRVNQQFVTRLQQQLV 50 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444455555555554443
No 195
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.57 E-value=21 Score=32.03 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.|..++..|..|+..|+.+...|+.++..+..-+
T Consensus 53 ~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~ 86 (428)
T 4b4t_K 53 KLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEV 86 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444433
No 196
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=56.51 E-value=61 Score=24.38 Aligned_cols=53 Identities=17% Similarity=0.267 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNR----LRFALHHCQRVRTDNDRL-------RSEHTILRRRLSE 152 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~----l~~L~~~~~~L~~EN~~L-------rae~~~Lr~rL~~ 152 (185)
.++.|..+|..|+.+...+..+ +..|+.++..|++|...= +.++..|+..+..
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555554444333 333344444444444443 3334445544443
No 197
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=55.78 E-value=71 Score=29.34 Aligned_cols=64 Identities=16% Similarity=0.101 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT---DNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~---EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
.+.+|..+...+..+-..|+.+.+.+..++..+.. +-..|+++..+|+.+|..+...+...+-+
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444332 23468888888888888888777766433
No 198
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=55.71 E-value=40 Score=22.02 Aligned_cols=46 Identities=9% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.++.+|..+.+.|..++..|......+..+-..-+.|.+.--.||.
T Consensus 4 aki~~Lss~V~~L~~kVdqLssdV~al~~~v~~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 4 AKADQASSDAQTANAKADQASNDANAARSDAQAAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555555555555555555555555544444444444444443
No 199
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.66 E-value=11 Score=35.14 Aligned_cols=62 Identities=16% Similarity=0.223 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
....+|+.++.+++.+.......+..-.+....|+.+-.....+...|..+-..+.+...-+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l 396 (575)
T 2i1j_A 335 KKQQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRL 396 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------------------
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33577888888888888888777777777666777777777666666666665555554444
No 200
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=52.65 E-value=31 Score=23.61 Aligned_cols=61 Identities=21% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 88 ESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 88 ESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
.+-|+-|.+=...+..|..-|-.+...-..=..-|....+-+..|..++..|..++..|++
T Consensus 18 ~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~~ 78 (80)
T 1hlo_A 18 ALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444556677776665543100001111222334455566666666666666654
No 201
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=52.61 E-value=34 Score=20.20 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
.|..+|..|...|-.-+.+++.|+++
T Consensus 5 alkkrvqalkarnyaakqkvqalrhk 30 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRHK 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444444444444444444433
No 202
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.32 E-value=54 Score=25.43 Aligned_cols=10 Identities=20% Similarity=0.125 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 029952 111 LRMENRELSN 120 (185)
Q Consensus 111 L~~eN~~L~~ 120 (185)
...+...|..
T Consensus 44 ~~~e~~~L~~ 53 (135)
T 2e7s_A 44 RDDEVKRLRE 53 (135)
T ss_dssp HHHHHHTHHH
T ss_pred hHHHHHHHHH
Confidence 3333333333
No 203
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=51.18 E-value=51 Score=27.72 Aligned_cols=62 Identities=18% Similarity=0.245 Sum_probs=32.5
Q ss_pred HHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESA-RRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 81 RR~lsNRESA-RRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
-.-++|||.. +.+|.||+.-.+++ ..|+... --..++..|.+++...++||..-.+++..++
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I----~kLk~k~-P~s~kl~~LeqELvraEae~lvaEAqL~n~k 158 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEI----AHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSNIT 158 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHC-TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH----HHHhccC-CCCchHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 3567888876 44555554433333 2333211 1123456666666666666665555554443
No 204
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=51.15 E-value=49 Score=22.07 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
-.|..+|..|+.+|..|...++
T Consensus 13 YaLkDqV~eL~qe~k~m~k~lE 34 (56)
T 2w6b_A 13 YALKDEVQELRQDNKKMKKSLE 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666655443
No 205
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=51.04 E-value=45 Score=24.75 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
++..|......|..|+..|+.
T Consensus 92 ~~~~l~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 92 RQKKLEHANRHLLLRVQELEM 112 (118)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666655543
No 206
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=50.47 E-value=34 Score=20.70 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.|..+...|..+|..|..|+..|+.-|+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3444555556666666666666655443
No 207
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=50.29 E-value=0.23 Score=36.53 Aligned_cols=22 Identities=36% Similarity=0.350 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 029952 77 ERKRRRMISNRESARRSRMRKQ 98 (185)
Q Consensus 77 eRk~RR~lsNRESARRSR~RKk 98 (185)
-|..||.-+||.+|+++|.||.
T Consensus 65 IrdiRRRgKNkvAAqnCRKRKl 86 (90)
T 2lz1_A 65 IRDIRRRGKNKVAAQNCRKRKL 86 (90)
T ss_dssp HHHHHHHSCSCCCCCCCSCCCC
T ss_pred HHHHHHhhhhHHHHHHcchhhc
Confidence 4557888999999999999874
No 208
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.19 E-value=62 Score=30.08 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.+..|+..+.+|..+..++..+++
T Consensus 32 Ye~~~ae~~a~n~~i~aeNeaikk 55 (497)
T 3iox_A 32 YEAAVAANNAANAALTAENTAIKK 55 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Confidence 334444444444444444443333
No 209
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=49.07 E-value=57 Score=21.83 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=21.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 82 RMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTD 135 (185)
Q Consensus 82 R~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~E 135 (185)
=..+||+-|-.-=.. .+++|...+..-..+....+.++..++..++.|..|
T Consensus 21 ia~knr~EaE~~y~~---k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~e 71 (77)
T 3trt_A 21 VAAKNLQEAEEWYKS---KFADLSEAANRNNDALRQAKQESTEYRRQVQSLTME 71 (77)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544332211 234455444444444444444444444444433333
No 210
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=48.66 E-value=73 Score=28.69 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
.|..+-..|+.++.+|..++..+..-|...-+.
T Consensus 73 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (455)
T 2dq0_A 73 ELLAKSREIVKRIGELENEVEELKKKIDYYLWR 105 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666666666666666554433
No 211
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=48.41 E-value=41 Score=23.11 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~ 124 (185)
|...+.+|+..+..-..++++|+.++..
T Consensus 23 Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 23 KEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788887777777777666665543
No 212
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=48.36 E-value=82 Score=29.68 Aligned_cols=37 Identities=19% Similarity=0.295 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
+|+.++..|+.+...-...|..|+..+..+..+=++|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333344444444444333333333
No 213
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.28 E-value=82 Score=23.41 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.1
Q ss_pred hhHHHH
Q 029952 74 VIDERK 79 (185)
Q Consensus 74 ~~deRk 79 (185)
+.+-|+
T Consensus 40 i~elrr 45 (131)
T 3tnu_A 40 ISELRR 45 (131)
T ss_dssp -CHHHH
T ss_pred HHHHHH
Confidence 334444
No 214
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=48.17 E-value=20 Score=25.11 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 136 NDRLRSEHTILRRRL 150 (185)
Q Consensus 136 N~~Lrae~~~Lr~rL 150 (185)
|.+|..++..|+..|
T Consensus 45 narL~eq~~lLK~EI 59 (71)
T 3bbp_D 45 NAILMEQIKLLKSEI 59 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 215
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=48.04 E-value=1e+02 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.061 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQR 131 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~ 131 (185)
+.+...+-+.+++||..+++++...+..+..
T Consensus 36 ~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~ 66 (497)
T 3iox_A 36 VAANNAANAALTAENTAIKKRNADAKADYEA 66 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666677777777766666555443
No 216
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=47.80 E-value=48 Score=23.67 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
++.+.+.+...|+..|..|..+++.|.
T Consensus 50 r~~e~e~r~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 50 RAKDLENRQKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334444445555555555555544443
No 217
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.80 E-value=37 Score=20.40 Aligned_cols=24 Identities=4% Similarity=-0.144 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 125 ALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 125 L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
|..+...|..+|..|..|+..|+.
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334444455556566666665554
No 218
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=47.30 E-value=73 Score=22.54 Aligned_cols=48 Identities=17% Similarity=0.181 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
++.|-.+-.+|..--..|----..|..+...|..|+..|+.|+..+++
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444444444444333333333333444444444444444444444433
No 219
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.19 E-value=57 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRT 134 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~ 134 (185)
..|+.-|..|+..|..|...+..|...+..|+.
T Consensus 20 aklenivarlendnanlekdianlekdianler 52 (56)
T 3he4_A 20 AKLENIVARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 456677777777887777777766666655544
No 220
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=46.60 E-value=1e+02 Score=25.63 Aligned_cols=41 Identities=17% Similarity=0.202 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
+.++..+.+++.....|+..+++.+++.|+.+..++.....
T Consensus 177 K~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 177 KGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444444455556667777777777777777777665543
No 221
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.32 E-value=20 Score=27.21 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 029952 107 QLNRLRMENREL 118 (185)
Q Consensus 107 qV~~L~~eN~~L 118 (185)
+|..|..++..|
T Consensus 33 ~v~~l~~e~k~l 44 (171)
T 2zvf_A 33 TVERFFEEWKDQ 44 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 222
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.26 E-value=1.4e+02 Score=26.83 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 117 ELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 117 ~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
.|+.++..|++.+..-...=..|+.-+..++.++..|+.-|
T Consensus 117 eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333445555555555555555444
No 223
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=46.13 E-value=92 Score=23.38 Aligned_cols=46 Identities=11% Similarity=0.214 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.|..|+.+..-....+..=+..-..+..|...|..++..|..++..
T Consensus 63 ~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 63 TVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666777788888888888777643
No 224
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=46.11 E-value=1.2e+02 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
-+++...|..++..|+.+...|..+++.+..
T Consensus 137 ~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~ 167 (213)
T 1ik9_A 137 NQAKNEHLQKENERLLRDWNDVQGRFEKAVS 167 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666665554
No 225
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=46.00 E-value=12 Score=24.52 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENREL 118 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L 118 (185)
..|+++|+.+|..|+.....|
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 478888888888887765544
No 226
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.56 E-value=28 Score=29.85 Aligned_cols=31 Identities=16% Similarity=0.193 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 105 RNQLNRLRMENRELSNRLRFALHHCQRVRTD 135 (185)
Q Consensus 105 e~qV~~L~~eN~~L~~~l~~L~~~~~~L~~E 135 (185)
+.+++.|+.+|+.|..+++.|......+...
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~ 214 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERSTANKA 214 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4466666666666666666665555444443
No 227
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.46 E-value=46 Score=19.67 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
||..+..|..-.++|..+++.|.+
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544433
No 228
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=45.43 E-value=72 Score=28.32 Aligned_cols=22 Identities=14% Similarity=0.104 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 138 RLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 138 ~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.|+++...|+.++..+..-+..
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 68 ALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 229
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=45.28 E-value=47 Score=28.45 Aligned_cols=29 Identities=21% Similarity=0.115 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
++++.|+.+...|+.|..+|......+..
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 35555555555555555555554444433
No 230
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.83 E-value=62 Score=23.14 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 029952 138 RLRSEHTILRRRLSEIRQILLYRQL 162 (185)
Q Consensus 138 ~Lrae~~~Lr~rL~~l~~il~~~~~ 162 (185)
.-+.+...|..++..+..-+...|.
T Consensus 92 ir~~q~~~L~~kf~e~m~~y~~~q~ 116 (127)
T 1ez3_A 92 IRKTQHSTLSRKFVEVMSEYNATQS 116 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467778888888887776665543
No 231
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=44.75 E-value=83 Score=22.45 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
+=+.-...++.++.+.+..|+.|..++..++.++..|.
T Consensus 35 ~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eelq 72 (81)
T 1wt6_A 35 AIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888888888888777777665543
No 232
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=43.13 E-value=89 Score=22.35 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
-..|-.++..|+.+...|..++..+......+..+-...-.+...++..+..+..-+..+
T Consensus 20 E~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl 79 (96)
T 3q8t_A 20 EERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666655555555555555555555444433
No 233
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.84 E-value=1.8e+02 Score=26.56 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 137 DRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 137 ~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
..|+..+..|+.+|..|+..+...
T Consensus 171 ~~L~~~~~~l~~ki~~l~~~~~~~ 194 (464)
T 1m1j_B 171 RVLRAVIDSLHKKIQKLENAIATQ 194 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888776654
No 234
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=42.64 E-value=1.3e+02 Score=23.95 Aligned_cols=56 Identities=20% Similarity=0.145 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMEN-------RELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN-------~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+.+-|.+|.-..+....++..|+..- .+...++...++.+. .-|..|+.++..|-.
T Consensus 149 ~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye---~ln~~L~~eLp~l~~ 211 (251)
T 2fic_A 149 RIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFE---EMNVDLQEELPSLWN 211 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33444445555555545555543221 223344444444443 447888888877643
No 235
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=42.50 E-value=83 Score=21.84 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVR 133 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~ 133 (185)
|...|..|..|+..|..++..+.+.+..+.
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~ 31 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLK 31 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666555555555554443
No 236
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=42.31 E-value=1.7e+02 Score=26.83 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=19.7
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 133 RTD-NDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 133 ~~E-N~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
..+ -..|+.++.+|..++..+..-|...-+.
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444 5667777777777777776666554433
No 237
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.27 E-value=45 Score=29.84 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRL 122 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l 122 (185)
+|..++..|+.+...|..+.
T Consensus 46 dl~~~lk~le~~~~~L~~e~ 65 (428)
T 4b4t_K 46 DIYFKLKKLEKEYELLTLQE 65 (428)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444443333
No 238
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=42.24 E-value=24 Score=24.16 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENREL 118 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L 118 (185)
.|+..|+.++..|+.++..|
T Consensus 57 ~YI~~L~~~~~~L~~e~~~L 76 (80)
T 1hlo_A 57 EYIQYMRRKNHTHQQDIDDL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 239
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=41.89 E-value=12 Score=27.68 Aligned_cols=54 Identities=17% Similarity=0.278 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLR---MENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~---~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
|+..+++|..++..++ ..+..|+.++......+..-.+.-..+-.+...|...|
T Consensus 36 KQ~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~aERaaREk~~~EKe~L~~ql 92 (96)
T 3fx0_A 36 KQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQL 92 (96)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 6666777776666666 44455666666666655554444444444444444433
No 240
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.84 E-value=72 Score=23.99 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 127 ~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
..+..|..|+..|+.++..|+.++.
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 241
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=40.59 E-value=94 Score=24.68 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHT 144 (185)
Q Consensus 133 ~~EN~~Lrae~~ 144 (185)
..|-..|+.++.
T Consensus 119 ~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 119 AKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 242
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=40.22 E-value=1e+02 Score=22.11 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELS 119 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~ 119 (185)
+..|+.+...|..+...+.
T Consensus 10 i~~L~~q~~~L~~ei~~~~ 28 (85)
T 3viq_B 10 VHLLEQQKEQLESSLQDAL 28 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444433
No 243
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=40.16 E-value=2.1e+02 Score=25.70 Aligned_cols=63 Identities=13% Similarity=0.088 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 101 LENLRNQLNRLRMENRELSNRLRFALHHCQRVRT---DNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~---EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+.+|..+...+..+-..|+.+.+.+..++..+.. +-..|+++...|+.++..+..-+.-..-+
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544322 23578888888888888888888777443
No 244
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=40.01 E-value=1.6e+02 Score=26.07 Aligned_cols=61 Identities=13% Similarity=0.113 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQ----------RVRTDNDRLRSEHTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~----------~L~~EN~~Lrae~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+|..+...+..+-..|+.+.+.+..++. .+..+-..|+.++.+|..++..+..-|...-+.
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLW 104 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443332 345566677777777777777777777665544
No 245
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.93 E-value=71 Score=20.29 Aligned_cols=31 Identities=10% Similarity=0.076 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 118 L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+..++..+...+..+..+=...+.++..+..
T Consensus 24 ~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 24 KTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333334444444433
No 246
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.85 E-value=49 Score=22.74 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.+..|+.++..=..++.+|+..|..+.+++.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555566666677777777777777775
No 247
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=38.82 E-value=95 Score=21.45 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 96 RKQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRL 150 (185)
Q Consensus 96 RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL 150 (185)
|-...+.++...+..|+.+-+.++..+......++.|..=.-.|-.|++..|.-|
T Consensus 23 ~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLL 77 (84)
T 1gk4_A 23 NFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344566667777777777777777777666666666666666667776666544
No 248
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=38.75 E-value=74 Score=20.19 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLR 140 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lr 140 (185)
.++++..++..+..+-..+...+..+...+..+..+=..|+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 13 QVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444333333333
No 249
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=38.74 E-value=86 Score=20.91 Aligned_cols=17 Identities=24% Similarity=0.385 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 139 LRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 139 Lrae~~~Lr~rL~~l~~ 155 (185)
.+.|+.+|+..+..|.-
T Consensus 54 ~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 54 AKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555566655555543
No 250
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=38.31 E-value=77 Score=23.79 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSN 120 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~ 120 (185)
+++.+|+.+|+.++..+++|++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLKe 25 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLKE 25 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666555555543
No 251
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=37.69 E-value=1.2e+02 Score=24.17 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 92 RSRMRKQKHLENLRNQL-NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 92 RSR~RKk~~l~eLe~qV-~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
+-|.+.+.++..-...+ ..|+.....|......+......++.+-..|..++..|.....
T Consensus 27 ~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~ 87 (174)
T 2p22_A 27 EDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRA 87 (174)
T ss_dssp HHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444333333 3334445555555555555555555555555555555555333
No 252
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=37.60 E-value=84 Score=20.47 Aligned_cols=55 Identities=7% Similarity=0.077 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~i 156 (185)
..|+.++..++.--..+..++..+.-....+..++...+..+..|..+...+.+.
T Consensus 8 ~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 8 ESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 3444444444443333444444444444444444444444455555555554443
No 253
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=37.38 E-value=60 Score=19.60 Aligned_cols=21 Identities=19% Similarity=0.420 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~ 123 (185)
...+.+++|+.+|..|..++.
T Consensus 11 a~qqDIddlkrQN~~Le~Qir 31 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVR 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHHHHHHHHHHHHHHHH
Confidence 344556666666666665553
No 254
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=37.15 E-value=1e+02 Score=21.25 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
|..+...++.....|..++..++..+.....|...|..-...|-..+..-+.+|.
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkLLE 57 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666666666666666666666666665555555555555554443
No 255
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=37.07 E-value=1.5e+02 Score=23.76 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 106 NQLNRLRMENRELSNR 121 (185)
Q Consensus 106 ~qV~~L~~eN~~L~~~ 121 (185)
..|+.|+.+|..|..+
T Consensus 135 rtV~kLqkeiD~LEDe 150 (175)
T 3mud_A 135 DTTAKNEKSIDDLEEK 150 (175)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444333333
No 256
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=36.01 E-value=82 Score=19.87 Aligned_cols=30 Identities=10% Similarity=0.330 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 126 LHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 126 ~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+++..+..|=+.-+.++.+|+.|+..|+.
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555666666666666554
No 257
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.83 E-value=76 Score=20.41 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNR 110 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~ 110 (185)
|-||=.|-+..+++||.++..
T Consensus 10 AERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 10 LENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444443333
No 258
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=35.63 E-value=1e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.189 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 111 LRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 111 L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
|+++-..-..+.+.|......+.+||..|+..+..|++
T Consensus 35 ~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeG 72 (206)
T 3oa7_A 35 LRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEG 72 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccC
Confidence 33333333444444444555555566555555555443
No 259
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=35.61 E-value=2.6e+02 Score=25.59 Aligned_cols=24 Identities=4% Similarity=-0.029 Sum_probs=18.2
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHhh
Q 029952 140 RSE-HTILRRRLSEIRQILLYRQLQ 163 (185)
Q Consensus 140 rae-~~~Lr~rL~~l~~il~~~~~~ 163 (185)
+++ ...|+.++..+...+...+-+
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~ 133 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEE 133 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777 888888888888887766433
No 260
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=35.26 E-value=1e+02 Score=23.17 Aligned_cols=32 Identities=3% Similarity=0.045 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.|.++...+..+-..|......|..++..+.+
T Consensus 99 ~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 130 (148)
T 3gpv_A 99 LMKQQEANVLQLIQDTEKNLKKIQQKIAKYED 130 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333444444444444444433
No 261
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=35.11 E-value=1.6e+02 Score=22.85 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 029952 138 RLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 138 ~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
.+++....|..++..|.++..++
T Consensus 181 ~I~~~~~~l~~~W~~L~~L~~~~ 203 (210)
T 3pdy_A 181 TVESFQAALQTQWSWMLQLCCCI 203 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666554
No 262
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=34.90 E-value=1.3e+02 Score=24.95 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 116 RELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 116 ~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+.|+..+..+...+..|..--+.|++|+..|+.+|+.|+
T Consensus 33 ~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLe 71 (206)
T 3oa7_A 33 QQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLE 71 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcc
Confidence 455555556666666666666666666666666666654
No 263
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=34.35 E-value=1.9e+02 Score=23.66 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L~~~ 121 (185)
++.|+.++..|+.....+..+
T Consensus 68 l~~l~~e~~el~d~~lR~~AE 88 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYAD 88 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444443333333333
No 264
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=33.19 E-value=1.3e+02 Score=21.44 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 124 FALHHCQRVRTDNDRLRSEHT 144 (185)
Q Consensus 124 ~L~~~~~~L~~EN~~Lrae~~ 144 (185)
.|...+..+..|+..|+.++.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~ 70 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENK 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 265
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=32.27 E-value=50 Score=23.06 Aligned_cols=14 Identities=21% Similarity=0.100 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHT 144 (185)
Q Consensus 131 ~L~~EN~~Lrae~~ 144 (185)
.|..+|..|+.|+-
T Consensus 47 rL~eq~~lLK~EIR 60 (71)
T 3bbp_D 47 ILMEQIKLLKSEIR 60 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 266
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.04 E-value=28 Score=31.26 Aligned_cols=17 Identities=6% Similarity=0.169 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLS 151 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~ 151 (185)
|+..|+.++.+++.++.
T Consensus 54 e~~~~~~~~~~~~~~i~ 70 (434)
T 4b4t_M 54 ENNVMLEKIKDNKEKIK 70 (434)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344443333
No 267
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=31.77 E-value=2.2e+02 Score=23.55 Aligned_cols=20 Identities=40% Similarity=0.699 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELS 119 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~ 119 (185)
.++.|+.+++.|+.+|..|+
T Consensus 123 ~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555444
No 268
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=31.70 E-value=1.5e+02 Score=22.17 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 137 DRLRSEHTILRRRLSEIRQI 156 (185)
Q Consensus 137 ~~Lrae~~~Lr~rL~~l~~i 156 (185)
..|......|..++..+...
T Consensus 98 ~~L~~~~~~L~~~i~~~~~~ 117 (142)
T 3gp4_A 98 DVMQEALDRLDFKIDNYDTH 117 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444333
No 269
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=31.69 E-value=1e+02 Score=25.14 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 101 LENLRNQLNRLRMENREL 118 (185)
Q Consensus 101 l~eLe~qV~~L~~eN~~L 118 (185)
+.+|+.+..+|+.||++|
T Consensus 163 i~~L~a~N~hLqkENeRL 180 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERL 180 (186)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444333
No 270
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=31.00 E-value=1.2e+02 Score=22.16 Aligned_cols=15 Identities=13% Similarity=0.217 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRM 113 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~ 113 (185)
..+.-|+.+|..++.
T Consensus 40 E~i~vLk~Qv~IY~~ 54 (94)
T 3jsv_C 40 ETVPVLKAQADIYKA 54 (94)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 271
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=30.95 E-value=1.8e+02 Score=22.29 Aligned_cols=48 Identities=15% Similarity=0.166 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.+.|+....+|...+..|.++--.++..-..-.-|+.+|+.|+.++..
T Consensus 60 ~~~L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 60 FAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 455667777777777777766666666666667788888888887754
No 272
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=30.80 E-value=1.3e+02 Score=20.47 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 138 RLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 138 ~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.++..+..|..|+..|.....
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~ 102 (118)
T 3uul_A 82 EIQEQMTLLNARWEALRVESM 102 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 273
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=30.72 E-value=1.8e+02 Score=22.87 Aligned_cols=43 Identities=23% Similarity=0.231 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQKHLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
+++..-|.-.+.+-++|++|+.+|..|...+ +.|..++..+..
T Consensus 8 ~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf----knLv~RN~~~e~ 50 (155)
T 2aze_A 8 QNLEVERQRRLERIKQKQSQLQELILQQIAF----KNLVQRNRHAEQ 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh
No 274
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=30.29 E-value=1.6e+02 Score=21.49 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 122 LRFALHHCQRVRTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 122 l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l 153 (185)
+..++..+..+..+|..|...+..|......|
T Consensus 70 l~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L 101 (107)
T 2no2_A 70 LQVLQGSLETSAQSEANWAAEFAELEKERDSL 101 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33355555556666666666665555444433
No 275
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=30.25 E-value=1.5e+02 Score=21.18 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
..+.++...+..|+.+-+.++..+......+..|..=.-.|..|++..+.
T Consensus 37 ~e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrk 86 (95)
T 3mov_A 37 KEKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRK 86 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666666655555555555555556666665554
No 276
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.03 E-value=1.7e+02 Score=21.71 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 142 EHTILRRRLSEIRQILLY 159 (185)
Q Consensus 142 e~~~Lr~rL~~l~~il~~ 159 (185)
|....=.||.+++-++.-
T Consensus 40 ERDFYF~KLRdIEiLcQe 57 (106)
T 4e61_A 40 EREFYFNKLRDIEILVHT 57 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 277
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=30.01 E-value=1.4e+02 Score=20.78 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
+|..++..-+.|..+|..-++.++.++-.-..=|..|..+..-++..+.+|+
T Consensus 7 eL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~ 58 (74)
T 2q6q_A 7 ELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLE 58 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3334444444444444444444444444444445555555555555554444
No 278
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.29 E-value=1.5e+02 Score=20.68 Aligned_cols=10 Identities=40% Similarity=0.810 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 029952 142 EHTILRRRLS 151 (185)
Q Consensus 142 e~~~Lr~rL~ 151 (185)
|..-|.+||.
T Consensus 61 ENNlL~~rl~ 70 (75)
T 3a7o_A 61 ENNVLQQKLS 70 (75)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 279
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=28.16 E-value=2.2e+02 Score=22.35 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
|=..||+|+..+.+.+....+.|..-
T Consensus 61 Ei~~Lrae~~~~QRn~~K~~~~Lkrn 86 (167)
T 4gkw_A 61 EIGKLRAELGTAQRNLEKADQLLKRN 86 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 34455555555566665555555544
No 280
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=27.37 E-value=1.9e+02 Score=21.46 Aligned_cols=68 Identities=10% Similarity=0.172 Sum_probs=33.8
Q ss_pred HHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 81 RRMISNRESARRSRMRKQ---KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 81 RR~lsNRESARRSR~RKk---~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~ 148 (185)
+|.-+|+.|-+.--.+=. +.+.+-..+++..+.+..+=..++..+..+...|...|--|..|++.|+.
T Consensus 34 ~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 34 GRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666666552222111 11222223344444444444444455555666666677777777666554
No 281
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=27.05 E-value=1.4e+02 Score=20.38 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALHHCQRVRT 134 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~ 134 (185)
+.+++..++..|+.|-.-.-.++..+..-|+..+.
T Consensus 17 Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e~ 51 (75)
T 3mtu_A 17 DKENALDRAEQAEADKDFYFGKLRNIELICQENEG 51 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44555556666666555555555555555544433
No 282
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=27.03 E-value=81 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.363 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 139 LRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 139 Lrae~~~Lr~rL~~l~~il~ 158 (185)
|..++..|+.+|..+...|.
T Consensus 21 l~~~~~~l~~~l~~~~~~l~ 40 (182)
T 3kqg_A 21 LNTKIRALQGSLENMSKLLK 40 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555443
No 283
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=26.76 E-value=2.5e+02 Score=22.60 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 107 QLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 107 qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
-...|+.-..+|...|..|...--.++..-..-.-++.+|+.|+.++..
T Consensus 59 se~~L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 59 GFAELQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 3456777777788887777777666776666667788888888888854
No 284
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.76 E-value=80 Score=28.17 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENREL 118 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L 118 (185)
++.+++.++.........|
T Consensus 26 ~i~~~~~~~~~~~~~~~~l 44 (405)
T 4b4t_J 26 KIQETELKIRSKTENVRRL 44 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555544444333333
No 285
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=26.58 E-value=1.7e+02 Score=24.45 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMEN 115 (185)
Q Consensus 102 ~eLe~qV~~L~~eN 115 (185)
+++|.++..|+...
T Consensus 9 d~~EErIs~le~rl 22 (233)
T 2yko_A 9 DQLEERVSAAEDEI 22 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 286
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=26.48 E-value=1.2e+02 Score=23.35 Aligned_cols=16 Identities=25% Similarity=0.052 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENREL 118 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L 118 (185)
.||+++..++.....+
T Consensus 4 ~l~~~~~~~~~~~~~~ 19 (192)
T 2gkw_A 4 LLESQLSRHDQMLSVH 19 (192)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444433333
No 287
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=26.47 E-value=2.5e+02 Score=24.21 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENREL 118 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L 118 (185)
|+++|+.+++.|..+..++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~ 266 (426)
T 1lrz_A 248 YIKELNEERDILNKDLNKA 266 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 288
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=26.43 E-value=2e+02 Score=21.43 Aligned_cols=6 Identities=33% Similarity=0.141 Sum_probs=2.1
Q ss_pred HHHHHH
Q 029952 145 ILRRRL 150 (185)
Q Consensus 145 ~Lr~rL 150 (185)
.|..++
T Consensus 49 ~L~~~~ 54 (112)
T 1x79_B 49 ALVLRA 54 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 289
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=26.34 E-value=1e+02 Score=17.89 Aligned_cols=19 Identities=16% Similarity=0.254 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNR 121 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~ 121 (185)
.|+.+...|+..-+.|..+
T Consensus 5 alekkcaalesklqalekk 23 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKK 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444433333333
No 290
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=26.28 E-value=1.8e+02 Score=20.68 Aligned_cols=40 Identities=13% Similarity=0.142 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 97 KQKHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILR 147 (185)
Q Consensus 97 Kk~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr 147 (185)
-..|+..|..++..+..+... ...++..|..|.-.+.+|.
T Consensus 37 svdYI~~Lq~e~~r~~e~e~r-----------~k~le~~n~~l~~riqELE 76 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDLENR-----------QKKLEHANRHLLLRVQELE 76 (83)
T ss_dssp HHHHHHHHHHTHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhHHHHHHHHHHH
Confidence 356777776665555444332 3456667766665555544
No 291
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=25.93 E-value=4e+02 Score=24.71 Aligned_cols=6 Identities=0% Similarity=0.185 Sum_probs=2.2
Q ss_pred HHHHHH
Q 029952 152 EIRQIL 157 (185)
Q Consensus 152 ~l~~il 157 (185)
.|..-|
T Consensus 571 ~~~~ei 576 (592)
T 1f5n_A 571 IMKNEI 576 (592)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 292
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=25.93 E-value=2.7e+02 Score=22.67 Aligned_cols=29 Identities=14% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 95 MRKQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 95 ~RKk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
.||.+-++-|..++..|+.+-..|..++.
T Consensus 15 ~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~ 43 (190)
T 3thf_A 15 QKMDELIKHLNQKIVSLKREQQTISEECS 43 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677766666666555543
No 293
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.71 E-value=1.4e+02 Score=23.58 Aligned_cols=28 Identities=11% Similarity=0.117 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 128 ~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
.|..+.++-+.|+.+...+++.+.....
T Consensus 101 ~Yak~~a~~~q~~~d~~~~~~~~~kA~~ 128 (158)
T 3tul_A 101 GYAQAEAAVEQAGKEATEAKEALDKATD 128 (158)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666677777776666655443
No 294
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.53 E-value=1.4e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.349 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFALHHC 129 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~~~~ 129 (185)
..|..++..|..+-+.|-..+..+.+.+
T Consensus 9 ~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 9 EGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333333
No 295
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=25.53 E-value=1.6e+02 Score=19.99 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 76 DERKRRRMISNRESARRSRMRKQKHLENLRNQLNRL 111 (185)
Q Consensus 76 deRk~RR~lsNRESARRSR~RKk~~l~eLe~qV~~L 111 (185)
+++..+|+...-.+.|+-|.|=...+++|..-|-..
T Consensus 3 ~~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~ 38 (73)
T 4h10_A 3 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTC 38 (73)
T ss_dssp --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred hHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcccc
Confidence 345566666777788888888788888887766653
No 296
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=25.40 E-value=2.5e+02 Score=22.15 Aligned_cols=12 Identities=25% Similarity=0.360 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 029952 139 LRSEHTILRRRL 150 (185)
Q Consensus 139 Lrae~~~Lr~rL 150 (185)
|-.|+.+|+.++
T Consensus 118 L~~Ei~~Lr~qL 129 (175)
T 3lay_A 118 VAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 297
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=25.31 E-value=46 Score=24.66 Aligned_cols=20 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 129 CQRVRTDNDRLRSEHTILRR 148 (185)
Q Consensus 129 ~~~L~~EN~~Lrae~~~Lr~ 148 (185)
...|+.+|..|...+.+|..
T Consensus 93 ~~~l~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 93 QKKLEHANRHLLLRVQELEM 112 (118)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666665543
No 298
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=25.30 E-value=1.7e+02 Score=20.29 Aligned_cols=36 Identities=11% Similarity=0.120 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 119 SNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 119 ~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
...-..+..+++.++.+-..|...+..+..||..+.
T Consensus 34 ~~mR~ivldRlA~lEqdE~~LE~~l~~i~~rle~~q 69 (72)
T 2xu6_A 34 RQKKEKLLGKIANIEQNQLMLEDNLKQIDDRLDFLE 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 333344455566677777777777777777766543
No 299
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=25.28 E-value=1.3e+02 Score=24.41 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFALH 127 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L~~ 127 (185)
.+.-.=.++..|+.+|..|.++++.|..
T Consensus 155 Li~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 155 LICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556777777777777665555444
No 300
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=25.22 E-value=1.6e+02 Score=19.82 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 138 RLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 138 ~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
.++..+..|..|+..|.....-
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~~~ 103 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVASME 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555544443
No 301
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=24.95 E-value=2.1e+02 Score=25.77 Aligned_cols=41 Identities=24% Similarity=0.309 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 99 KHLENLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRL 139 (185)
Q Consensus 99 ~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~L 139 (185)
+|.++|+.++..|+.....-...|..|+..+..+..+=.+|
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 55666777666666554443334444444444444333333
No 302
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=24.66 E-value=3e+02 Score=22.88 Aligned_cols=31 Identities=6% Similarity=-0.012 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 98 QKHLENLRNQLNRLRMENRELSNRLRFALHH 128 (185)
Q Consensus 98 k~~l~eLe~qV~~L~~eN~~L~~~l~~L~~~ 128 (185)
.+.+.+|+.++..|+.+...+..++..+...
T Consensus 225 ~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~ 255 (357)
T 3rrk_A 225 GKAAARMKERARLAPEELVGIREEVARLSRE 255 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666666555554
No 303
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=24.30 E-value=2.2e+02 Score=21.01 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 103 NLRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILL 158 (185)
Q Consensus 103 eLe~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~ 158 (185)
.|..+.++|..+-+.-...+....+.+..|......|...+..|..+|........
T Consensus 45 ~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~ 100 (129)
T 2fxo_A 45 SLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNA 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444443333333334444555556666666666666666666666555543
No 304
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.62 E-value=1.7e+02 Score=19.53 Aligned_cols=25 Identities=12% Similarity=0.139 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 102 ENLRNQLNRLRMENRELSNRLRFAL 126 (185)
Q Consensus 102 ~eLe~qV~~L~~eN~~L~~~l~~L~ 126 (185)
..|-.+|.+|+..+.+...++..|.
T Consensus 21 ~~L~~kv~~Le~~c~e~eQEieRL~ 45 (58)
T 3a2a_A 21 VQLAAKIQHLEFSCSEKEQEIERLN 45 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888877777777766543
No 305
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.37 E-value=86 Score=28.07 Aligned_cols=21 Identities=19% Similarity=0.477 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 133 RTDNDRLRSEHTILRRRLSEI 153 (185)
Q Consensus 133 ~~EN~~Lrae~~~Lr~rL~~l 153 (185)
..|+.++..|...|+.++...
T Consensus 45 ~~e~~r~~~e~~~~~~~~~~~ 65 (434)
T 4b4t_M 45 RSELQRLSHENNVMLEKIKDN 65 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333
No 306
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=23.29 E-value=1.5e+02 Score=22.22 Aligned_cols=53 Identities=21% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il~~ 159 (185)
|-.+-..|+.+.+.|..++..|+... .++..|. -.++..|-.++....|..+.
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~-k~~~~~~--~~eL~~LI~KWr~asq~aae 57 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETAR-KVEAKNE--DKDLQTLIQKWKNAAQQAAE 57 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCc--HHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666555433 3444443 25677888888877774443
No 307
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=23.23 E-value=1.3e+02 Score=18.06 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSE 152 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~ 152 (185)
.|..|-+.|+.....|..||..
T Consensus 11 kLl~ekE~l~~r~eqL~~kLe~ 32 (34)
T 1a93_A 11 KLISEEDLLRKRREQLKHKLEQ 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555543
No 308
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=23.19 E-value=1.9e+02 Score=23.29 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 90 ARRSRMRKQKHLENLRNQLNRLRMENRELSNRLR 123 (185)
Q Consensus 90 ARRSR~RKk~~l~eLe~qV~~L~~eN~~L~~~l~ 123 (185)
|-|+-.+-++.++.||.++...+.++..+..++.
T Consensus 133 AertV~kLqkeiD~LEDeL~~eKek~k~i~~eLD 166 (175)
T 3mud_A 133 CLDTTAKNEKSIDDLEEKVAHAKEENLNMHQMLD 166 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666666666655544
No 309
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=23.06 E-value=2.4e+02 Score=21.04 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 029952 139 LRSEHTILRRRLSEIRQILLYR 160 (185)
Q Consensus 139 Lrae~~~Lr~rL~~l~~il~~~ 160 (185)
++..+..|..++..|......+
T Consensus 183 I~~~~~~l~~~w~~l~~~~~~R 204 (213)
T 1cun_A 183 ITAKMKGLKGKVSDLEKAAAQR 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555544443
No 310
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.93 E-value=1.6e+02 Score=19.06 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 110 RLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQIL 157 (185)
Q Consensus 110 ~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~il 157 (185)
+++.....|..++..++..+.....|.+.|..-...|-..+..-+.+|
T Consensus 4 ~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkLL 51 (59)
T 1gk6_A 4 QLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 444555555566666655555555555555555555555554444444
No 311
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=22.88 E-value=2.4e+02 Score=21.13 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 029952 140 RSEHTILRRRLSEIRQILLY 159 (185)
Q Consensus 140 rae~~~Lr~rL~~l~~il~~ 159 (185)
+..+..|..++..|......
T Consensus 187 ~~~~~~l~~~W~~L~~~~~~ 206 (216)
T 1u5p_A 187 QQRLAQFVDHWKELKQLAAA 206 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 312
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=22.78 E-value=3.1e+02 Score=22.41 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 100 HLENLRNQLNRLRMENRELSNRLRFA 125 (185)
Q Consensus 100 ~l~eLe~qV~~L~~eN~~L~~~l~~L 125 (185)
.++.|+.++..|+.+...|..++-.+
T Consensus 60 e~~~l~~~l~~l~~e~~el~d~~lR~ 85 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLSEMEHRYLRL 85 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666665555554433
No 313
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=22.57 E-value=2.2e+02 Score=20.44 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 109 NRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLS 151 (185)
Q Consensus 109 ~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~ 151 (185)
.+|+...-....+...|......|.+||.-|-.....|-++++
T Consensus 29 qqlr~~y~s~~se~~dlt~s~ekl~ae~~dlivsnsklfrqig 71 (97)
T 1no4_A 29 QQLRVNYGSFVSEYNDLTKSHEKLAAEKDDLIVSNSKLFRQIG 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhccCCeeeecHHHHHHhc
Confidence 3444455555566666666667777777777666665555444
No 314
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=22.15 E-value=1.7e+02 Score=18.91 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNR 121 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~ 121 (185)
|-.+|..|+..+.++..+
T Consensus 16 L~~kv~~Le~~c~~~eQE 33 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQE 33 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHH
Confidence 333444443333333333
No 315
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=21.77 E-value=54 Score=24.67 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 029952 128 HCQRVRTDNDRLR 140 (185)
Q Consensus 128 ~~~~L~~EN~~Lr 140 (185)
++..|..||..|+
T Consensus 16 eL~kLqmENK~LK 28 (110)
T 2oa5_A 16 EVERLKLENKTLK 28 (110)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444444
No 316
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.58 E-value=2e+02 Score=19.60 Aligned_cols=21 Identities=10% Similarity=0.384 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 029952 104 LRNQLNRLRMENRELSNRLRF 124 (185)
Q Consensus 104 Le~qV~~L~~eN~~L~~~l~~ 124 (185)
...++..|+.+...+..++..
T Consensus 7 iKkkmqaLk~Ekdna~e~~e~ 27 (75)
T 3mtu_A 7 IKKKMQMLKLDKENALDRAEQ 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 317
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=21.39 E-value=2.9e+02 Score=21.52 Aligned_cols=15 Identities=13% Similarity=0.268 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 029952 118 LSNRLRFALHHCQRV 132 (185)
Q Consensus 118 L~~~l~~L~~~~~~L 132 (185)
+..++..|..++..|
T Consensus 92 I~~r~~~l~~~W~~L 106 (250)
T 1quu_A 92 VNDRCQKICDQWDRL 106 (250)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 318
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=21.00 E-value=2.7e+02 Score=20.99 Aligned_cols=14 Identities=7% Similarity=0.107 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 029952 127 HHCQRVRTDNDRLR 140 (185)
Q Consensus 127 ~~~~~L~~EN~~Lr 140 (185)
.++..|..+-..++
T Consensus 71 ~eY~~L~KkYk~~~ 84 (119)
T 2avr_X 71 SQYQELASKYEDAL 84 (119)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555544443
No 319
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=20.72 E-value=67 Score=28.52 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 029952 135 DNDRLRSEHTILRRRL 150 (185)
Q Consensus 135 EN~~Lrae~~~Lr~rL 150 (185)
+-..|..+..++..++
T Consensus 83 ~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 83 EIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334433333
No 320
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=20.34 E-value=1.6e+02 Score=20.79 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 029952 140 RSEHTIL 146 (185)
Q Consensus 140 rae~~~L 146 (185)
..++..+
T Consensus 46 QvqLE~I 52 (79)
T 1tu3_F 46 QVQLERI 52 (79)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 321
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=20.33 E-value=2.2e+02 Score=19.55 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 108 LNRLRMENRELSNRLRFALHHCQRVRTDNDRLRSEHTILRRRLSEIRQ 155 (185)
Q Consensus 108 V~~L~~eN~~L~~~l~~L~~~~~~L~~EN~~Lrae~~~Lr~rL~~l~~ 155 (185)
+.+++.....|..++..++..+.....|...|..=...|-..+..-+.
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk 75 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433333
No 322
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=20.17 E-value=2.5e+02 Score=20.30 Aligned_cols=24 Identities=13% Similarity=0.218 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 029952 131 RVRTDNDRLRSEHTILRRRLSEIR 154 (185)
Q Consensus 131 ~L~~EN~~Lrae~~~Lr~rL~~l~ 154 (185)
.|..+=+.|-..+..+++.|..+.
T Consensus 17 ~L~~~E~~LD~~i~~~~~~l~~lt 40 (106)
T 2aze_B 17 QLQESEQQLDHLMNICTTQLRLLS 40 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333344444444444444444
Done!